BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15725
(355 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|307189589|gb|EFN73950.1| Ras-related protein Rab-6A [Camponotus floridanus]
gi|307196069|gb|EFN77792.1| Ras-related protein Rab-6A [Harpegnathos saltator]
gi|332025967|gb|EGI66120.1| Ras-related protein Rab-6A [Acromyrmex echinatior]
Length = 209
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 165/230 (71%), Positives = 166/230 (72%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MSSSGDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
ANSFHQTSKWIDDVRTERGSDVIIML
Sbjct: 98 ANSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 264 bits (674), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 126/128 (98%), Positives = 127/128 (99%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS
Sbjct: 120 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 179
Query: 348 TENKPPED 355
TENKPPED
Sbjct: 180 TENKPPED 187
>gi|345494735|ref|XP_001604718.2| PREDICTED: ras-related protein Rab-6A-like [Nasonia vitripennis]
Length = 209
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 165/230 (71%), Positives = 166/230 (72%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MSSSGDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
ANSFHQTSKWIDDVRTERGSDVIIML
Sbjct: 98 ANSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 264 bits (674), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 126/128 (98%), Positives = 127/128 (99%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS
Sbjct: 120 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 179
Query: 348 TENKPPED 355
TENKPPED
Sbjct: 180 TENKPPED 187
>gi|157112176|ref|XP_001657425.1| rab6 [Aedes aegypti]
gi|108878120|gb|EAT42345.1| AAEL006091-PB [Aedes aegypti]
Length = 210
Score = 307 bits (787), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 165/230 (71%), Positives = 166/230 (72%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MSSSGDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
ANSFHQTSKWIDDVRTERGSDVIIML
Sbjct: 98 ANSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 263 bits (672), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 126/128 (98%), Positives = 127/128 (99%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS
Sbjct: 120 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 179
Query: 348 TENKPPED 355
TENKPPED
Sbjct: 180 TENKPPED 187
>gi|157112172|ref|XP_001657423.1| rab6 [Aedes aegypti]
gi|157112174|ref|XP_001657424.1| rab6 [Aedes aegypti]
gi|108878119|gb|EAT42344.1| AAEL006091-PA [Aedes aegypti]
gi|403182767|gb|EJY57618.1| AAEL006091-PC [Aedes aegypti]
Length = 209
Score = 307 bits (787), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 165/230 (71%), Positives = 166/230 (72%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MSSSGDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
ANSFHQTSKWIDDVRTERGSDVIIML
Sbjct: 98 ANSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 126/128 (98%), Positives = 127/128 (99%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS
Sbjct: 120 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 179
Query: 348 TENKPPED 355
TENKPPED
Sbjct: 180 TENKPPED 187
>gi|158297778|ref|XP_001238010.2| AGAP011363-PA [Anopheles gambiae str. PEST]
gi|157014741|gb|EAU76291.2| AGAP011363-PA [Anopheles gambiae str. PEST]
Length = 209
Score = 307 bits (787), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 165/230 (71%), Positives = 166/230 (72%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MSSSGDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
ANSFHQTSKWIDDVRTERGSDVIIML
Sbjct: 98 ANSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 126/128 (98%), Positives = 127/128 (99%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS
Sbjct: 120 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 179
Query: 348 TENKPPED 355
TENKPPED
Sbjct: 180 TENKPPED 187
>gi|189233646|ref|XP_972453.2| PREDICTED: similar to rab6 [Tribolium castaneum]
Length = 324
Score = 307 bits (786), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 164/230 (71%), Positives = 166/230 (72%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+SGDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 116 MSTSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 152
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 153 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 212
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
ANSFHQTSKWIDDVRTERGSDVIIML
Sbjct: 213 ANSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 238
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 239 -------VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 281
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 126/128 (98%), Positives = 127/128 (99%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV
Sbjct: 175 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 234
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS
Sbjct: 235 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 294
Query: 348 TENKPPED 355
TENKPPED
Sbjct: 295 TENKPPED 302
>gi|270014377|gb|EFA10825.1| hypothetical protein TcasGA2_TC001600 [Tribolium castaneum]
Length = 209
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 164/230 (71%), Positives = 166/230 (72%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+SGDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSTSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
ANSFHQTSKWIDDVRTERGSDVIIML
Sbjct: 98 ANSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 126/128 (98%), Positives = 127/128 (99%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS
Sbjct: 120 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 179
Query: 348 TENKPPED 355
TENKPPED
Sbjct: 180 TENKPPED 187
>gi|340718722|ref|XP_003397812.1| PREDICTED: ras-related protein Rab-6A-like isoform 1 [Bombus
terrestris]
gi|350409818|ref|XP_003488853.1| PREDICTED: ras-related protein Rab-6A-like isoform 2 [Bombus
impatiens]
Length = 209
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 163/230 (70%), Positives = 164/230 (71%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MSSSGDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
ANSFHQTSKWIDDVRTERGSDVIIML
Sbjct: 98 ANSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLGDKRQVSMEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 260 bits (664), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 124/128 (96%), Positives = 125/128 (97%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS
Sbjct: 120 IIMLVGNKTDLGDKRQVSMEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 179
Query: 348 TENKPPED 355
TENKPPED
Sbjct: 180 TENKPPED 187
>gi|383848737|ref|XP_003700004.1| PREDICTED: ras-related protein Rab-6A-like isoform 1 [Megachile
rotundata]
Length = 209
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 163/230 (70%), Positives = 164/230 (71%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MSSSGDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSFHQTSKWIDDVRTERGSDVIIML
Sbjct: 98 PNSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLSDKRQVSMEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 260 bits (664), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 124/128 (96%), Positives = 125/128 (97%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSFHQTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNPNSFHQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLSDKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS
Sbjct: 120 IIMLVGNKTDLSDKRQVSMEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 179
Query: 348 TENKPPED 355
TENKPPED
Sbjct: 180 TENKPPED 187
>gi|48096836|ref|XP_392533.1| PREDICTED: ras-related protein Rab-6A [Apis mellifera]
gi|380012436|ref|XP_003690289.1| PREDICTED: ras-related protein Rab-6A-like [Apis florea]
Length = 209
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 163/230 (70%), Positives = 164/230 (71%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MSSSGDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
ANSFHQTSKWIDDVRTERGSDVIIML
Sbjct: 98 ANSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLGDKRQVSMEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 260 bits (664), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 124/128 (96%), Positives = 125/128 (97%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS
Sbjct: 120 IIMLVGNKTDLGDKRQVSMEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 179
Query: 348 TENKPPED 355
TENKPPED
Sbjct: 180 TENKPPED 187
>gi|340718724|ref|XP_003397813.1| PREDICTED: ras-related protein Rab-6A-like isoform 2 [Bombus
terrestris]
gi|350409814|ref|XP_003488852.1| PREDICTED: ras-related protein Rab-6A-like isoform 1 [Bombus
impatiens]
Length = 211
Score = 304 bits (778), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 163/230 (70%), Positives = 164/230 (71%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MSSSGDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
ANSFHQTSKWIDDVRTERGSDVIIML
Sbjct: 98 ANSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLGDKRQVSMEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 124/128 (96%), Positives = 125/128 (97%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS
Sbjct: 120 IIMLVGNKTDLGDKRQVSMEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 179
Query: 348 TENKPPED 355
TENKPPED
Sbjct: 180 TENKPPED 187
>gi|383848739|ref|XP_003700005.1| PREDICTED: ras-related protein Rab-6A-like isoform 2 [Megachile
rotundata]
Length = 211
Score = 304 bits (778), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 163/230 (70%), Positives = 164/230 (71%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MSSSGDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSFHQTSKWIDDVRTERGSDVIIML
Sbjct: 98 PNSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLSDKRQVSMEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 124/128 (96%), Positives = 125/128 (97%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSFHQTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNPNSFHQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLSDKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS
Sbjct: 120 IIMLVGNKTDLSDKRQVSMEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 179
Query: 348 TENKPPED 355
TENKPPED
Sbjct: 180 TENKPPED 187
>gi|325303662|tpg|DAA34344.1| TPA_inf: Rab6 subfamily protein [Amblyomma variegatum]
Length = 174
Score = 303 bits (776), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 162/230 (70%), Positives = 166/230 (72%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MSSSGDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
ANSFHQTSKWIDDVRTERG+DVIIML
Sbjct: 98 ANSFHQTSKWIDDVRTERGNDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKRQV+TEEGERKAKELNVMFIETSAK+GYNVKQ+
Sbjct: 124 -------VGNKTDLSDKRQVTTEEGERKAKELNVMFIETSAKSGYNVKQL 166
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 110/115 (95%), Positives = 114/115 (99%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG+DV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGNDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
IIMLVGNKTDLSDKRQV+TEEGERKAKELNVMFIETSAK+GYNVKQLFRRVAAAL
Sbjct: 120 IIMLVGNKTDLSDKRQVTTEEGERKAKELNVMFIETSAKSGYNVKQLFRRVAAAL 174
>gi|241723781|ref|XP_002404303.1| RAS-related protein, putative [Ixodes scapularis]
gi|215505389|gb|EEC14883.1| RAS-related protein, putative [Ixodes scapularis]
gi|346471859|gb|AEO35774.1| hypothetical protein [Amblyomma maculatum]
Length = 208
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 162/230 (70%), Positives = 166/230 (72%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MSSSGDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
ANSFHQTSKWIDDVRTERG+DVIIML
Sbjct: 98 ANSFHQTSKWIDDVRTERGNDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKRQV+TEEGERKAKELNVMFIETSAK+GYNVKQ+
Sbjct: 124 -------VGNKTDLSDKRQVTTEEGERKAKELNVMFIETSAKSGYNVKQL 166
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 115/122 (94%), Positives = 121/122 (99%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG+DV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGNDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLSDKRQV+TEEGERKAKELNVMFIETSAK+GYNVKQLFRRVAAALPGM++
Sbjct: 120 IIMLVGNKTDLSDKRQVTTEEGERKAKELNVMFIETSAKSGYNVKQLFRRVAAALPGMEN 179
Query: 348 TE 349
TE
Sbjct: 180 TE 181
>gi|395335642|gb|AFN54651.1| Rab GTPase [Litopenaeus vannamei]
Length = 211
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 162/230 (70%), Positives = 164/230 (71%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS SG+FGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSMSGEFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDF SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFXSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
ANSFHQTSKWIDDVRTERGSDVIIML
Sbjct: 98 ANSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 119/124 (95%), Positives = 122/124 (98%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+
Sbjct: 120 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMEP 179
Query: 348 TENK 351
T+NK
Sbjct: 180 TDNK 183
>gi|114052691|ref|NP_001040270.1| ras small monomeric GTPase Rab6 [Bombyx mori]
gi|87248577|gb|ABD36341.1| ras small monomeric GTPase Rab6 [Bombyx mori]
Length = 209
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 161/230 (70%), Positives = 166/230 (72%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+SG+FGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSTSGEFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
ANSFHQTSKWIDDVRTERGSDVIIML
Sbjct: 98 ANSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKRQVSTEEG++KAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLSDKRQVSTEEGDKKAKELNVMFIETSAKAGYNVKQL 166
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 123/128 (96%), Positives = 126/128 (98%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLSDKRQVSTEEG++KAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS
Sbjct: 120 IIMLVGNKTDLSDKRQVSTEEGDKKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 179
Query: 348 TENKPPED 355
ENKPPED
Sbjct: 180 AENKPPED 187
>gi|195443010|ref|XP_002069232.1| GK21078 [Drosophila willistoni]
gi|194165317|gb|EDW80218.1| GK21078 [Drosophila willistoni]
Length = 208
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 162/228 (71%), Positives = 163/228 (71%), Gaps = 64/228 (28%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
SSGDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDSFD
Sbjct: 2 SSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFD 38
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN N
Sbjct: 39 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTN 98
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SFHQTSKWIDDVRTERGSDVIIML
Sbjct: 99 SFHQTSKWIDDVRTERGSDVIIML------------------------------------ 122
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 123 -----VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 165
Score = 257 bits (656), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 124/128 (96%), Positives = 125/128 (97%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSFHQTSKWIDDVRTERGSDV
Sbjct: 59 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDV 118
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS
Sbjct: 119 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 178
Query: 348 TENKPPED 355
TENKP ED
Sbjct: 179 TENKPSED 186
>gi|17137220|ref|NP_477172.1| Rab6 [Drosophila melanogaster]
gi|125985285|ref|XP_001356406.1| GA19714 [Drosophila pseudoobscura pseudoobscura]
gi|194765981|ref|XP_001965103.1| GF23429 [Drosophila ananassae]
gi|194861334|ref|XP_001969761.1| GG10272 [Drosophila erecta]
gi|195035425|ref|XP_001989178.1| GH10191 [Drosophila grimshawi]
gi|195147148|ref|XP_002014542.1| GL18897 [Drosophila persimilis]
gi|195351007|ref|XP_002042028.1| GM26307 [Drosophila sechellia]
gi|195387894|ref|XP_002052627.1| GJ20647 [Drosophila virilis]
gi|195472321|ref|XP_002088449.1| GE12402 [Drosophila yakuba]
gi|2313037|dbj|BAA21707.1| rab6 [Drosophila melanogaster]
gi|7297923|gb|AAF53168.1| Rab6 [Drosophila melanogaster]
gi|16648070|gb|AAL25300.1| GH09086p [Drosophila melanogaster]
gi|54644730|gb|EAL33470.1| GA19714 [Drosophila pseudoobscura pseudoobscura]
gi|190617713|gb|EDV33237.1| GF23429 [Drosophila ananassae]
gi|190661628|gb|EDV58820.1| GG10272 [Drosophila erecta]
gi|193905178|gb|EDW04045.1| GH10191 [Drosophila grimshawi]
gi|194106495|gb|EDW28538.1| GL18897 [Drosophila persimilis]
gi|194123852|gb|EDW45895.1| GM26307 [Drosophila sechellia]
gi|194149084|gb|EDW64782.1| GJ20647 [Drosophila virilis]
gi|194174550|gb|EDW88161.1| GE12402 [Drosophila yakuba]
gi|220945102|gb|ACL85094.1| Rab6-PA [synthetic construct]
gi|220954838|gb|ACL89962.1| Rab6-PA [synthetic construct]
Length = 208
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 162/228 (71%), Positives = 163/228 (71%), Gaps = 64/228 (28%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
SSGDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDSFD
Sbjct: 2 SSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFD 38
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN N
Sbjct: 39 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTN 98
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SFHQTSKWIDDVRTERGSDVIIML
Sbjct: 99 SFHQTSKWIDDVRTERGSDVIIML------------------------------------ 122
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 123 -----VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 165
Score = 257 bits (656), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 124/128 (96%), Positives = 125/128 (97%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSFHQTSKWIDDVRTERGSDV
Sbjct: 59 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDV 118
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS
Sbjct: 119 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 178
Query: 348 TENKPPED 355
TENKP ED
Sbjct: 179 TENKPSED 186
>gi|289741525|gb|ADD19510.1| Rab protein 6 [Glossina morsitans morsitans]
Length = 208
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 161/228 (70%), Positives = 163/228 (71%), Gaps = 64/228 (28%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
SSGDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDSFD
Sbjct: 2 SSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFD 38
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN N
Sbjct: 39 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTN 98
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SFHQTSKWIDDVRTERGSDVIIML
Sbjct: 99 SFHQTSKWIDDVRTERGSDVIIML------------------------------------ 122
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKRQVSTEEGERKAKELNVMF+ETSAKAGYNVKQ+
Sbjct: 123 -----VGNKTDLSDKRQVSTEEGERKAKELNVMFVETSAKAGYNVKQL 165
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 122/129 (94%), Positives = 124/129 (96%), Gaps = 1/129 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSFHQTSKWIDDVRTERGSDV
Sbjct: 59 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDV 118
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF+ETSAKAGYNVKQLFRRVAAALPGMDS
Sbjct: 119 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFVETSAKAGYNVKQLFRRVAAALPGMDS 178
Query: 348 -TENKPPED 355
TE KP ED
Sbjct: 179 TTETKPSED 187
>gi|427787277|gb|JAA59090.1| Putative rab-protein 6 [Rhipicephalus pulchellus]
Length = 208
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 161/230 (70%), Positives = 166/230 (72%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MSSSGDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
ANSFHQTSKWIDDVRTERG+DVIIML
Sbjct: 98 ANSFHQTSKWIDDVRTERGNDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKRQV+TE+GERKAKELNVMFIETSAK+GYNVKQ+
Sbjct: 124 -------VGNKTDLSDKRQVTTEDGERKAKELNVMFIETSAKSGYNVKQL 166
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 114/122 (93%), Positives = 121/122 (99%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG+DV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGNDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLSDKRQV+TE+GERKAKELNVMFIETSAK+GYNVKQLFRRVAAALPGM++
Sbjct: 120 IIMLVGNKTDLSDKRQVTTEDGERKAKELNVMFIETSAKSGYNVKQLFRRVAAALPGMEN 179
Query: 348 TE 349
TE
Sbjct: 180 TE 181
>gi|357619652|gb|EHJ72138.1| ras small monomeric GTPase Rab6 [Danaus plexippus]
Length = 208
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 161/230 (70%), Positives = 166/230 (72%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+SG+FGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSTSGEFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
ANSFHQTSKWIDDVRTERGSDVIIML
Sbjct: 98 ANSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKRQVSTE+G+RKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLSDKRQVSTEDGDRKAKELNVMFIETSAKAGYNVKQL 166
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 122/128 (95%), Positives = 126/128 (98%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLSDKRQVSTE+G+RKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS
Sbjct: 120 IIMLVGNKTDLSDKRQVSTEDGDRKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 179
Query: 348 TENKPPED 355
E+KPPED
Sbjct: 180 AESKPPED 187
>gi|390362735|ref|XP_791590.3| PREDICTED: ras-related protein Rab-6A-like [Strongylocentrotus
purpuratus]
Length = 211
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 161/230 (70%), Positives = 164/230 (71%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MSSSGDF NPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSSSGDFSNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
ANSFHQTSKWIDDVRTERGSDVIIML
Sbjct: 98 ANSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS +EGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIDEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 115/126 (91%), Positives = 120/126 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS +EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIDEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPP 353
+ P
Sbjct: 180 ADQTKP 185
>gi|339717366|pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
gi|339717367|pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 300 bits (769), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 162/228 (71%), Positives = 163/228 (71%), Gaps = 64/228 (28%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
SSGDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDSFD
Sbjct: 4 SSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFD 40
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN N
Sbjct: 41 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTN 100
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SFHQTSKWIDDVRTERGSDVIIML
Sbjct: 101 SFHQTSKWIDDVRTERGSDVIIML------------------------------------ 124
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 125 -----VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 167
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 116/119 (97%), Positives = 117/119 (98%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSFHQTSKWIDDVRTERGSDV
Sbjct: 61 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDV 120
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD
Sbjct: 121 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 179
>gi|195114920|ref|XP_002002015.1| GI14260 [Drosophila mojavensis]
gi|193912590|gb|EDW11457.1| GI14260 [Drosophila mojavensis]
Length = 208
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 161/228 (70%), Positives = 163/228 (71%), Gaps = 64/228 (28%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
SSGDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDSFD
Sbjct: 2 SSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFD 38
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN N
Sbjct: 39 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTN 98
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SFHQTSKWIDDVRTERGSDVIIML
Sbjct: 99 SFHQTSKWIDDVRTERGSDVIIML------------------------------------ 122
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKRQVSTEEGERKAK+LNVMFIETSAKAGYNVKQ+
Sbjct: 123 -----VGNKTDLSDKRQVSTEEGERKAKDLNVMFIETSAKAGYNVKQL 165
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 123/128 (96%), Positives = 125/128 (97%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSFHQTSKWIDDVRTERGSDV
Sbjct: 59 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDV 118
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLSDKRQVSTEEGERKAK+LNVMFIETSAKAGYNVKQLFRRVAAALPGMDS
Sbjct: 119 IIMLVGNKTDLSDKRQVSTEEGERKAKDLNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 178
Query: 348 TENKPPED 355
TENKP ED
Sbjct: 179 TENKPSED 186
>gi|85002141|gb|ABC68472.1| Rab6A [Marsupenaeus japonicus]
Length = 212
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 160/227 (70%), Positives = 163/227 (71%), Gaps = 64/227 (28%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
SG+FGNPLRKFKLVFLGEQSVGKTSL ITRFMYDSFDN
Sbjct: 2 SGEFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDN 38
Query: 64 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS
Sbjct: 39 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 98
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
FHQTSKWIDDVRTERGSDVII+L
Sbjct: 99 FHQTSKWIDDVRTERGSDVIIVL------------------------------------- 121
Query: 184 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 122 ----VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 164
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 120/124 (96%), Positives = 123/124 (99%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV
Sbjct: 58 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 118 IIVLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 177
Query: 348 TENK 351
TENK
Sbjct: 178 TENK 181
>gi|240848863|ref|NP_001155439.1| rab6-like [Acyrthosiphon pisum]
gi|239788473|dbj|BAH70916.1| ACYPI001698 [Acyrthosiphon pisum]
Length = 209
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 160/230 (69%), Positives = 163/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MSSSGDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
ANSFHQTSKWIDDVRTERGSDVIIML
Sbjct: 98 ANSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQV E+GE KAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLTDKRQVLAEDGEHKAKELNVMFIETSAKAGYNVKQL 166
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 118/128 (92%), Positives = 122/128 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQV E+GE KAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD
Sbjct: 120 IIMLVGNKTDLTDKRQVLAEDGEHKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDV 179
Query: 348 TENKPPED 355
EN+PPED
Sbjct: 180 AENRPPED 187
>gi|242005911|ref|XP_002423803.1| GTP-binding nuclear protein RAN1, putative [Pediculus humanus
corporis]
gi|212507019|gb|EEB11065.1| GTP-binding nuclear protein RAN1, putative [Pediculus humanus
corporis]
Length = 209
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 161/230 (70%), Positives = 164/230 (71%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MSSSGDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
ANSFHQTSKWIDDVRTERGSDVIIML
Sbjct: 98 ANSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKRQVS+EEG +KAKELNV FIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLSDKRQVSSEEGVKKAKELNVKFIETSAKAGYNVKQL 166
Score = 254 bits (648), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 122/128 (95%), Positives = 125/128 (97%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLSDKRQVS+EEG +KAKELNV FIETSAKAGYNVKQLFRRVAAALPGMDS
Sbjct: 120 IIMLVGNKTDLSDKRQVSSEEGVKKAKELNVKFIETSAKAGYNVKQLFRRVAAALPGMDS 179
Query: 348 TENKPPED 355
TENKPPED
Sbjct: 180 TENKPPED 187
>gi|48766845|gb|AAT46563.1| Rab [Marsupenaeus japonicus]
Length = 214
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 160/227 (70%), Positives = 163/227 (71%), Gaps = 64/227 (28%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
SG+FGNPLRKFKLVFLGEQSVGKTSL ITRFMYDSFDN
Sbjct: 2 SGEFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDN 38
Query: 64 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS
Sbjct: 39 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 98
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
FHQTSKWIDDVRTERGSDVII+L
Sbjct: 99 FHQTSKWIDDVRTERGSDVIIVL------------------------------------- 121
Query: 184 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 122 ----VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 164
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 105/108 (97%), Positives = 107/108 (99%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV
Sbjct: 58 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
II+LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF
Sbjct: 118 IIVLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 165
>gi|291235598|ref|XP_002737729.1| PREDICTED: Rab-protein 6-like [Saccoglossus kowalevskii]
Length = 210
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 160/230 (69%), Positives = 163/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MSSSGDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
ANSFHQTSKWIDDVRTERGSDVIIML
Sbjct: 98 ANSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS +EGERKAKELNVM IETSAK GYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIDEGERKAKELNVMHIETSAKTGYNVKQL 166
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 114/124 (91%), Positives = 118/124 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS +EGERKAKELNVM IETSAK GYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIDEGERKAKELNVMHIETSAKTGYNVKQLFRRVAAALPGMES 179
Query: 348 TENK 351
E K
Sbjct: 180 QEQK 183
>gi|239788471|dbj|BAH70915.1| ACYPI001698 [Acyrthosiphon pisum]
Length = 210
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 160/230 (69%), Positives = 163/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MSSSGDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
ANSFHQTSKWIDDVRTERGSDVIIML
Sbjct: 98 ANSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQV E+GE KAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLTDKRQVLAEDGEHKAKELNVMFIETSAKAGYNVKQL 166
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 118/128 (92%), Positives = 122/128 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQV E+GE KAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD
Sbjct: 120 IIMLVGNKTDLTDKRQVLAEDGEHKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDV 179
Query: 348 TENKPPED 355
EN+PPED
Sbjct: 180 AENRPPED 187
>gi|405963194|gb|EKC28791.1| Ras-related protein Rab-6B [Crassostrea gigas]
Length = 209
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 158/230 (68%), Positives = 165/230 (71%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MSSSG+FGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSSSGEFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
ANSF QTSKWIDDVRTERGSDVIIML
Sbjct: 98 ANSFQQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKRQ++TEEGERKAKEL+VMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLSDKRQITTEEGERKAKELSVMFIETSAKAGYNVKQL 166
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 114/127 (89%), Positives = 121/127 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITNANSF QTSKWIDDVRTERGSDV
Sbjct: 60 RTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNANSFQQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLSDKRQ++TEEGERKAKEL+VMFIETSAKAGYNVKQLFRRVAAALPGM+
Sbjct: 120 IIMLVGNKTDLSDKRQITTEEGERKAKELSVMFIETSAKAGYNVKQLFRRVAAALPGMEQ 179
Query: 348 TENKPPE 354
TE K E
Sbjct: 180 TEPKKGE 186
>gi|321471489|gb|EFX82462.1| hypothetical protein DAPPUDRAFT_128059 [Daphnia pulex]
Length = 208
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 159/230 (69%), Positives = 164/230 (71%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
M++S +F NPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MTTSNEFSNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
ANSFHQTSKWIDDVRTERGSDVIIML
Sbjct: 98 ANSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKRQVSTEEGERKA+ELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLSDKRQVSTEEGERKARELNVMFIETSAKAGYNVKQL 166
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 120/128 (93%), Positives = 125/128 (97%), Gaps = 1/128 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLSDKRQVSTEEGERKA+ELNVMFIETSAKAGYNVKQLFRRVAAALPGM++
Sbjct: 120 IIMLVGNKTDLSDKRQVSTEEGERKARELNVMFIETSAKAGYNVKQLFRRVAAALPGMEA 179
Query: 348 TENKPPED 355
+ KPPED
Sbjct: 180 -DKKPPED 186
>gi|163915527|gb|AAI57380.1| Rab6a protein [Danio rerio]
Length = 208
Score = 297 bits (760), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 158/230 (68%), Positives = 163/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS++GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAAGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 116/128 (90%), Positives = 122/128 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPED 355
T++K ED
Sbjct: 180 TQDKSRED 187
>gi|387016274|gb|AFJ50256.1| GTP-binding protein [Crotalus adamanteus]
Length = 208
Score = 296 bits (759), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 158/230 (68%), Positives = 162/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 116/128 (90%), Positives = 122/128 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPED 355
T++K ED
Sbjct: 180 TQDKSRED 187
>gi|83751822|gb|ABC42924.1| GTP-binding protein [Anas platyrhynchos]
Length = 208
Score = 296 bits (758), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 158/230 (68%), Positives = 162/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 116/128 (90%), Positives = 122/128 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPED 355
T++K ED
Sbjct: 180 TQDKSRED 187
>gi|395814868|ref|XP_003780961.1| PREDICTED: ras-related protein Rab-6A isoform 2 [Otolemur
garnettii]
Length = 208
Score = 296 bits (758), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 158/230 (68%), Positives = 162/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 115/128 (89%), Positives = 122/128 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 180 TQDRSRED 187
>gi|291384296|ref|XP_002708751.1| PREDICTED: RAB6A, member RAS oncogene family-like isoform 2
[Oryctolagus cuniculus]
gi|301759055|ref|XP_002915364.1| PREDICTED: ras-related protein Rab-6A-like isoform 2 [Ailuropoda
melanoleuca]
gi|332211361|ref|XP_003254788.1| PREDICTED: ras-related protein Rab-6A isoform 1 [Nomascus
leucogenys]
gi|426245107|ref|XP_004016355.1| PREDICTED: ras-related protein Rab-6A [Ovis aries]
gi|296479823|tpg|DAA21938.1| TPA: RAB6A, member RAS oncogene family-like isoform 2 [Bos taurus]
gi|355566853|gb|EHH23232.1| hypothetical protein EGK_06662 [Macaca mulatta]
gi|355752448|gb|EHH56568.1| hypothetical protein EGM_06013 [Macaca fascicularis]
gi|380788413|gb|AFE66082.1| ras-related protein Rab-6A isoform b [Macaca mulatta]
gi|380788417|gb|AFE66084.1| ras-related protein Rab-6A isoform b [Macaca mulatta]
Length = 208
Score = 296 bits (758), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 158/230 (68%), Positives = 162/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 115/128 (89%), Positives = 122/128 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 180 TQDRSRED 187
>gi|38679888|ref|NP_942599.1| ras-related protein Rab-6A isoform b [Homo sapiens]
gi|197102660|ref|NP_001125644.1| ras-related protein Rab-6A [Pongo abelii]
gi|397487240|ref|XP_003814713.1| PREDICTED: ras-related protein Rab-6A isoform 1 [Pan paniscus]
gi|131796|sp|P20340.3|RAB6A_HUMAN RecName: Full=Ras-related protein Rab-6A; Short=Rab-6
gi|75055038|sp|Q5RAV6.3|RAB6A_PONAB RecName: Full=Ras-related protein Rab-6A
gi|4585565|gb|AAD25535.1|AF130986_1 RAS-related protein RAB6 [Homo sapiens]
gi|20379054|gb|AAM21087.1|AF498939_1 small GTP binding protein RAB6A [Homo sapiens]
gi|550072|gb|AAA60246.1| GTP-binding protein [Homo sapiens]
gi|54696264|gb|AAV38504.1| RAB6A, member RAS oncogene family [Homo sapiens]
gi|55728729|emb|CAH91104.1| hypothetical protein [Pongo abelii]
gi|61356023|gb|AAX41200.1| RAB6A member RAS oncogene family [synthetic construct]
gi|66911837|gb|AAH96818.1| RAB6A, member RAS oncogene family [Homo sapiens]
gi|119595313|gb|EAW74907.1| RAB6A, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|119595314|gb|EAW74908.1| RAB6A, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|119595316|gb|EAW74910.1| RAB6A, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|119595318|gb|EAW74912.1| RAB6A, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|158260519|dbj|BAF82437.1| unnamed protein product [Homo sapiens]
gi|158261287|dbj|BAF82821.1| unnamed protein product [Homo sapiens]
gi|190692045|gb|ACE87797.1| RAB6A, member RAS oncogene family protein [synthetic construct]
gi|254071271|gb|ACT64395.1| RAB6A, member RAS oncogene family protein [synthetic construct]
gi|261860502|dbj|BAI46773.1| RAB6A, member RAS oncogene family [synthetic construct]
Length = 208
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 158/230 (68%), Positives = 162/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 115/128 (89%), Positives = 122/128 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 180 TQDRSRED 187
>gi|13195674|ref|NP_077249.1| ras-related protein Rab-6A isoform 2 [Mus musculus]
gi|13638404|sp|P35279.4|RAB6A_MOUSE RecName: Full=Ras-related protein Rab-6A; Short=Rab-6
gi|313104164|sp|Q9WVB1.2|RAB6A_RAT RecName: Full=Ras-related protein Rab-6A; Short=Rab-6
gi|7670415|dbj|BAA95059.1| unnamed protein product [Mus musculus]
gi|26341820|dbj|BAC34572.1| unnamed protein product [Mus musculus]
gi|26350389|dbj|BAC38834.1| unnamed protein product [Mus musculus]
gi|26350969|dbj|BAC39121.1| unnamed protein product [Mus musculus]
gi|74144412|dbj|BAE36058.1| unnamed protein product [Mus musculus]
gi|74146903|dbj|BAE41406.1| unnamed protein product [Mus musculus]
gi|74227574|dbj|BAE35649.1| unnamed protein product [Mus musculus]
gi|112292961|dbj|BAF02858.1| Rab6A [Mus musculus]
gi|148684515|gb|EDL16462.1| RAB6, member RAS oncogene family, isoform CRA_a [Mus musculus]
gi|148684520|gb|EDL16467.1| RAB6, member RAS oncogene family, isoform CRA_a [Mus musculus]
gi|149068773|gb|EDM18325.1| rCG39700, isoform CRA_b [Rattus norvegicus]
gi|149068775|gb|EDM18327.1| rCG39700, isoform CRA_b [Rattus norvegicus]
Length = 208
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 158/230 (68%), Positives = 162/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 115/128 (89%), Positives = 122/128 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 180 TQDRSRED 187
>gi|126327867|ref|XP_001363218.1| PREDICTED: ras-related protein Rab-6A-like isoform 2 [Monodelphis
domestica]
Length = 208
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 158/230 (68%), Positives = 162/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 116/128 (90%), Positives = 122/128 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPED 355
T++K ED
Sbjct: 180 TQDKSRED 187
>gi|213511394|ref|NP_001133408.1| RAB6A, member RAS oncogene family [Salmo salar]
gi|209153892|gb|ACI33178.1| Ras-related protein Rab-6A [Salmo salar]
Length = 208
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 157/230 (68%), Positives = 163/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS++GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAAGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQV+ EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVAIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 115/128 (89%), Positives = 122/128 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQV+ EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVAIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPED 355
T++K ED
Sbjct: 180 TQDKSRED 187
>gi|196002958|ref|XP_002111346.1| rab6 [Trichoplax adhaerens]
gi|190585245|gb|EDV25313.1| rab6 [Trichoplax adhaerens]
Length = 208
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 158/230 (68%), Positives = 164/230 (71%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
M+SS DFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MTSSADFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVV+DITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVFDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
ANSFHQTSKWIDDVRTERG+DVIIML
Sbjct: 98 ANSFHQTSKWIDDVRTERGNDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVSTEEGE KAKELNVMFIETSAKAG+NVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSTEEGENKAKELNVMFIETSAKAGHNVKQL 166
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 112/123 (91%), Positives = 120/123 (97%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVV+DITNANSFHQTSKWIDDVRTERG+DV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVFDITNANSFHQTSKWIDDVRTERGNDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVSTEEGE KAKELNVMFIETSAKAG+NVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSTEEGENKAKELNVMFIETSAKAGHNVKQLFRRVAAALPGMES 179
Query: 348 TEN 350
++
Sbjct: 180 AQD 182
>gi|359322436|ref|XP_003639844.1| PREDICTED: ras-related protein Rab-6A [Canis lupus familiaris]
Length = 208
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 157/230 (68%), Positives = 162/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 114/128 (89%), Positives = 122/128 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTIRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 180 TQDRSRED 187
>gi|393910638|gb|EJD75978.1| Ras-like protein [Loa loa]
Length = 207
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 158/227 (69%), Positives = 162/227 (71%), Gaps = 64/227 (28%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
+ DFGNPL+KFKLVFLGEQSVGKTSL ITRFMYDSFDN
Sbjct: 2 ASDFGNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDN 38
Query: 64 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS
Sbjct: 39 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 98
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
FHQTSKWIDDVRTERGSDVIIML
Sbjct: 99 FHQTSKWIDDVRTERGSDVIIML------------------------------------- 121
Query: 184 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 122 ----VGNKTDLADKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 164
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 112/122 (91%), Positives = 119/122 (97%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV
Sbjct: 58 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR+A ALPG+++
Sbjct: 118 IIMLVGNKTDLADKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRIAGALPGIEA 177
Query: 348 TE 349
+
Sbjct: 178 DQ 179
>gi|45361477|ref|NP_989315.1| RAB6A, member RAS oncogene family [Xenopus (Silurana) tropicalis]
gi|39794406|gb|AAH64230.1| RAB6A, member RAS oncogene family [Xenopus (Silurana) tropicalis]
Length = 208
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 157/230 (68%), Positives = 162/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVV+DITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVFDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 114/128 (89%), Positives = 122/128 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVV+DITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVFDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPED 355
+++K ED
Sbjct: 180 SQDKSRED 187
>gi|324525564|gb|ADY48564.1| Ras-related protein Rab-6.2 [Ascaris suum]
Length = 207
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 158/227 (69%), Positives = 162/227 (71%), Gaps = 64/227 (28%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
+ DFGNPL+KFKLVFLGEQSVGKTSL ITRFMYDSFDN
Sbjct: 2 ASDFGNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDN 38
Query: 64 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS
Sbjct: 39 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 98
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
FHQTSKWIDDVRTERGSDVIIML
Sbjct: 99 FHQTSKWIDDVRTERGSDVIIML------------------------------------- 121
Query: 184 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 122 ----VGNKTDLADKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 164
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 112/120 (93%), Positives = 117/120 (97%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV
Sbjct: 58 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR+A ALPG++
Sbjct: 118 IIMLVGNKTDLADKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRIAGALPGIEP 177
>gi|348538713|ref|XP_003456835.1| PREDICTED: ras-related protein Rab-6A-like [Oreochromis niloticus]
Length = 208
Score = 294 bits (753), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 156/230 (67%), Positives = 161/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MSS+GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSSAGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 113/128 (88%), Positives = 120/128 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD+
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDT 179
Query: 348 TENKPPED 355
T++K ED
Sbjct: 180 TQDKSRED 187
>gi|443689406|gb|ELT91802.1| hypothetical protein CAPTEDRAFT_169557 [Capitella teleta]
Length = 213
Score = 293 bits (751), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 156/230 (67%), Positives = 162/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS G+FGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSGGGEFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLED+T+RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDKTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
ANSF QTSKWIDDVRTERG+DVIIML
Sbjct: 98 ANSFQQTSKWIDDVRTERGTDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKRQVSTEEGERKAKEL VMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLSDKRQVSTEEGERKAKELGVMFIETSAKAGYNVKQL 166
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 113/122 (92%), Positives = 117/122 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K +RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITNANSF QTSKWIDDVRTERG+DV
Sbjct: 60 KTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNANSFQQTSKWIDDVRTERGTDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLSDKRQVSTEEGERKAKEL VMFIETSAKAGYNVKQLFRRVAAALPGM+
Sbjct: 120 IIMLVGNKTDLSDKRQVSTEEGERKAKELGVMFIETSAKAGYNVKQLFRRVAAALPGMEQ 179
Query: 348 TE 349
E
Sbjct: 180 KE 181
>gi|431838418|gb|ELK00350.1| Ras-related protein Rab-6A [Pteropus alecto]
Length = 171
Score = 293 bits (751), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 157/234 (67%), Positives = 162/234 (69%), Gaps = 64/234 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQV + L
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQVSVLL 170
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 96/107 (89%), Positives = 101/107 (94%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 334
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQV 166
>gi|351696990|gb|EHA99908.1| Ras-related protein Rab-6A [Heterocephalus glaber]
Length = 207
Score = 293 bits (751), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 157/241 (65%), Positives = 163/241 (67%), Gaps = 64/241 (26%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQ 240
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+ + G
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFCRAAALPGM 176
Query: 241 E 241
E
Sbjct: 177 E 177
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 110/128 (85%), Positives = 118/128 (92%), Gaps = 1/128 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLF R AAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFCR-AAALPGMES 178
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 179 TQDRSRED 186
>gi|410915364|ref|XP_003971157.1| PREDICTED: ras-related protein Rab-6A-like isoform 1 [Takifugu
rubripes]
Length = 208
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 155/230 (67%), Positives = 161/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS++GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSTAGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 113/128 (88%), Positives = 120/128 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD+
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDT 179
Query: 348 TENKPPED 355
T++K ED
Sbjct: 180 TQDKSRED 187
>gi|113206062|ref|NP_001038105.1| ras-related protein Rab-6A [Gallus gallus]
gi|118573265|sp|Q1KME6.3|RAB6A_CHICK RecName: Full=Ras-related protein Rab-6A
gi|93209536|gb|ABF00126.1| GTP-binding protein [Gallus gallus]
Length = 208
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 155/230 (67%), Positives = 160/230 (69%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 113/128 (88%), Positives = 120/128 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPED 355
T++K ED
Sbjct: 180 TQDKSRED 187
>gi|47222578|emb|CAG02943.1| unnamed protein product [Tetraodon nigroviridis]
Length = 208
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 155/230 (67%), Positives = 161/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS++GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSTAGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 113/128 (88%), Positives = 120/128 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD+
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDT 179
Query: 348 TENKPPED 355
T++K ED
Sbjct: 180 TQDKSRED 187
>gi|147903483|ref|NP_001080506.1| RAB6A, member RAS oncogene family [Xenopus laevis]
gi|28302338|gb|AAH46683.1| Rab6-prov protein [Xenopus laevis]
Length = 208
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 155/230 (67%), Positives = 160/230 (69%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 112/128 (87%), Positives = 120/128 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPED 355
+++K ED
Sbjct: 180 SQDKSRED 187
>gi|343098455|ref|NP_001230202.1| ras-related protein Rab-6A [Sus scrofa]
Length = 208
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 155/230 (67%), Positives = 160/230 (69%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 112/128 (87%), Positives = 120/128 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 180 TQDRSRED 187
>gi|351708549|gb|EHB11468.1| Ras-related protein Rab-6B, partial [Heterocephalus glaber]
Length = 174
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 156/234 (66%), Positives = 164/234 (70%), Gaps = 64/234 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 98 LNSFQQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
VGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQVR +L
Sbjct: 124 -------VGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQVRARL 170
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 98/115 (85%), Positives = 107/115 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
IIMLVGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQ+ R+A AL
Sbjct: 120 IIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQVRARLALAL 174
>gi|300797426|ref|NP_001180044.1| ras-related protein Rab-6A [Bos taurus]
gi|386782131|ref|NP_001248232.1| ras-related protein Rab-6A [Macaca mulatta]
gi|291384294|ref|XP_002708750.1| PREDICTED: RAB6A, member RAS oncogene family-like isoform 1
[Oryctolagus cuniculus]
gi|301759053|ref|XP_002915363.1| PREDICTED: ras-related protein Rab-6A-like isoform 1 [Ailuropoda
melanoleuca]
gi|332211363|ref|XP_003254789.1| PREDICTED: ras-related protein Rab-6A isoform 2 [Nomascus
leucogenys]
gi|426245109|ref|XP_004016356.1| PREDICTED: ras-related protein Rab-6A [Ovis aries]
gi|296479822|tpg|DAA21937.1| TPA: RAB6A, member RAS oncogene family-like isoform 1 [Bos taurus]
gi|380788415|gb|AFE66083.1| ras-related protein Rab-6A isoform a [Macaca mulatta]
Length = 208
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 155/230 (67%), Positives = 160/230 (69%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 112/128 (87%), Positives = 120/128 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 180 TQDRSRED 187
>gi|395814866|ref|XP_003780960.1| PREDICTED: ras-related protein Rab-6A isoform 1 [Otolemur
garnettii]
Length = 208
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 155/230 (67%), Positives = 160/230 (69%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 112/128 (87%), Positives = 120/128 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 180 TQDRSRED 187
>gi|19923231|ref|NP_002860.2| ras-related protein Rab-6A isoform a [Homo sapiens]
gi|397487242|ref|XP_003814714.1| PREDICTED: ras-related protein Rab-6A isoform 2 [Pan paniscus]
gi|4680635|gb|AAD27707.1|AF130122_1 small GTP binding protein RAB6 isoform [Homo sapiens]
gi|6684463|gb|AAF23593.1|AF119836_1 GTP-binding protein RAB6C [Homo sapiens]
gi|8163754|gb|AAF73841.1|AF198616_1 Rab GTPase RAB6A' [Homo sapiens]
gi|20379058|gb|AAM21089.1|AF498941_1 small GTP binding protein RAB6C [Homo sapiens]
gi|13177664|gb|AAH03617.1| RAB6A, member RAS oncogene family [Homo sapiens]
gi|16552748|dbj|BAB71371.1| unnamed protein product [Homo sapiens]
gi|46249771|gb|AAH68486.1| RAB6A protein [Homo sapiens]
gi|119595315|gb|EAW74909.1| RAB6A, member RAS oncogene family, isoform CRA_b [Homo sapiens]
gi|119595317|gb|EAW74911.1| RAB6A, member RAS oncogene family, isoform CRA_b [Homo sapiens]
Length = 208
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 155/230 (67%), Positives = 160/230 (69%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 112/128 (87%), Positives = 120/128 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 180 TQDRSRED 187
>gi|167013419|pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
gi|167013420|pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
gi|167013421|pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 157/230 (68%), Positives = 161/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 4 MSTGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 40
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG ERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 41 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITN 100
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 101 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 126
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 127 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 169
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/128 (89%), Positives = 121/128 (94%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAG ERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 63 RTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 123 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 182
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 183 TQDRSRED 190
>gi|268576735|ref|XP_002643347.1| C. briggsae CBR-RAB-6.2 protein [Caenorhabditis briggsae]
Length = 205
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 161/251 (64%), Positives = 168/251 (66%), Gaps = 73/251 (29%)
Query: 6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTY 65
DFGNPL+KFKLVFLGEQSVGKTSL ITRFMYDSFDNTY
Sbjct: 3 DFGNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDNTY 39
Query: 66 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 125
QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN+NSFH
Sbjct: 40 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNSNSFH 99
Query: 126 QTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVII 185
QTSKWIDDVRTERGSDVIIML
Sbjct: 100 QTSKWIDDVRTERGSDVIIML--------------------------------------- 120
Query: 186 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRS 245
VGNKTDLSDKRQV+T+EGERKAKELNVMFIETSAKAGYNVKQ+ R
Sbjct: 121 --VGNKTDLSDKRQVTTDEGERKAKELNVMFIETSAKAGYNVKQLF---------RRIAG 169
Query: 246 LIPSYIRDSTV 256
+P I+D V
Sbjct: 170 ALPGIIKDDPV 180
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 110/118 (93%), Positives = 116/118 (98%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN+NSFHQTSKWIDDVRTERGSDV
Sbjct: 57 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNSNSFHQTSKWIDDVRTERGSDV 116
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
IIMLVGNKTDLSDKRQV+T+EGERKAKELNVMFIETSAKAGYNVKQLFRR+A ALPG+
Sbjct: 117 IIMLVGNKTDLSDKRQVTTDEGERKAKELNVMFIETSAKAGYNVKQLFRRIAGALPGI 174
>gi|341903589|gb|EGT59524.1| CBN-RAB-6.2 protein [Caenorhabditis brenneri]
Length = 205
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 161/251 (64%), Positives = 168/251 (66%), Gaps = 73/251 (29%)
Query: 6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTY 65
DFGNPL+KFKLVFLGEQSVGKTSL ITRFMYDSFDNTY
Sbjct: 3 DFGNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDNTY 39
Query: 66 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 125
QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN+NSFH
Sbjct: 40 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNSNSFH 99
Query: 126 QTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVII 185
QTSKWIDDVRTERGSDVIIML
Sbjct: 100 QTSKWIDDVRTERGSDVIIML--------------------------------------- 120
Query: 186 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRS 245
VGNKTDLSDKRQV+T+EGERKAKELNVMFIETSAKAGYNVKQ+ R
Sbjct: 121 --VGNKTDLSDKRQVTTDEGERKAKELNVMFIETSAKAGYNVKQLF---------RRIAG 169
Query: 246 LIPSYIRDSTV 256
+P I+D V
Sbjct: 170 ALPGIIKDDPV 180
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 110/118 (93%), Positives = 116/118 (98%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN+NSFHQTSKWIDDVRTERGSDV
Sbjct: 57 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNSNSFHQTSKWIDDVRTERGSDV 116
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
IIMLVGNKTDLSDKRQV+T+EGERKAKELNVMFIETSAKAGYNVKQLFRR+A ALPG+
Sbjct: 117 IIMLVGNKTDLSDKRQVTTDEGERKAKELNVMFIETSAKAGYNVKQLFRRIAGALPGI 174
>gi|148227273|ref|NP_001090835.1| RAB6B, member RAS oncogene family [Xenopus (Silurana) tropicalis]
gi|110645498|gb|AAI18790.1| rab6b protein [Xenopus (Silurana) tropicalis]
Length = 208
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 155/230 (67%), Positives = 161/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSFHQTSKWIDDVRTERGSDVIIML
Sbjct: 98 LNSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQ++ E GE+KAKELNVMFIETSAK GYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQITIEAGEQKAKELNVMFIETSAKTGYNVKQL 166
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 109/124 (87%), Positives = 117/124 (94%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSFHQTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFHQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQ++ E GE+KAKELNVMFIETSAK GYNVKQLFRRVA+ALPGM+
Sbjct: 120 IIMLVGNKTDLADKRQITIEAGEQKAKELNVMFIETSAKTGYNVKQLFRRVASALPGMEC 179
Query: 348 TENK 351
+E K
Sbjct: 180 SEEK 183
>gi|54696262|gb|AAV38503.1| RAB6A, member RAS oncogene family [synthetic construct]
Length = 209
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 157/230 (68%), Positives = 161/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFL EQSVGKTSL ITRFMYDS
Sbjct: 1 MSTGGDFGNPLRKFKLVFLVEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 115/128 (89%), Positives = 121/128 (94%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPED 355
T ++ ED
Sbjct: 180 TRDRSRED 187
>gi|126327865|ref|XP_001363135.1| PREDICTED: ras-related protein Rab-6A-like isoform 1 [Monodelphis
domestica]
Length = 208
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 155/230 (67%), Positives = 160/230 (69%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 113/128 (88%), Positives = 120/128 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPED 355
T++K ED
Sbjct: 180 TQDKSRED 187
>gi|213972608|ref|NP_445818.1| ras-related protein Rab-6A [Rattus norvegicus]
gi|254750706|ref|NP_001157135.1| ras-related protein Rab-6A isoform 1 [Mus musculus]
gi|17512290|gb|AAH19118.1| Rab6 protein [Mus musculus]
gi|74150583|dbj|BAE32315.1| unnamed protein product [Mus musculus]
gi|148684517|gb|EDL16464.1| RAB6, member RAS oncogene family, isoform CRA_c [Mus musculus]
gi|149068776|gb|EDM18328.1| rCG39700, isoform CRA_d [Rattus norvegicus]
Length = 208
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 155/230 (67%), Positives = 160/230 (69%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 112/128 (87%), Positives = 120/128 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 180 TQDRSRED 187
>gi|308489025|ref|XP_003106706.1| CRE-RAB-6.2 protein [Caenorhabditis remanei]
gi|308253360|gb|EFO97312.1| CRE-RAB-6.2 protein [Caenorhabditis remanei]
Length = 205
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 161/251 (64%), Positives = 168/251 (66%), Gaps = 73/251 (29%)
Query: 6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTY 65
DFGNPL+KFKLVFLGEQSVGKTSL ITRFMYDSFDNTY
Sbjct: 3 DFGNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDNTY 39
Query: 66 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 125
QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN+NSFH
Sbjct: 40 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNSNSFH 99
Query: 126 QTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVII 185
QTSKWIDDVRTERGSDVIIML
Sbjct: 100 QTSKWIDDVRTERGSDVIIML--------------------------------------- 120
Query: 186 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRS 245
VGNKTDLSDKRQV+T+EGERKAKELNVMFIETSAKAGYNVKQ+ R
Sbjct: 121 --VGNKTDLSDKRQVTTDEGERKAKELNVMFIETSAKAGYNVKQLF---------RRIAG 169
Query: 246 LIPSYIRDSTV 256
+P I+D V
Sbjct: 170 ALPGIIKDDPV 180
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/129 (88%), Positives = 120/129 (93%), Gaps = 5/129 (3%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN+NSFHQTSKWIDDVRTERGSDV
Sbjct: 57 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNSNSFHQTSKWIDDVRTERGSDV 116
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM-- 345
IIMLVGNKTDLSDKRQV+T+EGERKAKELNVMFIETSAKAGYNVKQLFRR+A ALPG+
Sbjct: 117 IIMLVGNKTDLSDKRQVTTDEGERKAKELNVMFIETSAKAGYNVKQLFRRIAGALPGIIK 176
Query: 346 -DSTENKPP 353
D E PP
Sbjct: 177 DDPVE--PP 183
>gi|17570073|ref|NP_510790.1| Protein RAB-6.2 [Caenorhabditis elegans]
gi|74966331|sp|Q22782.1|RAB6B_CAEEL RecName: Full=Ras-related protein Rab-6.2
gi|351059242|emb|CCD74453.1| Protein RAB-6.2 [Caenorhabditis elegans]
Length = 205
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 161/251 (64%), Positives = 168/251 (66%), Gaps = 73/251 (29%)
Query: 6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTY 65
DFGNPL+KFKLVFLGEQSVGKTSL ITRFMYDSFDNTY
Sbjct: 3 DFGNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDNTY 39
Query: 66 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 125
QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN+NSFH
Sbjct: 40 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNSNSFH 99
Query: 126 QTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVII 185
QTSKWIDDVRTERGSDVIIML
Sbjct: 100 QTSKWIDDVRTERGSDVIIML--------------------------------------- 120
Query: 186 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRS 245
VGNKTDLSDKRQV+T+EGERKAKELNVMFIETSAKAGYNVKQ+ R
Sbjct: 121 --VGNKTDLSDKRQVTTDEGERKAKELNVMFIETSAKAGYNVKQLF---------RRIAG 169
Query: 246 LIPSYIRDSTV 256
+P I+D V
Sbjct: 170 ALPGIIKDDPV 180
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/129 (88%), Positives = 120/129 (93%), Gaps = 5/129 (3%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN+NSFHQTSKWIDDVRTERGSDV
Sbjct: 57 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNSNSFHQTSKWIDDVRTERGSDV 116
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM-- 345
IIMLVGNKTDLSDKRQV+T+EGERKAKELNVMFIETSAKAGYNVKQLFRR+A ALPG+
Sbjct: 117 IIMLVGNKTDLSDKRQVTTDEGERKAKELNVMFIETSAKAGYNVKQLFRRIAGALPGIIK 176
Query: 346 -DSTENKPP 353
D E PP
Sbjct: 177 DDPVE--PP 183
>gi|355714968|gb|AES05180.1| RAB6A, member RAS oncoprotein family [Mustela putorius furo]
Length = 164
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 157/228 (68%), Positives = 160/228 (70%), Gaps = 64/228 (28%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVK
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 98/105 (93%), Positives = 101/105 (96%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 332
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVK
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164
>gi|62898834|dbj|BAD97271.1| RAB6A, member RAS oncogene family isoform a variant [Homo sapiens]
Length = 208
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 154/230 (66%), Positives = 160/230 (69%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSD+IIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDIIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 111/128 (86%), Positives = 120/128 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSD+
Sbjct: 60 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDI 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 180 TQDRSRED 187
>gi|399163147|gb|AFP33149.1| rab-6.2, partial [Caenorhabditis elegans]
Length = 204
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 161/251 (64%), Positives = 168/251 (66%), Gaps = 73/251 (29%)
Query: 6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTY 65
DFGNPL+KFKLVFLGEQSVGKTSL ITRFMYDSFDNTY
Sbjct: 2 DFGNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDNTY 38
Query: 66 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 125
QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN+NSFH
Sbjct: 39 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNSNSFH 98
Query: 126 QTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVII 185
QTSKWIDDVRTERGSDVIIML
Sbjct: 99 QTSKWIDDVRTERGSDVIIML--------------------------------------- 119
Query: 186 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRS 245
VGNKTDLSDKRQV+T+EGERKAKELNVMFIETSAKAGYNVKQ+ R
Sbjct: 120 --VGNKTDLSDKRQVTTDEGERKAKELNVMFIETSAKAGYNVKQLF---------RRIAG 168
Query: 246 LIPSYIRDSTV 256
+P I+D V
Sbjct: 169 ALPGIIKDDPV 179
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 114/129 (88%), Positives = 120/129 (93%), Gaps = 5/129 (3%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN+NSFHQTSKWIDDVRTERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNSNSFHQTSKWIDDVRTERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM-- 345
IIMLVGNKTDLSDKRQV+T+EGERKAKELNVMFIETSAKAGYNVKQLFRR+A ALPG+
Sbjct: 116 IIMLVGNKTDLSDKRQVTTDEGERKAKELNVMFIETSAKAGYNVKQLFRRIAGALPGIIK 175
Query: 346 -DSTENKPP 353
D E PP
Sbjct: 176 DDPVE--PP 182
>gi|148233560|ref|NP_001086132.1| RAB6B, member RAS oncogene family [Xenopus laevis]
gi|49257610|gb|AAH74238.1| MGC83971 protein [Xenopus laevis]
Length = 208
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 154/230 (66%), Positives = 162/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSFHQTSKWIDDVRTERGSDVIIML
Sbjct: 98 LNSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQ++ EEGE+KAK+LNVM+IETSAK GYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQITIEEGEQKAKDLNVMYIETSAKTGYNVKQL 166
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 108/124 (87%), Positives = 118/124 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSFHQTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFHQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQ++ EEGE+KAK+LNVM+IETSAK GYNVKQLFRRVA+ALPGM+
Sbjct: 120 IIMLVGNKTDLADKRQITIEEGEQKAKDLNVMYIETSAKTGYNVKQLFRRVASALPGMEC 179
Query: 348 TENK 351
+E K
Sbjct: 180 SEEK 183
>gi|225714626|gb|ACO13159.1| Ras-related protein Rab-6A [Lepeophtheirus salmonis]
gi|290561885|gb|ADD38340.1| Ras-related protein Rab-6A [Lepeophtheirus salmonis]
Length = 213
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 156/228 (68%), Positives = 160/228 (70%), Gaps = 64/228 (28%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
M+ SG+F NPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MAVSGEFSNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYD TN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDTTN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
ANSFHQTSKWIDDVRTERGSDVIIML
Sbjct: 98 ANSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDLS+KRQV TE+GERKAKELNVMFIETSAKAGYNVK
Sbjct: 124 -------VGNKTDLSEKRQVPTEDGERKAKELNVMFIETSAKAGYNVK 164
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 113/121 (93%), Positives = 117/121 (96%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYD TNANSFHQTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDTTNANSFHQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLS+KRQV TE+GERKAKELNVMFIETSAKAGYNVK LFRRVAAALPGMDS
Sbjct: 120 IIMLVGNKTDLSEKRQVPTEDGERKAKELNVMFIETSAKAGYNVKLLFRRVAAALPGMDS 179
Query: 348 T 348
+
Sbjct: 180 S 180
>gi|444513620|gb|ELV10424.1| Ras-related protein Rab-6B [Tupaia chinensis]
Length = 357
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 153/229 (66%), Positives = 160/229 (69%), Gaps = 64/229 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 98 LNSFQQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 229
VGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQ
Sbjct: 124 -------VGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQ 165
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 105/124 (84%), Positives = 116/124 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQ FRRVA+ALPGM++
Sbjct: 120 IIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQXFRRVASALPGMEN 179
Query: 348 TENK 351
+ K
Sbjct: 180 VQEK 183
>gi|417397129|gb|JAA45598.1| Putative rab subfamily protein of small gtpase [Desmodus rotundus]
Length = 208
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 155/230 (67%), Positives = 160/230 (69%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERF SLIPSYIRDST AVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFSSLIPSYIRDSTAAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 112/128 (87%), Positives = 120/128 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERF SLIPSYIRDST AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTIRLQLWDTAGQERFSSLIPSYIRDSTAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 180 TQDRSRED 187
>gi|410972687|ref|XP_003992789.1| PREDICTED: ras-related protein Rab-6A isoform 1 [Felis catus]
Length = 208
Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 156/230 (67%), Positives = 160/230 (69%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLG Q VGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGVQDVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 115/128 (89%), Positives = 122/128 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 180 TQDRSRED 187
>gi|327267235|ref|XP_003218408.1| PREDICTED: ras-related protein Rab-6B-like [Anolis carolinensis]
Length = 208
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 154/230 (66%), Positives = 162/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS++GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSTAGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 98 LNSFQQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQ++ EEGE++AKELNVMFIETSAK GYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQITIEEGEQRAKELNVMFIETSAKTGYNVKQL 166
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 109/127 (85%), Positives = 118/127 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQ++ EEGE++AKELNVMFIETSAK GYNVKQLFRRVA+ALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQITIEEGEQRAKELNVMFIETSAKTGYNVKQLFRRVASALPGMES 179
Query: 348 TENKPPE 354
+ K E
Sbjct: 180 VQEKSKE 186
>gi|339236385|ref|XP_003379747.1| GTP-binding protein Ryh1 [Trichinella spiralis]
gi|316977574|gb|EFV60659.1| GTP-binding protein Ryh1 [Trichinella spiralis]
Length = 207
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 157/225 (69%), Positives = 160/225 (71%), Gaps = 64/225 (28%)
Query: 6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTY 65
DFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDSFDNTY
Sbjct: 4 DFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDNTY 40
Query: 66 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 125
QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH
Sbjct: 41 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 100
Query: 126 QTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVII 185
QTSKWIDDVRTERGSDVIIML
Sbjct: 101 QTSKWIDDVRTERGSDVIIML--------------------------------------- 121
Query: 186 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKRQVS+EEGERKAKELNVMFIETSAKAG +VKQ+
Sbjct: 122 --VGNKTDLSDKRQVSSEEGERKAKELNVMFIETSAKAGLHVKQL 164
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 117/128 (91%), Positives = 122/128 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV
Sbjct: 58 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLSDKRQVS+EEGERKAKELNVMFIETSAKAG +VKQLFRRVAAALPGMD
Sbjct: 118 IIMLVGNKTDLSDKRQVSSEEGERKAKELNVMFIETSAKAGLHVKQLFRRVAAALPGMDE 177
Query: 348 TENKPPED 355
T +P +D
Sbjct: 178 TPTRPTQD 185
>gi|198430343|ref|XP_002121682.1| PREDICTED: similar to GTP-binding protein [Ciona intestinalis]
Length = 209
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 156/227 (68%), Positives = 158/227 (69%), Gaps = 64/227 (28%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
+ DFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDSFDN
Sbjct: 2 TSDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDN 38
Query: 64 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NS
Sbjct: 39 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNS 98
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
F QTSKWIDDVRTERGSDVIIML
Sbjct: 99 FQQTSKWIDDVRTERGSDVIIML------------------------------------- 121
Query: 184 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKRQVS EEGERKAKELNVMFIETSAK GYNVKQ+
Sbjct: 122 ----VGNKTDLSDKRQVSIEEGERKAKELNVMFIETSAKTGYNVKQL 164
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 113/124 (91%), Positives = 118/124 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 58 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTSKWIDDVRTERGSDV 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLSDKRQVS EEGERKAKELNVMFIETSAK GYNVKQLFRRVAAALPGM++
Sbjct: 118 IIMLVGNKTDLSDKRQVSIEEGERKAKELNVMFIETSAKTGYNVKQLFRRVAAALPGMEN 177
Query: 348 TENK 351
+ +K
Sbjct: 178 SPDK 181
>gi|49456921|emb|CAG46781.1| RAB6A [Homo sapiens]
Length = 208
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 154/230 (66%), Positives = 160/230 (69%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGY+VKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYDVKQL 166
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 111/128 (86%), Positives = 120/128 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGY+VKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYDVKQLFRRVAAALPGMES 179
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 180 TQDRSRED 187
>gi|440895300|gb|ELR47529.1| Ras-related protein Rab-6B [Bos grunniens mutus]
Length = 207
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 154/231 (66%), Positives = 161/231 (69%), Gaps = 64/231 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 98 LNSFQQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVR 231
VGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQ R
Sbjct: 124 -------VGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQFR 167
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 106/127 (83%), Positives = 117/127 (92%), Gaps = 1/127 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQ FRRVA+ALPGM++
Sbjct: 120 IIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQ-FRRVASALPGMEN 178
Query: 348 TENKPPE 354
+ K E
Sbjct: 179 VQEKSKE 185
>gi|409107174|pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
gi|409107175|pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 154/230 (66%), Positives = 159/230 (69%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAG ERFRSLIPSYIRDS AVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 111/128 (86%), Positives = 119/128 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAG ERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 180 TQDRSRED 187
>gi|391348759|ref|XP_003748610.1| PREDICTED: ras-related protein Rab-6A-like [Metaseiulus
occidentalis]
Length = 207
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 154/228 (67%), Positives = 162/228 (71%), Gaps = 64/228 (28%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
++ DFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDSFD
Sbjct: 2 TNSDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFD 38
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN
Sbjct: 39 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 98
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SFHQTSKWIDDVRTERG+DVIIML
Sbjct: 99 SFHQTSKWIDDVRTERGTDVIIML------------------------------------ 122
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLS+KRQVSTE+GE+KAKEL VMFIETSAK+GYNVKQ+
Sbjct: 123 -----VGNKTDLSEKRQVSTEDGEKKAKELQVMFIETSAKSGYNVKQL 165
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 111/122 (90%), Positives = 119/122 (97%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG+DV
Sbjct: 59 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGTDV 118
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLS+KRQVSTE+GE+KAKEL VMFIETSAK+GYNVKQLFRRVA ALPGM++
Sbjct: 119 IIMLVGNKTDLSEKRQVSTEDGEKKAKELQVMFIETSAKSGYNVKQLFRRVANALPGMEN 178
Query: 348 TE 349
TE
Sbjct: 179 TE 180
>gi|47225306|emb|CAG09806.1| unnamed protein product [Tetraodon nigroviridis]
Length = 237
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 151/226 (66%), Positives = 159/226 (70%), Gaps = 64/226 (28%)
Query: 5 GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT 64
G+FGNPLRKFKLVFLGEQSVGKTSL ITRFMYDSFDNT
Sbjct: 2 GEFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDNT 38
Query: 65 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 124
YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST+AVVVYDITN NSF
Sbjct: 39 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTIAVVVYDITNLNSF 98
Query: 125 HQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVI 184
QTSKWIDDVRTERGSDVIIML
Sbjct: 99 QQTSKWIDDVRTERGSDVIIML-------------------------------------- 120
Query: 185 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQ++TEEGE++AKELNVMFIETSAK GYNVKQ+
Sbjct: 121 ---VGNKTDLADKRQITTEEGEQRAKELNVMFIETSAKTGYNVKQL 163
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 113/128 (88%), Positives = 120/128 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDST+AVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 57 RTVRLQLWDTAGQERFRSLIPSYIRDSTIAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 116
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQ++TEEGE++AKELNVMFIETSAK GYNVKQLFRRVAAALPGMDS
Sbjct: 117 IIMLVGNKTDLADKRQITTEEGEQRAKELNVMFIETSAKTGYNVKQLFRRVAAALPGMDS 176
Query: 348 TENKPPED 355
T K ED
Sbjct: 177 TPEKSKED 184
>gi|291399811|ref|XP_002716636.1| PREDICTED: RAB6B, member RAS oncogene family [Oryctolagus
cuniculus]
Length = 208
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 153/230 (66%), Positives = 161/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 98 LNSFQQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQL 166
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 108/127 (85%), Positives = 118/127 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQLFRRVA+ALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMES 179
Query: 348 TENKPPE 354
+ K E
Sbjct: 180 VQEKSKE 186
>gi|30424655|ref|NP_776142.1| ras-related protein Rab-6B [Mus musculus]
gi|96975097|ref|NP_057661.3| ras-related protein Rab-6B [Homo sapiens]
gi|155371985|ref|NP_001094599.1| ras-related protein Rab-6B [Bos taurus]
gi|386781658|ref|NP_001248165.1| ras-related protein Rab-6B [Macaca mulatta]
gi|126325809|ref|XP_001364646.1| PREDICTED: ras-related protein Rab-6B-like [Monodelphis domestica]
gi|296228059|ref|XP_002759647.1| PREDICTED: ras-related protein Rab-6B [Callithrix jacchus]
gi|297672009|ref|XP_002814108.1| PREDICTED: ras-related protein Rab-6B isoform 1 [Pongo abelii]
gi|301777392|ref|XP_002924114.1| PREDICTED: ras-related protein Rab-6B-like [Ailuropoda melanoleuca]
gi|311269411|ref|XP_003132476.1| PREDICTED: ras-related protein Rab-6B-like [Sus scrofa]
gi|348582027|ref|XP_003476778.1| PREDICTED: ras-related protein Rab-6B-like [Cavia porcellus]
gi|395519193|ref|XP_003763735.1| PREDICTED: ras-related protein Rab-6B isoform 1 [Sarcophilus
harrisii]
gi|395832821|ref|XP_003789452.1| PREDICTED: ras-related protein Rab-6B [Otolemur garnettii]
gi|397503903|ref|XP_003822554.1| PREDICTED: ras-related protein Rab-6B isoform 1 [Pan paniscus]
gi|402861531|ref|XP_003895143.1| PREDICTED: ras-related protein Rab-6B isoform 1 [Papio anubis]
gi|403265826|ref|XP_003925113.1| PREDICTED: ras-related protein Rab-6B isoform 1 [Saimiri
boliviensis boliviensis]
gi|426218278|ref|XP_004003376.1| PREDICTED: ras-related protein Rab-6B isoform 1 [Ovis aries]
gi|426342170|ref|XP_004036386.1| PREDICTED: ras-related protein Rab-6B isoform 1 [Gorilla gorilla
gorilla]
gi|13633595|sp|Q9NRW1.1|RAB6B_HUMAN RecName: Full=Ras-related protein Rab-6B
gi|47117095|sp|P61294.1|RAB6B_MOUSE RecName: Full=Ras-related protein Rab-6B
gi|229891504|sp|A6QR46.1|RAB6B_BOVIN RecName: Full=Ras-related protein Rab-6B
gi|7385001|gb|AAF61637.1|AF166492_1 small GTPase RAB6B [Homo sapiens]
gi|20379056|gb|AAM21088.1|AF498940_1 small GTP binding protein RAB6B [Homo sapiens]
gi|12803379|gb|AAH02510.1| RAB6B, member RAS oncogene family [Homo sapiens]
gi|26331000|dbj|BAC29230.1| unnamed protein product [Mus musculus]
gi|30583365|gb|AAP35927.1| RAB6B, member RAS oncogene family [Homo sapiens]
gi|38148674|gb|AAH60618.1| RAB6B, member RAS oncogene family [Mus musculus]
gi|60655043|gb|AAX32085.1| RAB6B [synthetic construct]
gi|112292963|dbj|BAF02859.1| Rab6B [Mus musculus]
gi|119599564|gb|EAW79158.1| RAB6B, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|119599565|gb|EAW79159.1| RAB6B, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|148689117|gb|EDL21064.1| RAB6B, member RAS oncogene family [Mus musculus]
gi|151557109|gb|AAI50112.1| RAB6B protein [Bos taurus]
gi|168279011|dbj|BAG11385.1| Ras-related protein Rab-6B [synthetic construct]
gi|189065457|dbj|BAG35296.1| unnamed protein product [Homo sapiens]
gi|190690565|gb|ACE87057.1| RAB6B, member RAS oncogene family protein [synthetic construct]
gi|296490967|tpg|DAA33065.1| TPA: ras-related protein Rab-6B [Bos taurus]
gi|380783157|gb|AFE63454.1| ras-related protein Rab-6B [Macaca mulatta]
gi|383408451|gb|AFH27439.1| ras-related protein Rab-6B [Macaca mulatta]
gi|384943778|gb|AFI35494.1| ras-related protein Rab-6B [Macaca mulatta]
gi|410206664|gb|JAA00551.1| RAB6B, member RAS oncogene family [Pan troglodytes]
gi|410261278|gb|JAA18605.1| RAB6B, member RAS oncogene family [Pan troglodytes]
gi|410287730|gb|JAA22465.1| RAB6B, member RAS oncogene family [Pan troglodytes]
gi|410328335|gb|JAA33114.1| RAB6B, member RAS oncogene family [Pan troglodytes]
gi|417397131|gb|JAA45599.1| Putative rab subfamily protein of small gtpase [Desmodus rotundus]
Length = 208
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 153/230 (66%), Positives = 161/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 98 LNSFQQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQL 166
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 107/127 (84%), Positives = 118/127 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQLFRRVA+ALPGM++
Sbjct: 120 IIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMEN 179
Query: 348 TENKPPE 354
+ K E
Sbjct: 180 VQEKSKE 186
>gi|344296650|ref|XP_003420019.1| PREDICTED: ras-related protein Rab-6B-like [Loxodonta africana]
Length = 192
Score = 287 bits (735), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 153/230 (66%), Positives = 161/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 98 LNSFQQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQL 166
Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 107/127 (84%), Positives = 118/127 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQLFRRVA+ALPGM++
Sbjct: 120 IIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMEN 179
Query: 348 TENKPPE 354
+ K E
Sbjct: 180 VQEKSKE 186
>gi|156349251|ref|XP_001621980.1| hypothetical protein NEMVEDRAFT_v1g176370 [Nematostella vectensis]
gi|156208357|gb|EDO29880.1| predicted protein [Nematostella vectensis]
Length = 209
Score = 287 bits (735), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 155/227 (68%), Positives = 159/227 (70%), Gaps = 64/227 (28%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
S DFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDSFDN
Sbjct: 2 SSDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDN 38
Query: 64 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN NS
Sbjct: 39 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNYNS 98
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
F QTSKWIDDVRTERG+DVIIML
Sbjct: 99 FQQTSKWIDDVRTERGNDVIIML------------------------------------- 121
Query: 184 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKRQV+ EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 122 ----VGNKTDLSDKRQVTAEEGERKAKELNVMFIETSAKAGYNVKQM 164
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 102/117 (87%), Positives = 109/117 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN NSF QTSKWIDDVRTERG+DV
Sbjct: 58 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNYNSFQQTSKWIDDVRTERGNDV 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
IIMLVGNKTDLSDKRQV+ EEGERKAKELNVMFIETSAKAGYNVKQ++R +A LP
Sbjct: 118 IIMLVGNKTDLSDKRQVTAEEGERKAKELNVMFIETSAKAGYNVKQMYRNLALELPA 174
>gi|432877569|ref|XP_004073164.1| PREDICTED: ras-related protein Rab-6B-like isoform 1 [Oryzias
latipes]
Length = 211
Score = 287 bits (735), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 151/229 (65%), Positives = 160/229 (69%), Gaps = 64/229 (27%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
+ G+FGNPLRKFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 5 TGGGEFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 41
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST+AVVVYDITN
Sbjct: 42 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTIAVVVYDITNL 101
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 102 NSFQQTSKWIDDVRTERGSDVIIML----------------------------------- 126
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQ++TEEGE++AKELNVMFIETSAK GYNVKQ+
Sbjct: 127 ------VGNKTDLADKRQITTEEGEQRAKELNVMFIETSAKTGYNVKQL 169
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 112/128 (87%), Positives = 119/128 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDST+AVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 63 RTVRLQLWDTAGQERFRSLIPSYIRDSTIAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQ++TEEGE++AKELNVMFIETSAK GYNVKQLFRRVAAALPGMDS
Sbjct: 123 IIMLVGNKTDLADKRQITTEEGEQRAKELNVMFIETSAKTGYNVKQLFRRVAAALPGMDS 182
Query: 348 TENKPPED 355
K ED
Sbjct: 183 APEKSKED 190
>gi|50927456|gb|AAH78662.1| RAB6B protein [Homo sapiens]
Length = 208
Score = 286 bits (733), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 152/230 (66%), Positives = 160/230 (69%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QTSKWIDDVRTERGSDVIIM
Sbjct: 98 LNSFQQTSKWIDDVRTERGSDVIIM----------------------------------- 122
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
L GNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQ+
Sbjct: 123 ------LAGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQL 166
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 106/127 (83%), Positives = 117/127 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIML GNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQLFRRVA+ALPGM++
Sbjct: 120 IIMLAGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMEN 179
Query: 348 TENKPPE 354
+ K E
Sbjct: 180 VQEKSKE 186
>gi|432853316|ref|XP_004067647.1| PREDICTED: ras-related protein Rab-6B-like isoform 1 [Oryzias
latipes]
Length = 208
Score = 286 bits (733), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 152/230 (66%), Positives = 160/230 (69%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS S DFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSVSSDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTAKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQL 166
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 107/127 (84%), Positives = 117/127 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTAKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPE 354
+ E
Sbjct: 180 VQEPSKE 186
>gi|410915366|ref|XP_003971158.1| PREDICTED: ras-related protein Rab-6A-like isoform 2 [Takifugu
rubripes]
Length = 208
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 149/230 (64%), Positives = 162/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS++GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSTAGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQ++TEEGE++AKE++V+FIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQITTEEGEQRAKEMSVLFIETSAKAGYNVKQL 166
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 107/128 (83%), Positives = 121/128 (94%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQ++TEEGE++AKE++V+FIETSAKAGYNVKQLFRRVAAALPGMD+
Sbjct: 120 IIMLVGNKTDLADKRQITTEEGEQRAKEMSVLFIETSAKAGYNVKQLFRRVAAALPGMDT 179
Query: 348 TENKPPED 355
T++K ED
Sbjct: 180 TQDKSRED 187
>gi|432898518|ref|XP_004076541.1| PREDICTED: ras-related protein Rab-6A-like isoform 1 [Oryzias
latipes]
Length = 208
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 149/230 (64%), Positives = 160/230 (69%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS +GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSGAGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQ++TEEGE++AKE+NV+FIETSAK GYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQITTEEGEQRAKEMNVLFIETSAKTGYNVKQL 166
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 106/128 (82%), Positives = 120/128 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQ++TEEGE++AKE+NV+FIETSAK GYNVKQLFRRVAAALPGMD+
Sbjct: 120 IIMLVGNKTDLADKRQITTEEGEQRAKEMNVLFIETSAKTGYNVKQLFRRVAAALPGMDT 179
Query: 348 TENKPPED 355
+++K ED
Sbjct: 180 SQDKSRED 187
>gi|156717362|ref|NP_001096221.1| uncharacterized protein LOC100124772 [Xenopus (Silurana)
tropicalis]
gi|111309029|gb|AAI21384.1| LOC100124772 protein [Xenopus (Silurana) tropicalis]
Length = 210
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 153/232 (65%), Positives = 163/232 (70%), Gaps = 66/232 (28%)
Query: 1 MSSSG--DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMY 58
MSS+G +FGNPLRKFKLVFLGEQSVGKTSL ITRFMY
Sbjct: 1 MSSAGGGEFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMY 37
Query: 59 DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 118
DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST+AVVVYDI
Sbjct: 38 DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTIAVVVYDI 97
Query: 119 TNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTE 178
TN NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 98 TNLNSFQQTSKWIDDVRTERGSDVIIML-------------------------------- 125
Query: 179 RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQ++TEEGE++AKEL+VMFIETSAK GYNVKQ+
Sbjct: 126 ---------VGNKTDLADKRQITTEEGEQRAKELSVMFIETSAKTGYNVKQL 168
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 112/128 (87%), Positives = 120/128 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDST+AVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 62 RTVRLQLWDTAGQERFRSLIPSYIRDSTIAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 121
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQ++TEEGE++AKEL+VMFIETSAK GYNVKQLFRRVAAALPGMDS
Sbjct: 122 IIMLVGNKTDLADKRQITTEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVAAALPGMDS 181
Query: 348 TENKPPED 355
T K ED
Sbjct: 182 TPEKSKED 189
>gi|348515487|ref|XP_003445271.1| PREDICTED: ras-related protein Rab-6A-like isoform 2 [Oreochromis
niloticus]
gi|410913473|ref|XP_003970213.1| PREDICTED: ras-related protein Rab-6A-like isoform 1 [Takifugu
rubripes]
Length = 211
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 151/229 (65%), Positives = 158/229 (68%), Gaps = 64/229 (27%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
+ G+FGNPLRKFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 5 TGGGEFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 41
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST+AVVVYDITN
Sbjct: 42 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTIAVVVYDITNL 101
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 102 NSFQQTSKWIDDVRTERGSDVIIML----------------------------------- 126
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS E ERKA+ELNVM+IETSAKAGYNVKQ+
Sbjct: 127 ------VGNKTDLADKRQVSVEAAERKARELNVMYIETSAKAGYNVKQL 169
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 113/128 (88%), Positives = 118/128 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDST+AVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 63 RTVRLQLWDTAGQERFRSLIPSYIRDSTIAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS E ERKA+ELNVM+IETSAKAGYNVKQLFRRVAAALPGMDS
Sbjct: 123 IIMLVGNKTDLADKRQVSVEAAERKARELNVMYIETSAKAGYNVKQLFRRVAAALPGMDS 182
Query: 348 TENKPPED 355
T K ED
Sbjct: 183 TPEKSKED 190
>gi|432877571|ref|XP_004073165.1| PREDICTED: ras-related protein Rab-6B-like isoform 2 [Oryzias
latipes]
Length = 211
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 151/229 (65%), Positives = 158/229 (68%), Gaps = 64/229 (27%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
+ G+FGNPLRKFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 5 TGGGEFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 41
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST+AVVVYDITN
Sbjct: 42 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTIAVVVYDITNL 101
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 102 NSFQQTSKWIDDVRTERGSDVIIML----------------------------------- 126
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS E ERKA+ELNVM+IETSAKAGYNVKQ+
Sbjct: 127 ------VGNKTDLADKRQVSVEAAERKARELNVMYIETSAKAGYNVKQL 169
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 112/128 (87%), Positives = 117/128 (91%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDST+AVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 63 RTVRLQLWDTAGQERFRSLIPSYIRDSTIAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS E ERKA+ELNVM+IETSAKAGYNVKQLFRRVAAALPGMDS
Sbjct: 123 IIMLVGNKTDLADKRQVSVEAAERKARELNVMYIETSAKAGYNVKQLFRRVAAALPGMDS 182
Query: 348 TENKPPED 355
K ED
Sbjct: 183 APEKSKED 190
>gi|348513460|ref|XP_003444260.1| PREDICTED: ras-related protein Rab-6B-like [Oreochromis niloticus]
Length = 208
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 152/230 (66%), Positives = 159/230 (69%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS DFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSVGSDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQL 166
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 108/127 (85%), Positives = 117/127 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPE 354
+ E
Sbjct: 180 MQETSKE 186
>gi|387018010|gb|AFJ51123.1| ras-related protein Rab-6A-like [Crotalus adamanteus]
Length = 212
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 150/228 (65%), Positives = 160/228 (70%), Gaps = 64/228 (28%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
+ G+FGNPLRKFKLVFLGEQSVGKTSL ITRFMYDSFD
Sbjct: 7 TGGEFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFD 43
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST+AVVVYDITN N
Sbjct: 44 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTIAVVVYDITNLN 103
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF QTSKWIDDVRTERGSDVIIML
Sbjct: 104 SFQQTSKWIDDVRTERGSDVIIML------------------------------------ 127
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQ++TEEGE++AKEL+VMFIETSAK GYNVKQ+
Sbjct: 128 -----VGNKTDLADKRQITTEEGEQRAKELSVMFIETSAKTGYNVKQL 170
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 109/128 (85%), Positives = 119/128 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDST+AVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 64 RTVRLQLWDTAGQERFRSLIPSYIRDSTIAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 123
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQ++TEEGE++AKEL+VMFIETSAK GYNVKQLFRRVAAALPGMD+
Sbjct: 124 IIMLVGNKTDLADKRQITTEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVAAALPGMDN 183
Query: 348 TENKPPED 355
K +D
Sbjct: 184 APEKSKDD 191
>gi|47228262|emb|CAG07657.1| unnamed protein product [Tetraodon nigroviridis]
Length = 208
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 151/230 (65%), Positives = 158/230 (68%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GD GNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDLGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL +KRQ++ EEGE++AKELNVMFIETSAK G NVKQ+
Sbjct: 124 -------VGNKTDLEEKRQITIEEGEQRAKELNVMFIETSAKTGCNVKQL 166
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 107/127 (84%), Positives = 116/127 (91%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL +KRQ++ EEGE++AKELNVMFIETSAK G NVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLEEKRQITIEEGEQRAKELNVMFIETSAKTGCNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPE 354
++ E
Sbjct: 180 LDDANSE 186
>gi|410924265|ref|XP_003975602.1| PREDICTED: ras-related protein Rab-6B-like isoform 1 [Takifugu
rubripes]
gi|225706442|gb|ACO09067.1| Ras-related protein Rab-6B [Osmerus mordax]
Length = 208
Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 151/230 (65%), Positives = 158/230 (68%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GD GNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDLGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL +KRQ++ EEGE++AKELNVMFIETSAK G NVKQ+
Sbjct: 124 -------VGNKTDLEEKRQITIEEGEQRAKELNVMFIETSAKTGCNVKQL 166
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 108/127 (85%), Positives = 117/127 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL +KRQ++ EEGE++AKELNVMFIETSAK G NVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLEEKRQITIEEGEQRAKELNVMFIETSAKTGCNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPE 354
++ PE
Sbjct: 180 LDDANPE 186
>gi|348501270|ref|XP_003438193.1| PREDICTED: ras-related protein Rab-6B-like isoform 1 [Oreochromis
niloticus]
Length = 208
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 150/230 (65%), Positives = 157/230 (68%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GD GNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDLGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTCKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL +KRQ++ EEGE++AKELNVMFIETSAK G NVKQ+
Sbjct: 124 -------VGNKTDLEEKRQITIEEGEQRAKELNVMFIETSAKTGCNVKQL 166
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 107/127 (84%), Positives = 116/127 (91%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT KWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTCKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL +KRQ++ EEGE++AKELNVMFIETSAK G NVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLEEKRQITIEEGEQRAKELNVMFIETSAKTGCNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPE 354
++ PE
Sbjct: 180 LDDANPE 186
>gi|348515489|ref|XP_003445272.1| PREDICTED: ras-related protein Rab-6A-like isoform 3 [Oreochromis
niloticus]
Length = 179
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 151/228 (66%), Positives = 157/228 (68%), Gaps = 64/228 (28%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
+ G+FGNPLRKFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 5 TGGGEFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 41
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST+AVVVYDITN
Sbjct: 42 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTIAVVVYDITNL 101
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 102 NSFQQTSKWIDDVRTERGSDVIIML----------------------------------- 126
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 229
VGNKTDL+DKRQVS E ERKA+ELNVM+IETSAKAGYNVKQ
