RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15724
(360 letters)
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2;
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.85.1.2
Length = 59
Score = 55.1 bits (132), Expect = 2e-10
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 35 KKVSRLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKR 73
+ G C ++PA+YTCP+C C L C H
Sbjct: 9 EPAGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTHGT 47
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics,
ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 56
Score = 48.9 bits (116), Expect = 3e-08
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 43 CEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNK 83
C +C E KY CP C + C + C HK +C+ +
Sbjct: 15 CVICL-EKPKYRCPACRVPYCSVVCFRKHKE--QCNPETSG 52
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.1 bits (129), Expect = 4e-08
Identities = 54/341 (15%), Positives = 108/341 (31%), Gaps = 92/341 (26%)
Query: 1 MESWKVCFELFKSVHLHTVKMDCTTEQNLPPEVEK----KVSRLGDCEVCAIEPA----- 51
++ + + L +DC Q+LP EV ++S + E A
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCR-PQDLPREVLTTNPRRLSIIA--ESIRDGLATWDNW 347
Query: 52 -KYTCPKCELKTC---CLNCVN--IHKRELECDGI-RNKVKFIPLQKFSNLELQNDFNLL 104
C K L T LN + +++ + + IP S + + +
Sbjct: 348 KHVNCDK--LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-IPTILLSLIWFDVIKSDV 404
Query: 105 EEVSNSLFKY---KRDPVKNSVSMYN----KLPHP-----LH--ILRKYAYMRKTQVKFL 150
V N L KY ++ P ++++S+ + LH I+ Y + L
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 151 PKLFTQ---------HKINTSCVYKNNLYWRVEWVFVSGNLKHVDEKLIDSTRLCIPLTA 201
+ H N + L+ VF+ + + +++K+ + +
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLF---RMVFL--DFRFLEQKIRHDSTAWNASGS 519
Query: 202 HLDQPDLAFYKAADQPDLAFYKAAGINGLLILMKVERSSKFYILDHTLSIAENLKNKCII 261
L+ L L FYK YI D+ + I+
Sbjct: 520 ILN--TLQ--------QLKFYKP------------------YICDNDPKYERLVNA--IL 549
Query: 262 EFPIFYVIFNYEKDMFDIEYTDVGEAKDPRIQSHSQIENGP 302
+F + E+++ +YTD+ ++ E+
Sbjct: 550 DF-----LPKIEENLICSKYTDL-------LRIALMAEDEA 578
Score = 47.5 bits (112), Expect = 5e-06
Identities = 40/309 (12%), Positives = 91/309 (29%), Gaps = 77/309 (24%)
Query: 90 QKFSNLELQNDFN-LLEEVSN---------SLFKYKRDPVKNSVSMYNKL----PHPLHI 135
QKF L+ ++ L+ + ++ +RD + N ++ K P
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 136 LRKYAYMRKTQVKFLPKLFTQ-----------------HKINTSCVYKNNLYWRVEWVFV 178
LR+ +++ + +K+ C ++W +
Sbjct: 140 LRQALL----ELRPAKNVLIDGVLGSGKTWVALDVCLSYKV--QCKMDFKIFW------L 187
Query: 179 S-GNLKHVDEKLIDSTRLCIPLTA-------HLDQPDLAFYKAADQPDLAFYKAAGINGL 230
+ N + L +L + H L + + N L
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 231 LILMKVERSSKFYILDH---TL------SIAENLKNKCIIEFPIFYVIFNYEKD----MF 277
L+L+ V+ + + + L + + L + + D +
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 278 DIEYTDVGEAKDPR--IQSH----SQIENGPKEKLDHVKQTEGEDVHYDCFENEESIDVS 331
++Y D PR + ++ S I ++ L + H +C + I+ S
Sbjct: 308 -LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK----HVNCDKLTTIIESS 362
Query: 332 SE--DTSEI 338
+ +E
Sbjct: 363 LNVLEPAEY 371
Score = 29.1 bits (64), Expect = 3.3
