Query psy15724
Match_columns 360
No_of_seqs 154 out of 450
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 19:48:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15724.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15724hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yqq_A Zinc finger HIT domain- 99.5 2.4E-15 8.3E-20 111.9 1.3 47 36-85 8-55 (56)
2 1x4s_A Protein FON, zinc finge 99.1 4.4E-12 1.5E-16 95.1 -0.2 39 41-82 12-53 (59)
3 2od1_A Protein CBFA2T1; zinc f 91.3 0.078 2.7E-06 38.9 1.7 41 38-81 11-56 (60)
4 1x4w_A Hypothetical protein FL 85.7 0.48 1.6E-05 36.1 2.7 38 37-78 12-54 (67)
5 2dj8_A Protein CBFA2T1; zinc f 85.5 0.33 1.1E-05 35.5 1.7 32 39-71 14-46 (60)
6 2jw6_A Deformed epidermal auto 81.3 0.35 1.2E-05 34.0 0.3 32 39-71 8-40 (52)
7 1wg2_A Zinc finger (AN1-like) 79.8 1.2 4.1E-05 33.6 2.9 39 36-78 11-51 (64)
8 2aus_D NOP10, ribosome biogene 78.6 0.65 2.2E-05 34.7 1.1 41 38-94 3-43 (60)
9 1wfp_A Zinc finger (AN1-like) 77.8 1.7 5.8E-05 33.7 3.2 41 36-80 21-63 (74)
10 2odd_A Protein CBFA2T1; MYND z 76.3 0.64 2.2E-05 34.2 0.5 38 39-79 16-58 (64)
11 1wff_A Riken cDNA 2810002D23 p 73.7 2.2 7.6E-05 33.9 3.0 40 36-79 21-63 (85)
12 2apo_B Ribosome biogenesis pro 73.0 1.3 4.3E-05 33.1 1.3 41 38-94 4-44 (60)
13 1wfh_A Zinc finger (AN1-like) 71.7 2.6 8.9E-05 31.8 2.8 38 37-78 12-51 (64)
14 3qww_A SET and MYND domain-con 70.5 1.1 3.6E-05 44.7 0.6 41 38-80 47-93 (433)
15 2d8q_A BLU protein, zinc finge 70.2 1.4 4.9E-05 33.3 1.1 41 40-81 15-58 (70)
16 3qwp_A SET and MYND domain-con 69.0 1.3 4.5E-05 43.7 0.9 41 38-80 45-91 (429)
17 2yqp_A Probable ATP-dependent 66.6 1.6 5.5E-05 32.4 0.7 31 41-72 20-50 (60)
18 1wfe_A Riken cDNA 2310008M20 p 65.7 5.4 0.00018 31.6 3.6 44 36-82 21-67 (86)
19 2w0t_A Lethal(3)malignant brai 62.6 1.3 4.6E-05 30.9 -0.4 35 38-72 4-38 (43)
20 1wfl_A Zinc finger protein 216 60.0 6.8 0.00023 30.3 3.2 29 36-65 21-51 (74)
21 1z60_A TFIIH basal transcripti 55.4 3.8 0.00013 30.3 1.0 39 41-79 16-57 (59)
22 3n71_A Histone lysine methyltr 48.8 4.6 0.00016 40.7 0.7 41 38-80 47-93 (490)
23 2d8v_A Zinc finger FYVE domain 48.7 5.3 0.00018 30.3 0.9 29 40-70 8-37 (67)
24 1x4v_A Hypothetical protein LO 48.1 10 0.00036 28.3 2.4 45 35-82 7-54 (63)
25 1vd4_A Transcription initiatio 43.5 15 0.0005 25.5 2.6 16 51-66 38-53 (62)
26 2l8e_A Polyhomeotic-like prote 40.8 9.9 0.00034 27.0 1.2 34 37-71 15-48 (49)
27 2jvx_A NF-kappa-B essential mo 40.0 9.7 0.00033 24.1 1.0 13 50-62 1-13 (28)
28 2e72_A POGO transposable eleme 34.0 13 0.00045 26.5 0.9 27 51-78 11-37 (49)
29 2i5o_A DNA polymerase ETA; zin 30.7 16 0.00055 24.7 0.9 12 50-61 7-18 (39)
30 2cot_A Zinc finger protein 435 29.7 24 0.00083 24.9 1.9 21 52-72 46-66 (77)
31 2m0e_A Zinc finger and BTB dom 28.3 14 0.00048 20.2 0.3 21 52-72 2-22 (29)
32 2kdx_A HYPA, hydrogenase/ureas 27.8 22 0.00075 28.9 1.5 22 40-61 73-99 (119)
33 1p7a_A BF3, BKLF, kruppel-like 27.5 15 0.00051 21.9 0.3 24 49-72 8-31 (37)
34 3jyw_9 60S ribosomal protein L 27.1 20 0.0007 27.5 1.1 13 50-62 24-36 (72)
35 2k2d_A Ring finger and CHY zin 27.0 12 0.0004 29.0 -0.3 42 20-61 17-64 (79)
36 3j21_i 50S ribosomal protein L 25.8 22 0.00074 28.0 1.0 13 50-62 33-45 (83)
37 3pwf_A Rubrerythrin; non heme 25.4 28 0.00096 30.3 1.8 22 40-61 138-162 (170)
38 1vq8_Z 50S ribosomal protein L 24.8 21 0.0007 28.0 0.7 12 50-61 25-36 (83)
39 1yuz_A Nigerythrin; rubrythrin 24.4 26 0.00089 31.4 1.4 22 40-61 171-195 (202)
40 1ffk_W Ribosomal protein L37AE 24.2 23 0.00078 27.2 0.8 13 49-61 24-36 (73)
41 3c5k_A HD6, histone deacetylas 24.2 38 0.0013 27.5 2.3 25 40-64 24-48 (109)
42 4gel_A Mitochondrial cardiolip 24.2 74 0.0025 27.5 4.3 46 104-153 60-106 (220)
43 1znf_A 31ST zinc finger from X 23.9 15 0.00051 20.0 -0.2 21 52-72 1-21 (27)
44 3iz5_m 60S ribosomal protein L 23.0 27 0.00092 28.0 1.1 13 50-62 34-46 (92)
45 1rik_A E6APC1 peptide; E6-bind 22.2 16 0.00054 20.2 -0.3 21 52-72 2-22 (29)
46 2els_A Zinc finger protein 406 22.2 19 0.00065 21.3 0.0 24 49-72 6-29 (36)
47 2lvr_A Zinc finger and BTB dom 27.7 19 0.00064 20.0 0.0 22 52-73 3-24 (30)
48 3izc_m 60S ribosomal protein R 21.5 28 0.00096 27.9 0.9 13 50-62 34-46 (92)
49 3cc2_Z 50S ribosomal protein L 21.1 28 0.00095 29.1 0.8 12 50-61 58-69 (116)
50 2lvu_A Zinc finger and BTB dom 26.2 21 0.00071 19.4 0.0 21 52-72 2-22 (26)
51 2kfq_A FP1; protein, de novo p 20.7 27 0.00093 20.3 0.5 22 52-73 2-23 (32)
52 4a17_Y RPL37A, 60S ribosomal p 20.6 30 0.001 28.3 0.9 13 50-62 34-46 (103)
53 1paa_A Yeast transcription fac 20.6 22 0.00077 19.7 0.1 20 52-71 2-21 (30)
54 2elm_A Zinc finger protein 406 20.1 20 0.0007 21.6 -0.2 23 49-71 6-28 (37)
55 1pvm_A Conserved hypothetical 20.0 23 0.00079 29.6 0.1 26 40-65 149-182 (184)
No 1
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2.4e-15 Score=111.94 Aligned_cols=47 Identities=26% Similarity=0.636 Sum_probs=42.8
Q ss_pred ccCCccCcccCCCCCCcccCCCCCCccccccccccccccccccCCC-Cccc
Q psy15724 36 KVSRLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIR-NKVK 85 (360)
Q Consensus 36 ~~~~~~~C~vC~~~~~kY~CP~C~~~tCSl~C~k~Hk~~~~C~g~r-d~t~ 85 (360)
-+.++.+|.||+. .+||+||+|+++||||+|+|.||.+ |+|+| ||+.
T Consensus 8 ~~~~~~~C~vC~~-~~kY~CPrC~~~yCSl~C~k~Hk~~--C~~~~~~p~~ 55 (56)
T 2yqq_A 8 LKCSTVVCVICLE-KPKYRCPACRVPYCSVVCFRKHKEQ--CNPETSGPSS 55 (56)
T ss_dssp CCCCCCCCTTTCS-CCSEECTTTCCEESSHHHHHHHHHH--CCCCCSSCCC
T ss_pred cCCCCCccCcCcC-CCeeeCCCCCCCeeCHHHHHHHHhh--CcCCcCCCCC
Confidence 4567778999999 9999999999999999999999976 99999 9864
No 2
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=99.13 E-value=4.4e-12 Score=95.12 Aligned_cols=39 Identities=38% Similarity=0.996 Sum_probs=34.9
Q ss_pred cCcccCCC---CCCcccCCCCCCccccccccccccccccccCCCC
Q psy15724 41 GDCEVCAI---EPAKYTCPKCELKTCCLNCVNIHKRELECDGIRN 82 (360)
Q Consensus 41 ~~C~vC~~---~~~kY~CP~C~~~tCSl~C~k~Hk~~~~C~g~rd 82 (360)
.+|.||+. +.+||+||+|+++||||.|+|.|| .|++..-
T Consensus 12 ~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k~Hk---~Cse~F~ 53 (59)
T 1x4s_A 12 GPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTHG---TCAENFY 53 (59)
T ss_dssp EEECSSCTTCCEEECEECTTTCCEESSHHHHHHHC---CGGGGTS
T ss_pred CcCcCCCCCcCCCccccCcCCCCCccChHHHHHHh---HhCHHHH
Confidence 48999995 679999999999999999999998 6998753
No 3
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=91.26 E-value=0.078 Score=38.93 Aligned_cols=41 Identities=24% Similarity=0.499 Sum_probs=31.9
Q ss_pred CCccCcccCCCCCCcccCCCCC-Cccccccc----cccccccccccCCC
Q psy15724 38 SRLGDCEVCAIEPAKYTCPKCE-LKTCCLNC----VNIHKRELECDGIR 81 (360)
Q Consensus 38 ~~~~~C~vC~~~~~kY~CP~C~-~~tCSl~C----~k~Hk~~~~C~g~r 81 (360)
.....|..|+. .+..+|.+|. +.|||.+| ++.||. .|....
T Consensus 11 ~~~~~C~~C~~-~~~~~Cs~C~~v~YCs~~CQ~~dW~~Hk~--~C~~~~ 56 (60)
T 2od1_A 11 DSSESCWNCGR-KASETCSGCNTARYCGSFCQHKDWEKHHH--ICGQTL 56 (60)
T ss_dssp CCSSCCTTTSS-CCCEECTTTSCCEESSHHHHHHHHHHHTT--TSSCSS
T ss_pred CCCCccccCCC-cccccCCCCCCeeecCHHHHHHHHHHHhH--HHcccc
Confidence 44568999998 6899999997 57999999 566774 576543
No 4
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.70 E-value=0.48 Score=36.15 Aligned_cols=38 Identities=18% Similarity=0.460 Sum_probs=28.0
Q ss_pred cCCccCcccCCCCCCc-----ccCCCCCCcccccccccccccccccc
Q psy15724 37 VSRLGDCEVCAIEPAK-----YTCPKCELKTCCLNCVNIHKRELECD 78 (360)
Q Consensus 37 ~~~~~~C~vC~~~~~k-----Y~CP~C~~~tCSl~C~k~Hk~~~~C~ 78 (360)
+.....|..|.+...- |+| +|+..+|+.- +|..+.+|+
T Consensus 12 ~~~~~rC~~C~kk~gL~~~egf~C-rCg~~FC~~H---Ry~e~H~C~ 54 (67)
T 1x4w_A 12 QKSRRRCFQCQTKLELVQQELGSC-RCGYVFCMLH---RLPEQHDCT 54 (67)
T ss_dssp CSCTTBCSSSCCBCCHHHHHHHCC-SSSCCCCTTT---CSTGGGTCS
T ss_pred CccCCcchhhCCeecccccCceEe-cCCCEehhcc---CCccccCCc
Confidence 3445789999998874 899 9999999962 333455665
No 5
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=85.47 E-value=0.33 Score=35.46 Aligned_cols=32 Identities=25% Similarity=0.524 Sum_probs=26.4
Q ss_pred CccCcccCCCCCCcccCCCCCC-ccccccccccc
Q psy15724 39 RLGDCEVCAIEPAKYTCPKCEL-KTCCLNCVNIH 71 (360)
Q Consensus 39 ~~~~C~vC~~~~~kY~CP~C~~-~tCSl~C~k~H 71 (360)
....|..|+. .+..+|.+|.. .|||.+|-+.|
T Consensus 14 ~~~~C~~C~~-~~~~~Cs~C~~v~YCs~~CQ~~~ 46 (60)
T 2dj8_A 14 SSESCWNCGR-KASETCSGCNTARYCGSFCQHKD 46 (60)
T ss_dssp CSCCCSSSCS-CCCEECTTTSCCEESSHHHHHHT
T ss_pred CCcccccCCC-CCcccCCCCCCEeeeCHHHHHHH
Confidence 4568999998 68999999976 69999996554
No 6
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=81.33 E-value=0.35 Score=33.98 Aligned_cols=32 Identities=22% Similarity=0.520 Sum_probs=24.5
Q ss_pred CccCcccCCCCCCcccCCCCCC-ccccccccccc
Q psy15724 39 RLGDCEVCAIEPAKYTCPKCEL-KTCCLNCVNIH 71 (360)
Q Consensus 39 ~~~~C~vC~~~~~kY~CP~C~~-~tCSl~C~k~H 71 (360)
....|..|+. ++..+|.+|.. .|||.+|-+.|
T Consensus 8 ~~~~C~~C~~-~~~~~C~~C~~~~YCs~~CQ~~~ 40 (52)
T 2jw6_A 8 KEQSCVNCGR-EAMSECTGCHKVNYCSTFCQRKD 40 (52)
T ss_dssp ---CCSSSSS-SCSEECTTTCSSEESSHHHHHHH
T ss_pred cCCcCCCCCC-CCcCcCCCCCCEeecCHHHHHHH
Confidence 4568999998 58999999975 69999996554
No 7
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=79.80 E-value=1.2 Score=33.64 Aligned_cols=39 Identities=23% Similarity=0.500 Sum_probs=28.1
Q ss_pred ccCCccCcccCCCCCC--cccCCCCCCcccccccccccccccccc
Q psy15724 36 KVSRLGDCEVCAIEPA--KYTCPKCELKTCCLNCVNIHKRELECD 78 (360)
Q Consensus 36 ~~~~~~~C~vC~~~~~--kY~CP~C~~~tCSl~C~k~Hk~~~~C~ 78 (360)
++.....|..|.+... .|+| +|+..+|+.- +|-.+.+|+
T Consensus 11 ~~~~~~rC~~C~kkvgl~~f~C-rCg~~FC~~H---R~~e~H~C~ 51 (64)
T 1wg2_A 11 PVRPNNRCFSCNKKVGVMGFKC-KCGSTFCGSH---RYPEKHECS 51 (64)
T ss_dssp CSCCSCSCTTTCCCCTTSCEEC-TTSCEECSSS---CSSTTTTCC
T ss_pred CCCcCCcChhhCCcccccCeEe-ecCCEecccC---CCccccCCC
Confidence 4455688999998643 6999 9999999862 333455665
No 8
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=78.57 E-value=0.65 Score=34.68 Aligned_cols=41 Identities=29% Similarity=0.549 Sum_probs=29.4
Q ss_pred CCccCcccCCCCCCcccCCCCCCccccccccccccccccccCCCCccccccCCCcch
Q psy15724 38 SRLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFIPLQKFSN 94 (360)
Q Consensus 38 ~~~~~C~vC~~~~~kY~CP~C~~~tCSl~C~k~Hk~~~~C~g~rd~t~fVp~~~~~~ 94 (360)
.+|..|..|+.-.-+-.||.||..|.|. .|..|-|-..|..
T Consensus 3 s~mr~C~~Cg~YTLk~~CP~CG~~t~~a----------------hParfSP~Dky~~ 43 (60)
T 2aus_D 3 FRIRKCPKCGRYTLKETCPVCGEKTKVA----------------HPPRFSPEDPYGE 43 (60)
T ss_dssp -CCEECTTTCCEESSSBCTTTCSBCEES----------------SCCCCCSCCTTHH
T ss_pred ccceECCCCCCEEccccCcCCCCccCCC----------------CCCCCCCCCchHH
Confidence 4677899998766677899999888763 4566766666643
No 9
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=77.76 E-value=1.7 Score=33.75 Aligned_cols=41 Identities=20% Similarity=0.395 Sum_probs=29.3
Q ss_pred ccCCccCcccCCCCCC--cccCCCCCCccccccccccccccccccCC
Q psy15724 36 KVSRLGDCEVCAIEPA--KYTCPKCELKTCCLNCVNIHKRELECDGI 80 (360)
Q Consensus 36 ~~~~~~~C~vC~~~~~--kY~CP~C~~~tCSl~C~k~Hk~~~~C~g~ 80 (360)
++.....|..|.+... .|+| +|+..+|+.- +|..+.+|+-.
T Consensus 21 ~k~~~~RC~~C~kkvgL~~f~C-rCg~~FCs~H---Ry~e~H~C~fD 63 (74)
T 1wfp_A 21 PKSTATRCLSCNKKVGVTGFKC-RCGSTFCGTH---RYPESHECQFD 63 (74)
T ss_dssp TTCCCCBCSSSCCBCTTTCEEC-TTSCEECTTT---CSTTTSCCCSC
T ss_pred CcccCccchhhcCcccccceEe-ccCCEecccc---CCCcCCCCcCc
Confidence 4555678999986544 6999 9999999963 34455667643
No 10
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=76.32 E-value=0.64 Score=34.18 Aligned_cols=38 Identities=26% Similarity=0.570 Sum_probs=29.2
Q ss_pred CccCcccCCCCCCcccCCCCCC-cccccccccc----ccccccccC
Q psy15724 39 RLGDCEVCAIEPAKYTCPKCEL-KTCCLNCVNI----HKRELECDG 79 (360)
Q Consensus 39 ~~~~C~vC~~~~~kY~CP~C~~-~tCSl~C~k~----Hk~~~~C~g 79 (360)
....|..|+. .+..+|.+|.. .|||.+|-+. ||. .|..
T Consensus 16 ~~~~C~~C~~-~~~~~Cs~C~~~~YCs~~CQ~~~W~~Hk~--~C~~ 58 (64)
T 2odd_A 16 SSESCWNCGR-KASETCSGCNTARYCGSFCQHKDWEKHHH--ICGQ 58 (64)
T ss_dssp CSSSCTTTSS-CCCEEETTTSCCEESSHHHHHHHHHHHTT--TTTS
T ss_pred CCCcCccccC-CCcccCCCCCChhhCCHHHHHHHHHHHhH--HHhc
Confidence 4568999998 68899999965 6999999655 553 4654
No 11
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=73.73 E-value=2.2 Score=33.89 Aligned_cols=40 Identities=18% Similarity=0.513 Sum_probs=30.1
Q ss_pred ccCCccCcccCCCCCC---cccCCCCCCccccccccccccccccccC
Q psy15724 36 KVSRLGDCEVCAIEPA---KYTCPKCELKTCCLNCVNIHKRELECDG 79 (360)
Q Consensus 36 ~~~~~~~C~vC~~~~~---kY~CP~C~~~tCSl~C~k~Hk~~~~C~g 79 (360)
++..+..|..|++... .|+| +|+.-+|+.- +|..+.+|+.
T Consensus 21 ~k~~~~rC~~C~kkvgl~~~f~C-rCg~~FC~~H---Ry~e~H~C~f 63 (85)
T 1wff_A 21 KKKIMKHCFLCGKKTGLATSFEC-RCGNNFCASH---RYAEAHGCNY 63 (85)
T ss_dssp CCCCCCBCSSSCCBCSSSSCEEC-TTCCEECTTT---CSTGGGTCCS
T ss_pred CcccCccchhhCCeecccCCeEc-CCCCEecccC---CCccCCCCcc
Confidence 4556688999997655 6999 7999999963 4446677874
No 12
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=72.99 E-value=1.3 Score=33.11 Aligned_cols=41 Identities=29% Similarity=0.567 Sum_probs=28.8
Q ss_pred CCccCcccCCCCCCcccCCCCCCccccccccccccccccccCCCCccccccCCCcch
Q psy15724 38 SRLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFIPLQKFSN 94 (360)
Q Consensus 38 ~~~~~C~vC~~~~~kY~CP~C~~~tCSl~C~k~Hk~~~~C~g~rd~t~fVp~~~~~~ 94 (360)
.++..|..|+.-.-+-.||.||..|-| ..|..|-|-..|..
T Consensus 4 s~mr~C~~CgvYTLk~~CP~CG~~T~~----------------~hParfSp~Dky~~ 44 (60)
T 2apo_B 4 MRMKKCPKCGLYTLKEICPKCGEKTVI----------------PKPPKFSLEDRWGK 44 (60)
T ss_dssp CCCEECTTTCCEESSSBCSSSCSBCBC----------------CCCCCCCTTCTTHH
T ss_pred hhceeCCCCCCEeccccCcCCCCcCCC----------------CCCCCCCCCcchHH
Confidence 456778888876668888888877644 24667777666654
No 13
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=71.69 E-value=2.6 Score=31.82 Aligned_cols=38 Identities=21% Similarity=0.520 Sum_probs=26.9
Q ss_pred cCCccCcccCCCCCC--cccCCCCCCcccccccccccccccccc
Q psy15724 37 VSRLGDCEVCAIEPA--KYTCPKCELKTCCLNCVNIHKRELECD 78 (360)
Q Consensus 37 ~~~~~~C~vC~~~~~--kY~CP~C~~~tCSl~C~k~Hk~~~~C~ 78 (360)
+.....|..|.+... .|+| +|+..+|+.- +|-.+.+|+
T Consensus 12 k~~~~rC~~C~kkvgl~~f~C-rCg~~FC~~H---Ry~e~H~C~ 51 (64)
T 1wfh_A 12 PQRPNRCTVCRKRVGLTGFMC-RCGTTFCGSH---RYPEVHGCT 51 (64)
T ss_dssp CSSCCCCTTTCCCCCTTCEEC-SSSCEECTTT---CSTTTTTCC
T ss_pred CCcCCcChhhCCccCccCEEe-ecCCEecccc---CCcccCCCC
Confidence 345578999998533 6999 8999999962 333445565
No 14
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=70.47 E-value=1.1 Score=44.69 Aligned_cols=41 Identities=32% Similarity=0.753 Sum_probs=32.0
Q ss_pred CCccCcccCCCC-CCcccCCCCCC-cccccccc----ccccccccccCC
Q psy15724 38 SRLGDCEVCAIE-PAKYTCPKCEL-KTCCLNCV----NIHKRELECDGI 80 (360)
Q Consensus 38 ~~~~~C~vC~~~-~~kY~CP~C~~-~tCSl~C~----k~Hk~~~~C~g~ 80 (360)
.....|..|... ....+|++|.. +|||..|- +.|| ..|...
T Consensus 47 ~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk--~eC~~l 93 (433)
T 3qww_A 47 ERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHK--LECSSM 93 (433)
T ss_dssp GTTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHHHHHHT--TTHHHH
T ss_pred ccCCcCCcccccCCCCCCCCCCcceeecChhhhhhhhhHHH--HHHHHH
Confidence 456789999974 46799999997 99999997 5576 467643
No 15
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Probab=70.15 E-value=1.4 Score=33.30 Aligned_cols=41 Identities=24% Similarity=0.564 Sum_probs=30.0
Q ss_pred ccCcccCCCCCCcccCCCCCC-cccccccccccccc--ccccCCC
Q psy15724 40 LGDCEVCAIEPAKYTCPKCEL-KTCCLNCVNIHKRE--LECDGIR 81 (360)
Q Consensus 40 ~~~C~vC~~~~~kY~CP~C~~-~tCSl~C~k~Hk~~--~~C~g~r 81 (360)
...|.+|+. .+..+|-+|.. .|||..|-+.|-.. ..|....
T Consensus 15 ~~~C~~C~~-~~~~~Cs~Ck~v~YCs~eCQ~~~W~~HK~~C~~~~ 58 (70)
T 2d8q_A 15 RPRCAYCSA-EASKRCSRCQNEWYCCRECQVKHWEKHGKTCVLAA 58 (70)
T ss_dssp CCBCSSSCC-BCCCBCTTTSCCBCSCHHHHHHTHHHHHHHCCCCC
T ss_pred CCcCCCCCC-cccccCCCCCCEeeCCHHHhHHHHHHHHHHHHHHH
Confidence 458999998 57889999985 59999997655432 3566443
No 16
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=69.01 E-value=1.3 Score=43.74 Aligned_cols=41 Identities=32% Similarity=0.711 Sum_probs=31.2
Q ss_pred CCccCcccCCCC-CCcccCCCCCC-ccccccccc----cccccccccCC
Q psy15724 38 SRLGDCEVCAIE-PAKYTCPKCEL-KTCCLNCVN----IHKRELECDGI 80 (360)
Q Consensus 38 ~~~~~C~vC~~~-~~kY~CP~C~~-~tCSl~C~k----~Hk~~~~C~g~ 80 (360)
.....|..|... ....+|++|.. .+||..|.+ .|| ..|...
T Consensus 45 ~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk--~eC~~~ 91 (429)
T 3qwp_A 45 SRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHK--RECKCL 91 (429)
T ss_dssp GBTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHTHHHHH--HHHHHH
T ss_pred cCCCcCcCCCCcCCCCCcCCCCCCcccCChhhhhhhhhhhH--HhhhhH
Confidence 456789999963 46789999998 899999976 455 466543
No 17
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.64 E-value=1.6 Score=32.36 Aligned_cols=31 Identities=32% Similarity=0.696 Sum_probs=27.7
Q ss_pred cCcccCCCCCCcccCCCCCCcccccccccccc
Q psy15724 41 GDCEVCAIEPAKYTCPKCELKTCCLNCVNIHK 72 (360)
Q Consensus 41 ~~C~vC~~~~~kY~CP~C~~~tCSl~C~k~Hk 72 (360)
..|.||+. -.-|-|-.=.-.-|||+|-..|-
T Consensus 20 PvCvvCGr-yGeYICd~Td~DVCSlECK~~~l 50 (60)
T 2yqp_A 20 PICVVCGR-YGEYICDKTDEDVCSLECKAKHL 50 (60)
T ss_dssp CCCSSSSS-CCSEECSSSCCEESSHHHHHHHH
T ss_pred ceEEEecC-ccceeecCCCcchhhHHHHHHHH
Confidence 45999997 78999999999999999988775
No 18
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=65.65 E-value=5.4 Score=31.57 Aligned_cols=44 Identities=20% Similarity=0.531 Sum_probs=33.1
Q ss_pred ccCCccCccc--CCCCCC-cccCCCCCCccccccccccccccccccCCCC
Q psy15724 36 KVSRLGDCEV--CAIEPA-KYTCPKCELKTCCLNCVNIHKRELECDGIRN 82 (360)
Q Consensus 36 ~~~~~~~C~v--C~~~~~-kY~CP~C~~~tCSl~C~k~Hk~~~~C~g~rd 82 (360)
++.+...|.. |.+... .|+|..|+..+|.. =++..+.+|.+..+
T Consensus 21 ~~~~~~~C~~~~Ck~~~~l~f~C~~C~~~FC~~---HR~~e~H~C~~~~~ 67 (86)
T 1wfe_A 21 DEHKSYSCSFKGCTDVELVAVICPYCEKNFCLR---HRHQSDHDCEKLEV 67 (86)
T ss_dssp SCSCCEECCSTTCCCEESSCEECTTTCCEECGG---GCSTGGGTCSSSSC
T ss_pred cCCCCCCCCCcCCCCCCccceECCCCCcccccc---cCCccCCCCCCCcc
Confidence 4555677998 996544 89999999999985 24556678988754
No 19
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=62.62 E-value=1.3 Score=30.91 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=24.5
Q ss_pred CCccCcccCCCCCCcccCCCCCCcccccccccccc
Q psy15724 38 SRLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHK 72 (360)
Q Consensus 38 ~~~~~C~vC~~~~~kY~CP~C~~~tCSl~C~k~Hk 72 (360)
..+..|+.|+.-..+.+=-+=..|.||+.|.+..+
T Consensus 4 ~~~~~CE~CG~~g~~~~F~~ksKRFCS~~Carry~ 38 (43)
T 2w0t_A 4 SEPAVCEMCGIVGTREAFFSKTKRFCSVSCSRSYS 38 (43)
T ss_dssp CCEEECTTTCCEEETTTSCTTTSSSSSHHHHHHHH
T ss_pred CceehhhhhcCcchhhhhccCCcceechhhhCccc
Confidence 34667999997544444333457899999998876
No 20
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=59.97 E-value=6.8 Score=30.33 Aligned_cols=29 Identities=21% Similarity=0.556 Sum_probs=23.2
Q ss_pred ccCCccCcccCCCCC--CcccCCCCCCccccc
Q psy15724 36 KVSRLGDCEVCAIEP--AKYTCPKCELKTCCL 65 (360)
Q Consensus 36 ~~~~~~~C~vC~~~~--~kY~CP~C~~~tCSl 65 (360)
++.....|..|.+.. .-|+|. |+..+|+.
T Consensus 21 ~k~~~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~ 51 (74)
T 1wfl_A 21 PKPKKNRCFMCRKKVGLTGFDCR-CGNLFCGL 51 (74)
T ss_dssp CCSCTTBCSSSCCBCGGGCEECT-TSCEECSS
T ss_pred CCCcCCcChhhCCcccccCeecC-CCCEechh
Confidence 455577899999853 369999 99999986
No 21
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=55.44 E-value=3.8 Score=30.32 Aligned_cols=39 Identities=28% Similarity=0.474 Sum_probs=31.4
Q ss_pred cCcccCCCCCC---cccCCCCCCccccccccccccccccccC
Q psy15724 41 GDCEVCAIEPA---KYTCPKCELKTCCLNCVNIHKRELECDG 79 (360)
Q Consensus 41 ~~C~vC~~~~~---kY~CP~C~~~tCSl~C~k~Hk~~~~C~g 79 (360)
..|..|+..-. .|+||+|..-.|--=-...|..-.+|-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPg 57 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPG 57 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSST
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcC
Confidence 35999987432 5999999999998777788888888866
No 22
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=48.77 E-value=4.6 Score=40.73 Aligned_cols=41 Identities=27% Similarity=0.515 Sum_probs=31.1
Q ss_pred CCccCcccCCCC-CCcccCCCCCC-ccccccccc----cccccccccCC
Q psy15724 38 SRLGDCEVCAIE-PAKYTCPKCEL-KTCCLNCVN----IHKRELECDGI 80 (360)
Q Consensus 38 ~~~~~C~vC~~~-~~kY~CP~C~~-~tCSl~C~k----~Hk~~~~C~g~ 80 (360)
.....|..|... ....+|++|.. .+||..|.+ .|| ..|...
T Consensus 47 ~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk--~eC~~~ 93 (490)
T 3n71_A 47 LINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHK--NECAAI 93 (490)
T ss_dssp GTTTBCTTTCCBCSCCEECTTTSCCEESSHHHHHHHHHHHH--HHHHHH
T ss_pred ccCCcCCCCCCCCCCCCCCCCCCCcCcCCHHHhhhhhhHHH--HHhHHH
Confidence 456789999763 45789999998 599999975 566 467643
No 23
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=48.73 E-value=5.3 Score=30.33 Aligned_cols=29 Identities=28% Similarity=0.619 Sum_probs=22.8
Q ss_pred ccCcccCCCCCCcccCCCC-CCcccccccccc
Q psy15724 40 LGDCEVCAIEPAKYTCPKC-ELKTCCLNCVNI 70 (360)
Q Consensus 40 ~~~C~vC~~~~~kY~CP~C-~~~tCSl~C~k~ 70 (360)
..-|.||.. .|.++|.+| +-.||. .|++.
T Consensus 8 ~pWC~ICne-DAtlrC~gCdgDLYC~-rC~rE 37 (67)
T 2d8v_A 8 LPWCCICNE-DATLRCAGCDGDLYCA-RCFRE 37 (67)
T ss_dssp CSSCTTTCS-CCCEEETTTTSEEECS-SHHHH
T ss_pred CCeeEEeCC-CCeEEecCCCCceehH-HHHHH
Confidence 456999998 599999999 666665 67764
No 24
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.09 E-value=10 Score=28.28 Aligned_cols=45 Identities=24% Similarity=0.543 Sum_probs=32.8
Q ss_pred hccCCccCccc--CCCCCC-cccCCCCCCccccccccccccccccccCCCC
Q psy15724 35 KKVSRLGDCEV--CAIEPA-KYTCPKCELKTCCLNCVNIHKRELECDGIRN 82 (360)
Q Consensus 35 ~~~~~~~~C~v--C~~~~~-kY~CP~C~~~tCSl~C~k~Hk~~~~C~g~rd 82 (360)
+++.....|.+ |.+... .|+|..|+..+|+.- ++..+.+|.+...
T Consensus 7 k~k~~~~~Cs~~~Ck~~~ll~f~C~~C~~~FC~~H---R~~e~H~C~~~~~ 54 (63)
T 1x4v_A 7 GRKIFTNKCERAGCRQREMMKLTCERCSRNFCIKH---RHPLDHDCSGEGH 54 (63)
T ss_dssp CCCTTCCCCCSTTCCCCCSSCCBCSSSCCBCCHHH---HSTTSSCCCSTTS
T ss_pred CCcccCCCCCccCCCCCCccceECCCCCcccCccc---CCccCCcCCCCCC
Confidence 34556778998 997544 899999999999852 3445667887643
No 25
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=43.45 E-value=15 Score=25.52 Aligned_cols=16 Identities=13% Similarity=0.345 Sum_probs=8.4
Q ss_pred CcccCCCCCCcccccc
Q psy15724 51 AKYTCPKCELKTCCLN 66 (360)
Q Consensus 51 ~kY~CP~C~~~tCSl~ 66 (360)
-.|+|+.|+..+-...
T Consensus 38 k~~~C~~C~k~f~~~~ 53 (62)
T 1vd4_A 38 GTFRCTFCHTEVEEDE 53 (62)
T ss_dssp TEEBCSSSCCBCEECT
T ss_pred CCEECCCCCCccccCc
Confidence 4566666665544333
No 26
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=40.84 E-value=9.9 Score=27.04 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=23.3
Q ss_pred cCCccCcccCCCCCCcccCCCCCCccccccccccc
Q psy15724 37 VSRLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIH 71 (360)
Q Consensus 37 ~~~~~~C~vC~~~~~kY~CP~C~~~tCSl~C~k~H 71 (360)
...+..|..|+..-.... .+=..++||..|-+++
T Consensus 15 ~~~~~~C~~CG~~i~~~~-~~r~krFCS~sCR~~y 48 (49)
T 2l8e_A 15 KANLLKCEYCGKYAPAEQ-FRGSKRFCSMTCAKRY 48 (49)
T ss_dssp GCSEEECTTTCCEEEGGG-CTTTSSSCSHHHHHHH
T ss_pred cCCCCcChhccCcccccc-CCCCCccCCHHHHhhh
Confidence 355667999997544433 2335789999998765
No 27
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=39.98 E-value=9.7 Score=24.13 Aligned_cols=13 Identities=31% Similarity=1.132 Sum_probs=10.4
Q ss_pred CCcccCCCCCCcc
Q psy15724 50 PAKYTCPKCELKT 62 (360)
Q Consensus 50 ~~kY~CP~C~~~t 62 (360)
++||+||.|....
T Consensus 1 ~~k~~CpvCk~q~ 13 (28)
T 2jvx_A 1 SSDFCCPKCQYQA 13 (28)
T ss_dssp CCCEECTTSSCEE
T ss_pred CCcccCccccccC
Confidence 4789999998754
No 28
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.00 E-value=13 Score=26.54 Aligned_cols=27 Identities=19% Similarity=0.476 Sum_probs=20.9
Q ss_pred CcccCCCCCCcccccccccccccccccc
Q psy15724 51 AKYTCPKCELKTCCLNCVNIHKRELECD 78 (360)
Q Consensus 51 ~kY~CP~C~~~tCSl~C~k~Hk~~~~C~ 78 (360)
..|.||+|++.+=.+.=-+.|.. ..|-
T Consensus 11 ~~~~CPrCn~~f~~~~sLr~Hmk-ycCp 37 (49)
T 2e72_A 11 GRKICPRCNAQFRVTEALRGHMC-YCCP 37 (49)
T ss_dssp SCCCCTTTCCCCSSHHHHHHHHH-HHCT
T ss_pred CceeCCcccccccchHHHHhhhh-hcCc
Confidence 58999999999977777777765 4454
No 29
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=30.65 E-value=16 Score=24.73 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=9.6
Q ss_pred CCcccCCCCCCc
Q psy15724 50 PAKYTCPKCELK 61 (360)
Q Consensus 50 ~~kY~CP~C~~~ 61 (360)
...|+||+|+..
T Consensus 7 ~~~~~C~~C~~~ 18 (39)
T 2i5o_A 7 EDQVPCEKCGSL 18 (39)
T ss_dssp CCEEECTTTCCE
T ss_pred CCCcccccccCc
Confidence 457999999875
No 30
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=29.69 E-value=24 Score=24.93 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=12.9
Q ss_pred cccCCCCCCcccccccccccc
Q psy15724 52 KYTCPKCELKTCCLNCVNIHK 72 (360)
Q Consensus 52 kY~CP~C~~~tCSl~C~k~Hk 72 (360)
.|+|+-|+..+-...-.+.|.
T Consensus 46 ~~~C~~C~~~f~~~~~L~~H~ 66 (77)
T 2cot_A 46 PYKCDECGKAFIQRSHLIGHH 66 (77)
T ss_dssp SEECSSSCCEESSHHHHHHHG
T ss_pred CeeCCCCCCccCCHHHHHHHH
Confidence 477777776665555555554
No 31
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=28.33 E-value=14 Score=20.21 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=14.7
Q ss_pred cccCCCCCCcccccccccccc
Q psy15724 52 KYTCPKCELKTCCLNCVNIHK 72 (360)
Q Consensus 52 kY~CP~C~~~tCSl~C~k~Hk 72 (360)
.|.|+.|+..+....-...|.
T Consensus 2 ~~~C~~C~~~f~~~~~l~~H~ 22 (29)
T 2m0e_A 2 EHKCPHCDKKFNQVGNLKAHL 22 (29)
T ss_dssp CCCCSSCCCCCCTTTHHHHHH
T ss_pred CCcCCCCCcccCCHHHHHHHH
Confidence 488888888776665555554
No 32
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=27.82 E-value=22 Score=28.94 Aligned_cols=22 Identities=32% Similarity=0.733 Sum_probs=14.7
Q ss_pred ccCcccCCCC----CCcc-cCCCCCCc
Q psy15724 40 LGDCEVCAIE----PAKY-TCPKCELK 61 (360)
Q Consensus 40 ~~~C~vC~~~----~~kY-~CP~C~~~ 61 (360)
...|..|+.. ...+ +||.|+..
T Consensus 73 ~~~C~~CG~~~e~~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 73 ELECKDCSHVFKPNALDYGVCEKCHSK 99 (119)
T ss_dssp EEECSSSSCEECSCCSTTCCCSSSSSC
T ss_pred eEEcCCCCCEEeCCCCCCCcCccccCC
Confidence 4568888742 3467 78888765
No 33
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=27.49 E-value=15 Score=21.91 Aligned_cols=24 Identities=17% Similarity=0.555 Sum_probs=16.7
Q ss_pred CCCcccCCCCCCcccccccccccc
Q psy15724 49 EPAKYTCPKCELKTCCLNCVNIHK 72 (360)
Q Consensus 49 ~~~kY~CP~C~~~tCSl~C~k~Hk 72 (360)
++..|+|+.|+..+-...-.+.|.
T Consensus 8 ~~k~~~C~~C~k~f~~~~~l~~H~ 31 (37)
T 1p7a_A 8 GIKPFQCPDCDRSFSRSDHLALHR 31 (37)
T ss_dssp CSSSBCCTTTCCCBSSHHHHHHHH
T ss_pred CCCCccCCCCCcccCcHHHHHHHH
Confidence 345799999998776655555553
No 34
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=27.07 E-value=20 Score=27.46 Aligned_cols=13 Identities=46% Similarity=0.889 Sum_probs=10.8
Q ss_pred CCcccCCCCCCcc
Q psy15724 50 PAKYTCPKCELKT 62 (360)
Q Consensus 50 ~~kY~CP~C~~~t 62 (360)
.++|+||.|+...
T Consensus 24 ~~ky~C~fCgk~~ 36 (72)
T 3jyw_9 24 HARYDCSFCGKKT 36 (72)
T ss_dssp HSCBCCSSCCSSC
T ss_pred ccCccCCCCCCce
Confidence 4799999999764
No 35
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=27.01 E-value=12 Score=29.01 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=18.5
Q ss_pred eecCCCCCCCCchhhhccCCccCcccCCCCC----Ccc--cCCCCCCc
Q psy15724 20 KMDCTTEQNLPPEVEKKVSRLGDCEVCAIEP----AKY--TCPKCELK 61 (360)
Q Consensus 20 ~~d~~~~~~~~~~~~~~~~~~~~C~vC~~~~----~kY--~CP~C~~~ 61 (360)
.+|.-....+-|+.-+......+|.-|+... +.| +||.|+..
T Consensus 17 ~lD~~ia~~pmP~~y~~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~Sy 64 (79)
T 2k2d_A 17 QLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESY 64 (79)
T ss_dssp ----------------CCEEEEEESSSCCEEEEECCTTCCCCTTTSCC
T ss_pred HHHHHHHhCCCCHHHhCCEeEEECCCCCCCccCCceeecccCcCCCCc
Confidence 3566555555455544455567899998643 346 89999865
No 36
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.79 E-value=22 Score=28.04 Aligned_cols=13 Identities=46% Similarity=0.823 Sum_probs=10.8
Q ss_pred CCcccCCCCCCcc
Q psy15724 50 PAKYTCPKCELKT 62 (360)
Q Consensus 50 ~~kY~CP~C~~~t 62 (360)
.++|+||.|+...
T Consensus 33 ~~ky~CpfCGk~~ 45 (83)
T 3j21_i 33 RQKHTCPVCGRKA 45 (83)
T ss_dssp HSCBCCSSSCSSC
T ss_pred hcccCCCCCCCce
Confidence 4699999999774
No 37
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=25.43 E-value=28 Score=30.33 Aligned_cols=22 Identities=27% Similarity=0.683 Sum_probs=13.3
Q ss_pred ccCcccCCC---CCCcccCCCCCCc
Q psy15724 40 LGDCEVCAI---EPAKYTCPKCELK 61 (360)
Q Consensus 40 ~~~C~vC~~---~~~kY~CP~C~~~ 61 (360)
.-.|.+|+- ..+.-.||.|+.+
T Consensus 138 ~~~C~~CG~i~~~~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 138 VYICPICGYTAVDEAPEYCPVCGAP 162 (170)
T ss_dssp EEECTTTCCEEESCCCSBCTTTCCB
T ss_pred eeEeCCCCCeeCCCCCCCCCCCCCC
Confidence 345778873 2344478888753
No 38
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=24.81 E-value=21 Score=27.98 Aligned_cols=12 Identities=25% Similarity=0.731 Sum_probs=10.2
Q ss_pred CCcccCCCCCCc
Q psy15724 50 PAKYTCPKCELK 61 (360)
Q Consensus 50 ~~kY~CP~C~~~ 61 (360)
.++|+||.|+..
T Consensus 25 ~~~y~Cp~CG~~ 36 (83)
T 1vq8_Z 25 NEDHACPNCGED 36 (83)
T ss_dssp HSCEECSSSCCE
T ss_pred cccCcCCCCCCc
Confidence 479999999974
No 39
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=24.39 E-value=26 Score=31.35 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=13.4
Q ss_pred ccCcccCCCC---CCcccCCCCCCc
Q psy15724 40 LGDCEVCAIE---PAKYTCPKCELK 61 (360)
Q Consensus 40 ~~~C~vC~~~---~~kY~CP~C~~~ 61 (360)
.-.|.+|+-- .+..+||.|+.+
T Consensus 171 ~~~C~~CG~i~~g~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKGEDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEESSCCSBCTTTCCB
T ss_pred EEEECCCCCEEcCcCCCCCCCCCCC
Confidence 3457777732 345677777754
No 40
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=24.21 E-value=23 Score=27.22 Aligned_cols=13 Identities=38% Similarity=1.024 Sum_probs=10.6
Q ss_pred CCCcccCCCCCCc
Q psy15724 49 EPAKYTCPKCELK 61 (360)
Q Consensus 49 ~~~kY~CP~C~~~ 61 (360)
..++|+||.|+..
T Consensus 24 q~~ky~C~fCgk~ 36 (73)
T 1ffk_W 24 HKKKYKCPVCGFP 36 (73)
T ss_pred cccCccCCCCCCc
Confidence 3579999999964
No 41
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=24.21 E-value=38 Score=27.52 Aligned_cols=25 Identities=20% Similarity=0.542 Sum_probs=21.8
Q ss_pred ccCcccCCCCCCcccCCCCCCcccc
Q psy15724 40 LGDCEVCAIEPAKYTCPKCELKTCC 64 (360)
Q Consensus 40 ~~~C~vC~~~~~kY~CP~C~~~tCS 64 (360)
...|.+|.....-|-|=.|+.-.|.
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEEC
T ss_pred CCcCccccCCCCeeeeeecCccccC
Confidence 4579999999999999999988875
No 42
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=24.16 E-value=74 Score=27.48 Aligned_cols=46 Identities=4% Similarity=-0.019 Sum_probs=26.7
Q ss_pred HHHHHhhhhhccCCCccc-cccCCCCCCchhHHHHHHHHHcCcEEEEcCch
Q psy15724 104 LEEVSNSLFKYKRDPVKN-SVSMYNKLPHPLHILRKYAYMRKTQVKFLPKL 153 (360)
Q Consensus 104 Le~i~R~ve~~krd~~~r-~~~~~~~lp~~~~~Lr~~a~~RgI~L~~lP~g 153 (360)
|+.+-..++.|++.+... +.... +.....|.. |.+|||.++++=.+
T Consensus 60 ~~~ii~~I~~A~~sI~i~~Y~~~~---~~I~~aL~~-Aa~RGV~VRii~D~ 106 (220)
T 4gel_A 60 VAKIVEQIDRAVYSIDLAIYTFTS---LFLADSIKR-ALQRGVIIRIISDG 106 (220)
T ss_dssp HHHHHHHHHTCSSEEEEECSCBCC---HHHHHHHHH-HHHHTCEEEEECCT
T ss_pred HHHHHHHHHHhhhEEEEEEEEeCC---HHHHHHHHH-HHHcCCeEEEEEec
Confidence 566666777777643321 22211 123456655 45799999988654
No 43
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=23.90 E-value=15 Score=20.03 Aligned_cols=21 Identities=24% Similarity=0.475 Sum_probs=14.3
Q ss_pred cccCCCCCCcccccccccccc
Q psy15724 52 KYTCPKCELKTCCLNCVNIHK 72 (360)
Q Consensus 52 kY~CP~C~~~tCSl~C~k~Hk 72 (360)
.|.|+.|+..+-+..-.+.|.
T Consensus 1 ~~~C~~C~k~f~~~~~l~~H~ 21 (27)
T 1znf_A 1 XYKCGLCERSFVEKSALSRHQ 21 (27)
T ss_dssp -CBCSSSCCBCSSHHHHHHHG
T ss_pred CccCCCCCCcCCCHHHHHHHH
Confidence 378888888776665556664
No 44
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=23.03 E-value=27 Score=28.01 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=10.9
Q ss_pred CCcccCCCCCCcc
Q psy15724 50 PAKYTCPKCELKT 62 (360)
Q Consensus 50 ~~kY~CP~C~~~t 62 (360)
.++|+||.|+...
T Consensus 34 ~~ky~CpfCgk~~ 46 (92)
T 3iz5_m 34 HSKYFCEFCGKFA 46 (92)
T ss_dssp HSCBCCTTTCSSC
T ss_pred hccccCcccCCCe
Confidence 4799999999774
No 45
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=22.19 E-value=16 Score=20.22 Aligned_cols=21 Identities=24% Similarity=0.687 Sum_probs=15.4
Q ss_pred cccCCCCCCcccccccccccc
Q psy15724 52 KYTCPKCELKTCCLNCVNIHK 72 (360)
Q Consensus 52 kY~CP~C~~~tCSl~C~k~Hk 72 (360)
.|.|+.|+..+-...-...|.
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~ 22 (29)
T 1rik_A 2 KFACPECPKRFMRSDHLTLHI 22 (29)
T ss_dssp CEECSSSSCEESCSHHHHHHH
T ss_pred CccCCCCCchhCCHHHHHHHH
Confidence 488999988877666666664
No 46
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.19 E-value=19 Score=21.33 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=16.9
Q ss_pred CCCcccCCCCCCcccccccccccc
Q psy15724 49 EPAKYTCPKCELKTCCLNCVNIHK 72 (360)
Q Consensus 49 ~~~kY~CP~C~~~tCSl~C~k~Hk 72 (360)
.+..|.|+.|+..+-...-.+.|.
T Consensus 6 ~~k~~~C~~C~k~f~~~~~l~~H~ 29 (36)
T 2els_A 6 SGKIFTCEYCNKVFKFKHSLQAHL 29 (36)
T ss_dssp CCCCEECTTTCCEESSHHHHHHHH
T ss_pred CCCCEECCCCCceeCCHHHHHHHH
Confidence 455799999988776655555554
No 47
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=27.69 E-value=19 Score=19.99 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=16.7
Q ss_pred cccCCCCCCccccccccccccc
Q psy15724 52 KYTCPKCELKTCCLNCVNIHKR 73 (360)
Q Consensus 52 kY~CP~C~~~tCSl~C~k~Hk~ 73 (360)
.|.|+.|+..+-...-.+.|..
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H~~ 24 (30)
T 2lvr_A 3 PYVCIHCQRQFADPGALQRHVR 24 (30)
Confidence 5889999888777776777753
No 48
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=21.51 E-value=28 Score=27.90 Aligned_cols=13 Identities=46% Similarity=0.889 Sum_probs=10.7
Q ss_pred CCcccCCCCCCcc
Q psy15724 50 PAKYTCPKCELKT 62 (360)
Q Consensus 50 ~~kY~CP~C~~~t 62 (360)
.++|+||.|+...
T Consensus 34 ~~ky~CpfCgk~~ 46 (92)
T 3izc_m 34 HARYDCSFCGKKT 46 (92)
T ss_dssp HSCCCCSSSCSSC
T ss_pred hcCCcCCCCCCce
Confidence 4799999999664
No 49
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=21.13 E-value=28 Score=29.08 Aligned_cols=12 Identities=25% Similarity=0.731 Sum_probs=10.2
Q ss_pred CCcccCCCCCCc
Q psy15724 50 PAKYTCPKCELK 61 (360)
Q Consensus 50 ~~kY~CP~C~~~ 61 (360)
.++|+||.|+..
T Consensus 58 ~akytCPfCGk~ 69 (116)
T 3cc2_Z 58 NEDHACPNCGED 69 (116)
T ss_dssp HSCEECSSSCCE
T ss_pred ccCCcCCCCCCc
Confidence 479999999974
No 50
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=26.21 E-value=21 Score=19.39 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=13.5
Q ss_pred cccCCCCCCcccccccccccc
Q psy15724 52 KYTCPKCELKTCCLNCVNIHK 72 (360)
Q Consensus 52 kY~CP~C~~~tCSl~C~k~Hk 72 (360)
.|.|+.|+..+-...=.+.|.
T Consensus 2 p~~C~~C~k~f~~~~~l~~H~ 22 (26)
T 2lvu_A 2 PYVCERCGKRFVQSSQLANHI 22 (26)
Confidence 478888887665555455553
No 51
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=20.71 E-value=27 Score=20.32 Aligned_cols=22 Identities=18% Similarity=0.578 Sum_probs=17.4
Q ss_pred cccCCCCCCccccccccccccc
Q psy15724 52 KYTCPKCELKTCCLNCVNIHKR 73 (360)
Q Consensus 52 kY~CP~C~~~tCSl~C~k~Hk~ 73 (360)
.|.|+.|+..+-...-.+.|..
T Consensus 2 p~~C~~C~k~f~~~~~L~~H~~ 23 (32)
T 2kfq_A 2 AFACPACPKRFMRSDALSKHIK 23 (32)
T ss_dssp CSSSSSSCTTHHHHHTTSSSTT
T ss_pred CCCCCCCCcccCCHHHHHHHHH
Confidence 4899999998877777777764
No 52
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=20.64 E-value=30 Score=28.32 Aligned_cols=13 Identities=46% Similarity=0.884 Sum_probs=10.7
Q ss_pred CCcccCCCCCCcc
Q psy15724 50 PAKYTCPKCELKT 62 (360)
Q Consensus 50 ~~kY~CP~C~~~t 62 (360)
.++|+||.|+...
T Consensus 34 ~aky~CpfCgk~~ 46 (103)
T 4a17_Y 34 HAKYGCPFCGKVA 46 (103)
T ss_dssp HSCEECTTTCCEE
T ss_pred hcCCCCCCCCCce
Confidence 4799999999764
No 53
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=20.57 E-value=22 Score=19.71 Aligned_cols=20 Identities=20% Similarity=0.364 Sum_probs=14.7
Q ss_pred cccCCCCCCccccccccccc
Q psy15724 52 KYTCPKCELKTCCLNCVNIH 71 (360)
Q Consensus 52 kY~CP~C~~~tCSl~C~k~H 71 (360)
.|.|+.|+..+-...-.+.|
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H 21 (30)
T 1paa_A 2 AYACGLCNRAFTRRDLLIRH 21 (30)
T ss_dssp CSBCTTTCCBCSSSHHHHHH
T ss_pred CcCCcccCcccCChHHHHHH
Confidence 48899998877666666666
No 54
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.05 E-value=20 Score=21.63 Aligned_cols=23 Identities=26% Similarity=0.671 Sum_probs=17.4
Q ss_pred CCCcccCCCCCCccccccccccc
Q psy15724 49 EPAKYTCPKCELKTCCLNCVNIH 71 (360)
Q Consensus 49 ~~~kY~CP~C~~~tCSl~C~k~H 71 (360)
++-.|.|+.|+..+-...-.+.|
T Consensus 6 ~~k~~~C~~C~k~f~~~~~L~~H 28 (37)
T 2elm_A 6 SGHLYYCSQCHYSSITKNCLKRH 28 (37)
T ss_dssp SSCEEECSSSSCEEECHHHHHHH
T ss_pred CCcCeECCCCCcccCCHHHHHHH
Confidence 35579999999887776666666
No 55
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=20.02 E-value=23 Score=29.62 Aligned_cols=26 Identities=19% Similarity=0.480 Sum_probs=20.5
Q ss_pred ccCcccCCC--------CCCcccCCCCCCccccc
Q psy15724 40 LGDCEVCAI--------EPAKYTCPKCELKTCCL 65 (360)
Q Consensus 40 ~~~C~vC~~--------~~~kY~CP~C~~~tCSl 65 (360)
.+.|.+|+. ...+|.|+.|.-++|=+
T Consensus 149 ~~~~~~~~~~~~~~v~~~~g~~~c~~c~~~~~~~ 182 (184)
T 1pvm_A 149 QHLCPKCGVGVLEPVYNEKGEIKVFRCSNPACDY 182 (184)
T ss_dssp CCBCTTTSSSBEEEEECTTSCEEEEEESCTTCCC
T ss_pred eeeccccCCccccceEEECCEEEccccCCcccCc
Confidence 567888886 45689999999998854
Done!