Sbjct: 127 ------VGNKTDLADKRQVSVEAAERKARELNVMYIETSAKAGYNVKQ 168
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 95/106 (89%), Positives = 100/106 (94%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDST+AVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 63 RTVRLQLWDTAGQERFRSLIPSYIRDSTIAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333
IIMLVGNKTDL+DKRQVS E ERKA+ELNVM+IETSAKAGYNVKQ
Sbjct: 123 IIMLVGNKTDLADKRQVSVEAAERKARELNVMYIETSAKAGYNVKQ 168
>gi|432916105|ref|XP_004079294.1| PREDICTED: ras-related protein Rab-6B-like isoform 1 [Oryzias
latipes]
Length = 208
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 150/230 (65%), Positives = 157/230 (68%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GD GNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDLGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTCKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL +KRQ++ EEGE++AKELNVMFIETSAK G NVKQ+
Sbjct: 124 -------VGNKTDLEEKRQITIEEGEQRAKELNVMFIETSAKTGSNVKQL 166
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 107/127 (84%), Positives = 116/127 (91%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT KWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTCKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL +KRQ++ EEGE++AKELNVMFIETSAK G NVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLEEKRQITIEEGEQRAKELNVMFIETSAKTGSNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPE 354
++ PE
Sbjct: 180 LDDANPE 186
>gi|313239407|emb|CBY14345.1| unnamed protein product [Oikopleura dioica]
Length = 210
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 150/228 (65%), Positives = 160/228 (70%), Gaps = 64/228 (28%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
++ DFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDSFD
Sbjct: 2 AATDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFD 38
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYD+TN N
Sbjct: 39 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDVTNIN 98
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF+QT+KWIDDVRTERG+DVII+L
Sbjct: 99 SFNQTNKWIDDVRTERGTDVIIVL------------------------------------ 122
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS +EGERKAKELNVMFIETSAK GYNVKQ+
Sbjct: 123 -----VGNKTDLADKRQVSIDEGERKAKELNVMFIETSAKTGYNVKQL 165
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 107/122 (87%), Positives = 116/122 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYD+TN NSF+QT+KWIDDVRTERG+DV
Sbjct: 59 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDVTNINSFNQTNKWIDDVRTERGTDV 118
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKRQVS +EGERKAKELNVMFIETSAK GYNVKQLFRRVAAALPGM+
Sbjct: 119 IIVLVGNKTDLADKRQVSIDEGERKAKELNVMFIETSAKTGYNVKQLFRRVAAALPGMEP 178
Query: 348 TE 349
E
Sbjct: 179 KE 180
>gi|209735274|gb|ACI68506.1| Ras-related protein Rab-6B [Salmo salar]
Length = 208
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 151/230 (65%), Positives = 157/230 (68%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS DFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSVGSDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QTSKWIDDVRT RGSDVIIML
Sbjct: 98 VNSFQQTSKWIDDVRTGRGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQ+
Sbjct: 124 -------VGNKTDLGDKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQL 166
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 107/127 (84%), Positives = 115/127 (90%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRT RGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTSKWIDDVRTGRGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLGDKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPE 354
+ E
Sbjct: 180 MQETSKE 186
>gi|213424141|pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 152/223 (68%), Positives = 155/223 (69%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GNPLRKFKLVFLGEQSVGKTSL ITRFMYDSFDNTYQA
Sbjct: 1 GNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDNTYQA 37
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIGIDFLSKTMYLEDRTVRLQLWDTAG ERFRSLIPSYIRDSTVAVVVYDITN NSF QT
Sbjct: 38 TIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQT 97
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
+KWIDDVRTERGSDVIIML
Sbjct: 98 TKWIDDVRTERGSDVIIML----------------------------------------- 116
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 117 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 159
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 114/128 (89%), Positives = 121/128 (94%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAG ERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 53 RTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 113 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 172
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 173 TQDRSRED 180
>gi|348515485|ref|XP_003445270.1| PREDICTED: ras-related protein Rab-6A-like isoform 1 [Oreochromis
niloticus]
gi|410913475|ref|XP_003970214.1| PREDICTED: ras-related protein Rab-6A-like isoform 2 [Takifugu
rubripes]
Length = 211
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 148/229 (64%), Positives = 155/229 (67%), Gaps = 64/229 (27%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
+ G+FGNPLRKFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 5 TGGGEFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 41
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS AVVVYDI N
Sbjct: 42 DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDIANL 101
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 102 NSFQQTSKWIDDVRTERGSDVIIML----------------------------------- 126
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS E ERKA+ELNVM+IETSAKAGYNVKQ+
Sbjct: 127 ------VGNKTDLADKRQVSVEAAERKARELNVMYIETSAKAGYNVKQL 169
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 110/128 (85%), Positives = 115/128 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDI N NSF QTSKWIDDVRTERGSDV
Sbjct: 63 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDIANLNSFQQTSKWIDDVRTERGSDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS E ERKA+ELNVM+IETSAKAGYNVKQLFRRVAAALPGMDS
Sbjct: 123 IIMLVGNKTDLADKRQVSVEAAERKARELNVMYIETSAKAGYNVKQLFRRVAAALPGMDS 182
Query: 348 TENKPPED 355
T K ED
Sbjct: 183 TPEKSKED 190
>gi|432877573|ref|XP_004073166.1| PREDICTED: ras-related protein Rab-6B-like isoform 3 [Oryzias
latipes]
Length = 211
Score = 280 bits (717), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 148/229 (64%), Positives = 155/229 (67%), Gaps = 64/229 (27%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
+ G+FGNPLRKFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 5 TGGGEFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 41
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS AVVVYDI N
Sbjct: 42 DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDIANL 101
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 102 NSFQQTSKWIDDVRTERGSDVIIML----------------------------------- 126
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS E ERKA+ELNVM+IETSAKAGYNVKQ+
Sbjct: 127 ------VGNKTDLADKRQVSVEAAERKARELNVMYIETSAKAGYNVKQL 169
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 109/128 (85%), Positives = 114/128 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDI N NSF QTSKWIDDVRTERGSDV
Sbjct: 63 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDIANLNSFQQTSKWIDDVRTERGSDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS E ERKA+ELNVM+IETSAKAGYNVKQLFRRVAAALPGMDS
Sbjct: 123 IIMLVGNKTDLADKRQVSVEAAERKARELNVMYIETSAKAGYNVKQLFRRVAAALPGMDS 182
Query: 348 TENKPPED 355
K ED
Sbjct: 183 APEKSKED 190
>gi|158254057|gb|AAI54222.1| Zgc:63637 [Danio rerio]
Length = 211
Score = 280 bits (717), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 149/229 (65%), Positives = 156/229 (68%), Gaps = 64/229 (27%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
+ G+FGNPLRKFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 5 TGGGEFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 41
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST+AVVVYDITN
Sbjct: 42 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTIAVVVYDITNL 101
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 102 NSFQQTSKWIDDVRTERGSDVIIML----------------------------------- 126
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL DKRQVS E E+KA+EL VM+IETSAKAGYNVKQ+
Sbjct: 127 ------VGNKTDLGDKRQVSVEAAEKKARELGVMYIETSAKAGYNVKQL 169
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 111/128 (86%), Positives = 116/128 (90%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDST+AVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 63 RTVRLQLWDTAGQERFRSLIPSYIRDSTIAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL DKRQVS E E+KA+EL VM+IETSAKAGYNVKQLFRRVAAALPGMDS
Sbjct: 123 IIMLVGNKTDLGDKRQVSVEAAEKKARELGVMYIETSAKAGYNVKQLFRRVAAALPGMDS 182
Query: 348 TENKPPED 355
T K ED
Sbjct: 183 TPEKSKED 190
>gi|340370332|ref|XP_003383700.1| PREDICTED: ras-related protein Rab-6A-like [Amphimedon
queenslandica]
Length = 210
Score = 280 bits (717), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 150/230 (65%), Positives = 158/230 (68%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+S DF NPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSASADFSNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
+NSF Q +KWI+DVR ERG+DVIIML
Sbjct: 98 SNSFQQVNKWIEDVRAERGTDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL DKRQVS +EGERKA+EL VMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLQDKRQVSMDEGERKAQELGVMFIETSAKAGYNVKQL 166
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 106/128 (82%), Positives = 117/128 (91%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN+NSF Q +KWI+DVR ERG+DV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNSNSFQQVNKWIEDVRAERGTDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL DKRQVS +EGERKA+EL VMFIETSAKAGYNVKQLFRRVAAALPGM++
Sbjct: 120 IIMLVGNKTDLQDKRQVSMDEGERKAQELGVMFIETSAKAGYNVKQLFRRVAAALPGMEN 179
Query: 348 TENKPPED 355
+ K +D
Sbjct: 180 NQEKQNKD 187
>gi|229367060|gb|ACQ58510.1| Ras-related protein Rab-6B [Anoplopoma fimbria]
Length = 208
Score = 280 bits (716), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 149/230 (64%), Positives = 158/230 (68%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS DFGNPLRKFKLVFLGEQSVGKTSL ITRF+YDS
Sbjct: 1 MSVGSDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFVYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QTSKWI+DVRTERGSDVIIML
Sbjct: 98 VNSFQQTSKWIEDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQ++ EEGE++AKEL+VMFIET AK GYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQITIEEGEQRAKELSVMFIETGAKTGYNVKQL 166
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 106/127 (83%), Positives = 116/127 (91%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWI+DVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTSKWIEDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQ++ EEGE++AKEL+VMFIET AK GYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETGAKTGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPE 354
+ E
Sbjct: 180 MQETSKE 186
>gi|432853318|ref|XP_004067648.1| PREDICTED: ras-related protein Rab-6B-like isoform 2 [Oryzias
latipes]
Length = 215
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 152/237 (64%), Positives = 160/237 (67%), Gaps = 71/237 (29%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS S DFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSVSSDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRT-------VRLQLWDTAGQERFRSLIPSYIRDSTVAV 113
FDNTYQATIGIDFLSKTMYLEDRT VRLQLWDTAGQERFRSLIPSYIRDSTVAV
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTLSLSEPQVRLQLWDTAGQERFRSLIPSYIRDSTVAV 97
Query: 114 VVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID 173
VVYDITN NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VVYDITNVNSFQQTAKWIDDVRTERGSDVIIML--------------------------- 130
Query: 174 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQ+
Sbjct: 131 --------------VGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQL 173
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 108/126 (85%), Positives = 117/126 (92%)
Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI 288
QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDVI
Sbjct: 68 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTAKWIDDVRTERGSDVI 127
Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDST 348
IMLVGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQLFRRVAAALPGM+S
Sbjct: 128 IMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVAAALPGMESV 187
Query: 349 ENKPPE 354
+ E
Sbjct: 188 QEPSKE 193
>gi|432898520|ref|XP_004076542.1| PREDICTED: ras-related protein Rab-6A-like isoform 2 [Oryzias
latipes]
Length = 215
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 149/237 (62%), Positives = 160/237 (67%), Gaps = 71/237 (29%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS +GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSGAGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRT-------VRLQLWDTAGQERFRSLIPSYIRDSTVAV 113
FDNTYQATIGIDFLSKTMYLEDRT +RLQLWDTAGQERFRSLIPSYIRDS AV
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTLTLSDGQIRLQLWDTAGQERFRSLIPSYIRDSAAAV 97
Query: 114 VVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID 173
VVYDITN NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VVYDITNVNSFQQTTKWIDDVRTERGSDVIIML--------------------------- 130
Query: 174 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQ++TEEGE++AKE+NV+FIETSAK GYNVKQ+
Sbjct: 131 --------------VGNKTDLADKRQITTEEGEQRAKEMNVLFIETSAKTGYNVKQL 173
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 107/127 (84%), Positives = 120/127 (94%)
Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI 288
Q+RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDVI
Sbjct: 68 QIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 127
Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDST 348
IMLVGNKTDL+DKRQ++TEEGE++AKE+NV+FIETSAK GYNVKQLFRRVAAALPGMD++
Sbjct: 128 IMLVGNKTDLADKRQITTEEGEQRAKEMNVLFIETSAKTGYNVKQLFRRVAAALPGMDTS 187
Query: 349 ENKPPED 355
++K ED
Sbjct: 188 QDKSRED 194
>gi|432853320|ref|XP_004067649.1| PREDICTED: ras-related protein Rab-6B-like isoform 3 [Oryzias
latipes]
Length = 215
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 152/237 (64%), Positives = 160/237 (67%), Gaps = 71/237 (29%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS S DFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSVSSDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVR-------LQLWDTAGQERFRSLIPSYIRDSTVAV 113
FDNTYQATIGIDFLSKTMYLEDRTVR LQLWDTAGQERFRSLIPSYIRDSTVAV
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRIRSTAVRLQLWDTAGQERFRSLIPSYIRDSTVAV 97
Query: 114 VVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID 173
VVYDITN NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VVYDITNVNSFQQTAKWIDDVRTERGSDVIIML--------------------------- 130
Query: 174 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQ+
Sbjct: 131 --------------VGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQL 173
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 107/125 (85%), Positives = 116/125 (92%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDVII
Sbjct: 69 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTAKWIDDVRTERGSDVII 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
MLVGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQLFRRVAAALPGM+S +
Sbjct: 129 MLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVAAALPGMESVQ 188
Query: 350 NKPPE 354
E
Sbjct: 189 EPSKE 193
>gi|290462723|gb|ADD24409.1| Ras-related protein Rab-6A [Lepeophtheirus salmonis]
Length = 160
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 151/224 (67%), Positives = 155/224 (69%), Gaps = 64/224 (28%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
M+ SG+F NPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MAVSGEFSNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYD TN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDTTN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
ANSFHQTSKWIDDVRTERGSD IIML
Sbjct: 98 ANSFHQTSKWIDDVRTERGSDAIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
VGNKTDLS+KRQV TE+GERKAKELNVMFIETSAKAG
Sbjct: 124 -------VGNKTDLSEKRQVPTEDGERKAKELNVMFIETSAKAG 160
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 94/101 (93%), Positives = 97/101 (96%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYD TNANSFHQTSKWIDDVRTERGSD
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDTTNANSFHQTSKWIDDVRTERGSDA 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 328
IIMLVGNKTDLS+KRQV TE+GERKAKELNVMFIETSAKAG
Sbjct: 120 IIMLVGNKTDLSEKRQVPTEDGERKAKELNVMFIETSAKAG 160
>gi|51480434|gb|AAH80215.1| Rab6b protein [Danio rerio]
Length = 207
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 149/225 (66%), Positives = 156/225 (69%), Gaps = 64/225 (28%)
Query: 6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTY 65
DFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDSFDNTY
Sbjct: 5 DFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDNTY 41
Query: 66 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 125
QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF
Sbjct: 42 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQ 101
Query: 126 QTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVII 185
QTSKWIDDVRTERGSDVIIML
Sbjct: 102 QTSKWIDDVRTERGSDVIIML--------------------------------------- 122
Query: 186 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK G NVKQ+
Sbjct: 123 --VGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGCNVKQL 165
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 107/127 (84%), Positives = 116/127 (91%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 59 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTSKWIDDVRTERGSDV 118
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK G NVKQLFRRVAAALPGM+S
Sbjct: 119 IIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGCNVKQLFRRVAAALPGMES 178
Query: 348 TENKPPE 354
+ E
Sbjct: 179 MQETSKE 185
>gi|229367302|gb|ACQ58631.1| Ras-related protein Rab-6B [Anoplopoma fimbria]
Length = 208
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 149/230 (64%), Positives = 158/230 (68%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS DFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSVGSDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMY EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYSEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
+SF QTSKWI+DVRTERGSDVIIML
Sbjct: 98 VSSFQQTSKWIEDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQL 166
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 106/127 (83%), Positives = 117/127 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN +SF QTSKWI+DVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVSSFQQTSKWIEDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPE 354
+ E
Sbjct: 180 MQETSKE 186
>gi|47087033|ref|NP_998530.1| ras-related protein Rab-6A [Danio rerio]
gi|34784020|gb|AAH58059.1| Zgc:63637 [Danio rerio]
Length = 211
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 148/229 (64%), Positives = 156/229 (68%), Gaps = 64/229 (27%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
+ G+FG+PLRKFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 5 TGGGEFGDPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 41
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST+AVVVYDITN
Sbjct: 42 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTIAVVVYDITNL 101
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 102 NSFQQTSKWIDDVRTERGSDVIIML----------------------------------- 126
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL DKRQVS E E+KA+EL VM+IETSAKAGYNVKQ+
Sbjct: 127 ------VGNKTDLGDKRQVSVEAAEKKARELGVMYIETSAKAGYNVKQL 169
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 111/128 (86%), Positives = 116/128 (90%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDST+AVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 63 RTVRLQLWDTAGQERFRSLIPSYIRDSTIAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL DKRQVS E E+KA+EL VM+IETSAKAGYNVKQLFRRVAAALPGMDS
Sbjct: 123 IIMLVGNKTDLGDKRQVSVEAAEKKARELGVMYIETSAKAGYNVKQLFRRVAAALPGMDS 182
Query: 348 TENKPPED 355
T K ED
Sbjct: 183 TPEKSKED 190
>gi|410915368|ref|XP_003971159.1| PREDICTED: ras-related protein Rab-6A-like isoform 3 [Takifugu
rubripes]
Length = 220
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 150/242 (61%), Positives = 162/242 (66%), Gaps = 76/242 (31%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS++GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSTAGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTV------------RLQLWDTAGQERFRSLIPSYIRD 108
FDNTYQATIGIDFLSKTMYLEDRTV RLQLWDTAGQERFRSLIPSYIRD
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVGAFVSAATSLGIRLQLWDTAGQERFRSLIPSYIRD 97
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
S AVVVYDITN NS F QT
Sbjct: 98 SAAAVVVYDITNVNS-----------------------------------------FQQT 116
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
+KWIDDVRTERGSDVIIMLVGNKTDL+DKRQ++TEEGE++AKE++V+FIETSAKAGYNVK
Sbjct: 117 TKWIDDVRTERGSDVIIMLVGNKTDLADKRQITTEEGEQRAKEMSVLFIETSAKAGYNVK 176
Query: 229 QV 230
Q+
Sbjct: 177 QL 178
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 107/126 (84%), Positives = 120/126 (95%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
+RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDVII
Sbjct: 74 IRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVII 133
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
MLVGNKTDL+DKRQ++TEEGE++AKE++V+FIETSAKAGYNVKQLFRRVAAALPGMD+T+
Sbjct: 134 MLVGNKTDLADKRQITTEEGEQRAKEMSVLFIETSAKAGYNVKQLFRRVAAALPGMDTTQ 193
Query: 350 NKPPED 355
+K ED
Sbjct: 194 DKSRED 199
>gi|73535740|pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 149/223 (66%), Positives = 154/223 (69%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G+PLRKFKLVFLGEQSVGKTSL ITRFMYDSFDNTYQA
Sbjct: 1 GSPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDNTYQA 37
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT
Sbjct: 38 TIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQT 97
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
+KWIDDVRTERGSDVIIML
Sbjct: 98 TKWIDDVRTERGSDVIIML----------------------------------------- 116
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 117 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 159
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 108/118 (91%), Positives = 112/118 (94%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 53 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM
Sbjct: 113 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 170
>gi|61806504|ref|NP_001013485.1| ras-related protein Rab-6B [Danio rerio]
gi|60552244|gb|AAH91529.1| Zgc:112018 [Danio rerio]
Length = 208
Score = 278 bits (710), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 150/230 (65%), Positives = 156/230 (67%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS DFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSMGSDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF TSKWIDDVRTERGSDVIIML
Sbjct: 98 INSFQLTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL +KRQ++ EEGE++AKELNVMFIETSAK G NVKQ+
Sbjct: 124 -------VGNKTDLEEKRQITIEEGEQRAKELNVMFIETSAKTGSNVKQL 166
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 106/127 (83%), Positives = 115/127 (90%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF TSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNINSFQLTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL +KRQ++ EEGE++AKELNVMFIETSAK G NVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLEEKRQITIEEGEQRAKELNVMFIETSAKTGSNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPE 354
++ E
Sbjct: 180 LDDNNKE 186
>gi|77681452|ref|NP_001029351.1| ras-related protein Rab-6B [Danio rerio]
gi|71682167|gb|AAI00012.1| RAB6B, member RAS oncogene family [Danio rerio]
Length = 215
Score = 277 bits (708), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 151/237 (63%), Positives = 159/237 (67%), Gaps = 71/237 (29%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS DFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSVGNDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTV-------RLQLWDTAGQERFRSLIPSYIRDSTVAV 113
FDNTYQATIGIDFLSKTMYLEDRT+ RLQLWDTAGQERFRSLIPSYIRDSTVAV
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTLGVSDLQARLQLWDTAGQERFRSLIPSYIRDSTVAV 97
Query: 114 VVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID 173
VVYDITN NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 98 VVYDITNVNSFQQTSKWIDDVRTERGSDVIIML--------------------------- 130
Query: 174 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQ+
Sbjct: 131 --------------VGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQL 173
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 108/126 (85%), Positives = 116/126 (92%)
Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI 288
Q RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDVI
Sbjct: 68 QARLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTSKWIDDVRTERGSDVI 127
Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDST 348
IMLVGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQLFRRVAAALPGM+S
Sbjct: 128 IMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVAAALPGMESM 187
Query: 349 ENKPPE 354
+ E
Sbjct: 188 QETSKE 193
>gi|327277372|ref|XP_003223439.1| PREDICTED: ras-related protein Rab-6A-like [Anolis carolinensis]
Length = 215
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 144/225 (64%), Positives = 156/225 (69%), Gaps = 64/225 (28%)
Query: 6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTY 65
+FGNPLRKFKLVFLGEQSVGKTSL ITRFMYDSFDNTY
Sbjct: 13 EFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDNTY 49
Query: 66 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 125
QATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS AV+V+D+TN NSF
Sbjct: 50 QATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVIVFDLTNLNSFQ 109
Query: 126 QTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVII 185
QTSKWIDDVRTERGSDVIIML
Sbjct: 110 QTSKWIDDVRTERGSDVIIML--------------------------------------- 130
Query: 186 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQ++TEEGE++AKEL+VMFIETSAK GYNVKQ+
Sbjct: 131 --VGNKTDLADKRQITTEEGEQRAKELSVMFIETSAKTGYNVKQL 173
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 106/128 (82%), Positives = 118/128 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AV+V+D+TN NSF QTSKWIDDVRTERGSDV
Sbjct: 67 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVIVFDLTNLNSFQQTSKWIDDVRTERGSDV 126
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQ++TEEGE++AKEL+VMFIETSAK GYNVKQLFRRVAAALPGMDS
Sbjct: 127 IIMLVGNKTDLADKRQITTEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVAAALPGMDS 186
Query: 348 TENKPPED 355
T K +D
Sbjct: 187 TPEKSKDD 194
>gi|318054582|ref|NP_001187853.1| ras-related protein Rab-6B [Ictalurus punctatus]
gi|308324148|gb|ADO29209.1| ras-related protein rab-6b [Ictalurus punctatus]
Length = 208
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 148/230 (64%), Positives = 155/230 (67%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS DFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSVGSDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYD+TN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDVTN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF TSKWI+DVRTERGSDVIIML
Sbjct: 98 VNSFQLTSKWIEDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL +KRQ+ EEGE++AKELNVMFIETSAK G NVKQ+
Sbjct: 124 -------VGNKTDLEEKRQILVEEGEQRAKELNVMFIETSAKTGTNVKQL 166
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 102/120 (85%), Positives = 111/120 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYD+TN NSF TSKWI+DVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDVTNVNSFQLTSKWIEDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL +KRQ+ EEGE++AKELNVMFIETSAK G NVKQLFRRVAAALPGM++
Sbjct: 120 IIMLVGNKTDLEEKRQILVEEGEQRAKELNVMFIETSAKTGTNVKQLFRRVAAALPGMEN 179
>gi|66911325|gb|AAH97051.1| Zgc:63637 protein [Danio rerio]
Length = 211
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 146/229 (63%), Positives = 153/229 (66%), Gaps = 64/229 (27%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
+ G+FGNPLRKFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 5 TGGGEFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 41
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS AVVVYDI N
Sbjct: 42 DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDIANL 101
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 102 NSFQQTSKWIDDVRTERGSDVIIML----------------------------------- 126
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL DKRQVS E E+KA+EL VM+IETSAKAGYNVKQ+
Sbjct: 127 ------VGNKTDLGDKRQVSVEAAEKKARELGVMYIETSAKAGYNVKQL 169
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/128 (84%), Positives = 113/128 (88%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDI N NSF QTSKWIDDVRTERGSDV
Sbjct: 63 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDIANLNSFQQTSKWIDDVRTERGSDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL DKRQVS E E+KA+EL VM+IETSAKAGYNVKQLFRRVAAALPGMDS
Sbjct: 123 IIMLVGNKTDLGDKRQVSVEAAEKKARELGVMYIETSAKAGYNVKQLFRRVAAALPGMDS 182
Query: 348 TENKPPED 355
T K ED
Sbjct: 183 TPEKSKED 190
>gi|410924267|ref|XP_003975603.1| PREDICTED: ras-related protein Rab-6B-like isoform 2 [Takifugu
rubripes]
Length = 219
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 151/241 (62%), Positives = 158/241 (65%), Gaps = 75/241 (31%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GD GNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDLGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTV-----------RLQLWDTAGQERFRSLIPSYIRDS 109
FDNTYQATIGIDFLSKTMYLEDRTV RLQLWDTAGQERFRSLIPSYIRDS
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVGNLDFRLSLQVRLQLWDTAGQERFRSLIPSYIRDS 97
Query: 110 TVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS 169
TVAVVVYDITN NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 98 TVAVVVYDITNVNSFQQTSKWIDDVRTERGSDVIIML----------------------- 134
Query: 170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 229
VGNKTDL +KRQ++ EEGE++AKELNVMFIETSAK G NVKQ
Sbjct: 135 ------------------VGNKTDLEEKRQITIEEGEQRAKELNVMFIETSAKTGCNVKQ 176
Query: 230 V 230
+
Sbjct: 177 L 177
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 109/126 (86%), Positives = 117/126 (92%)
Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI 288
QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDVI
Sbjct: 72 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTSKWIDDVRTERGSDVI 131
Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDST 348
IMLVGNKTDL +KRQ++ EEGE++AKELNVMFIETSAK G NVKQLFRRVAAALPGM+S
Sbjct: 132 IMLVGNKTDLEEKRQITIEEGEQRAKELNVMFIETSAKTGCNVKQLFRRVAAALPGMESL 191
Query: 349 ENKPPE 354
++ PE
Sbjct: 192 DDANPE 197
>gi|320166564|gb|EFW43463.1| RAB6A [Capsaspora owczarzaki ATCC 30864]
Length = 223
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 147/225 (65%), Positives = 155/225 (68%), Gaps = 64/225 (28%)
Query: 6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTY 65
+FGNP+RKFKLVFLGEQSVGKTSL ITRFMYDSFD+TY
Sbjct: 18 EFGNPMRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDSTY 54
Query: 66 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 125
QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN NSF
Sbjct: 55 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRNSFQ 114
Query: 126 QTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVII 185
QT+KWIDDVR ERG+DVIIML
Sbjct: 115 QTTKWIDDVRAERGNDVIIML--------------------------------------- 135
Query: 186 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL DKRQVS EEGE K+KELNVMFIETSAKAGYNVKQ+
Sbjct: 136 --VGNKTDLGDKRQVSIEEGEAKSKELNVMFIETSAKAGYNVKQL 178
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 109/128 (85%), Positives = 119/128 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN NSF QT+KWIDDVR ERG+DV
Sbjct: 72 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRNSFQQTTKWIDDVRAERGNDV 131
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL DKRQVS EEGE K+KELNVMFIETSAKAGYNVKQLFRRVAAALPGM++
Sbjct: 132 IIMLVGNKTDLGDKRQVSIEEGEAKSKELNVMFIETSAKAGYNVKQLFRRVAAALPGMEA 191
Query: 348 TENKPPED 355
+ +KP +D
Sbjct: 192 SPDKPNKD 199
>gi|432916107|ref|XP_004079295.1| PREDICTED: ras-related protein Rab-6B-like isoform 2 [Oryzias
latipes]
Length = 217
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 150/239 (62%), Positives = 157/239 (65%), Gaps = 73/239 (30%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GD GNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDLGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTV---------RLQLWDTAGQERFRSLIPSYIRDSTV 111
FDNTYQATIGIDFLSKTMYLEDRTV RLQLWDTAGQERFRSLIPSYIRDSTV
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVGHECFCLQVRLQLWDTAGQERFRSLIPSYIRDSTV 97
Query: 112 AVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW 171
AVVVYDITN NSF QT KWIDDVRTERGSDVIIML
Sbjct: 98 AVVVYDITNVNSFQQTCKWIDDVRTERGSDVIIML------------------------- 132
Query: 172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL +KRQ++ EEGE++AKELNVMFIETSAK G NVKQ+
Sbjct: 133 ----------------VGNKTDLEEKRQITIEEGEQRAKELNVMFIETSAKTGSNVKQL 175
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 108/126 (85%), Positives = 116/126 (92%)
Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI 288
QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT KWIDDVRTERGSDVI
Sbjct: 70 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTCKWIDDVRTERGSDVI 129
Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDST 348
IMLVGNKTDL +KRQ++ EEGE++AKELNVMFIETSAK G NVKQLFRRVAAALPGM+S
Sbjct: 130 IMLVGNKTDLEEKRQITIEEGEQRAKELNVMFIETSAKTGSNVKQLFRRVAAALPGMESL 189
Query: 349 ENKPPE 354
++ PE
Sbjct: 190 DDANPE 195
>gi|395757271|ref|XP_003780268.1| PREDICTED: ras-related protein Rab-6C-like [Pongo abelii]
Length = 254
Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 147/230 (63%), Positives = 153/230 (66%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPL KFKLVFLGEQSV KTSLI TRFMYDS
Sbjct: 1 MSAGGDFGNPLTKFKLVFLGEQSVAKTSLI-----------------------TRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLED T+RL LWDTAGQER RSLIPSYIRDS AVVVY ITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDGTIRLPLWDTAGQERLRSLIPSYIRDSAAAVVVYGITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVII L
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIITL---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAK+LNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKQLNVMFIETSAKAGYNVKQL 166
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 106/126 (84%), Positives = 113/126 (89%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
+RL LWDTAGQER RSLIPSYIRDS AVVVY ITN NSF QT+KWIDDVRTERGSDVII
Sbjct: 62 IRLPLWDTAGQERLRSLIPSYIRDSAAAVVVYGITNVNSFQQTTKWIDDVRTERGSDVII 121
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
LVGNKTDL+DKRQVS EEGERKAK+LNVMFIETSAKAGYNVKQLFRRVAA LPGM+ST+
Sbjct: 122 TLVGNKTDLADKRQVSIEEGERKAKQLNVMFIETSAKAGYNVKQLFRRVAAVLPGMESTQ 181
Query: 350 NKPPED 355
+ ED
Sbjct: 182 DGSRED 187
>gi|209737742|gb|ACI69740.1| Ras-related protein Rab-6B [Salmo salar]
Length = 212
Score = 273 bits (699), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 149/234 (63%), Positives = 156/234 (66%), Gaps = 68/234 (29%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GD GNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDLGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVR----LQLWDTAGQERFRSLIPSYIRDSTVAVVVY 116
FDNTYQATIGIDFLSKTMYLEDRTVR LQLWDTAGQERFRSLIPSYIRDSTVAVVVY
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRNSVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY 97
Query: 117 DITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVR 176
DITN NSF QT KWIDDVRTERGSDVIIML
Sbjct: 98 DITNMNSFQQTCKWIDDVRTERGSDVIIML------------------------------ 127
Query: 177 TERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL +KRQ++ E GE++AKELNVMFIETSAK G NVKQ+
Sbjct: 128 -----------VGNKTDLEEKRQITIEAGEQRAKELNVMFIETSAKTGTNVKQL 170
Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 105/125 (84%), Positives = 113/125 (90%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT KWIDDVRTERGSDVII
Sbjct: 66 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNMNSFQQTCKWIDDVRTERGSDVII 125
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
MLVGNKTDL +KRQ++ E GE++AKELNVMFIETSAK G NVKQLFRRVAA LPGM+S +
Sbjct: 126 MLVGNKTDLEEKRQITIEAGEQRAKELNVMFIETSAKTGTNVKQLFRRVAATLPGMESLD 185
Query: 350 NKPPE 354
+ PE
Sbjct: 186 DVNPE 190
>gi|259906587|gb|ACW84383.1| GTPase, partial [Fenneropenaeus chinensis]
Length = 155
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 149/218 (68%), Positives = 150/218 (68%), Gaps = 64/218 (29%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
SG+FGNPL LVFLGEQSVGKTSL ITRFMYDSFDN
Sbjct: 2 SGEFGNPLNVISLVFLGEQSVGKTSL-----------------------ITRFMYDSFDN 38
Query: 64 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS
Sbjct: 39 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 98
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
FHQTSKWIDDVRTERGSDVIIML
Sbjct: 99 FHQTSKWIDDVRTERGSDVIIML------------------------------------- 121
Query: 184 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSA 221
VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSA
Sbjct: 122 ----VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSA 155
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 96/98 (97%), Positives = 97/98 (98%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV
Sbjct: 58 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSA 325
IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSA
Sbjct: 118 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSA 155
>gi|110590290|pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
gi|110590291|pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
gi|110590292|pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
gi|110590293|pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 148/218 (67%), Positives = 151/218 (69%), Gaps = 64/218 (29%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
KFKLVFLGEQSVGKTSL ITRFMYDSFDNTYQATIGID
Sbjct: 1 KFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDNTYQATIGID 37
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWID
Sbjct: 38 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWID 97
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
DVRTERGSDVIIML VGNKT
Sbjct: 98 DVRTERGSDVIIML-----------------------------------------VGNKT 116
Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
DL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 117 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 154
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 108/115 (93%), Positives = 111/115 (96%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 48 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 107
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL
Sbjct: 108 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162
>gi|17553774|ref|NP_498993.1| Protein RAB-6.1 [Caenorhabditis elegans]
gi|464527|sp|P34213.1|RAB6A_CAEEL RecName: Full=Ras-related protein Rab-6.1
gi|3877850|emb|CAA77590.1| Protein RAB-6.1 [Caenorhabditis elegans]
Length = 205
Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 144/227 (63%), Positives = 157/227 (69%), Gaps = 65/227 (28%)
Query: 5 GDF-GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
DF N L+KFKLVFLGEQSVGKTS+I TRFMYDSFDN
Sbjct: 2 ADFTNNALKKFKLVFLGEQSVGKTSII-----------------------TRFMYDSFDN 38
Query: 64 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
TYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITNANS
Sbjct: 39 TYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNANS 98
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
FHQT+KW+DDVR ERG DVII+L
Sbjct: 99 FHQTTKWVDDVRNERGCDVIIVL------------------------------------- 121
Query: 184 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVSTE+GE+KA++LNVMFIETSAKAGYNVKQ+
Sbjct: 122 ----VGNKTDLADKRQVSTEDGEKKARDLNVMFIETSAKAGYNVKQL 164
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 104/137 (75%), Positives = 119/137 (86%), Gaps = 9/137 (6%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITNANSFHQT+KW+DDVR ERG DV
Sbjct: 58 RTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNANSFHQTTKWVDDVRNERGCDV 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKRQVSTE+GE+KA++LNVMFIETSAKAGYNVKQLFR++A ALPG+
Sbjct: 118 IIVLVGNKTDLADKRQVSTEDGEKKARDLNVMFIETSAKAGYNVKQLFRKIATALPGIVQ 177
Query: 348 TENK---------PPED 355
E PP+D
Sbjct: 178 EETPEQPNIVIMNPPKD 194
>gi|399163145|gb|AFP33148.1| rab-6.1, partial [Caenorhabditis elegans]
Length = 204
Score = 271 bits (692), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 144/227 (63%), Positives = 157/227 (69%), Gaps = 65/227 (28%)
Query: 5 GDF-GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
DF N L+KFKLVFLGEQSVGKTS+I TRFMYDSFDN
Sbjct: 1 ADFTNNALKKFKLVFLGEQSVGKTSII-----------------------TRFMYDSFDN 37
Query: 64 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
TYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITNANS
Sbjct: 38 TYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNANS 97
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
FHQT+KW+DDVR ERG DVII+L
Sbjct: 98 FHQTTKWVDDVRNERGCDVIIVL------------------------------------- 120
Query: 184 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVSTE+GE+KA++LNVMFIETSAKAGYNVKQ+
Sbjct: 121 ----VGNKTDLADKRQVSTEDGEKKARDLNVMFIETSAKAGYNVKQL 163
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 104/137 (75%), Positives = 119/137 (86%), Gaps = 9/137 (6%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITNANSFHQT+KW+DDVR ERG DV
Sbjct: 57 RTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNANSFHQTTKWVDDVRNERGCDV 116
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKRQVSTE+GE+KA++LNVMFIETSAKAGYNVKQLFR++A ALPG+
Sbjct: 117 IIVLVGNKTDLADKRQVSTEDGEKKARDLNVMFIETSAKAGYNVKQLFRKIATALPGIVQ 176
Query: 348 TENK---------PPED 355
E PP+D
Sbjct: 177 EETPEQPNIVIMNPPKD 193
>gi|308471931|ref|XP_003098195.1| CRE-RAB-6.1 protein [Caenorhabditis remanei]
gi|308269346|gb|EFP13299.1| CRE-RAB-6.1 protein [Caenorhabditis remanei]
Length = 205
Score = 271 bits (692), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 144/227 (63%), Positives = 157/227 (69%), Gaps = 65/227 (28%)
Query: 5 GDF-GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
DF N L+KFKLVFLGEQSVGKTS+I TRFMYDSFDN
Sbjct: 2 ADFTNNALKKFKLVFLGEQSVGKTSII-----------------------TRFMYDSFDN 38
Query: 64 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
TYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITNANS
Sbjct: 39 TYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNANS 98
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
FHQT+KW+DDVR ERG DVII+L
Sbjct: 99 FHQTTKWVDDVRNERGCDVIIVL------------------------------------- 121
Query: 184 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVSTE+GE+KA++LNVMFIETSAKAGYNVKQ+
Sbjct: 122 ----VGNKTDLADKRQVSTEDGEKKARDLNVMFIETSAKAGYNVKQL 164
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 104/137 (75%), Positives = 119/137 (86%), Gaps = 9/137 (6%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITNANSFHQT+KW+DDVR ERG DV
Sbjct: 58 RTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNANSFHQTTKWVDDVRNERGCDV 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKRQVSTE+GE+KA++LNVMFIETSAKAGYNVKQLFR++A ALPG+
Sbjct: 118 IIVLVGNKTDLADKRQVSTEDGEKKARDLNVMFIETSAKAGYNVKQLFRKIATALPGIVQ 177
Query: 348 TENK---------PPED 355
E PP+D
Sbjct: 178 EETPEQPNIVIMNPPKD 194
>gi|268574940|ref|XP_002642449.1| C. briggsae CBR-RAB-6.1 protein [Caenorhabditis briggsae]
Length = 205
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 144/227 (63%), Positives = 157/227 (69%), Gaps = 65/227 (28%)
Query: 5 GDF-GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
DF N L+KFKLVFLGEQSVGKTS+I TRFMYDSFDN
Sbjct: 2 ADFTNNALKKFKLVFLGEQSVGKTSII-----------------------TRFMYDSFDN 38
Query: 64 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
TYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITNANS
Sbjct: 39 TYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNANS 98
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
FHQT+KW+DDVR ERG DVII+L
Sbjct: 99 FHQTTKWVDDVRNERGCDVIIVL------------------------------------- 121
Query: 184 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVSTE+GE+KA++LNVMFIETSAKAGYNVKQ+
Sbjct: 122 ----VGNKTDLADKRQVSTEDGEKKARDLNVMFIETSAKAGYNVKQL 164
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 104/137 (75%), Positives = 119/137 (86%), Gaps = 9/137 (6%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITNANSFHQT+KW+DDVR ERG DV
Sbjct: 58 RTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNANSFHQTTKWVDDVRNERGCDV 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKRQVSTE+GE+KA++LNVMFIETSAKAGYNVKQLFR++A ALPG+
Sbjct: 118 IIVLVGNKTDLADKRQVSTEDGEKKARDLNVMFIETSAKAGYNVKQLFRKIATALPGIVQ 177
Query: 348 TENK---------PPED 355
E PP+D
Sbjct: 178 EETPEQPNIVIMNPPKD 194
>gi|341900805|gb|EGT56740.1| CBN-RAB-6.1 protein [Caenorhabditis brenneri]
Length = 205
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 144/226 (63%), Positives = 157/226 (69%), Gaps = 65/226 (28%)
Query: 6 DF-GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT 64
DF N L+KFKLVFLGEQSVGKTS+I TRFMYDSFDNT
Sbjct: 3 DFTNNALKKFKLVFLGEQSVGKTSII-----------------------TRFMYDSFDNT 39
Query: 65 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 124
YQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITNANSF
Sbjct: 40 YQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNANSF 99
Query: 125 HQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVI 184
HQT+KW+DDVR ERG DVII+L
Sbjct: 100 HQTTKWVDDVRNERGCDVIIVL-------------------------------------- 121
Query: 185 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVSTE+GE+KA++LNVMFIETSAKAGYNVKQ+
Sbjct: 122 ---VGNKTDLADKRQVSTEDGEKKARDLNVMFIETSAKAGYNVKQL 164
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 104/137 (75%), Positives = 119/137 (86%), Gaps = 9/137 (6%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITNANSFHQT+KW+DDVR ERG DV
Sbjct: 58 RTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNANSFHQTTKWVDDVRNERGCDV 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKRQVSTE+GE+KA++LNVMFIETSAKAGYNVKQLFR++A ALPG+
Sbjct: 118 IIVLVGNKTDLADKRQVSTEDGEKKARDLNVMFIETSAKAGYNVKQLFRKIATALPGIVQ 177
Query: 348 TENK---------PPED 355
E PP+D
Sbjct: 178 EEAPEQPNIVIMNPPKD 194
>gi|260796185|ref|XP_002593085.1| hypothetical protein BRAFLDRAFT_210049 [Branchiostoma floridae]
gi|229278309|gb|EEN49096.1| hypothetical protein BRAFLDRAFT_210049 [Branchiostoma floridae]
Length = 196
Score = 270 bits (690), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 140/187 (74%), Positives = 144/187 (77%), Gaps = 41/187 (21%)
Query: 44 ATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP 103
++IVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP
Sbjct: 7 SSIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP 66
Query: 104 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHAN 163
SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIML
Sbjct: 67 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIML----------------- 109
Query: 164 SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA 223
VGNKTDLSDKRQVS E+GERKAKELNVMFIETSAK
Sbjct: 110 ------------------------VGNKTDLSDKRQVSLEDGERKAKELNVMFIETSAKT 145
Query: 224 GYNVKQV 230
GYNVKQ+
Sbjct: 146 GYNVKQL 152
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 114/124 (91%), Positives = 121/124 (97%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV
Sbjct: 46 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 105
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLSDKRQVS E+GERKAKELNVMFIETSAK GYNVKQLFRRVAAALPGM+S
Sbjct: 106 IIMLVGNKTDLSDKRQVSLEDGERKAKELNVMFIETSAKTGYNVKQLFRRVAAALPGMES 165
Query: 348 TENK 351
++++
Sbjct: 166 SQDQ 169
>gi|449498485|ref|XP_004177271.1| PREDICTED: ras-related protein Rab-6A-like [Taeniopygia guttata]
Length = 211
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 146/233 (62%), Positives = 156/233 (66%), Gaps = 67/233 (28%)
Query: 1 MSSSGD---FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFM 57
MS+ G P ++FKLV LGEQSVGKTSL ITRFM
Sbjct: 1 MSAPGQRRRLREPAQEFKLVSLGEQSVGKTSL-----------------------ITRFM 37
Query: 58 YDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYD 117
YDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST+AVVVYD
Sbjct: 38 YDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTIAVVVYD 97
Query: 118 ITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRT 177
ITN NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 98 ITNLNSFQQTSKWIDDVRTERGSDVIIML------------------------------- 126
Query: 178 ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQ++TEEGE++AKELNVMFIETSAK GYNVKQ+
Sbjct: 127 ----------VGNKTDLADKRQITTEEGEQRAKELNVMFIETSAKTGYNVKQL 169
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 113/128 (88%), Positives = 120/128 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDST+AVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 63 RTVRLQLWDTAGQERFRSLIPSYIRDSTIAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQ++TEEGE++AKELNVMFIETSAK GYNVKQLFRRVAAALPGMDS
Sbjct: 123 IIMLVGNKTDLADKRQITTEEGEQRAKELNVMFIETSAKTGYNVKQLFRRVAAALPGMDS 182
Query: 348 TENKPPED 355
T K ED
Sbjct: 183 TPEKSKED 190
>gi|313232635|emb|CBY19305.1| unnamed protein product [Oikopleura dioica]
Length = 212
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 145/230 (63%), Positives = 152/230 (66%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MSS D PLRK+K+VFLG+QSVGKTSL ITRFMYDS
Sbjct: 1 MSSPVDSVKPLRKYKVVFLGKQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG ERFRSLIPSYIRDSTVAVVVYD+ N
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGHERFRSLIPSYIRDSTVAVVVYDVAN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QTSKWIDDVR ERG+DVIIML
Sbjct: 98 VNSFQQTSKWIDDVRAERGTDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKRQVS +EGERKA EL VMFIETSAK GYNVKQ+
Sbjct: 124 -------VGNKTDLSDKRQVSVDEGERKAAELKVMFIETSAKTGYNVKQL 166
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 106/124 (85%), Positives = 112/124 (90%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAG ERFRSLIPSYIRDSTVAVVVYD+ N NSF QTSKWIDDVR ERG+DV
Sbjct: 60 RTVRLQLWDTAGHERFRSLIPSYIRDSTVAVVVYDVANVNSFQQTSKWIDDVRAERGTDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLSDKRQVS +EGERKA EL VMFIETSAK GYNVKQLFRRVAAALPGM+
Sbjct: 120 IIMLVGNKTDLSDKRQVSVDEGERKAAELKVMFIETSAKTGYNVKQLFRRVAAALPGMEV 179
Query: 348 TENK 351
E+K
Sbjct: 180 KEDK 183
>gi|328767797|gb|EGF77845.1| hypothetical protein BATDEDRAFT_20546 [Batrachochytrium
dendrobatidis JAM81]
Length = 203
Score = 268 bits (684), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 142/228 (62%), Positives = 155/228 (67%), Gaps = 64/228 (28%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
++ +F NPLRKFKLVFLGEQSVGKTSL ITRFMYD+FD
Sbjct: 2 ANAEFSNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDTFD 38
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
NTYQATIGIDFLSKTMYLEDRT RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN N
Sbjct: 39 NTYQATIGIDFLSKTMYLEDRTTRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRN 98
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF TSKW+DDVR ERG+DVI++L
Sbjct: 99 SFVNTSKWVDDVRAERGNDVIVVL------------------------------------ 122
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSD+RQVST+EGE+KAKE NVMFIETSAKAGYNVK +
Sbjct: 123 -----VGNKTDLSDERQVSTDEGEKKAKEFNVMFIETSAKAGYNVKAL 165
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 100/125 (80%), Positives = 114/125 (91%), Gaps = 2/125 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN NSF TSKW+DDVR ERG+DV
Sbjct: 59 RTTRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRNSFVNTSKWVDDVRAERGNDV 118
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
I++LVGNKTDLSD+RQVST+EGE+KAKE NVMFIETSAKAGYNVK LF+++A ALPGM++
Sbjct: 119 IVVLVGNKTDLSDERQVSTDEGEKKAKEFNVMFIETSAKAGYNVKALFKKIAMALPGMET 178
Query: 348 --TEN 350
TEN
Sbjct: 179 QGTEN 183
>gi|226478096|emb|CAX72741.1| RAB family [Schistosoma japonicum]
gi|226478548|emb|CAX72769.1| RAB family [Schistosoma japonicum]
gi|257206356|emb|CAX82829.1| RAB family [Schistosoma japonicum]
gi|257206638|emb|CAX82947.1| RAB family [Schistosoma japonicum]
Length = 205
Score = 268 bits (684), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 152/272 (55%), Positives = 165/272 (60%), Gaps = 68/272 (25%)
Query: 5 GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT 64
DF NPLRKFKLVFLGEQSVGKTSL ITRFMYD+F+N
Sbjct: 2 ADFNNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDTFENL 38
Query: 65 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 124
YQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI NA SF
Sbjct: 39 YQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDICNAESF 98
Query: 125 HQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVI 184
TSKWIDDVR ERGSDVIIML
Sbjct: 99 QLTSKWIDDVRNERGSDVIIML-------------------------------------- 120
Query: 185 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFR 244
VGNKTDLSDKR V+TEEGER A +LNVMFIETSAKAGYNVK L+ E
Sbjct: 121 ---VGNKTDLSDKRTVTTEEGERLAGQLNVMFIETSAKAGYNVK----VLFRRIATELLN 173
Query: 245 SLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 276
P+ D + V ++D + F+Q W
Sbjct: 174 RENPAPRHDDFIEVKLHDASKDTDFNQRVCWC 205
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 100/126 (79%), Positives = 107/126 (84%), Gaps = 3/126 (2%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI NA SF TSKWIDDVR ERGSDV
Sbjct: 57 RTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDICNAESFQLTSKWIDDVRNERGSDV 116
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLSDKR V+TEEGER A +LNVMFIETSAKAGYNVK LFRR+A L +
Sbjct: 117 IIMLVGNKTDLSDKRTVTTEEGERLAGQLNVMFIETSAKAGYNVKVLFRRIATELL---N 173
Query: 348 TENKPP 353
EN P
Sbjct: 174 RENPAP 179
>gi|343427853|emb|CBQ71379.1| probable YPT6-GTP-binding protein of the rab family [Sporisorium
reilianum SRZ2]
Length = 218
Score = 268 bits (684), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 142/227 (62%), Positives = 154/227 (67%), Gaps = 64/227 (28%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
+S+ +FG PLRKFKLVFLGEQSVGKTSL ITRFMYD+F
Sbjct: 7 ASTAEFGQPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDTF 43
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN
Sbjct: 44 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNR 103
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF TSKW+DDVR ERG+DVII+L
Sbjct: 104 ASFQNTSKWVDDVRAERGNDVIIVL----------------------------------- 128
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDLSDKRQV+TEE E+KA+E NVMFIETSAKAG+NVK
Sbjct: 129 ------VGNKTDLSDKRQVTTEEAEKKAQEFNVMFIETSAKAGHNVK 169
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 97/119 (81%), Positives = 109/119 (91%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN SF TSKW+DDVR ERG+DV
Sbjct: 65 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFQNTSKWVDDVRAERGNDV 124
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II+LVGNKTDLSDKRQV+TEE E+KA+E NVMFIETSAKAG+NVK LF+++A ALPGMD
Sbjct: 125 IIVLVGNKTDLSDKRQVTTEEAEKKAQEFNVMFIETSAKAGHNVKVLFKKIAQALPGMD 183
>gi|56757515|gb|AAW26922.1| SJCHGC02777 protein [Schistosoma japonicum]
Length = 205
Score = 267 bits (682), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 152/272 (55%), Positives = 165/272 (60%), Gaps = 68/272 (25%)
Query: 5 GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT 64
DF NPLRKFKLVFLGEQSVGKTSL ITRFMYD+F+N
Sbjct: 2 ADFNNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDTFENL 38
Query: 65 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 124
YQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI NA SF
Sbjct: 39 YQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDICNAESF 98
Query: 125 HQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVI 184
TSKWIDDVR ERGSDVIIML
Sbjct: 99 QLTSKWIDDVRNERGSDVIIML-------------------------------------- 120
Query: 185 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFR 244
VGNKTDLSDKR V+TEEGER A +LNVMFIETSAKAGYNVK L+ E
Sbjct: 121 ---VGNKTDLSDKRTVTTEEGERLAGQLNVMFIETSAKAGYNVK----VLFRRIATELLN 173
Query: 245 SLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 276
P+ D + V ++D + F+Q W
Sbjct: 174 RENPAPRHDDFMEVKLHDASKDTDFNQRVCWC 205
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 100/126 (79%), Positives = 107/126 (84%), Gaps = 3/126 (2%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI NA SF TSKWIDDVR ERGSDV
Sbjct: 57 RTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDICNAESFQLTSKWIDDVRNERGSDV 116
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLSDKR V+TEEGER A +LNVMFIETSAKAGYNVK LFRR+A L +
Sbjct: 117 IIMLVGNKTDLSDKRTVTTEEGERLAGQLNVMFIETSAKAGYNVKVLFRRIATELL---N 173
Query: 348 TENKPP 353
EN P
Sbjct: 174 RENPAP 179
>gi|395517929|ref|XP_003763122.1| PREDICTED: ras-related protein Rab-6A-like [Sarcophilus harrisii]
Length = 214
Score = 267 bits (682), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 140/193 (72%), Positives = 144/193 (74%), Gaps = 41/193 (21%)
Query: 38 FDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 97
F N+Y VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER
Sbjct: 21 FVNSYGKIKVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 80
Query: 98 FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHL 157
FRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 81 FRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML----------- 129
Query: 158 SFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFI 217
VGNKTDL+DKRQVS EEGERKAKELNVMFI
Sbjct: 130 ------------------------------VGNKTDLADKRQVSIEEGERKAKELNVMFI 159
Query: 218 ETSAKAGYNVKQV 230
ETSAKAGYNVKQ+
Sbjct: 160 ETSAKAGYNVKQL 172
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 116/128 (90%), Positives = 122/128 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 66 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 125
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 126 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 185
Query: 348 TENKPPED 355
T++K ED
Sbjct: 186 TQDKSRED 193
>gi|326437703|gb|EGD83273.1| small GTP binding protein RAB6A [Salpingoeca sp. ATCC 50818]
Length = 207
Score = 266 bits (681), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 144/228 (63%), Positives = 154/228 (67%), Gaps = 64/228 (28%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
S D + LRKFKLVFLGEQSVGKTSL ITRFMYDSFD
Sbjct: 2 SQQDINSSLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFD 38
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN +
Sbjct: 39 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRS 98
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF QTS+WIDDVR ERG DVIIML
Sbjct: 99 SFQQTSRWIDDVRAERGQDVIIML------------------------------------ 122
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS +EGER+AKELNVMFIETSAKAG+NVK++
Sbjct: 123 -----VGNKTDLADKRQVSIDEGERRAKELNVMFIETSAKAGHNVKEL 165
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 103/124 (83%), Positives = 115/124 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN +SF QTS+WIDDVR ERG DV
Sbjct: 59 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRSSFQQTSRWIDDVRAERGQDV 118
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS +EGER+AKELNVMFIETSAKAG+NVK+LFRRVA ALPGM++
Sbjct: 119 IIMLVGNKTDLADKRQVSIDEGERRAKELNVMFIETSAKAGHNVKELFRRVAGALPGMEA 178
Query: 348 TENK 351
+ K
Sbjct: 179 SAEK 182
>gi|226478066|emb|CAX72726.1| RAB family [Schistosoma japonicum]
Length = 205
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 151/272 (55%), Positives = 165/272 (60%), Gaps = 68/272 (25%)
Query: 5 GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT 64
DF NPLRKFKLVFLGEQSVGKTSL ITRFMYD+F+N
Sbjct: 2 ADFNNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDTFENL 38
Query: 65 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 124
YQATIGI+FLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI NA SF
Sbjct: 39 YQATIGINFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDICNAESF 98
Query: 125 HQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVI 184
TSKWIDDVR ERGSDVIIML
Sbjct: 99 QLTSKWIDDVRNERGSDVIIML-------------------------------------- 120
Query: 185 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFR 244
VGNKTDLSDKR V+TEEGER A +LNVMFIETSAKAGYNVK L+ E
Sbjct: 121 ---VGNKTDLSDKRTVTTEEGERLAGQLNVMFIETSAKAGYNVK----VLFRRIATELLN 173
Query: 245 SLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 276
P+ D + V ++D + F+Q W
Sbjct: 174 RENPAPRHDDFIEVKLHDASKDTDFNQRVCWC 205
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 100/126 (79%), Positives = 107/126 (84%), Gaps = 3/126 (2%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI NA SF TSKWIDDVR ERGSDV
Sbjct: 57 RTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDICNAESFQLTSKWIDDVRNERGSDV 116
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLSDKR V+TEEGER A +LNVMFIETSAKAGYNVK LFRR+A L +
Sbjct: 117 IIMLVGNKTDLSDKRTVTTEEGERLAGQLNVMFIETSAKAGYNVKVLFRRIATELL---N 173
Query: 348 TENKPP 353
EN P
Sbjct: 174 RENPAP 179
>gi|152013703|gb|ABS19967.1| ras small monomeric GTPase Rab6 protein [Artemia franciscana]
Length = 150
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 144/214 (67%), Positives = 149/214 (69%), Gaps = 64/214 (29%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
M+SSGDFGNPLRKFKLVF GEQSVGKTSL ITRFMYDS
Sbjct: 1 MTSSGDFGNPLRKFKLVFPGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
ANSFHQTS+WIDDVRTERG+DVIIML
Sbjct: 98 ANSFHQTSRWIDDVRTERGNDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV 214
VGNKTDLSDKRQVSTEEGER+A+ELNV
Sbjct: 124 -------VGNKTDLSDKRQVSTEEGERRARELNV 150
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 90/91 (98%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS+WIDDVRTERG+DV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSRWIDDVRTERGNDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNV 318
IIMLVGNKTDLSDKRQVSTEEGER+A+ELNV
Sbjct: 120 IIMLVGNKTDLSDKRQVSTEEGERRARELNV 150
>gi|388857378|emb|CCF49052.1| probable YPT6-GTP-binding protein of the rab family [Ustilago
hordei]
Length = 218
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 141/227 (62%), Positives = 154/227 (67%), Gaps = 64/227 (28%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
+S+ +FG PLRKFKLVFLGEQSVGKTSL ITRFMYD+F
Sbjct: 7 ASTAEFGQPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDTF 43
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN
Sbjct: 44 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNR 103
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF TSKW+DDVR ERG+DVII+L
Sbjct: 104 ASFQNTSKWVDDVRAERGNDVIIVL----------------------------------- 128
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDLSDKRQV+T+E E+KA+E NVMFIETSAKAG+NVK
Sbjct: 129 ------VGNKTDLSDKRQVTTDEAEKKAQEFNVMFIETSAKAGHNVK 169
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 96/119 (80%), Positives = 109/119 (91%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN SF TSKW+DDVR ERG+DV
Sbjct: 65 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFQNTSKWVDDVRAERGNDV 124
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II+LVGNKTDLSDKRQV+T+E E+KA+E NVMFIETSAKAG+NVK LF+++A ALPGMD
Sbjct: 125 IIVLVGNKTDLSDKRQVTTDEAEKKAQEFNVMFIETSAKAGHNVKVLFKKIAQALPGMD 183
>gi|326914674|ref|XP_003203649.1| PREDICTED: ras-related protein Rab-6A-like, partial [Meleagris
gallopavo]
Length = 271
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 143/205 (69%), Positives = 148/205 (72%), Gaps = 43/205 (20%)
Query: 25 GKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 84
G T L R M + D + +VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT
Sbjct: 30 GDTGLAARAM--NRDPGMKLFLVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 87
Query: 85 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 144
VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDVII
Sbjct: 88 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVII 147
Query: 145 MLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEE 204
ML VGNKTDL+DKRQVS EE
Sbjct: 148 ML-----------------------------------------VGNKTDLADKRQVSIEE 166
Query: 205 GERKAKELNVMFIETSAKAGYNVKQ 229
GERKAKELNVMFIETSAKAGYNVKQ
Sbjct: 167 GERKAKELNVMFIETSAKAGYNVKQ 191
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 99/106 (93%), Positives = 102/106 (96%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 86 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 145
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ
Sbjct: 146 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQ 191
>gi|226478016|emb|CAX72701.1| RAB family [Schistosoma japonicum]
Length = 205
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 151/272 (55%), Positives = 164/272 (60%), Gaps = 68/272 (25%)
Query: 5 GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT 64
DF NPLRKFKLVFLG QSVGKTSL ITRFMYD+F+N
Sbjct: 2 ADFNNPLRKFKLVFLGGQSVGKTSL-----------------------ITRFMYDTFENL 38
Query: 65 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 124
YQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI NA SF
Sbjct: 39 YQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDICNAESF 98
Query: 125 HQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVI 184
TSKWIDDVR ERGSDVIIML
Sbjct: 99 QLTSKWIDDVRNERGSDVIIML-------------------------------------- 120
Query: 185 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFR 244
VGNKTDLSDKR V+TEEGER A +LNVMFIETSAKAGYNVK L+ E
Sbjct: 121 ---VGNKTDLSDKRTVTTEEGERLAGQLNVMFIETSAKAGYNVK----VLFRRIATELLN 173
Query: 245 SLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 276
P+ D + V ++D + F+Q W
Sbjct: 174 RENPAPRHDDFIEVKLHDASKDTDFNQRVCWC 205
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 100/126 (79%), Positives = 107/126 (84%), Gaps = 3/126 (2%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI NA SF TSKWIDDVR ERGSDV
Sbjct: 57 RTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDICNAESFQLTSKWIDDVRNERGSDV 116
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLSDKR V+TEEGER A +LNVMFIETSAKAGYNVK LFRR+A L +
Sbjct: 117 IIMLVGNKTDLSDKRTVTTEEGERLAGQLNVMFIETSAKAGYNVKVLFRRIATELL---N 173
Query: 348 TENKPP 353
EN P
Sbjct: 174 RENPAP 179
>gi|332814413|ref|XP_003309297.1| PREDICTED: ras-related protein Rab-6C-like [Pan troglodytes]
Length = 254
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 143/230 (62%), Positives = 150/230 (65%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GD GNPLRKFKLVFLGEQSV KTSLI TRFMYDS
Sbjct: 1 MSAGGDLGNPLRKFKLVFLGEQSVAKTSLI-----------------------TRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLED T+ L+LWDTAGQER RSLIP YIRDS AVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDGTIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVII L
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIITL---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGN+TDL+DKRQVS EEGERKAK LNV FIET AKAGYNVKQ+
Sbjct: 124 -------VGNRTDLADKRQVSIEEGERKAKGLNVRFIETRAKAGYNVKQL 166
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 102/126 (80%), Positives = 111/126 (88%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
+ L+LWDTAGQER RSLIP YIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDVII
Sbjct: 62 IGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVII 121
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
LVGN+TDL+DKRQVS EEGERKAK LNV FIET AKAGYNVKQLFRRVAAA PGM+ST+
Sbjct: 122 TLVGNRTDLADKRQVSIEEGERKAKGLNVRFIETRAKAGYNVKQLFRRVAAASPGMESTQ 181
Query: 350 NKPPED 355
++ ED
Sbjct: 182 DRSRED 187
>gi|110591381|pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
gi|110591397|pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
gi|166235341|pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
gi|166235342|pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
gi|166235343|pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 143/218 (65%), Positives = 150/218 (68%), Gaps = 64/218 (29%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
KFKLVFLGEQSVGKTSL ITRFMYDSFDNTYQATIGID
Sbjct: 2 KFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDNTYQATIGID 38
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWID
Sbjct: 39 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWID 98
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
DVRTERGSDVIIML VGNKT
Sbjct: 99 DVRTERGSDVIIML-----------------------------------------VGNKT 117
Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
DL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQ+
Sbjct: 118 DLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQL 155
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 102/115 (88%), Positives = 110/115 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 49 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 108
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
IIMLVGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQLFRRVA+AL
Sbjct: 109 IIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL 163
>gi|410057389|ref|XP_003954210.1| PREDICTED: ras-related protein Rab-6C-like [Pan troglodytes]
Length = 254
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 143/230 (62%), Positives = 150/230 (65%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GD GNPLRKFKLVFLGEQSV KTSLIT RFMYDS
Sbjct: 1 MSAGGDLGNPLRKFKLVFLGEQSVAKTSLIT-----------------------RFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLED T+ L+LWDTAGQER RSLIP YIRDS AVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDGTIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVII L
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIITL---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGN+TDL+DKRQVS EEGERKAK LNV FIET AKAGYNVKQ+
Sbjct: 124 -------VGNRTDLADKRQVSIEEGERKAKGLNVRFIETRAKAGYNVKQL 166
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 103/126 (81%), Positives = 112/126 (88%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
+ L+LWDTAGQER RSLIP YIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDVII
Sbjct: 62 IGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVII 121
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
LVGN+TDL+DKRQVS EEGERKAK LNV FIET AKAGYNVKQLFRRVAAALPGM+ST+
Sbjct: 122 TLVGNRTDLADKRQVSIEEGERKAKGLNVRFIETRAKAGYNVKQLFRRVAAALPGMESTQ 181
Query: 350 NKPPED 355
++ ED
Sbjct: 182 DRSRED 187
>gi|56757031|gb|AAW26687.1| SJCHGC02776 protein [Schistosoma japonicum]
gi|257206208|emb|CAX82755.1| RAB family [Schistosoma japonicum]
Length = 203
Score = 263 bits (673), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 143/224 (63%), Positives = 149/224 (66%), Gaps = 64/224 (28%)
Query: 5 GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT 64
DF NPLRKFKLVFLGEQSVGKTSL ITRFMYD+F+N
Sbjct: 2 ADFNNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDTFENL 38
Query: 65 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 124
YQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI NA SF
Sbjct: 39 YQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDICNAESF 98
Query: 125 HQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVI 184
TSKWIDDVR ERGSDVIIML
Sbjct: 99 QLTSKWIDDVRNERGSDVIIML-------------------------------------- 120
Query: 185 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDLSDKR V+TEEGER A +LNVMFIETSAKAGYNVK
Sbjct: 121 ---VGNKTDLSDKRTVTTEEGERLAGQLNVMFIETSAKAGYNVK 161
Score = 200 bits (508), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 100/126 (79%), Positives = 107/126 (84%), Gaps = 3/126 (2%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI NA SF TSKWIDDVR ERGSDV
Sbjct: 57 RTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDICNAESFQLTSKWIDDVRNERGSDV 116
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLSDKR V+TEEGER A +LNVMFIETSAKAGYNVK LFRR+A L +
Sbjct: 117 IIMLVGNKTDLSDKRTVTTEEGERLAGQLNVMFIETSAKAGYNVKVLFRRIATELL---N 173
Query: 348 TENKPP 353
EN P
Sbjct: 174 RENPAP 179
>gi|410045696|ref|XP_003313253.2| PREDICTED: ras-related protein Rab-6A [Pan troglodytes]
Length = 315
Score = 263 bits (673), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 134/184 (72%), Positives = 138/184 (75%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYI
Sbjct: 131 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYI 190
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
RDS AVVVYDITN NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 191 RDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML-------------------- 230
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYN
Sbjct: 231 ---------------------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 269
Query: 227 VKQV 230
VKQ+
Sbjct: 270 VKQL 273
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 112/128 (87%), Positives = 120/128 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 167 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 226
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 227 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 286
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 287 TQDRSRED 294
>gi|296415924|ref|XP_002837633.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633511|emb|CAZ81824.1| unnamed protein product [Tuber melanosporum]
Length = 208
Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 140/227 (61%), Positives = 153/227 (67%), Gaps = 64/227 (28%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
+S+G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 3 ASAGSYSNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 39
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DN YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN
Sbjct: 40 DNMYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNR 99
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF T+KW+DDVR ERG+DVII+L
Sbjct: 100 TSFQNTTKWVDDVRGERGNDVIIVL----------------------------------- 124
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDL+DKRQV+TEEGE+KAKE VMFIETSAKAG+NVK
Sbjct: 125 ------VGNKTDLNDKRQVTTEEGEKKAKEFKVMFIETSAKAGHNVK 165
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 99/125 (79%), Positives = 113/125 (90%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN SF T+KW+DDVR ERG+DV
Sbjct: 61 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRTSFQNTTKWVDDVRGERGNDV 120
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKRQV+TEEGE+KAKE VMFIETSAKAG+NVK LF+R+A ALPGM+
Sbjct: 121 IIVLVGNKTDLNDKRQVTTEEGEKKAKEFKVMFIETSAKAGHNVKTLFKRIAQALPGMEG 180
Query: 348 TENKP 352
T N+P
Sbjct: 181 TLNEP 185
>gi|20071543|gb|AAH26915.1| Rab6 protein, partial [Mus musculus]
Length = 184
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 136/183 (74%), Positives = 139/183 (75%), Gaps = 41/183 (22%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR
Sbjct: 1 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 60
Query: 108 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ 167
DSTVAVVVYDITN NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 61 DSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML--------------------- 99
Query: 168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 227
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNV
Sbjct: 100 --------------------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNV 139
Query: 228 KQV 230
KQ+
Sbjct: 140 KQL 142
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 115/128 (89%), Positives = 122/128 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 36 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 95
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 96 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 155
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 156 TQDRSRED 163
>gi|116875763|ref|NP_115520.2| ras-related protein Rab-6C [Homo sapiens]
gi|166214970|sp|Q9H0N0.2|RAB6C_HUMAN RecName: Full=Ras-related protein Rab-6C; AltName: Full=Rab6-like
protein WTH3
gi|62822497|gb|AAY15045.1| unknown [Homo sapiens]
gi|119615768|gb|EAW95362.1| RAB6C, member RAS oncogene family [Homo sapiens]
gi|119632105|gb|EAX11700.1| hCG2014445 [Homo sapiens]
Length = 254
Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 142/230 (61%), Positives = 149/230 (64%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSV KTSLIT RF YDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVAKTSLIT-----------------------RFRYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQA IGIDFLSKTMYLED T+ L+LWDTAGQER RSLIP YIRDS AVVVYDITN
Sbjct: 38 FDNTYQAIIGIDFLSKTMYLEDGTIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVII L
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIITL---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGN+TDL+DKRQVS EEGERKAK LNV FIET AKAGYNVKQ+
Sbjct: 124 -------VGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKAGYNVKQL 166
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 103/126 (81%), Positives = 111/126 (88%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
+ L+LWDTAGQER RSLIP YIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDVII
Sbjct: 62 IGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVII 121
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
LVGN+TDL+DKRQVS EEGERKAK LNV FIET AKAGYNVKQLFRRVAAALPGM+ST+
Sbjct: 122 TLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKAGYNVKQLFRRVAAALPGMESTQ 181
Query: 350 NKPPED 355
+ ED
Sbjct: 182 DGSRED 187
>gi|449284060|gb|EMC90642.1| Ras-related protein Rab-6A, partial [Columba livia]
Length = 187
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 136/185 (73%), Positives = 139/185 (75%), Gaps = 41/185 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYI
Sbjct: 1 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYI 60
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
RDS AVVVYDITN NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 61 RDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML-------------------- 100
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYN
Sbjct: 101 ---------------------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 139
Query: 227 VKQVR 231
VKQVR
Sbjct: 140 VKQVR 144
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 97/110 (88%), Positives = 102/110 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 37 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 96
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR 337
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+ R
Sbjct: 97 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQVRTR 146
>gi|441621491|ref|XP_003265428.2| PREDICTED: uncharacterized protein LOC100590410 [Nomascus
leucogenys]
Length = 474
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 135/193 (69%), Positives = 143/193 (74%), Gaps = 42/193 (21%)
Query: 38 FDNTYQATI-VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 96
D++ AT VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE
Sbjct: 297 LDSSPSATCSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 356
Query: 97 RFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTH 156
RFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 357 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIML---------- 406
Query: 157 LSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF 216
VGNKTDL+DKRQ++ EEGE++AKEL+VMF
Sbjct: 407 -------------------------------VGNKTDLADKRQITIEEGEQRAKELSVMF 435
Query: 217 IETSAKAGYNVKQ 229
IETSAK GYNVKQ
Sbjct: 436 IETSAKTGYNVKQ 448
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 94/106 (88%), Positives = 101/106 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 343 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 402
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333
IIMLVGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQ
Sbjct: 403 IIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQ 448
>gi|170036653|ref|XP_001846177.1| trypsin [Culex quinquefasciatus]
gi|167879490|gb|EDS42873.1| trypsin [Culex quinquefasciatus]
Length = 283
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 126/128 (98%), Positives = 127/128 (99%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV
Sbjct: 6 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 65
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS
Sbjct: 66 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 125
Query: 348 TENKPPED 355
TENKPPED
Sbjct: 126 TENKPPED 133
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 111/153 (72%), Positives = 112/153 (73%), Gaps = 41/153 (26%)
Query: 78 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE 137
MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE
Sbjct: 1 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE 60
Query: 138 RGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 197
RGSDVIIML VGNKTDLSDK
Sbjct: 61 RGSDVIIML-----------------------------------------VGNKTDLSDK 79
Query: 198 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
RQVSTEEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 80 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 112
>gi|426369724|ref|XP_004051834.1| PREDICTED: ras-related protein Rab-6A, partial [Gorilla gorilla
gorilla]
Length = 158
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 136/182 (74%), Positives = 138/182 (75%), Gaps = 41/182 (22%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR
Sbjct: 1 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 60
Query: 108 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ 167
DSTVAVVVYDITN NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 61 DSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML--------------------- 99
Query: 168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 227
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNV
Sbjct: 100 --------------------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNV 139
Query: 228 KQ 229
KQ
Sbjct: 140 KQ 141
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 99/106 (93%), Positives = 102/106 (96%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 36 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 95
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ
Sbjct: 96 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQ 141
>gi|410971408|ref|XP_003992161.1| PREDICTED: uncharacterized protein LOC101087341 [Felis catus]
Length = 832
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 132/184 (71%), Positives = 139/184 (75%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI
Sbjct: 648 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 707
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
RDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 708 RDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIML-------------------- 747
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
VGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYN
Sbjct: 748 ---------------------VGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYN 786
Query: 227 VKQV 230
VKQ+
Sbjct: 787 VKQL 790
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 106/124 (85%), Positives = 117/124 (94%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 684 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 743
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQLFRRVA+ALPGM++
Sbjct: 744 IIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMEN 803
Query: 348 TENK 351
+ K
Sbjct: 804 VQEK 807
>gi|296217099|ref|XP_002754841.1| PREDICTED: ras-related protein Rab-6A [Callithrix jacchus]
Length = 198
Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 134/184 (72%), Positives = 138/184 (75%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYI
Sbjct: 14 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYI 73
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
RDS AVVVYDITN NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 74 RDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML-------------------- 113
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYN
Sbjct: 114 ---------------------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 152
Query: 227 VKQV 230
VKQ+
Sbjct: 153 VKQL 156
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 112/128 (87%), Positives = 120/128 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 50 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 109
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 110 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 169
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 170 TQDRSRED 177
>gi|354499457|ref|XP_003511825.1| PREDICTED: ras-related protein Rab-6A-like [Cricetulus griseus]
Length = 188
Score = 260 bits (665), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 134/184 (72%), Positives = 138/184 (75%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYI
Sbjct: 4 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYI 63
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
RDS AVVVYDITN NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 64 RDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML-------------------- 103
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYN
Sbjct: 104 ---------------------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 142
Query: 227 VKQV 230
VKQ+
Sbjct: 143 VKQL 146
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 112/128 (87%), Positives = 120/128 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 40 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 99
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 100 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 159
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 160 TQDRSRED 167
>gi|338727025|ref|XP_001496149.3| PREDICTED: ras-related protein Rab-6A-like [Equus caballus]
Length = 187
Score = 260 bits (665), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 134/184 (72%), Positives = 138/184 (75%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYI
Sbjct: 3 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYI 62
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
RDS AVVVYDITN NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 63 RDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML-------------------- 102
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYN
Sbjct: 103 ---------------------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 141
Query: 227 VKQV 230
VKQ+
Sbjct: 142 VKQL 145
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 112/128 (87%), Positives = 120/128 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 39 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 98
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 99 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 158
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 159 TQDRSRED 166
>gi|348555281|ref|XP_003463452.1| PREDICTED: ras-related protein Rab-6A-like [Cavia porcellus]
Length = 214
Score = 260 bits (665), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 134/184 (72%), Positives = 138/184 (75%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYI
Sbjct: 30 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYI 89
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
RDS AVVVYDITN NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 90 RDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML-------------------- 129
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYN
Sbjct: 130 ---------------------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 168
Query: 227 VKQV 230
VKQ+
Sbjct: 169 VKQL 172
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 112/128 (87%), Positives = 120/128 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 66 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 125
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 126 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 185
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 186 TQDRSRED 193
>gi|326671399|ref|XP_003199429.1| PREDICTED: ras-related protein Rab-6A-like [Danio rerio]
Length = 192
Score = 260 bits (664), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 134/184 (72%), Positives = 138/184 (75%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYI
Sbjct: 8 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYI 67
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
RDS AVVVYDITN NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 68 RDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML-------------------- 107
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYN
Sbjct: 108 ---------------------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 146
Query: 227 VKQV 230
VKQ+
Sbjct: 147 VKQL 150
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 113/128 (88%), Positives = 120/128 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 44 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 103
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 104 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 163
Query: 348 TENKPPED 355
T++K ED
Sbjct: 164 TQDKSRED 171
>gi|345571504|gb|EGX54318.1| hypothetical protein AOL_s00004g351 [Arthrobotrys oligospora ATCC
24927]
Length = 211
Score = 260 bits (664), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 140/227 (61%), Positives = 152/227 (66%), Gaps = 64/227 (28%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
S++ + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 5 SNAASYSNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 41
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DN YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN
Sbjct: 42 DNMYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNR 101
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF TSKW+DDVR ERG+DVII+L
Sbjct: 102 QSFLNTSKWVDDVRGERGNDVIIVL----------------------------------- 126
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDL+DKRQV+TEEGE+KAKE VMFIETSAKAG+NVK
Sbjct: 127 ------VGNKTDLNDKRQVTTEEGEKKAKEFKVMFIETSAKAGHNVK 167
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 97/119 (81%), Positives = 109/119 (91%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN SF TSKW+DDVR ERG+DV
Sbjct: 63 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFLNTSKWVDDVRGERGNDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II+LVGNKTDL+DKRQV+TEEGE+KAKE VMFIETSAKAG+NVK LF+R+A ALPGM+
Sbjct: 123 IIVLVGNKTDLNDKRQVTTEEGEKKAKEFKVMFIETSAKAGHNVKTLFKRIAQALPGME 181
>gi|23820936|gb|AAN39685.1|AF309646_1 Rab6-like protein WTH3 [Homo sapiens]
gi|12052973|emb|CAB66661.1| hypothetical protein [Homo sapiens]
gi|49065364|emb|CAG38500.1| RAB6C [Homo sapiens]
gi|111306488|gb|AAI21000.1| RAB6C, member RAS oncogene family [Homo sapiens]
gi|117644696|emb|CAL37813.1| hypothetical protein [synthetic construct]
gi|117645978|emb|CAL38456.1| hypothetical protein [synthetic construct]
gi|117646278|emb|CAL38606.1| hypothetical protein [synthetic construct]
gi|117646424|emb|CAL38679.1| hypothetical protein [synthetic construct]
gi|208965414|dbj|BAG72721.1| RAB6C, member RAS oncogene family [synthetic construct]
Length = 254
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 141/230 (61%), Positives = 148/230 (64%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSV KTSLIT RF YDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVAKTSLIT-----------------------RFRYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQA IGIDFLSKTMYLED T+ L+LWDTAGQER RSLIP YIRDS AVVVYDITN
Sbjct: 38 FDNTYQAIIGIDFLSKTMYLEDGTIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVII L
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIITL---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGN+TDL+DKRQVS EEGERKAK LNV FIET AK GYNVKQ+
Sbjct: 124 -------VGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKTGYNVKQL 166
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 102/126 (80%), Positives = 110/126 (87%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
+ L+LWDTAGQER RSLIP YIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDVII
Sbjct: 62 IGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVII 121
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
LVGN+TDL+DKRQVS EEGERKAK LNV FIET AK GYNVKQLFRRVAAALPGM+ST+
Sbjct: 122 TLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKTGYNVKQLFRRVAAALPGMESTQ 181
Query: 350 NKPPED 355
+ ED
Sbjct: 182 DGSRED 187
>gi|117938299|ref|NP_001071105.1| RAB6C-like [Homo sapiens]
gi|62702327|gb|AAX93251.1| unknown [Homo sapiens]
gi|63145796|gb|AAY33873.1| WTH3DI [Homo sapiens]
gi|112292965|dbj|BAF02860.1| Rab6C [Homo sapiens]
gi|151555103|gb|AAI48668.1| RAB6C-like [synthetic construct]
gi|157169764|gb|AAI53206.1| RAB6C-like [synthetic construct]
Length = 254
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 142/230 (61%), Positives = 148/230 (64%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSV KTSLIT RF YDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVAKTSLIT-----------------------RFRYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQA IGIDFLSKTMYLED T+ L+LWDTAGQER RSLIP YIRDS AVVVYDITN
Sbjct: 38 FDNTYQAIIGIDFLSKTMYLEDGTIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTE GSDVII L
Sbjct: 98 VNSFQQTTKWIDDVRTEGGSDVIITL---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAK LNV FIET AKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKGLNVTFIETRAKAGYNVKQL 166
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 103/126 (81%), Positives = 110/126 (87%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
+ L+LWDTAGQER RSLIP YIRDS AVVVYDITN NSF QT+KWIDDVRTE GSDVII
Sbjct: 62 IGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTEGGSDVII 121
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
LVGNKTDL+DKRQVS EEGERKAK LNV FIET AKAGYNVKQLFRRVAAALPGM+ST+
Sbjct: 122 TLVGNKTDLADKRQVSIEEGERKAKGLNVTFIETRAKAGYNVKQLFRRVAAALPGMESTQ 181
Query: 350 NKPPED 355
+ ED
Sbjct: 182 DGSRED 187
>gi|327289792|ref|XP_003229608.1| PREDICTED: ras-related protein Rab-6A-like, partial [Anolis
carolinensis]
Length = 167
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 134/184 (72%), Positives = 138/184 (75%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYI
Sbjct: 4 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYI 63
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
RDS AVVVYDITN NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 64 RDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML-------------------- 103
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYN
Sbjct: 104 ---------------------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 142
Query: 227 VKQV 230
VKQ+
Sbjct: 143 VKQL 146
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 113/128 (88%), Positives = 120/128 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 40 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 99
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 100 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 159
Query: 348 TENKPPED 355
T++K ED
Sbjct: 160 TQDKSRED 167
>gi|326924238|ref|XP_003208337.1| PREDICTED: ras-related protein Rab-6A-like [Meleagris gallopavo]
Length = 200
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 134/195 (68%), Positives = 143/195 (73%), Gaps = 41/195 (21%)
Query: 36 DSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 95
D N + IVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQ
Sbjct: 5 DKPSNFASSFIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQ 64
Query: 96 ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFT 155
ERFRSLIPSYIRDS VAV+V+DITN NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 65 ERFRSLIPSYIRDSAVAVIVFDITNLNSFQQTSKWIDDVRTERGSDVIIML--------- 115
Query: 156 HLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM 215
VGNKTDL+DKRQVS EEGERKA+ELN+M
Sbjct: 116 --------------------------------VGNKTDLADKRQVSIEEGERKARELNMM 143
Query: 216 FIETSAKAGYNVKQV 230
+IETSAKAGYNVKQ+
Sbjct: 144 YIETSAKAGYNVKQL 158
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 111/128 (86%), Positives = 119/128 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS VAV+V+DITN NSF QTSKWIDDVRTERGSDV
Sbjct: 52 RTIRLQLWDTAGQERFRSLIPSYIRDSAVAVIVFDITNLNSFQQTSKWIDDVRTERGSDV 111
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKA+ELN+M+IETSAKAGYNVKQLFRRVAAALPGMDS
Sbjct: 112 IIMLVGNKTDLADKRQVSIEEGERKARELNMMYIETSAKAGYNVKQLFRRVAAALPGMDS 171
Query: 348 TENKPPED 355
T K ED
Sbjct: 172 TPEKSKED 179
>gi|6808528|gb|AAF28422.1|AF124200_1 Rab6-like protein [Homo sapiens]
Length = 175
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 141/230 (61%), Positives = 148/230 (64%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSV KTSLIT RF YDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVAKTSLIT-----------------------RFRYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQA IGIDFLSKTMYLED T+ L+LWDTAGQER RSLIP YIRDS AVVVYDITN
Sbjct: 38 FDNTYQAIIGIDFLSKTMYLEDGTIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVII L
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIITL---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGN+TDL+DKRQVS EEGERKAK LNV FIET AK GYNVKQ+
Sbjct: 124 -------VGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKTGYNVKQL 166
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 96/114 (84%), Positives = 101/114 (88%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
+ L+LWDTAGQER RSLIP YIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDVII
Sbjct: 62 IGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVII 121
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
LVGN+TDL+DKRQVS EEGERKAK LNV FIET AK GYNVKQLFRRVAAALP
Sbjct: 122 TLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKTGYNVKQLFRRVAAALP 175
>gi|148684518|gb|EDL16465.1| RAB6, member RAS oncogene family, isoform CRA_d [Mus musculus]
Length = 179
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 133/184 (72%), Positives = 138/184 (75%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
+GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYI
Sbjct: 1 LGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYI 60
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
RDS AVVVYDITN NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 61 RDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML-------------------- 100
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYN
Sbjct: 101 ---------------------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 139
Query: 227 VKQV 230
VKQ+
Sbjct: 140 VKQL 143
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 112/128 (87%), Positives = 120/128 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 37 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 96
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 97 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 156
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 157 TQDRSRED 164
>gi|256085306|ref|XP_002578863.1| rab6 [Schistosoma mansoni]
gi|350645823|emb|CCD59585.1| rab6, putative [Schistosoma mansoni]
Length = 203
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 138/224 (61%), Positives = 148/224 (66%), Gaps = 64/224 (28%)
