RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15724
(360 letters)
>gnl|CDD|203013 pfam04438, zf-HIT, HIT zinc finger. This presumed zinc finger
contains up to 6 cysteine residues that could
coordinate zinc. The domain is named after the HIT
protein. This domain is also found in the Thyroid
receptor interacting protein 3 (TRIP-3) that
specifically interacts with the ligand binding domain
of the thyroid receptor.
Length = 30
Score = 43.8 bits (104), Expect = 2e-06
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 43 CEVCAIEPAKYTCPKCELKTCCLNCVN 69
C VC P+KY CP+C ++ C L C
Sbjct: 5 CSVCG-NPSKYRCPRCGVRYCSLECYK 30
>gnl|CDD|219750 pfam08217, DUF1712, Fungal domain of unknown function (DUF1712).
The function of this family of proteins is unknown.
Length = 466
Score = 32.7 bits (75), Expect = 0.29
Identities = 25/130 (19%), Positives = 36/130 (27%), Gaps = 16/130 (12%)
Query: 80 IRNKVKFIPLQKFSNLELQN-------DFNLLEEVSNSLFKYKRDPVKNSVSMYNKL-PH 131
+ V+ +PL K + L +Q F L SN L+ +Y L H
Sbjct: 154 MLGSVQNLPLDKENYLGIQGFIRNFDSTFGSLPCHSNWLYHDHL--------VYGTLSSH 205
Query: 132 PLHILRKYAYMRKTQVKFLPKLFTQHKINTSCVYKNNLYWRVEWVFVSGNLKHVDEKLID 191
IL Y + ++ + I S N S KL
Sbjct: 206 DTRILYNYTLPILFPYDAISEVGSWTGIRNSPSLFMNYTPSGRVRSGSSENGDSKAKLDG 265
Query: 192 STRLCIPLTA 201
I A
Sbjct: 266 KDGFLISPLA 275
>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger.
Length = 42
Score = 28.1 bits (63), Expect = 0.71
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 43 CEVCAIEPAKYTCPKCELKTCCLNCVNIHKR 73
C+ EPA++ C +C C H+
Sbjct: 6 CDSHGDEPAEFFCEECGALLCRTCDEAEHRG 36
>gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated.
Length = 404
Score = 29.0 bits (66), Expect = 3.6
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 171 WRVEWVFVSGNLKHVDE-----KLIDSTRLC 196
+RV W+ +SG KH ++ S RLC
Sbjct: 247 FRVGWMVLSGPKKHAKGYIEGLDMLASMRLC 277
>gnl|CDD|191669 pfam07014, Hs1pro-1_C, Hs1pro-1 protein C-terminus. This family
represents the C-terminus (approximately 270 residues)
of a number of plant Hs1pro-1 proteins, which are
believed to confer nematode resistance.
Length = 261
Score = 29.0 bits (65), Expect = 3.8
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 12/54 (22%)
Query: 129 LPHPLHILRKYAYMRKTQVKFLPKLFTQHKINTSCVYKNNLYWRVEWVFVSGNL 182
P+ LH L+K Y + K LFT H+I S W++ S L
Sbjct: 28 RPNELHALKKTPYADHIENKENQTLFTIHQILES------------WIYASSKL 69
>gnl|CDD|205010 pfam12675, DUF3795, Protein of unknown function (DUF3795). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria and
archaea. Proteins in this family are typically between
99 and 171 amino acids in length. This protein is
likely to be zinc binding given the conserved
cysteines.
Length = 64
Score = 26.2 bits (58), Expect = 5.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 42 DCEVCAIEPAKYTCPKCELKTCCL 65
+C C K+ C KC++K CC
Sbjct: 21 NCPGCRTGDGKFGCGKCKIKKCCE 44
>gnl|CDD|219634 pfam07906, Toxin_15, ShET2 enterotoxin, N-terminal region. The
members of this family are are sequences that are
similar to the N-terminal half of the ShET2 enterotoxin
produced by Shigella flexneri and Escherichia coli. This
protein was found to confer toxigenicity in the Ussing
chamber, and the N-terminal region was found to be
important for the protein's enterotoxic effect. It is
thought to be a hydrophobic protein that forms inclusion
bodies within the bacterial cell, and may be secreted by
the Mxi system. Most members of this family are
annotated as putative enterotoxins, but one member is a
regulator of acetyl CoA synthetase, and another two
members are annotated as ankyrin-like regulatory
proteins and contain Ank repeats (pfam00023).
Length = 283
Score = 28.5 bits (64), Expect = 5.5
Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 7/99 (7%)
Query: 66 NCVNIHKRELECDGIRNKVKFIPLQKFSNLELQNDFNLLEEVSNSLFKYKRDPVKNSVSM 125
N N H R E D K+K + L+ F +++ L EVSN + +
Sbjct: 171 NVTNTHVR-CEVDN-LEKIKDLSLKDFISVDQYLKSYGLTEVSNIIVADIPKLPDENSVK 228
Query: 126 ----YNKLPH-PLHILRKYAYMRKTQVKFLPKLFTQHKI 159
++LP PL Y M + + L Q K
Sbjct: 229 EKGGVDELPDLPLSPAVIYLLMTMGLTEQIQTLMEQLKN 267
>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain
(CHC3H2); often present in combination with other
motifs, like RING zinc finger, NHL motif, coiled-coil
or RFP domain in functionally unrelated proteins, most
likely mediating protein-protein interaction.
Length = 39
Score = 25.3 bits (56), Expect = 5.9
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 43 CEVCAIEPAKYTCPKCELKTCCLNCVNIHKR 73
C+ EP C C +++H
Sbjct: 3 CDEHGEEPLSLFCETDRALLCVDCDLSVHSG 33
>gnl|CDD|176679 cd07256, HPCD_C_class_II, C-terminal domain of
3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which
catalyses the second step in the degradation of
4-hydroxyphenylacetate to succinate and pyruvate;
belongs to the type I class II family of extradiol
dioxygenases. This subfamily contains the C-terminal,
catalytic, domain of HPCD. HPCD catalyses the second
step in the degradation of 4-hydroxyphenylacetate to
succinate and pyruvate. The aromatic ring of
4-hydroxyphenylacetate is opened by this dioxygenase to
yield the 3,4-diol product,
2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is
a homotetramer and each monomer contains two
structurally homologous barrel-shaped domains at the N-
and C-terminus. The active-site metal is located in the
C-terminal barrel and plays an essential role in the
catalytic mechanism. Most extradiol dioxygenases contain
Fe(II) in their active site, but HPCD can be activated
by either Mn(II) or Fe(II). These enzymes belong to the
type I class II family of extradiol dioxygenases. The
class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases
belong to a different superfamily.
Length = 161
Score = 27.7 bits (62), Expect = 6.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 107 VSNSLFKYKRDPVKNSVSMYN 127
+SN+ F Y RDP + + +Y
Sbjct: 102 ISNAFFLYLRDPDGHRIEIYT 122
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.413
Gapped
Lambda K H
0.267 0.0716 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,691,334
Number of extensions: 1677819
Number of successful extensions: 1233
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1231
Number of HSP's successfully gapped: 17
Length of query: 360
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 262
Effective length of database: 6,590,910
Effective search space: 1726818420
Effective search space used: 1726818420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)