Identities = 8/53 (15%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 296 SQIENGPKEKLDHVKQTEGEDVHYDCFENEESID--VSSEDTSEIIVEPRTIT 346
+ + K+ L + ++ +DC + ++ +S E+ II+ ++
Sbjct: 12 GEHQYQYKDILSVFEDAFVDN--FDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.012
Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 26/101 (25%)
Query: 18 TVKMDCTTEQNLPPEVEKKVSRLGDCEVCAIEPAKYTCPKCELKTCCLNCVN----I--H 71
V + E ++ V R+G +E Y N N
Sbjct: 1816 RVAASFSQE-----ALQYVVERVGKRTGWLVEIVNY------------NVENQQYVAAGD 1858
Query: 72 KRELECDGIRNKVKFIPLQKFSNLELQNDFNLLEEVSNSLF 112
R L+ + N + FI LQK +ELQ + LEEV LF
Sbjct: 1859 LRALDT--VTNVLNFIKLQKIDIIELQKSLS-LEEVEGHLF 1896
Score = 32.3 bits (73), Expect = 0.27
Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 27/94 (28%)
Query: 237 ERSSKFYILDHTLSIAENLKNKCIIEFPI-FYVIF----------NYEKDMFDIEYTDVG 285
R+ + + SI + +I P+ + F NY +F+ D G
Sbjct: 1647 NRADNHFKDTYGFSILD-----IVINNPVNLTIHFGGEKGKRIRENYSAMIFE-TIVD-G 1699
Query: 286 EAKDPRI------QSHSQIENGPKEKLDHVKQTE 313
+ K +I S S K L T+
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRSEKGLLS---ATQ 1730
Score = 32.3 bits (73), Expect = 0.29
Identities = 36/182 (19%), Positives = 57/182 (31%), Gaps = 52/182 (28%)
Query: 178 VSG-NLKHVDEKLIDSTRLCIPLTAHLDQPDLAFYKAADQ-----PDLAFYKAAGINGL- 230
+S + V + ++ T +P + +++ A P + Y GL
Sbjct: 341 ISNLTQEQV-QDYVNKTNSHLPAGKQV---EISLVNGAKNLVVSGPPQSLY------GLN 390
Query: 231 LILMKVERSSKFYILDHTLSIAENLKNKCIIEF-PIFYVIFN--YEKDMFDIEYTDVGE- 286
L L K + S LD + K K F P+ F+ D+ D+ +
Sbjct: 391 LTLRKAKAPSG---LDQSRIPFSERKLKFSNRFLPVA-SPFHSHLLVPASDLINKDLVKN 446
Query: 287 -----AKDPRIQSHSQIENGPKEKLDHVKQTE-GEDVHYDCFENEESIDVSSEDTSEIIV 340
AKD +I P V T G D+ S +S II
Sbjct: 447 NVSFNAKDIQI---------P------VYDTFDGSDLR------VLSGSISERIVDCIIR 485
Query: 341 EP 342
P
Sbjct: 486 LP 487
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 2.3
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 8/32 (25%)
Query: 233 LMKVERSSKFYILDH--TLSIAENLKNKCIIE 262
L K++ S K Y D L+I K +E
Sbjct: 22 LKKLQASLKLYADDSAPALAI------KATME 47
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription
factor, transcription initiation; 2.60A {Saccharomyces
cerevisiae} SCOP: c.66.1.24
Length = 353
Score = 28.4 bits (63), Expect = 3.9
Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 11/103 (10%)
Query: 29 LPPEVEKKVSRLG-------DCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIR 81
L S+ D ++ AI A + + E+
Sbjct: 193 LARPGMHSRSKCSVVREAFTDTKLIAISDANELKGFDSQCIEEWDPILFSAAEI----WP 248
Query: 82 NKVKFIPLQKFSNLELQNDFNLLEEVSNSLFKYKRDPVKNSVS 124
K K I L + ++ D + + V+ L KR P+ +
Sbjct: 249 TKGKPIALVEMDPIDFDFDVDNWDYVTRHLMILKRTPLNTVMD 291
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.413
Gapped
Lambda K H
0.267 0.0492 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,286,017
Number of extensions: 306613
Number of successful extensions: 521
Number of sequences better than 10.0: 1
Number of HSP's gapped: 514
Number of HSP's successfully gapped: 18
Length of query: 360
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 265
Effective length of database: 4,049,298
Effective search space: 1073063970
Effective search space used: 1073063970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.7 bits)