Query: 5 GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT 64
DF NPL+KFKLVFLGEQSVGKTSL ITRFMY++FDN
Sbjct: 2 ADFNNPLQKFKLVFLGEQSVGKTSL-----------------------ITRFMYETFDNL 38
Query: 65 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 124
YQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS+ AVVVYDI NA SF
Sbjct: 39 YQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSAAVVVYDICNAGSF 98
Query: 125 HQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVI 184
HQ SKW+DDVR ERG DVII+L
Sbjct: 99 HQASKWVDDVRNERGGDVIIIL-------------------------------------- 120
Query: 185 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDLSDKR+V+TEEGE AK+L VMFIETSAKAGYNVK
Sbjct: 121 ---VGNKTDLSDKRKVTTEEGELLAKKLEVMFIETSAKAGYNVK 161
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 93/115 (80%), Positives = 102/115 (88%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS+ AVVVYDI NA SFHQ SKW+DDVR ERG DV
Sbjct: 57 RTIRLQLWDTAGQERFRSLIPSYIRDSSAAVVVYDICNAGSFHQASKWVDDVRNERGGDV 116
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
II+LVGNKTDLSDKR+V+TEEGE AK+L VMFIETSAKAGYNVK LFRR+A L
Sbjct: 117 IIILVGNKTDLSDKRKVTTEEGELLAKKLEVMFIETSAKAGYNVKVLFRRIATEL 171
>gi|432108419|gb|ELK33169.1| Ras-related protein Rab-6B [Myotis davidii]
Length = 207
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 131/184 (71%), Positives = 139/184 (75%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
+GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI
Sbjct: 18 LGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 77
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
RDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 78 RDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIML-------------------- 117
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
VGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYN
Sbjct: 118 ---------------------VGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYN 156
Query: 227 VKQV 230
VKQ+
Sbjct: 157 VKQL 160
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 106/124 (85%), Positives = 117/124 (94%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 54 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 113
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQLFRRVA+ALPGM++
Sbjct: 114 IIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMEN 173
Query: 348 TENK 351
+ K
Sbjct: 174 VQEK 177
>gi|355560026|gb|EHH16754.1| hypothetical protein EGK_12093, partial [Macaca mulatta]
gi|355747048|gb|EHH51662.1| hypothetical protein EGM_11085, partial [Macaca fascicularis]
Length = 186
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 132/184 (71%), Positives = 139/184 (75%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI
Sbjct: 2 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 61
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
RDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 62 RDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIML-------------------- 101
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
VGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYN
Sbjct: 102 ---------------------VGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYN 140
Query: 227 VKQV 230
VKQ+
Sbjct: 141 VKQL 144
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 107/127 (84%), Positives = 118/127 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 38 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 97
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQLFRRVA+ALPGM++
Sbjct: 98 IIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMEN 157
Query: 348 TENKPPE 354
+ K E
Sbjct: 158 VQEKSKE 164
>gi|297672011|ref|XP_002814109.1| PREDICTED: ras-related protein Rab-6B isoform 2 [Pongo abelii]
gi|332818086|ref|XP_001147918.2| PREDICTED: ras-related protein Rab-6B [Pan troglodytes]
gi|397503905|ref|XP_003822555.1| PREDICTED: ras-related protein Rab-6B isoform 2 [Pan paniscus]
gi|402861533|ref|XP_003895144.1| PREDICTED: ras-related protein Rab-6B isoform 2 [Papio anubis]
gi|426342172|ref|XP_004036387.1| PREDICTED: ras-related protein Rab-6B isoform 2 [Gorilla gorilla
gorilla]
gi|221040792|dbj|BAH12073.1| unnamed protein product [Homo sapiens]
Length = 195
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 132/185 (71%), Positives = 140/185 (75%), Gaps = 41/185 (22%)
Query: 46 IVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY 105
+VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY
Sbjct: 10 LVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY 69
Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
IRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 70 IRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIML------------------- 110
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 225
VGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GY
Sbjct: 111 ----------------------VGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGY 148
Query: 226 NVKQV 230
NVKQ+
Sbjct: 149 NVKQL 153
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 107/127 (84%), Positives = 118/127 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 47 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 106
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQLFRRVA+ALPGM++
Sbjct: 107 IIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMEN 166
Query: 348 TENKPPE 354
+ K E
Sbjct: 167 VQEKSKE 173
>gi|403265828|ref|XP_003925114.1| PREDICTED: ras-related protein Rab-6B isoform 2 [Saimiri
boliviensis boliviensis]
Length = 195
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 132/185 (71%), Positives = 140/185 (75%), Gaps = 41/185 (22%)
Query: 46 IVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY 105
+VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY
Sbjct: 10 LVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY 69
Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
IRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 70 IRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIML------------------- 110
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 225
VGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GY
Sbjct: 111 ----------------------VGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGY 148
Query: 226 NVKQV 230
NVKQ+
Sbjct: 149 NVKQL 153
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 107/127 (84%), Positives = 118/127 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 47 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 106
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQLFRRVA+ALPGM++
Sbjct: 107 IIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMEN 166
Query: 348 TENKPPE 354
+ K E
Sbjct: 167 VQEKSKE 173
>gi|380485929|emb|CCF39041.1| Ras-like protein Rab-6A [Colletotrichum higginsianum]
Length = 209
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 134/226 (59%), Positives = 151/226 (66%), Gaps = 64/226 (28%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
+SG + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSFD
Sbjct: 5 ASGSYNNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFD 41
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
N YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 42 NMYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAK 101
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF T KWIDDVR ERG+DVII+L
Sbjct: 102 SFQNTKKWIDDVRAERGNDVIIVL------------------------------------ 125
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDL+DKR+V+T++GE +AK+ N+MF+ETSAK G+NVK
Sbjct: 126 -----VGNKTDLNDKREVTTQQGEEEAKKNNLMFVETSAKLGHNVK 166
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 90/122 (73%), Positives = 110/122 (90%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DV
Sbjct: 62 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTKKWIDDVRAERGNDV 121
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKR+V+T++GE +AK+ N+MF+ETSAK G+NVK LF+R+A ALPGM+
Sbjct: 122 IIVLVGNKTDLNDKREVTTQQGEEEAKKNNLMFVETSAKLGHNVKTLFKRIAQALPGMEG 181
Query: 348 TE 349
++
Sbjct: 182 SD 183
>gi|259483929|tpe|CBF79720.1| TPA: hypothetical protein similar to small GTP-binding protein
(Eurofung) [Aspergillus nidulans FGSC A4]
Length = 184
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 137/229 (59%), Positives = 153/229 (66%), Gaps = 64/229 (27%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
S++G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 5 STAGSYSNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 41
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 42 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNA 101
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF T KWIDDVR ERG+DVII+L
Sbjct: 102 KSFQNTRKWIDDVRGERGNDVIIVL----------------------------------- 126
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKR+V+T +GE +AK+ +MFIETSAK G+NVKQ+
Sbjct: 127 ------VGNKTDLSDKREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQL 169
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/122 (74%), Positives = 107/122 (87%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DV
Sbjct: 63 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRGERGNDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDLSDKR+V+T +GE +AK+ +MFIETSAK G+NVKQLFRR+A ALP ++
Sbjct: 123 IIVLVGNKTDLSDKREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQLFRRIAQALPDLND 182
Query: 348 TE 349
+
Sbjct: 183 ND 184
>gi|392864275|gb|EAS34901.2| small GTP-binding protein [Coccidioides immitis RS]
Length = 209
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 136/229 (59%), Positives = 152/229 (66%), Gaps = 64/229 (27%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
S+ G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 5 SAVGSYSNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 41
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 42 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNA 101
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF T KW+DDVR ERG+DVII+L
Sbjct: 102 KSFQNTRKWVDDVRGERGNDVIIVL----------------------------------- 126
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK GYNVKQ+
Sbjct: 127 ------VGNKTDLNDKREVTTAQGEEEAKKNGLMFIETSAKVGYNVKQL 169
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/120 (76%), Positives = 107/120 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KW+DDVR ERG+DV
Sbjct: 63 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWVDDVRGERGNDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK GYNVKQLFRR+A ALPGM+
Sbjct: 123 IIVLVGNKTDLNDKREVTTAQGEEEAKKNGLMFIETSAKVGYNVKQLFRRIAQALPGMEG 182
>gi|310795170|gb|EFQ30631.1| Ras family protein [Glomerella graminicola M1.001]
Length = 209
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 134/226 (59%), Positives = 151/226 (66%), Gaps = 64/226 (28%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
+SG + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSFD
Sbjct: 5 ASGSYNNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFD 41
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
N YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 42 NMYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAK 101
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF T KWIDDVR ERG+DVII+L
Sbjct: 102 SFQNTKKWIDDVRAERGNDVIIVL------------------------------------ 125
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDL+DKR+V+T++GE +AK+ N+MF+ETSAK G+NVK
Sbjct: 126 -----VGNKTDLNDKREVTTQQGEEEAKKNNLMFVETSAKLGHNVK 166
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 91/122 (74%), Positives = 110/122 (90%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DV
Sbjct: 62 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTKKWIDDVRAERGNDV 121
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKR+V+T++GE +AK+ N+MF+ETSAK G+NVK LF+R+A ALPGM+
Sbjct: 122 IIVLVGNKTDLNDKREVTTQQGEEEAKKNNLMFVETSAKLGHNVKTLFKRIAQALPGMEG 181
Query: 348 TE 349
T+
Sbjct: 182 TD 183
>gi|71024043|ref|XP_762251.1| hypothetical protein UM06104.1 [Ustilago maydis 521]
gi|46101753|gb|EAK86986.1| hypothetical protein UM06104.1 [Ustilago maydis 521]
Length = 219
Score = 254 bits (649), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 137/218 (62%), Positives = 147/218 (67%), Gaps = 64/218 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+RKFKLVFLGEQSVGKTSL ITRFMYD+FDNTYQATIG
Sbjct: 1 MRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDTFDNTYQATIG 37
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN SF TSKW
Sbjct: 38 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFQNTSKW 97
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
+DDVR ERG+DVII+L VGN
Sbjct: 98 VDDVRAERGNDVIIVL-----------------------------------------VGN 116
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
KTDLSDKRQV+TEE E+KA+E NVMFIETSAKAG+NVK
Sbjct: 117 KTDLSDKRQVTTEEAEKKAQEFNVMFIETSAKAGHNVK 154
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 97/119 (81%), Positives = 109/119 (91%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN SF TSKW+DDVR ERG+DV
Sbjct: 50 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFQNTSKWVDDVRAERGNDV 109
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II+LVGNKTDLSDKRQV+TEE E+KA+E NVMFIETSAKAG+NVK LF+++A ALPGMD
Sbjct: 110 IIVLVGNKTDLSDKRQVTTEEAEKKAQEFNVMFIETSAKAGHNVKVLFKKIAQALPGMD 168
>gi|342873488|gb|EGU75655.1| hypothetical protein FOXB_13843 [Fusarium oxysporum Fo5176]
Length = 208
Score = 253 bits (646), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 133/228 (58%), Positives = 151/228 (66%), Gaps = 64/228 (28%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
+ G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSFD
Sbjct: 4 AGGSYNNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFD 40
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
N YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 41 NMYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAK 100
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF T KWIDDVR ERG+DVII+L
Sbjct: 101 SFQNTKKWIDDVRAERGNDVIIVL------------------------------------ 124
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR+V+T++GE +AK+ N+MF+ETSAK G+NVK +
Sbjct: 125 -----VGNKTDLNDKREVTTQQGEEEAKKNNLMFVETSAKLGHNVKNL 167
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/120 (75%), Positives = 109/120 (90%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DVII
Sbjct: 63 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTKKWIDDVRAERGNDVII 122
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
+LVGNKTDL+DKR+V+T++GE +AK+ N+MF+ETSAK G+NVK LF+R+A ALPGM+ ++
Sbjct: 123 VLVGNKTDLNDKREVTTQQGEEEAKKNNLMFVETSAKLGHNVKNLFKRIAQALPGMEGSD 182
>gi|255953207|ref|XP_002567356.1| Pc21g02920 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589067|emb|CAP95189.1| Pc21g02920 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 208
Score = 253 bits (646), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 136/229 (59%), Positives = 152/229 (66%), Gaps = 64/229 (27%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
+S G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 4 TSVGSYSNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 40
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 41 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNA 100
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF T KWIDDVR ERG+DVII+L
Sbjct: 101 KSFQNTRKWIDDVRGERGNDVIIVL----------------------------------- 125
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK G+NVKQ+
Sbjct: 126 ------VGNKTDLNDKREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQL 168
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 92/119 (77%), Positives = 107/119 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DV
Sbjct: 62 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRGERGNDV 121
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II+LVGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK G+NVKQLFRR+A ALPGM+
Sbjct: 122 IIVLVGNKTDLNDKREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQLFRRIAQALPGME 180
>gi|242818595|ref|XP_002487149.1| RAS small monomeric GTPase Rab6, putative [Talaromyces stipitatus
ATCC 10500]
gi|218713614|gb|EED13038.1| RAS small monomeric GTPase Rab6, putative [Talaromyces stipitatus
ATCC 10500]
Length = 209
Score = 253 bits (646), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 134/229 (58%), Positives = 153/229 (66%), Gaps = 64/229 (27%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
+++G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 5 TAAGSYSNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 41
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 42 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNA 101
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF T KW+DDVR ERG+DVII+L
Sbjct: 102 KSFQNTKKWVDDVRGERGNDVIIVL----------------------------------- 126
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK G+NVKQ+
Sbjct: 127 ------VGNKTDLNDKREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQL 169
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 91/119 (76%), Positives = 107/119 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KW+DDVR ERG+DV
Sbjct: 63 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTKKWVDDVRGERGNDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II+LVGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK G+NVKQLFRR+A ALPGM+
Sbjct: 123 IIVLVGNKTDLNDKREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQLFRRIAQALPGME 181
>gi|169762832|ref|XP_001727316.1| Ras-related protein Rab-6A [Aspergillus oryzae RIB40]
gi|238488653|ref|XP_002375564.1| RAS small monomeric GTPase Rab6, putative [Aspergillus flavus
NRRL3357]
gi|83770344|dbj|BAE60477.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220697952|gb|EED54292.1| RAS small monomeric GTPase Rab6, putative [Aspergillus flavus
NRRL3357]
gi|391866828|gb|EIT76096.1| GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Aspergillus
oryzae 3.042]
Length = 209
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 136/229 (59%), Positives = 152/229 (66%), Gaps = 64/229 (27%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
S+ G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 5 SAVGSYSNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 41
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 42 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNA 101
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF T KWIDDVR ERG+DVII+L
Sbjct: 102 KSFQNTRKWIDDVRGERGNDVIIVL----------------------------------- 126
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK G+NVKQ+
Sbjct: 127 ------VGNKTDLNDKREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQL 169
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 92/119 (77%), Positives = 107/119 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DV
Sbjct: 63 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRGERGNDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II+LVGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK G+NVKQLFRR+A ALPGM+
Sbjct: 123 IIVLVGNKTDLNDKREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQLFRRIAQALPGME 181
>gi|425767204|gb|EKV05779.1| hypothetical protein PDIP_81350 [Penicillium digitatum Pd1]
gi|425769088|gb|EKV07595.1| hypothetical protein PDIG_72080 [Penicillium digitatum PHI26]
Length = 209
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 136/229 (59%), Positives = 151/229 (65%), Gaps = 64/229 (27%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
S G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 5 SGVGSYSNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 41
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 42 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNA 101
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF T KWIDDVR ERG+DVII+L
Sbjct: 102 KSFQNTRKWIDDVRGERGNDVIIVL----------------------------------- 126
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK G+NVKQ+
Sbjct: 127 ------VGNKTDLNDKREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQL 169
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 92/119 (77%), Positives = 107/119 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DV
Sbjct: 63 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRGERGNDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II+LVGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK G+NVKQLFRR+A ALPGM+
Sbjct: 123 IIVLVGNKTDLNDKREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQLFRRIAQALPGME 181
>gi|71002422|ref|XP_755892.1| RAS small monomeric GTPase Rab6 [Aspergillus fumigatus Af293]
gi|119481981|ref|XP_001261019.1| rab6 [Neosartorya fischeri NRRL 181]
gi|66853530|gb|EAL93854.1| RAS small monomeric GTPase Rab6, putative [Aspergillus fumigatus
Af293]
gi|119409173|gb|EAW19122.1| rab6 [Neosartorya fischeri NRRL 181]
gi|159129947|gb|EDP55061.1| RAS small monomeric GTPase Rab6, putative [Aspergillus fumigatus
A1163]
Length = 207
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 138/232 (59%), Positives = 154/232 (66%), Gaps = 66/232 (28%)
Query: 1 MSSSG--DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMY 58
M+SSG + NPL+KFKLVFLGEQSVGKTSL ITRFMY
Sbjct: 1 MASSGVGSYSNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMY 37
Query: 59 DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 118
DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI
Sbjct: 38 DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDI 97
Query: 119 TNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTE 178
+NA SF T KWIDDVR ERG+DVII+L
Sbjct: 98 SNAKSFQNTRKWIDDVRGERGNDVIIVL-------------------------------- 125
Query: 179 RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK G+NVKQ+
Sbjct: 126 ---------VGNKTDLNDKREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQL 168
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 110/127 (86%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DV
Sbjct: 62 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRGERGNDV 121
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK G+NVKQLFRR+A ALPGM+
Sbjct: 122 IIVLVGNKTDLNDKREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQLFRRIAQALPGMEG 181
Query: 348 TENKPPE 354
N+ +
Sbjct: 182 EANRESQ 188
>gi|258573301|ref|XP_002540832.1| GTP-binding protein ryh1 [Uncinocarpus reesii 1704]
gi|237901098|gb|EEP75499.1| GTP-binding protein ryh1 [Uncinocarpus reesii 1704]
Length = 210
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 135/229 (58%), Positives = 152/229 (66%), Gaps = 64/229 (27%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
S+ G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 6 SAVGSYSNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 42
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DNTYQATIGIDFLSKTMYL+DRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 43 DNTYQATIGIDFLSKTMYLDDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNA 102
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF T KW+DDVR ERG+DVII+L
Sbjct: 103 KSFQNTRKWVDDVRGERGNDVIIVL----------------------------------- 127
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK GYNVKQ+
Sbjct: 128 ------VGNKTDLNDKREVTTAQGEEEAKKNGLMFIETSAKVGYNVKQL 170
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 92/120 (76%), Positives = 107/120 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KW+DDVR ERG+DV
Sbjct: 64 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWVDDVRGERGNDV 123
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK GYNVKQLFRR+A ALPGM+
Sbjct: 124 IIVLVGNKTDLNDKREVTTAQGEEEAKKNGLMFIETSAKVGYNVKQLFRRIANALPGMEG 183
>gi|78057535|gb|ABB17267.1| secretion related GTPase C [Aspergillus niger]
Length = 210
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 136/229 (59%), Positives = 151/229 (65%), Gaps = 64/229 (27%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
S G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 5 SGVGSYSNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 41
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 42 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNA 101
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF T KWIDDVR ERG+DVII+L
Sbjct: 102 KSFQNTRKWIDDVRGERGNDVIIVL----------------------------------- 126
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK G+NVKQ+
Sbjct: 127 ------VGNKTDLNDKREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQL 169
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/124 (75%), Positives = 109/124 (87%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DV
Sbjct: 63 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRGERGNDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK G+NVKQLFRR+A ALPGM+
Sbjct: 123 IIVLVGNKTDLNDKREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQLFRRIAQALPGMEG 182
Query: 348 TENK 351
N+
Sbjct: 183 EANR 186
>gi|145251179|ref|XP_001397103.1| Ras-related protein Rab-6A [Aspergillus niger CBS 513.88]
gi|134082633|emb|CAK42527.1| unnamed protein product [Aspergillus niger]
gi|350636440|gb|EHA24800.1| hypothetical protein ASPNIDRAFT_40721 [Aspergillus niger ATCC 1015]
gi|358373872|dbj|GAA90468.1| secretion related GTPase C [Aspergillus kawachii IFO 4308]
Length = 209
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 136/229 (59%), Positives = 151/229 (65%), Gaps = 64/229 (27%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
S G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 5 SGVGSYSNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 41
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 42 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNA 101
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF T KWIDDVR ERG+DVII+L
Sbjct: 102 KSFQNTRKWIDDVRGERGNDVIIVL----------------------------------- 126
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK G+NVKQ+
Sbjct: 127 ------VGNKTDLNDKREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQL 169
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/124 (75%), Positives = 109/124 (87%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DV
Sbjct: 63 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRGERGNDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK G+NVKQLFRR+A ALPGM+
Sbjct: 123 IIVLVGNKTDLNDKREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQLFRRIAQALPGMEG 182
Query: 348 TENK 351
N+
Sbjct: 183 EANR 186
>gi|367053789|ref|XP_003657273.1| hypothetical protein THITE_2152148 [Thielavia terrestris NRRL 8126]
gi|347004538|gb|AEO70937.1| hypothetical protein THITE_2152148 [Thielavia terrestris NRRL 8126]
Length = 210
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 133/227 (58%), Positives = 150/227 (66%), Gaps = 64/227 (28%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
++ G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 5 AAGGSYNNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 41
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DN YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 42 DNMYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNA 101
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF T KWIDDVR ERG+DVII+L
Sbjct: 102 KSFQNTRKWIDDVRAERGNDVIIVL----------------------------------- 126
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDL+DKR+V+T++GE +AK N+MF+ETSAK G+NVK
Sbjct: 127 ------VGNKTDLNDKREVTTQQGEEEAKRNNLMFVETSAKLGHNVK 167
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 91/122 (74%), Positives = 109/122 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DV
Sbjct: 63 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRAERGNDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKR+V+T++GE +AK N+MF+ETSAK G+NVK LF+R+A ALPGM+
Sbjct: 123 IIVLVGNKTDLNDKREVTTQQGEEEAKRNNLMFVETSAKLGHNVKTLFKRIAQALPGMEG 182
Query: 348 TE 349
T+
Sbjct: 183 TD 184
>gi|408398703|gb|EKJ77831.1| hypothetical protein FPSE_01924 [Fusarium pseudograminearum CS3096]
Length = 208
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 132/228 (57%), Positives = 151/228 (66%), Gaps = 64/228 (28%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
+ G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSFD
Sbjct: 4 AGGSYNNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFD 40
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
N YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 41 NMYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAK 100
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF T KWIDDVR ERG+DVII+L
Sbjct: 101 SFQNTKKWIDDVRAERGNDVIIVL------------------------------------ 124
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL++KR+V+T++GE +AK+ N+MF+ETSAK G+NVK +
Sbjct: 125 -----VGNKTDLNEKREVTTQQGEEEAKKNNLMFVETSAKLGHNVKNL 167
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 89/120 (74%), Positives = 109/120 (90%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DVII
Sbjct: 63 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTKKWIDDVRAERGNDVII 122
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
+LVGNKTDL++KR+V+T++GE +AK+ N+MF+ETSAK G+NVK LF+R+A ALPGM+ ++
Sbjct: 123 VLVGNKTDLNEKREVTTQQGEEEAKKNNLMFVETSAKLGHNVKNLFKRIAQALPGMEGSD 182
>gi|212530474|ref|XP_002145394.1| RAS small monomeric GTPase Rab6, putative [Talaromyces marneffei
ATCC 18224]
gi|210074792|gb|EEA28879.1| RAS small monomeric GTPase Rab6, putative [Talaromyces marneffei
ATCC 18224]
Length = 209
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 134/229 (58%), Positives = 152/229 (66%), Gaps = 64/229 (27%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
++ G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 5 TAVGSYSNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 41
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 42 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNA 101
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF T KW+DDVR ERG+DVII+L
Sbjct: 102 KSFQNTKKWVDDVRGERGNDVIIVL----------------------------------- 126
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK G+NVKQ+
Sbjct: 127 ------VGNKTDLNDKREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQL 169
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/120 (76%), Positives = 107/120 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KW+DDVR ERG+DV
Sbjct: 63 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTKKWVDDVRGERGNDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK G+NVKQLFRR+A ALPGMD
Sbjct: 123 IIVLVGNKTDLNDKREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQLFRRIAQALPGMDG 182
>gi|367032973|ref|XP_003665769.1| hypothetical protein MYCTH_2309779 [Myceliophthora thermophila ATCC
42464]
gi|347013041|gb|AEO60524.1| hypothetical protein MYCTH_2309779 [Myceliophthora thermophila ATCC
42464]
Length = 210
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 133/226 (58%), Positives = 149/226 (65%), Gaps = 64/226 (28%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
+ G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSFD
Sbjct: 6 AGGSYSNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFD 42
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
N YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 43 NMYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAK 102
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF T KWIDDVR ERG+DVII+L
Sbjct: 103 SFQNTRKWIDDVRAERGNDVIIVL------------------------------------ 126
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDL+DKR+V+T++GE +AK N+MF+ETSAK G+NVK
Sbjct: 127 -----VGNKTDLNDKREVTTQQGEEEAKRNNLMFVETSAKLGHNVK 167
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 91/122 (74%), Positives = 109/122 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DV
Sbjct: 63 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRAERGNDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKR+V+T++GE +AK N+MF+ETSAK G+NVK LF+R+A ALPGM+
Sbjct: 123 IIVLVGNKTDLNDKREVTTQQGEEEAKRNNLMFVETSAKLGHNVKTLFKRIAQALPGMEG 182
Query: 348 TE 349
T+
Sbjct: 183 TD 184
>gi|402082888|gb|EJT77906.1| Ras-like protein Rab-6A [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 209
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 132/229 (57%), Positives = 151/229 (65%), Gaps = 64/229 (27%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
+ + + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 4 AGAAGYNNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 40
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DN YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 41 DNMYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNA 100
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF T KWI+DVR ERG+DVII+L
Sbjct: 101 KSFQNTRKWIEDVRAERGNDVIIVL----------------------------------- 125
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQV+T++GE +AK+ N+MF+ETSAK G+NVK +
Sbjct: 126 ------VGNKTDLNDKRQVTTQQGEDEAKKFNLMFVETSAKVGHNVKNL 168
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 92/122 (75%), Positives = 110/122 (90%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWI+DVR ERG+DV
Sbjct: 62 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIEDVRAERGNDV 121
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKRQV+T++GE +AK+ N+MF+ETSAK G+NVK LF+R+A ALPGM+
Sbjct: 122 IIVLVGNKTDLNDKRQVTTQQGEDEAKKFNLMFVETSAKVGHNVKNLFKRIALALPGMEG 181
Query: 348 TE 349
TE
Sbjct: 182 TE 183
>gi|406868593|gb|EKD21630.1| Ras family protein [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 208
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 133/228 (58%), Positives = 151/228 (66%), Gaps = 64/228 (28%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
+ G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSFD
Sbjct: 4 AGGSYNNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFD 40
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
N YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 41 NMYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAK 100
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF T KW+DDVR ERG+DVII+L
Sbjct: 101 SFQNTRKWVDDVRGERGNDVIIVL------------------------------------ 124
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR+V+T++GE +AK+ N+MFIETSAK G+NVK +
Sbjct: 125 -----VGNKTDLNDKREVTTQQGEEEAKKNNLMFIETSAKVGHNVKNL 167
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 92/122 (75%), Positives = 109/122 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KW+DDVR ERG+DV
Sbjct: 61 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWVDDVRGERGNDV 120
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKR+V+T++GE +AK+ N+MFIETSAK G+NVK LF+R+A ALPGMD
Sbjct: 121 IIVLVGNKTDLNDKREVTTQQGEEEAKKNNLMFIETSAKVGHNVKNLFKRIAQALPGMDG 180
Query: 348 TE 349
E
Sbjct: 181 AE 182
>gi|403175392|ref|XP_003334220.2| rab family protein [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375171582|gb|EFP89801.2| rab family protein [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 310
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 135/218 (61%), Positives = 147/218 (67%), Gaps = 64/218 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L+KFKLVFLGEQSVGKTSL ITRFMYD+FDNTYQATIG
Sbjct: 113 LKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDTFDNTYQATIG 149
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD+TN SF TS+W
Sbjct: 150 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVTNRTSFINTSRW 209
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
+DDVR ERG+DVII+L VGN
Sbjct: 210 VDDVRAERGNDVIIVL-----------------------------------------VGN 228
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
KTDL D+RQVSTEE ERK+KEL+VMFIETSAKAG+NVK
Sbjct: 229 KTDLGDRRQVSTEEAERKSKELDVMFIETSAKAGHNVK 266
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 96/120 (80%), Positives = 110/120 (91%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD+TN SF TS+W+DDVR ERG+DV
Sbjct: 162 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVTNRTSFINTSRWVDDVRAERGNDV 221
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL D+RQVSTEE ERK+KEL+VMFIETSAKAG+NVK LF+++A ALPGMDS
Sbjct: 222 IIVLVGNKTDLGDRRQVSTEEAERKSKELDVMFIETSAKAGHNVKTLFKKIAQALPGMDS 281
>gi|171683621|ref|XP_001906753.1| hypothetical protein [Podospora anserina S mat+]
gi|170941770|emb|CAP67424.1| unnamed protein product [Podospora anserina S mat+]
Length = 213
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 133/229 (58%), Positives = 151/229 (65%), Gaps = 64/229 (27%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
+ G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 5 GAGGSYNNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 41
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DN YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 42 DNMYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNA 101
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF T KWIDDVR ERG+DVII+L
Sbjct: 102 KSFQNTRKWIDDVRAERGNDVIIVL----------------------------------- 126
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR+V+T +GE +A++ N+MF+ETSAKAG+NVK +
Sbjct: 127 ------VGNKTDLNDKREVTTAQGEEEARKNNLMFVETSAKAGHNVKNL 169
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 89/122 (72%), Positives = 109/122 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DV
Sbjct: 63 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRAERGNDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKR+V+T +GE +A++ N+MF+ETSAKAG+NVK LF+++A ALPGM+
Sbjct: 123 IIVLVGNKTDLNDKREVTTAQGEEEARKNNLMFVETSAKAGHNVKNLFKKIAQALPGMEG 182
Query: 348 TE 349
+
Sbjct: 183 AD 184
>gi|295667515|ref|XP_002794307.1| GTP-binding protein YPT52 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226286413|gb|EEH41979.1| GTP-binding protein YPT52 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226291866|gb|EEH47294.1| GTP-binding protein ypt5 [Paracoccidioides brasiliensis Pb18]
Length = 209
Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 134/229 (58%), Positives = 152/229 (66%), Gaps = 64/229 (27%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
S++G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 5 SATGSYSNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 41
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DN YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 42 DNMYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNA 101
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF T KWIDDVR ERG+DVII+L
Sbjct: 102 KSFQNTRKWIDDVRGERGNDVIIVL----------------------------------- 126
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+D+R+V+T +GE +AK+ +MFIETSAK G+NVKQ+
Sbjct: 127 ------VGNKTDLNDRREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQL 169
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 92/119 (77%), Positives = 107/119 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DV
Sbjct: 63 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRGERGNDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II+LVGNKTDL+D+R+V+T +GE +AK+ +MFIETSAK G+NVKQLFRR+A ALPGMD
Sbjct: 123 IIVLVGNKTDLNDRREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQLFRRIAQALPGMD 181
>gi|389644110|ref|XP_003719687.1| Ras-like protein Rab-6A [Magnaporthe oryzae 70-15]
gi|351639456|gb|EHA47320.1| Ras-like protein Rab-6A [Magnaporthe oryzae 70-15]
Length = 209
Score = 250 bits (639), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 133/227 (58%), Positives = 150/227 (66%), Gaps = 64/227 (28%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
S +G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 4 SGTGAYNNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 40
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
D YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 41 DGMYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNA 100
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF T KWIDDVR ERG+DVII+L
Sbjct: 101 KSFQNTRKWIDDVRAERGNDVIIVL----------------------------------- 125
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDL+DKR+V+T++GE +AK+ N+MFIETSAK G+NV+
Sbjct: 126 ------VGNKTDLNDKREVTTQQGEEEAKKNNLMFIETSAKVGHNVQ 166
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 91/122 (74%), Positives = 110/122 (90%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DV
Sbjct: 62 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRAERGNDV 121
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKR+V+T++GE +AK+ N+MFIETSAK G+NV+ LF+R+A +LPGM+
Sbjct: 122 IIVLVGNKTDLNDKREVTTQQGEEEAKKNNLMFIETSAKVGHNVQPLFKRIARSLPGMEG 181
Query: 348 TE 349
TE
Sbjct: 182 TE 183
>gi|213410657|ref|XP_002176098.1| GTPase Ryh1 [Schizosaccharomyces japonicus yFS275]
gi|212004145|gb|EEB09805.1| GTPase Ryh1 [Schizosaccharomyces japonicus yFS275]
Length = 201
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 137/228 (60%), Positives = 148/228 (64%), Gaps = 68/228 (29%)
Query: 7 FGNP----LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
G+P LRKFKLVFLGEQSVGKTSL ITRFMYD FD
Sbjct: 1 MGDPYSFSLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDQFD 37
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VA++VYDITN N
Sbjct: 38 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHN 97
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF T KWIDDVR ER DVII+L
Sbjct: 98 SFVNTEKWIDDVRAERSDDVIIVL------------------------------------ 121
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL++KRQVS EEGE+KAKEL +M +ETSAKAGYNVKQ+
Sbjct: 122 -----VGNKTDLAEKRQVSLEEGEQKAKELGIMHMETSAKAGYNVKQL 164
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 94/124 (75%), Positives = 109/124 (87%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VA++VYDITN NSF T KWIDDVR ER DV
Sbjct: 58 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIDDVRAERSDDV 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL++KRQVS EEGE+KAKEL +M +ETSAKAGYNVKQLFRR+A LPGM++
Sbjct: 118 IIVLVGNKTDLAEKRQVSLEEGEQKAKELGIMHMETSAKAGYNVKQLFRRIAQMLPGMEN 177
Query: 348 TENK 351
+ +
Sbjct: 178 VDTQ 181
>gi|392572292|gb|EIW65444.1| hypothetical protein TREMEDRAFT_70574 [Tremella mesenterica DSM
1558]
Length = 216
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 135/220 (61%), Positives = 146/220 (66%), Gaps = 64/220 (29%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
NPLRKFKLVFLGEQSVGKTSL ITRFMYD+FDNTYQAT
Sbjct: 18 NPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDTFDNTYQAT 54
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYDITN SF TS
Sbjct: 55 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRTSFLNTS 114
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KW+DDVR ERG DVII+L V
Sbjct: 115 KWVDDVRNERGQDVIIVL-----------------------------------------V 133
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
GNKTDL+DKRQV+ EE +++AKEL VM IETSAKAG+NVK
Sbjct: 134 GNKTDLNDKRQVTPEELDKRAKELGVMSIETSAKAGHNVK 173
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 93/124 (75%), Positives = 107/124 (86%), Gaps = 2/124 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYDITN SF TSKW+DDVR ERG DV
Sbjct: 69 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRTSFLNTSKWVDDVRNERGQDV 128
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKRQV+ EE +++AKEL VM IETSAKAG+NVK LF+++A ALPG
Sbjct: 129 IIVLVGNKTDLNDKRQVTPEELDKRAKELGVMSIETSAKAGHNVKTLFKKIAMALPG--G 186
Query: 348 TENK 351
ENK
Sbjct: 187 AENK 190
>gi|169621732|ref|XP_001804276.1| hypothetical protein SNOG_14076 [Phaeosphaeria nodorum SN15]
gi|160704321|gb|EAT78701.2| hypothetical protein SNOG_14076 [Phaeosphaeria nodorum SN15]
Length = 205
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 135/228 (59%), Positives = 151/228 (66%), Gaps = 65/228 (28%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
M+ SG + NPL+KFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MAQSG-YSNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 36
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN
Sbjct: 37 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITN 96
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
+F T KW+DDVR ERG+DVII+L
Sbjct: 97 KKTFENTRKWVDDVRGERGNDVIIVL---------------------------------- 122
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDL+DKR+V+T +GE +AK+ N+MFIETSAK G+NVK
Sbjct: 123 -------VGNKTDLNDKREVTTAQGEEEAKKNNLMFIETSAKVGHNVK 163
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 89/119 (74%), Positives = 106/119 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN +F T KW+DDVR ERG+DV
Sbjct: 59 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNKKTFENTRKWVDDVRGERGNDV 118
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II+LVGNKTDL+DKR+V+T +GE +AK+ N+MFIETSAK G+NVK LF+R+A ALPGM+
Sbjct: 119 IIVLVGNKTDLNDKREVTTAQGEEEAKKNNLMFIETSAKVGHNVKALFKRIAQALPGME 177
>gi|328849933|gb|EGF99105.1| hypothetical protein MELLADRAFT_40435 [Melampsora larici-populina
98AG31]
Length = 185
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 134/218 (61%), Positives = 146/218 (66%), Gaps = 64/218 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L+KFKLVFLGEQSVGKTSL ITRFMYD+FDNTYQATIG
Sbjct: 1 LKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDTFDNTYQATIG 37
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD+ N SF TSKW
Sbjct: 38 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVANRTSFMNTSKW 97
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
+DDVR ERG+DVII+L VGN
Sbjct: 98 VDDVRAERGNDVIIVL-----------------------------------------VGN 116
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
KTDL DKRQVS++E E+K+KELNVMFIETSAKAG+NVK
Sbjct: 117 KTDLGDKRQVSSDEAEKKSKELNVMFIETSAKAGHNVK 154
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 94/123 (76%), Positives = 110/123 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD+ N SF TSKW+DDVR ERG+DV
Sbjct: 50 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVANRTSFMNTSKWVDDVRAERGNDV 109
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL DKRQVS++E E+K+KELNVMFIETSAKAG+NVK LF+++A ALPGMD+
Sbjct: 110 IIVLVGNKTDLGDKRQVSSDEAEKKSKELNVMFIETSAKAGHNVKTLFKKIAQALPGMDT 169
Query: 348 TEN 350
+
Sbjct: 170 ASD 172
>gi|134118235|ref|XP_772218.1| hypothetical protein CNBM0510 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254827|gb|EAL17571.1| hypothetical protein CNBM0510 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 213
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 136/229 (59%), Positives = 150/229 (65%), Gaps = 67/229 (29%)
Query: 3 SSGDFGN---PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYD 59
SS DF + PL+KFKLVFLGEQSVGKTSL ITRFMYD
Sbjct: 8 SSADFSSASTPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYD 44
Query: 60 SFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT 119
+FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYDIT
Sbjct: 45 TFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDIT 104
Query: 120 NANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTER 179
N SF TSKW+DDVR ERG DVII+L
Sbjct: 105 NRTSFQNTSKWVDDVRNERGQDVIIVL--------------------------------- 131
Query: 180 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDL+DKRQV+ E+ +++AKEL VM IETSAKAG+NVK
Sbjct: 132 --------VGNKTDLNDKRQVTPEDLDKRAKELGVMSIETSAKAGHNVK 172
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 89/117 (76%), Positives = 104/117 (88%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYDITN SF TSKW+DDVR ERG DV
Sbjct: 68 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRTSFQNTSKWVDDVRNERGQDV 127
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
II+LVGNKTDL+DKRQV+ E+ +++AKEL VM IETSAKAG+NVK LF+++A ALPG
Sbjct: 128 IIVLVGNKTDLNDKRQVTPEDLDKRAKELGVMSIETSAKAGHNVKTLFKKIAMALPG 184
>gi|347838050|emb|CCD52622.1| similar to ras-related protein Rab-6A [Botryotinia fuckeliana]
Length = 207
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 133/226 (58%), Positives = 149/226 (65%), Gaps = 64/226 (28%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
++G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSFD
Sbjct: 4 ATGTYNNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFD 40
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
N YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+N
Sbjct: 41 NMYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNRK 100
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF T KW+DDVR ERG+DVII+L
Sbjct: 101 SFQNTRKWVDDVRGERGNDVIIVL------------------------------------ 124
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDL+DKR+V+T EGE +AK+ N+MFIETSAK G+NVK
Sbjct: 125 -----VGNKTDLNDKREVTTSEGEEEAKKNNLMFIETSAKLGHNVK 165
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 92/123 (74%), Positives = 108/123 (87%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+N SF T KW+DDVR ERG+DV
Sbjct: 61 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNRKSFQNTRKWVDDVRGERGNDV 120
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKR+V+T EGE +AK+ N+MFIETSAK G+NVK LFRR+A ALPGM+
Sbjct: 121 IIVLVGNKTDLNDKREVTTSEGEEEAKKNNLMFIETSAKLGHNVKTLFRRIAQALPGMEG 180
Query: 348 TEN 350
+N
Sbjct: 181 ADN 183
>gi|19114161|ref|NP_593249.1| GTPase Ryh1 [Schizosaccharomyces pombe 972h-]
gi|134131|sp|P17608.1|RYH1_SCHPO RecName: Full=GTP-binding protein ryh1
gi|5077|emb|CAA36715.1| ryh1 [Schizosaccharomyces pombe]
gi|2330800|emb|CAB11173.1| GTPase Ryh1 [Schizosaccharomyces pombe]
Length = 201
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 134/225 (59%), Positives = 147/225 (65%), Gaps = 64/225 (28%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
S ++ LRKFKLVFLGEQSVGKTSL ITRFMYD FDN
Sbjct: 2 SENYSFSLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDQFDN 38
Query: 64 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VA++VYDITN NS
Sbjct: 39 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNS 98
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
F T KWI+DVR ERG DVII+L
Sbjct: 99 FVNTEKWIEDVRAERGDDVIIVL------------------------------------- 121
Query: 184 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDL+DKRQV+ EEGE+KAKEL +M +ETSAKAG+NVK
Sbjct: 122 ----VGNKTDLADKRQVTQEEGEKKAKELKIMHMETSAKAGHNVK 162
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 92/127 (72%), Positives = 110/127 (86%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VA++VYDITN NSF T KWI+DVR ERG DV
Sbjct: 58 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDV 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKRQV+ EEGE+KAKEL +M +ETSAKAG+NVK LFR++A LPGM++
Sbjct: 118 IIVLVGNKTDLADKRQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKIAQMLPGMEN 177
Query: 348 TENKPPE 354
E + +
Sbjct: 178 VETQSTQ 184
>gi|225558550|gb|EEH06834.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
gi|240274987|gb|EER38502.1| GTP-binding protein [Ajellomyces capsulatus H143]
Length = 209
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 133/229 (58%), Positives = 151/229 (65%), Gaps = 64/229 (27%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
S++ + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 5 SATESYSNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 41
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DN YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 42 DNMYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNA 101
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF T KW+DDVR ERG+DVII+L
Sbjct: 102 KSFQNTRKWVDDVRGERGNDVIIVL----------------------------------- 126
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK G+NVKQ+
Sbjct: 127 ------VGNKTDLNDKREVTTAQGEEEAKKHGLMFIETSAKVGHNVKQL 169
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/119 (77%), Positives = 107/119 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KW+DDVR ERG+DV
Sbjct: 63 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWVDDVRGERGNDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II+LVGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK G+NVKQLFRR+A ALPGMD
Sbjct: 123 IIVLVGNKTDLNDKREVTTAQGEEEAKKHGLMFIETSAKVGHNVKQLFRRIAQALPGMD 181
>gi|358396900|gb|EHK46275.1| secretion-related small GTPase RAB6/RYH1/SRG3 [Trichoderma
atroviride IMI 206040]
Length = 207
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 131/230 (56%), Positives = 150/230 (65%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
M+ +G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MAQAGSYNNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDN YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+N
Sbjct: 38 FDNMYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
A SF T KWIDDVR ERG+DVII+L
Sbjct: 98 AKSFQNTKKWIDDVRAERGNDVIIVL---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR+V+T++GE +AK + F+ETSAK G+NV+ +
Sbjct: 124 -------VGNKTDLNDKREVTTQQGEEEAKRQGLRFVETSAKLGHNVQNL 166
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 87/121 (71%), Positives = 107/121 (88%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DVII
Sbjct: 62 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTKKWIDDVRAERGNDVII 121
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
+LVGNKTDL+DKR+V+T++GE +AK + F+ETSAK G+NV+ LF+R+A ALPGM+ ++
Sbjct: 122 VLVGNKTDLNDKREVTTQQGEEEAKRQGLRFVETSAKLGHNVQNLFKRIAQALPGMEGSD 181
Query: 350 N 350
+
Sbjct: 182 S 182
>gi|325094335|gb|EGC47645.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
Length = 209
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 133/229 (58%), Positives = 151/229 (65%), Gaps = 64/229 (27%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
S++ + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 5 SATESYSNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 41
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DN YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 42 DNMYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNA 101
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF T KW+DDVR ERG+DVII+L
Sbjct: 102 KSFQNTRKWVDDVRGERGNDVIIVL----------------------------------- 126
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK G+NVKQ+
Sbjct: 127 ------VGNKTDLNDKREVTTAQGEEEAKKHGLMFIETSAKVGHNVKQL 169
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/119 (77%), Positives = 107/119 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KW+DDVR ERG+DV
Sbjct: 63 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWVDDVRGERGNDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II+LVGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK G+NVKQLFRR+A ALPGMD
Sbjct: 123 IIVLVGNKTDLNDKREVTTAQGEEEAKKHGLMFIETSAKVGHNVKQLFRRIAQALPGMD 181
>gi|451856251|gb|EMD69542.1| hypothetical protein COCSADRAFT_78453 [Cochliobolus sativus ND90Pr]
gi|452003327|gb|EMD95784.1| hypothetical protein COCHEDRAFT_1087944 [Cochliobolus
heterostrophus C5]
Length = 205
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 134/228 (58%), Positives = 151/228 (66%), Gaps = 65/228 (28%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
M+ +G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MAQAG-YSNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 36
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN
Sbjct: 37 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITN 96
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
+F T KW+DDVR ERG+DVII+L
Sbjct: 97 KKTFENTRKWVDDVRGERGNDVIIVL---------------------------------- 122
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDL+DKR+V+T +GE +AK+ N+MFIETSAK G+NVK
Sbjct: 123 -------VGNKTDLNDKREVTTAQGEEEAKKNNLMFIETSAKVGHNVK 163
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 89/119 (74%), Positives = 106/119 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN +F T KW+DDVR ERG+DV
Sbjct: 59 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNKKTFENTRKWVDDVRGERGNDV 118
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II+LVGNKTDL+DKR+V+T +GE +AK+ N+MFIETSAK G+NVK LF+R+A ALPGM+
Sbjct: 119 IIVLVGNKTDLNDKREVTTAQGEEEAKKNNLMFIETSAKVGHNVKALFKRIAQALPGME 177
>gi|261193297|ref|XP_002623054.1| rab6 [Ajellomyces dermatitidis SLH14081]
gi|239588659|gb|EEQ71302.1| rab6 [Ajellomyces dermatitidis SLH14081]
gi|239614016|gb|EEQ91003.1| rab6 [Ajellomyces dermatitidis ER-3]
gi|327353362|gb|EGE82219.1| GTP-binding protein ryh1 [Ajellomyces dermatitidis ATCC 18188]
Length = 209
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 133/229 (58%), Positives = 151/229 (65%), Gaps = 64/229 (27%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
S++ + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 5 SATEAYSNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 41
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DN YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 42 DNMYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNA 101
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF T KW+DDVR ERG+DVII+L
Sbjct: 102 KSFQNTRKWVDDVRGERGNDVIIVL----------------------------------- 126
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK G+NVKQ+
Sbjct: 127 ------VGNKTDLNDKREVTTAQGEEEAKKHGLMFIETSAKVGHNVKQL 169
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/119 (77%), Positives = 107/119 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KW+DDVR ERG+DV
Sbjct: 63 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWVDDVRGERGNDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II+LVGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK G+NVKQLFRR+A ALPGMD
Sbjct: 123 IIVLVGNKTDLNDKREVTTAQGEEEAKKHGLMFIETSAKVGHNVKQLFRRIAQALPGMD 181
>gi|296806631|ref|XP_002844115.1| GTP-binding protein ryh1 [Arthroderma otae CBS 113480]
gi|238845417|gb|EEQ35079.1| GTP-binding protein ryh1 [Arthroderma otae CBS 113480]
Length = 209
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 133/229 (58%), Positives = 149/229 (65%), Gaps = 64/229 (27%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
S G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 5 SQVGSYSNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 41
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI++S VAVVVYDI+NA
Sbjct: 42 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIQNSNVAVVVYDISNA 101
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF T KW+DDVR ERG+DVII L
Sbjct: 102 KSFQNTRKWVDDVRDERGNDVIIAL----------------------------------- 126
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR+V+TE+GE +AK+ +MFIETSAK G+NVK +
Sbjct: 127 ------VGNKTDLNDKREVTTEQGEEEAKKNGLMFIETSAKLGHNVKNL 169
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/119 (73%), Positives = 105/119 (88%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYI++S VAVVVYDI+NA SF T KW+DDVR ERG+DV
Sbjct: 63 RTVRLQLWDTAGQERFRSLIPSYIQNSNVAVVVYDISNAKSFQNTRKWVDDVRDERGNDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II LVGNKTDL+DKR+V+TE+GE +AK+ +MFIETSAK G+NVK LF+++A ALPGM+
Sbjct: 123 IIALVGNKTDLNDKREVTTEQGEEEAKKNGLMFIETSAKLGHNVKNLFKKIAQALPGME 181
>gi|440639268|gb|ELR09187.1| Ras-like protein Rab-6B [Geomyces destructans 20631-21]
Length = 209
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 130/224 (58%), Positives = 149/224 (66%), Gaps = 64/224 (28%)
Query: 7 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQ 66
+ NPL+KFKLVFLGEQSVGKTSL ITRFMYDSFDN YQ
Sbjct: 9 YNNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDNMYQ 45
Query: 67 ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 126
ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF
Sbjct: 46 ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQN 105
Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
T KW+DDVR ERG+DVII+L
Sbjct: 106 TRKWVDDVRGERGNDVIIVL---------------------------------------- 125
Query: 187 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+D+R+V+T++GE +AK+ N+MFIETSAK G+N+K +
Sbjct: 126 -VGNKTDLNDRREVTTQQGEEEAKKNNLMFIETSAKVGHNIKNL 168
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 89/122 (72%), Positives = 109/122 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KW+DDVR ERG+DV
Sbjct: 62 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWVDDVRGERGNDV 121
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+D+R+V+T++GE +AK+ N+MFIETSAK G+N+K LFRR+A ALPGM+
Sbjct: 122 IIVLVGNKTDLNDRREVTTQQGEEEAKKNNLMFIETSAKVGHNIKNLFRRIAQALPGMEG 181
Query: 348 TE 349
+
Sbjct: 182 AD 183
>gi|315045802|ref|XP_003172276.1| GTP-binding protein ryh1 [Arthroderma gypseum CBS 118893]
gi|311342662|gb|EFR01865.1| GTP-binding protein ryh1 [Arthroderma gypseum CBS 118893]
Length = 209
Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 133/229 (58%), Positives = 149/229 (65%), Gaps = 64/229 (27%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
S G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 5 SQVGSYSNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 41
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI++S VAVVVYDI+NA
Sbjct: 42 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIQNSNVAVVVYDISNA 101
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF T KW+DDVR ERG+DVII L
Sbjct: 102 KSFQNTRKWVDDVRDERGNDVIIAL----------------------------------- 126
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR+V+TE+GE +AK+ +MFIETSAK G+NVK +
Sbjct: 127 ------VGNKTDLNDKREVTTEQGEEEAKKNGLMFIETSAKLGHNVKNL 169
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 87/119 (73%), Positives = 105/119 (88%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYI++S VAVVVYDI+NA SF T KW+DDVR ERG+DV
Sbjct: 63 RTVRLQLWDTAGQERFRSLIPSYIQNSNVAVVVYDISNAKSFQNTRKWVDDVRDERGNDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II LVGNKTDL+DKR+V+TE+GE +AK+ +MFIETSAK G+NVK LF+++A ALPGM+
Sbjct: 123 IIALVGNKTDLNDKREVTTEQGEEEAKKNGLMFIETSAKLGHNVKNLFKKIAQALPGME 181
>gi|400599769|gb|EJP67460.1| Ras family protein [Beauveria bassiana ARSEF 2860]
Length = 208
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 128/228 (56%), Positives = 149/228 (65%), Gaps = 64/228 (28%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
+ G + NPL+KFKLVFLGEQSVGKT+LI TRFMYD FD
Sbjct: 4 AGGSYNNPLKKFKLVFLGEQSVGKTALI-----------------------TRFMYDCFD 40
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
N YQAT+GIDF SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD++NA
Sbjct: 41 NMYQATVGIDFFSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSNAK 100
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF T KWIDDVR ERG+DVII+L
Sbjct: 101 SFQNTKKWIDDVRAERGNDVIIVL------------------------------------ 124
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR+V+T++GE +AK+ N+MF+ETSAK G+NVK +
Sbjct: 125 -----VGNKTDLNDKREVTTQQGEDEAKKNNLMFVETSAKLGHNVKHL 167
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 90/122 (73%), Positives = 110/122 (90%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD++NA SF T KWIDDVR ERG+DV
Sbjct: 61 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSNAKSFQNTKKWIDDVRAERGNDV 120
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKR+V+T++GE +AK+ N+MF+ETSAK G+NVK LF+R+A ALPGM+
Sbjct: 121 IIVLVGNKTDLNDKREVTTQQGEDEAKKNNLMFVETSAKLGHNVKHLFKRIAQALPGMEG 180
Query: 348 TE 349
T+
Sbjct: 181 TD 182
>gi|327304701|ref|XP_003237042.1| GTP-binding protein ryh1 [Trichophyton rubrum CBS 118892]
gi|326460040|gb|EGD85493.1| GTP-binding protein ryh1 [Trichophyton rubrum CBS 118892]
gi|326472998|gb|EGD97007.1| Ras small monomeric GTPase [Trichophyton tonsurans CBS 112818]
Length = 209
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 133/229 (58%), Positives = 149/229 (65%), Gaps = 64/229 (27%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
S G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 5 SQVGSYSNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 41
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI++S VAVVVYDI+NA
Sbjct: 42 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIQNSNVAVVVYDISNA 101
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF T KW+DDVR ERG+DVII L
Sbjct: 102 KSFQNTRKWVDDVRDERGNDVIIAL----------------------------------- 126
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR+V+TE+GE +AK+ +MFIETSAK G+NVK +
Sbjct: 127 ------VGNKTDLNDKREVTTEQGEEEAKKNGLMFIETSAKLGHNVKNL 169
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 87/119 (73%), Positives = 105/119 (88%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYI++S VAVVVYDI+NA SF T KW+DDVR ERG+DV
Sbjct: 63 RTVRLQLWDTAGQERFRSLIPSYIQNSNVAVVVYDISNAKSFQNTRKWVDDVRDERGNDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II LVGNKTDL+DKR+V+TE+GE +AK+ +MFIETSAK G+NVK LF+++A ALPGM+
Sbjct: 123 IIALVGNKTDLNDKREVTTEQGEEEAKKNGLMFIETSAKLGHNVKNLFKKIAQALPGME 181
>gi|242046344|ref|XP_002461043.1| hypothetical protein SORBIDRAFT_02g039720 [Sorghum bicolor]
gi|241924420|gb|EER97564.1| hypothetical protein SORBIDRAFT_02g039720 [Sorghum bicolor]
Length = 209
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 134/222 (60%), Positives = 146/222 (65%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ L K+KLVFLG+QSVGKTS+I TRFMYD FD TYQAT
Sbjct: 7 SALAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDTTYQAT 43
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD++N SF TS
Sbjct: 44 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSNRQSFLNTS 103
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWID+VRTERG DVII+L V
Sbjct: 104 KWIDEVRTERGGDVIIVL-----------------------------------------V 122
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQVSTEEGE KAKELNVMFIETSAKAG+N+K +
Sbjct: 123 GNKTDLVDKRQVSTEEGESKAKELNVMFIETSAKAGFNIKPL 164
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 100/124 (80%), Positives = 112/124 (90%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD++N SF TSKWID+VRTERG DV
Sbjct: 58 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSNRQSFLNTSKWIDEVRTERGGDV 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL DKRQVSTEEGE KAKELNVMFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 118 IIVLVGNKTDLVDKRQVSTEEGESKAKELNVMFIETSAKAGFNIKPLFRKIAAALPGMET 177
Query: 348 TENK 351
K
Sbjct: 178 LSAK 181
>gi|189205773|ref|XP_001939221.1| GTP-binding protein ryh1 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|330935415|ref|XP_003304956.1| hypothetical protein PTT_17690 [Pyrenophora teres f. teres 0-1]
gi|187975314|gb|EDU41940.1| GTP-binding protein ryh1 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|311318146|gb|EFQ86893.1| hypothetical protein PTT_17690 [Pyrenophora teres f. teres 0-1]
Length = 204
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 132/222 (59%), Positives = 147/222 (66%), Gaps = 64/222 (28%)
Query: 7 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQ 66
+ NPL+KFKLVFLGEQSVGKTSL ITRFMYDSFDNTYQ
Sbjct: 5 YSNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDNTYQ 41
Query: 67 ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 126
ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN +F
Sbjct: 42 ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNKKTFEN 101
Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
T KW+DDVR ERG+DVII+L
Sbjct: 102 TRKWVDDVRGERGNDVIIVL---------------------------------------- 121
Query: 187 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDL+DKR+V+T +GE +AK+ N+MFIETSAK G+NVK
Sbjct: 122 -VGNKTDLNDKREVTTAQGEEEAKKNNLMFIETSAKVGHNVK 162
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 92/142 (64%), Positives = 112/142 (78%), Gaps = 14/142 (9%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN +F T KW+DDVR ERG+DV
Sbjct: 58 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNKKTFENTRKWVDDVRGERGNDV 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKR+V+T +GE +AK+ N+MFIETSAK G+NVK LF+R+A ALPGM+
Sbjct: 118 IIVLVGNKTDLNDKREVTTAQGEEEAKKNNLMFIETSAKVGHNVKALFKRIAQALPGMEG 177
Query: 348 --------------TENKPPED 355
++PP+D
Sbjct: 178 EGQQGQSQMIDVNINPSQPPQD 199
>gi|396465538|ref|XP_003837377.1| similar to ras-related protein Rab-6A [Leptosphaeria maculans JN3]
gi|312213935|emb|CBX93937.1| similar to ras-related protein Rab-6A [Leptosphaeria maculans JN3]
Length = 210
Score = 247 bits (630), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 134/230 (58%), Positives = 152/230 (66%), Gaps = 65/230 (28%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
M+ SG + NPL+KFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MAQSG-YSNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 36
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN
Sbjct: 37 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITN 96
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
+F T KW+DDVR+ER +DVII+L
Sbjct: 97 KKTFENTRKWVDDVRSERSNDVIIVL---------------------------------- 122
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR+V+T +GE +AK+ N+MFIETSAK G+NVK +
Sbjct: 123 -------VGNKTDLNDKREVTTAQGEEEAKKNNLMFIETSAKVGHNVKAL 165
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 88/119 (73%), Positives = 106/119 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN +F T KW+DDVR+ER +DV
Sbjct: 59 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNKKTFENTRKWVDDVRSERSNDV 118
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II+LVGNKTDL+DKR+V+T +GE +AK+ N+MFIETSAK G+NVK LF+R+A ALPGM+
Sbjct: 119 IIVLVGNKTDLNDKREVTTAQGEEEAKKNNLMFIETSAKVGHNVKALFKRIAQALPGME 177
>gi|346326194|gb|EGX95790.1| RAS small monomeric GTPase Rab6 [Cordyceps militaris CM01]
Length = 208
Score = 247 bits (630), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 128/228 (56%), Positives = 149/228 (65%), Gaps = 64/228 (28%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
+ G + NPL+KFKLVFLGEQSVGKT+LI TRFMYD FD
Sbjct: 4 AGGSYNNPLKKFKLVFLGEQSVGKTALI-----------------------TRFMYDCFD 40
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
N YQAT+GIDF SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD++NA
Sbjct: 41 NMYQATVGIDFFSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSNAK 100
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF T KWIDDVR ERG+DVII+L
Sbjct: 101 SFQNTKKWIDDVRAERGNDVIIVL------------------------------------ 124
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR+V+T++GE +AK+ N+MF+ETSAK G+NVK +
Sbjct: 125 -----VGNKTDLNDKREVTTQQGEDEAKKNNLMFVETSAKLGHNVKNL 167
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 89/122 (72%), Positives = 110/122 (90%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD++NA SF T KWIDDVR ERG+DV
Sbjct: 61 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSNAKSFQNTKKWIDDVRAERGNDV 120
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKR+V+T++GE +AK+ N+MF+ETSAK G+NVK LF+R+A +LPGM+
Sbjct: 121 IIVLVGNKTDLNDKREVTTQQGEDEAKKNNLMFVETSAKLGHNVKNLFKRIAQSLPGMEG 180
Query: 348 TE 349
T+
Sbjct: 181 TD 182
>gi|414590929|tpg|DAA41500.1| TPA: hypothetical protein ZEAMMB73_483526 [Zea mays]
Length = 209
Score = 247 bits (630), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 134/222 (60%), Positives = 146/222 (65%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ L K+KLVFLG+QSVGKTS+I TRFMYD FD TYQAT
Sbjct: 7 SALAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDTTYQAT 43
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD++N SF TS
Sbjct: 44 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSNRQSFLNTS 103
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWID+VRTERG DVII+L V
Sbjct: 104 KWIDEVRTERGGDVIIVL-----------------------------------------V 122
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQVSTEEGE KAKELNVMFIETSAKAG+N+K +
Sbjct: 123 GNKTDLVDKRQVSTEEGESKAKELNVMFIETSAKAGFNIKPL 164
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 100/124 (80%), Positives = 112/124 (90%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD++N SF TSKWID+VRTERG DV
Sbjct: 58 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSNRQSFLNTSKWIDEVRTERGGDV 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL DKRQVSTEEGE KAKELNVMFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 118 IIVLVGNKTDLVDKRQVSTEEGESKAKELNVMFIETSAKAGFNIKPLFRKIAAALPGMET 177
Query: 348 TENK 351
K
Sbjct: 178 LSAK 181
>gi|452978536|gb|EME78299.1| hypothetical protein MYCFIDRAFT_190637 [Pseudocercospora fijiensis
CIRAD86]
Length = 207
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 131/226 (57%), Positives = 148/226 (65%), Gaps = 64/226 (28%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
S G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSFD
Sbjct: 4 SVGSYTNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFD 40
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
+TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDIT+
Sbjct: 41 STYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITSQK 100
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF QT KW+DDVR ERG+DVII+L
Sbjct: 101 SFQQTRKWVDDVRGERGNDVIIVL------------------------------------ 124
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDLS+KR+V+ ++GE ++K L MF+ETSAK G+NVK
Sbjct: 125 -----VGNKTDLSEKREVTAQQGEEESKRLGCMFVETSAKVGHNVK 165
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/128 (67%), Positives = 108/128 (84%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDIT+ SF QT KW+DDVR ERG+DV
Sbjct: 61 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITSQKSFQQTRKWVDDVRGERGNDV 120
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDLS+KR+V+ ++GE ++K L MF+ETSAK G+NVK LF+++A ALPGM+
Sbjct: 121 IIVLVGNKTDLSEKREVTAQQGEEESKRLGCMFVETSAKVGHNVKGLFKKIAQALPGMEG 180
Query: 348 TENKPPED 355
+ P +
Sbjct: 181 EGQQGPAN 188
>gi|348669592|gb|EGZ09414.1| hypothetical protein PHYSODRAFT_254677 [Phytophthora sojae]
Length = 202
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 133/225 (59%), Positives = 146/225 (64%), Gaps = 64/225 (28%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
PL K+KLVFLG+Q VGKTS+I TRFMYD+FDN YQATI
Sbjct: 3 PLAKYKLVFLGDQGVGKTSMI-----------------------TRFMYDTFDNAYQATI 39
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
GIDFLSKTMY+EDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN SF TSK
Sbjct: 40 GIDFLSKTMYMEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSK 99
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
WI+DVRTERG DV+IML VG
Sbjct: 100 WIEDVRTERGQDVVIML-----------------------------------------VG 118
Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NKTD+SD+RQVS EEG KAKE NVMFIETSAKAGYN+K + +L
Sbjct: 119 NKTDISDRRQVSIEEGSDKAKEENVMFIETSAKAGYNIKALFRKL 163
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 97/121 (80%), Positives = 108/121 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN SF TSKWI+DVRTERG DV
Sbjct: 53 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWIEDVRTERGQDV 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+IMLVGNKTD+SD+RQVS EEG KAKE NVMFIETSAKAGYN+K LFR++A LPGM++
Sbjct: 113 VIMLVGNKTDISDRRQVSIEEGSDKAKEENVMFIETSAKAGYNIKALFRKLATVLPGMEN 172
Query: 348 T 348
T
Sbjct: 173 T 173
>gi|294951515|ref|XP_002787019.1| RAB6 protein, putative [Perkinsus marinus ATCC 50983]
gi|239901609|gb|EER18815.1| RAB6 protein, putative [Perkinsus marinus ATCC 50983]
Length = 203
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 132/218 (60%), Positives = 142/218 (65%), Gaps = 64/218 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K+KLVFLGEQ+VGKTS+I TRFMYD+FD+ YQATIG
Sbjct: 5 LNKYKLVFLGEQAVGKTSII-----------------------TRFMYDTFDSNYQATIG 41
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN SF KW
Sbjct: 42 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNKASFMNCEKW 101
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
IDDVRTERG+DVIIML VGN
Sbjct: 102 IDDVRTERGNDVIIML-----------------------------------------VGN 120
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
KTDL+DKRQVSTEEGE+KAKE VMF E SAKAGYN+K
Sbjct: 121 KTDLADKRQVSTEEGEQKAKEQGVMFTECSAKAGYNIK 158
Score = 203 bits (517), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 96/114 (84%), Positives = 103/114 (90%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN SF KWIDDVRTERG+DVII
Sbjct: 56 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNKASFMNCEKWIDDVRTERGNDVII 115
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
MLVGNKTDL+DKRQVSTEEGE+KAKE VMF E SAKAGYN+K LFR++AAALP
Sbjct: 116 MLVGNKTDLADKRQVSTEEGEQKAKEQGVMFTECSAKAGYNIKALFRKLAAALP 169
>gi|358060564|dbj|GAA93714.1| hypothetical protein E5Q_00360 [Mixia osmundae IAM 14324]
Length = 252
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 132/222 (59%), Positives = 147/222 (66%), Gaps = 64/222 (28%)
Query: 7 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQ 66
F + L+KFKLVFLG+Q+ GKTSLI T+FMY SFD TYQ
Sbjct: 50 FAHALKKFKLVFLGDQNAGKTSLI-----------------------TQFMYGSFDATYQ 86
Query: 67 ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 126
ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN +SF
Sbjct: 87 ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRSSFAS 146
Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
T+KWIDDVR ERGSDVII+L
Sbjct: 147 TNKWIDDVRAERGSDVIIVL---------------------------------------- 166
Query: 187 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDL+DKRQV+TEE E++AK+L VMFIETSAKAG+NVK
Sbjct: 167 -VGNKTDLNDKRQVTTEEAEKRAKDLGVMFIETSAKAGHNVK 207
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 97/119 (81%), Positives = 110/119 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN +SF T+KWIDDVR ERGSDV
Sbjct: 103 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRSSFASTNKWIDDVRAERGSDV 162
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II+LVGNKTDL+DKRQV+TEE E++AK+L VMFIETSAKAG+NVK LFR++A ALPGMD
Sbjct: 163 IIVLVGNKTDLNDKRQVTTEEAEKRAKDLGVMFIETSAKAGHNVKTLFRKIAQALPGMD 221
>gi|294881140|ref|XP_002769264.1| RAB6 protein, putative [Perkinsus marinus ATCC 50983]
gi|294956149|ref|XP_002788825.1| RAB6 protein, putative [Perkinsus marinus ATCC 50983]
gi|239872542|gb|EER01982.1| RAB6 protein, putative [Perkinsus marinus ATCC 50983]
gi|239904437|gb|EER20621.1| RAB6 protein, putative [Perkinsus marinus ATCC 50983]
Length = 205
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 132/220 (60%), Positives = 143/220 (65%), Gaps = 64/220 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K+KLVFLGEQ+VGKTS+I TRFMYD+FD+ YQATIG
Sbjct: 5 LNKYKLVFLGEQAVGKTSII-----------------------TRFMYDTFDSNYQATIG 41
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN SF KW
Sbjct: 42 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNKASFMNCEKW 101
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
IDDVRTERG+DVIIML VGN
Sbjct: 102 IDDVRTERGNDVIIML-----------------------------------------VGN 120
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
KTDL+DKRQVSTEEGE+KAKE VMF E SAKAGYN+K +
Sbjct: 121 KTDLADKRQVSTEEGEQKAKEQGVMFTECSAKAGYNIKAL 160
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 96/116 (82%), Positives = 104/116 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN SF KWIDDVRTERG+DV
Sbjct: 54 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNKASFMNCEKWIDDVRTERGNDV 113
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
IIMLVGNKTDL+DKRQVSTEEGE+KAKE VMF E SAKAGYN+K LFR++AAALP
Sbjct: 114 IIMLVGNKTDLADKRQVSTEEGEQKAKEQGVMFTECSAKAGYNIKALFRKLAAALP 169
>gi|453081493|gb|EMF09542.1| ras-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 207
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 130/224 (58%), Positives = 146/224 (65%), Gaps = 64/224 (28%)
Query: 5 GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT 64
G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSFD+T
Sbjct: 6 GSYTNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDST 42
Query: 65 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 124
YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDIT+ SF
Sbjct: 43 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITSKKSF 102
Query: 125 HQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVI 184
QT KW+DDVR ERGSDVII+L
Sbjct: 103 EQTRKWVDDVRGERGSDVIIVL-------------------------------------- 124
Query: 185 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDL +KR+V+ ++GE ++K L MF+ETSAK G+NVK
Sbjct: 125 ---VGNKTDLGEKREVTAQQGEEESKRLGCMFVETSAKVGHNVK 165
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/128 (67%), Positives = 107/128 (83%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDIT+ SF QT KW+DDVR ERGSDV
Sbjct: 61 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITSKKSFEQTRKWVDDVRGERGSDV 120
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL +KR+V+ ++GE ++K L MF+ETSAK G+NVK LF+++A ALPGM+
Sbjct: 121 IIVLVGNKTDLGEKREVTAQQGEEESKRLGCMFVETSAKVGHNVKGLFKKIAQALPGMEG 180
Query: 348 TENKPPED 355
+ P +
Sbjct: 181 EGQQGPAN 188
>gi|148684516|gb|EDL16463.1| RAB6, member RAS oncogene family, isoform CRA_b [Mus musculus]
gi|149068774|gb|EDM18326.1| rCG39700, isoform CRA_c [Rattus norvegicus]
Length = 175
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 127/174 (72%), Positives = 130/174 (74%), Gaps = 41/174 (23%)
Query: 57 MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY 116
MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY
Sbjct: 1 MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY 60
Query: 117 DITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVR 176
DITN NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 61 DITNVNSFQQTTKWIDDVRTERGSDVIIML------------------------------ 90
Query: 177 TERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 91 -----------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 133
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 115/128 (89%), Positives = 122/128 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 27 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 86
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 87 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 146
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 147 TQDRSRED 154
>gi|398391937|ref|XP_003849428.1| hypothetical protein MYCGRDRAFT_101238 [Zymoseptoria tritici
IPO323]
gi|339469305|gb|EGP84404.1| hypothetical protein MYCGRDRAFT_101238 [Zymoseptoria tritici
IPO323]
Length = 207
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 129/224 (57%), Positives = 147/224 (65%), Gaps = 64/224 (28%)
Query: 5 GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT 64
G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSFD+T
Sbjct: 6 GSYTNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDST 42
Query: 65 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 124
YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD+T+ SF
Sbjct: 43 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVTSQKSF 102
Query: 125 HQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVI 184
QT KW+DDVR ERG+DVII+L
Sbjct: 103 AQTRKWVDDVRGERGNDVIIVL-------------------------------------- 124
Query: 185 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDL++KR+V+ ++GE +AK L MF+ETSAK G+NVK
Sbjct: 125 ---VGNKTDLNEKREVTAQQGEEEAKRLGCMFVETSAKVGHNVK 165
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/120 (70%), Positives = 105/120 (87%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD+T+ SF QT KW+DDVR ERG+DV
Sbjct: 61 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVTSQKSFAQTRKWVDDVRGERGNDV 120
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL++KR+V+ ++GE +AK L MF+ETSAK G+NVK LF+++A ALPGM+
Sbjct: 121 IIVLVGNKTDLNEKREVTAQQGEEEAKRLGCMFVETSAKVGHNVKGLFKKIAQALPGMEG 180
>gi|384247403|gb|EIE20890.1| ras-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 212
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 129/222 (58%), Positives = 147/222 (66%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+PL K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQAT
Sbjct: 8 SPLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQAT 44
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD++N SF T+
Sbjct: 45 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSNRQSFLNTA 104
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
+WI++VRTERGSDVI++L V
Sbjct: 105 RWIEEVRTERGSDVIVVL-----------------------------------------V 123
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQVS EEG+ KA+E NVMFIETSAKAG+N+K +
Sbjct: 124 GNKTDLVDKRQVSIEEGDAKAREFNVMFIETSAKAGFNIKAL 165
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/128 (74%), Positives = 112/128 (87%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD++N SF T++WI++VRTERGSDV
Sbjct: 59 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSNRQSFLNTARWIEEVRTERGSDV 118
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
I++LVGNKTDL DKRQVS EEG+ KA+E NVMFIETSAKAG+N+K LFR++AAALPGM+S
Sbjct: 119 IVVLVGNKTDLVDKRQVSIEEGDAKAREFNVMFIETSAKAGFNIKALFRKIAAALPGMES 178
Query: 348 TENKPPED 355
ED
Sbjct: 179 LSAAKQED 186
>gi|168062328|ref|XP_001783133.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665383|gb|EDQ52070.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 209
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 131/230 (56%), Positives = 148/230 (64%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS +PL K+KLVFLG+QSVGKTS+I TRFMYD
Sbjct: 1 MSGQSTTVSPLAKYKLVFLGDQSVGKTSVI-----------------------TRFMYDK 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD++N
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
SF T++W+++VRTERGSDVIIML
Sbjct: 98 RQSFLNTARWVEEVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL DKRQVS EEG+ KAKE VMFIETS+KAG+N+K +
Sbjct: 124 -------VGNKTDLLDKRQVSIEEGDAKAKEFGVMFIETSSKAGFNIKAL 166
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 92/120 (76%), Positives = 109/120 (90%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD++N SF T++W+++VRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSNRQSFLNTARWVEEVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL DKRQVS EEG+ KAKE VMFIETS+KAG+N+K LFR++AAALPGM++
Sbjct: 120 IIMLVGNKTDLLDKRQVSIEEGDAKAKEFGVMFIETSSKAGFNIKALFRKIAAALPGMEA 179
>gi|440793018|gb|ELR14219.1| GTPbinding protein [Acanthamoeba castellanii str. Neff]
Length = 195
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 129/226 (57%), Positives = 147/226 (65%), Gaps = 64/226 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
NPL K+KLVFLG+QSVGKTS+I TRFMYD+FDNTYQAT
Sbjct: 5 NPLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDTFDNTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS+VA+VVYDITN +F T+
Sbjct: 42 IGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDITNRTTFLDTA 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
+W++D+R ERG+DVI+ML V
Sbjct: 102 RWVEDIRAERGNDVILML-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
GNKTDL+DKR VS EEGE KAKE MFIETSAKAGYNVK + Q+
Sbjct: 121 GNKTDLADKRCVSAEEGESKAKEFGAMFIETSAKAGYNVKPLFRQV 166
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 92/124 (74%), Positives = 107/124 (86%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS+VA+VVYDITN +F T++W++D+R ERG+DV
Sbjct: 56 RTIRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDITNRTTFLDTARWVEDIRAERGNDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
I+MLVGNKTDL+DKR VS EEGE KAKE MFIETSAKAGYNVK LFR+VAAALPG+D
Sbjct: 116 ILMLVGNKTDLADKRCVSAEEGESKAKEFGAMFIETSAKAGYNVKPLFRQVAAALPGIDP 175
Query: 348 TENK 351
K
Sbjct: 176 IIQK 179
>gi|452838904|gb|EME40844.1| hypothetical protein DOTSEDRAFT_178065 [Dothistroma septosporum
NZE10]
Length = 207
Score = 243 bits (621), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 130/224 (58%), Positives = 146/224 (65%), Gaps = 64/224 (28%)
Query: 5 GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT 64
G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSFD+T
Sbjct: 6 GSYTNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDST 42
Query: 65 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 124
YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDIT+ SF
Sbjct: 43 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITSKKSF 102
Query: 125 HQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVI 184
QT KW+DDVR ERG+DVII+L
Sbjct: 103 EQTRKWVDDVRGERGNDVIIVL-------------------------------------- 124
Query: 185 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDLS+KR+V+ + GE ++K L MF+ETSAK G+NVK
Sbjct: 125 ---VGNKTDLSEKREVTAQMGEEESKRLGCMFVETSAKVGHNVK 165
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 86/120 (71%), Positives = 104/120 (86%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDIT+ SF QT KW+DDVR ERG+DV
Sbjct: 61 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITSKKSFEQTRKWVDDVRGERGNDV 120
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDLS+KR+V+ + GE ++K L MF+ETSAK G+NVK LF+++A ALPGM+
Sbjct: 121 IIVLVGNKTDLSEKREVTAQMGEEESKRLGCMFVETSAKVGHNVKGLFKKIAQALPGMEG 180
>gi|168014471|ref|XP_001759775.1| Rab6/RabH-family small GTPase [Physcomitrella patens subsp. patens]
gi|162688905|gb|EDQ75279.1| Rab6/RabH-family small GTPase [Physcomitrella patens subsp. patens]
Length = 211
Score = 243 bits (620), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 129/222 (58%), Positives = 146/222 (65%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+PL K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQAT
Sbjct: 11 SPLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQAT 47
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD++N SF T+
Sbjct: 48 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSNRQSFMNTA 107
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
+W+++VRTERGSDVIIML V
Sbjct: 108 RWVEEVRTERGSDVIIML-----------------------------------------V 126
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQVS EEG+ KAKE VMFIETS+KAG+N+K +
Sbjct: 127 GNKTDLVDKRQVSIEEGDAKAKEFGVMFIETSSKAGFNIKAL 168
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 92/120 (76%), Positives = 109/120 (90%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD++N SF T++W+++VRTERGSDV
Sbjct: 62 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSNRQSFMNTARWVEEVRTERGSDV 121
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL DKRQVS EEG+ KAKE VMFIETS+KAG+N+K LFR++AAALPGM++
Sbjct: 122 IIMLVGNKTDLVDKRQVSIEEGDAKAKEFGVMFIETSSKAGFNIKALFRKIAAALPGMET 181
>gi|168066679|ref|XP_001785261.1| Rab6/RabH-family small GTPase [Physcomitrella patens subsp. patens]
gi|162663131|gb|EDQ49913.1| Rab6/RabH-family small GTPase [Physcomitrella patens subsp. patens]
Length = 213
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 129/222 (58%), Positives = 146/222 (65%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+PL K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQAT
Sbjct: 13 SPLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQAT 49
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD++N SF T+
Sbjct: 50 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSNRQSFLNTA 109
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
+W+++VRTERGSDVIIML V
Sbjct: 110 RWVEEVRTERGSDVIIML-----------------------------------------V 128
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQVS EEG+ KAKE VMFIETS+KAG+N+K +
Sbjct: 129 GNKTDLVDKRQVSIEEGDAKAKEFGVMFIETSSKAGFNIKAL 170
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 92/120 (76%), Positives = 109/120 (90%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD++N SF T++W+++VRTERGSDV
Sbjct: 64 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSNRQSFLNTARWVEEVRTERGSDV 123
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL DKRQVS EEG+ KAKE VMFIETS+KAG+N+K LFR++AAALPGM++
Sbjct: 124 IIMLVGNKTDLVDKRQVSIEEGDAKAKEFGVMFIETSSKAGFNIKALFRKIAAALPGMEA 183
>gi|225427294|ref|XP_002281823.1| PREDICTED: ras-related protein RABH1b [Vitis vinifera]
gi|147782540|emb|CAN75036.1| hypothetical protein VITISV_014840 [Vitis vinifera]
Length = 208
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 130/222 (58%), Positives = 146/222 (65%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ L K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQAT
Sbjct: 5 SALAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ + SF TS
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTS 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI++VRTERGSDVII+L V
Sbjct: 102 KWIEEVRTERGSDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL +KRQVS EEGE KA+ELNVMFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKAL 162
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 96/128 (75%), Positives = 113/128 (88%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ + SF TSKWI++VRTERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTSKWIEEVRTERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL +KRQVS EEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 116 IIVLVGNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMET 175
Query: 348 TENKPPED 355
+ ED
Sbjct: 176 LSSAKQED 183
>gi|164429212|ref|XP_961894.2| GTP-binding protein ryh1 [Neurospora crassa OR74A]
gi|157072984|gb|EAA32658.2| GTP-binding protein ryh1 [Neurospora crassa OR74A]
Length = 218
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 132/231 (57%), Positives = 148/231 (64%), Gaps = 69/231 (29%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
+ G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSFD
Sbjct: 4 AGGSYNNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFD 40
Query: 63 NTYQATIGIDFLSK-----TMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYD 117
N YQATIGIDFLSK TMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD
Sbjct: 41 NMYQATIGIDFLSKACSTPTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 100
Query: 118 ITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRT 177
I+NA SF T KWIDDVR ERG+DVII+L
Sbjct: 101 ISNAKSFQNTRKWIDDVRAERGNDVIIVL------------------------------- 129
Query: 178 ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDL+DKR+V+T +GE +A+ N+MF+ETSAK G+NVK
Sbjct: 130 ----------VGNKTDLNDKREVTTAQGEEEARRNNLMFVETSAKLGHNVK 170
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 89/118 (75%), Positives = 105/118 (88%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DV
Sbjct: 66 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRAERGNDV 125
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
II+LVGNKTDL+DKR+V+T +GE +A+ N+MF+ETSAK G+NVK LF+R+A ALPGM
Sbjct: 126 IIVLVGNKTDLNDKREVTTAQGEEEARRNNLMFVETSAKLGHNVKTLFKRIAQALPGM 183
>gi|336471794|gb|EGO59955.1| GTP-binding protein ryh1 [Neurospora tetrasperma FGSC 2508]
gi|350292910|gb|EGZ74105.1| GTP-binding protein ryh1 [Neurospora tetrasperma FGSC 2509]
Length = 218
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 132/231 (57%), Positives = 148/231 (64%), Gaps = 69/231 (29%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
+ G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSFD
Sbjct: 4 AGGSYNNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFD 40
Query: 63 NTYQATIGIDFLSK-----TMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYD 117
N YQATIGIDFLSK TMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD
Sbjct: 41 NMYQATIGIDFLSKACSIPTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 100
Query: 118 ITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRT 177
I+NA SF T KWIDDVR ERG+DVII+L
Sbjct: 101 ISNAKSFQNTRKWIDDVRAERGNDVIIVL------------------------------- 129
Query: 178 ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDL+DKR+V+T +GE +A+ N+MF+ETSAK G+NVK
Sbjct: 130 ----------VGNKTDLNDKREVTTAQGEEEARRNNLMFVETSAKLGHNVK 170
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 93/138 (67%), Positives = 112/138 (81%), Gaps = 8/138 (5%)
Query: 208 KAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 267
KA + M++E + VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 54 KACSIPTMYLED--------RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAK 105
Query: 268 SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA 327
SF T KWIDDVR ERG+DVII+LVGNKTDL+DKR+V+T +GE +A+ N+MF+ETSAK
Sbjct: 106 SFQNTRKWIDDVRAERGNDVIIVLVGNKTDLNDKREVTTAQGEEEARRNNLMFVETSAKL 165
Query: 328 GYNVKQLFRRVAAALPGM 345
G+NVK LF+R+A ALPGM
Sbjct: 166 GHNVKTLFKRIAQALPGM 183
>gi|159463966|ref|XP_001690213.1| small rab-related GTPase [Chlamydomonas reinhardtii]
gi|158284201|gb|EDP09951.1| small rab-related GTPase [Chlamydomonas reinhardtii]
Length = 211
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 133/227 (58%), Positives = 146/227 (64%), Gaps = 64/227 (28%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
SG +PL K+KLVFLG+QSVGKTS+I TRFMYD FDN
Sbjct: 2 SGATTSPLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDN 38
Query: 64 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN S
Sbjct: 39 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQS 98
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
F T++WI +VRTERG+DVII L
Sbjct: 99 FLNTARWIQEVRTERGNDVIIFL------------------------------------- 121
Query: 184 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL DKRQVS EEG+ KA+ELNV FIETSAKAG N+K +
Sbjct: 122 ----VGNKTDLIDKRQVSIEEGDAKARELNVNFIETSAKAGLNIKAL 164
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 98/125 (78%), Positives = 111/125 (88%), Gaps = 1/125 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN SF T++WI +VRTERG+DV
Sbjct: 58 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFLNTARWIQEVRTERGNDV 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II LVGNKTDL DKRQVS EEG+ KA+ELNV FIETSAKAG N+K LFR++AAALPGM+S
Sbjct: 118 IIFLVGNKTDLIDKRQVSIEEGDAKARELNVNFIETSAKAGLNIKALFRKIAAALPGMES 177
Query: 348 -TENK 351
T+NK
Sbjct: 178 VTQNK 182
>gi|294873005|ref|XP_002766487.1| RAB6 protein, putative [Perkinsus marinus ATCC 50983]
gi|239867367|gb|EEQ99204.1| RAB6 protein, putative [Perkinsus marinus ATCC 50983]
Length = 205
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 131/220 (59%), Positives = 142/220 (64%), Gaps = 64/220 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K+KLVFLGEQ+VGKTS+I TRFMYD+FD+ YQATIG
Sbjct: 5 LNKYKLVFLGEQAVGKTSII-----------------------TRFMYDTFDSNYQATIG 41
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVV YDITN SF KW
Sbjct: 42 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVGYDITNKASFMNCEKW 101
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
IDDVRTERG+DVIIML VGN
Sbjct: 102 IDDVRTERGNDVIIML-----------------------------------------VGN 120
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
KTDL+DKRQVSTEEGE+KAKE VMF E SAKAGYN+K +
Sbjct: 121 KTDLADKRQVSTEEGEQKAKEQGVMFTECSAKAGYNIKAL 160
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 95/116 (81%), Positives = 103/116 (88%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVV YDITN SF KWIDDVRTERG+DV
Sbjct: 54 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVGYDITNKASFMNCEKWIDDVRTERGNDV 113
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
IIMLVGNKTDL+DKRQVSTEEGE+KAKE VMF E SAKAGYN+K LFR++AAALP
Sbjct: 114 IIMLVGNKTDLADKRQVSTEEGEQKAKEQGVMFTECSAKAGYNIKALFRKLAAALP 169
>gi|255571107|ref|XP_002526504.1| protein with unknown function [Ricinus communis]
gi|223534179|gb|EEF35895.1| protein with unknown function [Ricinus communis]
Length = 208
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 130/222 (58%), Positives = 146/222 (65%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ L K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQAT
Sbjct: 5 SALAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ + SF TS
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTS 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI++VRTERGSDVII+L V
Sbjct: 102 KWIEEVRTERGSDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQVS EEGE KA++LNVMFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVDKRQVSIEEGEAKARDLNVMFIETSAKAGFNIKAL 162
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 96/128 (75%), Positives = 113/128 (88%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ + SF TSKWI++VRTERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTSKWIEEVRTERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL DKRQVS EEGE KA++LNVMFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 116 IIVLVGNKTDLVDKRQVSIEEGEAKARDLNVMFIETSAKAGFNIKALFRKIAAALPGMET 175
Query: 348 TENKPPED 355
+ ED
Sbjct: 176 LSSTKQED 183
>gi|15224916|ref|NP_181989.1| Ras-related protein RABH1B [Arabidopsis thaliana]
gi|297828175|ref|XP_002881970.1| hypothetical protein ARALYDRAFT_903887 [Arabidopsis lyrata subsp.
lyrata]
gi|75318653|sp|O80501.1|RAH1B_ARATH RecName: Full=Ras-related protein RABH1b; Short=AtRABH1b; AltName:
Full=Ras-related protein Rab6A; Short=AtRab6A
gi|3341681|gb|AAC27463.1| putative small GTP-binding protein [Arabidopsis thaliana]
gi|21593488|gb|AAM65455.1| putative small GTP-binding protein [Arabidopsis thaliana]
gi|107738267|gb|ABF83670.1| At2g44610 [Arabidopsis thaliana]
gi|110742258|dbj|BAE99055.1| putative small GTP-binding protein [Arabidopsis thaliana]
gi|297327809|gb|EFH58229.1| hypothetical protein ARALYDRAFT_903887 [Arabidopsis lyrata subsp.
lyrata]
gi|330255353|gb|AEC10447.1| Ras-related protein RABH1B [Arabidopsis thaliana]
gi|741994|prf||2008312A GTP-binding protein
Length = 208
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 129/222 (58%), Positives = 145/222 (65%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ L K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQAT
Sbjct: 5 SALAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ + SF T+
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTT 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWID+VRTERGSDVI++L V
Sbjct: 102 KWIDEVRTERGSDVIVVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQVS EE E KA+ELNVMFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVDKRQVSIEEAEAKARELNVMFIETSAKAGFNIKAL 162
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 95/128 (74%), Positives = 112/128 (87%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ + SF T+KWID+VRTERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
I++LVGNKTDL DKRQVS EE E KA+ELNVMFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 116 IVVLVGNKTDLVDKRQVSIEEAEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMET 175
Query: 348 TENKPPED 355
+ ED
Sbjct: 176 LSSTKQED 183
>gi|449461547|ref|XP_004148503.1| PREDICTED: ras-related protein RABH1b-like [Cucumis sativus]
gi|449528471|ref|XP_004171228.1| PREDICTED: ras-related protein RABH1b-like [Cucumis sativus]
Length = 208
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 129/222 (58%), Positives = 146/222 (65%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ L K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQAT
Sbjct: 5 SALAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ + +F TS
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTS 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI++VRTERGSDVII+L V
Sbjct: 102 KWIEEVRTERGSDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL +KRQVS EEGE KA+ELNVMFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKAL 162
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 95/128 (74%), Positives = 113/128 (88%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ + +F TSKWI++VRTERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTSKWIEEVRTERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL +KRQVS EEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 116 IIVLVGNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMET 175
Query: 348 TENKPPED 355
+ ED
Sbjct: 176 LSSTKQED 183
>gi|302833886|ref|XP_002948506.1| RabH/Rab6 [Volvox carteri f. nagariensis]
gi|300266193|gb|EFJ50381.1| RabH/Rab6 [Volvox carteri f. nagariensis]
Length = 211
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 132/227 (58%), Positives = 145/227 (63%), Gaps = 64/227 (28%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
S +PL K+KLVFLG+QSVGKTS+I TRFMYD FDN
Sbjct: 2 SAPAPSPLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDN 38
Query: 64 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN S
Sbjct: 39 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQS 98
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
F T++WI +VRTERG+DVII L
Sbjct: 99 FLNTARWIQEVRTERGNDVIIFL------------------------------------- 121
Query: 184 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL DKRQVS EEG+ KA+ELNV FIETSAKAG N+K +
Sbjct: 122 ----VGNKTDLIDKRQVSIEEGDAKARELNVNFIETSAKAGLNIKAL 164
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 98/125 (78%), Positives = 111/125 (88%), Gaps = 1/125 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN SF T++WI +VRTERG+DV
Sbjct: 58 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFLNTARWIQEVRTERGNDV 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II LVGNKTDL DKRQVS EEG+ KA+ELNV FIETSAKAG N+K LFR++AAALPGM+S
Sbjct: 118 IIFLVGNKTDLIDKRQVSIEEGDAKARELNVNFIETSAKAGLNIKALFRKIAAALPGMES 177
Query: 348 -TENK 351
T+NK
Sbjct: 178 VTQNK 182
>gi|313215908|emb|CBY37318.1| unnamed protein product [Oikopleura dioica]
Length = 478
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 131/207 (63%), Positives = 140/207 (67%), Gaps = 64/207 (30%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
++ DFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDSFD
Sbjct: 2 AATDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFD 38
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYD+TN N
Sbjct: 39 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDVTNIN 98
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF+QT+KWIDDVRTERG+DVII+L
Sbjct: 99 SFNQTNKWIDDVRTERGTDVIIVL------------------------------------ 122
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKA 209
VGNKTDL+DKRQVS +EGERKA
Sbjct: 123 -----VGNKTDLADKRQVSIDEGERKA 144
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/86 (87%), Positives = 83/86 (96%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYD+TN NSF+QT+KWIDDVRTERG+DV
Sbjct: 59 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDVTNINSFNQTNKWIDDVRTERGTDV 118
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKA 313
II+LVGNKTDL+DKRQVS +EGERKA
Sbjct: 119 IIVLVGNKTDLADKRQVSIDEGERKA 144
>gi|225453266|ref|XP_002266653.1| PREDICTED: ras-related protein RABH1b [Vitis vinifera]
Length = 208
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 129/222 (58%), Positives = 146/222 (65%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ L K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQAT
Sbjct: 5 SALAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ + SF T+
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTA 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI++VRTERGSDVII+L V
Sbjct: 102 KWIEEVRTERGSDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQVS EEGE KA++LNVMFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVDKRQVSIEEGEAKARDLNVMFIETSAKAGFNIKAL 162
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 95/128 (74%), Positives = 113/128 (88%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ + SF T+KWI++VRTERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTAKWIEEVRTERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL DKRQVS EEGE KA++LNVMFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 116 IIVLVGNKTDLVDKRQVSIEEGEAKARDLNVMFIETSAKAGFNIKALFRKIAAALPGMET 175
Query: 348 TENKPPED 355
+ ED
Sbjct: 176 LSSAKQED 183
>gi|168061935|ref|XP_001782940.1| Rab6/RabH-family small GTPase [Physcomitrella patens subsp. patens]
gi|162665558|gb|EDQ52238.1| Rab6/RabH-family small GTPase [Physcomitrella patens subsp. patens]
Length = 213
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 130/222 (58%), Positives = 146/222 (65%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+PL K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQAT
Sbjct: 13 SPLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQAT 49
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD++N SF TS
Sbjct: 50 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSNRQSFLNTS 109
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
+WI++V TERGSDVIIML V
Sbjct: 110 RWIEEVLTERGSDVIIML-----------------------------------------V 128
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQVS EEG+ KAKE+ VMFIETS+KAG+N+K +
Sbjct: 129 GNKTDLVDKRQVSIEEGDAKAKEVGVMFIETSSKAGFNIKAL 170
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 93/120 (77%), Positives = 109/120 (90%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD++N SF TS+WI++V TERGSDV
Sbjct: 64 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSNRQSFLNTSRWIEEVLTERGSDV 123
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL DKRQVS EEG+ KAKE+ VMFIETS+KAG+N+K LFR++AAALPGM++
Sbjct: 124 IIMLVGNKTDLVDKRQVSIEEGDAKAKEVGVMFIETSSKAGFNIKALFRKIAAALPGMEA 183
>gi|255580884|ref|XP_002531261.1| protein with unknown function [Ricinus communis]
gi|223529146|gb|EEF31125.1| protein with unknown function [Ricinus communis]
Length = 207
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 129/222 (58%), Positives = 144/222 (64%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+PL K+KLVFLG+QSVGKTS+I TRFMYD FD TYQAT
Sbjct: 5 SPLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDTTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ N SF TS
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTS 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI++VRTERGSDVI++L V
Sbjct: 102 KWIEEVRTERGSDVIVVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQVS EEG+ KAKE VMFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVDKRQVSIEEGDNKAKEFGVMFIETSAKAGFNIKPL 162
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 111/128 (86%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ N SF TSKWI++VRTERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSKWIEEVRTERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
I++LVGNKTDL DKRQVS EEG+ KAKE VMFIETSAKAG+N+K LFR++A+ALPGM++
Sbjct: 116 IVVLVGNKTDLVDKRQVSIEEGDNKAKEFGVMFIETSAKAGFNIKPLFRKIASALPGMET 175
Query: 348 TENKPPED 355
+ ED
Sbjct: 176 LSSTKQED 183
>gi|213515204|ref|NP_001133402.1| Ras-related protein Rab-6C [Salmo salar]
gi|209153591|gb|ACI33170.1| Ras-related protein Rab-6C [Salmo salar]
Length = 175
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 123/174 (70%), Positives = 130/174 (74%), Gaps = 41/174 (23%)
Query: 57 MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY 116
MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST+AVVVY
Sbjct: 1 MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTIAVVVY 60
Query: 117 DITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVR 176
DITN NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 61 DITNLNSFQQTSKWIDDVRTERGSDVIIML------------------------------ 90
Query: 177 TERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQ++TEEGE++AKELNVMFIETSAK GYNVKQ+
Sbjct: 91 -----------VGNKTDLADKRQITTEEGEQRAKELNVMFIETSAKTGYNVKQL 133
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 113/128 (88%), Positives = 120/128 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDST+AVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 27 RTVRLQLWDTAGQERFRSLIPSYIRDSTIAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 86
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQ++TEEGE++AKELNVMFIETSAK GYNVKQLFRRVAAALPGMDS
Sbjct: 87 IIMLVGNKTDLADKRQITTEEGEQRAKELNVMFIETSAKTGYNVKQLFRRVAAALPGMDS 146
Query: 348 TENKPPED 355
T K ED
Sbjct: 147 TPEKSKED 154
>gi|221043662|dbj|BAH13508.1| unnamed protein product [Homo sapiens]
Length = 175
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 124/174 (71%), Positives = 128/174 (73%), Gaps = 41/174 (23%)
Query: 57 MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY 116
MYDSFDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS AVVVY
Sbjct: 1 MYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY 60
Query: 117 DITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVR 176
DITN NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 61 DITNVNSFQQTTKWIDDVRTERGSDVIIML------------------------------ 90
Query: 177 TERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 91 -----------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 133
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 112/128 (87%), Positives = 120/128 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 27 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 86
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 87 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 146
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 147 TQDRSRED 154
>gi|344030204|ref|NP_001230648.1| ras-related protein Rab-6A isoform c [Homo sapiens]
gi|402894607|ref|XP_003910445.1| PREDICTED: ras-related protein Rab-6A [Papio anubis]
gi|410972689|ref|XP_003992790.1| PREDICTED: ras-related protein Rab-6A isoform 2 [Felis catus]
gi|441645568|ref|XP_004090672.1| PREDICTED: ras-related protein Rab-6A [Nomascus leucogenys]
Length = 175
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 124/174 (71%), Positives = 128/174 (73%), Gaps = 41/174 (23%)
Query: 57 MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY 116
MYDSFDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS AVVVY
Sbjct: 1 MYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY 60
Query: 117 DITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVR 176
DITN NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 61 DITNVNSFQQTTKWIDDVRTERGSDVIIML------------------------------ 90
Query: 177 TERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 91 -----------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 133
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 112/128 (87%), Positives = 120/128 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 27 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 86
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 87 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 146
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 147 TQDRSRED 154
>gi|226498830|ref|NP_001142363.1| hypothetical protein [Zea mays]
gi|194708444|gb|ACF88306.1| unknown [Zea mays]
gi|414886777|tpg|DAA62791.1| TPA: hypothetical protein ZEAMMB73_332722 [Zea mays]
Length = 208
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 130/222 (58%), Positives = 145/222 (65%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ L K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQAT
Sbjct: 5 SALAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+V+D+ + SF TS
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQSFLNTS 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWID+VRTERGSDVII+L V
Sbjct: 102 KWIDEVRTERGSDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQVS EEGE KAK+L VMFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVDKRQVSIEEGEGKAKDLGVMFIETSAKAGFNIKAL 162
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/128 (75%), Positives = 112/128 (87%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+V+D+ + SF TSKWID+VRTERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQSFLNTSKWIDEVRTERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL DKRQVS EEGE KAK+L VMFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 116 IIVLVGNKTDLVDKRQVSIEEGEGKAKDLGVMFIETSAKAGFNIKALFRKIAAALPGMET 175
Query: 348 TENKPPED 355
+ ED
Sbjct: 176 LSSAKQED 183
>gi|255640576|gb|ACU20573.1| unknown [Glycine max]
Length = 213
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 128/222 (57%), Positives = 146/222 (65%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ L K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQAT
Sbjct: 5 SALAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ + +F T+
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTA 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI++VRTERGSDVII+L V
Sbjct: 102 KWIEEVRTERGSDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL +KRQVS EEGE KA+ELNVMFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKAL 162
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 113/128 (88%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ + +F T+KWI++VRTERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTAKWIEEVRTERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL +KRQVS EEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 116 IIVLVGNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMET 175
Query: 348 TENKPPED 355
+ ED
Sbjct: 176 LSSAKQED 183
>gi|414886776|tpg|DAA62790.1| TPA: hypothetical protein ZEAMMB73_332722, partial [Zea mays]
Length = 249
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 130/222 (58%), Positives = 145/222 (65%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ L K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQAT
Sbjct: 5 SALAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+V+D+ + SF TS
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQSFLNTS 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWID+VRTERGSDVII+L V
Sbjct: 102 KWIDEVRTERGSDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQVS EEGE KAK+L VMFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVDKRQVSIEEGEGKAKDLGVMFIETSAKAGFNIKAL 162
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 96/128 (75%), Positives = 112/128 (87%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+V+D+ + SF TSKWID+VRTERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQSFLNTSKWIDEVRTERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL DKRQVS EEGE KAK+L VMFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 116 IIVLVGNKTDLVDKRQVSIEEGEGKAKDLGVMFIETSAKAGFNIKALFRKIAAALPGMET 175
Query: 348 TENKPPED 355
+ ED
Sbjct: 176 LSSAKQED 183
>gi|356541335|ref|XP_003539133.1| PREDICTED: LOW QUALITY PROTEIN: ras-related protein RABH1b-like
[Glycine max]
Length = 236
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 128/222 (57%), Positives = 146/222 (65%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ L K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQAT
Sbjct: 5 SALAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ + +F T+
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTA 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI++VRTERGSDVII+L V
Sbjct: 102 KWIEEVRTERGSDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL +KRQVS EEGE KA+ELNVMFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKAL 162
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 113/128 (88%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ + +F T+KWI++VRTERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTAKWIEEVRTERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL +KRQVS EEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 116 IIVLVGNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMET 175
Query: 348 TENKPPED 355
+ ED
Sbjct: 176 LSSAKQED 183
>gi|281211020|gb|EFA85186.1| Rab GTPase [Polysphondylium pallidum PN500]
Length = 487
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 130/220 (59%), Positives = 144/220 (65%), Gaps = 64/220 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K+KLVFLG+QSVGKTS+I TRFMYDSFD TYQATIG
Sbjct: 287 LSKYKLVFLGDQSVGKTSII-----------------------TRFMYDSFDITYQATIG 323
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VA+VVYDITN NSF T KW
Sbjct: 324 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDITNKNSFLNTIKW 383
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
IDDVR+ERG++V+IML VGN
Sbjct: 384 IDDVRSERGNNVVIML-----------------------------------------VGN 402
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
KTDL+DKRQVS EEGE KAKE +MF ETSAKAG+N+K +
Sbjct: 403 KTDLADKRQVSMEEGEAKAKEYEIMFTETSAKAGFNIKAL 442
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 94/120 (78%), Positives = 109/120 (90%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VA+VVYDITN NSF T KWIDDVR+ERG++V
Sbjct: 336 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDITNKNSFLNTIKWIDDVRSERGNNV 395
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+IMLVGNKTDL+DKRQVS EEGE KAKE +MF ETSAKAG+N+K LFR+VA+ALPG+D+
Sbjct: 396 VIMLVGNKTDLADKRQVSMEEGEAKAKEYEIMFTETSAKAGFNIKALFRKVASALPGIDT 455
>gi|449295568|gb|EMC91589.1| hypothetical protein BAUCODRAFT_79545 [Baudoinia compniacensis UAMH
10762]
Length = 206
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 128/228 (56%), Positives = 147/228 (64%), Gaps = 64/228 (28%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
M++S + NPL+KFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MAASSAYTNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FD+TYQATIGIDFLSKTMYL+DRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDIT+
Sbjct: 38 FDSTYQATIGIDFLSKTMYLDDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITS 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
SF Q KW+DDVR ERG DVII+L
Sbjct: 98 LKSFQQCRKWVDDVRGERGQDVIIVL---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDL +KR+VS + GE ++K+L +F+ETSAK G+NVK
Sbjct: 124 -------VGNKTDLGEKREVSVQMGEEESKKLGCLFVETSAKVGHNVK 164
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/120 (70%), Positives = 102/120 (85%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDIT+ SF Q KW+DDVR ERG DV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITSLKSFQQCRKWVDDVRGERGQDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL +KR+VS + GE ++K+L +F+ETSAK G+NVK LF+++A ALPGM+
Sbjct: 120 IIVLVGNKTDLGEKREVSVQMGEEESKKLGCLFVETSAKVGHNVKGLFKKIAQALPGMEG 179
>gi|356497062|ref|XP_003517383.1| PREDICTED: ras-related protein RABH1b-like [Glycine max]
Length = 207
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 128/222 (57%), Positives = 146/222 (65%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ L K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQAT
Sbjct: 5 SALAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ + +F T+
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTA 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI++VRTERGSDVII+L V
Sbjct: 102 KWIEEVRTERGSDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL +KRQVS EEGE KA+ELNVMFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKAL 162
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 113/128 (88%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ + +F T+KWI++VRTERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTAKWIEEVRTERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL +KRQVS EEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 116 IIVLVGNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMET 175
Query: 348 TENKPPED 355
+ ED
Sbjct: 176 LSSAKQED 183
>gi|168002794|ref|XP_001754098.1| Rab6/RabH-family small GTPase [Physcomitrella patens subsp. patens]
gi|162694652|gb|EDQ80999.1| Rab6/RabH-family small GTPase [Physcomitrella patens subsp. patens]
Length = 211
Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 126/222 (56%), Positives = 147/222 (66%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+PL K+KLVFLG+QSVGKTS+I TRFMYD FDN+YQAT
Sbjct: 11 SPLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNSYQAT 47
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD++N SF T+
Sbjct: 48 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVSNRQSFLNTA 107
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
+W+++VRTERG+DVI+ML V
Sbjct: 108 RWVEEVRTERGNDVIVML-----------------------------------------V 126
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQVS EEG+ KAKEL VMFIETS+KAG+N+K +
Sbjct: 127 GNKTDLVDKRQVSIEEGDAKAKELQVMFIETSSKAGFNIKAL 168
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 89/120 (74%), Positives = 109/120 (90%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD++N SF T++W+++VRTERG+DV
Sbjct: 62 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVSNRQSFLNTARWVEEVRTERGNDV 121
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
I+MLVGNKTDL DKRQVS EEG+ KAKEL VMFIETS+KAG+N+K LFR++A ALPGM++
Sbjct: 122 IVMLVGNKTDLVDKRQVSIEEGDAKAKELQVMFIETSSKAGFNIKALFRKIAVALPGMEA 181
>gi|58261886|ref|XP_568353.1| hypothetical protein CNM00590 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57230526|gb|AAW46836.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 213
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 134/229 (58%), Positives = 148/229 (64%), Gaps = 67/229 (29%)
Query: 3 SSGDFGN---PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYD 59
SS DF + PL+KFKLVFLGEQSVGKTSL ITRFMYD
Sbjct: 8 SSADFSSASTPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYD 44
Query: 60 SFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT 119
+FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA ERFRSLIPSYIRDS+VAV+VYDIT
Sbjct: 45 TFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTALFERFRSLIPSYIRDSSVAVIVYDIT 104
Query: 120 NANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTER 179
N SF TSKW+DDVR ERG DVII+L
Sbjct: 105 NRTSFQNTSKWVDDVRNERGQDVIIVL--------------------------------- 131
Query: 180 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDL+DKRQV+ E+ +++AKEL VM IETSAKAG+NVK
Sbjct: 132 --------VGNKTDLNDKRQVTPEDLDKRAKELGVMSIETSAKAGHNVK 172
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 87/117 (74%), Positives = 102/117 (87%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTA ERFRSLIPSYIRDS+VAV+VYDITN SF TSKW+DDVR ERG DV
Sbjct: 68 RTVRLQLWDTALFERFRSLIPSYIRDSSVAVIVYDITNRTSFQNTSKWVDDVRNERGQDV 127
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
II+LVGNKTDL+DKRQV+ E+ +++AKEL VM IETSAKAG+NVK LF+++A ALPG
Sbjct: 128 IIVLVGNKTDLNDKRQVTPEDLDKRAKELGVMSIETSAKAGHNVKTLFKKIAMALPG 184
>gi|224126375|ref|XP_002329538.1| predicted protein [Populus trichocarpa]
gi|222870247|gb|EEF07378.1| predicted protein [Populus trichocarpa]
Length = 208
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 128/222 (57%), Positives = 146/222 (65%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ L K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQAT
Sbjct: 5 SALAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS+VAV+V+D+ + SF TS
Sbjct: 42 IGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQSFLNTS 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI++VRTERGSDVII+L V
Sbjct: 102 KWIEEVRTERGSDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL +KRQVS EEGE KA+ELNVMFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKPL 162
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 113/128 (88%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS+VAV+V+D+ + SF TSKWI++VRTERGSDV
Sbjct: 56 RTIRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQSFLNTSKWIEEVRTERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL +KRQVS EEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 116 IIVLVGNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKPLFRKIAAALPGMEA 175
Query: 348 TENKPPED 355
+ ED
Sbjct: 176 LSSTKQED 183
>gi|393245652|gb|EJD53162.1| GTP binding protein [Auricularia delicata TFB-10046 SS5]
Length = 214
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 129/229 (56%), Positives = 149/229 (65%), Gaps = 65/229 (28%)
Query: 3 SSGDFGN-PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
++ DF + PL++ K+V LG+QSVGKTSL ITRFMYD+F
Sbjct: 8 ATADFSSSPLKRTKIVLLGDQSVGKTSL-----------------------ITRFMYDTF 44
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VA+VV+DITN
Sbjct: 45 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVFDITNR 104
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF T+KWIDDVR+ERGSDVII+L
Sbjct: 105 ASFLSTTKWIDDVRSERGSDVIIVL----------------------------------- 129
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNK DLSDKRQV+ EE KA E+N+MF+ETSAKAG+NVK +
Sbjct: 130 ------VGNKADLSDKRQVTHEEATNKATEMNIMFMETSAKAGHNVKSL 172
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 88/119 (73%), Positives = 106/119 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VA+VV+DITN SF T+KWIDDVR+ERGSDV
Sbjct: 66 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVFDITNRASFLSTTKWIDDVRSERGSDV 125
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II+LVGNK DLSDKRQV+ EE KA E+N+MF+ETSAKAG+NVK LF+++A +LPG++
Sbjct: 126 IIVLVGNKADLSDKRQVTHEEATNKATEMNIMFMETSAKAGHNVKSLFKKIAMSLPGVE 184
>gi|224067425|ref|XP_002302484.1| predicted protein [Populus trichocarpa]
gi|222844210|gb|EEE81757.1| predicted protein [Populus trichocarpa]
Length = 208
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 128/222 (57%), Positives = 146/222 (65%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ L K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQAT
Sbjct: 5 SALAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+V+D+ + SF TS
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQSFLNTS 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI++VR+ERGSDVII+L V
Sbjct: 102 KWIEEVRSERGSDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQVS EEGE KA++LNVMFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVDKRQVSIEEGEAKARDLNVMFIETSAKAGFNIKAL 162
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 113/128 (88%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+V+D+ + SF TSKWI++VR+ERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQSFLNTSKWIEEVRSERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL DKRQVS EEGE KA++LNVMFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 116 IIVLVGNKTDLVDKRQVSIEEGEAKARDLNVMFIETSAKAGFNIKALFRKIAAALPGMET 175
Query: 348 TENKPPED 355
+ ED
Sbjct: 176 LSSSKQED 183
>gi|357116841|ref|XP_003560185.1| PREDICTED: ras-related protein RABH1b-like [Brachypodium
distachyon]
Length = 293
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 129/220 (58%), Positives = 144/220 (65%), Gaps = 64/220 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQATIG
Sbjct: 92 LAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQATIG 128
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+V+D+ + SF TSKW
Sbjct: 129 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQSFLNTSKW 188
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
I++VRTERGSDVII+L VGN
Sbjct: 189 IEEVRTERGSDVIIVL-----------------------------------------VGN 207
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
KTDL DKRQVS EEGE KAK+L VMFIETSAKAG+N+K +
Sbjct: 208 KTDLVDKRQVSIEEGEGKAKDLGVMFIETSAKAGFNIKAL 247
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 95/128 (74%), Positives = 112/128 (87%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+V+D+ + SF TSKWI++VRTERGSDV
Sbjct: 141 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQSFLNTSKWIEEVRTERGSDV 200
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL DKRQVS EEGE KAK+L VMFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 201 IIVLVGNKTDLVDKRQVSIEEGEGKAKDLGVMFIETSAKAGFNIKALFRKIAAALPGMET 260
Query: 348 TENKPPED 355
+ ED
Sbjct: 261 LSSAKQED 268
>gi|302769738|ref|XP_002968288.1| rab family GTPase [Selaginella moellendorffii]
gi|302788640|ref|XP_002976089.1| rab family GTPase [Selaginella moellendorffii]
gi|300156365|gb|EFJ22994.1| rab family GTPase [Selaginella moellendorffii]
gi|300163932|gb|EFJ30542.1| rab family GTPase [Selaginella moellendorffii]
Length = 209
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 127/222 (57%), Positives = 145/222 (65%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+PL K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQAT
Sbjct: 9 SPLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQAT 45
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD+ N SF T+
Sbjct: 46 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVANRQSFLNTA 105
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
+W+++VRTERGSDVII+L V
Sbjct: 106 RWVEEVRTERGSDVIIVL-----------------------------------------V 124
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQVS EEG+ KA+E VM+IETSAKAG+N+K +
Sbjct: 125 GNKTDLVDKRQVSIEEGDAKAREFGVMYIETSAKAGFNIKAL 166
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 111/128 (86%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD+ N SF T++W+++VRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVANRQSFLNTARWVEEVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL DKRQVS EEG+ KA+E VM+IETSAKAG+N+K LFR++AAALPGM++
Sbjct: 120 IIVLVGNKTDLVDKRQVSIEEGDAKAREFGVMYIETSAKAGFNIKALFRKIAAALPGMEA 179
Query: 348 TENKPPED 355
+ ED
Sbjct: 180 LSSAKQED 187
>gi|116785433|gb|ABK23720.1| unknown [Picea sitchensis]
Length = 207
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 127/222 (57%), Positives = 145/222 (65%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+PL K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQAT
Sbjct: 5 SPLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+V+D+ N SF T+
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVANRQSFLNTA 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
+WI++VRTERGSDVII+L V
Sbjct: 102 RWIEEVRTERGSDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQVS EEG+ KA+E VMFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVDKRQVSIEEGDAKAREFGVMFIETSAKAGFNIKAL 162
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 111/128 (86%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+V+D+ N SF T++WI++VRTERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVANRQSFLNTARWIEEVRTERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL DKRQVS EEG+ KA+E VMFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 116 IIVLVGNKTDLVDKRQVSIEEGDAKAREFGVMFIETSAKAGFNIKALFRKIAAALPGMET 175
Query: 348 TENKPPED 355
+ ED
Sbjct: 176 LSSTKQED 183
>gi|221042816|dbj|BAH13085.1| unnamed protein product [Homo sapiens]
Length = 144
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 115/128 (89%), Positives = 122/128 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 6 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 65
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 66 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 125
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 126 TQDRSRED 133
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 106/153 (69%), Positives = 109/153 (71%), Gaps = 41/153 (26%)
Query: 78 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE 137
MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTE
Sbjct: 1 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTE 60
Query: 138 RGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 197
RGSDVIIML VGNKTDL+DK
Sbjct: 61 RGSDVIIML-----------------------------------------VGNKTDLADK 79
Query: 198 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
RQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 80 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 112
>gi|164655602|ref|XP_001728930.1| hypothetical protein MGL_3924 [Malassezia globosa CBS 7966]
gi|159102818|gb|EDP41716.1| hypothetical protein MGL_3924 [Malassezia globosa CBS 7966]
Length = 223
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 130/227 (57%), Positives = 148/227 (65%), Gaps = 65/227 (28%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
S D+ + +RKFKLVFLGEQSVGKTSL ITRFMYD+F
Sbjct: 5 SGGSDYSSAMRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDTF 41
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
D YQATIGIDFLSKTMYL+DRTVRLQLWDTAGQERFRSLIPSYIRDS+VA+VVYD+TN
Sbjct: 42 DGNYQATIGIDFLSKTMYLDDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDVTNR 101
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF TSKW++DVR ERG++VII L
Sbjct: 102 ESFKSTSKWVEDVRAERGNEVIIAL----------------------------------- 126
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKEL-NVMFIETSAKAGYNV 227
VGNKTDL+DKR+VSTEEGE++AKE NVMF+ETSAKAG+NV
Sbjct: 127 ------VGNKTDLNDKREVSTEEGEQRAKEYNNVMFLETSAKAGHNV 167
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 89/118 (75%), Positives = 106/118 (89%), Gaps = 1/118 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VA+VVYD+TN SF TSKW++DVR ERG++V
Sbjct: 63 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDVTNRESFKSTSKWVEDVRAERGNEV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKEL-NVMFIETSAKAGYNVKQLFRRVAAALPG 344
II LVGNKTDL+DKR+VSTEEGE++AKE NVMF+ETSAKAG+NV LF+++A ALPG
Sbjct: 123 IIALVGNKTDLNDKREVSTEEGEQRAKEYNNVMFLETSAKAGHNVMPLFKKIAQALPG 180
>gi|395546267|ref|XP_003775011.1| PREDICTED: ras-related protein Rab-6.1-like [Sarcophilus harrisii]
Length = 334
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 124/213 (58%), Positives = 143/213 (67%), Gaps = 42/213 (19%)
Query: 18 FLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKT 77
LGE + +S T + Q + VGKTSLITRF+YDSFDN YQATIGIDFLSKT
Sbjct: 7 LLGEAPLSSSSE-TPYFNRVLSPGLQMSPVGKTSLITRFVYDSFDNNYQATIGIDFLSKT 65
Query: 78 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE 137
MYLEDR++RLQLWDTAGQERFRSLIPSYIRDSTVA++VYDITN N+F+QT++WI +VRTE
Sbjct: 66 MYLEDRSIRLQLWDTAGQERFRSLIPSYIRDSTVAIIVYDITNINTFYQTTRWIREVRTE 125
Query: 138 RGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 197
RG D+IIML VGNK DL K
Sbjct: 126 RGGDIIIML-----------------------------------------VGNKNDLGHK 144
Query: 198 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
R+VS EEG++KAK+LNVMFIETSAK GYNVKQ
Sbjct: 145 REVSPEEGKQKAKDLNVMFIETSAKTGYNVKQA 177
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/130 (69%), Positives = 107/130 (82%), Gaps = 9/130 (6%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDSTVA++VYDITN N+F+QT++WI +VRTERG D+
Sbjct: 71 RSIRLQLWDTAGQERFRSLIPSYIRDSTVAIIVYDITNINTFYQTTRWIREVRTERGGDI 130
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV---AAALPG 344
IIMLVGNK DL KR+VS EEG++KAK+LNVMFIETSAK GYNVKQ R+ AA PG
Sbjct: 131 IIMLVGNKNDLGHKREVSPEEGKQKAKDLNVMFIETSAKTGYNVKQASDRLRVRAARKPG 190
Query: 345 MDSTENKPPE 354
+PP+
Sbjct: 191 ------QPPD 194
>gi|353236471|emb|CCA68465.1| probable YPT6-GTP-binding protein of the rab family [Piriformospora
indica DSM 11827]
Length = 219
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 130/228 (57%), Positives = 148/228 (64%), Gaps = 65/228 (28%)
Query: 4 SGDF-GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
+ DF +PL++ K+V LG+QSVGKTSL ITRFMYD+FD
Sbjct: 9 TADFTSSPLKRTKIVLLGDQSVGKTSL-----------------------ITRFMYDTFD 45
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VA+VVYDITN
Sbjct: 46 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDITNRA 105
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF TSKWIDDVR+ERG+DVII+L
Sbjct: 106 SFLSTSKWIDDVRSERGNDVIIVL------------------------------------ 129
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNK DLSDKRQV+ EE KA +LN+MF+ETSAKAG+NVK +
Sbjct: 130 -----VGNKADLSDKRQVTHEEASTKATQLNLMFMETSAKAGHNVKSL 172
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 92/119 (77%), Positives = 106/119 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VA+VVYDITN SF TSKWIDDVR+ERG+DV
Sbjct: 66 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDITNRASFLSTSKWIDDVRSERGNDV 125
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II+LVGNK DLSDKRQV+ EE KA +LN+MF+ETSAKAG+NVK LF+++A ALPGMD
Sbjct: 126 IIVLVGNKADLSDKRQVTHEEASTKATQLNLMFMETSAKAGHNVKSLFKKIAMALPGMD 184
>gi|255072909|ref|XP_002500129.1| ras-related gtp-binding protein, alternative splice [Micromonas sp.
RCC299]
gi|226515391|gb|ACO61387.1| ras-related gtp-binding protein, alternative splice [Micromonas sp.
RCC299]
Length = 204
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 125/222 (56%), Positives = 147/222 (66%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
P+ K+KLVFLG+QSVGKTS+I +RFMYD FDN+YQAT
Sbjct: 5 TPMAKYKLVFLGDQSVGKTSII-----------------------SRFMYDKFDNSYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD+++ +SF TS
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSSRSSFANTS 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
+WID+VRTERGSDVI++L V
Sbjct: 102 RWIDEVRTERGSDVIVVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL+DKR+VS EEG+ +A+E VMFIETSAKAG+NVK +
Sbjct: 121 GNKTDLTDKREVSVEEGDARAREAGVMFIETSAKAGFNVKAL 162
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 91/120 (75%), Positives = 111/120 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD+++ +SF TS+WID+VRTERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSSRSSFANTSRWIDEVRTERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
I++LVGNKTDL+DKR+VS EEG+ +A+E VMFIETSAKAG+NVK LFR++AAALPGM++
Sbjct: 116 IVVLVGNKTDLTDKREVSVEEGDARAREAGVMFIETSAKAGFNVKALFRKIAAALPGMEA 175
>gi|388498202|gb|AFK37167.1| unknown [Medicago truncatula]
Length = 206
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 127/222 (57%), Positives = 147/222 (66%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ L K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQAT
Sbjct: 5 SALAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ + +F TS
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTS 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI++VR+ERGSDVI++L V
Sbjct: 102 KWIEEVRSERGSDVIVVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL +KRQVSTEEGE K++ELNVMFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVEKRQVSTEEGEAKSRELNVMFIETSAKAGFNIKAL 162
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 113/128 (88%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ + +F TSKWI++VR+ERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTSKWIEEVRSERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
I++LVGNKTDL +KRQVSTEEGE K++ELNVMFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 116 IVVLVGNKTDLVEKRQVSTEEGEAKSRELNVMFIETSAKAGFNIKALFRKIAAALPGMET 175
Query: 348 TENKPPED 355
ED
Sbjct: 176 LSTTKQED 183
>gi|226501020|ref|NP_001150271.1| ras-related protein Rab-6A [Zea mays]
gi|242045718|ref|XP_002460730.1| hypothetical protein SORBIDRAFT_02g033930 [Sorghum bicolor]
gi|194701460|gb|ACF84814.1| unknown [Zea mays]
gi|195637990|gb|ACG38463.1| ras-related protein Rab-6A [Zea mays]
gi|241924107|gb|EER97251.1| hypothetical protein SORBIDRAFT_02g033930 [Sorghum bicolor]
gi|414590332|tpg|DAA40903.1| TPA: Ras protein Rab-6A [Zea mays]
Length = 208
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 129/222 (58%), Positives = 145/222 (65%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ L K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQAT
Sbjct: 5 SALAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+V+D+ + SF TS
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQSFLNTS 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI++VRTERGSDVII+L V
Sbjct: 102 KWIEEVRTERGSDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQVS EEGE KAK+L VMFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVDKRQVSIEEGEGKAKDLGVMFIETSAKAGFNIKAL 162
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 95/128 (74%), Positives = 112/128 (87%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+V+D+ + SF TSKWI++VRTERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQSFLNTSKWIEEVRTERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL DKRQVS EEGE KAK+L VMFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 116 IIVLVGNKTDLVDKRQVSIEEGEGKAKDLGVMFIETSAKAGFNIKALFRKIAAALPGMET 175
Query: 348 TENKPPED 355
+ ED
Sbjct: 176 LSSAKQED 183
>gi|357482281|ref|XP_003611426.1| Ras-related protein Rab-6 [Medicago truncatula]
gi|355512761|gb|AES94384.1| Ras-related protein Rab-6 [Medicago truncatula]
Length = 226
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 127/222 (57%), Positives = 146/222 (65%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ L K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQAT
Sbjct: 5 SALAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ + +F T+
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTT 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI++VRTERGSDVII+L V
Sbjct: 102 KWIEEVRTERGSDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL +KRQVS E+GE KA+ELNVMFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVEKRQVSIEDGEAKARELNVMFIETSAKAGFNIKAL 162
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 113/128 (88%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ + +F T+KWI++VRTERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTTKWIEEVRTERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL +KRQVS E+GE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 116 IIVLVGNKTDLVEKRQVSIEDGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMET 175
Query: 348 TENKPPED 355
+ ED
Sbjct: 176 LSSAKQED 183
>gi|255575776|ref|XP_002528787.1| protein with unknown function [Ricinus communis]
gi|223531790|gb|EEF33609.1| protein with unknown function [Ricinus communis]
Length = 208
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 127/222 (57%), Positives = 146/222 (65%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ L K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQAT
Sbjct: 5 SALAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+V+D+ + +F TS
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQTFLNTS 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI++VRTERGSDVII+L V
Sbjct: 102 KWIEEVRTERGSDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL +KRQVS EEGE KA++LNVMFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVEKRQVSIEEGEAKARDLNVMFIETSAKAGFNIKAL 162
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 113/128 (88%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+V+D+ + +F TSKWI++VRTERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQTFLNTSKWIEEVRTERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL +KRQVS EEGE KA++LNVMFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 116 IIVLVGNKTDLVEKRQVSIEEGEAKARDLNVMFIETSAKAGFNIKALFRKIAAALPGMET 175
Query: 348 TENKPPED 355
+ ED
Sbjct: 176 LSSTKQED 183
>gi|356563429|ref|XP_003549965.1| PREDICTED: LOW QUALITY PROTEIN: ras-related protein RABH1b-like
[Glycine max]
Length = 213
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 127/222 (57%), Positives = 146/222 (65%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ L K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQAT
Sbjct: 5 SALAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ + +F TS
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTS 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI++VR+ERGSDVI++L V
Sbjct: 102 KWIEEVRSERGSDVIVVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQVSTEEGE K++ELNVMFIE SAKAG+N+K +
Sbjct: 121 GNKTDLVDKRQVSTEEGEAKSRELNVMFIEASAKAGFNIKAL 162
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 112/128 (87%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ + +F TSKWI++VR+ERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTSKWIEEVRSERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
I++LVGNKTDL DKRQVSTEEGE K++ELNVMFIE SAKAG+N+K LFR++AAALPGM++
Sbjct: 116 IVVLVGNKTDLVDKRQVSTEEGEAKSRELNVMFIEASAKAGFNIKALFRKIAAALPGMET 175
Query: 348 TENKPPED 355
ED
Sbjct: 176 LSTTKQED 183
>gi|623586|gb|AAA74117.1| putative [Nicotiana tabacum]
Length = 208
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 128/222 (57%), Positives = 144/222 (64%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ L K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQAT
Sbjct: 5 SALAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTV LQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ + SF TS
Sbjct: 42 IGIDFLSKTMYLEDRTVALQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTS 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI++VRTERGSDVII+L V
Sbjct: 102 KWIEEVRTERGSDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL +KRQVS EE E KA+ELNVMFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVEKRQVSIEEAEAKARELNVMFIETSAKAGFNIKPL 162
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 111/128 (86%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ V LQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ + SF TSKWI++VRTERGSDV
Sbjct: 56 RTVALQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTSKWIEEVRTERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL +KRQVS EE E KA+ELNVMFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 116 IIVLVGNKTDLVEKRQVSIEEAEAKARELNVMFIETSAKAGFNIKPLFRKIAAALPGMET 175
Query: 348 TENKPPED 355
+ ED
Sbjct: 176 LSSAKQED 183
>gi|356497064|ref|XP_003517384.1| PREDICTED: ras-related protein RABH1b-like [Glycine max]
Length = 206
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 127/222 (57%), Positives = 145/222 (65%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ L K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQAT
Sbjct: 5 SALAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+ YD+ + +F TS
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIAYDVASRQTFLNTS 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI++VR+ERGSDVII+L V
Sbjct: 102 KWIEEVRSERGSDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQVSTEEGE K++ELNVMFIE SAKAG+N+K +
Sbjct: 121 GNKTDLVDKRQVSTEEGEAKSRELNVMFIEASAKAGFNIKAL 162
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 112/128 (87%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+ YD+ + +F TSKWI++VR+ERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIAYDVASRQTFLNTSKWIEEVRSERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL DKRQVSTEEGE K++ELNVMFIE SAKAG+N+K LFR++AAALPGM++
Sbjct: 116 IIVLVGNKTDLVDKRQVSTEEGEAKSRELNVMFIEASAKAGFNIKALFRKIAAALPGMET 175
Query: 348 TENKPPED 355
+ ED
Sbjct: 176 LSSTKQED 183
>gi|115472201|ref|NP_001059699.1| Os07g0496000 [Oryza sativa Japonica Group]
gi|24059912|dbj|BAC21376.1| GTP-binding protein Rab6 [Oryza sativa Japonica Group]
gi|113611235|dbj|BAF21613.1| Os07g0496000 [Oryza sativa Japonica Group]
Length = 208
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 129/222 (58%), Positives = 145/222 (65%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ L K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQAT
Sbjct: 5 SALAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+V+D+ + SF TS
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQSFLNTS 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI++VRTERGSDVII+L V
Sbjct: 102 KWIEEVRTERGSDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQVS EEGE KAK+L VMFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVDKRQVSIEEGEGKAKDLGVMFIETSAKAGFNIKAL 162
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 95/128 (74%), Positives = 112/128 (87%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+V+D+ + SF TSKWI++VRTERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQSFLNTSKWIEEVRTERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL DKRQVS EEGE KAK+L VMFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 116 IIVLVGNKTDLVDKRQVSIEEGEGKAKDLGVMFIETSAKAGFNIKALFRKIAAALPGMET 175
Query: 348 TENKPPED 355
+ ED
Sbjct: 176 LSSAKQED 183
>gi|351723117|ref|NP_001235476.1| uncharacterized protein LOC100527651 [Glycine max]
gi|255632858|gb|ACU16782.1| unknown [Glycine max]
Length = 213
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 127/222 (57%), Positives = 146/222 (65%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ L K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQAT
Sbjct: 5 SALAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ + +F TS
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTS 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI++VR+ERGSDVI++L V
Sbjct: 102 KWIEEVRSERGSDVIVVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQVSTEEGE K++ELNVMFIE SAKAG+N+K +
Sbjct: 121 GNKTDLVDKRQVSTEEGEAKSRELNVMFIEASAKAGFNIKAL 162
Score = 200 bits (508), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 111/128 (86%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ + +F TSKWI++VR+ERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTSKWIEEVRSERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
I++LVGNKTDL DKRQVSTEEGE K++ELNVMFIE SAKAG+N+K LFR++ AALPGM++
Sbjct: 116 IVVLVGNKTDLVDKRQVSTEEGEAKSRELNVMFIEASAKAGFNIKALFRKIDAALPGMET 175
Query: 348 TENKPPED 355
ED
Sbjct: 176 LSTTKQED 183
>gi|145357850|ref|NP_196588.3| RAB GTPase H1E [Arabidopsis thaliana]
gi|75334962|sp|Q9LFT9.1|RAH1E_ARATH RecName: Full=Ras-related protein RABH1e; Short=AtRABH1e
gi|8953407|emb|CAB96682.1| GTP-binding protein [Arabidopsis thaliana]
gi|332004131|gb|AED91514.1| RAB GTPase H1E [Arabidopsis thaliana]
Length = 207
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 128/222 (57%), Positives = 144/222 (64%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+PL K+KLVFLG+QSVGKTS+I TRFMYD FD TYQAT
Sbjct: 5 SPLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDTTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ N SF TS
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTS 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI+DVRTERGSDVII+L V
Sbjct: 102 KWIEDVRTERGSDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQVS EEG+ KA++ V+FIETSAKAG+N+K +
Sbjct: 121 GNKTDLVDKRQVSIEEGDNKARDYGVIFIETSAKAGFNIKPL 162
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 111/128 (86%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ N SF TSKWI+DVRTERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSKWIEDVRTERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL DKRQVS EEG+ KA++ V+FIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 116 IIVLVGNKTDLVDKRQVSIEEGDNKARDYGVIFIETSAKAGFNIKPLFRKIAAALPGMET 175
Query: 348 TENKPPED 355
+ ED
Sbjct: 176 LSSTKQED 183
>gi|307104270|gb|EFN52525.1| GTP binding protein [Chlorella variabilis]
Length = 211
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 127/222 (57%), Positives = 143/222 (64%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
PL K+KLVFLG+QSVGKTS+I TRFMYD FD TYQAT
Sbjct: 7 QPLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDTTYQAT 43
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD+T+ SF
Sbjct: 44 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVTSRQSFLNIQ 103
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
+W+++VR ERGSDVII+L V
Sbjct: 104 RWVEEVRAERGSDVIIVL-----------------------------------------V 122
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQVS EEG+ KA+ELNVMFIETSAKAG+N+K +
Sbjct: 123 GNKTDLVDKRQVSIEEGDAKARELNVMFIETSAKAGFNIKAL 164
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 111/128 (86%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD+T+ SF +W+++VR ERGSDV
Sbjct: 58 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVTSRQSFLNIQRWVEEVRAERGSDV 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL DKRQVS EEG+ KA+ELNVMFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 118 IIVLVGNKTDLVDKRQVSIEEGDAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMEA 177
Query: 348 TENKPPED 355
+ ED
Sbjct: 178 LNSAKQED 185
>gi|299753222|ref|XP_001833137.2| ryh1 [Coprinopsis cinerea okayama7#130]
gi|298410200|gb|EAU88826.2| ryh1 [Coprinopsis cinerea okayama7#130]
Length = 214
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 129/230 (56%), Positives = 148/230 (64%), Gaps = 65/230 (28%)
Query: 2 SSSGDFGN-PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
S S DF + P ++ K+V LG+QSVGKTSL ITRFMYD+
Sbjct: 8 SPSTDFSSAPPKRTKIVLLGDQSVGKTSL-----------------------ITRFMYDT 44
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VA+VV+DITN
Sbjct: 45 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVFDITN 104
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
SF T+KWIDDVR+ERG+DVII+L
Sbjct: 105 RQSFLSTTKWIDDVRSERGNDVIIVL---------------------------------- 130
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNK DLSDKRQV+ EE KA +LN+MF+ETSAKAG+NVK +
Sbjct: 131 -------VGNKADLSDKRQVTVEEATTKATQLNIMFMETSAKAGHNVKSL 173
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 88/119 (73%), Positives = 106/119 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VA+VV+DITN SF T+KWIDDVR+ERG+DV
Sbjct: 67 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVFDITNRQSFLSTTKWIDDVRSERGNDV 126
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II+LVGNK DLSDKRQV+ EE KA +LN+MF+ETSAKAG+NVK LF+++A +LPGM+
Sbjct: 127 IIVLVGNKADLSDKRQVTVEEATTKATQLNIMFMETSAKAGHNVKSLFKKIAMSLPGME 185
>gi|297807057|ref|XP_002871412.1| hypothetical protein ARALYDRAFT_487852 [Arabidopsis lyrata subsp.
lyrata]
gi|297317249|gb|EFH47671.1| hypothetical protein ARALYDRAFT_487852 [Arabidopsis lyrata subsp.
lyrata]
Length = 207
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 128/222 (57%), Positives = 144/222 (64%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+PL K+KLVFLG+QSVGKTS+I TRFMYD FD TYQAT
Sbjct: 5 SPLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDTTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ N SF TS
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTS 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI+DVRTERGSDVII+L V
Sbjct: 102 KWIEDVRTERGSDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQVS EEG+ KA++ V+FIETSAKAG+N+K +
Sbjct: 121 GNKTDLVDKRQVSIEEGDNKARDYGVIFIETSAKAGFNIKPL 162
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 111/128 (86%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ N SF TSKWI+DVRTERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSKWIEDVRTERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL DKRQVS EEG+ KA++ V+FIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 116 IIVLVGNKTDLVDKRQVSIEEGDNKARDYGVIFIETSAKAGFNIKPLFRKIAAALPGMET 175
Query: 348 TENKPPED 355
+ ED
Sbjct: 176 LSSTKQED 183
>gi|325188888|emb|CCA23418.1| Rab6 family GTPase putative [Albugo laibachii Nc14]
Length = 248
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 126/225 (56%), Positives = 144/225 (64%), Gaps = 64/225 (28%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
PL K+K+VFLG+Q VGKTS+ ITRFMYD+FDN YQATI
Sbjct: 49 PLSKYKIVFLGDQGVGKTSM-----------------------ITRFMYDTFDNAYQATI 85
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
GIDFLSKTMY+EDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN SF T K
Sbjct: 86 GIDFLSKTMYMEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTIK 145
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
WI+DVRTERG DV+IML VG
Sbjct: 146 WIEDVRTERGQDVVIML-----------------------------------------VG 164
Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NKTD+SD+RQV+ EEG KA + NV+FIE+SAKAGYN+K + +L
Sbjct: 165 NKTDISDRRQVTVEEGTEKATQENVLFIESSAKAGYNIKPLFRKL 209
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 91/123 (73%), Positives = 106/123 (86%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN SF T KWI+DVRTERG DV
Sbjct: 99 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTIKWIEDVRTERGQDV 158
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+IMLVGNKTD+SD+RQV+ EEG KA + NV+FIE+SAKAGYN+K LFR++A LPGM++
Sbjct: 159 VIMLVGNKTDISDRRQVTVEEGTEKATQENVLFIESSAKAGYNIKPLFRKLAVMLPGMEN 218
Query: 348 TEN 350
N
Sbjct: 219 ATN 221
>gi|358338307|dbj|GAA56637.1| Ras-related protein Rab-6.2 [Clonorchis sinensis]
Length = 336
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 125/200 (62%), Positives = 139/200 (69%), Gaps = 41/200 (20%)
Query: 31 TRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90
T ++ + + A GKTSLITRFMY++FD+ YQATIGIDFLSKTMYLEDRT+RLQLW
Sbjct: 111 TPLLFLAVRSCADALSFGKTSLITRFMYETFDSVYQATIGIDFLSKTMYLEDRTIRLQLW 170
Query: 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSI 150
DTAGQERFRSLIPSYIRDS+VAVVVYDI SF QT+KWIDDVR ERGSDVIIML
Sbjct: 171 DTAGQERFRSLIPSYIRDSSVAVVVYDICVVESFQQTAKWIDDVRNERGSDVIIML---- 226
Query: 151 ETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK 210
VGNKTDLSDKR+V+TEEGER A+
Sbjct: 227 -------------------------------------VGNKTDLSDKRKVTTEEGERLAR 249
Query: 211 ELNVMFIETSAKAGYNVKQV 230
+LNVMFIETSAKAGYNVK V
Sbjct: 250 DLNVMFIETSAKAGYNVKVV 269
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 89/105 (84%), Positives = 97/105 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI SF QT+KWIDDVR ERGSDV
Sbjct: 163 RTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDICVVESFQQTAKWIDDVRNERGSDV 222
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 332
IIMLVGNKTDLSDKR+V+TEEGER A++LNVMFIETSAKAGYNVK
Sbjct: 223 IIMLVGNKTDLSDKRKVTTEEGERLARDLNVMFIETSAKAGYNVK 267
>gi|392567066|gb|EIW60241.1| ras-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 214
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 127/228 (55%), Positives = 147/228 (64%), Gaps = 65/228 (28%)
Query: 4 SGDFGNP-LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
+ DF +P L++ K+V LG+QSVGKTSL ITRFMYD+FD
Sbjct: 8 TADFSSPPLKRSKIVLLGDQSVGKTSL-----------------------ITRFMYDTFD 44
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
NTYQATIGIDFLSK MYLEDRTVRLQLWDTAGQER+RSLIPSYIRD +VA+VV+DITN
Sbjct: 45 NTYQATIGIDFLSKAMYLEDRTVRLQLWDTAGQERYRSLIPSYIRDCSVAIVVFDITNRQ 104
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF TSKWIDDVR+ERG+DVII+L
Sbjct: 105 SFLSTSKWIDDVRSERGNDVIIVL------------------------------------ 128
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNK DLSDKRQV+ EE KA+ELN+MF+ETSAKAG+NVK +
Sbjct: 129 -----VGNKADLSDKRQVTLEEANAKAQELNIMFMETSAKAGHNVKSL 171
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/119 (73%), Positives = 105/119 (88%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQER+RSLIPSYIRD +VA+VV+DITN SF TSKWIDDVR+ERG+DV
Sbjct: 65 RTVRLQLWDTAGQERYRSLIPSYIRDCSVAIVVFDITNRQSFLSTSKWIDDVRSERGNDV 124
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II+LVGNK DLSDKRQV+ EE KA+ELN+MF+ETSAKAG+NVK LF+++A +L GM+
Sbjct: 125 IIVLVGNKADLSDKRQVTLEEANAKAQELNIMFMETSAKAGHNVKSLFKKIAMSLVGME 183
>gi|390597749|gb|EIN07148.1| GTP binding protein [Punctularia strigosozonata HHB-11173 SS5]
Length = 214
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 128/229 (55%), Positives = 149/229 (65%), Gaps = 65/229 (28%)
Query: 3 SSGDFGN-PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
++ DF + P ++ K+V LG+QSVGKTSL ITRFMYD+F
Sbjct: 8 TTADFSSAPPKRTKIVLLGDQSVGKTSL-----------------------ITRFMYDTF 44
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VA+VV+DITN
Sbjct: 45 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVFDITNR 104
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF TSKWIDDVR+ERG+DVII+L
Sbjct: 105 ASFLSTSKWIDDVRSERGNDVIIVL----------------------------------- 129
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNK DLSDKRQV+ EE K++E+NVMF+ETSAKAG+NVK +
Sbjct: 130 ------VGNKADLSDKRQVTLEEATTKSQEMNVMFMETSAKAGHNVKSL 172
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 91/124 (73%), Positives = 110/124 (88%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VA+VV+DITN SF TSKWIDDVR+ERG+DV
Sbjct: 66 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVFDITNRASFLSTSKWIDDVRSERGNDV 125
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNK DLSDKRQV+ EE K++E+NVMF+ETSAKAG+NVK LF+++A +LPGM+S
Sbjct: 126 IIVLVGNKADLSDKRQVTLEEATTKSQEMNVMFMETSAKAGHNVKSLFKKIAMSLPGMES 185
Query: 348 TENK 351
+K
Sbjct: 186 QADK 189
>gi|336265072|ref|XP_003347310.1| hypothetical protein SMAC_07167 [Sordaria macrospora k-hell]
gi|380088515|emb|CCC13542.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 232
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 132/244 (54%), Positives = 148/244 (60%), Gaps = 82/244 (33%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
+ G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSFD
Sbjct: 4 AGGSYNNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFD 40
Query: 63 NTYQATIGIDFLSK------------------TMYLEDRTVRLQLWDTAGQERFRSLIPS 104
N YQATIGIDFLSK TMYLEDRTVRLQLWDTAGQERFRSLIPS
Sbjct: 41 NMYQATIGIDFLSKACSTPLDRAAPEGHNGRRTMYLEDRTVRLQLWDTAGQERFRSLIPS 100
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
YIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DVII+L
Sbjct: 101 YIRDSSVAVVVYDISNAKSFQNTRKWIDDVRAERGNDVIIVL------------------ 142
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
VGNKTDL+DKR+V+T +GE +A+ N+MF+ETSAK G
Sbjct: 143 -----------------------VGNKTDLNDKREVTTAQGEEEARRNNLMFVETSAKLG 179
Query: 225 YNVK 228
+NVK
Sbjct: 180 HNVK 183
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 90/135 (66%), Positives = 111/135 (82%), Gaps = 8/135 (5%)
Query: 217 IETSAKAGYNVKQ--------VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 268
++ +A G+N ++ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA S
Sbjct: 60 LDRAAPEGHNGRRTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKS 119
Query: 269 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 328
F T KWIDDVR ERG+DVII+LVGNKTDL+DKR+V+T +GE +A+ N+MF+ETSAK G
Sbjct: 120 FQNTRKWIDDVRAERGNDVIIVLVGNKTDLNDKREVTTAQGEEEARRNNLMFVETSAKLG 179
Query: 329 YNVKQLFRRVAAALP 343
+NVK LF+R+A ALP
Sbjct: 180 HNVKTLFKRIAQALP 194
>gi|224083679|ref|XP_002307084.1| predicted protein [Populus trichocarpa]
gi|222856533|gb|EEE94080.1| predicted protein [Populus trichocarpa]
Length = 207
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 126/222 (56%), Positives = 143/222 (64%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+PL K+KLVFLG+QSVGKTS+I TRFMYD FD TYQAT
Sbjct: 5 SPLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDTTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ N SF TS
Sbjct: 42 IGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTS 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI++VRTERG DVI++L V
Sbjct: 102 KWIEEVRTERGGDVIVVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQVS EEG+ KA+E VMFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVDKRQVSIEEGDGKAREFGVMFIETSAKAGFNIKPL 162
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 110/128 (85%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ N SF TSKWI++VRTERG DV
Sbjct: 56 RTIRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSKWIEEVRTERGGDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
I++LVGNKTDL DKRQVS EEG+ KA+E VMFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 116 IVVLVGNKTDLVDKRQVSIEEGDGKAREFGVMFIETSAKAGFNIKPLFRKIAAALPGMET 175
Query: 348 TENKPPED 355
+ ED
Sbjct: 176 LSSTKQED 183
>gi|302692114|ref|XP_003035736.1| hypothetical protein SCHCODRAFT_81164 [Schizophyllum commune H4-8]
gi|300109432|gb|EFJ00834.1| hypothetical protein SCHCODRAFT_81164 [Schizophyllum commune H4-8]
Length = 210
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 128/229 (55%), Positives = 149/229 (65%), Gaps = 65/229 (28%)
Query: 3 SSGDFGN-PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
++ DF + P ++ K+V LG+QSVGKTSL ITRFMYD+F
Sbjct: 5 ATADFSSSPPKRTKIVLLGDQSVGKTSL-----------------------ITRFMYDTF 41
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VA+VV+DITN
Sbjct: 42 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVFDITNR 101
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF TSKWIDDVR+ERG+DVII+L
Sbjct: 102 QSFLSTSKWIDDVRSERGNDVIIVL----------------------------------- 126
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNK DLSDKRQV+ EE KA++LN+MF+ETSAKAG+NVK +
Sbjct: 127 ------VGNKADLSDKRQVTLEEATAKAQQLNIMFMETSAKAGHNVKSL 169
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 90/119 (75%), Positives = 107/119 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VA+VV+DITN SF TSKWIDDVR+ERG+DV
Sbjct: 63 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVFDITNRQSFLSTSKWIDDVRSERGNDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II+LVGNK DLSDKRQV+ EE KA++LN+MF+ETSAKAG+NVK LF+++A +LPGMD
Sbjct: 123 IIVLVGNKADLSDKRQVTLEEATAKAQQLNIMFMETSAKAGHNVKSLFKKIAMSLPGMD 181
>gi|344296898|ref|XP_003420139.1| PREDICTED: ras-related protein Rab-6A-like [Loxodonta africana]
Length = 363
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 112/128 (87%), Positives = 120/128 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 215 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 274
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 275 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 334
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 335 TQDRSRED 342
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 114/166 (68%), Positives = 120/166 (72%), Gaps = 41/166 (24%)
Query: 65 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 124
++ATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF
Sbjct: 197 WEATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSF 256
Query: 125 HQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVI 184
QT+KWIDDVRTERGSDVIIML
Sbjct: 257 QQTTKWIDDVRTERGSDVIIML-------------------------------------- 278
Query: 185 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 279 ---VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 321
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/23 (91%), Positives = 22/23 (95%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQS 23
MS+ GDFGNPLRKFKLVFLGEQS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQS 23
>gi|449451431|ref|XP_004143465.1| PREDICTED: ras-related protein RABH1e-like [Cucumis sativus]
gi|449496434|ref|XP_004160133.1| PREDICTED: ras-related protein RABH1e-like [Cucumis sativus]
Length = 207
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 126/222 (56%), Positives = 145/222 (65%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+PL K+KLVFLG+QSVGKTS+I TRFMYD FD TYQAT
Sbjct: 5 SPLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDTTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD++N SF T+
Sbjct: 42 IGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSNRQSFLNTT 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI++VRTERGSDVII+L V
Sbjct: 102 KWIEEVRTERGSDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL +KRQVS EEG+ K++E VMFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVEKRQVSIEEGDAKSREFGVMFIETSAKAGFNIKPL 162
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 112/128 (87%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD++N SF T+KWI++VRTERGSDV
Sbjct: 56 RTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSNRQSFLNTTKWIEEVRTERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL +KRQVS EEG+ K++E VMFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 116 IIVLVGNKTDLVEKRQVSIEEGDAKSREFGVMFIETSAKAGFNIKPLFRKIAAALPGMET 175
Query: 348 TENKPPED 355
+ ED
Sbjct: 176 LSSTRQED 183
>gi|426337217|ref|XP_004032617.1| PREDICTED: LOW QUALITY PROTEIN: ras-related protein Rab-6C-like
[Gorilla gorilla gorilla]
Length = 278
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 133/230 (57%), Positives = 140/230 (60%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSV KTSLIT Y
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVAKTSLITEXXXXXXXXXY------------------ 42
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
QA IGIDFLSKTMYLED T+ L+LWDTAGQER RSLIPSYIRDS AVVVYDITN
Sbjct: 43 -----QAIIGIDFLSKTMYLEDGTIGLRLWDTAGQERLRSLIPSYIRDSAAAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTE GSDVII L
Sbjct: 98 VNSFQQTTKWIDDVRTEGGSDVIITL---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGN+TDL+DKRQVS EEGERKAK LNV FIET AKAGYNVKQ+
Sbjct: 124 -------VGNRTDLADKRQVSIEEGERKAKGLNVTFIETRAKAGYNVKQL 166
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 102/126 (80%), Positives = 111/126 (88%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
+ L+LWDTAGQER RSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTE GSDVII
Sbjct: 62 IGLRLWDTAGQERLRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTEGGSDVII 121
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
LVGN+TDL+DKRQVS EEGERKAK LNV FIET AKAGYNVKQLF RVAAALPGM+ST+
Sbjct: 122 TLVGNRTDLADKRQVSIEEGERKAKGLNVTFIETRAKAGYNVKQLFGRVAAALPGMESTQ 181
Query: 350 NKPPED 355
++ ED
Sbjct: 182 DRSRED 187
>gi|157817539|ref|NP_001102245.1| ras-related protein Rab-6B [Rattus norvegicus]
gi|194221614|ref|XP_001496020.2| PREDICTED: ras-related protein Rab-6B-like [Equus caballus]
gi|345789199|ref|XP_853481.2| PREDICTED: ras-related protein Rab-6B [Canis lupus familiaris]
gi|149018752|gb|EDL77393.1| RAB6B, member RAS oncogene family (predicted) [Rattus norvegicus]
Length = 175
Score = 237 bits (604), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 122/174 (70%), Positives = 129/174 (74%), Gaps = 41/174 (23%)
Query: 57 MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY 116
MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY
Sbjct: 1 MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY 60
Query: 117 DITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVR 176
DITN NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 61 DITNLNSFQQTSKWIDDVRTERGSDVIIML------------------------------ 90
Query: 177 TERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQ+
Sbjct: 91 -----------VGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQL 133
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 107/127 (84%), Positives = 118/127 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 27 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 86
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQLFRRVA+ALPGM++
Sbjct: 87 IIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMEN 146
Query: 348 TENKPPE 354
+ K E
Sbjct: 147 VQEKSKE 153
>gi|356512701|ref|XP_003525055.1| PREDICTED: ras-related protein RABH1e-like [Glycine max]
Length = 207
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 125/222 (56%), Positives = 144/222 (64%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+PL K+KLVFLG+QSVGKTS+I TRFMYD FD TYQAT
Sbjct: 5 SPLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDTTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ N SF T+
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTN 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KW+++VRTERGSDVII+L V
Sbjct: 102 KWVEEVRTERGSDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQVS EEG+ K++E +MFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVDKRQVSIEEGDAKSREFGIMFIETSAKAGFNIKPL 162
Score = 200 bits (508), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 111/128 (86%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ N SF T+KW+++VRTERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTNKWVEEVRTERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL DKRQVS EEG+ K++E +MFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 116 IIVLVGNKTDLVDKRQVSIEEGDAKSREFGIMFIETSAKAGFNIKPLFRKIAAALPGMET 175
Query: 348 TENKPPED 355
+ ED
Sbjct: 176 LSSTKQED 183
>gi|388514011|gb|AFK45067.1| unknown [Lotus japonicus]
Length = 210
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 127/222 (57%), Positives = 144/222 (64%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ L K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQAT
Sbjct: 5 SALAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYDI + +F TS
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDIASRQTFLNTS 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI++V +ERGSDVII+L V
Sbjct: 102 KWIEEVHSERGSDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL +KRQVSTEE E KA+ELNVMFIE SAKAG+N+K +
Sbjct: 121 GNKTDLVEKRQVSTEEAEAKARELNVMFIEASAKAGFNIKAL 162
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 110/128 (85%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYDI + +F TSKWI++V +ERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDIASRQTFLNTSKWIEEVHSERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL +KRQVSTEE E KA+ELNVMFIE SAKAG+N+K LFR++AAALPGM++
Sbjct: 116 IIVLVGNKTDLVEKRQVSTEEAEAKARELNVMFIEASAKAGFNIKALFRKIAAALPGMET 175
Query: 348 TENKPPED 355
ED
Sbjct: 176 LSTTKQED 183
>gi|330792608|ref|XP_003284380.1| Rab GTPase [Dictyostelium purpureum]
gi|325085726|gb|EGC39128.1| Rab GTPase [Dictyostelium purpureum]
Length = 206
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 127/220 (57%), Positives = 144/220 (65%), Gaps = 64/220 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K+KLVFLG+QSVGKTS+I TRFMYD+FD TYQATIG
Sbjct: 4 LSKYKLVFLGDQSVGKTSII-----------------------TRFMYDTFDITYQATIG 40
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VA+VVYDITN NSF T KW
Sbjct: 41 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDITNKNSFLNTIKW 100
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
I+DVR ERG++V+IML VGN
Sbjct: 101 IEDVRNERGNNVVIML-----------------------------------------VGN 119
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
KTDL+DKRQVS EEGE KA+E ++MF ETSAKAG+N+K +
Sbjct: 120 KTDLADKRQVSIEEGEAKAQEYDIMFTETSAKAGFNIKAL 159
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 93/120 (77%), Positives = 109/120 (90%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VA+VVYDITN NSF T KWI+DVR ERG++V
Sbjct: 53 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDITNKNSFLNTIKWIEDVRNERGNNV 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+IMLVGNKTDL+DKRQVS EEGE KA+E ++MF ETSAKAG+N+K LFR+VA+ALPG+DS
Sbjct: 113 VIMLVGNKTDLADKRQVSIEEGEAKAQEYDIMFTETSAKAGFNIKALFRKVASALPGIDS 172
>gi|302892455|ref|XP_003045109.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256726034|gb|EEU39396.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 203
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 128/228 (56%), Positives = 146/228 (64%), Gaps = 69/228 (30%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
+ G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSFD
Sbjct: 4 AGGSYNNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFD 40
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
N YQATIGIDFLSK DRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 41 NMYQATIGIDFLSK-----DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAK 95
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF T KWIDDVR ERG+DVII+L
Sbjct: 96 SFQNTKKWIDDVRAERGNDVIIVL------------------------------------ 119
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR+V+T++GE +AK+ N+MF+ETSAK G+NVK +
Sbjct: 120 -----VGNKTDLNDKREVTTQQGEEEAKKNNLMFVETSAKLGHNVKNL 162
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 91/120 (75%), Positives = 109/120 (90%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DVII
Sbjct: 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTKKWIDDVRAERGNDVII 117
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
+LVGNKTDL+DKR+V+T++GE +AK+ N+MF+ETSAK G+NVK LF+R+A ALPGM+ T+
Sbjct: 118 VLVGNKTDLNDKREVTTQQGEEEAKKNNLMFVETSAKLGHNVKNLFKRIAQALPGMEGTD 177
>gi|345314089|ref|XP_001515936.2| PREDICTED: ras-related protein Rab-6A-like, partial
[Ornithorhynchus anatinus]
Length = 147
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 119/126 (94%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
+RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDVII
Sbjct: 1 IRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVII 60
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
MLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S++
Sbjct: 61 MLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESSQ 120
Query: 350 NKPPED 355
+K ED
Sbjct: 121 DKSRED 126
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/146 (65%), Positives = 100/146 (68%), Gaps = 41/146 (28%)
Query: 85 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 144
+RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NS
Sbjct: 1 IRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNS--------------------- 39
Query: 145 MLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEE 204
F QT+KWIDDVRTERGSDVIIMLVGNKTDL+DKRQVS EE
Sbjct: 40 --------------------FQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEE 79
Query: 205 GERKAKELNVMFIETSAKAGYNVKQV 230
GERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 80 GERKAKELNVMFIETSAKAGYNVKQL 105
>gi|72384491|gb|AAZ67607.1| 80A08_22 [Brassica rapa subsp. pekinensis]
Length = 206
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 126/221 (57%), Positives = 143/221 (64%), Gaps = 64/221 (28%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
PL K+KLVFLG+QSVGKTS+I TRFMYD FD TYQATI
Sbjct: 6 PLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDTTYQATI 42
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
GIDFLSKTMY+EDRT+RLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ N SF TSK
Sbjct: 43 GIDFLSKTMYMEDRTLRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSK 102
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
WI+DVRTERGSDVII+L VG
Sbjct: 103 WIEDVRTERGSDVIIVL-----------------------------------------VG 121
Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NKTDL DKRQVS EEG+ KA++ V+FIETSAKAG+N+K +
Sbjct: 122 NKTDLVDKRQVSIEEGDNKARDFGVIFIETSAKAGFNIKPL 162
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 91/124 (73%), Positives = 109/124 (87%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ N SF TSKWI+DVRTERGSDV
Sbjct: 56 RTLRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSKWIEDVRTERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL DKRQVS EEG+ KA++ V+FIETSAKAG+N+K LFR+++AALPGMD+
Sbjct: 116 IIVLVGNKTDLVDKRQVSIEEGDNKARDFGVIFIETSAKAGFNIKPLFRKISAALPGMDT 175
Query: 348 TENK 351
+
Sbjct: 176 LSTR 179
>gi|321264959|ref|XP_003197196.1| GTPase, Ras-like GTP binding protein; Ypt6p [Cryptococcus gattii
WM276]
gi|317463675|gb|ADV25409.1| GTPase, Ras-like GTP binding protein, putative; Ypt6p [Cryptococcus
gattii WM276]
Length = 211
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/229 (57%), Positives = 147/229 (64%), Gaps = 69/229 (30%)
Query: 3 SSGDFGN---PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYD 59
S+ DF + PL+KFKLVFLGEQSVGKTSL ITRFMYD
Sbjct: 8 STADFSSASTPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYD 44
Query: 60 SFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT 119
+FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT ERFRSLIPSYIRDS+VAV+VYDIT
Sbjct: 45 TFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTG--ERFRSLIPSYIRDSSVAVIVYDIT 102
Query: 120 NANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTER 179
N SF TSKW+DDVR ERG DVII+L
Sbjct: 103 NRTSFQNTSKWVDDVRNERGQDVIIVL--------------------------------- 129
Query: 180 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDL+DKRQV+ E+ +++AKEL VM IETSAKAG+NVK
Sbjct: 130 --------VGNKTDLNDKRQVTPEDLDKRAKELGVMSIETSAKAGHNVK 170
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 86/117 (73%), Positives = 101/117 (86%), Gaps = 2/117 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDT ERFRSLIPSYIRDS+VAV+VYDITN SF TSKW+DDVR ERG DV
Sbjct: 68 RTVRLQLWDTG--ERFRSLIPSYIRDSSVAVIVYDITNRTSFQNTSKWVDDVRNERGQDV 125
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
II+LVGNKTDL+DKRQV+ E+ +++AKEL VM IETSAKAG+NVK LF+++A ALPG
Sbjct: 126 IIVLVGNKTDLNDKRQVTPEDLDKRAKELGVMSIETSAKAGHNVKTLFKKIAMALPG 182
>gi|395333800|gb|EJF66177.1| ras-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 214
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 126/228 (55%), Positives = 146/228 (64%), Gaps = 65/228 (28%)
Query: 4 SGDFGNP-LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
+ DF +P L++ K+V LG+QSVGKTSL ITRFMYD+FD
Sbjct: 8 TADFSSPPLKRSKIVLLGDQSVGKTSL-----------------------ITRFMYDTFD 44
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
NTYQATIGIDFLSK MYLEDRTVRLQLWDTAGQER+RSLIPSYIRD +VA+VV+DITN
Sbjct: 45 NTYQATIGIDFLSKAMYLEDRTVRLQLWDTAGQERYRSLIPSYIRDCSVAIVVFDITNRQ 104
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF TSKWIDDVR+ERG+DVII+L
Sbjct: 105 SFLSTSKWIDDVRSERGNDVIIVL------------------------------------ 128
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNK DLSDKRQV+ EE KA +LN+MF+ETSAKAG+NVK +
Sbjct: 129 -----VGNKADLSDKRQVTLEEANAKATQLNIMFMETSAKAGHNVKSL 171
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 89/127 (70%), Positives = 108/127 (85%), Gaps = 1/127 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQER+RSLIPSYIRD +VA+VV+DITN SF TSKWIDDVR+ERG+DV
Sbjct: 65 RTVRLQLWDTAGQERYRSLIPSYIRDCSVAIVVFDITNRQSFLSTSKWIDDVRSERGNDV 124
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNK DLSDKRQV+ EE KA +LN+MF+ETSAKAG+NVK LF+++A +L GM+
Sbjct: 125 IIVLVGNKADLSDKRQVTLEEANAKATQLNIMFMETSAKAGHNVKSLFKKIAMSLVGMEK 184
Query: 348 TENKPPE 354
EN+ E
Sbjct: 185 -ENEQSE 190
>gi|154286400|ref|XP_001543995.1| GTP-binding protein ryh1 [Ajellomyces capsulatus NAm1]
gi|150407636|gb|EDN03177.1| GTP-binding protein ryh1 [Ajellomyces capsulatus NAm1]
Length = 232
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/247 (53%), Positives = 151/247 (61%), Gaps = 82/247 (33%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
S++ + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 5 SATESYSNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 41
Query: 62 DNTYQATIGIDFLSK------------------TMYLEDRTVRLQLWDTAGQERFRSLIP 103
DN YQATIGIDFLSK TMYLEDRTVRLQLWDTAGQERFRSLIP
Sbjct: 42 DNMYQATIGIDFLSKVGSQPSSNRPPRLPFIMGTMYLEDRTVRLQLWDTAGQERFRSLIP 101
Query: 104 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHAN 163
SYIRDS+VAVVVYDI+NA SF T KW+DDVR ERG+DVII+L
Sbjct: 102 SYIRDSSVAVVVYDISNAKSFQNTRKWVDDVRGERGNDVIIVL----------------- 144
Query: 164 SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA 223
VGNKTDL+D+R+V+T +GE +AK+ +MFIETSAK
Sbjct: 145 ------------------------VGNKTDLNDRREVTTAQGEEEAKKHGLMFIETSAKV 180
Query: 224 GYNVKQV 230
G+NVKQ+
Sbjct: 181 GHNVKQL 187
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 92/127 (72%), Positives = 109/127 (85%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KW+DDVR ERG+DV
Sbjct: 81 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWVDDVRGERGNDV 140
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+D+R+V+T +GE +AK+ +MFIETSAK G+NVKQLFRR+A ALPGMD
Sbjct: 141 IIVLVGNKTDLNDRREVTTAQGEEEAKKHGLMFIETSAKVGHNVKQLFRRIAQALPGMDD 200
Query: 348 TENKPPE 354
+ E
Sbjct: 201 ESGRACE 207
>gi|167524248|ref|XP_001746460.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775222|gb|EDQ88847.1| predicted protein [Monosiga brevicollis MX1]
Length = 214
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/228 (57%), Positives = 141/228 (61%), Gaps = 58/228 (25%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
S D NPLRKFKLVFLGEQS + + D + S
Sbjct: 2 SGTDLANPLRKFKLVFLGEQSGTLSPCKAQSEPD-----------------LPAPHSSLY 44
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN N
Sbjct: 45 AWTQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRN 104
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF QTSKWIDDVR ERGSDV+IML
Sbjct: 105 SFQQTSKWIDDVRAERGSDVVIML------------------------------------ 128
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR+VS EEGE KAKELNVMFIETSAKAG+NVKQ+
Sbjct: 129 -----VGNKTDLNDKREVSLEEGEAKAKELNVMFIETSAKAGHNVKQL 171
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 107/121 (88%), Positives = 115/121 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN NSF QTSKWIDDVR ERGSDV
Sbjct: 65 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRNSFQQTSKWIDDVRAERGSDV 124
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+IMLVGNKTDL+DKR+VS EEGE KAKELNVMFIETSAKAG+NVKQLF+RVAAALPGM+S
Sbjct: 125 VIMLVGNKTDLNDKREVSLEEGEAKAKELNVMFIETSAKAGHNVKQLFKRVAAALPGMES 184
Query: 348 T 348
T
Sbjct: 185 T 185
>gi|298707324|emb|CBJ25951.1| Rab6, RAB family GTPase [Ectocarpus siliculosus]
Length = 217
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/238 (53%), Positives = 147/238 (61%), Gaps = 72/238 (30%)
Query: 1 MSSSGDFGN--------PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSL 52
M+ +G+ G PL K+KLVFLG+QSVGKTS+I
Sbjct: 1 MAQAGENGGAPAVPQIAPLAKYKLVFLGDQSVGKTSII---------------------- 38
Query: 53 ITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 112
TRFMYD+FD YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VA
Sbjct: 39 -TRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 97
Query: 113 VVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI 172
V+VYDITN SF TSKWI+DVR ERG+DV++ML
Sbjct: 98 VIVYDITNRASFLNTSKWIEDVRNERGNDVVMML-------------------------- 131
Query: 173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL ++RQVS EEGE +AK +MFIETSAK GYN+K +
Sbjct: 132 ---------------VGNKTDLKERRQVSVEEGEDRAKAEGIMFIETSAKGGYNIKAL 174
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 89/121 (73%), Positives = 105/121 (86%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYDITN SF TSKWI+DVR ERG+DV
Sbjct: 68 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRNERGNDV 127
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
++MLVGNKTDL ++RQVS EEGE +AK +MFIETSAK GYN+K LFR++A ALPGM++
Sbjct: 128 VMMLVGNKTDLKERRQVSVEEGEDRAKAEGIMFIETSAKGGYNIKALFRKLATALPGMET 187
Query: 348 T 348
Sbjct: 188 A 188
>gi|91089681|ref|XP_974614.1| PREDICTED: similar to Rab-protein 6 CG6601-PA [Tribolium castaneum]
gi|270012633|gb|EFA09081.1| hypothetical protein TcasGA2_TC006800 [Tribolium castaneum]
Length = 210
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 125/229 (54%), Positives = 144/229 (62%), Gaps = 64/229 (27%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
S S D+ L+K+KLVFLGEQSVGKTS+I T+FMYDSF
Sbjct: 5 SISQDYNPSLQKYKLVFLGEQSVGKTSII-----------------------TKFMYDSF 41
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
D YQAT+GIDFLSKTMYL D+TVRLQLWDTAGQERFRSLIP+YIRDS+VAVVV+D+TN
Sbjct: 42 DTAYQATVGIDFLSKTMYLTDKTVRLQLWDTAGQERFRSLIPAYIRDSSVAVVVFDVTNI 101
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
+FHQT+KWI+DVR ERG VI+ L
Sbjct: 102 ETFHQTTKWINDVRMERGDSVIVFL----------------------------------- 126
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNK DL D RQVS EEGE+KAKELNV F+ETSAK G N+KQ+
Sbjct: 127 ------VGNKVDLKDLRQVSIEEGEQKAKELNVTFVETSAKVGLNIKQL 169
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 85/115 (73%), Positives = 99/115 (86%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K VRLQLWDTAGQERFRSLIP+YIRDS+VAVVV+D+TN +FHQT+KWI+DVR ERG V
Sbjct: 63 KTVRLQLWDTAGQERFRSLIPAYIRDSSVAVVVFDVTNIETFHQTTKWINDVRMERGDSV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
I+ LVGNK DL D RQVS EEGE+KAKELNV F+ETSAK G N+KQLF+R+ +L
Sbjct: 123 IVFLVGNKVDLKDLRQVSIEEGEQKAKELNVTFVETSAKVGLNIKQLFKRITESL 177
>gi|449683751|ref|XP_002159099.2| PREDICTED: ras-related protein Rab-6A-like [Hydra magnipapillata]
Length = 176
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 122/174 (70%), Positives = 128/174 (73%), Gaps = 41/174 (23%)
Query: 57 MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY 116
MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVY
Sbjct: 1 MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 60
Query: 117 DITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVR 176
DITN NSF QTSKWIDDVR ERGSDVIIML
Sbjct: 61 DITNVNSFQQTSKWIDDVRVERGSDVIIML------------------------------ 90
Query: 177 TERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL++KRQV+TE GE KAKELNVMFIETSAKAG+NVKQ+
Sbjct: 91 -----------VGNKTDLAEKRQVATESGEAKAKELNVMFIETSAKAGHNVKQL 133
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 106/124 (85%), Positives = 117/124 (94%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN NSF QTSKWIDDVR ERGSDV
Sbjct: 27 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNVNSFQQTSKWIDDVRVERGSDV 86
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL++KRQV+TE GE KAKELNVMFIETSAKAG+NVKQLFR+VA+ALPGM++
Sbjct: 87 IIMLVGNKTDLAEKRQVATESGEAKAKELNVMFIETSAKAGHNVKQLFRKVASALPGMEN 146
Query: 348 TENK 351
T +K
Sbjct: 147 TPDK 150
>gi|336367247|gb|EGN95592.1| hypothetical protein SERLA73DRAFT_186692 [Serpula lacrymans var.
lacrymans S7.3]
gi|336379967|gb|EGO21121.1| hypothetical protein SERLADRAFT_475872 [Serpula lacrymans var.
lacrymans S7.9]
Length = 214
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 127/227 (55%), Positives = 147/227 (64%), Gaps = 65/227 (28%)
Query: 3 SSGDFGN-PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
++ DF + P ++ K+V LG+QSVGKTSL ITRFMYD+F
Sbjct: 8 TTADFSSTPPKRTKIVLLGDQSVGKTSL-----------------------ITRFMYDTF 44
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VA+VV+DITN
Sbjct: 45 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVFDITNR 104
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF TSKWIDDVR+ERG+DVII+L
Sbjct: 105 QSFLSTSKWIDDVRSERGNDVIIVL----------------------------------- 129
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNK DLSDKRQV+ EE K+ +LN+MF+ETSAKAG+NVK
Sbjct: 130 ------VGNKADLSDKRQVTLEEATAKSTQLNIMFMETSAKAGHNVK 170
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 88/119 (73%), Positives = 106/119 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VA+VV+DITN SF TSKWIDDVR+ERG+DV
Sbjct: 66 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVFDITNRQSFLSTSKWIDDVRSERGNDV 125
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II+LVGNK DLSDKRQV+ EE K+ +LN+MF+ETSAKAG+NVK LF+++A +LPGM+
Sbjct: 126 IIVLVGNKADLSDKRQVTLEEATAKSTQLNIMFMETSAKAGHNVKGLFKKIAMSLPGME 184
>gi|237829989|ref|XP_002364292.1| RAB6 protein [Toxoplasma gondii ME49]
gi|6984166|gb|AAF34783.1|AF228419_1 RAB6 protein [Toxoplasma gondii]
gi|211961956|gb|EEA97151.1| RAB6 protein [Toxoplasma gondii ME49]
gi|221507160|gb|EEE32764.1| RAB6 protein, putative [Toxoplasma gondii VEG]
Length = 209
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 125/220 (56%), Positives = 143/220 (65%), Gaps = 64/220 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K+KLVFLGEQ+VGKTS+I TRFMYD+FDN YQATIG
Sbjct: 9 LNKYKLVFLGEQAVGKTSII-----------------------TRFMYDTFDNNYQATIG 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKT+YLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+ AVVVYDITN SF T+KW
Sbjct: 46 IDFLSKTLYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSAAVVVYDITNRASFLNTTKW 105
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
I+DVR ERG+DVII L VGN
Sbjct: 106 IEDVRAERGNDVIISL-----------------------------------------VGN 124
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
KTDL+D+RQVS EEG +KA+E ++MF+ETSAKAGYN+K +
Sbjct: 125 KTDLADRRQVSYEEGRQKAQEHDIMFVETSAKAGYNIKNL 164
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 89/122 (72%), Positives = 109/122 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+ AVVVYDITN SF T+KWI+DVR ERG+DV
Sbjct: 58 RTVRLQLWDTAGQERFRSLIPSYIRDSSAAVVVYDITNRASFLNTTKWIEDVRAERGNDV 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II LVGNKTDL+D+RQVS EEG +KA+E ++MF+ETSAKAGYN+K LFR++A+ALPG+++
Sbjct: 118 IISLVGNKTDLADRRQVSYEEGRQKAQEHDIMFVETSAKAGYNIKNLFRKLASALPGLET 177
Query: 348 TE 349
+
Sbjct: 178 QQ 179
>gi|356525473|ref|XP_003531349.1| PREDICTED: ras-related protein RABH1e-like [Glycine max]
Length = 207
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 124/222 (55%), Positives = 144/222 (64%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+PL K+KLVFLG+QSVGKTS+I TRFMYD FD TYQAT
Sbjct: 5 SPLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDTTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ N SF T+
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTN 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KW+++VRTERGSDVII+L V
Sbjct: 102 KWVEEVRTERGSDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL +KRQVS EEG+ K++E +MFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVEKRQVSIEEGDAKSREFGIMFIETSAKAGFNIKPL 162
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 111/128 (86%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ N SF T+KW+++VRTERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTNKWVEEVRTERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL +KRQVS EEG+ K++E +MFIETSAKAG+N+K LFR++AAALPGM+S
Sbjct: 116 IIVLVGNKTDLVEKRQVSIEEGDAKSREFGIMFIETSAKAGFNIKPLFRKIAAALPGMES 175
Query: 348 TENKPPED 355
+ ED
Sbjct: 176 LSSTKQED 183
>gi|403413298|emb|CCL99998.1| predicted protein [Fibroporia radiculosa]
Length = 231
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 127/228 (55%), Positives = 144/228 (63%), Gaps = 65/228 (28%)
Query: 4 SGDFGNP-LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
S DF +P L++ K+V LG+QSVGKTSL ITRFMYD+FD
Sbjct: 7 SADFSSPPLKRSKIVLLGDQSVGKTSL-----------------------ITRFMYDTFD 43
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
NTYQATIGIDFLSK MYLEDRTVRLQLWDTAGQER+RSLIPSYIRD +VA+VV+DITN
Sbjct: 44 NTYQATIGIDFLSKAMYLEDRTVRLQLWDTAGQERYRSLIPSYIRDCSVAIVVFDITNRQ 103
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF TSKWIDDVR+ERGSDVII+L
Sbjct: 104 SFLSTSKWIDDVRSERGSDVIIVL------------------------------------ 127
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNK DLSDKRQV EE KA +L +MF+ETSAKAG+NVK +
Sbjct: 128 -----VGNKADLSDKRQVMLEEANTKATQLEIMFMETSAKAGHNVKSL 170
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 86/119 (72%), Positives = 101/119 (84%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQER+RSLIPSYIRD +VA+VV+DITN SF TSKWIDDVR+ERGSDV
Sbjct: 64 RTVRLQLWDTAGQERYRSLIPSYIRDCSVAIVVFDITNRQSFLSTSKWIDDVRSERGSDV 123
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II+LVGNK DLSDKRQV EE KA +L +MF+ETSAKAG+NVK LF+++A L GM+
Sbjct: 124 IIVLVGNKADLSDKRQVMLEEANTKATQLEIMFMETSAKAGHNVKSLFKKIAMELVGME 182
>gi|46111195|ref|XP_382655.1| hypothetical protein FG02479.1 [Gibberella zeae PH-1]
Length = 203
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 127/228 (55%), Positives = 146/228 (64%), Gaps = 69/228 (30%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
+ G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSFD
Sbjct: 4 AGGSYNNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFD 40
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
N YQATIGIDFLSK DRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 41 NMYQATIGIDFLSK-----DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAK 95
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF T KWIDDVR ERG+DVII+L
Sbjct: 96 SFQNTKKWIDDVRAERGNDVIIVL------------------------------------ 119
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL++KR+V+T++GE +AK+ N+MF+ETSAK G+NVK +
Sbjct: 120 -----VGNKTDLNEKREVTTQQGEEEAKKNNLMFVETSAKLGHNVKNL 162
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 89/120 (74%), Positives = 109/120 (90%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DVII
Sbjct: 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTKKWIDDVRAERGNDVII 117
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
+LVGNKTDL++KR+V+T++GE +AK+ N+MF+ETSAK G+NVK LF+R+A ALPGM+ ++
Sbjct: 118 VLVGNKTDLNEKREVTTQQGEEEAKKNNLMFVETSAKLGHNVKNLFKRIAQALPGMEGSD 177
>gi|170087436|ref|XP_001874941.1| GTP binding protein [Laccaria bicolor S238N-H82]
gi|164650141|gb|EDR14382.1| GTP binding protein [Laccaria bicolor S238N-H82]
Length = 213
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 126/230 (54%), Positives = 148/230 (64%), Gaps = 65/230 (28%)
Query: 2 SSSGDFGN-PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
+ + DF + P ++ K+V LG+QSVGKTSL ITRFMYD+
Sbjct: 7 TPAADFSSSPPKRTKIVLLGDQSVGKTSL-----------------------ITRFMYDT 43
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VA+VV+DITN
Sbjct: 44 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVFDITN 103
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
SF T+KWIDDVR+ERG+DVII+L
Sbjct: 104 RQSFLSTTKWIDDVRSERGNDVIIVL---------------------------------- 129
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNK DLSDKRQV+ EE K+ +LN+MF+ETSAKAG+NVK +
Sbjct: 130 -------VGNKADLSDKRQVTLEEATAKSTQLNIMFMETSAKAGHNVKSL 172
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 88/126 (69%), Positives = 107/126 (84%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VA+VV+DITN SF T+KWIDDVR+ERG+DV
Sbjct: 66 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVFDITNRQSFLSTTKWIDDVRSERGNDV 125
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNK DLSDKRQV+ EE K+ +LN+MF+ETSAKAG+NVK LF+++A +LPGM+
Sbjct: 126 IIVLVGNKADLSDKRQVTLEEATAKSTQLNIMFMETSAKAGHNVKSLFKKIAMSLPGMEK 185
Query: 348 TENKPP 353
P
Sbjct: 186 ENQADP 191
>gi|388519757|gb|AFK47940.1| unknown [Lotus japonicus]
Length = 191
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 125/222 (56%), Positives = 144/222 (64%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+PL K+KLVFLG+QSVGKTS+I TRFMYD FD TYQAT
Sbjct: 5 SPLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDTTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ N SF T+
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTN 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KW+++VRTERGSDVII+L V
Sbjct: 102 KWVEEVRTERGSDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQVS EEG+ K++E +MFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVDKRQVSIEEGDAKSREFGIMFIETSAKAGFNIKPL 162
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 88/117 (75%), Positives = 105/117 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ N SF T+KW+++VRTERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTNKWVEEVRTERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
II+LVGNKTDL DKRQVS EEG+ K++E +MFIETSAKAG+N+K LFR++AAALPG
Sbjct: 116 IIVLVGNKTDLVDKRQVSIEEGDAKSREFGIMFIETSAKAGFNIKPLFRKIAAALPG 172
>gi|430811133|emb|CCJ31387.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 203
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 126/219 (57%), Positives = 144/219 (65%), Gaps = 64/219 (29%)
Query: 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
RKFKLVFLG+QSVGKTSL ITRFMYD+FDNTYQATIGI
Sbjct: 9 RKFKLVFLGDQSVGKTSL-----------------------ITRFMYDTFDNTYQATIGI 45
Query: 72 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
DFLSKTMYLEDRTVRLQLWDTAGQERFRSLI SYIRDS+VA+VVYDITN SF T++WI
Sbjct: 46 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIASYIRDSSVAIVVYDITNRTSFINTNRWI 105
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
DD++ ERG+DVII++ VGNK
Sbjct: 106 DDIKAERGNDVIIVI-----------------------------------------VGNK 124
Query: 192 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
TDL++KRQV+TEEGE+ AKEL MF+ETSAK G+NVK +
Sbjct: 125 TDLNNKRQVTTEEGEKMAKELKTMFMETSAKTGHNVKAL 163
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/118 (70%), Positives = 102/118 (86%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLI SYIRDS+VA+VVYDITN SF T++WIDD++ ERG+DV
Sbjct: 57 RTVRLQLWDTAGQERFRSLIASYIRDSSVAIVVYDITNRTSFINTNRWIDDIKAERGNDV 116
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
II++VGNKTDL++KRQV+TEEGE+ AKEL MF+ETSAK G+NVK LF+ + LPG+
Sbjct: 117 IIVIVGNKTDLNNKRQVTTEEGEKMAKELKTMFMETSAKTGHNVKALFKEITLILPGI 174
>gi|359497196|ref|XP_002271220.2| PREDICTED: ras-related protein RABH1e-like [Vitis vinifera]
Length = 207
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 125/222 (56%), Positives = 144/222 (64%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+PL K+KLVFLG+QSVGKTS+I TRFMYD FD TYQAT
Sbjct: 5 SPLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDATYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ N SF TS
Sbjct: 42 IGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVGNRQSFLNTS 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI++VRTERG+DVII+L V
Sbjct: 102 KWIEEVRTERGTDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQVS EEG+ K+++ VMFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVDKRQVSIEEGDTKSRDFGVMFIETSAKAGFNIKPL 162
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 111/128 (86%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ N SF TSKWI++VRTERG+DV
Sbjct: 56 RTIRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVGNRQSFLNTSKWIEEVRTERGTDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL DKRQVS EEG+ K+++ VMFIETSAKAG+N+K LFR++A+ALPGM++
Sbjct: 116 IIVLVGNKTDLVDKRQVSIEEGDTKSRDFGVMFIETSAKAGFNIKPLFRKIASALPGMET 175
Query: 348 TENKPPED 355
+ ED
Sbjct: 176 LSSTKQED 183
>gi|225680073|gb|EEH18357.1| GTP-binding protein ryh1 [Paracoccidioides brasiliensis Pb03]
Length = 205
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 129/229 (56%), Positives = 147/229 (64%), Gaps = 68/229 (29%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
S++G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 5 SATGSYSNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 41
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DN YQATIGIDFLSK DRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 42 DNMYQATIGIDFLSKV----DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNA 97
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF T KWIDDVR ERG+DVII+L
Sbjct: 98 KSFQNTRKWIDDVRGERGNDVIIVL----------------------------------- 122
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+D+R+V+T +GE +AK+ +MFIETSAK G+NVKQ+
Sbjct: 123 ------VGNKTDLNDRREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQL 165
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 92/119 (77%), Positives = 107/119 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DV
Sbjct: 59 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRGERGNDV 118
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II+LVGNKTDL+D+R+V+T +GE +AK+ +MFIETSAK G+NVKQLFRR+A ALPGMD
Sbjct: 119 IIVLVGNKTDLNDRREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQLFRRIAQALPGMD 177
>gi|409082156|gb|EKM82514.1| hypothetical protein AGABI1DRAFT_111121 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426199982|gb|EKV49906.1| GTP binding protein [Agaricus bisporus var. bisporus H97]
Length = 214
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 126/226 (55%), Positives = 146/226 (64%), Gaps = 65/226 (28%)
Query: 4 SGDFGN-PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
+ DF + P ++ K+V LG+QSVGKTSL ITRFMYD+FD
Sbjct: 10 AADFSSAPPKRTKIVLLGDQSVGKTSL-----------------------ITRFMYDTFD 46
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VA+VV+DITN
Sbjct: 47 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVFDITNRQ 106
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF T+KWI+DVR+ERG+DVII+L
Sbjct: 107 SFMSTTKWIEDVRSERGNDVIIVL------------------------------------ 130
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNK DLSDKRQV+ EE KA +LN+MF+ETSAKAG+NVK
Sbjct: 131 -----VGNKADLSDKRQVTLEEATAKATQLNIMFMETSAKAGHNVK 171
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 87/119 (73%), Positives = 106/119 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VA+VV+DITN SF T+KWI+DVR+ERG+DV
Sbjct: 67 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVFDITNRQSFMSTTKWIEDVRSERGNDV 126
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II+LVGNK DLSDKRQV+ EE KA +LN+MF+ETSAKAG+NVK LF+++A +LPGM+
Sbjct: 127 IIVLVGNKADLSDKRQVTLEEATAKATQLNIMFMETSAKAGHNVKGLFKKIAMSLPGME 185
>gi|66828353|ref|XP_647531.1| Rab GTPase [Dictyostelium discoideum AX4]
gi|74897470|sp|Q55FK2.1|RAB6_DICDI RecName: Full=Ras-related protein Rab-6
gi|60475552|gb|EAL73487.1| Rab GTPase [Dictyostelium discoideum AX4]
Length = 208
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 127/220 (57%), Positives = 143/220 (65%), Gaps = 64/220 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K+KLVFLG+QSVGKTS+I TRFMYD+FD TYQATIG
Sbjct: 4 LSKYKLVFLGDQSVGKTSII-----------------------TRFMYDTFDITYQATIG 40
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VA+VVYDITN SF T KW
Sbjct: 41 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDITNKVSFTNTIKW 100
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
I+DVR ERG++V+IML VGN
Sbjct: 101 IEDVRNERGNNVVIML-----------------------------------------VGN 119
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
KTDL+DKRQVS EEGE KAKE ++MF ETSAKAG+N+K +
Sbjct: 120 KTDLADKRQVSIEEGEAKAKEYDIMFTETSAKAGFNIKAL 159
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 93/120 (77%), Positives = 108/120 (90%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VA+VVYDITN SF T KWI+DVR ERG++V
Sbjct: 53 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDITNKVSFTNTIKWIEDVRNERGNNV 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+IMLVGNKTDL+DKRQVS EEGE KAKE ++MF ETSAKAG+N+K LFR+VA+ALPG+DS
Sbjct: 113 VIMLVGNKTDLADKRQVSIEEGEAKAKEYDIMFTETSAKAGFNIKALFRKVASALPGIDS 172
>gi|221487362|gb|EEE25594.1| RAB6 protein, putative [Toxoplasma gondii GT1]
Length = 234
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 125/220 (56%), Positives = 143/220 (65%), Gaps = 64/220 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K+KLVFLGEQ+VGKTS+I TRFMYD+FDN YQATIG
Sbjct: 34 LNKYKLVFLGEQAVGKTSII-----------------------TRFMYDTFDNNYQATIG 70
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKT+YLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+ AVVVYDITN SF T+KW
Sbjct: 71 IDFLSKTLYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSAAVVVYDITNRASFLNTTKW 130
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
I+DVR ERG+DVII L VGN
Sbjct: 131 IEDVRAERGNDVIISL-----------------------------------------VGN 149
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
KTDL+D+RQVS EEG +KA+E ++MF+ETSAKAGYN+K +
Sbjct: 150 KTDLADRRQVSYEEGRQKAQEHDIMFVETSAKAGYNIKNL 189
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 89/122 (72%), Positives = 109/122 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+ AVVVYDITN SF T+KWI+DVR ERG+DV
Sbjct: 83 RTVRLQLWDTAGQERFRSLIPSYIRDSSAAVVVYDITNRASFLNTTKWIEDVRAERGNDV 142
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II LVGNKTDL+D+RQVS EEG +KA+E ++MF+ETSAKAGYN+K LFR++A+ALPG+++
Sbjct: 143 IISLVGNKTDLADRRQVSYEEGRQKAQEHDIMFVETSAKAGYNIKNLFRKLASALPGLET 202
Query: 348 TE 349
+
Sbjct: 203 QQ 204
>gi|392595561|gb|EIW84884.1| GTP binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 214
Score = 233 bits (595), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 125/229 (54%), Positives = 148/229 (64%), Gaps = 65/229 (28%)
Query: 3 SSGDFGN-PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
++ DF + P ++ K+V LG+QSVGKTSL ITRFMYD+F
Sbjct: 8 TTADFSSTPPKRTKIVLLGDQSVGKTSL-----------------------ITRFMYDTF 44
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VA+VV+DITN
Sbjct: 45 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVFDITNR 104
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF T+KWI+DVR+ERG+DVII+L
Sbjct: 105 QSFLSTTKWIEDVRSERGNDVIIVL----------------------------------- 129
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNK DLSDKRQV+ EE K+ E+N+MF+ETSAKAG+NVK +
Sbjct: 130 ------VGNKADLSDKRQVTLEEATTKSTEMNIMFMETSAKAGHNVKSL 172
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 86/119 (72%), Positives = 106/119 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VA+VV+DITN SF T+KWI+DVR+ERG+DV
Sbjct: 66 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVFDITNRQSFLSTTKWIEDVRSERGNDV 125
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II+LVGNK DLSDKRQV+ EE K+ E+N+MF+ETSAKAG+NVK LF+++A +LPGM+
Sbjct: 126 IIVLVGNKADLSDKRQVTLEEATTKSTEMNIMFMETSAKAGHNVKSLFKKIALSLPGME 184
>gi|322693940|gb|EFY85784.1| RAS small monomeric GTPase Rab6 [Metarhizium acridum CQMa 102]
Length = 490
Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 126/228 (55%), Positives = 149/228 (65%), Gaps = 54/228 (23%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
+ G + NPL+KFK G + R +T+ +GKTSLITRFMYDSFD
Sbjct: 4 AGGSYNNPLKKFKYA-------GVSGGAER------QDTHNPDPIGKTSLITRFMYDSFD 50
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
N YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 51 NMYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAK 110
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF T KWIDDVR ERG+DVII+L
Sbjct: 111 SFQNTKKWIDDVRAERGNDVIIVL------------------------------------ 134
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL++KR+V+T++GE +AK+ N+MF+ETSAK G+NVK +
Sbjct: 135 -----VGNKTDLNEKREVTTQQGEDEAKKNNLMFMETSAKLGHNVKNL 177
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 89/120 (74%), Positives = 108/120 (90%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DV
Sbjct: 71 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTKKWIDDVRAERGNDV 130
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL++KR+V+T++GE +AK+ N+MF+ETSAK G+NVK LF+R+A ALPGM+
Sbjct: 131 IIVLVGNKTDLNEKREVTTQQGEDEAKKNNLMFMETSAKLGHNVKNLFKRIAQALPGMEG 190
>gi|401411219|ref|XP_003885057.1| RAB5C, member RAS oncogene family, related, partial [Neospora
caninum Liverpool]
gi|325119476|emb|CBZ55029.1| RAB5C, member RAS oncogene family, related [Neospora caninum
Liverpool]
Length = 185
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/220 (56%), Positives = 143/220 (65%), Gaps = 64/220 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K+KLVFLGEQ+VGKTS+I TRFMYD+FDN YQATIG
Sbjct: 9 LNKYKLVFLGEQAVGKTSII-----------------------TRFMYDTFDNNYQATIG 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKT+YLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+ AVVVYDITN SF T+KW
Sbjct: 46 IDFLSKTLYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSAAVVVYDITNRASFLNTTKW 105
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
I+DVR ERG+DVII L VGN
Sbjct: 106 IEDVRAERGNDVIISL-----------------------------------------VGN 124
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
KTDL+D+RQVS EEG +KA+E ++MF+ETSAKAGYN+K +
Sbjct: 125 KTDLADRRQVSYEEGRQKAQEHDIMFVETSAKAGYNIKNL 164
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 84/113 (74%), Positives = 101/113 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+ AVVVYDITN SF T+KWI+DVR ERG+DV
Sbjct: 58 RTVRLQLWDTAGQERFRSLIPSYIRDSSAAVVVYDITNRASFLNTTKWIEDVRAERGNDV 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA 340
II LVGNKTDL+D+RQVS EEG +KA+E ++MF+ETSAKAGYN+K LFR++++
Sbjct: 118 IISLVGNKTDLADRRQVSYEEGRQKAQEHDIMFVETSAKAGYNIKNLFRKLSS 170
>gi|290993933|ref|XP_002679587.1| rab small GTPase [Naegleria gruberi]
gi|284093204|gb|EFC46843.1| rab small GTPase [Naegleria gruberi]
Length = 230
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 125/222 (56%), Positives = 141/222 (63%), Gaps = 67/222 (30%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
P K+K+VFLG+Q+VGKTS+I TRFMYDSFD TY TI
Sbjct: 11 PANKYKIVFLGDQAVGKTSII-----------------------TRFMYDSFDTTYHNTI 47
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VA++VYDIT+ SF T+K
Sbjct: 48 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITSKQSFMNTNK 107
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
WI+DVRTERG DVI++L VG
Sbjct: 108 WIEDVRTERGDDVIVVL-----------------------------------------VG 126
Query: 190 NKTDL---SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
NKTDL SDKRQVS EEGE KAKE +MF+ETSAKAGYN+K
Sbjct: 127 NKTDLASDSDKRQVSIEEGESKAKEYGIMFLETSAKAGYNIK 168
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 92/130 (70%), Positives = 108/130 (83%), Gaps = 4/130 (3%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VA++VYDIT+ SF T+KWI+DVRTERG DV
Sbjct: 61 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITSKQSFMNTNKWIEDVRTERGDDV 120
Query: 288 IIMLVGNKTDL---SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP- 343
I++LVGNKTDL SDKRQVS EEGE KAKE +MF+ETSAKAGYN+K LF +VA ALP
Sbjct: 121 IVVLVGNKTDLASDSDKRQVSIEEGESKAKEYGIMFLETSAKAGYNIKTLFTKVANALPT 180
Query: 344 GMDSTENKPP 353
+D++ P
Sbjct: 181 AVDASATSNP 190
>gi|301093026|ref|XP_002997362.1| Rab6 family GTPase, putative [Phytophthora infestans T30-4]
gi|262110760|gb|EEY68812.1| Rab6 family GTPase, putative [Phytophthora infestans T30-4]
Length = 238
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 128/225 (56%), Positives = 142/225 (63%), Gaps = 68/225 (30%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
PL K+KLVFLG+Q VGKTS+I TRFMYD+FDN YQATI
Sbjct: 43 PLAKYKLVFLGDQGVGKTSMI-----------------------TRFMYDTFDNAYQATI 79
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
GIDFLSKTMY+EDRTVRLQLWDTAGQ+ LIPSYIRDS+VAVVVYDITN SF TSK
Sbjct: 80 GIDFLSKTMYMEDRTVRLQLWDTAGQD----LIPSYIRDSSVAVVVYDITNRASFLNTSK 135
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
WI+DVRTERG DV+IML VG
Sbjct: 136 WIEDVRTERGQDVVIML-----------------------------------------VG 154
Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NKTD+SD+RQVS EEG KAKE NVMFIETSAKAGYN+K + +L
Sbjct: 155 NKTDISDRRQVSIEEGSDKAKEENVMFIETSAKAGYNIKALFRKL 199
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 92/121 (76%), Positives = 104/121 (85%), Gaps = 4/121 (3%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQ+ LIPSYIRDS+VAVVVYDITN SF TSKWI+DVRTERG DV
Sbjct: 93 RTVRLQLWDTAGQD----LIPSYIRDSSVAVVVYDITNRASFLNTSKWIEDVRTERGQDV 148
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+IMLVGNKTD+SD+RQVS EEG KAKE NVMFIETSAKAGYN+K LFR++A LPGM++
Sbjct: 149 VIMLVGNKTDISDRRQVSIEEGSDKAKEENVMFIETSAKAGYNIKALFRKLATVLPGMEN 208
Query: 348 T 348
T
Sbjct: 209 T 209
>gi|356567704|ref|XP_003552057.1| PREDICTED: ras-related protein RABH1e-like [Glycine max]
Length = 207
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 125/222 (56%), Positives = 143/222 (64%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+PL K+KLVFLG+QSVGKTS+I TRFMYD FD YQAT
Sbjct: 5 SPLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDINYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD+ N SF T+
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVANRQSFLNTN 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI++VRTERGSDVII+L V
Sbjct: 102 KWIEEVRTERGSDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL +KRQVS EEG+ K++E +MFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVEKRQVSIEEGDAKSRESGIMFIETSAKAGFNIKPL 162
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 111/128 (86%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD+ N SF T+KWI++VRTERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVANRQSFLNTNKWIEEVRTERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL +KRQVS EEG+ K++E +MFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 116 IIVLVGNKTDLVEKRQVSIEEGDAKSRESGIMFIETSAKAGFNIKPLFRKIAAALPGMET 175
Query: 348 TENKPPED 355
+ ED
Sbjct: 176 LSSTKQED 183
>gi|47550805|ref|NP_999930.1| RAB6A, member RAS oncogene family [Danio rerio]
gi|27881933|gb|AAH44491.1| RAB6A, member RAS oncogene family [Danio rerio]
Length = 181
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 134/230 (58%), Positives = 138/230 (60%), Gaps = 91/230 (39%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS++GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAAGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV------ 91
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
VIIMLVG
Sbjct: 92 ---------------------VIIMLVG-------------------------------- 98
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 99 ---------NKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 139
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 97/128 (75%), Gaps = 27/128 (21%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVV--------------------------- 92
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 93 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 152
Query: 348 TENKPPED 355
T++K ED
Sbjct: 153 TQDKSRED 160
>gi|393216771|gb|EJD02261.1| GTP binding protein [Fomitiporia mediterranea MF3/22]
Length = 215
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 125/229 (54%), Positives = 147/229 (64%), Gaps = 65/229 (28%)
Query: 3 SSGDFGN-PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
+S DF + PL++ K+V LG+QSVGKTSL ITRFMYD+F
Sbjct: 8 ASADFSSSPLKRTKIVLLGDQSVGKTSL-----------------------ITRFMYDTF 44
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VA+VV+DITN
Sbjct: 45 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVFDITNR 104
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF T KWID+VR+ERG+DVII+LV
Sbjct: 105 QSFLSTRKWIDEVRSERGNDVIIVLV---------------------------------- 130
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNK DLSDKR+V+ E+ + A EL +MF+ETSAKAG+NVK +
Sbjct: 131 -------GNKADLSDKREVTLEQAQELADELKIMFMETSAKAGHNVKSL 172
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/119 (72%), Positives = 104/119 (87%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VA+VV+DITN SF T KWID+VR+ERG+DV
Sbjct: 66 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVFDITNRQSFLSTRKWIDEVRSERGNDV 125
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II+LVGNK DLSDKR+V+ E+ + A EL +MF+ETSAKAG+NVK LFR++A ALPGM+
Sbjct: 126 IIVLVGNKADLSDKREVTLEQAQELADELKIMFMETSAKAGHNVKSLFRKIALALPGME 184
>gi|297821449|ref|XP_002878607.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297324446|gb|EFH54866.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 207
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 126/222 (56%), Positives = 141/222 (63%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+PL K+KLVFLG+QSVGKTS+I TRFMYD FD TYQAT
Sbjct: 5 SPLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDTTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD+ N SF TS
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVANRLSFLNTS 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI++VRTER DVII+L V
Sbjct: 102 KWIEEVRTERAGDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL +KRQVS EEG+ K +E VMFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVEKRQVSIEEGDSKGREYGVMFIETSAKAGFNIKPL 162
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 108/128 (84%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD+ N SF TSKWI++VRTER DV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVANRLSFLNTSKWIEEVRTERAGDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL +KRQVS EEG+ K +E VMFIETSAKAG+N+K LFR++AAALPGM+S
Sbjct: 116 IIVLVGNKTDLVEKRQVSIEEGDSKGREYGVMFIETSAKAGFNIKPLFRKIAAALPGMES 175
Query: 348 TENKPPED 355
N ED
Sbjct: 176 YSNTKNED 183
>gi|356538150|ref|XP_003537567.1| PREDICTED: ras-related protein RABH1e-like [Glycine max]
Length = 233
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 124/221 (56%), Positives = 142/221 (64%), Gaps = 64/221 (28%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
PL K+KLVFLG+QSVGKTS+I TRFMYD FD YQATI
Sbjct: 32 PLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDTNYQATI 68
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ N SF T+K
Sbjct: 69 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTNK 128
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
WI++VRTERGSDVII+L VG
Sbjct: 129 WIEEVRTERGSDVIIVL-----------------------------------------VG 147
Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NKTDL +KRQVS EEG+ K++E +MFIETSAKAG+N+K +
Sbjct: 148 NKTDLVEKRQVSIEEGDAKSRESGIMFIETSAKAGFNIKPL 188
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 111/128 (86%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ N SF T+KWI++VRTERGSDV
Sbjct: 82 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTNKWIEEVRTERGSDV 141
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL +KRQVS EEG+ K++E +MFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 142 IIVLVGNKTDLVEKRQVSIEEGDAKSRESGIMFIETSAKAGFNIKPLFRKIAAALPGMET 201
Query: 348 TENKPPED 355
+ ED
Sbjct: 202 LSSTKQED 209
>gi|357017139|gb|AET50598.1| hypothetical protein [Eimeria tenella]
Length = 207
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 125/218 (57%), Positives = 140/218 (64%), Gaps = 64/218 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K+KLVFLGEQ+VGKTS+I TRFMYD+FDN YQATIG
Sbjct: 7 LNKYKLVFLGEQAVGKTSII-----------------------TRFMYDTFDNNYQATIG 43
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKT+YLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+ AVVVYDITN SF T+KW
Sbjct: 44 IDFLSKTLYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSAAVVVYDITNRASFINTTKW 103
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
I+DV ERG DV+I L VGN
Sbjct: 104 IEDVWAERGKDVVIAL-----------------------------------------VGN 122
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
KTDLSD+RQVS EEGE+KA+E ++FIETSAKAG+NVK
Sbjct: 123 KTDLSDRRQVSPEEGEQKAREQGILFIETSAKAGHNVK 160
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/123 (73%), Positives = 108/123 (87%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+ AVVVYDITN SF T+KWI+DV ERG DV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSAAVVVYDITNRASFINTTKWIEDVWAERGKDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+I LVGNKTDLSD+RQVS EEGE+KA+E ++FIETSAKAG+NVK LFR++AAALPG+++
Sbjct: 116 VIALVGNKTDLSDRRQVSPEEGEQKAREQGILFIETSAKAGHNVKTLFRKLAAALPGLET 175
Query: 348 TEN 350
++
Sbjct: 176 QQS 178
>gi|322709933|gb|EFZ01508.1| RAS small monomeric GTPase Rab6 [Metarhizium anisopliae ARSEF 23]
Length = 234
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 128/229 (55%), Positives = 149/229 (65%), Gaps = 45/229 (19%)
Query: 3 SSGDFGNPLRKFKLVFL-GEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
+ G + NPL+KFK + G T M +Y VGKTSLITRFMYDSF
Sbjct: 4 AGGSYNNPLKKFKYAGVPGGAEWQDTHNPIPGMSMELIPSYA---VGKTSLITRFMYDSF 60
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DN YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 61 DNMYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNA 120
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF T KWIDDVR ERG+DVII+L
Sbjct: 121 KSFQNTKKWIDDVRAERGNDVIIVL----------------------------------- 145
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL++KR+V+T++GE +AK+ N+MF+ETSAK G+NVK +
Sbjct: 146 ------VGNKTDLNEKREVTTQQGEDEAKKNNLMFMETSAKLGHNVKNL 188
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 89/120 (74%), Positives = 108/120 (90%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DV
Sbjct: 82 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTKKWIDDVRAERGNDV 141
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL++KR+V+T++GE +AK+ N+MF+ETSAK G+NVK LF+R+A ALPGM+
Sbjct: 142 IIVLVGNKTDLNEKREVTTQQGEDEAKKNNLMFMETSAKLGHNVKNLFKRIAQALPGMEG 201
>gi|389749162|gb|EIM90339.1| ras-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 214
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 121/220 (55%), Positives = 144/220 (65%), Gaps = 64/220 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L++ K+V LG+QSVGKTSL ITRFMYD+FDNTYQATIG
Sbjct: 17 LKRTKIVLLGDQSVGKTSL-----------------------ITRFMYDTFDNTYQATIG 53
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKT+YL+DRTVRLQLWDTAGQERFRSLIPSYIRDSTVA+VV+DITN SF T+KW
Sbjct: 54 IDFLSKTLYLDDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAIVVFDITNRASFMSTTKW 113
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
IDDVR+ERG+DV+++L VGN
Sbjct: 114 IDDVRSERGNDVMVVL-----------------------------------------VGN 132
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
K DLSDKRQV+ EE K+++LN+MF+ETSAKAG+NVK +
Sbjct: 133 KADLSDKRQVTLEEATAKSQQLNIMFMETSAKAGHNVKSL 172
Score = 193 bits (491), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 89/127 (70%), Positives = 111/127 (87%), Gaps = 1/127 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVA+VV+DITN SF T+KWIDDVR+ERG+DV
Sbjct: 66 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAIVVFDITNRASFMSTTKWIDDVRSERGNDV 125
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+++LVGNK DLSDKRQV+ EE K+++LN+MF+ETSAKAG+NVK LF+++A +LPGM+
Sbjct: 126 MVVLVGNKADLSDKRQVTLEEATAKSQQLNIMFMETSAKAGHNVKSLFKKIAMSLPGMEK 185
Query: 348 TENKPPE 354
EN+ E
Sbjct: 186 -ENQNAE 191
>gi|397611796|gb|EJK61478.1| hypothetical protein THAOC_18027, partial [Thalassiosira oceanica]
Length = 307
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 127/222 (57%), Positives = 143/222 (64%), Gaps = 65/222 (29%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
PL K+KLVFLG+QSVGKTS+I TRFMYD+FD YQATI
Sbjct: 100 PLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDNFDRHYQATI 136
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD+TN SF TSK
Sbjct: 137 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVTNRASFLNTSK 196
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
W++DVR ERG+DV+I L VG
Sbjct: 197 WVEDVRAERGNDVVICL-----------------------------------------VG 215
Query: 190 NKTDL-SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NKTDL +DKRQVSTEEGE KA + N++F+E SAKAGYNVK +
Sbjct: 216 NKTDLGNDKRQVSTEEGEEKATKDNLLFMECSAKAGYNVKSL 257
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 90/121 (74%), Positives = 106/121 (87%), Gaps = 1/121 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD+TN SF TSKW++DVR ERG+DV
Sbjct: 150 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVTNRASFLNTSKWVEDVRAERGNDV 209
Query: 288 IIMLVGNKTDL-SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
+I LVGNKTDL +DKRQVSTEEGE KA + N++F+E SAKAGYNVK LFR++A +LPG D
Sbjct: 210 VICLVGNKTDLGNDKRQVSTEEGEEKATKDNLLFMECSAKAGYNVKSLFRKLATSLPGTD 269
Query: 347 S 347
+
Sbjct: 270 A 270
>gi|303277025|ref|XP_003057806.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460463|gb|EEH57757.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 215
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 121/221 (54%), Positives = 143/221 (64%), Gaps = 64/221 (28%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
P+ K+KLVFLG+QSVGKTS+I+ RFMYD FDN+YQATI
Sbjct: 8 PMAKYKLVFLGDQSVGKTSVIS-----------------------RFMYDKFDNSYQATI 44
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD+++ SF ++
Sbjct: 45 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSSRASFLNCAR 104
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
WID+VRTERGSDVII+L VG
Sbjct: 105 WIDEVRTERGSDVIIVL-----------------------------------------VG 123
Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NKTDL ++R+VS EEG+ +A+E VMFIE SAKAG+NVK +
Sbjct: 124 NKTDLVERREVSVEEGDARAREHGVMFIECSAKAGFNVKAL 164
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 85/116 (73%), Positives = 103/116 (88%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD+++ SF ++WID+VRTERGSDV
Sbjct: 58 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSSRASFLNCARWIDEVRTERGSDV 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
II+LVGNKTDL ++R+VS EEG+ +A+E VMFIE SAKAG+NVK LFR++AAALP
Sbjct: 118 IIVLVGNKTDLVERREVSVEEGDARAREHGVMFIECSAKAGFNVKALFRKIAAALP 173
>gi|218199658|gb|EEC82085.1| hypothetical protein OsI_26083 [Oryza sativa Indica Group]
Length = 244
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 129/231 (55%), Positives = 154/231 (66%), Gaps = 46/231 (19%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ L K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQAT
Sbjct: 5 SALAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+V+D+ + SF TS
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQSFLNTS 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFH----HANSFHQTS-----KWIDDVRTER 179
KWI++VRTERGSDVII+LVG+ +T+ S++ N+ Q S WI ++
Sbjct: 102 KWIEEVRTERGSDVIIVLVGN-KTDLVDKSYYAMIEQYNNLAQNSLPYNFSWI-KLKVCD 159
Query: 180 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
+M QVS EEGE KAK+L VMFIETSAKAG+N+K +
Sbjct: 160 SKQCHVM------------QVSIEEGEGKAKDLGVMFIETSAKAGFNIKAL 198
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/164 (57%), Positives = 111/164 (67%), Gaps = 36/164 (21%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+V+D+ + SF TSKWI++VRTERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQSFLNTSKWIEEVRTERGSDV 115
Query: 288 IIMLVGNKTDLSDKR------------------------------------QVSTEEGER 311
II+LVGNKTDL DK QVS EEGE
Sbjct: 116 IIVLVGNKTDLVDKSYYAMIEQYNNLAQNSLPYNFSWIKLKVCDSKQCHVMQVSIEEGEG 175
Query: 312 KAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTENKPPED 355
KAK+L VMFIETSAKAG+N+K LFR++AAALPGM++ + ED
Sbjct: 176 KAKDLGVMFIETSAKAGFNIKALFRKIAAALPGMETLSSAKQED 219
>gi|222637080|gb|EEE67212.1| hypothetical protein OsJ_24329 [Oryza sativa Japonica Group]
Length = 244
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 128/231 (55%), Positives = 152/231 (65%), Gaps = 46/231 (19%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ L K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQAT
Sbjct: 5 SALAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+V+D+ + SF TS
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQSFLNTS 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHA---------NSFHQTSKWIDDVRTER 179
KWI++VRTERGSDVII+LVG+ +T+ S++ NS WI ++
Sbjct: 102 KWIEEVRTERGSDVIIVLVGN-KTDLVDKSYYAMIEQYDNLAQNSLPYNFSWI-KLKVCD 159
Query: 180 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
+M QVS EEGE KAK+L VMFIETSAKAG+N+K +
Sbjct: 160 SKQCHVM------------QVSIEEGEGKAKDLGVMFIETSAKAGFNIKAL 198
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/164 (57%), Positives = 111/164 (67%), Gaps = 36/164 (21%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+V+D+ + SF TSKWI++VRTERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQSFLNTSKWIEEVRTERGSDV 115
Query: 288 IIMLVGNKTDLSDKR------------------------------------QVSTEEGER 311
II+LVGNKTDL DK QVS EEGE
Sbjct: 116 IIVLVGNKTDLVDKSYYAMIEQYDNLAQNSLPYNFSWIKLKVCDSKQCHVMQVSIEEGEG 175
Query: 312 KAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTENKPPED 355
KAK+L VMFIETSAKAG+N+K LFR++AAALPGM++ + ED
Sbjct: 176 KAKDLGVMFIETSAKAGFNIKALFRKIAAALPGMETLSSAKQED 219
>gi|15227173|ref|NP_179816.1| RAB GTPase-like protein H1D [Arabidopsis thaliana]
gi|75337262|sp|Q9SID8.1|RAH1D_ARATH RecName: Full=Ras-related protein RABH1d; Short=AtRABH1d
gi|4567198|gb|AAD23614.1| putative GTP-binding protein [Arabidopsis thaliana]
gi|330252194|gb|AEC07288.1| RAB GTPase-like protein H1D [Arabidopsis thaliana]
Length = 207
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 125/222 (56%), Positives = 140/222 (63%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+PL K+KLVFLG+QSVGKTS+I TRFMYD FD TYQAT
Sbjct: 5 SPLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDTTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD+ N SF TS
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVANRLSFLNTS 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI++VR ER DVII+L V
Sbjct: 102 KWIEEVRNERAGDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL +KRQVS EEG+ K +E VMFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVEKRQVSIEEGDSKGREYGVMFIETSAKAGFNIKPL 162
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 107/128 (83%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD+ N SF TSKWI++VR ER DV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVANRLSFLNTSKWIEEVRNERAGDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL +KRQVS EEG+ K +E VMFIETSAKAG+N+K LFR++AAALPGM+S
Sbjct: 116 IIVLVGNKTDLVEKRQVSIEEGDSKGREYGVMFIETSAKAGFNIKPLFRKIAAALPGMES 175
Query: 348 TENKPPED 355
N ED
Sbjct: 176 YSNTKNED 183
>gi|449018630|dbj|BAM82032.1| small GTP-binding protein of Rab family, Rab6 [Cyanidioschyzon
merolae strain 10D]
Length = 211
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 125/229 (54%), Positives = 145/229 (63%), Gaps = 64/229 (27%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
+ +G L K+KLVFLG+Q+VGKTS+I TRFMYD F
Sbjct: 3 TQAGATAAALSKYKLVFLGDQAVGKTSII-----------------------TRFMYDKF 39
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DN YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD+T+
Sbjct: 40 DNNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVTSR 99
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF T+KWI++VR ERG++VII+L
Sbjct: 100 RSFLNTAKWIEEVRNERGNEVIIVL----------------------------------- 124
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNK+D +DKRQVS EEGE KAKEL+V+FIETSAK G NVK +
Sbjct: 125 ------VGNKSDQNDKRQVSVEEGEAKAKELDVLFIETSAKTGANVKAL 167
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 88/116 (75%), Positives = 104/116 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD+T+ SF T+KWI++VR ERG++V
Sbjct: 61 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVTSRRSFLNTAKWIEEVRNERGNEV 120
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
II+LVGNK+D +DKRQVS EEGE KAKEL+V+FIETSAK G NVK LFR++AAALP
Sbjct: 121 IIVLVGNKSDQNDKRQVSVEEGEAKAKELDVLFIETSAKTGANVKALFRKIAAALP 176
>gi|168057732|ref|XP_001780867.1| Rab6/RabH-family small GTPase [Physcomitrella patens subsp. patens]
gi|162667723|gb|EDQ54346.1| Rab6/RabH-family small GTPase [Physcomitrella patens subsp. patens]
Length = 210
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/222 (54%), Positives = 142/222 (63%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+PL K+KLVFLG+QSVGKTS+I TRFMYD FD TYQ T
Sbjct: 7 SPLSKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDQTYQPT 43
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD++N SF T+
Sbjct: 44 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVSNRQSFVNTA 103
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
+W+++VR ERG DV+++L V
Sbjct: 104 RWVEEVRAERGKDVVLVL-----------------------------------------V 122
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQVS EEGE KA+EL+ + IETSAKAG+N+K +
Sbjct: 123 GNKTDLVDKRQVSVEEGETKARELSALMIETSAKAGFNIKSL 164
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 86/128 (67%), Positives = 108/128 (84%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD++N SF T++W+++VR ERG DV
Sbjct: 58 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVSNRQSFVNTARWVEEVRAERGKDV 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+++LVGNKTDL DKRQVS EEGE KA+EL+ + IETSAKAG+N+K LFR++A ALPGM+S
Sbjct: 118 VLVLVGNKTDLVDKRQVSVEEGETKARELSALMIETSAKAGFNIKSLFRKIAGALPGMES 177
Query: 348 TENKPPED 355
+D
Sbjct: 178 VNPSKQDD 185
>gi|223997454|ref|XP_002288400.1| rab-like rab-type small G protein [Thalassiosira pseudonana
CCMP1335]
gi|220975508|gb|EED93836.1| rab-like rab-type small G protein [Thalassiosira pseudonana
CCMP1335]
Length = 202
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 126/222 (56%), Positives = 142/222 (63%), Gaps = 65/222 (29%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
PL K+KLVFLG+QSVGKTS+I TRFMYD+FD YQATI
Sbjct: 26 PLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDNFDRHYQATI 62
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD+TN SF TSK
Sbjct: 63 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVTNRASFLNTSK 122
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
W++DVR ERG+DV+I L VG
Sbjct: 123 WVEDVRAERGNDVVICL-----------------------------------------VG 141
Query: 190 NKTDL-SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NKTDL +DKRQVSTEEGE KA + ++F+E SAKAGYNVK +
Sbjct: 142 NKTDLGNDKRQVSTEEGEEKASKDGLLFMECSAKAGYNVKSL 183
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/123 (72%), Positives = 105/123 (85%), Gaps = 1/123 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD+TN SF TSKW++DVR ERG+DV
Sbjct: 76 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVTNRASFLNTSKWVEDVRAERGNDV 135
Query: 288 IIMLVGNKTDL-SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
+I LVGNKTDL +DKRQVSTEEGE KA + ++F+E SAKAGYNVK LFR++A +LPG
Sbjct: 136 VICLVGNKTDLGNDKRQVSTEEGEEKASKDGLLFMECSAKAGYNVKSLFRKLATSLPGKQ 195
Query: 347 STE 349
S +
Sbjct: 196 SKQ 198
>gi|388512653|gb|AFK44388.1| unknown [Medicago truncatula]
Length = 207
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/222 (54%), Positives = 142/222 (63%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+PL K+KLVFLG++SVGKTS+I TRFMYD FD TYQAT
Sbjct: 5 SPLAKYKLVFLGDRSVGKTSII-----------------------TRFMYDKFDTTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQ WDTAGQERFRSLIPSYIRDS+VAV+VYD+ N SF T+
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQPWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTN 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KW+++VR ERGSDVII+L V
Sbjct: 102 KWVEEVRQERGSDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL +KRQVS EEG+ K+KE +MFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVEKRQVSIEEGDAKSKEFGIMFIETSAKAGFNIKPL 162
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 88/128 (68%), Positives = 109/128 (85%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQ WDTAGQERFRSLIPSYIRDS+VAV+VYD+ N SF T+KW+++VR ERGSDV
Sbjct: 56 RTVRLQPWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTNKWVEEVRQERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL +KRQVS EEG+ K+KE +MFIETSAKAG+N+K LFR++A+ALPGM++
Sbjct: 116 IIVLVGNKTDLVEKRQVSIEEGDAKSKEFGIMFIETSAKAGFNIKPLFRKIASALPGMET 175
Query: 348 TENKPPED 355
+ ED
Sbjct: 176 LSSTNKED 183
>gi|126644156|ref|XP_001388214.1| RAB6 protein [Cryptosporidium parvum Iowa II]
gi|126117287|gb|EAZ51387.1| RAB6 protein, putative [Cryptosporidium parvum Iowa II]
Length = 219
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/229 (54%), Positives = 142/229 (62%), Gaps = 64/229 (27%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
N + KFK VFLGEQSVGKTS+I TRFMYD+FDN YQAT
Sbjct: 8 NQISKFKFVFLGEQSVGKTSII-----------------------TRFMYDTFDNNYQAT 44
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKT+YLEDRT+RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN ++F T+
Sbjct: 45 IGIDFLSKTLYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRSTFLNTT 104
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI+DVR ERG DVII L +
Sbjct: 105 KWIEDVRNERGKDVIISL-----------------------------------------I 123
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDT 237
GNK DL D+RQV EE E+ A+E N+MFIETSAK GYN+K + +L T
Sbjct: 124 GNKADLEDRRQVKYEEAEKLAQENNIMFIETSAKNGYNIKSLFKKLAST 172
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 83/119 (69%), Positives = 101/119 (84%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN ++F T+KWI+DVR ERG DV
Sbjct: 59 RTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRSTFLNTTKWIEDVRNERGKDV 118
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II L+GNK DL D+RQV EE E+ A+E N+MFIETSAK GYN+K LF+++A+ LP +D
Sbjct: 119 IISLIGNKADLEDRRQVKYEEAEKLAQENNIMFIETSAKNGYNIKSLFKKLASTLPNLD 177
>gi|219122405|ref|XP_002181536.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406812|gb|EEC46750.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 236
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/226 (54%), Positives = 145/226 (64%), Gaps = 65/226 (28%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
PL K+KLVFLG+QSVGKTS+I TRFMYD+FD YQATI
Sbjct: 30 PLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDNFDRHYQATI 66
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD++N +SF T+K
Sbjct: 67 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSNRSSFLNTAK 126
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
W++DVR ERG+DV+I L VG
Sbjct: 127 WVEDVRAERGNDVVICL-----------------------------------------VG 145
Query: 190 NKTDL-SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NKTDL +DKRQVSTEEGE +A + ++F+E SAKAGYNVK + +L
Sbjct: 146 NKTDLGNDKRQVSTEEGEERATKDGLLFMECSAKAGYNVKSLFRKL 191
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 86/118 (72%), Positives = 104/118 (88%), Gaps = 1/118 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD++N +SF T+KW++DVR ERG+DV
Sbjct: 80 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSNRSSFLNTAKWVEDVRAERGNDV 139
Query: 288 IIMLVGNKTDL-SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
+I LVGNKTDL +DKRQVSTEEGE +A + ++F+E SAKAGYNVK LFR++A ALPG
Sbjct: 140 VICLVGNKTDLGNDKRQVSTEEGEERATKDGLLFMECSAKAGYNVKSLFRKLATALPG 197
>gi|340521862|gb|EGR52096.1| Ras-like GTP-binding protein [Trichoderma reesei QM6a]
Length = 203
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/228 (54%), Positives = 143/228 (62%), Gaps = 69/228 (30%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
+ G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSFD
Sbjct: 4 AGGSYNNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFD 40
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
N YQATIGIDFLSK DRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 41 NMYQATIGIDFLSK-----DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAK 95
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF T KWIDDVR ERG+DVII+L
Sbjct: 96 SFQNTKKWIDDVRAERGNDVIIVL------------------------------------ 119
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR+V+T++GE +AK + F+ETSAK G+NV+ +
Sbjct: 120 -----VGNKTDLNDKREVTTQQGEEEAKRQGLRFVETSAKLGHNVQNL 162
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 87/122 (71%), Positives = 107/122 (87%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTKKWIDDVRAERGNDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKR+V+T++GE +AK + F+ETSAK G+NV+ LF+R+A ALPGM+
Sbjct: 116 IIVLVGNKTDLNDKREVTTQQGEEEAKRQGLRFVETSAKLGHNVQNLFKRIAQALPGMEG 175
Query: 348 TE 349
++
Sbjct: 176 SD 177
>gi|428180040|gb|EKX48909.1| hypothetical protein GUITHDRAFT_151724 [Guillardia theta CCMP2712]
Length = 207
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 122/225 (54%), Positives = 140/225 (62%), Gaps = 64/225 (28%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
PL K+KLVFLG+QSVGKTS+I TRFMYD FD+TYQATI
Sbjct: 9 PLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDSTYQATI 45
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
GIDFLSKTMYL+DR VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+TN SF K
Sbjct: 46 GIDFLSKTMYLDDRVVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVTNRESFDNAGK 105
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
WID+VR ERG DVI+ L VG
Sbjct: 106 WIDEVRQERGEDVILAL-----------------------------------------VG 124
Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NKTDL++KR+V+ EEGE KAK ++F+ETSAKAG NVK + QL
Sbjct: 125 NKTDLAEKRRVTREEGEEKAKSFKILFVETSAKAGLNVKSLFRQL 169
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/122 (68%), Positives = 100/122 (81%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+TN SF KWID+VR ERG DVI+
Sbjct: 61 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVTNRESFDNAGKWIDEVRQERGEDVIL 120
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
LVGNKTDL++KR+V+ EEGE KAK ++F+ETSAKAG NVK LFR++A LPG ++
Sbjct: 121 ALVGNKTDLAEKRRVTREEGEEKAKSFKILFVETSAKAGLNVKSLFRQLAQQLPGAENAA 180
Query: 350 NK 351
K
Sbjct: 181 VK 182
>gi|167998402|ref|XP_001751907.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697005|gb|EDQ83342.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 204
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 126/222 (56%), Positives = 140/222 (63%), Gaps = 69/222 (31%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+PL K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQAT
Sbjct: 9 SPLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQAT 45
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD SF T
Sbjct: 46 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD-----SFLNTV 100
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
+W+++VRTERGSDVIIML V
Sbjct: 101 RWVEEVRTERGSDVIIML-----------------------------------------V 119
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQVS EEG+ KA E VMFIETS+ AG+N+K +
Sbjct: 120 GNKTDLVDKRQVSVEEGDAKANEFGVMFIETSSNAGFNIKAL 161
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 89/120 (74%), Positives = 103/120 (85%), Gaps = 5/120 (4%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD SF T +W+++VRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD-----SFLNTVRWVEEVRTERGSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL DKRQVS EEG+ KA E VMFIETS+ AG+N+K LFR++AAALPGM++
Sbjct: 115 IIMLVGNKTDLVDKRQVSVEEGDAKANEFGVMFIETSSNAGFNIKALFRKIAAALPGMEA 174
>gi|358378155|gb|EHK15837.1| secretion-related small GTPase [Trichoderma virens Gv29-8]
Length = 203
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/228 (54%), Positives = 143/228 (62%), Gaps = 69/228 (30%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
+ G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSFD
Sbjct: 4 TGGSYNNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFD 40
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
N YQATIGIDFLSK DRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 41 NMYQATIGIDFLSK-----DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAK 95
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF T KWIDDVR ERG+DVII+L
Sbjct: 96 SFQNTKKWIDDVRAERGNDVIIVL------------------------------------ 119
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR+V+T++GE +AK + F+ETSAK G+NV+ +
Sbjct: 120 -----VGNKTDLNDKREVTTQQGEEEAKRQGLRFVETSAKLGHNVQNL 162
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 87/122 (71%), Positives = 107/122 (87%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTKKWIDDVRAERGNDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKR+V+T++GE +AK + F+ETSAK G+NV+ LF+R+A ALPGM+
Sbjct: 116 IIVLVGNKTDLNDKREVTTQQGEEEAKRQGLRFVETSAKLGHNVQNLFKRIAQALPGMEG 175
Query: 348 TE 349
++
Sbjct: 176 SD 177
>gi|300120200|emb|CBK19754.2| unnamed protein product [Blastocystis hominis]
Length = 219
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 122/218 (55%), Positives = 137/218 (62%), Gaps = 64/218 (29%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
PL K+KLVFLG+ VGKTS+I TRFMYD+FD++YQATI
Sbjct: 19 PLEKYKLVFLGDPGVGKTSII-----------------------TRFMYDTFDSSYQATI 55
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
GIDFLSKTMYL+DRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+TN SF T K
Sbjct: 56 GIDFLSKTMYLDDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDLTNRTSFENTRK 115
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
W+ DVR ERG DV+I+L VG
Sbjct: 116 WLSDVRVERGDDVVIVL-----------------------------------------VG 134
Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 227
NKTDLSD RQVST EGE AKELNV+FIETSAK +NV
Sbjct: 135 NKTDLSDSRQVSTNEGEALAKELNVLFIETSAKCNFNV 172
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 103/128 (80%), Gaps = 4/128 (3%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+TN SF T KW+ DVR ERG DV
Sbjct: 69 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDLTNRTSFENTRKWLSDVRVERGDDV 128
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+I+LVGNKTDLSD RQVST EGE AKELNV+FIETSAK +NV LFR+VA LPG
Sbjct: 129 VIVLVGNKTDLSDSRQVSTNEGEALAKELNVLFIETSAKCNFNVTALFRKVATTLPG--- 185
Query: 348 TENKPPED 355
E KP ++
Sbjct: 186 -EGKPKKE 192
>gi|326503002|dbj|BAJ99126.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 298
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 120/220 (54%), Positives = 139/220 (63%), Gaps = 64/220 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K+KLVFLG+Q+VGKT++I TRFMYD FD TYQATIG
Sbjct: 92 LAKYKLVFLGDQAVGKTAII-----------------------TRFMYDKFDATYQATIG 128
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+T+ SF TSKW
Sbjct: 129 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVTDTQSFLHTSKW 188
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
ID+V T RG DV+I+L VGN
Sbjct: 189 IDEVNTARGKDVLIVL-----------------------------------------VGN 207
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
KTDL D+RQV T+EGE KAKE +F+ETSAKAG+N+K +
Sbjct: 208 KTDLVDQRQVPTDEGEAKAKEHGALFMETSAKAGFNIKAL 247
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 89/128 (69%), Positives = 107/128 (83%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+T+ SF TSKWID+V T RG DV
Sbjct: 141 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVTDTQSFLHTSKWIDEVNTARGKDV 200
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+I+LVGNKTDL D+RQV T+EGE KAKE +F+ETSAKAG+N+K LFR +AA+LPGMD+
Sbjct: 201 LIVLVGNKTDLVDQRQVPTDEGEAKAKEHGALFMETSAKAGFNIKALFRTIAASLPGMDA 260
Query: 348 TENKPPED 355
+ ED
Sbjct: 261 VSSAKQED 268
>gi|348501272|ref|XP_003438194.1| PREDICTED: ras-related protein Rab-6B-like isoform 2 [Oreochromis
niloticus]
Length = 185
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 130/230 (56%), Positives = 137/230 (59%), Gaps = 87/230 (37%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GD GNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDLGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV------ 91
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
RGSDVIIML
Sbjct: 92 -----------------RGSDVIIML---------------------------------- 100
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL +KRQ++ EEGE++AKELNVMFIETSAK G NVKQ+
Sbjct: 101 -------VGNKTDLEEKRQITIEEGEQRAKELNVMFIETSAKTGCNVKQL 143
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 96/127 (75%), Gaps = 23/127 (18%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVV RGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV-----------------------RGSDV 96
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL +KRQ++ EEGE++AKELNVMFIETSAK G NVKQLFRRVAAALPGM+S
Sbjct: 97 IIMLVGNKTDLEEKRQITIEEGEQRAKELNVMFIETSAKTGCNVKQLFRRVAAALPGMES 156
Query: 348 TENKPPE 354
++ PE
Sbjct: 157 LDDANPE 163
>gi|440472892|gb|ELQ41722.1| GTP-binding protein ryh1 [Magnaporthe oryzae Y34]
gi|440483954|gb|ELQ64166.1| GTP-binding protein ryh1 [Magnaporthe oryzae P131]
Length = 216
Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 126/236 (53%), Positives = 145/236 (61%), Gaps = 71/236 (30%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
S +G + NPL+KFKLVFLGEQSVGKTSL ITRFMYDSF
Sbjct: 4 SGTGAYNNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSF 40
Query: 62 DNTYQATIGIDFLSKTMYLE-------DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 114
D YQATIGIDFLSK + TVRLQLWDTAGQERFRSLIPSYIRDS+VAVV
Sbjct: 41 DGMYQATIGIDFLSKASKPPAHPHRSSESTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 100
Query: 115 VYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDD 174
VYDI+NA SF T KWIDDVR ERG+DVII+L
Sbjct: 101 VYDISNAKSFQNTRKWIDDVRAERGNDVIIVL---------------------------- 132
Query: 175 VRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR+V+T++GE +AK+ N+MFIETSAK G+NV+ +
Sbjct: 133 -------------VGNKTDLNDKREVTTQQGEEEAKKNNLMFIETSAKVGHNVQPL 175
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 91/120 (75%), Positives = 109/120 (90%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DVII
Sbjct: 71 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRAERGNDVII 130
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
+LVGNKTDL+DKR+V+T++GE +AK+ N+MFIETSAK G+NV+ LF+R+A +LPGM+ TE
Sbjct: 131 VLVGNKTDLNDKREVTTQQGEEEAKKNNLMFIETSAKVGHNVQPLFKRIARSLPGMEGTE 190
>gi|156049367|ref|XP_001590650.1| hypothetical protein SS1G_08390 [Sclerotinia sclerotiorum 1980]
gi|154692789|gb|EDN92527.1| hypothetical protein SS1G_08390 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 186
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 118/182 (64%), Positives = 130/182 (71%), Gaps = 41/182 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTSLITRFMYDSFDN YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI
Sbjct: 4 VGKTSLITRFMYDSFDNMYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 63
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
RDS+VAVVVYDI+N SF T KW+DDVR ERG+DVII+L
Sbjct: 64 RDSSVAVVVYDISNRKSFQNTRKWVDDVRGERGNDVIIVL-------------------- 103
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
VGNKTDL+DKR+V+T EGE +AK+ N+MFIETSAK G+N
Sbjct: 104 ---------------------VGNKTDLNDKREVTTSEGEEEAKKNNLMFIETSAKLGHN 142
Query: 227 VK 228
VK
Sbjct: 143 VK 144
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 92/123 (74%), Positives = 108/123 (87%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+N SF T KW+DDVR ERG+DV
Sbjct: 40 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNRKSFQNTRKWVDDVRGERGNDV 99
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKR+V+T EGE +AK+ N+MFIETSAK G+NVK LFRR+A ALPGM+
Sbjct: 100 IIVLVGNKTDLNDKREVTTSEGEEEAKKNNLMFIETSAKLGHNVKTLFRRIAQALPGMEG 159
Query: 348 TEN 350
+N
Sbjct: 160 ADN 162
>gi|354470906|ref|XP_003497685.1| PREDICTED: ras-related protein Rab-6B-like, partial [Cricetulus
griseus]
Length = 165
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 107/127 (84%), Positives = 118/127 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 17 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 76
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQLFRRVA+ALPGM++
Sbjct: 77 IIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMEN 136
Query: 348 TENKPPE 354
+ K E
Sbjct: 137 VQEKSKE 143
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 112/164 (68%), Positives = 119/164 (72%), Gaps = 41/164 (25%)
Query: 67 ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 126
ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF Q
Sbjct: 1 ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQ 60
Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
TSKWIDDVRTERGSDVIIML
Sbjct: 61 TSKWIDDVRTERGSDVIIML---------------------------------------- 80
Query: 187 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQ+
Sbjct: 81 -VGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQL 123
>gi|443914817|gb|ELU36556.1| ryh1 [Rhizoctonia solani AG-1 IA]
Length = 189
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 124/229 (54%), Positives = 149/229 (65%), Gaps = 70/229 (30%)
Query: 3 SSGDFGN-PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
++ DF + PL++ K+V LG+QSVGKTSL ITRFMYD+F
Sbjct: 6 ATADFTSAPLKRTKIVLLGDQSVGKTSL-----------------------ITRFMYDTF 42
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DNTYQATIGIDFLSKTMYL+DRTVRLQLWDTAGQERFRSLIPSYIRDS+VA+VVYDIT+
Sbjct: 43 DNTYQATIGIDFLSKTMYLDDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDITS- 101
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
+++KWIDDVR+ERG+DVII+L
Sbjct: 102 ----ESAKWIDDVRSERGTDVIIVL----------------------------------- 122
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNK DLSDKRQV+ EE ++A ELN+MF+ETSAKAG+NVK +
Sbjct: 123 ------VGNKADLSDKRQVTMEEATQRANELNIMFMETSAKAGHNVKTL 165
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 85/119 (71%), Positives = 106/119 (89%), Gaps = 5/119 (4%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VA+VVYDIT+ +++KWIDDVR+ERG+DV
Sbjct: 64 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDITS-----ESAKWIDDVRSERGTDV 118
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II+LVGNK DLSDKRQV+ EE ++A ELN+MF+ETSAKAG+NVK LF+++A +LPGM+
Sbjct: 119 IIVLVGNKADLSDKRQVTMEEATQRANELNIMFMETSAKAGHNVKTLFKKIAMSLPGME 177
>gi|402225252|gb|EJU05313.1| ras-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 215
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 123/227 (54%), Positives = 146/227 (64%), Gaps = 65/227 (28%)
Query: 3 SSGDFGN-PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
+SG F PL++ K+V LG+QSVGKTSL ITRFMYD+F
Sbjct: 7 TSGSFSALPLKRTKIVLLGDQSVGKTSL-----------------------ITRFMYDTF 43
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
D TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VA+VV+DITN
Sbjct: 44 DQTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVFDITNR 103
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF T+KWIDDVR+ERG DVII+L
Sbjct: 104 ASFLSTTKWIDDVRSERGGDVIIVL----------------------------------- 128
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNK DLS+ RQV+ EE ++K+ EL+++++ETSAKAG+NVK
Sbjct: 129 ------VGNKADLSNDRQVTQEEAQQKSTELDIIYMETSAKAGHNVK 169
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 82/117 (70%), Positives = 103/117 (88%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VA+VV+DITN SF T+KWIDDVR+ERG DV
Sbjct: 65 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVFDITNRASFLSTTKWIDDVRSERGGDV 124
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
II+LVGNK DLS+ RQV+ EE ++K+ EL+++++ETSAKAG+NVK LF+++A LPG
Sbjct: 125 IIVLVGNKADLSNDRQVTQEEAQQKSTELDIIYMETSAKAGHNVKTLFKKIAMLLPG 181
>gi|357113652|ref|XP_003558615.1| PREDICTED: ras-related protein RABH1b-like [Brachypodium
distachyon]
Length = 215
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 123/221 (55%), Positives = 142/221 (64%), Gaps = 65/221 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K+KLVFLG+Q+VGKT++I TRFMYD FD TYQATIG
Sbjct: 8 LAKYKLVFLGDQAVGKTAII-----------------------TRFMYDKFDATYQATIG 44
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+T+ SF TS W
Sbjct: 45 IDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVTDRQSFLHTSTW 104
Query: 131 IDDVRTER-GSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
ID+V+TER G+DV+I+L VG
Sbjct: 105 IDEVKTERAGTDVLIVL-----------------------------------------VG 123
Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NKTDL DKRQV T+EGE KA+E VMFIETSAKAG+NVK +
Sbjct: 124 NKTDLVDKRQVPTDEGEAKAQEHGVMFIETSAKAGFNVKPL 164
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/129 (70%), Positives = 110/129 (85%), Gaps = 1/129 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSD 286
+ +RLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+T+ SF TS WID+V+TER G+D
Sbjct: 57 RTIRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVTDRQSFLHTSTWIDEVKTERAGTD 116
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
V+I+LVGNKTDL DKRQV T+EGE KA+E VMFIETSAKAG+NVK LFR++A +LPGMD
Sbjct: 117 VLIVLVGNKTDLVDKRQVPTDEGEAKAQEHGVMFIETSAKAGFNVKPLFRKIATSLPGMD 176
Query: 347 STENKPPED 355
+ + ED
Sbjct: 177 ALSSAKQED 185
>gi|108706607|gb|ABF94402.1| Ras-related protein Rab-6A, putative, expressed [Oryza sativa
Japonica Group]
Length = 215
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/222 (54%), Positives = 140/222 (63%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ L K+KLVFLG+Q+VGKT++I TRFMYD FD TYQAT
Sbjct: 6 SALAKYKLVFLGDQAVGKTAII-----------------------TRFMYDKFDATYQAT 42
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+T SF S
Sbjct: 43 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVTGKQSFLSIS 102
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI++V T+RG DVII+L V
Sbjct: 103 KWIEEVNTQRGGDVIIVL-----------------------------------------V 121
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQ+ST+EGE KA+E MF+ETSAKAG+N+K +
Sbjct: 122 GNKTDLVDKRQISTDEGEAKAQEHGAMFMETSAKAGFNIKPL 163
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 88/128 (68%), Positives = 108/128 (84%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+T SF SKWI++V T+RG DV
Sbjct: 57 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVTGKQSFLSISKWIEEVNTQRGGDV 116
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL DKRQ+ST+EGE KA+E MF+ETSAKAG+N+K LFR++AA+LPGM++
Sbjct: 117 IIVLVGNKTDLVDKRQISTDEGEAKAQEHGAMFMETSAKAGFNIKPLFRKIAASLPGMEA 176
Query: 348 TENKPPED 355
+ ED
Sbjct: 177 LSSAKQED 184
>gi|326518973|dbj|BAJ92647.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 274
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/220 (54%), Positives = 139/220 (63%), Gaps = 64/220 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K+KLVFLG+Q+VGKT++I TRFMYD FD TYQATIG
Sbjct: 68 LAKYKLVFLGDQAVGKTAII-----------------------TRFMYDKFDATYQATIG 104
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+T+ SF TSKW
Sbjct: 105 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVTDTQSFLHTSKW 164
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
ID+V T RG DV+I+L VGN
Sbjct: 165 IDEVNTARGKDVLIVL-----------------------------------------VGN 183
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
KTDL D+RQV T+EGE KAKE +F+ETSAKAG+N+K +
Sbjct: 184 KTDLVDQRQVPTDEGEAKAKEHGALFMETSAKAGFNIKAL 223
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 89/128 (69%), Positives = 107/128 (83%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+T+ SF TSKWID+V T RG DV
Sbjct: 117 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVTDTQSFLHTSKWIDEVNTARGKDV 176
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+I+LVGNKTDL D+RQV T+EGE KAKE +F+ETSAKAG+N+K LFR +AA+LPGMD+
Sbjct: 177 LIVLVGNKTDLVDQRQVPTDEGEAKAKEHGALFMETSAKAGFNIKALFRTIAASLPGMDA 236
Query: 348 TENKPPED 355
+ ED
Sbjct: 237 VSSAKQED 244
>gi|388496116|gb|AFK36124.1| unknown [Medicago truncatula]
Length = 180
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/222 (54%), Positives = 142/222 (63%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+PL K+KLVFLG++SVGKTS+I TRFMYD FD TYQAT
Sbjct: 5 SPLAKYKLVFLGDRSVGKTSII-----------------------TRFMYDKFDTTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQ WDTAGQERFRSLIPSYIRDS+VAV+VYD+ + SF T+
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQPWDTAGQERFRSLIPSYIRDSSVAVIVYDVAHRQSFLNTN 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KW+++VR ERGSDVII+L V
Sbjct: 102 KWVEEVRQERGSDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL +KRQVS EEG+ K+KE +MFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVEKRQVSIEEGDAKSKEFGIMFIETSAKAGFNIKPL 162
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 85/118 (72%), Positives = 104/118 (88%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQ WDTAGQERFRSLIPSYIRDS+VAV+VYD+ + SF T+KW+++VR ERGSDV
Sbjct: 56 RTVRLQPWDTAGQERFRSLIPSYIRDSSVAVIVYDVAHRQSFLNTNKWVEEVRQERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
II+LVGNKTDL +KRQVS EEG+ K+KE +MFIETSAKAG+N+K LFR++A+ALPGM
Sbjct: 116 IIVLVGNKTDLVEKRQVSIEEGDAKSKEFGIMFIETSAKAGFNIKPLFRKIASALPGM 173
>gi|108706608|gb|ABF94403.1| Ras-related protein Rab-6A, putative, expressed [Oryza sativa
Japonica Group]
Length = 215
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/222 (54%), Positives = 141/222 (63%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ L K+KLVFLG+Q+VGKT++I TRFMYD FD TYQAT
Sbjct: 6 SALAKYKLVFLGDQAVGKTAII-----------------------TRFMYDKFDATYQAT 42
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+T+ SF S
Sbjct: 43 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVTDRQSFLSIS 102
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI++V T+RG DVII+L V
Sbjct: 103 KWIEEVNTQRGGDVIIVL-----------------------------------------V 121
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQ+ST+EGE KA+E MF+ETSAKAG+N+K +
Sbjct: 122 GNKTDLVDKRQISTDEGEAKAQEHGAMFMETSAKAGFNIKPL 163
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 88/128 (68%), Positives = 109/128 (85%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+T+ SF SKWI++V T+RG DV
Sbjct: 57 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVTDRQSFLSISKWIEEVNTQRGGDV 116
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL DKRQ+ST+EGE KA+E MF+ETSAKAG+N+K LFR++AA+LPGM++
Sbjct: 117 IIVLVGNKTDLVDKRQISTDEGEAKAQEHGAMFMETSAKAGFNIKPLFRKIAASLPGMEA 176
Query: 348 TENKPPED 355
+ ED
Sbjct: 177 LSSAKQED 184
>gi|72255617|gb|AAZ66935.1| 117M18_16 [Brassica rapa]
Length = 216
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 126/230 (54%), Positives = 143/230 (62%), Gaps = 73/230 (31%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
PL KFKLVFLG+QSVGKTS+I TRFMYD FD TYQATI
Sbjct: 6 PLAKFKLVFLGDQSVGKTSII-----------------------TRFMYDKFDTTYQATI 42
Query: 70 GIDFLSKTMYLEDRTVRLQL--W-------DTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
GIDFLSKTMYLEDRT+RLQL W DTAGQERFRSLIPSYIRDS+VAV+VYD+ N
Sbjct: 43 GIDFLSKTMYLEDRTLRLQLCLWCLICAFQDTAGQERFRSLIPSYIRDSSVAVIVYDVAN 102
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
SF TSKW++DVRTERG+DVII+L
Sbjct: 103 RQSFLNTSKWVEDVRTERGNDVIIVL---------------------------------- 128
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL DKRQVS EEG+ KA++ V+FIETSAKAG+N+K +
Sbjct: 129 -------VGNKTDLVDKRQVSIEEGDNKARDFGVIFIETSAKAGFNIKPL 171
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/134 (65%), Positives = 109/134 (81%), Gaps = 7/134 (5%)
Query: 229 QVRLQLW-------DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT 281
+++L LW DTAGQERFRSLIPSYIRDS+VAV+VYD+ N SF TSKW++DVRT
Sbjct: 59 RLQLCLWCLICAFQDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSKWVEDVRT 118
Query: 282 ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 341
ERG+DVII+LVGNKTDL DKRQVS EEG+ KA++ V+FIETSAKAG+N+K LFR+++AA
Sbjct: 119 ERGNDVIIVLVGNKTDLVDKRQVSIEEGDNKARDFGVIFIETSAKAGFNIKPLFRKISAA 178
Query: 342 LPGMDSTENKPPED 355
LPGMD+ + D
Sbjct: 179 LPGMDTLSSAKQGD 192
>gi|340376610|ref|XP_003386825.1| PREDICTED: ras-related protein Rab-6.2-like [Amphimedon
queenslandica]
Length = 205
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 117/225 (52%), Positives = 144/225 (64%), Gaps = 65/225 (28%)
Query: 6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTY 65
DF NP+RKFK+VFLGE++VGKTS+I TRFMYD+FD+ Y
Sbjct: 2 DFKNPMRKFKIVFLGEEAVGKTSII-----------------------TRFMYDTFDSNY 38
Query: 66 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 125
QATIGIDFL+KTMYL+DRTVRLQLWDTAGQERF++L+P+YIRDS +A+VVYDITN+ SF
Sbjct: 39 QATIGIDFLAKTMYLDDRTVRLQLWDTAGQERFKALVPAYIRDSAIAIVVYDITNSASFD 98
Query: 126 QTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVII 185
+WI+DVR ERG DV+I
Sbjct: 99 AVDQWIEDVRAERGDDVVI----------------------------------------- 117
Query: 186 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
+L GNK DL D R +STE+GE KAKELNV+F+ETSAK+G N+KQ+
Sbjct: 118 VLTGNKLDLED-RVISTEKGESKAKELNVIFVETSAKSGANIKQL 161
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/118 (66%), Positives = 98/118 (83%), Gaps = 1/118 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERF++L+P+YIRDS +A+VVYDITN+ SF +WI+DVR ERG DV
Sbjct: 56 RTVRLQLWDTAGQERFKALVPAYIRDSAIAIVVYDITNSASFDAVDQWIEDVRAERGDDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
+I+L GNK DL D R +STE+GE KAKELNV+F+ETSAK+G N+KQLF+R ALP M
Sbjct: 116 VIVLTGNKLDLED-RVISTEKGESKAKELNVIFVETSAKSGANIKQLFKRAVLALPSM 172
>gi|209880834|ref|XP_002141856.1| Ras family protein Rab-6A [Cryptosporidium muris RN66]
gi|209557462|gb|EEA07507.1| Ras family protein Rab-6A, putative [Cryptosporidium muris RN66]
Length = 220
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 124/235 (52%), Positives = 144/235 (61%), Gaps = 64/235 (27%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
+ G N L KFK VFLGEQSVGKTS+I TRFMYD+FD
Sbjct: 2 TEGSNRNQLNKFKFVFLGEQSVGKTSII-----------------------TRFMYDTFD 38
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
N YQATIGIDFLSKT+YLEDRT+RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN +
Sbjct: 39 NNYQATIGIDFLSKTLYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRS 98
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
++ T+KWI+DVR ERG DVII L
Sbjct: 99 TYLNTTKWIEDVRNERGKDVIIAL------------------------------------ 122
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDT 237
VGNK DL DKRQV +EGE+ A + +++FIETSAK GYN+K + +L T
Sbjct: 123 -----VGNKADLDDKRQVRYDEGEKLANDNDIIFIETSAKNGYNIKSIFRKLAST 172
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 102/120 (85%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN +++ T+KWI+DVR ERG DV
Sbjct: 59 RTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRSTYLNTTKWIEDVRNERGKDV 118
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II LVGNK DL DKRQV +EGE+ A + +++FIETSAK GYN+K +FR++A+ LP ++S
Sbjct: 119 IIALVGNKADLDDKRQVRYDEGEKLANDNDIIFIETSAKNGYNIKSIFRKLASTLPTLES 178
>gi|5020094|gb|AAD38018.1|AF148210_1 GTPase Rab6 [Rattus norvegicus]
Length = 140
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 108/119 (90%), Positives = 114/119 (95%)
Query: 237 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 296
TAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDVIIMLVGNKT
Sbjct: 1 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 60
Query: 297 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTENKPPED 355
DL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+ST+++ ED
Sbjct: 61 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSRED 119
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/139 (66%), Positives = 95/139 (68%), Gaps = 41/139 (29%)
Query: 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIE 151
TAGQERFRSLIPSYIRDSTVAVVVYDITN NS
Sbjct: 1 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNS---------------------------- 32
Query: 152 TNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE 211
F QT+KWIDDVRTERGSDVIIMLVGNKTDL+DKRQVS EEGERKAKE
Sbjct: 33 -------------FQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKE 79
Query: 212 LNVMFIETSAKAGYNVKQV 230
LNVMFIETSAKAGYNVKQ+
Sbjct: 80 LNVMFIETSAKAGYNVKQL 98
>gi|297798016|ref|XP_002866892.1| hypothetical protein ARALYDRAFT_912477 [Arabidopsis lyrata subsp.
lyrata]
gi|297312728|gb|EFH43151.1| hypothetical protein ARALYDRAFT_912477 [Arabidopsis lyrata subsp.
lyrata]
Length = 214
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 125/223 (56%), Positives = 138/223 (61%), Gaps = 65/223 (29%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+PL KFKLVFLG+QSVGKTS+I TRFMYD FD TYQ T
Sbjct: 5 SPLAKFKLVFLGDQSVGKTSII-----------------------TRFMYDKFDTTYQPT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VA+VVYD++N +F TS
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTS 101
Query: 129 KWIDDVRTERG-SDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
KWIDDV ERG SDVII+L
Sbjct: 102 KWIDDVHRERGQSDVIIVL----------------------------------------- 120
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL +KRQVS EGE K KE VMFIETSAK +N+K +
Sbjct: 121 VGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIKAL 163
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/121 (73%), Positives = 103/121 (85%), Gaps = 1/121 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SD 286
+ VRLQLWDTAGQERFRSLIPSYIRDS+VA+VVYD++N +F TSKWIDDV ERG SD
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIDDVHRERGQSD 115
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
VII+LVGNKTDL +KRQVS EGE K KE VMFIETSAK +N+K LFR++AAALPG+D
Sbjct: 116 VIIVLVGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIKALFRKIAAALPGVD 175
Query: 347 S 347
+
Sbjct: 176 T 176
>gi|349803423|gb|AEQ17184.1| putative rab6a member ras oncogene family [Pipa carvalhoi]
Length = 126
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 114/141 (80%), Positives = 116/141 (82%), Gaps = 23/141 (16%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
NPLRKFKLVFLGEQSVGKTSL ITRFMYDSFDNTYQAT
Sbjct: 1 NPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDNTYQAT 37
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+
Sbjct: 38 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT 97
Query: 129 KWIDDVRTERGSDVIIMLVGS 149
KWIDDVRTERGSDVIIMLVG+
Sbjct: 98 KWIDDVRTERGSDVIIMLVGN 118
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/75 (92%), Positives = 72/75 (96%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 52 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 111
Query: 288 IIMLVGNKTDLSDKR 302
IIMLVGNKTDL+DKR
Sbjct: 112 IIMLVGNKTDLADKR 126
>gi|145349021|ref|XP_001418939.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579169|gb|ABO97232.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 205
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 124/228 (54%), Positives = 142/228 (62%), Gaps = 65/228 (28%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS++ PL K+KLVFLG+QSVGKTS+I +RFMYD
Sbjct: 1 MSATRAGVTPLPKYKLVFLGDQSVGKTSII-----------------------SRFMYDK 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDN+YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+++
Sbjct: 38 FDNSYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVSS 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
SF ++KWI +V+ ERG DVII L
Sbjct: 98 RASFVNSAKWISEVKAERGGDVIIAL---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDL D R+VS EGE KAKE VMFIETSAKAG+NVK
Sbjct: 124 -------VGNKTDL-DGREVSAAEGEAKAKEEGVMFIETSAKAGFNVK 163
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 106/128 (82%), Gaps = 1/128 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+++ SF ++KWI +V+ ERG DV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVSSRASFVNSAKWISEVKAERGGDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II LVGNKTDL D R+VS EGE KAKE VMFIETSAKAG+NVK LFR++AAALPGM++
Sbjct: 120 IIALVGNKTDL-DGREVSAAEGEAKAKEEGVMFIETSAKAGFNVKVLFRKIAAALPGMET 178
Query: 348 TENKPPED 355
K ED
Sbjct: 179 PSTKADED 186
>gi|395732216|ref|XP_003776036.1| PREDICTED: ras-related protein Rab-6C-like [Pongo abelii]
Length = 221
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 116/174 (66%), Positives = 122/174 (70%), Gaps = 41/174 (23%)
Query: 57 MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY 116
MYDSFDNTYQATIGIDFLSKTMYLED T+RL+LWDTAGQER RSLIPSY RDS AV VY
Sbjct: 1 MYDSFDNTYQATIGIDFLSKTMYLEDGTIRLRLWDTAGQERLRSLIPSYSRDSAAAVAVY 60
Query: 117 DITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVR 176
DITN NSF QT+KWIDDVRTERGSDVII L
Sbjct: 61 DITNVNSFQQTTKWIDDVRTERGSDVIITL------------------------------ 90
Query: 177 TERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS E+GERKAKELNVMFIET AKAGYNVKQ+
Sbjct: 91 -----------VGNKTDLADKRQVSIEDGERKAKELNVMFIETRAKAGYNVKQL 133
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 104/126 (82%), Positives = 113/126 (89%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
+RL+LWDTAGQER RSLIPSY RDS AV VYDITN NSF QT+KWIDDVRTERGSDVII
Sbjct: 29 IRLRLWDTAGQERLRSLIPSYSRDSAAAVAVYDITNVNSFQQTTKWIDDVRTERGSDVII 88
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
LVGNKTDL+DKRQVS E+GERKAKELNVMFIET AKAGYNVKQLFRRVAA LPGM+ST+
Sbjct: 89 TLVGNKTDLADKRQVSIEDGERKAKELNVMFIETRAKAGYNVKQLFRRVAAVLPGMESTQ 148
Query: 350 NKPPED 355
++ ED
Sbjct: 149 DRSRED 154
>gi|226507380|ref|NP_001147620.1| LOC100281229 [Zea mays]
gi|195612600|gb|ACG28130.1| ras-related protein Rab-6A [Zea mays]
gi|414865275|tpg|DAA43832.1| TPA: hypothetical protein ZEAMMB73_661349 [Zea mays]
Length = 213
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 121/222 (54%), Positives = 141/222 (63%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ L K+KLVFLG Q+VGKT++I TRFMYD FD+TYQAT
Sbjct: 5 SALAKYKLVFLGNQAVGKTAII-----------------------TRFMYDKFDDTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+T+ SF TS
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVTDRQSFLNTS 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI++V T+RG DV+I L V
Sbjct: 102 KWIEEVNTQRGGDVLIFL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKR+VST+EGE KA+E MF+ETSAKAG+NVK +
Sbjct: 121 GNKTDLVDKRKVSTDEGEAKAQEHGAMFMETSAKAGFNVKPL 162
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 88/128 (68%), Positives = 108/128 (84%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+T+ SF TSKWI++V T+RG DV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVTDRQSFLNTSKWIEEVNTQRGGDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+I LVGNKTDL DKR+VST+EGE KA+E MF+ETSAKAG+NVK LFR++A +LPG+D+
Sbjct: 116 LIFLVGNKTDLVDKRKVSTDEGEAKAQEHGAMFMETSAKAGFNVKPLFRKIAGSLPGLDA 175
Query: 348 TENKPPED 355
+ ED
Sbjct: 176 LSSGKQED 183
>gi|312373514|gb|EFR21237.1| hypothetical protein AND_17346 [Anopheles darlingi]
Length = 194
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 119/163 (73%), Positives = 120/163 (73%), Gaps = 41/163 (25%)
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
N QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN
Sbjct: 31 NIVQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 90
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SFHQTSKWIDDVRTERGSDVIIML
Sbjct: 91 SFHQTSKWIDDVRTERGSDVIIML------------------------------------ 114
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 225
VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG+
Sbjct: 115 -----VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGH 152
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 99/102 (97%), Positives = 101/102 (99%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV
Sbjct: 51 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 110
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 329
IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG+
Sbjct: 111 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGH 152
>gi|340386562|ref|XP_003391777.1| PREDICTED: ras-related protein Rab-6.2-like [Amphimedon
queenslandica]
Length = 205
Score = 223 bits (568), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 116/225 (51%), Positives = 143/225 (63%), Gaps = 65/225 (28%)
Query: 6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTY 65
DF NP+RKFK+VFLGE++VGKTS+I TRFMYD+FD+ Y
Sbjct: 2 DFKNPMRKFKIVFLGEEAVGKTSII-----------------------TRFMYDTFDSNY 38
Query: 66 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 125
QATIGIDFL+KTMYL+DR VRLQLWDTAGQERF++L+P+YIRDS +A+VVYDITN+ SF
Sbjct: 39 QATIGIDFLAKTMYLDDRMVRLQLWDTAGQERFKALVPAYIRDSAIAIVVYDITNSASFD 98
Query: 126 QTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVII 185
+WI+DVR ERG DV+I
Sbjct: 99 AVDQWIEDVRAERGDDVVI----------------------------------------- 117
Query: 186 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
+L GNK DL D R +STE+GE KAKELNV+F+ETSAK+G N+KQ+
Sbjct: 118 VLTGNKLDLED-RVISTEKGESKAKELNVIFVETSAKSGANIKQL 161
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 79/118 (66%), Positives = 98/118 (83%), Gaps = 1/118 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERF++L+P+YIRDS +A+VVYDITN+ SF +WI+DVR ERG DV
Sbjct: 56 RMVRLQLWDTAGQERFKALVPAYIRDSAIAIVVYDITNSASFDAVDQWIEDVRAERGDDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
+I+L GNK DL D R +STE+GE KAKELNV+F+ETSAK+G N+KQLF+R ALP M
Sbjct: 116 VIVLTGNKLDLED-RVISTEKGESKAKELNVIFVETSAKSGANIKQLFKRAVLALPSM 172
>gi|15236081|ref|NP_195699.1| Ras-related protein RABH1C [Arabidopsis thaliana]
gi|75337423|sp|Q9SMR4.1|RAH1C_ARATH RecName: Full=Ras-related protein RABH1c; Short=AtRABH1c
gi|13272477|gb|AAK17177.1|AF325109_1 small GTP-binding protein-like [Arabidopsis thaliana]
gi|14423430|gb|AAK62397.1|AF386952_1 small GTP-binding protein-like [Arabidopsis thaliana]
gi|4490740|emb|CAB38902.1| small GTP-binding protein-like [Arabidopsis thaliana]
gi|7271044|emb|CAB80652.1| small GTP-binding protein-like [Arabidopsis thaliana]
gi|23197670|gb|AAN15362.1| small GTP-binding protein-like [Arabidopsis thaliana]
gi|332661734|gb|AEE87134.1| Ras-related protein RABH1C [Arabidopsis thaliana]
Length = 214
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 123/223 (55%), Positives = 138/223 (61%), Gaps = 65/223 (29%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+PL KFKLVFLG+QSVGKTS+I TRFMYD FD TYQ T
Sbjct: 5 SPLAKFKLVFLGDQSVGKTSII-----------------------TRFMYDKFDTTYQPT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VA+VVYD++N +F TS
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTS 101
Query: 129 KWIDDVRTERG-SDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
KWI+DV ERG S+VII+L
Sbjct: 102 KWIEDVHRERGQSNVIIVL----------------------------------------- 120
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL +KRQVS EGE K KE VMFIETSAK +N+K +
Sbjct: 121 VGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIKAL 163
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 88/121 (72%), Positives = 103/121 (85%), Gaps = 1/121 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SD 286
+ VRLQLWDTAGQERFRSLIPSYIRDS+VA+VVYD++N +F TSKWI+DV ERG S+
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQSN 115
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
VII+LVGNKTDL +KRQVS EGE K KE VMFIETSAK +N+K LFR++AAALPG+D
Sbjct: 116 VIIVLVGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIKALFRKIAAALPGVD 175
Query: 347 S 347
S
Sbjct: 176 S 176
>gi|405123513|gb|AFR98277.1| Rab6 GTPase [Cryptococcus neoformans var. grubii H99]
Length = 210
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 131/245 (53%), Positives = 150/245 (61%), Gaps = 74/245 (30%)
Query: 3 SSGDFGN---PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYD 59
SS DF + PL+KFKLVFLGEQSVGKTSL ITRFMYD
Sbjct: 8 SSADFSSASTPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYD 44
Query: 60 SFDNTYQATIGIDFLSKTMYLEDRTV-RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 118
+FDNTYQATIGIDFLSKTMYLEDRT+ +LQL ERFRSLIPSYIRDS+VAV+VYDI
Sbjct: 45 TFDNTYQATIGIDFLSKTMYLEDRTLGKLQL----SIERFRSLIPSYIRDSSVAVIVYDI 100
Query: 119 TNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTE 178
TN SF TSKW+DDVR ERG DVII+L
Sbjct: 101 TNRTSFQNTSKWVDDVRNERGQDVIIVL-------------------------------- 128
Query: 179 RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV--RLQLWD 236
VGNKTDL+DKRQV+ E+ +++AKEL VM IETSAKAG+NVK + ++ L
Sbjct: 129 ---------VGNKTDLNDKRQVTPEDLDKRAKELGVMSIETSAKAGHNVKTLFKKIALAL 179
Query: 237 TAGQE 241
G E
Sbjct: 180 PGGSE 184
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 78/104 (75%), Positives = 92/104 (88%)
Query: 241 ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 300
ERFRSLIPSYIRDS+VAV+VYDITN SF TSKW+DDVR ERG DVII+LVGNKTDL+D
Sbjct: 78 ERFRSLIPSYIRDSSVAVIVYDITNRTSFQNTSKWVDDVRNERGQDVIIVLVGNKTDLND 137
Query: 301 KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
KRQV+ E+ +++AKEL VM IETSAKAG+NVK LF+++A ALPG
Sbjct: 138 KRQVTPEDLDKRAKELGVMSIETSAKAGHNVKTLFKKIALALPG 181
>gi|6323291|ref|NP_013363.1| Ypt6p [Saccharomyces cerevisiae S288c]
gi|2500077|sp|Q99260.1|YPT6_YEAST RecName: Full=GTP-binding protein YPT6
gi|577182|gb|AAB67381.1| Ylr262cp [Saccharomyces cerevisiae]
gi|927545|emb|CAA42166.1| Ypt6p [Saccharomyces cerevisiae]
gi|45269764|gb|AAS56262.1| YLR262C [Saccharomyces cerevisiae]
gi|151941095|gb|EDN59475.1| conserved protein [Saccharomyces cerevisiae YJM789]
gi|190405321|gb|EDV08588.1| GTP-binding protein YPT6 [Saccharomyces cerevisiae RM11-1a]
gi|207342890|gb|EDZ70519.1| YLR262Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259148244|emb|CAY81491.1| Ypt6p [Saccharomyces cerevisiae EC1118]
gi|285813678|tpg|DAA09574.1| TPA: Ypt6p [Saccharomyces cerevisiae S288c]
gi|392297767|gb|EIW08866.1| Ypt6p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 215
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 127/275 (46%), Positives = 154/275 (56%), Gaps = 76/275 (27%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G L K+K+VFLGEQ VGKTSL ITRFMYD+FD+ YQA
Sbjct: 5 GKSLTKYKIVFLGEQGVGKTSL-----------------------ITRFMYDTFDDHYQA 41
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIGIDFLSKTMYL+D+T+RLQLWDTAGQERFRSLIPSYIRDS VA++VYDIT SF
Sbjct: 42 TIGIDFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSYIRDSRVAIIVYDITKRKSFEYI 101
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
KWI+DV+ ERG + +VI+ +
Sbjct: 102 DKWIEDVKNERGDE----------------------------------------NVILCI 121
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQVRLQLWDTAGQERFRSL 246
VGNK+DLSD+RQ+STEEGE+KAK L +F+ETS KAGYNVK + F+ +
Sbjct: 122 VGNKSDLSDERQISTEEGEKKAKLLGAKIFMETSTKAGYNVKAL------------FKKI 169
Query: 247 IPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT 281
S D NANS +Q + D+ T
Sbjct: 170 AKSLPEFQNSESTPLDSENANSANQNKPGVIDIST 204
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 82/127 (64%), Positives = 103/127 (81%), Gaps = 2/127 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SD 286
K +RLQLWDTAGQERFRSLIPSYIRDS VA++VYDIT SF KWI+DV+ ERG +
Sbjct: 57 KTIRLQLWDTAGQERFRSLIPSYIRDSRVAIIVYDITKRKSFEYIDKWIEDVKNERGDEN 116
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPGM 345
VI+ +VGNK+DLSD+RQ+STEEGE+KAK L +F+ETS KAGYNVK LF+++A +LP
Sbjct: 117 VILCIVGNKSDLSDERQISTEEGEKKAKLLGAKIFMETSTKAGYNVKALFKKIAKSLPEF 176
Query: 346 DSTENKP 352
++E+ P
Sbjct: 177 QNSESTP 183
>gi|255712777|ref|XP_002552671.1| KLTH0C10384p [Lachancea thermotolerans]
gi|238934050|emb|CAR22233.1| KLTH0C10384p [Lachancea thermotolerans CBS 6340]
Length = 234
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/229 (51%), Positives = 142/229 (62%), Gaps = 64/229 (27%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
S+ G L K+K+VFLGEQ VGKTSL ITRFMYD+FD
Sbjct: 23 SANRAGKSLTKYKIVFLGEQGVGKTSL-----------------------ITRFMYDTFD 59
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
+ YQATIGIDFLSKTMYL+D+T+RLQLWDTAGQERFRSLIPSYIRDS VA+VVYD+TN
Sbjct: 60 DHYQATIGIDFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSYIRDSHVAIVVYDVTNKK 119
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF KW++DV++ERG + +
Sbjct: 120 SFEYIDKWVEDVKSERGEE----------------------------------------N 139
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQV 230
V++ +VGNK DLSD+RQVSTEEGERKA+ LN +FIETS K G+NVK +
Sbjct: 140 VVLCIVGNKNDLSDERQVSTEEGERKAQVLNAKIFIETSTKVGFNVKNL 188
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/130 (63%), Positives = 104/130 (80%), Gaps = 2/130 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
K +RLQLWDTAGQERFRSLIPSYIRDS VA+VVYD+TN SF KW++DV++ERG +
Sbjct: 80 KTIRLQLWDTAGQERFRSLIPSYIRDSHVAIVVYDVTNKKSFEYIDKWVEDVKSERGEEN 139
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPGM 345
V++ +VGNK DLSD+RQVSTEEGERKA+ LN +FIETS K G+NVK LFR++A LP
Sbjct: 140 VVLCIVGNKNDLSDERQVSTEEGERKAQVLNAKIFIETSTKVGFNVKNLFRKIAKTLPEF 199
Query: 346 DSTENKPPED 355
+++ P +D
Sbjct: 200 QKSDSVPLDD 209
>gi|156839424|ref|XP_001643403.1| hypothetical protein Kpol_1042p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156114012|gb|EDO15545.1| hypothetical protein Kpol_1042p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 214
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 126/267 (47%), Positives = 157/267 (58%), Gaps = 67/267 (25%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K+K+VFLGEQ VGKTSL ITRFMYD+FD+ YQATIG
Sbjct: 8 LTKYKIVFLGEQGVGKTSL-----------------------ITRFMYDTFDDHYQATIG 44
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKTMYL+D+T+RLQLWDTAGQERFRSLIPSYIRDS VA+VVYDIT SF KW
Sbjct: 45 IDFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSYIRDSRVAIVVYDITKKKSFDCIDKW 104
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
I+DV+ ERG D +VI+ +VGN
Sbjct: 105 IEDVKNERGED----------------------------------------NVILCVVGN 124
Query: 191 KTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP- 248
K+DL+D+RQVSTE+GE+KAKEL +F+ETS KAGYNVK + ++ + + + P
Sbjct: 125 KSDLTDERQVSTEDGEKKAKELGAKIFMETSTKAGYNVKNLFKKIAKSLPEFQNSESTPL 184
Query: 249 --SYIRDSTVAVVVYDITNANSFHQTS 273
+ D+T + DIT + Q+S
Sbjct: 185 DETENSDNTKKTGIIDITTNDELQQSS 211
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 84/127 (66%), Positives = 104/127 (81%), Gaps = 2/127 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
K +RLQLWDTAGQERFRSLIPSYIRDS VA+VVYDIT SF KWI+DV+ ERG D
Sbjct: 57 KTIRLQLWDTAGQERFRSLIPSYIRDSRVAIVVYDITKKKSFDCIDKWIEDVKNERGEDN 116
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPGM 345
VI+ +VGNK+DL+D+RQVSTE+GE+KAKEL +F+ETS KAGYNVK LF+++A +LP
Sbjct: 117 VILCVVGNKSDLTDERQVSTEDGEKKAKELGAKIFMETSTKAGYNVKNLFKKIAKSLPEF 176
Query: 346 DSTENKP 352
++E+ P
Sbjct: 177 QNSESTP 183
>gi|367002862|ref|XP_003686165.1| hypothetical protein TPHA_0F02500 [Tetrapisispora phaffii CBS 4417]
gi|357524465|emb|CCE63731.1| hypothetical protein TPHA_0F02500 [Tetrapisispora phaffii CBS 4417]
Length = 215
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 119/221 (53%), Positives = 140/221 (63%), Gaps = 64/221 (28%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K+K+VFLGEQ VGKTSL ITRFMYD+FD+ YQATIG
Sbjct: 8 LTKYKIVFLGEQGVGKTSL-----------------------ITRFMYDTFDDHYQATIG 44
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKTMYL+D+T+RLQLWDTAGQERFRSLIPSYIRDS VA+VVYDIT SF KW
Sbjct: 45 IDFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSYIRDSRVAIVVYDITKKKSFEYIDKW 104
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
I+DV+TERGS+ +VI+ +VGN
Sbjct: 105 IEDVKTERGSE----------------------------------------NVILCIVGN 124
Query: 191 KTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQV 230
K+DLSD+RQV+TEEGE KAKEL +F+ETS KAG+NVK +
Sbjct: 125 KSDLSDERQVTTEEGEAKAKELGATIFMETSTKAGHNVKNL 165
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 85/130 (65%), Positives = 107/130 (82%), Gaps = 2/130 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
K +RLQLWDTAGQERFRSLIPSYIRDS VA+VVYDIT SF KWI+DV+TERGS+
Sbjct: 57 KTIRLQLWDTAGQERFRSLIPSYIRDSRVAIVVYDITKKKSFEYIDKWIEDVKTERGSEN 116
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPGM 345
VI+ +VGNK+DLSD+RQV+TEEGE KAKEL +F+ETS KAG+NVK LF+++A +LP
Sbjct: 117 VILCIVGNKSDLSDERQVTTEEGEAKAKELGATIFMETSTKAGHNVKNLFKKIAKSLPEF 176
Query: 346 DSTENKPPED 355
++++ P +D
Sbjct: 177 QNSDSTPLDD 186
>gi|410075027|ref|XP_003955096.1| hypothetical protein KAFR_0A05260 [Kazachstania africana CBS 2517]
gi|372461678|emb|CCF55961.1| hypothetical protein KAFR_0A05260 [Kazachstania africana CBS 2517]
Length = 235
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 117/224 (52%), Positives = 137/224 (61%), Gaps = 64/224 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G L K+K+VFLGEQ VGKTSLITRFMYD+FD + YQA
Sbjct: 17 GKSLSKYKIVFLGEQGVGKTSLITRFMYDTFD-----------------------DHYQA 53
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIGIDFLSKTMYL+D+T+RLQLWDTAGQERFRSLIPSYIRDS VA+VVYDIT SF
Sbjct: 54 TIGIDFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSYIRDSKVAIVVYDITKKKSFEFI 113
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
KW+DDV+ ERG + +V++ +
Sbjct: 114 DKWVDDVKNERGEE----------------------------------------NVVLCI 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQV 230
VGNK DL D+RQVSTEEGE KAK+L +F+ETS KAGYNVK +
Sbjct: 134 VGNKNDLGDERQVSTEEGEAKAKKLGAKIFMETSTKAGYNVKNL 177
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 81/118 (68%), Positives = 96/118 (81%), Gaps = 2/118 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
K +RLQLWDTAGQERFRSLIPSYIRDS VA+VVYDIT SF KW+DDV+ ERG +
Sbjct: 69 KTIRLQLWDTAGQERFRSLIPSYIRDSKVAIVVYDITKKKSFEFIDKWVDDVKNERGEEN 128
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALP 343
V++ +VGNK DL D+RQVSTEEGE KAK+L +F+ETS KAGYNVK LF+R+A +LP
Sbjct: 129 VVLCIVGNKNDLGDERQVSTEEGEAKAKKLGAKIFMETSTKAGYNVKNLFKRIAKSLP 186
>gi|50311935|ref|XP_455999.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49645135|emb|CAG98707.1| KLLA0F20471p [Kluyveromyces lactis]
Length = 212
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 118/222 (53%), Positives = 140/222 (63%), Gaps = 64/222 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G LRK+K+VFLGEQ VGKTSL ITRFMYD+FD+ YQA
Sbjct: 6 GKTLRKYKIVFLGEQGVGKTSL-----------------------ITRFMYDTFDDNYQA 42
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIGIDFLSKTMYL+D+T+RLQLWDTAGQERFRSLIPSYIRDS VA+VVYD+TN SF
Sbjct: 43 TIGIDFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSYIRDSHVAIVVYDVTNRKSFEYI 102
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
KWI+DV+ ERG + +VI+++
Sbjct: 103 DKWIEDVKMERGEE----------------------------------------NVILVI 122
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVK 228
VGNK+DL ++RQVSTEEGERK+ LN +FIETS KAG+NVK
Sbjct: 123 VGNKSDLVEERQVSTEEGERKSTVLNAKLFIETSTKAGFNVK 164
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/127 (63%), Positives = 101/127 (79%), Gaps = 2/127 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
K +RLQLWDTAGQERFRSLIPSYIRDS VA+VVYD+TN SF KWI+DV+ ERG +
Sbjct: 58 KTIRLQLWDTAGQERFRSLIPSYIRDSHVAIVVYDVTNRKSFEYIDKWIEDVKMERGEEN 117
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPGM 345
VI+++VGNK+DL ++RQVSTEEGERK+ LN +FIETS KAG+NVK LF+++A LP
Sbjct: 118 VILVIVGNKSDLVEERQVSTEEGERKSTVLNAKLFIETSTKAGFNVKTLFKKIAKLLPEF 177
Query: 346 DSTENKP 352
++ P
Sbjct: 178 QDAQSTP 184
>gi|312283531|dbj|BAJ34631.1| unnamed protein product [Thellungiella halophila]
Length = 213
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 123/223 (55%), Positives = 135/223 (60%), Gaps = 65/223 (29%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ L KFKLVFLG+QSVGKTS+I TRFMYD FD TYQ T
Sbjct: 5 SALAKFKLVFLGDQSVGKTSII-----------------------TRFMYDKFDTTYQPT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VA+VVYD+ N +F S
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDVANRQTFLNIS 101
Query: 129 KWIDDVRTERGS-DVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
KWIDDV ERGS DVII+L
Sbjct: 102 KWIDDVHRERGSGDVIIVL----------------------------------------- 120
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL +KRQVS EGE K KE VMFIETSAK +N+K +
Sbjct: 121 VGNKTDLVEKRQVSISEGEDKGKEHGVMFIETSAKENFNIKAL 163
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/121 (74%), Positives = 101/121 (83%), Gaps = 1/121 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS-D 286
+ VRLQLWDTAGQERFRSLIPSYIRDS+VA+VVYD+ N +F SKWIDDV ERGS D
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDVANRQTFLNISKWIDDVHRERGSGD 115
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
VII+LVGNKTDL +KRQVS EGE K KE VMFIETSAK +N+K LFR++AAALPGMD
Sbjct: 116 VIIVLVGNKTDLVEKRQVSISEGEDKGKEHGVMFIETSAKENFNIKALFRKIAAALPGMD 175
Query: 347 S 347
S
Sbjct: 176 S 176
>gi|349579968|dbj|GAA25129.1| K7_Ypt6p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 215
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 126/275 (45%), Positives = 154/275 (56%), Gaps = 76/275 (27%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G L K+K+VFLGEQ VGKTSL ITRFMYD+FD+ YQA
Sbjct: 5 GKSLTKYKIVFLGEQGVGKTSL-----------------------ITRFMYDTFDDHYQA 41
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIGIDFLSKTMYL+D+T+RLQLWDTAGQERFRSLIPSYIRDS VA++VYDIT SF
Sbjct: 42 TIGIDFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSYIRDSRVAIIVYDITKRKSFEYI 101
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
KWI+DV+ ERG + +VI+ +
Sbjct: 102 DKWIEDVKNERGDE----------------------------------------NVILCI 121
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQVRLQLWDTAGQERFRSL 246
VGNK+DLSD+RQ+STEEGE+KA+ L +F+ETS KAGYNVK + F+ +
Sbjct: 122 VGNKSDLSDERQISTEEGEKKAELLGAKIFMETSTKAGYNVKAL------------FKKI 169
Query: 247 IPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT 281
S D NANS +Q + D+ T
Sbjct: 170 AKSLPEFQNSESTPLDNENANSANQNKPGVIDIST 204
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/127 (63%), Positives = 103/127 (81%), Gaps = 2/127 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SD 286
K +RLQLWDTAGQERFRSLIPSYIRDS VA++VYDIT SF KWI+DV+ ERG +
Sbjct: 57 KTIRLQLWDTAGQERFRSLIPSYIRDSRVAIIVYDITKRKSFEYIDKWIEDVKNERGDEN 116
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPGM 345
VI+ +VGNK+DLSD+RQ+STEEGE+KA+ L +F+ETS KAGYNVK LF+++A +LP
Sbjct: 117 VILCIVGNKSDLSDERQISTEEGEKKAELLGAKIFMETSTKAGYNVKALFKKIAKSLPEF 176
Query: 346 DSTENKP 352
++E+ P
Sbjct: 177 QNSESTP 183
>gi|384493318|gb|EIE83809.1| GTP-binding protein Ryh1 [Rhizopus delemar RA 99-880]
Length = 203
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 121/228 (53%), Positives = 139/228 (60%), Gaps = 69/228 (30%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
S+ DFGNPL+KFKLVFLGEQS K + Y +
Sbjct: 2 SNSDFGNPLKKFKLVFLGEQSGNKQNWKNIAHYKIY------------------------ 37
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
ATIGIDFLSKTMYL+DRT+RLQLWDTAGQERFRSLIPSYIRDS+V VVVYDIT+ +
Sbjct: 38 ----ATIGIDFLSKTMYLDDRTIRLQLWDTAGQERFRSLIPSYIRDSSVCVVVYDITSRS 93
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF TSKWIDDVR ERG+DVII+L
Sbjct: 94 SFLNTSKWIDDVRAERGTDVIIVL------------------------------------ 117
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQV+ EEGE+KAK+ N+MFIETSAKAGYN+K +
Sbjct: 118 -----VGNKTDLNDKRQVTVEEGEKKAKDYNIMFIETSAKAGYNIKAM 160
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 91/120 (75%), Positives = 109/120 (90%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS+V VVVYDIT+ +SF TSKWIDDVR ERG+DV
Sbjct: 54 RTIRLQLWDTAGQERFRSLIPSYIRDSSVCVVVYDITSRSSFLNTSKWIDDVRAERGTDV 113
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKRQV+ EEGE+KAK+ N+MFIETSAKAGYN+K +FR++ ALPGM++
Sbjct: 114 IIVLVGNKTDLNDKRQVTVEEGEKKAKDYNIMFIETSAKAGYNIKAMFRKIGHALPGMEN 173
>gi|256271753|gb|EEU06790.1| Ypt6p [Saccharomyces cerevisiae JAY291]
Length = 215
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 126/275 (45%), Positives = 153/275 (55%), Gaps = 76/275 (27%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G L K+K+VFLGEQ VGKTSL ITRFMYD+FD+ YQA
Sbjct: 5 GKSLTKYKIVFLGEQGVGKTSL-----------------------ITRFMYDTFDDHYQA 41
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIGIDFLSKTMYL+D+T+RLQLWDTAGQERFRSLIPSYIRDS VA++VYDIT SF
Sbjct: 42 TIGIDFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSYIRDSRVAIIVYDITKRKSFEYI 101
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
KWI+DV+ ERG + +VI+ +
Sbjct: 102 DKWIEDVKNERGDE----------------------------------------NVILCI 121
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQVRLQLWDTAGQERFRSL 246
VGNK+DLSD+RQ+STEEGE+KAK L +F+ETS K GYNVK + F+ +
Sbjct: 122 VGNKSDLSDERQISTEEGEKKAKLLGAKIFMETSTKEGYNVKAL------------FKKI 169
Query: 247 IPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT 281
S D NANS +Q + D+ T
Sbjct: 170 AKSLPEFQNSESTPLDSENANSANQNKPGVIDIST 204
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 81/127 (63%), Positives = 102/127 (80%), Gaps = 2/127 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SD 286
K +RLQLWDTAGQERFRSLIPSYIRDS VA++VYDIT SF KWI+DV+ ERG +
Sbjct: 57 KTIRLQLWDTAGQERFRSLIPSYIRDSRVAIIVYDITKRKSFEYIDKWIEDVKNERGDEN 116
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPGM 345
VI+ +VGNK+DLSD+RQ+STEEGE+KAK L +F+ETS K GYNVK LF+++A +LP
Sbjct: 117 VILCIVGNKSDLSDERQISTEEGEKKAKLLGAKIFMETSTKEGYNVKALFKKIAKSLPEF 176
Query: 346 DSTENKP 352
++E+ P
Sbjct: 177 QNSESTP 183
>gi|254579943|ref|XP_002495957.1| ZYRO0C07062p [Zygosaccharomyces rouxii]
gi|238938848|emb|CAR27024.1| ZYRO0C07062p [Zygosaccharomyces rouxii]
Length = 214
Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 121/229 (52%), Positives = 140/229 (61%), Gaps = 64/229 (27%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
SS G L K+K+VFLGEQ VGKTSL ITRFMYD+FD
Sbjct: 2 SSARSGKSLTKYKIVFLGEQGVGKTSL-----------------------ITRFMYDTFD 38
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
+ YQATIGIDFLSKTMYL+D+T+RLQLWDTAGQERFRSLIPSYIRDS VA+VVYDIT
Sbjct: 39 DHYQATIGIDFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSYIRDSRVAIVVYDITKRK 98
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF KWI+DV+ ERG + +
Sbjct: 99 SFEFIDKWIEDVKNERGEE----------------------------------------N 118
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQV 230
VI+ +VGNK+DLSD+RQVSTEEGE KAK L +F+ETS KAGYNVK +
Sbjct: 119 VILCIVGNKSDLSDERQVSTEEGETKAKVLGAKIFMETSTKAGYNVKNL 167
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 85/130 (65%), Positives = 101/130 (77%), Gaps = 2/130 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
K +RLQLWDTAGQERFRSLIPSYIRDS VA+VVYDIT SF KWI+DV+ ERG +
Sbjct: 59 KTIRLQLWDTAGQERFRSLIPSYIRDSRVAIVVYDITKRKSFEFIDKWIEDVKNERGEEN 118
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPGM 345
VI+ +VGNK+DLSD+RQVSTEEGE KAK L +F+ETS KAGYNVK LF+R+A +LP
Sbjct: 119 VILCIVGNKSDLSDERQVSTEEGETKAKVLGAKIFMETSTKAGYNVKNLFKRIAKSLPEF 178
Query: 346 DSTENKPPED 355
+ N +D
Sbjct: 179 QESPNTGVKD 188
>gi|388583972|gb|EIM24273.1| GTP-binding protein ryh1 [Wallemia sebi CBS 633.66]
Length = 208
Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 140/221 (63%), Gaps = 65/221 (29%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
PL+KFKLVFLGEQSVGKTSL ITRFMYD+FD TYQATI
Sbjct: 15 PLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDTFDKTYQATI 51
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
GIDFLSKTMYL+DRT+RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD++N NS+ TSK
Sbjct: 52 GIDFLSKTMYLDDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSNKNSYDNTSK 111
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
WI++V+ ERG DVII+L VG
Sbjct: 112 WIEEVKQERGDDVIIVL-----------------------------------------VG 130
Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DLS+K +V+ ++ + ++FIETSAK+G+NVKQ+
Sbjct: 131 NKVDLSEK-EVNNDQVKEYCDNNGILFIETSAKSGFNVKQL 170
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/123 (63%), Positives = 102/123 (82%), Gaps = 3/123 (2%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
+RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD++N NS+ TSKWI++V+ ERG DVII
Sbjct: 67 IRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSNKNSYDNTSKWIEEVKQERGDDVII 126
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG--MDS 347
+LVGNK DLS+K +V+ ++ + ++FIETSAK+G+NVKQLF+R+A ALP D+
Sbjct: 127 VLVGNKVDLSEK-EVNNDQVKEYCDNNGILFIETSAKSGFNVKQLFKRIALALPASEQDN 185
Query: 348 TEN 350
++N
Sbjct: 186 SQN 188
>gi|401624481|gb|EJS42537.1| ypt6p [Saccharomyces arboricola H-6]
Length = 216
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 118/222 (53%), Positives = 138/222 (62%), Gaps = 64/222 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G L K+K+VFLGEQ VGKTSL ITRFMYD+FD+ YQA
Sbjct: 5 GKSLTKYKIVFLGEQGVGKTSL-----------------------ITRFMYDTFDDHYQA 41
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIGIDFLSKTMYL+D+T+RLQLWDTAGQERFRSLIPSYIRDS VA+VVYDIT SF
Sbjct: 42 TIGIDFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSYIRDSRVAIVVYDITKRKSFEYI 101
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
KWI+DV+ ERG + +VI+ +
Sbjct: 102 DKWIEDVKNERGEE----------------------------------------NVILCI 121
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVK 228
VGNK+DLSD+RQ+STEEGE+KAK L +F+ETS KAGYNVK
Sbjct: 122 VGNKSDLSDERQISTEEGEKKAKLLGAKIFMETSTKAGYNVK 163
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/127 (64%), Positives = 103/127 (81%), Gaps = 2/127 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
K +RLQLWDTAGQERFRSLIPSYIRDS VA+VVYDIT SF KWI+DV+ ERG +
Sbjct: 57 KTIRLQLWDTAGQERFRSLIPSYIRDSRVAIVVYDITKRKSFEYIDKWIEDVKNERGEEN 116
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPGM 345
VI+ +VGNK+DLSD+RQ+STEEGE+KAK L +F+ETS KAGYNVK LF+++A +LP
Sbjct: 117 VILCIVGNKSDLSDERQISTEEGEKKAKLLGAKIFMETSTKAGYNVKTLFKKIAKSLPEF 176
Query: 346 DSTENKP 352
++++ P
Sbjct: 177 QNSDSTP 183
>gi|365759371|gb|EHN01162.1| Ypt6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401842296|gb|EJT44532.1| YPT6-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 216
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/222 (52%), Positives = 138/222 (62%), Gaps = 64/222 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G L K+K+VFLGEQ VGKTSL ITRFMYD+FD+ YQA
Sbjct: 5 GKSLTKYKIVFLGEQGVGKTSL-----------------------ITRFMYDTFDDHYQA 41
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIGIDFLSKTMYL+D+T+RLQLWDTAGQERFRSLIPSYIRDS VA++VYDIT SF
Sbjct: 42 TIGIDFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSYIRDSRVAIIVYDITKRKSFEYI 101
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
KWI+DV+ ERG + +VI+ +
Sbjct: 102 DKWIEDVKNERGEE----------------------------------------NVILCI 121
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVK 228
VGNK+DLSD+RQ+STEEGE+KAK L +F+ETS KAGYNVK
Sbjct: 122 VGNKSDLSDERQISTEEGEKKAKLLGAKIFMETSTKAGYNVK 163
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 83/127 (65%), Positives = 103/127 (81%), Gaps = 2/127 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
K +RLQLWDTAGQERFRSLIPSYIRDS VA++VYDIT SF KWI+DV+ ERG +
Sbjct: 57 KTIRLQLWDTAGQERFRSLIPSYIRDSRVAIIVYDITKRKSFEYIDKWIEDVKNERGEEN 116
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPGM 345
VI+ +VGNK+DLSD+RQ+STEEGE+KAK L +F+ETS KAGYNVK LF+R+A +LP
Sbjct: 117 VILCIVGNKSDLSDERQISTEEGEKKAKLLGAKIFMETSTKAGYNVKTLFKRIAKSLPEF 176
Query: 346 DSTENKP 352
++E+ P
Sbjct: 177 QNSESTP 183
>gi|297742149|emb|CBI33936.3| unnamed protein product [Vitis vinifera]
Length = 179
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/174 (63%), Positives = 123/174 (70%), Gaps = 41/174 (23%)
Query: 57 MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY 116
MYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VY
Sbjct: 1 MYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 60
Query: 117 DITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVR 176
D+ + SF TSKWI++VRTERGSDVII+L
Sbjct: 61 DVASRQSFLNTSKWIEEVRTERGSDVIIVL------------------------------ 90
Query: 177 TERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL +KRQVS EEGE KA+ELNVMFIETSAKAG+N+K +
Sbjct: 91 -----------VGNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKAL 133
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 96/128 (75%), Positives = 113/128 (88%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ + SF TSKWI++VRTERGSDV
Sbjct: 27 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTSKWIEEVRTERGSDV 86
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL +KRQVS EEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 87 IIVLVGNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMET 146
Query: 348 TENKPPED 355
+ ED
Sbjct: 147 LSSAKQED 154
>gi|332247166|ref|XP_003272726.1| PREDICTED: ras-related protein Rab-41 [Nomascus leucogenys]
Length = 221
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 118/220 (53%), Positives = 135/220 (61%), Gaps = 65/220 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K KL+FLGEQS GKTS+ITRFMY+SF QAT+G
Sbjct: 29 LWKSKLLFLGEQS------------------------GKTSVITRFMYNSFGCACQATVG 64
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKTMYLED+ V+LQLWDTAGQERF SLIPSYIRDST+AVVVYDITN NSF +T KW
Sbjct: 65 IDFLSKTMYLEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSFKETDKW 124
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
++ VR ERG DV+IML VGN
Sbjct: 125 VEHVRAERGDDVVIML-----------------------------------------VGN 143
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
K DL +KRQV+ EEGE K++ LNVMFIETSAK GYNVK++
Sbjct: 144 KIDLDNKRQVTAEEGEEKSRNLNVMFIETSAKTGYNVKKL 183
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 91/124 (73%), Positives = 104/124 (83%), Gaps = 3/124 (2%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+LQLWDTAGQERF SLIPSYIRDST+AVVVYDITN NSF +T KW++ VR ERG DV+I
Sbjct: 79 VQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSFKETDKWVEHVRAERGDDVVI 138
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
MLVGNK DL +KRQV+ EEGE K++ LNVMFIETSAK GYNVK+LF+RVA+AL ST
Sbjct: 139 MLVGNKIDLDNKRQVTAEEGEEKSRNLNVMFIETSAKTGYNVKKLFQRVASALL---STR 195
Query: 350 NKPP 353
PP
Sbjct: 196 TSPP 199
>gi|229462781|sp|Q5JT25.2|RAB41_HUMAN RecName: Full=Ras-related protein Rab-41
gi|119625752|gb|EAX05347.1| RAB41, member RAS homolog family [Homo sapiens]
Length = 222
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/220 (52%), Positives = 136/220 (61%), Gaps = 64/220 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K KL+FLGEQSVGKTS+I +RFMY+SF QAT+G
Sbjct: 29 LCKSKLLFLGEQSVGKTSII-----------------------SRFMYNSFGCACQATVG 65
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKTMYLED+ V+LQLWDTAGQERF SLIPSYIRDST+AVVVYDITN NSF +T KW
Sbjct: 66 IDFLSKTMYLEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSFKETDKW 125
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
++ VR ERG DV+IM L+GN
Sbjct: 126 VEHVRAERGDDVVIM-----------------------------------------LLGN 144
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
K DL +KRQV+ E+GE K++ LNVMFIETSAK GYNVK++
Sbjct: 145 KIDLDNKRQVTAEQGEEKSRNLNVMFIETSAKTGYNVKKL 184
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 90/124 (72%), Positives = 104/124 (83%), Gaps = 3/124 (2%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+LQLWDTAGQERF SLIPSYIRDST+AVVVYDITN NSF +T KW++ VR ERG DV+I
Sbjct: 80 VQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSFKETDKWVEHVRAERGDDVVI 139
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
ML+GNK DL +KRQV+ E+GE K++ LNVMFIETSAK GYNVK+LFRRVA+AL ST
Sbjct: 140 MLLGNKIDLDNKRQVTAEQGEEKSRNLNVMFIETSAKTGYNVKKLFRRVASALL---STR 196
Query: 350 NKPP 353
PP
Sbjct: 197 TSPP 200
>gi|297716924|ref|XP_002834740.1| PREDICTED: ras-related protein Rab-41 [Pongo abelii]
Length = 221
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 117/220 (53%), Positives = 135/220 (61%), Gaps = 65/220 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L + KL+FLGEQS GKTS+ITRFMY+SF QAT+G
Sbjct: 29 LCESKLLFLGEQS------------------------GKTSIITRFMYNSFGCACQATVG 64
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKTMYLED+ V+LQLWDTAGQERF SLIPSYIRDST+AVVVYDITN NSF +T KW
Sbjct: 65 IDFLSKTMYLEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSFKETDKW 124
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
++ VR ERG DV+IML VGN
Sbjct: 125 VEHVRAERGDDVVIML-----------------------------------------VGN 143
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
K DL +KRQV+ EEGE K++ LNVMFIETSAK GYNVK++
Sbjct: 144 KIDLDNKRQVTAEEGEEKSRNLNVMFIETSAKTGYNVKKL 183
Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 91/124 (73%), Positives = 103/124 (83%), Gaps = 3/124 (2%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+LQLWDTAGQERF SLIPSYIRDST+AVVVYDITN NSF +T KW++ VR ERG DV+I
Sbjct: 79 VQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSFKETDKWVEHVRAERGDDVVI 138
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
MLVGNK DL +KRQV+ EEGE K++ LNVMFIETSAK GYNVK+LFRRVA+A ST
Sbjct: 139 MLVGNKIDLDNKRQVTAEEGEEKSRNLNVMFIETSAKTGYNVKKLFRRVASAFL---STR 195
Query: 350 NKPP 353
PP
Sbjct: 196 TSPP 199
>gi|297734673|emb|CBI16724.3| unnamed protein product [Vitis vinifera]
Length = 179
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 110/174 (63%), Positives = 123/174 (70%), Gaps = 41/174 (23%)
Query: 57 MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY 116
MYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VY
Sbjct: 1 MYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 60
Query: 117 DITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVR 176
D+ + SF T+KWI++VRTERGSDVII+L
Sbjct: 61 DVASRQSFLNTAKWIEEVRTERGSDVIIVL------------------------------ 90
Query: 177 TERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL DKRQVS EEGE KA++LNVMFIETSAKAG+N+K +
Sbjct: 91 -----------VGNKTDLVDKRQVSIEEGEAKARDLNVMFIETSAKAGFNIKAL 133
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/128 (74%), Positives = 113/128 (88%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ + SF T+KWI++VRTERGSDV
Sbjct: 27 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTAKWIEEVRTERGSDV 86
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL DKRQVS EEGE KA++LNVMFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 87 IIVLVGNKTDLVDKRQVSIEEGEAKARDLNVMFIETSAKAGFNIKALFRKIAAALPGMET 146
Query: 348 TENKPPED 355
+ ED
Sbjct: 147 LSSAKQED 154
>gi|121716549|ref|XP_001275840.1| rab6 [Aspergillus clavatus NRRL 1]
gi|119403997|gb|EAW14414.1| rab6 [Aspergillus clavatus NRRL 1]
Length = 229
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 122/226 (53%), Positives = 135/226 (59%), Gaps = 81/226 (35%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSK---------------------------- 76
TIVGKTSLITRFMYDSFDNTYQATIGIDFLSK
Sbjct: 6 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKVYSILAPIPMTLSGSTPACFCVALHLQP 65
Query: 77 ------------TMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 124
TMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF
Sbjct: 66 VHIELIFGFAHQTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSF 125
Query: 125 HQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVI 184
T KWIDDVR ERG+DVII+L
Sbjct: 126 QNTRKWIDDVRGERGNDVIIVL-------------------------------------- 147
Query: 185 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK G+NVKQ+
Sbjct: 148 ---VGNKTDLNDKREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQL 190
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 93/124 (75%), Positives = 109/124 (87%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DV
Sbjct: 84 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRGERGNDV 143
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK G+NVKQLFRR+A ALPGM+
Sbjct: 144 IIVLVGNKTDLNDKREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQLFRRIAQALPGMEG 203
Query: 348 TENK 351
N+
Sbjct: 204 EANR 207
>gi|281343000|gb|EFB18584.1| hypothetical protein PANDA_013372 [Ailuropoda melanoleuca]
Length = 123
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 113/164 (68%), Positives = 119/164 (72%), Gaps = 41/164 (25%)
Query: 67 ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 126
ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF Q
Sbjct: 1 ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQ 60
Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
TSKWIDDVRTERGSDVIIML
Sbjct: 61 TSKWIDDVRTERGSDVIIML---------------------------------------- 80
Query: 187 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQV
Sbjct: 81 -VGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQV 123
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 94/107 (87%), Positives = 102/107 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 17 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 76
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 334
IIMLVGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQ+
Sbjct: 77 IIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQV 123
>gi|426396293|ref|XP_004064382.1| PREDICTED: ras-related protein Rab-41 [Gorilla gorilla gorilla]
Length = 221
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 116/220 (52%), Positives = 135/220 (61%), Gaps = 65/220 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K KL+FLGEQS GKTS+I+RFMY+SF QAT+G
Sbjct: 29 LCKSKLLFLGEQS------------------------GKTSIISRFMYNSFGCACQATVG 64
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKTMYLED+ V+LQLWDTAGQERF SLIPSYIRDST+AVVVYDITN NSF +T KW
Sbjct: 65 IDFLSKTMYLEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSFKETDKW 124
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
++ VR ERG DV+IM L+GN
Sbjct: 125 VEHVRAERGDDVVIM-----------------------------------------LLGN 143
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
K DL +KRQV+ EEGE K++ LNVMFIETSAK GYNVK++
Sbjct: 144 KIDLDNKRQVTAEEGEEKSRNLNVMFIETSAKTGYNVKKL 183
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 91/124 (73%), Positives = 104/124 (83%), Gaps = 3/124 (2%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+LQLWDTAGQERF SLIPSYIRDST+AVVVYDITN NSF +T KW++ VR ERG DV+I
Sbjct: 79 VQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSFKETDKWVEHVRAERGDDVVI 138
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
ML+GNK DL +KRQV+ EEGE K++ LNVMFIETSAK GYNVK+LFRRVA+AL ST
Sbjct: 139 MLLGNKIDLDNKRQVTAEEGEEKSRNLNVMFIETSAKTGYNVKKLFRRVASALL---STR 195
Query: 350 NKPP 353
PP
Sbjct: 196 TSPP 199
>gi|365990439|ref|XP_003672049.1| hypothetical protein NDAI_0I02380 [Naumovozyma dairenensis CBS 421]
gi|343770823|emb|CCD26806.1| hypothetical protein NDAI_0I02380 [Naumovozyma dairenensis CBS 421]
Length = 222
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/222 (53%), Positives = 136/222 (61%), Gaps = 64/222 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G L K+K+VFLGEQ VGKTSL ITRFMYD+FD+ YQA
Sbjct: 5 GKTLTKYKIVFLGEQGVGKTSL-----------------------ITRFMYDTFDDHYQA 41
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIGIDFLSKTMYL+D+T+RLQLWDTAGQERFRSLIPSYIRDS VA+VVYDIT SF
Sbjct: 42 TIGIDFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSYIRDSRVAIVVYDITKKESFDFI 101
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
KWI+DV+ ERG D +VI+ +
Sbjct: 102 DKWINDVKNERGED----------------------------------------NVILCI 121
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVK 228
VGNK DL+D+RQVS EEGE KAK+L +F+ETS KAGYNVK
Sbjct: 122 VGNKNDLTDQRQVSIEEGENKAKQLGANIFMETSTKAGYNVK 163
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 83/127 (65%), Positives = 100/127 (78%), Gaps = 2/127 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
K +RLQLWDTAGQERFRSLIPSYIRDS VA+VVYDIT SF KWI+DV+ ERG D
Sbjct: 57 KTIRLQLWDTAGQERFRSLIPSYIRDSRVAIVVYDITKKESFDFIDKWINDVKNERGEDN 116
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPGM 345
VI+ +VGNK DL+D+RQVS EEGE KAK+L +F+ETS KAGYNVK LF+R+A +LP
Sbjct: 117 VILCIVGNKNDLTDQRQVSIEEGENKAKQLGANIFMETSTKAGYNVKTLFKRIAKSLPEF 176
Query: 346 DSTENKP 352
++ + P
Sbjct: 177 QNSTSDP 183
>gi|366992854|ref|XP_003676192.1| hypothetical protein NCAS_0D02500 [Naumovozyma castellii CBS 4309]
gi|342302058|emb|CCC69831.1| hypothetical protein NCAS_0D02500 [Naumovozyma castellii CBS 4309]
Length = 222
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/224 (52%), Positives = 137/224 (61%), Gaps = 64/224 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G L K+K+VFLGEQ VGKTSL ITRFMYD+FD+ YQA
Sbjct: 5 GKALTKYKIVFLGEQGVGKTSL-----------------------ITRFMYDTFDDHYQA 41
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIGIDFLSKTMYL+D+T+RLQLWDTAGQERFRSLIPSYIRDS VA+VVYDIT SF
Sbjct: 42 TIGIDFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSYIRDSRVAIVVYDITKKKSFEYI 101
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
KWI+DV+ ERG D +VI+ +
Sbjct: 102 DKWIEDVKNERGDD----------------------------------------NVILCI 121
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQV 230
VGNK+DLSD+RQV+ EEGE KAK L +F+ETS KAGYNVK +
Sbjct: 122 VGNKSDLSDERQVTIEEGENKAKILGADIFMETSTKAGYNVKNL 165
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/127 (64%), Positives = 100/127 (78%), Gaps = 2/127 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
K +RLQLWDTAGQERFRSLIPSYIRDS VA+VVYDIT SF KWI+DV+ ERG D
Sbjct: 57 KTIRLQLWDTAGQERFRSLIPSYIRDSRVAIVVYDITKKKSFEYIDKWIEDVKNERGDDN 116
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPGM 345
VI+ +VGNK+DLSD+RQV+ EEGE KAK L +F+ETS KAGYNVK LF+++A +LP
Sbjct: 117 VILCIVGNKSDLSDERQVTIEEGENKAKILGADIFMETSTKAGYNVKNLFKKIAKSLPEF 176
Query: 346 DSTENKP 352
+++ P
Sbjct: 177 QNSDTNP 183
>gi|355704896|gb|EHH30821.1| Ras-related protein Rab-41, partial [Macaca mulatta]
gi|355757440|gb|EHH60965.1| Ras-related protein Rab-41, partial [Macaca fascicularis]
Length = 222
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 117/220 (53%), Positives = 135/220 (61%), Gaps = 64/220 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K KL+FLGE SVGKTS+I TRFMY+SF QAT+G
Sbjct: 29 LCKSKLLFLGEPSVGKTSVI-----------------------TRFMYNSFGCACQATVG 65
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKTMYLED+ V+LQLWDTAGQERF SLIPSYIRDST+AVVVYDITN +SF +T KW
Sbjct: 66 IDFLSKTMYLEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNISSFKETDKW 125
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
++ VR ERG DV+IML VGN
Sbjct: 126 VEHVRAERGDDVVIML-----------------------------------------VGN 144
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
K DL +KRQV+ EEGE K++ LNVMFIETSAK GYNVK++
Sbjct: 145 KIDLDNKRQVTAEEGEEKSRNLNVMFIETSAKTGYNVKKL 184
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 90/124 (72%), Positives = 103/124 (83%), Gaps = 3/124 (2%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+LQLWDTAGQERF SLIPSYIRDST+AVVVYDITN +SF +T KW++ VR ERG DV+I
Sbjct: 80 VQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNISSFKETDKWVEHVRAERGDDVVI 139
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
MLVGNK DL +KRQV+ EEGE K++ LNVMFIETSAK GYNVK+LFRRV +AL ST
Sbjct: 140 MLVGNKIDLDNKRQVTAEEGEEKSRNLNVMFIETSAKTGYNVKKLFRRVVSALL---STR 196
Query: 350 NKPP 353
PP
Sbjct: 197 TLPP 200
>gi|82596931|ref|XP_726467.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481886|gb|EAA18032.1| Rab6 [Plasmodium yoelii yoelii]
Length = 282
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 115/218 (52%), Positives = 134/218 (61%), Gaps = 64/218 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K+KLVFLGEQ+VGKTS+I TRFMYD+FDN YQ+TIG
Sbjct: 84 LNKYKLVFLGEQAVGKTSII-----------------------TRFMYDTFDNNYQSTIG 120
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKT+YL++ VRLQLWDTAGQERFRSLIPSYIRDS A+VVYDITN SF T+KW
Sbjct: 121 IDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKW 180
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
I D+ ERG DVII+L VGN
Sbjct: 181 IQDILNERGKDVIIVL-----------------------------------------VGN 199
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
KTDL+D R+V+ EEG +KA+E N MF ETSAKAG+N+K
Sbjct: 200 KTDLADLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIK 237
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/121 (68%), Positives = 100/121 (82%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
VRLQLWDTAGQERFRSLIPSYIRDS A+VVYDITN SF T+KWI D+ ERG DVII
Sbjct: 135 VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVII 194
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
+LVGNKTDL+D R+V+ EEG +KA+E N MF ETSAKAG+N+K LF+++AA LP +++
Sbjct: 195 VLVGNKTDLADLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLENNN 254
Query: 350 N 350
N
Sbjct: 255 N 255
>gi|296011025|ref|NP_001027898.2| ras-related protein Rab-41 [Homo sapiens]
gi|109658998|gb|AAI17240.1| RAB41, member RAS oncogene family [Homo sapiens]
gi|313882768|gb|ADR82870.1| Unknown protein [synthetic construct]
Length = 221
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 115/220 (52%), Positives = 135/220 (61%), Gaps = 65/220 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K KL+FLGEQS GKTS+I+RFMY+SF QAT+G
Sbjct: 29 LCKSKLLFLGEQS------------------------GKTSIISRFMYNSFGCACQATVG 64
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKTMYLED+ V+LQLWDTAGQERF SLIPSYIRDST+AVVVYDITN NSF +T KW
Sbjct: 65 IDFLSKTMYLEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSFKETDKW 124
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
++ VR ERG DV+IM L+GN
Sbjct: 125 VEHVRAERGDDVVIM-----------------------------------------LLGN 143
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
K DL +KRQV+ E+GE K++ LNVMFIETSAK GYNVK++
Sbjct: 144 KIDLDNKRQVTAEQGEEKSRNLNVMFIETSAKTGYNVKKL 183
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 90/124 (72%), Positives = 104/124 (83%), Gaps = 3/124 (2%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+LQLWDTAGQERF SLIPSYIRDST+AVVVYDITN NSF +T KW++ VR ERG DV+I
Sbjct: 79 VQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSFKETDKWVEHVRAERGDDVVI 138
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
ML+GNK DL +KRQV+ E+GE K++ LNVMFIETSAK GYNVK+LFRRVA+AL ST
Sbjct: 139 MLLGNKIDLDNKRQVTAEQGEEKSRNLNVMFIETSAKTGYNVKKLFRRVASALL---STR 195
Query: 350 NKPP 353
PP
Sbjct: 196 TSPP 199
>gi|367017001|ref|XP_003682999.1| hypothetical protein TDEL_0G04210 [Torulaspora delbrueckii]
gi|359750662|emb|CCE93788.1| hypothetical protein TDEL_0G04210 [Torulaspora delbrueckii]
Length = 222
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 117/224 (52%), Positives = 138/224 (61%), Gaps = 64/224 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G L K+K+VFLGEQ VGKTSL ITRFMYD+FD+ YQA
Sbjct: 7 GKSLTKYKIVFLGEQGVGKTSL-----------------------ITRFMYDTFDDHYQA 43
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIGIDFLSKTMYL+D+T+RLQLWDTAGQERFRSLIPSYIRDS VA+VVYDIT SF
Sbjct: 44 TIGIDFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSYIRDSRVAIVVYDITKKKSFEFI 103
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
KWI+DV+ ERG + +VI+ +
Sbjct: 104 DKWIEDVKNERGEE----------------------------------------NVILCI 123
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQV 230
VGNK+DL+D+RQVSTEEGE KAK L +F+ETS KAG+NVK +
Sbjct: 124 VGNKSDLADERQVSTEEGEAKAKLLGAKIFMETSTKAGHNVKNL 167
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/118 (67%), Positives = 97/118 (82%), Gaps = 2/118 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
K +RLQLWDTAGQERFRSLIPSYIRDS VA+VVYDIT SF KWI+DV+ ERG +
Sbjct: 59 KTIRLQLWDTAGQERFRSLIPSYIRDSRVAIVVYDITKKKSFEFIDKWIEDVKNERGEEN 118
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALP 343
VI+ +VGNK+DL+D+RQVSTEEGE KAK L +F+ETS KAG+NVK LF+++A +LP
Sbjct: 119 VILCIVGNKSDLADERQVSTEEGEAKAKLLGAKIFMETSTKAGHNVKNLFKKIAKSLP 176
>gi|6759651|gb|AAF27978.1|AF093826_1 GTP binding protein [Plasmodium berghei]
gi|6759653|gb|AAF27979.1|AF093827_1 GTP binding protein [Plasmodium berghei]
Length = 207
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 115/218 (52%), Positives = 134/218 (61%), Gaps = 64/218 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K+KLVFLGEQ+VGKTS+I TRFMYD+FDN YQ+TIG
Sbjct: 9 LNKYKLVFLGEQAVGKTSII-----------------------TRFMYDTFDNNYQSTIG 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKT+YL++ VRLQLWDTAGQERFRSLIPSYIRDS A+VVYDITN SF T+KW
Sbjct: 46 IDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKW 105
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
I D+ ERG DVII+L VGN
Sbjct: 106 IQDILNERGKDVIIVL-----------------------------------------VGN 124
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
KTDL+D R+V+ EEG +KA+E N MF ETSAKAG+N+K
Sbjct: 125 KTDLADLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIK 162
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 83/121 (68%), Positives = 100/121 (82%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
VRLQLWDTAGQERFRSLIPSYIRDS A+VVYDITN SF T+KWI D+ ERG DVII
Sbjct: 60 VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVII 119
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
+LVGNKTDL+D R+V+ EEG +KA+E N MF ETSAKAG+N+K LF+++AA LP +++
Sbjct: 120 VLVGNKTDLADLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLENNN 179
Query: 350 N 350
N
Sbjct: 180 N 180
>gi|397498900|ref|XP_003820211.1| PREDICTED: LOW QUALITY PROTEIN: ras-related protein Rab-41 [Pan
paniscus]
Length = 222
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 115/220 (52%), Positives = 135/220 (61%), Gaps = 64/220 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K KL+FLGEQSVGKTS+I +RFMY+SF QAT+G
Sbjct: 29 LCKSKLLFLGEQSVGKTSII-----------------------SRFMYNSFGCACQATVG 65
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKTMYLED+ V+LQLWDTAGQERF SLIPSYIRDST+AVVVYDITN NSF +T KW
Sbjct: 66 IDFLSKTMYLEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSFKETDKW 125
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
++ V ERG DV+IM L+GN
Sbjct: 126 VEHVXAERGDDVVIM-----------------------------------------LLGN 144
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
K DL +KRQV+ E+GE K++ LNVMFIETSAK GYNVK++
Sbjct: 145 KIDLDNKRQVTAEQGEEKSRNLNVMFIETSAKTGYNVKKL 184
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 89/124 (71%), Positives = 103/124 (83%), Gaps = 3/124 (2%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+LQLWDTAGQERF SLIPSYIRDST+AVVVYDITN NSF +T KW++ V ERG DV+I
Sbjct: 80 VQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSFKETDKWVEHVXAERGDDVVI 139
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
ML+GNK DL +KRQV+ E+GE K++ LNVMFIETSAK GYNVK+LFRRVA+AL ST
Sbjct: 140 MLLGNKIDLDNKRQVTAEQGEEKSRNLNVMFIETSAKTGYNVKKLFRRVASALL---STR 196
Query: 350 NKPP 353
PP
Sbjct: 197 TSPP 200
>gi|402910441|ref|XP_003917886.1| PREDICTED: ras-related protein Rab-41 [Papio anubis]
Length = 223
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/220 (52%), Positives = 134/220 (60%), Gaps = 65/220 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K KL+FLGE S GKTS+ITRFMY+SF QAT+G
Sbjct: 29 LCKSKLLFLGEPS------------------------GKTSVITRFMYNSFGCACQATVG 64
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKTMYLED+ V+LQLWDTAGQERF SLIPSYIRDST+AVVVYDITN +SF +T KW
Sbjct: 65 IDFLSKTMYLEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNISSFKETDKW 124
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
++ VR ERG DV+IML VGN
Sbjct: 125 VEHVRAERGDDVVIML-----------------------------------------VGN 143
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
K DL +KRQV+ EEGE K++ LNVMFIETSAK GYNVK++
Sbjct: 144 KIDLDNKRQVTAEEGEEKSRNLNVMFIETSAKTGYNVKKL 183
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/124 (71%), Positives = 102/124 (82%), Gaps = 3/124 (2%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+LQLWDTAGQERF SLIPSYIRDST+AVVVYDITN +SF +T KW++ VR ERG DV+I
Sbjct: 79 VQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNISSFKETDKWVEHVRAERGDDVVI 138
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
MLVGNK DL +KRQV+ EEGE K++ LNVMFIETSAK GYNVK+LFR V +AL ST
Sbjct: 139 MLVGNKIDLDNKRQVTAEEGEEKSRNLNVMFIETSAKTGYNVKKLFRHVVSALL---STR 195
Query: 350 NKPP 353
PP
Sbjct: 196 TLPP 199
>gi|389583987|dbj|GAB66721.1| small GTPase Rab6 [Plasmodium cynomolgi strain B]
Length = 207
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 115/218 (52%), Positives = 132/218 (60%), Gaps = 64/218 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K+KLVFLGEQ+VGKTS+I TRFMYD+FDN YQ+TIG
Sbjct: 9 LNKYKLVFLGEQAVGKTSII-----------------------TRFMYDTFDNNYQSTIG 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKT+YL++ VRLQLWDTAGQERFRSLIPSYIRDS A+VVYDITN SF T+KW
Sbjct: 46 IDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKW 105
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
I D+ ERG DVII L VGN
Sbjct: 106 IQDILNERGKDVIIAL-----------------------------------------VGN 124
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
KTDL D R+V+ EEG +KA+E N MF ETSAKAG+N+K
Sbjct: 125 KTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIK 162
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/119 (69%), Positives = 98/119 (82%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
VRLQLWDTAGQERFRSLIPSYIRDS A+VVYDITN SF T+KWI D+ ERG DVII
Sbjct: 60 VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVII 119
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDST 348
LVGNKTDL D R+V+ EEG +KA+E N MF ETSAKAG+N+K LF+++AA LP +D++
Sbjct: 120 ALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 178
>gi|303313355|ref|XP_003066689.1| Ras-related protein Rab-6A , putative [Coccidioides posadasii C735
delta SOWgp]
gi|240106351|gb|EER24544.1| Ras-related protein Rab-6A , putative [Coccidioides posadasii C735
delta SOWgp]
Length = 180
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/174 (63%), Positives = 123/174 (70%), Gaps = 41/174 (23%)
Query: 57 MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY 116
MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVY
Sbjct: 1 MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 60
Query: 117 DITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVR 176
DI+NA SF T KW+DDVR ERG+DVII+L
Sbjct: 61 DISNAKSFQNTRKWVDDVRGERGNDVIIVL------------------------------ 90
Query: 177 TERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK GYNVKQ+
Sbjct: 91 -----------VGNKTDLNDKREVTTAQGEEEAKKNGLMFIETSAKVGYNVKQL 133
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 92/120 (76%), Positives = 107/120 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KW+DDVR ERG+DV
Sbjct: 27 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWVDDVRGERGNDV 86
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK GYNVKQLFRR+A ALPGM+
Sbjct: 87 IIVLVGNKTDLNDKREVTTAQGEEEAKKNGLMFIETSAKVGYNVKQLFRRIAQALPGMEG 146
>gi|1628428|emb|CAA63555.1| GTPase [Plasmodium falciparum 3D7]
Length = 207
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 115/218 (52%), Positives = 132/218 (60%), Gaps = 64/218 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K+KLVFLGEQ+VGKTS+I TRFMYD+FDN YQ+TIG
Sbjct: 9 LNKYKLVFLGEQAVGKTSII-----------------------TRFMYDTFDNNYQSTIG 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKT+YL++ VRLQLWDTAGQERFRSLIPSYIRDS A+VVYDITN SF T+KW
Sbjct: 46 IDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKW 105
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
I D+ ERG DVII L VGN
Sbjct: 106 IQDILNERGKDVIIAL-----------------------------------------VGN 124
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
KTDL D R+V+ EEG +KA+E N MF ETSAKAG+N+K
Sbjct: 125 KTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIK 162
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 98/121 (80%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
VRLQLWDTAGQERFRSLIPSYIRDS A+VVYDITN SF T+KWI D+ ERG DVII
Sbjct: 60 VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVII 119
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
LVGNKTDL D R+V+ EEG +KA+E N MF ETSAKAG+N+K LF++ A+ LP +D+T
Sbjct: 120 ALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKTASKLPNLDNTN 179
Query: 350 N 350
N
Sbjct: 180 N 180
>gi|449666816|ref|XP_002162274.2| PREDICTED: ras-related protein Rab-6A-like [Hydra magnipapillata]
Length = 174
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 107/174 (61%), Positives = 122/174 (70%), Gaps = 41/174 (23%)
Query: 57 MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY 116
MYDSFD+TYQATIGIDFLSKTMYLEDRTVRLQ+WDTAGQERFRSLIPSYIRDS+ A+VVY
Sbjct: 1 MYDSFDSTYQATIGIDFLSKTMYLEDRTVRLQIWDTAGQERFRSLIPSYIRDSSAAIVVY 60
Query: 117 DITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVR 176
DITN NSF Q KWI+DVR ERG DV+IML
Sbjct: 61 DITNTNSFAQVDKWIEDVRAERGDDVVIML------------------------------ 90
Query: 177 TERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR++S E+GE+KAKEL V+FIE+SAK +NVKQ+
Sbjct: 91 -----------VGNKTDLTDKRRISMEQGEKKAKELGVIFIESSAKTAHNVKQL 133
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 112/128 (87%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQ+WDTAGQERFRSLIPSYIRDS+ A+VVYDITN NSF Q KWI+DVR ERG DV
Sbjct: 27 RTVRLQIWDTAGQERFRSLIPSYIRDSSAAIVVYDITNTNSFAQVDKWIEDVRAERGDDV 86
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+IMLVGNKTDL+DKR++S E+GE+KAKEL V+FIE+SAK +NVKQLFRR++A+LPG+D
Sbjct: 87 VIMLVGNKTDLTDKRRISMEQGEKKAKELGVIFIESSAKTAHNVKQLFRRISASLPGIDD 146
Query: 348 TENKPPED 355
E+ P++
Sbjct: 147 KEDDKPKE 154
>gi|444320471|ref|XP_004180892.1| hypothetical protein TBLA_0E03190 [Tetrapisispora blattae CBS 6284]
gi|387513935|emb|CCH61373.1| hypothetical protein TBLA_0E03190 [Tetrapisispora blattae CBS 6284]
Length = 207
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 133/221 (60%), Gaps = 64/221 (28%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K+K+VFLGEQ VGKTSL ITRFMYD+FD YQATIG
Sbjct: 6 LTKYKIVFLGEQGVGKTSL-----------------------ITRFMYDTFDEHYQATIG 42
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKTMYL+D+T+RLQLWDTAGQERFRSLIPSYIRDS VA+VVYDIT SF KW
Sbjct: 43 IDFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSYIRDSRVAIVVYDITKKKSFEYIDKW 102
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
I DV+ ERG D +I+ + VGN
Sbjct: 103 IQDVKNERGDDGVILCI----------------------------------------VGN 122
Query: 191 KTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQV 230
K+DLSD+RQVS EEGE KAK L +F+ETS KAGYNVK +
Sbjct: 123 KSDLSDQRQVSNEEGENKAKLLGADIFMETSTKAGYNVKNL 163
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/130 (66%), Positives = 102/130 (78%), Gaps = 2/130 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
K +RLQLWDTAGQERFRSLIPSYIRDS VA+VVYDIT SF KWI DV+ ERG D
Sbjct: 55 KTIRLQLWDTAGQERFRSLIPSYIRDSRVAIVVYDITKKKSFEYIDKWIQDVKNERGDDG 114
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPGM 345
VI+ +VGNK+DLSD+RQVS EEGE KAK L +F+ETS KAGYNVK LF+++A +LP
Sbjct: 115 VILCIVGNKSDLSDQRQVSNEEGENKAKLLGADIFMETSTKAGYNVKNLFKKIAKSLPEF 174
Query: 346 DSTENKPPED 355
++TE P E+
Sbjct: 175 ENTEGNPLEN 184
>gi|320586660|gb|EFW99330.1| Ras small monomeric GTPase [Grosmannia clavigera kw1407]
Length = 174
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 108/174 (62%), Positives = 122/174 (70%), Gaps = 41/174 (23%)
Query: 57 MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY 116
MYDSFDN YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVY
Sbjct: 1 MYDSFDNMYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 60
Query: 117 DITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVR 176
DI+NA SF T KWIDDVR ERG+DVII+L
Sbjct: 61 DISNAKSFQNTRKWIDDVRAERGNDVIIVL------------------------------ 90
Query: 177 TERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR+V+T++GE +AK N+MF+ETSAK G+NVK +
Sbjct: 91 -----------VGNKTDLNDKREVTTQQGEEEAKRNNLMFVETSAKVGHNVKPL 133
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 91/122 (74%), Positives = 109/122 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DV
Sbjct: 27 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRAERGNDV 86
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKR+V+T++GE +AK N+MF+ETSAK G+NVK LF+R+A ALPGM+
Sbjct: 87 IIVLVGNKTDLNDKREVTTQQGEEEAKRNNLMFVETSAKVGHNVKPLFKRIAQALPGMEG 146
Query: 348 TE 349
T+
Sbjct: 147 TD 148
>gi|258597414|ref|XP_001348128.2| PfRab6, GTPase [Plasmodium falciparum 3D7]
gi|254832720|gb|AAN36041.2| PfRab6, GTPase [Plasmodium falciparum 3D7]
Length = 207
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 115/218 (52%), Positives = 132/218 (60%), Gaps = 64/218 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K+KLVFLGEQ+VGKTS+I TRFMYD+FDN YQ+TIG
Sbjct: 9 LNKYKLVFLGEQAVGKTSII-----------------------TRFMYDTFDNNYQSTIG 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKT+YL++ VRLQLWDTAGQERFRSLIPSYIRDS A+VVYDITN SF T+KW
Sbjct: 46 IDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKW 105
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
I D+ ERG DVII L VGN
Sbjct: 106 IQDILNERGKDVIIAL-----------------------------------------VGN 124
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
KTDL D R+V+ EEG +KA+E N MF ETSAKAG+N+K
Sbjct: 125 KTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIK 162
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 99/121 (81%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
VRLQLWDTAGQERFRSLIPSYIRDS A+VVYDITN SF T+KWI D+ ERG DVII
Sbjct: 60 VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVII 119
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
LVGNKTDL D R+V+ EEG +KA+E N MF ETSAKAG+N+K LF+++A+ LP +D+T
Sbjct: 120 ALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIASKLPNLDNTN 179
Query: 350 N 350
N
Sbjct: 180 N 180
>gi|1575675|gb|AAC47440.1| rab6 [Plasmodium falciparum]
Length = 240
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 115/218 (52%), Positives = 132/218 (60%), Gaps = 64/218 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K+KLVFLGEQ+VGKTS+ITRFMYD+FD N YQ+TIG
Sbjct: 42 LNKYKLVFLGEQAVGKTSIITRFMYDTFD-----------------------NNYQSTIG 78
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKT+YL++ VRLQLWDTAGQERFRSLIPSYIRDS A+VVYDITN SF T+KW
Sbjct: 79 IDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKW 138
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
I D+ ERG DVII L VGN
Sbjct: 139 IQDILNERGKDVIIAL-----------------------------------------VGN 157
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
KTDL D R+V+ EEG +KA+E N MF ETSAKAG+N+K
Sbjct: 158 KTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIK 195
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 99/121 (81%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
VRLQLWDTAGQERFRSLIPSYIRDS A+VVYDITN SF T+KWI D+ ERG DVII
Sbjct: 93 VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVII 152
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
LVGNKTDL D R+V+ EEG +KA+E N MF ETSAKAG+N+K LF+++A+ LP +D+T
Sbjct: 153 ALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIASKLPNLDNTN 212
Query: 350 N 350
N
Sbjct: 213 N 213
>gi|403216033|emb|CCK70531.1| hypothetical protein KNAG_0E02720 [Kazachstania naganishii CBS
8797]
Length = 231
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 116/230 (50%), Positives = 138/230 (60%), Gaps = 64/230 (27%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
+ +G G L K+K+VFLGEQ VGKTSL ITRFMYD+F
Sbjct: 5 NGAGRSGKALSKYKIVFLGEQGVGKTSL-----------------------ITRFMYDTF 41
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
D+ YQATIGIDFLSKTMYL+D T+R QLWDTAGQERFRSLIPSYIRDS VA+VVYDIT
Sbjct: 42 DDHYQATIGIDFLSKTMYLDDHTIRFQLWDTAGQERFRSLIPSYIRDSRVAIVVYDITKK 101
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF KW++DV+ ER +D
Sbjct: 102 KSFEYIDKWVEDVKNERSAD---------------------------------------- 121
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQV 230
+VI +VGNK+DL+D+RQVSTEEGE+K K L +F+ETS KAGYNVK +
Sbjct: 122 NVIFCIVGNKSDLTDERQVSTEEGEQKTKVLGAQIFMETSTKAGYNVKNL 171
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/122 (63%), Positives = 96/122 (78%), Gaps = 2/122 (1%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD-VI 288
+R QLWDTAGQERFRSLIPSYIRDS VA+VVYDIT SF KW++DV+ ER +D VI
Sbjct: 65 IRFQLWDTAGQERFRSLIPSYIRDSRVAIVVYDITKKKSFEYIDKWVEDVKNERSADNVI 124
Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+VGNK+DL+D+RQVSTEEGE+K K L +F+ETS KAGYNVK LF+++A +LP
Sbjct: 125 FCIVGNKSDLTDERQVSTEEGEQKTKVLGAQIFMETSTKAGYNVKNLFKKIAKSLPEFQD 184
Query: 348 TE 349
T+
Sbjct: 185 TD 186
>gi|363750482|ref|XP_003645458.1| hypothetical protein Ecym_3137 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889092|gb|AET38641.1| Hypothetical protein Ecym_3137 [Eremothecium cymbalariae
DBVPG#7215]
Length = 221
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 116/229 (50%), Positives = 140/229 (61%), Gaps = 64/229 (27%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
SS G L K+K+VFLGEQ VGKTSL ITRFMYD+FD
Sbjct: 2 SSSRTGKALSKYKIVFLGEQGVGKTSL-----------------------ITRFMYDTFD 38
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
+ YQATIGIDFLSKT+YL+DR +RLQLWDTAGQERFRSLIPSYIRDS VA+VVYD+TN
Sbjct: 39 DHYQATIGIDFLSKTVYLDDRNIRLQLWDTAGQERFRSLIPSYIRDSHVAIVVYDVTNKR 98
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF KW++DV+TERG + +
Sbjct: 99 SFEYIDKWVEDVKTERGEE----------------------------------------N 118
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQV 230
+I+ +VGNK DL D+R VST+EGE KA+ LN +F+ETS KAG+NVKQ+
Sbjct: 119 LILCIVGNKNDLVDERSVSTKEGEMKAQLLNAKIFMETSTKAGFNVKQL 167
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/124 (62%), Positives = 99/124 (79%), Gaps = 2/124 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
+ +RLQLWDTAGQERFRSLIPSYIRDS VA+VVYD+TN SF KW++DV+TERG +
Sbjct: 59 RNIRLQLWDTAGQERFRSLIPSYIRDSHVAIVVYDVTNKRSFEYIDKWVEDVKTERGEEN 118
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPGM 345
+I+ +VGNK DL D+R VST+EGE KA+ LN +F+ETS KAG+NVKQLF+ +A LP
Sbjct: 119 LILCIVGNKNDLVDERSVSTKEGEMKAQLLNAKIFMETSTKAGFNVKQLFKSIAKLLPEF 178
Query: 346 DSTE 349
+T+
Sbjct: 179 QNTK 182
>gi|356540581|ref|XP_003538766.1| PREDICTED: LOW QUALITY PROTEIN: ras-related protein RABH1b-like
[Glycine max]
Length = 208
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 113/187 (60%), Positives = 130/187 (69%), Gaps = 43/187 (22%)
Query: 46 IVGKTSLITRFMYDSFDNTYQATIGIDF-LSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
I GKTS+ITRFMYD FDNTYQATIGIDF LSKT+Y+EDRTVRLQLWDTAGQERFRSLIPS
Sbjct: 19 ICGKTSIITRFMYDKFDNTYQATIGIDFFLSKTLYVEDRTVRLQLWDTAGQERFRSLIPS 78
Query: 105 YIRDSTVA-VVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHAN 163
YIRDS+VA V+ YD+ + QT
Sbjct: 79 YIRDSSVAYVIAYDVAS----RQT------------------------------------ 98
Query: 164 SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA 223
F TS+WI++VR ERGSD II+ VGNKTDL +KRQVSTEEGE K++ELNVMFIE SAKA
Sbjct: 99 -FLNTSRWIEEVRIERGSDAIIVHVGNKTDLVNKRQVSTEEGEAKSRELNVMFIEASAKA 157
Query: 224 GYNVKQV 230
G+N+K +
Sbjct: 158 GFNIKAL 164
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/129 (68%), Positives = 109/129 (84%), Gaps = 1/129 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVA-VVVYDITNANSFHQTSKWIDDVRTERGSD 286
+ VRLQLWDTAGQERFRSLIPSYIRDS+VA V+ YD+ + +F TS+WI++VR ERGSD
Sbjct: 57 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAYVIAYDVASRQTFLNTSRWIEEVRIERGSD 116
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II+ VGNKTDL +KRQVSTEEGE K++ELNVMFIE SAKAG+N+K LFR++AAALPGM+
Sbjct: 117 AIIVHVGNKTDLVNKRQVSTEEGEAKSRELNVMFIEASAKAGFNIKALFRKIAAALPGME 176
Query: 347 STENKPPED 355
+ + ED
Sbjct: 177 TLSSTKQED 185
>gi|390479890|ref|XP_002763014.2| PREDICTED: ras-related protein Rab-41 [Callithrix jacchus]
Length = 224
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 118/237 (49%), Positives = 140/237 (59%), Gaps = 75/237 (31%)
Query: 4 SGDFG----------NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLI 53
+GDFG +P K KLVFLG+ S+GKTS+I
Sbjct: 13 AGDFGLKAAEGPEYQSPC-KAKLVFLGDPSLGKTSII----------------------- 48
Query: 54 TRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 113
TRFMYDSF T+QAT+GIDFLSK MYLEDR V+LQLWDTAGQERF SLIPSYIR ST+AV
Sbjct: 49 TRFMYDSFGCTFQATVGIDFLSKNMYLEDRIVQLQLWDTAGQERFHSLIPSYIRGSTIAV 108
Query: 114 VVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID 173
VVYD+TN NSF +T KW++ VR ERG DV+IML
Sbjct: 109 VVYDVTNINSFKETDKWVERVRAERGDDVVIML--------------------------- 141
Query: 174 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNK DL+++RQV+ EEGE K++ LNVMFIETSAK YNV ++
Sbjct: 142 --------------VGNKIDLNNERQVTAEEGEEKSRNLNVMFIETSAKTSYNVDKL 184
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 87/124 (70%), Positives = 102/124 (82%), Gaps = 3/124 (2%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+LQLWDTAGQERF SLIPSYIR ST+AVVVYD+TN NSF +T KW++ VR ERG DV+I
Sbjct: 80 VQLQLWDTAGQERFHSLIPSYIRGSTIAVVVYDVTNINSFKETDKWVERVRAERGDDVVI 139
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
MLVGNK DL+++RQV+ EEGE K++ LNVMFIETSAK YNV +LFR VA+ALP ST
Sbjct: 140 MLVGNKIDLNNERQVTAEEGEEKSRNLNVMFIETSAKTSYNVDKLFRCVASALP---STS 196
Query: 350 NKPP 353
PP
Sbjct: 197 TSPP 200
>gi|323446136|gb|EGB02421.1| hypothetical protein AURANDRAFT_35265 [Aureococcus anophagefferens]
Length = 213
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 119/221 (53%), Positives = 136/221 (61%), Gaps = 64/221 (28%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
PL K+KLVFLG+Q VGKT +I RF+YDSFD YQATI
Sbjct: 14 PLAKYKLVFLGDQGVGKTCIIN-----------------------RFVYDSFDKNYQATI 50
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD T SF +SK
Sbjct: 51 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDTTARASFLDSSK 110
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
WI DVR ER G DV+++LVG
Sbjct: 111 WIADVRAER-----------------------------------------GDDVVVVLVG 129
Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NKTDL+D+RQVS EEGE KA+ ++F+ETSAKAG NVK++
Sbjct: 130 NKTDLADRRQVSVEEGEAKARAERILFVETSAKAGVNVKRL 170
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 94/111 (84%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD T SF +SKWI DVR ERG DV
Sbjct: 64 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDTTARASFLDSSKWIADVRAERGDDV 123
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
+++LVGNKTDL+D+RQVS EEGE KA+ ++F+ETSAKAG NVK+LFR V
Sbjct: 124 VVVLVGNKTDLADRRQVSVEEGEAKARAERILFVETSAKAGVNVKRLFRDV 174
>gi|345315420|ref|XP_001505766.2| PREDICTED: ras-related protein Rab-6B-like, partial
[Ornithorhynchus anatinus]
Length = 205
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/178 (63%), Positives = 122/178 (68%), Gaps = 44/178 (24%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR
Sbjct: 1 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 60
Query: 108 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ 167
DSTVAVVVYDITN NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 61 DSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIML--------------------- 99
Query: 168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE---EGERKAKELNVMFIETSAK 222
VGNKTDL+DKR++S + +G+RK ++ + AK
Sbjct: 100 --------------------VGNKTDLADKRKISMKRAGDGDRKRGQVQRRVFKELAK 137
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/117 (67%), Positives = 90/117 (76%), Gaps = 5/117 (4%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 36 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 95
Query: 288 IIMLVGNKTDLSDKRQVSTE---EGERKAKELNVMFIETSAK--AGYNVKQLFRRVA 339
IIMLVGNKTDL+DKR++S + +G+RK ++ + AK G N + V
Sbjct: 96 IIMLVGNKTDLADKRKISMKRAGDGDRKRGQVQRRVFKELAKERMGSNARNCCGEVG 152
>gi|410056591|ref|XP_003954065.1| PREDICTED: LOW QUALITY PROTEIN: ras-related protein Rab-41 [Pan
troglodytes]
Length = 221
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/220 (51%), Positives = 133/220 (60%), Gaps = 65/220 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K KL+FLGEQS GKTS+I+RFMY+SF QAT+G
Sbjct: 29 LCKSKLLFLGEQS------------------------GKTSIISRFMYNSFGCACQATVG 64
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKTMYLED+ V+LQLWDTAGQERF SLIPSYIRDST+AVVVYDITN NSF +T KW
Sbjct: 65 IDFLSKTMYLEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSFKETDKW 124
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
++ V ERG DV+IM L+GN
Sbjct: 125 VEHVXAERGDDVVIM-----------------------------------------LLGN 143
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
K D +KRQV+ E+GE K++ LNVMFIETSAK GYNVK++
Sbjct: 144 KIDFDNKRQVTAEQGEEKSRNLNVMFIETSAKTGYNVKKL 183
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/124 (70%), Positives = 102/124 (82%), Gaps = 3/124 (2%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+LQLWDTAGQERF SLIPSYIRDST+AVVVYDITN NSF +T KW++ V ERG DV+I
Sbjct: 79 VQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSFKETDKWVEHVXAERGDDVVI 138
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
ML+GNK D +KRQV+ E+GE K++ LNVMFIETSAK GYNVK+LFRRVA+AL ST
Sbjct: 139 MLLGNKIDFDNKRQVTAEQGEEKSRNLNVMFIETSAKTGYNVKKLFRRVASALL---STR 195
Query: 350 NKPP 353
PP
Sbjct: 196 TSPP 199
>gi|50292103|ref|XP_448484.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527796|emb|CAG61445.1| unnamed protein product [Candida glabrata]
Length = 219
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 112/221 (50%), Positives = 138/221 (62%), Gaps = 64/221 (28%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K+K+VFLGEQ VGKTSL ITRFMYD+FD+ YQATIG
Sbjct: 9 LTKYKIVFLGEQGVGKTSL-----------------------ITRFMYDTFDDNYQATIG 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKTMYL+D+T+RLQLWDTAGQERFRSLIPSYIRDS VA+VVYDIT SF KW
Sbjct: 46 IDFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSYIRDSRVAIVVYDITKRKSFEFIDKW 105
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
I+DV+ ERG++ +VI+ +VGN
Sbjct: 106 IEDVKNERGAE----------------------------------------NVILCVVGN 125
Query: 191 KTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQV 230
K+DL+D+RQV+ EEGE+KA++L +F++TS K GYNVK +
Sbjct: 126 KSDLADERQVTAEEGEKKAQDLGAKIFMQTSTKVGYNVKNL 166
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/130 (60%), Positives = 103/130 (79%), Gaps = 2/130 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
K +RLQLWDTAGQERFRSLIPSYIRDS VA+VVYDIT SF KWI+DV+ ERG++
Sbjct: 58 KTIRLQLWDTAGQERFRSLIPSYIRDSRVAIVVYDITKRKSFEFIDKWIEDVKNERGAEN 117
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPGM 345
VI+ +VGNK+DL+D+RQV+ EEGE+KA++L +F++TS K GYNVK LF+++A +LP
Sbjct: 118 VILCVVGNKSDLADERQVTAEEGEKKAQDLGAKIFMQTSTKVGYNVKNLFKKIAKSLPEF 177
Query: 346 DSTENKPPED 355
++ P E+
Sbjct: 178 QDSDANPLEN 187
>gi|58331779|gb|AAW70387.1| At5g10260 [Arabidopsis thaliana]
gi|89111880|gb|ABD60712.1| At5g10260 [Arabidopsis thaliana]
Length = 178
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 108/174 (62%), Positives = 120/174 (68%), Gaps = 41/174 (23%)
Query: 57 MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY 116
MYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VY
Sbjct: 1 MYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 60
Query: 117 DITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVR 176
D+ N SF TSKWI+DVRTERGSDVII+L
Sbjct: 61 DVANRQSFLNTSKWIEDVRTERGSDVIIVL------------------------------ 90
Query: 177 TERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL DKRQVS EEG+ KA++ V+FIETSAKAG+N+K +
Sbjct: 91 -----------VGNKTDLVDKRQVSIEEGDNKARDYGVIFIETSAKAGFNIKPL 133
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 111/128 (86%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ N SF TSKWI+DVRTERGSDV
Sbjct: 27 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSKWIEDVRTERGSDV 86
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL DKRQVS EEG+ KA++ V+FIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 87 IIVLVGNKTDLVDKRQVSIEEGDNKARDYGVIFIETSAKAGFNIKPLFRKIAAALPGMET 146
Query: 348 TENKPPED 355
+ ED
Sbjct: 147 LSSTKQED 154
>gi|45201353|ref|NP_986923.1| AGR257Cp [Ashbya gossypii ATCC 10895]
gi|44986287|gb|AAS54747.1| AGR257Cp [Ashbya gossypii ATCC 10895]
gi|374110173|gb|AEY99078.1| FAGR257Cp [Ashbya gossypii FDAG1]
Length = 220
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 113/218 (51%), Positives = 135/218 (61%), Gaps = 64/218 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K+K+VFLGEQ VGKTSL ITRFMYD+FD+ YQATIG
Sbjct: 10 LSKYKIVFLGEQGVGKTSL-----------------------ITRFMYDTFDDHYQATIG 46
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKT+YL+DRT+RLQLWDTAGQERFRSLIPSYIRDS VA+VVYDITN SF KW
Sbjct: 47 IDFLSKTVYLDDRTIRLQLWDTAGQERFRSLIPSYIRDSHVAIVVYDITNKKSFEYIDKW 106
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
++DVR ERG + ++I+ +VGN
Sbjct: 107 VEDVRNERGEE----------------------------------------NLILCIVGN 126
Query: 191 KTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNV 227
K+DL D+R+V+ EEGE KAK LN +F+ETS KAG+NV
Sbjct: 127 KSDLVDERKVTVEEGENKAKLLNAKIFVETSTKAGFNV 164
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 77/118 (65%), Positives = 95/118 (80%), Gaps = 2/118 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
+ +RLQLWDTAGQERFRSLIPSYIRDS VA+VVYDITN SF KW++DVR ERG +
Sbjct: 59 RTIRLQLWDTAGQERFRSLIPSYIRDSHVAIVVYDITNKKSFEYIDKWVEDVRNERGEEN 118
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALP 343
+I+ +VGNK+DL D+R+V+ EEGE KAK LN +F+ETS KAG+NV LF+R+A LP
Sbjct: 119 LILCIVGNKSDLVDERKVTVEEGENKAKLLNAKIFVETSTKAGFNVGALFKRIAKLLP 176
>gi|403337670|gb|EJY68057.1| Rab6 [Oxytricha trifallax]
gi|403366411|gb|EJY83007.1| Rab6 [Oxytricha trifallax]
Length = 235
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 112/218 (51%), Positives = 133/218 (61%), Gaps = 64/218 (29%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
K+K+VFLG+QSVGKTSL I RF D+FD YQATIGID
Sbjct: 13 KYKIVFLGDQSVGKTSL-----------------------ILRFTQDTFDGNYQATIGID 49
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
FLSKTMY++D+ VRLQLWDTAGQERFRSLIPSYI+DS+VAVVVYDITN SF KWID
Sbjct: 50 FLSKTMYVDDKMVRLQLWDTAGQERFRSLIPSYIKDSSVAVVVYDITNKFSFTNVQKWID 109
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
D + RG+D++I+L VGNK
Sbjct: 110 DAKAIRGNDLLIIL-----------------------------------------VGNKI 128
Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
D+++KRQV TEEG+ AKEL VMFIETSAKAG N++Q+
Sbjct: 129 DMAEKRQVGTEEGQALAKELGVMFIETSAKAGINIRQL 166
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 89/138 (64%), Positives = 107/138 (77%), Gaps = 11/138 (7%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K VRLQLWDTAGQERFRSLIPSYI+DS+VAVVVYDITN SF KWIDD + RG+D+
Sbjct: 60 KMVRLQLWDTAGQERFRSLIPSYIKDSSVAVVVYDITNKFSFTNVQKWIDDAKAIRGNDL 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM-- 345
+I+LVGNK D+++KRQV TEEG+ AKEL VMFIETSAKAG N++QLF+ +A +LPGM
Sbjct: 120 LIILVGNKIDMAEKRQVGTEEGQALAKELGVMFIETSAKAGINIRQLFQNLATSLPGMES 179
Query: 346 ---------DSTENKPPE 354
DST +K P+
Sbjct: 180 AGATRKGDPDSTHDKQPQ 197
>gi|281353162|gb|EFB28746.1| hypothetical protein PANDA_003355 [Ailuropoda melanoleuca]
Length = 105
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 99/105 (94%), Positives = 102/105 (97%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDVII
Sbjct: 1 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVII 60
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 334
MLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 61 MLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQV 105
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/146 (68%), Positives = 102/146 (69%), Gaps = 41/146 (28%)
Query: 85 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 144
VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NS
Sbjct: 1 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNS--------------------- 39
Query: 145 MLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEE 204
F QT+KWIDDVRTERGSDVIIMLVGNKTDL+DKRQVS EE
Sbjct: 40 --------------------FQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEE 79
Query: 205 GERKAKELNVMFIETSAKAGYNVKQV 230
GERKAKELNVMFIETSAKAGYNVKQV
Sbjct: 80 GERKAKELNVMFIETSAKAGYNVKQV 105
>gi|344252929|gb|EGW09033.1| Ras-related protein Rab-6A [Cricetulus griseus]
Length = 108
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 99/105 (94%), Positives = 102/105 (97%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDVII
Sbjct: 1 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVII 60
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 334
MLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 61 MLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQV 105
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/146 (68%), Positives = 102/146 (69%), Gaps = 41/146 (28%)
Query: 85 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 144
VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NS
Sbjct: 1 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNS--------------------- 39
Query: 145 MLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEE 204
F QT+KWIDDVRTERGSDVIIMLVGNKTDL+DKRQVS EE
Sbjct: 40 --------------------FQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEE 79
Query: 205 GERKAKELNVMFIETSAKAGYNVKQV 230
GERKAKELNVMFIETSAKAGYNVKQV
Sbjct: 80 GERKAKELNVMFIETSAKAGYNVKQV 105
>gi|297797521|ref|XP_002866645.1| hypothetical protein ARALYDRAFT_496719 [Arabidopsis lyrata subsp.
lyrata]
gi|297312480|gb|EFH42904.1| hypothetical protein ARALYDRAFT_496719 [Arabidopsis lyrata subsp.
lyrata]
Length = 206
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/230 (49%), Positives = 137/230 (59%), Gaps = 67/230 (29%)
Query: 5 GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT 64
GD G + +KLVFLG+Q VGKTS+I T FMY FD +
Sbjct: 2 GDLG---KGYKLVFLGDQGVGKTSII-----------------------TCFMYGKFDTS 35
Query: 65 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 124
YQATIGIDFLSKTM EDRT RLQLWDTAGQERF+SL+PSYIRDS+VAV+VYD+ + SF
Sbjct: 36 YQATIGIDFLSKTMRYEDRTFRLQLWDTAGQERFKSLVPSYIRDSSVAVIVYDVASKQSF 95
Query: 125 HQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVI 184
TSKWI++VR ERGS VII+L
Sbjct: 96 LNTSKWIEEVRAERGSHVIIVL-------------------------------------- 117
Query: 185 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
VGNKTDL +KRQVS EEG+ KA+E +F+ETSAKAG+N+K + ++
Sbjct: 118 ---VGNKTDLVNKRQVSIEEGDNKAREFGALFMETSAKAGFNIKPLFCKI 164
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 82/131 (62%), Positives = 104/131 (79%)
Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
Y + RLQLWDTAGQERF+SL+PSYIRDS+VAV+VYD+ + SF TSKWI++VR ERG
Sbjct: 51 YEDRTFRLQLWDTAGQERFKSLVPSYIRDSSVAVIVYDVASKQSFLNTSKWIEEVRAERG 110
Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
S VII+LVGNKTDL +KRQVS EEG+ KA+E +F+ETSAKAG+N+K LF ++ +AL G
Sbjct: 111 SHVIIVLVGNKTDLVNKRQVSIEEGDNKAREFGALFMETSAKAGFNIKPLFCKITSALQG 170
Query: 345 MDSTENKPPED 355
++ PED
Sbjct: 171 NEAVSWTKPED 181
>gi|296084653|emb|CBI25776.3| unnamed protein product [Vitis vinifera]
Length = 178
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 105/174 (60%), Positives = 120/174 (68%), Gaps = 41/174 (23%)
Query: 57 MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY 116
MYD FD TYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS+VAV+VY
Sbjct: 1 MYDKFDATYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 60
Query: 117 DITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVR 176
D+ N SF TSKWI++VRTERG+DVII+L
Sbjct: 61 DVGNRQSFLNTSKWIEEVRTERGTDVIIVL------------------------------ 90
Query: 177 TERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL DKRQVS EEG+ K+++ VMFIETSAKAG+N+K +
Sbjct: 91 -----------VGNKTDLVDKRQVSIEEGDTKSRDFGVMFIETSAKAGFNIKPL 133
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 90/128 (70%), Positives = 111/128 (86%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ N SF TSKWI++VRTERG+DV
Sbjct: 27 RTIRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVGNRQSFLNTSKWIEEVRTERGTDV 86
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL DKRQVS EEG+ K+++ VMFIETSAKAG+N+K LFR++A+ALPGM++
Sbjct: 87 IIVLVGNKTDLVDKRQVSIEEGDTKSRDFGVMFIETSAKAGFNIKPLFRKIASALPGMET 146
Query: 348 TENKPPED 355
+ ED
Sbjct: 147 LSSTKQED 154
>gi|403305127|ref|XP_003943122.1| PREDICTED: LOW QUALITY PROTEIN: ras-related protein Rab-41 [Saimiri
boliviensis boliviensis]
Length = 225
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 117/239 (48%), Positives = 137/239 (57%), Gaps = 73/239 (30%)
Query: 1 MSSSGDFG---------NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTS 51
M + DFG L K KLVFLGEQSVGKTS+I
Sbjct: 11 MEEARDFGLKAAEGPEYQSLCKAKLVFLGEQSVGKTSII--------------------- 49
Query: 52 LITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV 111
TRF YDSF T+QAT+G+DFLSKTM LEDR V+LQLWDTAGQERF SLIPSYIR ST+
Sbjct: 50 --TRFTYDSFGCTFQATVGVDFLSKTMCLEDRIVQLQLWDTAGQERFHSLIPSYIRGSTI 107
Query: 112 AVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW 171
AVVVYD + +SF +T KW++ VR ERG DV+IML
Sbjct: 108 AVVVYDPGDISSFKETDKWVEHVRAERGDDVVIML------------------------- 142
Query: 172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNK DL++KRQV+ EEGE K++ LNVMFIETSAK YNV ++
Sbjct: 143 ----------------VGNKIDLNNKRQVTAEEGEEKSRNLNVMFIETSAKTSYNVDKL 185
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 84/125 (67%), Positives = 100/125 (80%), Gaps = 1/125 (0%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+LQLWDTAGQERF SLIPSYIR ST+AVVVYD + +SF +T KW++ VR ERG DV+I
Sbjct: 81 VQLQLWDTAGQERFHSLIPSYIRGSTIAVVVYDPGDISSFKETDKWVEHVRAERGDDVVI 140
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
MLVGNK DL++KRQV+ EEGE K++ LNVMFIETSAK YNV +LFR VA+ LP ST
Sbjct: 141 MLVGNKIDLNNKRQVTAEEGEEKSRNLNVMFIETSAKTSYNVDKLFRHVASVLPST-STS 199
Query: 350 NKPPE 354
+ P E
Sbjct: 200 HPPKE 204
>gi|448090573|ref|XP_004197105.1| Piso0_004342 [Millerozyma farinosa CBS 7064]
gi|448094995|ref|XP_004198136.1| Piso0_004342 [Millerozyma farinosa CBS 7064]
gi|359378527|emb|CCE84786.1| Piso0_004342 [Millerozyma farinosa CBS 7064]
gi|359379558|emb|CCE83755.1| Piso0_004342 [Millerozyma farinosa CBS 7064]
Length = 208
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 117/228 (51%), Positives = 136/228 (59%), Gaps = 65/228 (28%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
SS + + LRK+K+VFLG+QS VGKTSLITRFMYD+FD
Sbjct: 2 SSAEKTSVLRKYKIVFLGDQSA----------------------VGKTSLITRFMYDTFD 39
Query: 63 NTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
+ Y ATIGIDFLSKTMYLED +T+RLQLWDTAGQERFRSLIPSYIRDS VAVV YDITN
Sbjct: 40 DQYAATIGIDFLSKTMYLEDNKTIRLQLWDTAGQERFRSLIPSYIRDSHVAVVCYDITNR 99
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF KWI DV++ERG DVII++
Sbjct: 100 KSFQNLHKWIQDVKSERGEDVIIVI----------------------------------- 124
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF-IETSAKAGYNVK 228
VGNK DL+ +RQV++EEGE AK + F IETS KA +NVK
Sbjct: 125 ------VGNKLDLNARRQVTSEEGEEYAKSVGASFSIETSTKANHNVK 166
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 80/122 (65%), Positives = 97/122 (79%), Gaps = 1/122 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K +RLQLWDTAGQERFRSLIPSYIRDS VAVV YDITN SF KWI DV++ERG DV
Sbjct: 61 KTIRLQLWDTAGQERFRSLIPSYIRDSHVAVVCYDITNRKSFQNLHKWIQDVKSERGEDV 120
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF-IETSAKAGYNVKQLFRRVAAALPGMD 346
II++VGNK DL+ +RQV++EEGE AK + F IETS KA +NVK LF+++A++LP +
Sbjct: 121 IIVIVGNKLDLNARRQVTSEEGEEYAKSVGASFSIETSTKANHNVKLLFKKIASSLPEFE 180
Query: 347 ST 348
ST
Sbjct: 181 ST 182
>gi|294657272|ref|XP_459580.2| DEHA2E05918p [Debaryomyces hansenii CBS767]
gi|199432566|emb|CAG87807.2| DEHA2E05918p [Debaryomyces hansenii CBS767]
Length = 204
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 117/227 (51%), Positives = 136/227 (59%), Gaps = 66/227 (29%)
Query: 6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTY 65
D N LRK+K+VFLG+QSVGKTSL ITRFMYD+FD+ Y
Sbjct: 2 DKSNILRKYKIVFLGDQSVGKTSL-----------------------ITRFMYDTFDDQY 38
Query: 66 QATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 124
ATIGIDFLSKTMYLED +T+RLQLWDTAGQERFRSLIPSYIRDS VAV+ YDITN SF
Sbjct: 39 AATIGIDFLSKTMYLEDNKTIRLQLWDTAGQERFRSLIPSYIRDSHVAVICYDITNKKSF 98
Query: 125 HQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVI 184
+KWI DV+ ERG DVII+
Sbjct: 99 ENLNKWIQDVKLERGDDVIIV--------------------------------------- 119
Query: 185 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMF-IETSAKAGYNVKQV 230
+VGNK+DL++KRQV+ EE E K +N F IETS KA +NVKQ+
Sbjct: 120 --VVGNKSDLNNKRQVTMEECEAYLKSINGKFCIETSTKANHNVKQL 164
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/131 (61%), Positives = 101/131 (77%), Gaps = 4/131 (3%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K +RLQLWDTAGQERFRSLIPSYIRDS VAV+ YDITN SF +KWI DV+ ERG DV
Sbjct: 57 KTIRLQLWDTAGQERFRSLIPSYIRDSHVAVICYDITNKKSFENLNKWIQDVKLERGDDV 116
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF-IETSAKAGYNVKQLFRRVAAALPGMD 346
II++VGNK+DL++KRQV+ EE E K +N F IETS KA +NVKQLF+++A++LP ++
Sbjct: 117 IIVVVGNKSDLNNKRQVTMEECEAYLKSINGKFCIETSTKANHNVKQLFKKIASSLPDVE 176
Query: 347 ST---ENKPPE 354
+ E PE
Sbjct: 177 KSTKDETTQPE 187
>gi|15238317|ref|NP_201304.1| RAB GTPase homolog H1A [Arabidopsis thaliana]
gi|75335533|sp|Q9LV79.1|RAH1A_ARATH RecName: Full=Ras-related protein RABH1a; Short=AtRABH1a
gi|8843763|dbj|BAA97311.1| GTP binding protein-like [Arabidopsis thaliana]
gi|332010596|gb|AED97979.1| RAB GTPase homolog H1A [Arabidopsis thaliana]
Length = 206
Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 113/230 (49%), Positives = 136/230 (59%), Gaps = 67/230 (29%)
Query: 5 GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT 64
GD G + +KLVFLG+Q VGKTS+I T FMY FD +
Sbjct: 2 GDLG---KGYKLVFLGDQGVGKTSII-----------------------TCFMYGKFDTS 35
Query: 65 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 124
YQATIGIDFLSKT EDRT RLQLWDTAGQERF+SL+PSYIRDS+VAV+VYD+ + SF
Sbjct: 36 YQATIGIDFLSKTTRYEDRTFRLQLWDTAGQERFKSLVPSYIRDSSVAVIVYDVASKQSF 95
Query: 125 HQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVI 184
TSKWI++VR ERGS VII+L
Sbjct: 96 INTSKWIEEVRAERGSYVIIVL-------------------------------------- 117
Query: 185 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
VGNKTDL +KRQVS EEGE KA+E +F+ETSAKAG+N+K + ++
Sbjct: 118 ---VGNKTDLVNKRQVSIEEGENKAREFGALFMETSAKAGFNIKPLFCKI 164
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/131 (62%), Positives = 103/131 (78%)
Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
Y + RLQLWDTAGQERF+SL+PSYIRDS+VAV+VYD+ + SF TSKWI++VR ERG
Sbjct: 51 YEDRTFRLQLWDTAGQERFKSLVPSYIRDSSVAVIVYDVASKQSFINTSKWIEEVRAERG 110
Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
S VII+LVGNKTDL +KRQVS EEGE KA+E +F+ETSAKAG+N+K LF ++ +AL G
Sbjct: 111 SYVIIVLVGNKTDLVNKRQVSIEEGENKAREFGALFMETSAKAGFNIKPLFCKITSALQG 170
Query: 345 MDSTENKPPED 355
++ ED
Sbjct: 171 NEAVSWTKQED 181
>gi|384487253|gb|EIE79433.1| GTP-binding protein ryh1 [Rhizopus delemar RA 99-880]
Length = 153
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 93/121 (76%), Positives = 111/121 (91%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYDI+N SF TSKWIDDVR ERG DV
Sbjct: 6 KTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDISNRQSFTNTSKWIDDVRAERGDDV 65
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNK+DLSDKR+V+T++GE++AKELNVMFIETSAKAG+NVK LF+++A +LPG+D
Sbjct: 66 IIVLVGNKSDLSDKREVTTDDGEKRAKELNVMFIETSAKAGHNVKTLFKKIAQSLPGVDG 125
Query: 348 T 348
+
Sbjct: 126 S 126
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/151 (60%), Positives = 104/151 (68%), Gaps = 41/151 (27%)
Query: 78 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE 137
MYLED+TVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYDI+N SF TSKWIDDVR E
Sbjct: 1 MYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDISNRQSFTNTSKWIDDVRAE 60
Query: 138 RGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 197
RG DVII+L VGNK+DLSDK
Sbjct: 61 RGDDVIIVL-----------------------------------------VGNKSDLSDK 79
Query: 198 RQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
R+V+T++GE++AKELNVMFIETSAKAG+NVK
Sbjct: 80 REVTTDDGEKRAKELNVMFIETSAKAGHNVK 110
>gi|226531121|ref|NP_001141348.1| uncharacterized protein LOC100273439 [Zea mays]
gi|194704110|gb|ACF86139.1| unknown [Zea mays]
Length = 190
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 95/128 (74%), Positives = 112/128 (87%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+V+D+ + SF TSKWI++VRTERGSDV
Sbjct: 38 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQSFLNTSKWIEEVRTERGSDV 97
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL DKRQVS EEGE KAK+L VMFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 98 IIVLVGNKTDLVDKRQVSIEEGEGKAKDLGVMFIETSAKAGFNIKALFRKIAAALPGMET 157
Query: 348 TENKPPED 355
+ ED
Sbjct: 158 LSSAKQED 165
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/182 (59%), Positives = 121/182 (66%), Gaps = 42/182 (23%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
KT F + SF N QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD
Sbjct: 5 KTGRSRGFGFVSFRNQ-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 63
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
S+VAV+V+D+ + SF TSKWI++VRTERGSDVII+L
Sbjct: 64 SSVAVIVFDVASRQSFLNTSKWIEEVRTERGSDVIIVL---------------------- 101
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDL DKRQVS EEGE KAK+L VMFIETSAKAG+N+K
Sbjct: 102 -------------------VGNKTDLVDKRQVSIEEGEGKAKDLGVMFIETSAKAGFNIK 142
Query: 229 QV 230
+
Sbjct: 143 AL 144
>gi|10120632|pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 112/216 (51%), Positives = 129/216 (59%), Gaps = 64/216 (29%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
K+KLVFLGEQ+VGKTS+I TRF YD+FDN YQ+TIGID
Sbjct: 1 KYKLVFLGEQAVGKTSII-----------------------TRFXYDTFDNNYQSTIGID 37
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
FLSKT+YL++ VRLQLWDTAGQERFRSLIPSYIRDS A+VVYDITN SF T+KWI
Sbjct: 38 FLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQ 97
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
D+ ERG DVII L VGNKT
Sbjct: 98 DILNERGKDVIIAL-----------------------------------------VGNKT 116
Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
DL D R+V+ EEG +KA+E N F ETSAKAG+N+K
Sbjct: 117 DLGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIK 152
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/113 (69%), Positives = 91/113 (80%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
VRLQLWDTAGQERFRSLIPSYIRDS A+VVYDITN SF T+KWI D+ ERG DVII
Sbjct: 50 VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVII 109
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
LVGNKTDL D R+V+ EEG +KA+E N F ETSAKAG+N+K LF++ A+ L
Sbjct: 110 ALVGNKTDLGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
>gi|344249535|gb|EGW05639.1| Ras-related protein Rab-6B [Cricetulus griseus]
Length = 140
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 96/115 (83%), Positives = 107/115 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 6 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 65
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
IIMLVGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQ+ ++A +L
Sbjct: 66 IIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQVRTQLAMSL 120
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/157 (66%), Positives = 111/157 (70%), Gaps = 41/157 (26%)
Query: 78 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE 137
MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTE
Sbjct: 1 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTE 60
Query: 138 RGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 197
RGSDVIIML VGNKTDL+DK
Sbjct: 61 RGSDVIIML-----------------------------------------VGNKTDLADK 79
Query: 198 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
RQ++ EEGE++AKEL+VMFIETSAK GYNVKQVR QL
Sbjct: 80 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQVRTQL 116
>gi|254572922|ref|XP_002493570.1| GTPase, Ras-like GTP binding protein involved in the secretory
pathway [Komagataella pastoris GS115]
gi|238033369|emb|CAY71391.1| GTPase, Ras-like GTP binding protein involved in the secretory
pathway [Komagataella pastoris GS115]
Length = 203
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 109/221 (49%), Positives = 132/221 (59%), Gaps = 65/221 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K+K+VFLG+Q VGKTSL ITRFMYD+F++ Y AT+G
Sbjct: 3 LTKYKIVFLGDQGVGKTSL-----------------------ITRFMYDTFNDHYAATVG 39
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKT+YL+D+TVRLQLWDTAGQERFRSL+PSYIRDS VA++VYD T+ +SF KW
Sbjct: 40 IDFLSKTLYLDDKTVRLQLWDTAGQERFRSLVPSYIRDSNVAIIVYDTTSKSSFQSVDKW 99
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
DDVR ERG +VII LV N
Sbjct: 100 CDDVRNERGENVII-----------------------------------------CLVAN 118
Query: 191 KTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQV 230
K DL+D+R +STE+GE+KA L V +FIETS K GYNVK +
Sbjct: 119 KADLADQRVISTEDGEKKATGLKVDLFIETSTKKGYNVKNL 159
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/128 (63%), Positives = 97/128 (75%), Gaps = 1/128 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K VRLQLWDTAGQERFRSL+PSYIRDS VA++VYD T+ +SF KW DDVR ERG +V
Sbjct: 52 KTVRLQLWDTAGQERFRSLVPSYIRDSNVAIIVYDTTSKSSFQSVDKWCDDVRNERGENV 111
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPGMD 346
II LV NK DL+D+R +STE+GE+KA L V +FIETS K GYNVK LFR+VA L D
Sbjct: 112 IICLVANKADLADQRVISTEDGEKKATGLKVDLFIETSTKKGYNVKNLFRKVAKTLLEQD 171
Query: 347 STENKPPE 354
+ + P+
Sbjct: 172 GSPGQDPK 179
>gi|306014631|gb|ADM76369.1| Rab-like protein, partial [Picea sitchensis]
gi|306014633|gb|ADM76370.1| Rab-like protein, partial [Picea sitchensis]
gi|306014635|gb|ADM76371.1| Rab-like protein, partial [Picea sitchensis]
gi|306014637|gb|ADM76372.1| Rab-like protein, partial [Picea sitchensis]
gi|306014639|gb|ADM76373.1| Rab-like protein, partial [Picea sitchensis]
gi|306014641|gb|ADM76374.1| Rab-like protein, partial [Picea sitchensis]
gi|306014643|gb|ADM76375.1| Rab-like protein, partial [Picea sitchensis]
gi|306014645|gb|ADM76376.1| Rab-like protein, partial [Picea sitchensis]
gi|306014647|gb|ADM76377.1| Rab-like protein, partial [Picea sitchensis]
gi|306014649|gb|ADM76378.1| Rab-like protein, partial [Picea sitchensis]
gi|306014651|gb|ADM76379.1| Rab-like protein, partial [Picea sitchensis]
gi|306014653|gb|ADM76380.1| Rab-like protein, partial [Picea sitchensis]
gi|306014655|gb|ADM76381.1| Rab-like protein, partial [Picea sitchensis]
gi|306014657|gb|ADM76382.1| Rab-like protein, partial [Picea sitchensis]
gi|306014659|gb|ADM76383.1| Rab-like protein, partial [Picea sitchensis]
gi|306014661|gb|ADM76384.1| Rab-like protein, partial [Picea sitchensis]
gi|306014663|gb|ADM76385.1| Rab-like protein, partial [Picea sitchensis]
gi|306014665|gb|ADM76386.1| Rab-like protein, partial [Picea sitchensis]
gi|306014667|gb|ADM76387.1| Rab-like protein, partial [Picea sitchensis]
gi|306014669|gb|ADM76388.1| Rab-like protein, partial [Picea sitchensis]
gi|306014671|gb|ADM76389.1| Rab-like protein, partial [Picea sitchensis]
gi|306014673|gb|ADM76390.1| Rab-like protein, partial [Picea sitchensis]
gi|306014675|gb|ADM76391.1| Rab-like protein, partial [Picea sitchensis]
gi|306014677|gb|ADM76392.1| Rab-like protein, partial [Picea sitchensis]
gi|306014679|gb|ADM76393.1| Rab-like protein, partial [Picea sitchensis]
gi|306014681|gb|ADM76394.1| Rab-like protein, partial [Picea sitchensis]
gi|306014683|gb|ADM76395.1| Rab-like protein, partial [Picea sitchensis]
gi|306014685|gb|ADM76396.1| Rab-like protein, partial [Picea sitchensis]
gi|306014687|gb|ADM76397.1| Rab-like protein, partial [Picea sitchensis]
gi|306014689|gb|ADM76398.1| Rab-like protein, partial [Picea sitchensis]
gi|306014691|gb|ADM76399.1| Rab-like protein, partial [Picea sitchensis]
gi|306014693|gb|ADM76400.1| Rab-like protein, partial [Picea sitchensis]
gi|306014695|gb|ADM76401.1| Rab-like protein, partial [Picea sitchensis]
gi|306014697|gb|ADM76402.1| Rab-like protein, partial [Picea sitchensis]
gi|306014699|gb|ADM76403.1| Rab-like protein, partial [Picea sitchensis]
gi|306014701|gb|ADM76404.1| Rab-like protein, partial [Picea sitchensis]
gi|306014703|gb|ADM76405.1| Rab-like protein, partial [Picea sitchensis]
gi|306014705|gb|ADM76406.1| Rab-like protein, partial [Picea sitchensis]
gi|306014707|gb|ADM76407.1| Rab-like protein, partial [Picea sitchensis]
gi|306014709|gb|ADM76408.1| Rab-like protein, partial [Picea sitchensis]
gi|306014711|gb|ADM76409.1| Rab-like protein, partial [Picea sitchensis]
gi|306014713|gb|ADM76410.1| Rab-like protein, partial [Picea sitchensis]
gi|306014715|gb|ADM76411.1| Rab-like protein, partial [Picea sitchensis]
gi|306014717|gb|ADM76412.1| Rab-like protein, partial [Picea sitchensis]
Length = 160
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 92/128 (71%), Positives = 111/128 (86%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+V+D+ N SF T++WI++VRTERGSDV
Sbjct: 9 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVANRQSFLNTARWIEEVRTERGSDV 68
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL DKRQVS EEG+ KA+E VMFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 69 IIVLVGNKTDLVDKRQVSIEEGDAKAREFGVMFIETSAKAGFNIKALFRKIAAALPGMET 128
Query: 348 TENKPPED 355
+ ED
Sbjct: 129 LSSTKQED 136
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 90/156 (57%), Positives = 104/156 (66%), Gaps = 41/156 (26%)
Query: 75 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134
SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+V+D+ N SF T++WI++V
Sbjct: 1 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVANRQSFLNTARWIEEV 60
Query: 135 RTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL 194
RTERGSDVII+L VGNKTDL
Sbjct: 61 RTERGSDVIIVL-----------------------------------------VGNKTDL 79
Query: 195 SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
DKRQVS EEG+ KA+E VMFIETSAKAG+N+K +
Sbjct: 80 VDKRQVSIEEGDAKAREFGVMFIETSAKAGFNIKAL 115
>gi|452825788|gb|EME32783.1| Rab family, other [Galdieria sulphuraria]
Length = 178
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 119/174 (68%), Gaps = 41/174 (23%)
Query: 57 MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY 116
MYD FDN YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VY
Sbjct: 1 MYDKFDNNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 60
Query: 117 DITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVR 176
D+TN SF ++W+++V+ ERG DV+++L
Sbjct: 61 DVTNRASFLSVNRWLEEVKNERGEDVVLVL------------------------------ 90
Query: 177 TERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTD +++RQVSTEEGE KAKE +MF+ETSAKAG+NVK +
Sbjct: 91 -----------VGNKTDQAERRQVSTEEGEAKAKEYGIMFMETSAKAGFNVKAL 133
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/122 (68%), Positives = 108/122 (88%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+TN SF ++W+++V+ ERG DV
Sbjct: 27 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVTNRASFLSVNRWLEEVKNERGEDV 86
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+++LVGNKTD +++RQVSTEEGE KAKE +MF+ETSAKAG+NVK LFR++A+ALPGM+S
Sbjct: 87 VLVLVGNKTDQAERRQVSTEEGEAKAKEYGIMFMETSAKAGFNVKALFRKIASALPGMES 146
Query: 348 TE 349
+
Sbjct: 147 VQ 148
>gi|118383836|ref|XP_001025072.1| Ras family protein [Tetrahymena thermophila]
gi|89306839|gb|EAS04827.1| Ras family protein [Tetrahymena thermophila SB210]
Length = 277
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/228 (48%), Positives = 128/228 (56%), Gaps = 64/228 (28%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
+ G PL K+KLVFLG+Q VGKTS+I RFM+D+FD
Sbjct: 5 TKGSIATPLSKYKLVFLGDQGVGKTSIIN-----------------------RFMFDTFD 41
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
T+GIDF+SKT+Y EDRT+RLQLWDTAGQERFRSLIPSYIRDS VAVV YDITN
Sbjct: 42 GKDHPTVGIDFISKTLYYEDRTIRLQLWDTAGQERFRSLIPSYIRDSAVAVVCYDITNKV 101
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF +KWI+DVR ERG DVII LVGS
Sbjct: 102 SFDNVAKWIEDVRAERGHDVIICLVGS--------------------------------- 128
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
K DL DKR V T +G+ KAKEL+V F E SA G NV+Q+
Sbjct: 129 --------KNDLVDKRVVQTTDGQVKAKELDVKFFEVSALTGQNVQQL 168
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 82/125 (65%), Positives = 95/125 (76%)
Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
Y + +RLQLWDTAGQERFRSLIPSYIRDS VAVV YDITN SF +KWI+DVR ERG
Sbjct: 59 YEDRTIRLQLWDTAGQERFRSLIPSYIRDSAVAVVCYDITNKVSFDNVAKWIEDVRAERG 118
Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
DVII LVG+K DL DKR V T +G+ KAKEL+V F E SA G NV+QLFR +A LPG
Sbjct: 119 HDVIICLVGSKNDLVDKRVVQTTDGQVKAKELDVKFFEVSALTGQNVQQLFRSIANMLPG 178
Query: 345 MDSTE 349
+ ++
Sbjct: 179 AEVSQ 183
>gi|307777798|dbj|BAJ21295.1| Rab-family small GTPase Rab6A [Tetrahymena thermophila]
Length = 229
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/228 (48%), Positives = 128/228 (56%), Gaps = 64/228 (28%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
+ G PL K+KLVFLG+Q VGKTS+I RFM+D+FD
Sbjct: 5 TKGSIATPLSKYKLVFLGDQGVGKTSIIN-----------------------RFMFDTFD 41
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
T+GIDF+SKT+Y EDRT+RLQLWDTAGQERFRSLIPSYIRDS VAVV YDITN
Sbjct: 42 GKDHPTVGIDFISKTLYYEDRTIRLQLWDTAGQERFRSLIPSYIRDSAVAVVCYDITNKV 101
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF +KWI+DVR ERG DVII LVGS
Sbjct: 102 SFDNVAKWIEDVRAERGHDVIICLVGS--------------------------------- 128
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
K DL DKR V T +G+ KAKEL+V F E SA G NV+Q+
Sbjct: 129 --------KNDLVDKRVVQTTDGQVKAKELDVKFFEVSALTGQNVQQL 168
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 82/125 (65%), Positives = 95/125 (76%)
Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
Y + +RLQLWDTAGQERFRSLIPSYIRDS VAVV YDITN SF +KWI+DVR ERG
Sbjct: 59 YEDRTIRLQLWDTAGQERFRSLIPSYIRDSAVAVVCYDITNKVSFDNVAKWIEDVRAERG 118
Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
DVII LVG+K DL DKR V T +G+ KAKEL+V F E SA G NV+QLFR +A LPG
Sbjct: 119 HDVIICLVGSKNDLVDKRVVQTTDGQVKAKELDVKFFEVSALTGQNVQQLFRSIANMLPG 178
Query: 345 MDSTE 349
+ ++
Sbjct: 179 AEVSQ 183
>gi|50547479|ref|XP_501209.1| YALI0B22154p [Yarrowia lipolytica]
gi|49647075|emb|CAG83462.1| YALI0B22154p [Yarrowia lipolytica CLIB122]
Length = 200
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/220 (47%), Positives = 131/220 (59%), Gaps = 64/220 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++KFKLV +GEQSVGKTSL ITR MYD FD Y+ATIG
Sbjct: 7 IQKFKLVIVGEQSVGKTSL-----------------------ITRIMYDKFDQNYEATIG 43
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
I FLSK MYL DRT+RLQLWDTAGQERFRSL+P+YIRDS +A+VVY I + SF KW
Sbjct: 44 IQFLSKPMYLPDRTIRLQLWDTAGQERFRSLVPAYIRDSHIAIVVYAIDSRKSFVDVDKW 103
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
I+DV+ ERG+ V++ML VGN
Sbjct: 104 IEDVKAERGNQVVLML-----------------------------------------VGN 122
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
K+DL + R+V+TEEG+ KAK+ + +F+ETSAKAG+NVK +
Sbjct: 123 KSDLEESREVTTEEGQEKAKQYDALFLETSAKAGHNVKSI 162
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 71/118 (60%), Positives = 98/118 (83%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
+RLQLWDTAGQERFRSL+P+YIRDS +A+VVY I + SF KWI+DV+ ERG+ V++
Sbjct: 58 IRLQLWDTAGQERFRSLVPAYIRDSHIAIVVYAIDSRKSFVDVDKWIEDVKAERGNQVVL 117
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
MLVGNK+DL + R+V+TEEG+ KAK+ + +F+ETSAKAG+NVK + +VA+ LPG+++
Sbjct: 118 MLVGNKSDLEESREVTTEEGQEKAKQYDALFLETSAKAGHNVKSILNKVASELPGLET 175
>gi|297304080|ref|XP_002808583.1| PREDICTED: LOW QUALITY PROTEIN: ras-related protein Rab-41-like
[Macaca mulatta]
Length = 228
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 113/225 (50%), Positives = 131/225 (58%), Gaps = 70/225 (31%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT-- 68
L K KL+FLGE S GKTS+ITRFMY+SF Q +
Sbjct: 29 LCKSKLLFLGEPS------------------------GKTSVITRFMYNSFGCACQVSPS 64
Query: 69 ---IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 125
IDFLSKTMYLED+ V+LQLWDTAGQERF SLIPSYIRDST+AVVVYDITN +SF
Sbjct: 65 PSNCXIDFLSKTMYLEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNISSFK 124
Query: 126 QTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVII 185
+T KW++ VR ERG DV+IML
Sbjct: 125 ETDKWVEHVRAERGDDVVIML--------------------------------------- 145
Query: 186 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNK DL +KRQV+ EEGE K++ LNVMFIETSAK GYNVK++
Sbjct: 146 --VGNKIDLDNKRQVTAEEGEEKSRNLNVMFIETSAKTGYNVKKL 188
Score = 187 bits (475), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 90/124 (72%), Positives = 103/124 (83%), Gaps = 3/124 (2%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+LQLWDTAGQERF SLIPSYIRDST+AVVVYDITN +SF +T KW++ VR ERG DV+I
Sbjct: 84 VQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNISSFKETDKWVEHVRAERGDDVVI 143
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
MLVGNK DL +KRQV+ EEGE K++ LNVMFIETSAK GYNVK+LFRRV +AL ST
Sbjct: 144 MLVGNKIDLDNKRQVTAEEGEEKSRNLNVMFIETSAKTGYNVKKLFRRVVSALL---STR 200
Query: 350 NKPP 353
PP
Sbjct: 201 TLPP 204
>gi|384491008|gb|EIE82204.1| hypothetical protein RO3G_06909 [Rhizopus delemar RA 99-880]
Length = 154
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/117 (76%), Positives = 109/117 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYDI++ ++F T+KWIDDVR ERG++
Sbjct: 6 KTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDISSKSTFLNTTKWIDDVRAERGTEA 65
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
I++LVGNKTDL++KR+V+TEEGE++AKELNVMFIETSAKAG+NVK LFRR+A ALPG
Sbjct: 66 IVVLVGNKTDLNEKREVTTEEGEKRAKELNVMFIETSAKAGHNVKSLFRRIAQALPG 122
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 84/153 (54%), Positives = 106/153 (69%), Gaps = 41/153 (26%)
Query: 78 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE 137
MY+E++TVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYDI++ ++F T+KWIDDVR E
Sbjct: 1 MYVEEKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDISSKSTFLNTTKWIDDVRAE 60
Query: 138 RGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 197
RG++ I++L VGNKTDL++K
Sbjct: 61 RGTEAIVVL-----------------------------------------VGNKTDLNEK 79
Query: 198 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
R+V+TEEGE++AKELNVMFIETSAKAG+NVK +
Sbjct: 80 REVTTEEGEKRAKELNVMFIETSAKAGHNVKSL 112
>gi|115388191|ref|XP_001211601.1| GTP-binding protein ryh1 [Aspergillus terreus NIH2624]
gi|114195685|gb|EAU37385.1| GTP-binding protein ryh1 [Aspergillus terreus NIH2624]
Length = 151
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/124 (75%), Positives = 109/124 (87%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DV
Sbjct: 6 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRGERGNDV 65
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK G+NVKQLFRR+A ALPGM+
Sbjct: 66 IIVLVGNKTDLNDKREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQLFRRIAQALPGMEG 125
Query: 348 TENK 351
N+
Sbjct: 126 EANQ 129
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/153 (58%), Positives = 102/153 (66%), Gaps = 41/153 (26%)
Query: 78 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE 137
MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR E
Sbjct: 1 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRGE 60
Query: 138 RGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 197
RG+DVII+L VGNKTDL+DK
Sbjct: 61 RGNDVIIVL-----------------------------------------VGNKTDLNDK 79
Query: 198 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
R+V+T +GE +AK+ +MFIETSAK G+NVKQ+
Sbjct: 80 REVTTAQGEEEAKKNGLMFIETSAKVGHNVKQL 112
>gi|320036381|gb|EFW18320.1| rab6 [Coccidioides posadasii str. Silveira]
Length = 152
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 92/120 (76%), Positives = 107/120 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KW+DDVR ERG+DV
Sbjct: 6 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWVDDVRGERGNDV 65
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK GYNVKQLFRR+A ALPGM+
Sbjct: 66 IIVLVGNKTDLNDKREVTTAQGEEEAKKNGLMFIETSAKVGYNVKQLFRRIAQALPGMEG 125
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/153 (58%), Positives = 102/153 (66%), Gaps = 41/153 (26%)
Query: 78 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE 137
MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KW+DDVR E
Sbjct: 1 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWVDDVRGE 60
Query: 138 RGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 197
RG+DVII+L VGNKTDL+DK
Sbjct: 61 RGNDVIIVL-----------------------------------------VGNKTDLNDK 79
Query: 198 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
R+V+T +GE +AK+ +MFIETSAK GYNVKQ+
Sbjct: 80 REVTTAQGEEEAKKNGLMFIETSAKVGYNVKQL 112
>gi|119191778|ref|XP_001246495.1| hypothetical protein CIMG_00266 [Coccidioides immitis RS]
Length = 143
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 92/119 (77%), Positives = 107/119 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KW+DDVR ERG+DV
Sbjct: 6 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWVDDVRGERGNDV 65
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II+LVGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK GYNVKQLFRR+A ALPGM+
Sbjct: 66 IIVLVGNKTDLNDKREVTTAQGEEEAKKNGLMFIETSAKVGYNVKQLFRRIAQALPGME 124
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/153 (58%), Positives = 102/153 (66%), Gaps = 41/153 (26%)
Query: 78 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE 137
MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KW+DDVR E
Sbjct: 1 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWVDDVRGE 60
Query: 138 RGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 197
RG+DVII+L VGNKTDL+DK
Sbjct: 61 RGNDVIIVL-----------------------------------------VGNKTDLNDK 79
Query: 198 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
R+V+T +GE +AK+ +MFIETSAK GYNVKQ+
Sbjct: 80 REVTTAQGEEEAKKNGLMFIETSAKVGYNVKQL 112
>gi|150866330|ref|XP_001385886.2| hypothetical protein PICST_61694 [Scheffersomyces stipitis CBS
6054]
gi|149387586|gb|ABN67857.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 224
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 117/230 (50%), Positives = 137/230 (59%), Gaps = 67/230 (29%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
S + D N LRK+K+VFLG+QSVGKTSL ITRFMYD+F
Sbjct: 10 SGTSDKSNILRKYKIVFLGDQSVGKTSL-----------------------ITRFMYDTF 46
Query: 62 DNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
D TY ATIGIDFLSKTMYL+D RT+RLQLWDTAGQERFRSLIPSYIRDS VAV+ YDITN
Sbjct: 47 DETYAATIGIDFLSKTMYLDDNRTIRLQLWDTAGQERFRSLIPSYIRDSHVAVICYDITN 106
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
SF+ KWI DV+ ERG DVII+L
Sbjct: 107 KKSFNNLDKWIKDVKLERGDDVIIVL---------------------------------- 132
Query: 181 SDVIIMLVGNKTDLS-DKRQVSTEEGERKAKEL-NVMFIETSAKAGYNVK 228
VGNK+DL+ DKRQV+ E+ E +++ + FIETS KA +NVK
Sbjct: 133 -------VGNKSDLANDKRQVTLEDVEALHRKVGSKFFIETSTKANHNVK 175
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 79/137 (57%), Positives = 100/137 (72%), Gaps = 12/137 (8%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS VAV+ YDITN SF+ KWI DV+ ERG DV
Sbjct: 69 RTIRLQLWDTAGQERFRSLIPSYIRDSHVAVICYDITNKKSFNNLDKWIKDVKLERGDDV 128
Query: 288 IIMLVGNKTDLS-DKRQVSTEEGERKAKEL-NVMFIETSAKAGYNVKQLFRRVAAALP-- 343
II+LVGNK+DL+ DKRQV+ E+ E +++ + FIETS KA +NVK LF+++A +LP
Sbjct: 129 IIVLVGNKSDLANDKRQVTLEDVEALHRKVGSKFFIETSTKANHNVKLLFKKIAQSLPEF 188
Query: 344 --------GMDSTENKP 352
M++ NKP
Sbjct: 189 NTSVNDELAMENRANKP 205
>gi|154303651|ref|XP_001552232.1| GTP-binding protein [Botryotinia fuckeliana B05.10]
Length = 152
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 92/123 (74%), Positives = 108/123 (87%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+N SF T KW+DDVR ERG+DV
Sbjct: 6 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNRKSFQNTRKWVDDVRGERGNDV 65
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKR+V+T EGE +AK+ N+MFIETSAK G+NVK LFRR+A ALPGM+
Sbjct: 66 IIVLVGNKTDLNDKREVTTSEGEEEAKKNNLMFIETSAKLGHNVKTLFRRIAQALPGMEG 125
Query: 348 TEN 350
+N
Sbjct: 126 ADN 128
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/151 (58%), Positives = 100/151 (66%), Gaps = 41/151 (27%)
Query: 78 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE 137
MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+N SF T KW+DDVR E
Sbjct: 1 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNRKSFQNTRKWVDDVRGE 60
Query: 138 RGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 197
RG+DVII+L VGNKTDL+DK
Sbjct: 61 RGNDVIIVL-----------------------------------------VGNKTDLNDK 79
Query: 198 RQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
R+V+T EGE +AK+ N+MFIETSAK G+NVK
Sbjct: 80 REVTTSEGEEEAKKNNLMFIETSAKLGHNVK 110
>gi|334188628|ref|NP_001190616.1| RAB GTPase homolog H1A [Arabidopsis thaliana]
gi|332010597|gb|AED97980.1| RAB GTPase homolog H1A [Arabidopsis thaliana]
Length = 213
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 113/237 (47%), Positives = 136/237 (57%), Gaps = 74/237 (31%)
Query: 5 GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT 64
GD G + +KLVFLG+Q VGKTS+I T FMY FD +
Sbjct: 2 GDLG---KGYKLVFLGDQGVGKTSII-----------------------TCFMYGKFDTS 35
Query: 65 YQATIGIDFLSKTMYLEDRTVRLQLW-------DTAGQERFRSLIPSYIRDSTVAVVVYD 117
YQATIGIDFLSKT EDRT RLQLW DTAGQERF+SL+PSYIRDS+VAV+VYD
Sbjct: 36 YQATIGIDFLSKTTRYEDRTFRLQLWYKKLSLGDTAGQERFKSLVPSYIRDSSVAVIVYD 95
Query: 118 ITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRT 177
+ + SF TSKWI++VR ERGS VII+L
Sbjct: 96 VASKQSFINTSKWIEEVRAERGSYVIIVL------------------------------- 124
Query: 178 ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
VGNKTDL +KRQVS EEGE KA+E +F+ETSAKAG+N+K + ++
Sbjct: 125 ----------VGNKTDLVNKRQVSIEEGENKAREFGALFMETSAKAGFNIKPLFCKI 171
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 82/138 (59%), Positives = 103/138 (74%), Gaps = 7/138 (5%)
Query: 225 YNVKQVRLQLW-------DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 277
Y + RLQLW DTAGQERF+SL+PSYIRDS+VAV+VYD+ + SF TSKWI+
Sbjct: 51 YEDRTFRLQLWYKKLSLGDTAGQERFKSLVPSYIRDSSVAVIVYDVASKQSFINTSKWIE 110
Query: 278 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR 337
+VR ERGS VII+LVGNKTDL +KRQVS EEGE KA+E +F+ETSAKAG+N+K LF +
Sbjct: 111 EVRAERGSYVIIVLVGNKTDLVNKRQVSIEEGENKAREFGALFMETSAKAGFNIKPLFCK 170
Query: 338 VAAALPGMDSTENKPPED 355
+ +AL G ++ ED
Sbjct: 171 ITSALQGNEAVSWTKQED 188
>gi|340960873|gb|EGS22054.1| putative GTP-binding protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 213
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 93/138 (67%), Positives = 115/138 (83%), Gaps = 8/138 (5%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
L+ M++E + VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF
Sbjct: 58 LHTMYLED--------RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFEN 109
Query: 272 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 331
T KWIDDVR ERG+DVII+LVGNKTDL+DKR+V+T++GE +A+ ++MFIETSAK G+NV
Sbjct: 110 TRKWIDDVRAERGNDVIIVLVGNKTDLADKREVTTQQGEEEARRQDLMFIETSAKLGHNV 169
Query: 332 KQLFRRVAAALPGMDSTE 349
K LF+R+A ALPGM+ T+
Sbjct: 170 KTLFKRIAQALPGMEGTD 187
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 108/220 (49%), Positives = 130/220 (59%), Gaps = 62/220 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
NPL+KFKLVFLGEQS + + Q I T+ I +S+ + T
Sbjct: 13 NPLKKFKLVFLGEQSGMRHCI------------RQDDIGASTNTIAP---NSWQDLAHHT 57
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
+ TMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T
Sbjct: 58 L------HTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFENTR 111
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWIDDVR ERG+DVII+L V
Sbjct: 112 KWIDDVRAERGNDVIIVL-----------------------------------------V 130
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
GNKTDL+DKR+V+T++GE +A+ ++MFIETSAK G+NVK
Sbjct: 131 GNKTDLADKREVTTQQGEEEARRQDLMFIETSAKLGHNVK 170
>gi|242818601|ref|XP_002487150.1| RAS small monomeric GTPase Rab6, putative [Talaromyces stipitatus
ATCC 10500]
gi|218713615|gb|EED13039.1| RAS small monomeric GTPase Rab6, putative [Talaromyces stipitatus
ATCC 10500]
Length = 152
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 91/120 (75%), Positives = 107/120 (89%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KW+DDVR ERG+DV
Sbjct: 6 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTKKWVDDVRGERGNDV 65
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKR+V+T +GE +AK+ +MFIETSAK G+NVKQLFRR+A ALPGM+
Sbjct: 66 IIVLVGNKTDLNDKREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQLFRRIAQALPGMEG 125
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 88/153 (57%), Positives = 102/153 (66%), Gaps = 41/153 (26%)
Query: 78 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE 137
MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KW+DDVR E
Sbjct: 1 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTKKWVDDVRGE 60
Query: 138 RGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 197
RG+DVII+L VGNKTDL+DK
Sbjct: 61 RGNDVIIVL-----------------------------------------VGNKTDLNDK 79
Query: 198 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
R+V+T +GE +AK+ +MFIETSAK G+NVKQ+
Sbjct: 80 REVTTAQGEEEAKKNGLMFIETSAKVGHNVKQL 112
>gi|313241573|emb|CBY33817.1| unnamed protein product [Oikopleura dioica]
Length = 180
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 125/217 (57%), Gaps = 64/217 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L+K+KLVFLGEQ VGKTSL ITRFMYDSFD YQATIG
Sbjct: 10 LKKYKLVFLGEQGVGKTSL-----------------------ITRFMYDSFDQHYQATIG 46
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKT+ ++D TVRLQLWDTAGQERFRSLIPSYIRDS V ++VY++T SF + W
Sbjct: 47 IDFLSKTLQIDDNTVRLQLWDTAGQERFRSLIPSYIRDSNVGIIVYNVTEEKSFSKIDTW 106
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
I DV+ +RG DVII L VGN
Sbjct: 107 IKDVKDQRGEDVIIFL-----------------------------------------VGN 125
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 227
KTDL KR+V E+KA E NV FIETSAK+GYNV
Sbjct: 126 KTDLEAKRKVDISVAEKKAAEHNVHFIETSAKSGYNV 162
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/117 (64%), Positives = 90/117 (76%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
VRLQLWDTAGQERFRSLIPSYIRDS V ++VY++T SF + WI DV+ +RG DVII
Sbjct: 61 VRLQLWDTAGQERFRSLIPSYIRDSNVGIIVYNVTEEKSFSKIDTWIKDVKDQRGEDVII 120
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
LVGNKTDL KR+V E+KA E NV FIETSAK+GYNV LF+R+A A+ G++
Sbjct: 121 FLVGNKTDLEAKRKVDISVAEKKAAEHNVHFIETSAKSGYNVNALFQRIARAITGLN 177
>gi|378732802|gb|EHY59261.1| Ras-like protein Rab-6B [Exophiala dermatitidis NIH/UT8656]
Length = 174
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/173 (59%), Positives = 118/173 (68%), Gaps = 42/173 (24%)
Query: 57 MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY 116
MYDSFD TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVY
Sbjct: 1 MYDSFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 60
Query: 117 DITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVR 176
DI++ +F QT KWIDDVR ERG+DVI++L
Sbjct: 61 DISSRKTFEQTRKWIDDVRGERGNDVIVVL------------------------------ 90
Query: 177 TERGSDVIIMLVGNKTDLSD-KRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDL D KR+V+T++GE +AK +F+ETSAK G+NVK
Sbjct: 91 -----------VGNKTDLGDSKREVTTQQGEEEAKRAGAIFMETSAKLGHNVK 132
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/127 (69%), Positives = 106/127 (83%), Gaps = 1/127 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI++ +F QT KWIDDVR ERG+DV
Sbjct: 27 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISSRKTFEQTRKWIDDVRGERGNDV 86
Query: 288 IIMLVGNKTDLSD-KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
I++LVGNKTDL D KR+V+T++GE +AK +F+ETSAK G+NVK LFRR+A ALPGM+
Sbjct: 87 IVVLVGNKTDLGDSKREVTTQQGEEEAKRAGAIFMETSAKLGHNVKALFRRIAQALPGME 146
Query: 347 STENKPP 353
S P
Sbjct: 147 SEGESQP 153
>gi|340504136|gb|EGR30614.1| ras oncogene family protein, putative [Ichthyophthirius
multifiliis]
Length = 230
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/228 (45%), Positives = 130/228 (57%), Gaps = 64/228 (28%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
+ G PL+K+KLVFLG+Q+VGKTS+I RFM+D+FD
Sbjct: 5 TKGSLATPLQKYKLVFLGDQAVGKTSIIN-----------------------RFMFDTFD 41
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
T+GIDF+SKT+Y EDRT+RLQLWDTAGQERFRSLIPSYIRDS VAVV YD+TN
Sbjct: 42 GKDHPTVGIDFISKTLYYEDRTIRLQLWDTAGQERFRSLIPSYIRDSAVAVVCYDVTNRQ 101
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF +KWI+DVR ER +VII L
Sbjct: 102 SFDNVTKWIEDVRNERRQEVIICL------------------------------------ 125
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTD+ DKRQ+ +G +K+KEL+V + E SA +G N+ Q+
Sbjct: 126 -----VGNKTDMQDKRQIQYADGLQKSKELDVKYFEVSALSGENIPQL 168
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 75/125 (60%), Positives = 95/125 (76%)
Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
Y + +RLQLWDTAGQERFRSLIPSYIRDS VAVV YD+TN SF +KWI+DVR ER
Sbjct: 59 YEDRTIRLQLWDTAGQERFRSLIPSYIRDSAVAVVCYDVTNRQSFDNVTKWIEDVRNERR 118
Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
+VII LVGNKTD+ DKRQ+ +G +K+KEL+V + E SA +G N+ QLF+ +A LPG
Sbjct: 119 QEVIICLVGNKTDMQDKRQIQYADGLQKSKELDVKYFEVSALSGENIPQLFKEIACMLPG 178
Query: 345 MDSTE 349
+ ++
Sbjct: 179 AEISQ 183
>gi|344303734|gb|EGW33983.1| hypothetical protein SPAPADRAFT_59389 [Spathaspora passalidarum
NRRL Y-27907]
Length = 209
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 116/228 (50%), Positives = 135/228 (59%), Gaps = 67/228 (29%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
SS D N LRK+K+VFLG+QSVGKTSL ITRFMYD+FD
Sbjct: 2 SSPDKSNILRKYKIVFLGDQSVGKTSL-----------------------ITRFMYDTFD 38
Query: 63 NTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
TY ATIGIDFLSKTMYLE+ +T+RLQLWDTAGQERFRSLIPSYIRDS VAV+ YDITN
Sbjct: 39 ETYAATIGIDFLSKTMYLEEGKTIRLQLWDTAGQERFRSLIPSYIRDSHVAVICYDITNK 98
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF KWI DV+ ERG DVII+L
Sbjct: 99 KSFLNLDKWIKDVKLERGDDVIIVL----------------------------------- 123
Query: 182 DVIIMLVGNKTDLS-DKRQVSTEEGERKAKEL-NVMFIETSAKAGYNV 227
VGNK+DL+ DKRQVS E+ E+ ++ + FIETS KA +N+
Sbjct: 124 ------VGNKSDLANDKRQVSVEDVEQLHNKIGSKFFIETSTKANHNI 165
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/106 (66%), Positives = 83/106 (78%), Gaps = 2/106 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K +RLQLWDTAGQERFRSLIPSYIRDS VAV+ YDITN SF KWI DV+ ERG DV
Sbjct: 60 KTIRLQLWDTAGQERFRSLIPSYIRDSHVAVICYDITNKKSFLNLDKWIKDVKLERGDDV 119
Query: 288 IIMLVGNKTDLS-DKRQVSTEEGERKAKEL-NVMFIETSAKAGYNV 331
II+LVGNK+DL+ DKRQVS E+ E+ ++ + FIETS KA +N+
Sbjct: 120 IIVLVGNKSDLANDKRQVSVEDVEQLHNKIGSKFFIETSTKANHNI 165
>gi|344231004|gb|EGV62889.1| ras-domain-containing protein [Candida tenuis ATCC 10573]
Length = 260
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/229 (48%), Positives = 133/229 (58%), Gaps = 67/229 (29%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
S+ D N LRK+K+VFLG+Q VGKTSL ITRFMYD+FD
Sbjct: 53 STNDKSNILRKYKIVFLGDQGVGKTSL-----------------------ITRFMYDTFD 89
Query: 63 NTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
Y ATIGIDFLSKTMYLED +T+RLQLWDTAGQERFRSLIPSYIRDS VA++ YDITN
Sbjct: 90 EQYAATIGIDFLSKTMYLEDNKTIRLQLWDTAGQERFRSLIPSYIRDSNVAIICYDITNK 149
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF KWI +V+ ERG DVII++
Sbjct: 150 KSFDNLDKWISEVKLERGEDVIIVI----------------------------------- 174
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELN--VMFIETSAKAGYNVK 228
VGNK+DL++KRQVS EE E K + +++ETS KA +N+K
Sbjct: 175 ------VGNKSDLNNKRQVSAEELETLGKSIENCSIYLETSTKANHNIK 217
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/130 (58%), Positives = 98/130 (75%), Gaps = 5/130 (3%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K +RLQLWDTAGQERFRSLIPSYIRDS VA++ YDITN SF KWI +V+ ERG DV
Sbjct: 111 KTIRLQLWDTAGQERFRSLIPSYIRDSNVAIICYDITNKKSFDNLDKWISEVKLERGEDV 170
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELN--VMFIETSAKAGYNVKQLFRRVAAALPGM 345
II++VGNK+DL++KRQVS EE E K + +++ETS KA +N+K LF+++A +LP
Sbjct: 171 IIVIVGNKSDLNNKRQVSAEELETLGKSIENCSIYLETSTKANHNIKLLFKKIAKSLPEF 230
Query: 346 DS---TENKP 352
+S +NKP
Sbjct: 231 NSDSGAQNKP 240
>gi|116194366|ref|XP_001222995.1| hypothetical protein CHGG_03781 [Chaetomium globosum CBS 148.51]
gi|88179694|gb|EAQ87162.1| hypothetical protein CHGG_03781 [Chaetomium globosum CBS 148.51]
Length = 153
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 90/122 (73%), Positives = 108/122 (88%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DV
Sbjct: 6 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRAERGNDV 65
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKR+V+T++GE +AK N+MF+ETSAK G+NVK LF+R+A ALPGM+
Sbjct: 66 IIVLVGNKTDLNDKREVTTQQGEDEAKRNNLMFVETSAKLGHNVKTLFKRIAQALPGMEG 125
Query: 348 TE 349
+
Sbjct: 126 AD 127
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 88/151 (58%), Positives = 101/151 (66%), Gaps = 41/151 (27%)
Query: 78 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE 137
MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR E
Sbjct: 1 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRAE 60
Query: 138 RGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 197
RG+DVII+L VGNKTDL+DK
Sbjct: 61 RGNDVIIVL-----------------------------------------VGNKTDLNDK 79
Query: 198 RQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
R+V+T++GE +AK N+MF+ETSAK G+NVK
Sbjct: 80 REVTTQQGEDEAKRNNLMFVETSAKLGHNVK 110
>gi|328354607|emb|CCA41004.1| GTP-binding protein YPT6 [Komagataella pastoris CBS 7435]
Length = 250
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 101/185 (54%), Positives = 121/185 (65%), Gaps = 42/185 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTSLITRFMYD+F++ Y AT+GIDFLSKT+YL+D+TVRLQLWDTAGQERFRSL+PSYI
Sbjct: 63 VGKTSLITRFMYDTFNDHYAATVGIDFLSKTLYLDDKTVRLQLWDTAGQERFRSLVPSYI 122
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
RDS VA++VYD T+ +SF KW DDVR ERG +VII
Sbjct: 123 RDSNVAIIVYDTTSKSSFQSVDKWCDDVRNERGENVII---------------------- 160
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGY 225
LV NK DL+D+R +STE+GE+KA L V +FIETS K GY
Sbjct: 161 -------------------CLVANKADLADQRVISTEDGEKKATGLKVDLFIETSTKKGY 201
Query: 226 NVKQV 230
NVK +
Sbjct: 202 NVKNL 206
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/128 (63%), Positives = 97/128 (75%), Gaps = 1/128 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K VRLQLWDTAGQERFRSL+PSYIRDS VA++VYD T+ +SF KW DDVR ERG +V
Sbjct: 99 KTVRLQLWDTAGQERFRSLVPSYIRDSNVAIIVYDTTSKSSFQSVDKWCDDVRNERGENV 158
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPGMD 346
II LV NK DL+D+R +STE+GE+KA L V +FIETS K GYNVK LFR+VA L D
Sbjct: 159 IICLVANKADLADQRVISTEDGEKKATGLKVDLFIETSTKKGYNVKNLFRKVAKTLLEQD 218
Query: 347 STENKPPE 354
+ + P+
Sbjct: 219 GSPGQDPK 226
>gi|326477305|gb|EGE01315.1| rab6 [Trichophyton equinum CBS 127.97]
Length = 203
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 116/229 (50%), Positives = 133/229 (58%), Gaps = 70/229 (30%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
S G + NPL+KFKLVFLGEQSVGKTSL IT FMYDS
Sbjct: 5 SQVGSYSNPLKKFKLVFLGEQSVGKTSL-----------------------ITGFMYDS- 40
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
T + FLS EDRTVRLQLWDTAGQERFRSLIPSYI++S VAVVVYDI+NA
Sbjct: 41 STTRTSNYRNGFLS-----EDRTVRLQLWDTAGQERFRSLIPSYIQNSNVAVVVYDISNA 95
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF T KW+DDVR ERG+DVII L
Sbjct: 96 KSFQNTRKWVDDVRDERGNDVIIAL----------------------------------- 120
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKR+V+TE+GE +AK+ +MFIETSAK G+NVK +
Sbjct: 121 ------VGNKTDLNDKREVTTEQGEEEAKKNGLMFIETSAKLGHNVKNL 163
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/119 (73%), Positives = 105/119 (88%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYI++S VAVVVYDI+NA SF T KW+DDVR ERG+DV
Sbjct: 57 RTVRLQLWDTAGQERFRSLIPSYIQNSNVAVVVYDISNAKSFQNTRKWVDDVRDERGNDV 116
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
II LVGNKTDL+DKR+V+TE+GE +AK+ +MFIETSAK G+NVK LF+++A ALPGM+
Sbjct: 117 IIALVGNKTDLNDKREVTTEQGEEEAKKNGLMFIETSAKLGHNVKNLFKKIAQALPGME 175
>gi|344231005|gb|EGV62890.1| hypothetical protein CANTEDRAFT_115849 [Candida tenuis ATCC 10573]
Length = 209
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 111/229 (48%), Positives = 133/229 (58%), Gaps = 67/229 (29%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
S+ D N LRK+K+VFLG+Q VGKTSL ITRFMYD+FD
Sbjct: 2 STNDKSNILRKYKIVFLGDQGVGKTSL-----------------------ITRFMYDTFD 38
Query: 63 NTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
Y ATIGIDFLSKTMYLED +T+RLQLWDTAGQERFRSLIPSYIRDS VA++ YDITN
Sbjct: 39 EQYAATIGIDFLSKTMYLEDNKTIRLQLWDTAGQERFRSLIPSYIRDSNVAIICYDITNK 98
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF KWI +V+ ERG DVII++
Sbjct: 99 KSFDNLDKWISEVKLERGEDVIIVI----------------------------------- 123
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELN--VMFIETSAKAGYNVK 228
VGNK+DL++KRQVS EE E K + +++ETS KA +N+K
Sbjct: 124 ------VGNKSDLNNKRQVSAEELETLGKSIENCSIYLETSTKANHNIK 166
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/130 (58%), Positives = 98/130 (75%), Gaps = 5/130 (3%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K +RLQLWDTAGQERFRSLIPSYIRDS VA++ YDITN SF KWI +V+ ERG DV
Sbjct: 60 KTIRLQLWDTAGQERFRSLIPSYIRDSNVAIICYDITNKKSFDNLDKWISEVKLERGEDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELN--VMFIETSAKAGYNVKQLFRRVAAALPGM 345
II++VGNK+DL++KRQVS EE E K + +++ETS KA +N+K LF+++A +LP
Sbjct: 120 IIVIVGNKSDLNNKRQVSAEELETLGKSIENCSIYLETSTKANHNIKLLFKKIAKSLPEF 179
Query: 346 DS---TENKP 352
+S +NKP
Sbjct: 180 NSDSGAQNKP 189
>gi|320580277|gb|EFW94500.1| GTPase, Ras-like GTP binding protein [Ogataea parapolymorpha DL-1]
Length = 200
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 110/221 (49%), Positives = 129/221 (58%), Gaps = 66/221 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K+K+VFLG+Q VGKTSL ITRFMYD+FD Y ATIG
Sbjct: 2 LTKYKIVFLGDQGVGKTSL-----------------------ITRFMYDTFDAHYAATIG 38
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKTMYL+D+T+RLQLWDTAGQERFRSLIPSYIRDS VA++VYDITN SF SKW
Sbjct: 39 IDFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSYIRDSNVAIIVYDITNKESFQNVSKW 98
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
D V+ ERGS+V+I+L VGN
Sbjct: 99 FDYVKQERGSNVLIIL-----------------------------------------VGN 117
Query: 191 KTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQV 230
K+DL +K + EEGE K+L FIETS+K GYNVK +
Sbjct: 118 KSDLENKI-IPNEEGESMCKKLGCNFFIETSSKNGYNVKNL 157
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/119 (64%), Positives = 92/119 (77%), Gaps = 2/119 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K +RLQLWDTAGQERFRSLIPSYIRDS VA++VYDITN SF SKW D V+ ERGS+V
Sbjct: 51 KTIRLQLWDTAGQERFRSLIPSYIRDSNVAIIVYDITNKESFQNVSKWFDYVKQERGSNV 110
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPGM 345
+I+LVGNK+DL +K + EEGE K+L FIETS+K GYNVK LF++VA LP +
Sbjct: 111 LIILVGNKSDLENKI-IPNEEGESMCKKLGCNFFIETSSKNGYNVKNLFKKVAKLLPEL 168
>gi|407920188|gb|EKG13405.1| Ras GTPase [Macrophomina phaseolina MS6]
Length = 152
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 91/126 (72%), Positives = 108/126 (85%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+N SF T KW+DDVR ERG+DV
Sbjct: 6 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNRKSFENTRKWVDDVRGERGNDV 65
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKR+V+T +GE +AK+ N+MFIETSAK G+NVK LFRR+A ALPGM+
Sbjct: 66 IIVLVGNKTDLNDKREVTTAQGEEEAKKNNLMFIETSAKLGHNVKTLFRRIAQALPGMEG 125
Query: 348 TENKPP 353
+ P
Sbjct: 126 ENQQNP 131
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 87/151 (57%), Positives = 100/151 (66%), Gaps = 41/151 (27%)
Query: 78 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE 137
MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+N SF T KW+DDVR E
Sbjct: 1 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNRKSFENTRKWVDDVRGE 60
Query: 138 RGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 197
RG+DVII+L VGNKTDL+DK
Sbjct: 61 RGNDVIIVL-----------------------------------------VGNKTDLNDK 79
Query: 198 RQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
R+V+T +GE +AK+ N+MFIETSAK G+NVK
Sbjct: 80 REVTTAQGEEEAKKNNLMFIETSAKLGHNVK 110
>gi|241958896|ref|XP_002422167.1| GTP-binding protein, putative [Candida dubliniensis CD36]
gi|223645512|emb|CAX40171.1| GTP-binding protein, putative [Candida dubliniensis CD36]
Length = 219
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 116/228 (50%), Positives = 134/228 (58%), Gaps = 67/228 (29%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
S D N L+K+K+VFLG+QSVGKTSL ITRFMYD+FD
Sbjct: 2 SSDKSNLLKKYKIVFLGDQSVGKTSL-----------------------ITRFMYDTFDE 38
Query: 64 TYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
TY ATIGIDFLSKTMYLE+ +T+RLQLWDTAGQERFRSLIPSYIRDS VAV+ YDITN
Sbjct: 39 TYAATIGIDFLSKTMYLEEGKTIRLQLWDTAGQERFRSLIPSYIRDSHVAVICYDITNKK 98
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF KWI DV+ ERG DVII+L
Sbjct: 99 SFDNLDKWIKDVKLERGDDVIIVL------------------------------------ 122
Query: 183 VIIMLVGNKTDL-SDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVK 228
VGNK+DL SDKRQVS ++ E+ ++ FIETS KA +NVK
Sbjct: 123 -----VGNKSDLASDKRQVSLDDVEQLQIKIGAKFFIETSTKANHNVK 165
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/125 (62%), Positives = 94/125 (75%), Gaps = 2/125 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K +RLQLWDTAGQERFRSLIPSYIRDS VAV+ YDITN SF KWI DV+ ERG DV
Sbjct: 59 KTIRLQLWDTAGQERFRSLIPSYIRDSHVAVICYDITNKKSFDNLDKWIKDVKLERGDDV 118
Query: 288 IIMLVGNKTDL-SDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPGM 345
II+LVGNK+DL SDKRQVS ++ E+ ++ FIETS KA +NVK LF+++A +LP
Sbjct: 119 IIVLVGNKSDLASDKRQVSLDDVEQLQIKIGAKFFIETSTKANHNVKLLFKKIAQSLPDF 178
Query: 346 DSTEN 350
+ N
Sbjct: 179 NQESN 183
>gi|255721801|ref|XP_002545835.1| GTP-binding protein ryh1 [Candida tropicalis MYA-3404]
gi|240136324|gb|EER35877.1| GTP-binding protein ryh1 [Candida tropicalis MYA-3404]
Length = 215
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 116/228 (50%), Positives = 133/228 (58%), Gaps = 67/228 (29%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
S D N L+K+K+VFLG+QSVGKTSL ITRFMYD+FD
Sbjct: 2 SSDKSNLLKKYKIVFLGDQSVGKTSL-----------------------ITRFMYDTFDE 38
Query: 64 TYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
TY ATIGIDFLSKTMYLE+ +T+RLQLWDTAGQERFRSLIPSYIRDS VAV+ YDITN
Sbjct: 39 TYAATIGIDFLSKTMYLEEGKTIRLQLWDTAGQERFRSLIPSYIRDSHVAVICYDITNKK 98
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF KWI DV+ ERG DVII+L
Sbjct: 99 SFDNLDKWIKDVKLERGDDVIIVL------------------------------------ 122
Query: 183 VIIMLVGNKTDLS-DKRQVSTEEGERKAKELNV-MFIETSAKAGYNVK 228
VGNK+DL+ DKRQVS E+ E ++ FIETS KA +NVK
Sbjct: 123 -----VGNKSDLATDKRQVSLEDVEILQNKIGARFFIETSTKANHNVK 165
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 79/125 (63%), Positives = 94/125 (75%), Gaps = 2/125 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K +RLQLWDTAGQERFRSLIPSYIRDS VAV+ YDITN SF KWI DV+ ERG DV
Sbjct: 59 KTIRLQLWDTAGQERFRSLIPSYIRDSHVAVICYDITNKKSFDNLDKWIKDVKLERGDDV 118
Query: 288 IIMLVGNKTDLS-DKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPGM 345
II+LVGNK+DL+ DKRQVS E+ E ++ FIETS KA +NVK LF+++A +LP
Sbjct: 119 IIVLVGNKSDLATDKRQVSLEDVEILQNKIGARFFIETSTKANHNVKLLFKKIAQSLPEF 178
Query: 346 DSTEN 350
+ EN
Sbjct: 179 NQDEN 183
>gi|399219055|emb|CCF75942.1| unnamed protein product [Babesia microti strain RI]
Length = 220
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 138/234 (58%), Gaps = 68/234 (29%)
Query: 1 MSSSGD----FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRF 56
MS++G+ G ++K+K+V LGEQS GKTS++T RF
Sbjct: 1 MSNAGNDGYNLGFGIKKYKIVLLGEQSSGKTSIVT-----------------------RF 37
Query: 57 MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY 116
MYD+F++TYQATIGIDFLSKT+ ++ +RLQLWDTAGQERFRSL+PSYIRDS+ AV+ Y
Sbjct: 38 MYDTFESTYQATIGIDFLSKTITVKKTQLRLQLWDTAGQERFRSLMPSYIRDSSAAVITY 97
Query: 117 DITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVR 176
DITN SF T+KWIDDVR ER ++ I++L
Sbjct: 98 DITNRKSFENTTKWIDDVRRERANNAILIL------------------------------ 127
Query: 177 TERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL DKRQVS EEGE AK+ ++F ETSAK G N+ ++
Sbjct: 128 -----------VGNKTDLVDKRQVSYEEGEEHAKKYGMIFQETSAKEGTNISKI 170
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/126 (61%), Positives = 96/126 (76%)
Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI 288
Q+RLQLWDTAGQERFRSL+PSYIRDS+ AV+ YDITN SF T+KWIDDVR ER ++ I
Sbjct: 65 QLRLQLWDTAGQERFRSLMPSYIRDSSAAVITYDITNRKSFENTTKWIDDVRRERANNAI 124
Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDST 348
++LVGNKTDL DKRQVS EEGE AK+ ++F ETSAK G N+ ++F VA +L ++
Sbjct: 125 LILVGNKTDLVDKRQVSYEEGEEHAKKYGMIFQETSAKEGTNISKIFFDVAESLLDFNAG 184
Query: 349 ENKPPE 354
PE
Sbjct: 185 SVTIPE 190
>gi|67901230|ref|XP_680871.1| hypothetical protein AN7602.2 [Aspergillus nidulans FGSC A4]
gi|40742992|gb|EAA62182.1| hypothetical protein AN7602.2 [Aspergillus nidulans FGSC A4]
Length = 169
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 92/122 (75%), Positives = 107/122 (87%)
Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
Y + VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG
Sbjct: 45 YYNRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRGERG 104
Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
+DVII+LVGNKTDLSDKR+V+T +GE +AK+ +MFIETSAK G+NVKQLFRR+A ALP
Sbjct: 105 NDVIIVLVGNKTDLSDKREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQLFRRIAQALPD 164
Query: 345 MD 346
++
Sbjct: 165 LN 166
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 106/229 (46%), Positives = 125/229 (54%), Gaps = 79/229 (34%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
S++G + NPL+KFKLVFLGEQS T
Sbjct: 5 STAGSYSNPLKKFKLVFLGEQSGAHTL--------------------------------- 31
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
+ + G FL M +RTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA
Sbjct: 32 --SLHSQTGARFL---MLYYNRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDISNA 86
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF T KWIDDVR ERG+DVII+L
Sbjct: 87 KSFQNTRKWIDDVRGERGNDVIIVL----------------------------------- 111
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKR+V+T +GE +AK+ +MFIETSAK G+NVKQ+
Sbjct: 112 ------VGNKTDLSDKREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQL 154
>gi|68485957|ref|XP_713097.1| likely rab family GTP-binding protein [Candida albicans SC5314]
gi|46434574|gb|EAK93979.1| likely rab family GTP-binding protein [Candida albicans SC5314]
Length = 224
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 116/228 (50%), Positives = 133/228 (58%), Gaps = 67/228 (29%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
S D N L+K+K+VFLG+QSVGKTSL ITRFMYD+FD
Sbjct: 2 SSDKSNLLKKYKIVFLGDQSVGKTSL-----------------------ITRFMYDTFDE 38
Query: 64 TYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
TY ATIGIDFLSKTMYLE+ +T+RLQLWDTAGQERFRSLIPSYIRDS VAV+ YDITN
Sbjct: 39 TYAATIGIDFLSKTMYLEEGKTIRLQLWDTAGQERFRSLIPSYIRDSHVAVICYDITNKK 98
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF KWI DV+ ERG DVII+L
Sbjct: 99 SFDNLDKWIKDVKLERGDDVIIVL------------------------------------ 122
Query: 183 VIIMLVGNKTDL-SDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVK 228
VGNK+DL SDKRQVS ++ E ++ FIETS KA +NVK
Sbjct: 123 -----VGNKSDLASDKRQVSLDDVENLQIKIGAKFFIETSTKANHNVK 165
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/125 (62%), Positives = 93/125 (74%), Gaps = 2/125 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K +RLQLWDTAGQERFRSLIPSYIRDS VAV+ YDITN SF KWI DV+ ERG DV
Sbjct: 59 KTIRLQLWDTAGQERFRSLIPSYIRDSHVAVICYDITNKKSFDNLDKWIKDVKLERGDDV 118
Query: 288 IIMLVGNKTDL-SDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPGM 345
II+LVGNK+DL SDKRQVS ++ E ++ FIETS KA +NVK LF+++A +LP
Sbjct: 119 IIVLVGNKSDLASDKRQVSLDDVENLQIKIGAKFFIETSTKANHNVKLLFKKIAQSLPDF 178
Query: 346 DSTEN 350
+ N
Sbjct: 179 NQDSN 183
>gi|68486004|ref|XP_713074.1| likely rab family GTP-binding protein [Candida albicans SC5314]
gi|46434549|gb|EAK93955.1| likely rab family GTP-binding protein [Candida albicans SC5314]
Length = 219
Score = 193 bits (491), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 116/228 (50%), Positives = 133/228 (58%), Gaps = 67/228 (29%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
S D N L+K+K+VFLG+QSVGKTSL ITRFMYD+FD
Sbjct: 2 SSDKSNLLKKYKIVFLGDQSVGKTSL-----------------------ITRFMYDTFDE 38
Query: 64 TYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
TY ATIGIDFLSKTMYLE+ +T+RLQLWDTAGQERFRSLIPSYIRDS VAV+ YDITN
Sbjct: 39 TYAATIGIDFLSKTMYLEEGKTIRLQLWDTAGQERFRSLIPSYIRDSHVAVICYDITNKK 98
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF KWI DV+ ERG DVII+L
Sbjct: 99 SFDNLDKWIKDVKLERGDDVIIVL------------------------------------ 122
Query: 183 VIIMLVGNKTDL-SDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVK 228
VGNK+DL SDKRQVS ++ E ++ FIETS KA +NVK
Sbjct: 123 -----VGNKSDLASDKRQVSLDDVENLQIKIGAKFFIETSTKANHNVK 165
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 77/118 (65%), Positives = 91/118 (77%), Gaps = 2/118 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K +RLQLWDTAGQERFRSLIPSYIRDS VAV+ YDITN SF KWI DV+ ERG DV
Sbjct: 59 KTIRLQLWDTAGQERFRSLIPSYIRDSHVAVICYDITNKKSFDNLDKWIKDVKLERGDDV 118
Query: 288 IIMLVGNKTDL-SDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALP 343
II+LVGNK+DL SDKRQVS ++ E ++ FIETS KA +NVK LF+++A +LP
Sbjct: 119 IIVLVGNKSDLASDKRQVSLDDVENLQIKIGAKFFIETSTKANHNVKLLFKKIAQSLP 176
>gi|238880071|gb|EEQ43709.1| GTP-binding protein ryh1 [Candida albicans WO-1]
Length = 218
Score = 193 bits (491), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 116/228 (50%), Positives = 133/228 (58%), Gaps = 67/228 (29%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
S D N L+K+K+VFLG+QSVGKTSL ITRFMYD+FD
Sbjct: 2 SSDKSNLLKKYKIVFLGDQSVGKTSL-----------------------ITRFMYDTFDE 38
Query: 64 TYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
TY ATIGIDFLSKTMYLE+ +T+RLQLWDTAGQERFRSLIPSYIRDS VAV+ YDITN
Sbjct: 39 TYAATIGIDFLSKTMYLEEGKTIRLQLWDTAGQERFRSLIPSYIRDSHVAVICYDITNKK 98
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF KWI DV+ ERG DVII+L
Sbjct: 99 SFDNLDKWIKDVKLERGDDVIIVL------------------------------------ 122
Query: 183 VIIMLVGNKTDL-SDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVK 228
VGNK+DL SDKRQVS ++ E ++ FIETS KA +NVK
Sbjct: 123 -----VGNKSDLASDKRQVSLDDVENLQIKIGAKFFIETSTKANHNVK 165
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 77/118 (65%), Positives = 91/118 (77%), Gaps = 2/118 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K +RLQLWDTAGQERFRSLIPSYIRDS VAV+ YDITN SF KWI DV+ ERG DV
Sbjct: 59 KTIRLQLWDTAGQERFRSLIPSYIRDSHVAVICYDITNKKSFDNLDKWIKDVKLERGDDV 118
Query: 288 IIMLVGNKTDL-SDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALP 343
II+LVGNK+DL SDKRQVS ++ E ++ FIETS KA +NVK LF+++A +LP
Sbjct: 119 IIVLVGNKSDLASDKRQVSLDDVENLQIKIGAKFFIETSTKANHNVKLLFKKIAQSLP 176
>gi|302665614|ref|XP_003024416.1| hypothetical protein TRV_01379 [Trichophyton verrucosum HKI 0517]
gi|291188469|gb|EFE43805.1| hypothetical protein TRV_01379 [Trichophyton verrucosum HKI 0517]
Length = 176
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/184 (57%), Positives = 119/184 (64%), Gaps = 53/184 (28%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTSLITRFMYDSFDNTYQATIGIDFLSK LWDTAGQERFRSLIPSYI
Sbjct: 16 VGKTSLITRFMYDSFDNTYQATIGIDFLSK------------LWDTAGQERFRSLIPSYI 63
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
++S VAVVVYDI+NA SF T KW+DDVR ERG+DVII L
Sbjct: 64 QNSNVAVVVYDISNAKSFQNTRKWVDDVRDERGNDVIIAL-------------------- 103
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
VGNKTDL+DKR+V+TE+GE +AK+ +MFIETSAK G+N
Sbjct: 104 ---------------------VGNKTDLNDKREVTTEQGEEEAKKNGLMFIETSAKLGHN 142
Query: 227 VKQV 230
VK +
Sbjct: 143 VKNL 146
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 83/114 (72%), Positives = 101/114 (88%)
Query: 233 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLV 292
+LWDTAGQERFRSLIPSYI++S VAVVVYDI+NA SF T KW+DDVR ERG+DVII LV
Sbjct: 45 KLWDTAGQERFRSLIPSYIQNSNVAVVVYDISNAKSFQNTRKWVDDVRDERGNDVIIALV 104
Query: 293 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
GNKTDL+DKR+V+TE+GE +AK+ +MFIETSAK G+NVK LF+++A ALPGM+
Sbjct: 105 GNKTDLNDKREVTTEQGEEEAKKNGLMFIETSAKLGHNVKNLFKKIAQALPGME 158
>gi|323308000|gb|EGA61255.1| Ypt6p [Saccharomyces cerevisiae FostersO]
Length = 185
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/226 (47%), Positives = 132/226 (58%), Gaps = 53/226 (23%)
Query: 57 MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY 116
MYD+FD+ YQATIGIDFLSKTMYL+D+T+RLQLWDTAGQERFRSLIPSYIRDS VA++VY
Sbjct: 1 MYDTFDDHYQATIGIDFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSYIRDSRVAIIVY 60
Query: 117 DITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVR 176
DIT SF KWI+DV+ ERG +
Sbjct: 61 DITKRKSFEYIDKWIEDVKNERGDE----------------------------------- 85
Query: 177 TERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQVRLQLW 235
+VI+ +VGNK+DLSD+RQ+STEEGE+KAK L +F+ETS KAGYNVK +
Sbjct: 86 -----NVIVCIVGNKSDLSDERQISTEEGEKKAKLLGAKIFMETSTKAGYNVKAL----- 135
Query: 236 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT 281
F+ + S D NANS +Q + D+ T
Sbjct: 136 -------FKKIAKSLPEFQNSESTPLDSENANSANQNKPGVIDIST 174
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 82/127 (64%), Positives = 103/127 (81%), Gaps = 2/127 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SD 286
K +RLQLWDTAGQERFRSLIPSYIRDS VA++VYDIT SF KWI+DV+ ERG +
Sbjct: 27 KTIRLQLWDTAGQERFRSLIPSYIRDSRVAIIVYDITKRKSFEYIDKWIEDVKNERGDEN 86
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPGM 345
VI+ +VGNK+DLSD+RQ+STEEGE+KAK L +F+ETS KAGYNVK LF+++A +LP
Sbjct: 87 VIVCIVGNKSDLSDERQISTEEGEKKAKLLGAKIFMETSTKAGYNVKALFKKIAKSLPEF 146
Query: 346 DSTENKP 352
++E+ P
Sbjct: 147 QNSESTP 153
>gi|354545927|emb|CCE42656.1| hypothetical protein CPAR2_202990 [Candida parapsilosis]
Length = 215
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 116/228 (50%), Positives = 133/228 (58%), Gaps = 67/228 (29%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
S D N L+K+K+VFLG+QSVGKTSL ITRFMYD+FD
Sbjct: 2 SSDKTNILKKYKIVFLGDQSVGKTSL-----------------------ITRFMYDTFDE 38
Query: 64 TYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
TY TIGIDFLSKTMYLE+ +TVRLQLWDTAGQERFRSLIPSYIRDS VAV+ YDITN
Sbjct: 39 TYATTIGIDFLSKTMYLEEGKTVRLQLWDTAGQERFRSLIPSYIRDSHVAVICYDITNKK 98
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF KWI DV+ ERG DV+I+L
Sbjct: 99 SFLNLDKWIKDVKVERGDDVVIVL------------------------------------ 122
Query: 183 VIIMLVGNKTDL-SDKRQVSTEEGERKAKEL-NVMFIETSAKAGYNVK 228
VGNK+DL S KRQVS EE E+ ++ + FIETS KA +NVK
Sbjct: 123 -----VGNKSDLASTKRQVSVEEVEQLHNKIGSKFFIETSTKANHNVK 165
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/125 (64%), Positives = 96/125 (76%), Gaps = 2/125 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K VRLQLWDTAGQERFRSLIPSYIRDS VAV+ YDITN SF KWI DV+ ERG DV
Sbjct: 59 KTVRLQLWDTAGQERFRSLIPSYIRDSHVAVICYDITNKKSFLNLDKWIKDVKVERGDDV 118
Query: 288 IIMLVGNKTDL-SDKRQVSTEEGERKAKEL-NVMFIETSAKAGYNVKQLFRRVAAALPGM 345
+I+LVGNK+DL S KRQVS EE E+ ++ + FIETS KA +NVK LF+++A +LP
Sbjct: 119 VIVLVGNKSDLASTKRQVSVEEVEQLHNKIGSKFFIETSTKANHNVKLLFKKIAQSLPDF 178
Query: 346 DSTEN 350
++ EN
Sbjct: 179 NNDEN 183
>gi|323303807|gb|EGA57590.1| Ypt6p [Saccharomyces cerevisiae FostersB]
gi|323332365|gb|EGA73774.1| Ypt6p [Saccharomyces cerevisiae AWRI796]
gi|323336508|gb|EGA77775.1| Ypt6p [Saccharomyces cerevisiae Vin13]
gi|323347457|gb|EGA81728.1| Ypt6p [Saccharomyces cerevisiae Lalvin QA23]
gi|365764092|gb|EHN05617.1| Ypt6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 185
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/226 (47%), Positives = 132/226 (58%), Gaps = 53/226 (23%)
Query: 57 MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY 116
MYD+FD+ YQATIGIDFLSKTMYL+D+T+RLQLWDTAGQERFRSLIPSYIRDS VA++VY
Sbjct: 1 MYDTFDDHYQATIGIDFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSYIRDSRVAIIVY 60
Query: 117 DITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVR 176
DIT SF KWI+DV+ ERG +
Sbjct: 61 DITKRKSFEYIDKWIEDVKNERGDE----------------------------------- 85
Query: 177 TERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQVRLQLW 235
+VI+ +VGNK+DLSD+RQ+STEEGE+KAK L +F+ETS KAGYNVK +
Sbjct: 86 -----NVILCIVGNKSDLSDERQISTEEGEKKAKLLGAKIFMETSTKAGYNVKAL----- 135
Query: 236 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT 281
F+ + S D NANS +Q + D+ T
Sbjct: 136 -------FKKIAKSLPEFQNSESTPLDSENANSANQNKPGVIDIST 174
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/127 (64%), Positives = 103/127 (81%), Gaps = 2/127 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SD 286
K +RLQLWDTAGQERFRSLIPSYIRDS VA++VYDIT SF KWI+DV+ ERG +
Sbjct: 27 KTIRLQLWDTAGQERFRSLIPSYIRDSRVAIIVYDITKRKSFEYIDKWIEDVKNERGDEN 86
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPGM 345
VI+ +VGNK+DLSD+RQ+STEEGE+KAK L +F+ETS KAGYNVK LF+++A +LP
Sbjct: 87 VILCIVGNKSDLSDERQISTEEGEKKAKLLGAKIFMETSTKAGYNVKALFKKIAKSLPEF 146
Query: 346 DSTENKP 352
++E+ P
Sbjct: 147 QNSESTP 153
>gi|149239262|ref|XP_001525507.1| GTP-binding protein ryh1 [Lodderomyces elongisporus NRRL YB-4239]
gi|146451000|gb|EDK45256.1| GTP-binding protein ryh1 [Lodderomyces elongisporus NRRL YB-4239]
Length = 220
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 116/228 (50%), Positives = 133/228 (58%), Gaps = 67/228 (29%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
S D N L+K+K+VFLG+QSVGKTSL ITRFMYD+FD
Sbjct: 2 SSDRTNILKKYKIVFLGDQSVGKTSL-----------------------ITRFMYDTFDE 38
Query: 64 TYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
TY TIGIDFLSKTMYLED +T+RLQLWDTAGQERFRSLIPSYIRDS VAV+ YDITN
Sbjct: 39 TYATTIGIDFLSKTMYLEDGKTIRLQLWDTAGQERFRSLIPSYIRDSHVAVICYDITNKK 98
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF +KWI DV+ ERG DVI++L
Sbjct: 99 SFTNLNKWIKDVKLERGDDVIMVL------------------------------------ 122
Query: 183 VIIMLVGNKTDLS-DKRQVSTEEGER-KAKELNVMFIETSAKAGYNVK 228
VGNK DL+ DKRQVS E+ E+ K + FIETS KA +NVK
Sbjct: 123 -----VGNKLDLANDKRQVSLEDVEQLHNKTGSKFFIETSTKANHNVK 165
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/122 (63%), Positives = 94/122 (77%), Gaps = 2/122 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K +RLQLWDTAGQERFRSLIPSYIRDS VAV+ YDITN SF +KWI DV+ ERG DV
Sbjct: 59 KTIRLQLWDTAGQERFRSLIPSYIRDSHVAVICYDITNKKSFTNLNKWIKDVKLERGDDV 118
Query: 288 IIMLVGNKTDLS-DKRQVSTEEGER-KAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
I++LVGNK DL+ DKRQVS E+ E+ K + FIETS KA +NVK LF+++A +LP
Sbjct: 119 IMVLVGNKLDLANDKRQVSLEDVEQLHNKTGSKFFIETSTKANHNVKLLFKKIAQSLPDF 178
Query: 346 DS 347
++
Sbjct: 179 NN 180
>gi|448526176|ref|XP_003869288.1| Ypt6 protein [Candida orthopsilosis Co 90-125]
gi|380353641|emb|CCG23152.1| Ypt6 protein [Candida orthopsilosis]
Length = 215
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 114/228 (50%), Positives = 133/228 (58%), Gaps = 67/228 (29%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
+ D N L+K+K+VFLG+QSVGKTSL ITRFMYD+FD
Sbjct: 2 NSDKTNILKKYKIVFLGDQSVGKTSL-----------------------ITRFMYDTFDE 38
Query: 64 TYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
TY TIGIDFLSKTMYLE+ +TVRLQLWDTAGQERFRSLIPSYIRDS VAV+ YDITN
Sbjct: 39 TYATTIGIDFLSKTMYLEEGKTVRLQLWDTAGQERFRSLIPSYIRDSHVAVICYDITNKK 98
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF KWI DV+ ERG DV+I+L
Sbjct: 99 SFLNLDKWIKDVKVERGDDVVIVL------------------------------------ 122
Query: 183 VIIMLVGNKTDLSD-KRQVSTEEGERKAKELNV-MFIETSAKAGYNVK 228
VGNK+DL++ KRQVS EE E+ ++ FIETS KA +NVK
Sbjct: 123 -----VGNKSDLANTKRQVSVEEVEQLHNKIGSNFFIETSTKANHNVK 165
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 78/130 (60%), Positives = 99/130 (76%), Gaps = 2/130 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K VRLQLWDTAGQERFRSLIPSYIRDS VAV+ YDITN SF KWI DV+ ERG DV
Sbjct: 59 KTVRLQLWDTAGQERFRSLIPSYIRDSHVAVICYDITNKKSFLNLDKWIKDVKVERGDDV 118
Query: 288 IIMLVGNKTDLSD-KRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPGM 345
+I+LVGNK+DL++ KRQVS EE E+ ++ FIETS KA +NVK LF+++A +LP
Sbjct: 119 VIVLVGNKSDLANTKRQVSVEEVEQLHNKIGSNFFIETSTKANHNVKLLFKKIAQSLPDF 178
Query: 346 DSTENKPPED 355
++ E++ ++
Sbjct: 179 NNDEDEENQE 188
>gi|55733645|emb|CAH93499.1| hypothetical protein [Pongo abelii]
Length = 129
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/107 (83%), Positives = 99/107 (92%)
Query: 248 PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE 307
PSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDVIIMLVGNKTDL+DKRQ++ E
Sbjct: 1 PSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIE 60
Query: 308 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTENKPPE 354
EGE++AKEL+VMFIETSAK GYNVKQLFRRVA+ALPGM++ + K E
Sbjct: 61 EGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKE 107
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 76/128 (59%), Positives = 83/128 (64%), Gaps = 41/128 (32%)
Query: 103 PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHA 162
PSYIRDSTVAVVVYDITN NS
Sbjct: 1 PSYIRDSTVAVVVYDITNLNS--------------------------------------- 21
Query: 163 NSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
F QTSKWIDDVRTERGSDVIIMLVGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK
Sbjct: 22 --FQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAK 79
Query: 223 AGYNVKQV 230
GYNVKQ+
Sbjct: 80 TGYNVKQL 87
>gi|145534476|ref|XP_001452982.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74834215|emb|CAI44484.1| rab_A75 [Paramecium tetraurelia]
gi|124420682|emb|CAK85585.1| unnamed protein product [Paramecium tetraurelia]
Length = 215
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 114/259 (44%), Positives = 137/259 (52%), Gaps = 74/259 (28%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
+ G PL K+KLVFLG+QSVGKTS+I RFM+D+FD
Sbjct: 4 TKGSMVAPLSKYKLVFLGDQSVGKTSIIN-----------------------RFMFDTFD 40
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
T+GIDF+SKT+Y EDRT+RLQLWDTAGQERFRSLIPSYIRDS VAVV YD+
Sbjct: 41 GKDHPTVGIDFISKTLYYEDRTIRLQLWDTAGQERFRSLIPSYIRDSAVAVVCYDV---- 96
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF +KWI+DVR ERG+D
Sbjct: 97 -------------------------------------EVKQSFDSVAKWIEDVRLERGND 119
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV----KQVRLQLWDTA 238
VII LV NK DL + R VSTE+G AKE + FIE SAK+G NV KQ+ L T
Sbjct: 120 VIIFLVANKIDL-ENRVVSTEQGAALAKEQDAHFIEVSAKSGSNVELLFKQIAATLPGTE 178
Query: 239 GQERFRSLI-----PSYIR 252
+ S++ PS I+
Sbjct: 179 TSQMVNSVVNQANQPSNIK 197
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 77/125 (61%), Positives = 95/125 (76%), Gaps = 1/125 (0%)
Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
Y + +RLQLWDTAGQERFRSLIPSYIRDS VAVV YD+ SF +KWI+DVR ERG
Sbjct: 58 YEDRTIRLQLWDTAGQERFRSLIPSYIRDSAVAVVCYDVEVKQSFDSVAKWIEDVRLERG 117
Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
+DVII LV NK DL + R VSTE+G AKE + FIE SAK+G NV+ LF+++AA LPG
Sbjct: 118 NDVIIFLVANKIDL-ENRVVSTEQGAALAKEQDAHFIEVSAKSGSNVELLFKQIAATLPG 176
Query: 345 MDSTE 349
++++
Sbjct: 177 TETSQ 181
>gi|409045798|gb|EKM55278.1| hypothetical protein PHACADRAFT_184090 [Phanerochaete carnosa
HHB-10118-sp]
Length = 218
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/155 (63%), Positives = 116/155 (74%), Gaps = 24/155 (15%)
Query: 4 SGDFGNP-LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
+ DF +P L++ K+V LG+QSVGKTSLITR + SL FMYD+FD
Sbjct: 8 TADFSSPPLKRSKIVLLGDQSVGKTSLITRRV---------------VSLRLTFMYDTFD 52
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT--- 119
NTYQATIGIDFLSK MYLEDRTVRLQLWDTAGQER+RSLIPSYIRD +VA+VV+DIT
Sbjct: 53 NTYQATIGIDFLSKAMYLEDRTVRLQLWDTAGQERYRSLIPSYIRDCSVAIVVFDITTFI 112
Query: 120 -----NANSFHQTSKWIDDVRTERGSDVIIMLVGS 149
+ SF TSKWIDDVR+ERG+DVI++LVG+
Sbjct: 113 DIVFVDRQSFLSTSKWIDDVRSERGNDVIVVLVGN 147
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/83 (69%), Positives = 68/83 (81%), Gaps = 8/83 (9%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT--------NANSFHQTSKWIDDV 279
+ VRLQLWDTAGQER+RSLIPSYIRD +VA+VV+DIT + SF TSKWIDDV
Sbjct: 73 RTVRLQLWDTAGQERYRSLIPSYIRDCSVAIVVFDITTFIDIVFVDRQSFLSTSKWIDDV 132
Query: 280 RTERGSDVIIMLVGNKTDLSDKR 302
R+ERG+DVI++LVGNK DLSDKR
Sbjct: 133 RSERGNDVIVVLVGNKADLSDKR 155
>gi|68063329|ref|XP_673670.1| rab6 [Plasmodium berghei strain ANKA]
gi|56491691|emb|CAI01585.1| rab6, putative [Plasmodium berghei]
Length = 176
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 96/172 (55%), Positives = 112/172 (65%), Gaps = 41/172 (23%)
Query: 57 MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY 116
MYD+FDN YQ+TIGIDFLSKT+YL++ VRLQLWDTAGQERFRSLIPSYIRDS A+VVY
Sbjct: 1 MYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVY 60
Query: 117 DITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVR 176
DITN SF T+KWI D+ ERG DVII+L
Sbjct: 61 DITNRQSFENTTKWIQDILNERGKDVIIVL------------------------------ 90
Query: 177 TERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDL+D R+V+ EEG +KA+E N MF ETSAKAG+N+K
Sbjct: 91 -----------VGNKTDLADLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIK 131
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 83/121 (68%), Positives = 100/121 (82%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
VRLQLWDTAGQERFRSLIPSYIRDS A+VVYDITN SF T+KWI D+ ERG DVII
Sbjct: 29 VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVII 88
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
+LVGNKTDL+D R+V+ EEG +KA+E N MF ETSAKAG+N+K LF+++AA LP +++
Sbjct: 89 VLVGNKTDLADLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLENNN 148
Query: 350 N 350
N
Sbjct: 149 N 149
>gi|145501222|ref|XP_001436593.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124403734|emb|CAK69196.1| unnamed protein product [Paramecium tetraurelia]
Length = 216
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 105/235 (44%), Positives = 128/235 (54%), Gaps = 64/235 (27%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
+ G PL K+KLVFLG+QSVGKTS+I RFM+D+FD
Sbjct: 4 TKGSMVAPLSKYKLVFLGDQSVGKTSIIN-----------------------RFMFDTFD 40
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
T+GIDF+SKT+Y EDRT+RLQLWDTAGQERFRSLIPSYIRDS VAVV YD+
Sbjct: 41 GKDHPTVGIDFISKTLYYEDRTIRLQLWDTAGQERFRSLIPSYIRDSAVAVVCYDVEVKT 100
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF ++WI DVR ERG+DVI
Sbjct: 101 SFASITRWISDVRLERGNDVI--------------------------------------- 121
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDT 237
I +V NK D+ ++R +STEEG AKE + FIE SAK G NV+ + Q+ T
Sbjct: 122 --IFIVANKIDVLNERVISTEEGANLAKECDAHFIEVSAKTGNNVELLFKQIAAT 174
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/125 (59%), Positives = 94/125 (75%)
Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
Y + +RLQLWDTAGQERFRSLIPSYIRDS VAVV YD+ SF ++WI DVR ERG
Sbjct: 58 YEDRTIRLQLWDTAGQERFRSLIPSYIRDSAVAVVCYDVEVKTSFASITRWISDVRLERG 117
Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
+DVII +V NK D+ ++R +STEEG AKE + FIE SAK G NV+ LF+++AA LPG
Sbjct: 118 NDVIIFIVANKIDVLNERVISTEEGANLAKECDAHFIEVSAKTGNNVELLFKQIAATLPG 177
Query: 345 MDSTE 349
++++
Sbjct: 178 TETSQ 182
>gi|340500026|gb|EGR26932.1| ras oncogene family protein, putative [Ichthyophthirius
multifiliis]
Length = 227
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 105/228 (46%), Positives = 132/228 (57%), Gaps = 64/228 (28%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
+ G PL K+KLVFLG+Q+VGKTS+I RFM+D+FD
Sbjct: 5 TKGSIATPLSKYKLVFLGDQAVGKTSIIN-----------------------RFMFDTFD 41
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
T+GIDF+SKT+Y EDRT+RLQLWDTAGQERFRSLIPSYIRDS VAV+ YDITN +
Sbjct: 42 GKDHPTVGIDFISKTLYYEDRTIRLQLWDTAGQERFRSLIPSYIRDSAVAVICYDITNKS 101
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF +KW++DVR ERG +VII L
Sbjct: 102 SFENITKWVEDVRAERGQEVIICL------------------------------------ 125
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTD+ DKR + +E ++KAKEL+V F E SA +G N++Q+
Sbjct: 126 -----VGNKTDMQDKRAIQQQEAQQKAKELDVKFFEVSALSGDNIQQL 168
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/131 (58%), Positives = 100/131 (76%), Gaps = 3/131 (2%)
Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
Y + +RLQLWDTAGQERFRSLIPSYIRDS VAV+ YDITN +SF +KW++DVR ERG
Sbjct: 59 YEDRTIRLQLWDTAGQERFRSLIPSYIRDSAVAVICYDITNKSSFENITKWVEDVRAERG 118
Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
+VII LVGNKTD+ DKR + +E ++KAKEL+V F E SA +G N++QLF+ + LPG
Sbjct: 119 QEVIICLVGNKTDMQDKRAIQQQEAQQKAKELDVKFFEVSALSGDNIQQLFKAIGGMLPG 178
Query: 345 MDST---ENKP 352
+ + +N+P
Sbjct: 179 AEISQIGQNQP 189
>gi|70948028|ref|XP_743573.1| rab6 [Plasmodium chabaudi chabaudi]
gi|56523134|emb|CAH77100.1| rab6, putative [Plasmodium chabaudi chabaudi]
Length = 175
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/172 (55%), Positives = 112/172 (65%), Gaps = 41/172 (23%)
Query: 57 MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY 116
MYD+FDN YQ+TIGIDFLSKT+YL++ VRLQLWDTAGQERFRSLIPSYIRDS A+VVY
Sbjct: 1 MYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVY 60
Query: 117 DITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVR 176
DITN SF T+KWI D+ ERG DVII+L
Sbjct: 61 DITNRQSFENTTKWIQDILNERGKDVIIVL------------------------------ 90
Query: 177 TERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDL+D R+V+ EEG +KA+E N MF ETSAKAG+N+K
Sbjct: 91 -----------VGNKTDLADLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIK 131
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/114 (71%), Positives = 96/114 (84%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
VRLQLWDTAGQERFRSLIPSYIRDS A+VVYDITN SF T+KWI D+ ERG DVII
Sbjct: 29 VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVII 88
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
+LVGNKTDL+D R+V+ EEG +KA+E N MF ETSAKAG+N+K LF+++AA LP
Sbjct: 89 VLVGNKTDLADLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLP 142
>gi|156099119|ref|XP_001615562.1| small GTPase Rab6 [Plasmodium vivax Sal-1]
gi|148804436|gb|EDL45835.1| small GTPase Rab6, putative [Plasmodium vivax]
Length = 176
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 96/172 (55%), Positives = 110/172 (63%), Gaps = 41/172 (23%)
Query: 57 MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY 116
MYD+FDN YQ+TIGIDFLSKT+YL++ VRLQLWDTAGQERFRSLIPSYIRDS A+VVY
Sbjct: 1 MYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVY 60
Query: 117 DITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVR 176
DITN SF T+KWI D+ ERG DVII L
Sbjct: 61 DITNRQSFENTTKWIQDILNERGKDVIIAL------------------------------ 90
Query: 177 TERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDL D R+V+ EEG +KA+E N MF ETSAKAG+N+K
Sbjct: 91 -----------VGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIK 131
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/119 (69%), Positives = 98/119 (82%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
VRLQLWDTAGQERFRSLIPSYIRDS A+VVYDITN SF T+KWI D+ ERG DVII
Sbjct: 29 VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVII 88
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDST 348
LVGNKTDL D R+V+ EEG +KA+E N MF ETSAKAG+N+K LF+++AA LP +D++
Sbjct: 89 ALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147
>gi|328873768|gb|EGG22134.1| Rab GTPase [Dictyostelium fasciculatum]
Length = 175
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 85/112 (75%), Positives = 101/112 (90%)
Query: 236 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNK 295
D +GQERFRSLIPSYIRDS+VA+VVYDITN NSF T KWI+DVR+ERG++V+IMLVGNK
Sbjct: 30 DLSGQERFRSLIPSYIRDSSVAIVVYDITNKNSFLNTIKWIEDVRSERGNNVVIMLVGNK 89
Query: 296 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
TDL+DKRQVS EEGE KAKE +MF ETSAKAG+N+K LFR+VA+ALPG+D+
Sbjct: 90 TDLADKRQVSIEEGEAKAKEYEIMFTETSAKAGFNIKALFRKVASALPGIDT 141
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 97/162 (59%), Gaps = 48/162 (29%)
Query: 76 KTMYLEDRTVRLQLW-------DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
K ++L D++V W D +GQERFRSLIPSYIRDS+VA+VVYDITN NS
Sbjct: 8 KLVFLGDQSVGKVRWIIPLLSQDLSGQERFRSLIPSYIRDSSVAIVVYDITNKNS----- 62
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
F T KWI+DVR+ERG++V+IMLV
Sbjct: 63 ------------------------------------FLNTIKWIEDVRSERGNNVVIMLV 86
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL+DKRQVS EEGE KAKE +MF ETSAKAG+N+K +
Sbjct: 87 GNKTDLADKRQVSIEEGEAKAKEYEIMFTETSAKAGFNIKAL 128
>gi|443898918|dbj|GAC76251.1| cAMP-dependent protein kinase catalytic subunit [Pseudozyma
antarctica T-34]
Length = 2447
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 115/217 (52%), Positives = 132/217 (60%), Gaps = 48/217 (22%)
Query: 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL 74
+LVFLGEQSVGKTSL ITRFMYD+FDNTYQATIGIDFL
Sbjct: 8 QLVFLGEQSVGKTSL-----------------------ITRFMYDTFDNTYQATIGIDFL 44
Query: 75 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW--ID 132
SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI TSKW
Sbjct: 45 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDI--------TSKWPRPQ 96
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
R RG ++ + N L H + + R R +
Sbjct: 97 AQRQRRGVEL------TRWENRPGLVPEHIEMGGRRACGARQRRDHRAR--------GQQ 142
Query: 193 DLSDKRQ-VSTEEGERKAKELNVMFIETSAKAGYNVK 228
D S++++ V+TEE E+KA+E NVMFIETSAKAG+NVK
Sbjct: 143 DGSERQEVVTTEEAEQKAQEFNVMFIETSAKAGHNVK 179
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 74/148 (50%), Positives = 88/148 (59%), Gaps = 38/148 (25%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW--IDDVRTERGS 285
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDI TSKW R RG
Sbjct: 53 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDI--------TSKWPRPQAQRQRRGV 104
Query: 286 DVI-----IMLVGNKTDLSDKRQ-----------------------VSTEEGERKAKELN 317
++ LV ++ +R V+TEE E+KA+E N
Sbjct: 105 ELTRWENRPGLVPEHIEMGGRRACGARQRRDHRARGQQDGSERQEVVTTEEAEQKAQEFN 164
Query: 318 VMFIETSAKAGYNVKQLFRRVAAALPGM 345
VMFIETSAKAG+NVK LF+++A ALPGM
Sbjct: 165 VMFIETSAKAGHNVKVLFKKIAQALPGM 192
>gi|221056628|ref|XP_002259452.1| rab6 [Plasmodium knowlesi strain H]
gi|193809523|emb|CAQ40225.1| rab6, putative [Plasmodium knowlesi strain H]
Length = 176
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 96/172 (55%), Positives = 110/172 (63%), Gaps = 41/172 (23%)
Query: 57 MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY 116
MYD+FDN YQ+TIGIDFLSKT+YL++ VRLQLWDTAGQERFRSLIPSYIRDS A+VVY
Sbjct: 1 MYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVY 60
Query: 117 DITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVR 176
DITN SF T+KWI D+ ERG DVII L
Sbjct: 61 DITNRQSFENTTKWIQDILNERGKDVIIAL------------------------------ 90
Query: 177 TERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDL D R+V+ EEG +KA+E N MF ETSAKAG+N+K
Sbjct: 91 -----------VGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIK 131
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/119 (69%), Positives = 98/119 (82%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
VRLQLWDTAGQERFRSLIPSYIRDS A+VVYDITN SF T+KWI D+ ERG DVII
Sbjct: 29 VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVII 88
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDST 348
LVGNKTDL D R+V+ EEG +KA+E N MF ETSAKAG+N+K LF+++AA LP +D++
Sbjct: 89 ALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147
>gi|11558651|emb|CAC17834.1| secretion related GTPase (SrgC) [Aspergillus niger]
Length = 138
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 86/112 (76%), Positives = 100/112 (89%)
Query: 235 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGN 294
WDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DVII+LVGN
Sbjct: 1 WDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRGERGNDVIIVLVGN 60
Query: 295 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
KTDL+DKR+V+T +GE +AK+ +MFIETSAK G+NVKQLFRR+A A PGM+
Sbjct: 61 KTDLNDKREVTTAQGEEEAKKNGLMFIETSAKVGHNVKQLFRRIAXAXPGME 112
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/141 (54%), Positives = 90/141 (63%), Gaps = 41/141 (29%)
Query: 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGS 149
WDTAGQERFRSLIPSYIRDS+VAVVVYDI+NA SF T KWIDDVR ERG+DVII+L
Sbjct: 1 WDTAGQERFRSLIPSYIRDSSVAVVVYDISNAKSFQNTRKWIDDVRGERGNDVIIVL--- 57
Query: 150 IETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKA 209
VGNKTDL+DKR+V+T +GE +A
Sbjct: 58 --------------------------------------VGNKTDLNDKREVTTAQGEEEA 79
Query: 210 KELNVMFIETSAKAGYNVKQV 230
K+ +MFIETSAK G+NVKQ+
Sbjct: 80 KKNGLMFIETSAKVGHNVKQL 100
>gi|406601670|emb|CCH46723.1| Guanine nucleotide-binding protein subunit beta 2 [Wickerhamomyces
ciferrii]
Length = 1045
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 97/175 (55%), Positives = 113/175 (64%), Gaps = 42/175 (24%)
Query: 57 MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY 116
MYD+FD+ Y ATIGIDFLSKTMYL+D+TVRLQLWDTAGQERFRSLIPSYIRDS VAV+VY
Sbjct: 1 MYDTFDDNYAATIGIDFLSKTMYLDDKTVRLQLWDTAGQERFRSLIPSYIRDSHVAVIVY 60
Query: 117 DITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVR 176
DIT+ SF KWI+DV+ ER +V++ L
Sbjct: 61 DITSKKSFELVDKWIEDVKAERSENVVLCL------------------------------ 90
Query: 177 TERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQV 230
VGNK DL+DKRQVS E+GE KAKEL+ +FIETS K GYNVK +
Sbjct: 91 -----------VGNKNDLADKRQVSLEDGEAKAKELSCSIFIETSTKLGYNVKNM 134
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 84/128 (65%), Positives = 102/128 (79%), Gaps = 1/128 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K VRLQLWDTAGQERFRSLIPSYIRDS VAV+VYDIT+ SF KWI+DV+ ER +V
Sbjct: 27 KTVRLQLWDTAGQERFRSLIPSYIRDSHVAVIVYDITSKKSFELVDKWIEDVKAERSENV 86
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPGMD 346
++ LVGNK DL+DKRQVS E+GE KAKEL+ +FIETS K GYNVK +F++VA +LP +
Sbjct: 87 VLCLVGNKNDLADKRQVSLEDGEAKAKELSCSIFIETSTKLGYNVKNMFKKVAKSLPEFE 146
Query: 347 STENKPPE 354
++N PE
Sbjct: 147 ESKNSQPE 154
>gi|145529337|ref|XP_001450457.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74831341|emb|CAI39286.1| rab_B75 [Paramecium tetraurelia]
gi|124418068|emb|CAK83060.1| unnamed protein product [Paramecium tetraurelia]
Length = 215
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 113/267 (42%), Positives = 141/267 (52%), Gaps = 67/267 (25%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
+ G PL K+KLVFLG+QSVGKTS+I RFM+D+FD
Sbjct: 4 TKGSMVAPLSKYKLVFLGDQSVGKTSIIN-----------------------RFMFDTFD 40
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
T+GIDF+SKT+Y EDRT+RLQLWDTAGQERFRSLIPSYIRDS VAVV YD+
Sbjct: 41 GKDHPTVGIDFISKTLYYEDRTIRLQLWDTAGQERFRSLIPSYIRDSAVAVVCYDV---- 96
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
+V+ SF KWI+DVR ERG+D
Sbjct: 97 ----------EVK---------------------------QSFESVVKWIEDVRLERGND 119
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQER 242
VII LV NK DL + R +STE+G AKE + FIE SAK G NV+ + Q+ T
Sbjct: 120 VIIFLVANKIDL-ENRVISTEQGATLAKEQDAHFIEVSAKLGSNVELLFKQIAATLPGTE 178
Query: 243 FRSLIPSYIRDSTVA--VVVYDITNAN 267
++ S + T +++ D N N
Sbjct: 179 TSQMVNSVVNHPTQPNNIILDDPQNQN 205
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/125 (60%), Positives = 93/125 (74%), Gaps = 1/125 (0%)
Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
Y + +RLQLWDTAGQERFRSLIPSYIRDS VAVV YD+ SF KWI+DVR ERG
Sbjct: 58 YEDRTIRLQLWDTAGQERFRSLIPSYIRDSAVAVVCYDVEVKQSFESVVKWIEDVRLERG 117
Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
+DVII LV NK DL + R +STE+G AKE + FIE SAK G NV+ LF+++AA LPG
Sbjct: 118 NDVIIFLVANKIDL-ENRVISTEQGATLAKEQDAHFIEVSAKLGSNVELLFKQIAATLPG 176
Query: 345 MDSTE 349
++++
Sbjct: 177 TETSQ 181
>gi|146075496|ref|XP_001462715.1| small GTP binding protein rab6-like protein [Leishmania infantum
JPCM5]
gi|134066794|emb|CAM65254.1| small GTP binding protein rab6-like protein [Leishmania infantum
JPCM5]
Length = 274
Score = 183 bits (465), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 127/226 (56%), Gaps = 66/226 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++K KLV LG+QSVGKTS+I TRFMYD+FD YQ TIG
Sbjct: 22 MQKHKLVLLGDQSVGKTSII-----------------------TRFMYDTFDQQYQPTIG 58
Query: 71 IDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
IDF SKT++LED R VRL LWDTAGQERF SLIPSYIR+S VVVYDIT+ +F K
Sbjct: 59 IDFFSKTVHLEDDRDVRLHLWDTAGQERFHSLIPSYIRNSAATVVVYDITSRPTFFSAFK 118
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
WID+VR+E G DV+IML VG
Sbjct: 119 WIDEVRSESGDDVVIML-----------------------------------------VG 137
Query: 190 NKTD-LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NK D S++R+VS EE +KA E NV+F+E SAK G N+K + Q+
Sbjct: 138 NKVDQASERREVSAEEAMKKASECNVLFMEVSAKHGTNIKHMFRQV 183
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 77/122 (63%), Positives = 93/122 (76%), Gaps = 1/122 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRL LWDTAGQERF SLIPSYIR+S VVVYDIT+ +F KWID+VR+E G DV
Sbjct: 72 RDVRLHLWDTAGQERFHSLIPSYIRNSAATVVVYDITSRPTFFSAFKWIDEVRSESGDDV 131
Query: 288 IIMLVGNKTD-LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
+IMLVGNK D S++R+VS EE +KA E NV+F+E SAK G N+K +FR+VAAALP
Sbjct: 132 VIMLVGNKVDQASERREVSAEEAMKKASECNVLFMEVSAKHGTNIKHMFRQVAAALPAPA 191
Query: 347 ST 348
ST
Sbjct: 192 ST 193
>gi|407409243|gb|EKF32227.1| small GTP-binding protein RAB6, putative [Trypanosoma cruzi
marinkellei]
Length = 283
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 103/216 (47%), Positives = 126/216 (58%), Gaps = 64/216 (29%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
K K+V LG+QSVGKTSL+ TRFMYD+FD YQATIGID
Sbjct: 41 KHKIVLLGDQSVGKTSLV-----------------------TRFMYDTFDQQYQATIGID 77
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
F SKT+ +++RTVRL +WDTAGQERFRSLIPSYIR+S+ +VVYDIT+ SF T KWID
Sbjct: 78 FFSKTIPVDNRTVRLHVWDTAGQERFRSLIPSYIRNSSGTIVVYDITSRASFLGTFKWID 137
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
+VR ERG V+I L VGNK+
Sbjct: 138 EVRAERGDSVVIFL-----------------------------------------VGNKS 156
Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
D +KR VSTEE ++KA+E N++F+E SAK G NVK
Sbjct: 157 DAQEKRVVSTEEAQKKAEEYNLVFMEVSAKQGKNVK 192
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/116 (63%), Positives = 92/116 (79%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRL +WDTAGQERFRSLIPSYIR+S+ +VVYDIT+ SF T KWID+VR ERG V
Sbjct: 88 RTVRLHVWDTAGQERFRSLIPSYIRNSSGTIVVYDITSRASFLGTFKWIDEVRAERGDSV 147
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
+I LVGNK+D +KR VSTEE ++KA+E N++F+E SAK G NVK LFR++A LP
Sbjct: 148 VIFLVGNKSDAQEKRVVSTEEAQKKAEEYNLVFMEVSAKQGKNVKALFRKMAELLP 203
>gi|71651576|ref|XP_814463.1| small GTP-binding protein RAB6 [Trypanosoma cruzi strain CL Brener]
gi|70879437|gb|EAN92612.1| small GTP-binding protein RAB6, putative [Trypanosoma cruzi]
Length = 268
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 103/218 (47%), Positives = 126/218 (57%), Gaps = 64/218 (29%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
K K+V LG+QSVGKTSL +TRFMYD+FD YQATIGID
Sbjct: 34 KHKIVLLGDQSVGKTSL-----------------------VTRFMYDTFDQQYQATIGID 70
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
F SKT+ +++RTVRL +WDTAGQERFRSLIPSYIR+S+ +VVYDIT+ SF T KWID
Sbjct: 71 FFSKTIPVDNRTVRLHVWDTAGQERFRSLIPSYIRNSSGTIVVYDITSRASFLGTFKWID 130
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
+VR ERG V+I L VGNK
Sbjct: 131 EVRAERGDSVVIFL-----------------------------------------VGNKL 149
Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
D +KR VSTEE ++KA+E N++F+E SAK G NVK +
Sbjct: 150 DAQEKRVVSTEEAQKKAEEYNLVFMEVSAKQGKNVKAL 187
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 75/116 (64%), Positives = 92/116 (79%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRL +WDTAGQERFRSLIPSYIR+S+ +VVYDIT+ SF T KWID+VR ERG V
Sbjct: 81 RTVRLHVWDTAGQERFRSLIPSYIRNSSGTIVVYDITSRASFLGTFKWIDEVRAERGDSV 140
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
+I LVGNK D +KR VSTEE ++KA+E N++F+E SAK G NVK LFR++A ALP
Sbjct: 141 VIFLVGNKLDAQEKRVVSTEEAQKKAEEYNLVFMEVSAKQGKNVKALFRKMAEALP 196
>gi|407854096|gb|EKG06642.1| small GTP-binding protein RAB6, putative [Trypanosoma cruzi]
Length = 272
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/216 (47%), Positives = 125/216 (57%), Gaps = 64/216 (29%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
K K+V LG+QSVGKTSL+ TRFMYD+FD YQATIGID
Sbjct: 37 KHKIVLLGDQSVGKTSLV-----------------------TRFMYDTFDQQYQATIGID 73
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
F SKT+ +++RTVRL +WDTAGQERFRSLIPSYIR+S+ +VVYDIT+ SF T KWID
Sbjct: 74 FFSKTIPVDNRTVRLHVWDTAGQERFRSLIPSYIRNSSGTIVVYDITSRASFLGTFKWID 133
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
+VR ERG V+I L VGNK
Sbjct: 134 EVRAERGDSVVIFL-----------------------------------------VGNKL 152
Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
D +KR VSTEE ++KA+E N++F+E SAK G NVK
Sbjct: 153 DAQEKRVVSTEEAQKKAEEYNLVFMEVSAKQGKNVK 188
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 75/116 (64%), Positives = 92/116 (79%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRL +WDTAGQERFRSLIPSYIR+S+ +VVYDIT+ SF T KWID+VR ERG V
Sbjct: 84 RTVRLHVWDTAGQERFRSLIPSYIRNSSGTIVVYDITSRASFLGTFKWIDEVRAERGDSV 143
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
+I LVGNK D +KR VSTEE ++KA+E N++F+E SAK G NVK LFR++A ALP
Sbjct: 144 VIFLVGNKLDAQEKRVVSTEEAQKKAEEYNLVFMEVSAKQGKNVKALFRKMAEALP 199
>gi|84043470|ref|XP_951525.1| small GTP-binding protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|33348344|gb|AAQ15670.1| small GTP-binding protein RAB6, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|62358719|gb|AAX79175.1| small GTP-binding protein RAB6, putative [Trypanosoma brucei]
gi|261326389|emb|CBH09349.1| small GTP-binding protein RAB6, putative [Trypanosoma brucei
gambiense DAL972]
Length = 230
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/221 (45%), Positives = 125/221 (56%), Gaps = 64/221 (28%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
P+ K K+V LG+Q+VGKTSL ITRFMYD+FD YQATI
Sbjct: 24 PVVKHKIVLLGDQAVGKTSL-----------------------ITRFMYDTFDQQYQATI 60
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
GIDF SKT+++ +R RL +WDTAGQERFRSLIPSYIR+S VVVYDIT+ +SF T K
Sbjct: 61 GIDFFSKTLHINNRATRLHVWDTAGQERFRSLIPSYIRNSAATVVVYDITSRSSFLSTFK 120
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
WID+VR RG DVII L VG
Sbjct: 121 WIDEVRAARGDDVIIAL-----------------------------------------VG 139
Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK D+ +KR+VS +E +++A E ++F+E SAK G NVK +
Sbjct: 140 NKCDVQEKREVSADEAQKRADENRLIFVEVSAKTGTNVKSL 180
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/124 (59%), Positives = 94/124 (75%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N + RL +WDTAGQERFRSLIPSYIR+S VVVYDIT+ +SF T KWID+VR RG
Sbjct: 72 NNRATRLHVWDTAGQERFRSLIPSYIRNSAATVVVYDITSRSSFLSTFKWIDEVRAARGD 131
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
DVII LVGNK D+ +KR+VS +E +++A E ++F+E SAK G NVK LFR+VA A+P +
Sbjct: 132 DVIIALVGNKCDVQEKREVSADEAQKRADENRLIFVEVSAKTGTNVKSLFRKVAEAIPVV 191
Query: 346 DSTE 349
+ E
Sbjct: 192 EICE 195
>gi|340505433|gb|EGR31760.1| ras oncogene family protein, putative [Ichthyophthirius
multifiliis]
Length = 223
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 130/224 (58%), Gaps = 64/224 (28%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+RK+KLVF+G+QSVGK+S+I RFMYD+F T Q T+G
Sbjct: 10 VRKYKLVFIGDQSVGKSSIIN-----------------------RFMYDNFTGTQQPTVG 46
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDF++KT++LE++T+RLQLWDTAGQERFRSLIPSYIRDS ++VYD TN +SF +KW
Sbjct: 47 IDFVAKTLHLENKTIRLQLWDTAGQERFRSLIPSYIRDSDAGIIVYDTTNLSSFQNLNKW 106
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
+D VR ERG DV+ I+L+ N
Sbjct: 107 LDYVREERGKDVL-----------------------------------------IVLLAN 125
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
K DL+D+RQVSTE+G + A E ++F E SAK G N++ V Q+
Sbjct: 126 KIDLADQRQVSTEDGNKFATEQGLLFFEVSAKDGNNIQNVFKQI 169
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/122 (55%), Positives = 92/122 (75%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K +RLQLWDTAGQERFRSLIPSYIRDS ++VYD TN +SF +KW+D VR ERG DV
Sbjct: 59 KTIRLQLWDTAGQERFRSLIPSYIRDSDAGIIVYDTTNLSSFQNLNKWLDYVREERGKDV 118
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+I+L+ NK DL+D+RQVSTE+G + A E ++F E SAK G N++ +F++++ +L D
Sbjct: 119 LIVLLANKIDLADQRQVSTEDGNKFATEQGLLFFEVSAKDGNNIQNVFKQISYSLLSSDK 178
Query: 348 TE 349
+
Sbjct: 179 QD 180
>gi|398009439|ref|XP_003857919.1| small GTP binding protein rab6-like protein [Leishmania donovani]
gi|322496122|emb|CBZ31193.1| small GTP binding protein rab6-like protein [Leishmania donovani]
Length = 274
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 127/226 (56%), Gaps = 66/226 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++K KLV LG+QSVGKTS+I TRFMYD+FD YQ TIG
Sbjct: 22 MQKHKLVLLGDQSVGKTSII-----------------------TRFMYDTFDQQYQPTIG 58
Query: 71 IDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
IDF SKT++LED R VRL LWDTAGQERF SLIPSYIR+S VVVYDIT+ +F K
Sbjct: 59 IDFFSKTVHLEDDRDVRLHLWDTAGQERFHSLIPSYIRNSAATVVVYDITSRPTFFSAFK 118
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
WID+VR+E G DV+IML VG
Sbjct: 119 WIDEVRSESGDDVVIML-----------------------------------------VG 137
Query: 190 NKTD-LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NK D S++R+VS EE +KA E NV+F+E SAK G N+K + