RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15724
         (360 letters)



>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing
          protein 2,  ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 46

 Score = 55.3 bits (133), Expect = 4e-11
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 38 SRLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKR 73
             G C    ++PA+YTCP+C    C L C   H  
Sbjct: 5  GPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTHGT 40


>d2prda_ b.40.5.1 (A:) Inorganic pyrophosphatase {Thermus
           thermophilus [TaxId: 274]}
          Length = 174

 Score = 28.7 bits (64), Expect = 0.70
 Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 14/105 (13%)

Query: 99  NDFNLLEEVS-NSLFKYKRDPVKNSVSMYNKLPHPLHILRKYAYMRKTQVKFLPKL---- 153
              +++ EV   S  KY+ DP   ++ +   LP        Y ++  T  +    L    
Sbjct: 14  EVVHMVIEVPRGSGNKYEYDPDLGAIKLDRVLPGAQFYPGDYGFIPSTLAEDGDPLDGLV 73

Query: 154 FTQHKINTSCVYKNNLYWRVEWVFVSGNLKHVDEKLIDSTRLCIP 198
            + + +    V           V V G L   DEK  D+  + + 
Sbjct: 74  LSTYPLLPGVVV---------EVRVVGLLLMEDEKGGDAKVIGVV 109


>d1jqka_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
          {Rhodospirillum rubrum [TaxId: 1085]}
          Length = 610

 Score = 26.0 bits (57), Expect = 8.4
 Identities = 4/15 (26%), Positives = 5/15 (33%)

Query: 55 CPKCELKTCCLNCVN 69
          C       CC  C+ 
Sbjct: 14 CGFGSAGLCCRICLK 28


>d1su7a_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
          {Carboxydothermus hydrogenoformans [TaxId: 129958]}
          Length = 633

 Score = 25.9 bits (57), Expect = 9.8
 Identities = 5/15 (33%), Positives = 7/15 (46%)

Query: 55 CPKCELKTCCLNCVN 69
          C   E   CC +C+ 
Sbjct: 36 CGFGETGLCCRHCLQ 50


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0605    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,338,261
Number of extensions: 64049
Number of successful extensions: 138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 10
Length of query: 360
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 274
Effective length of database: 1,226,816
Effective search space: 336147584
Effective search space used: 336147584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)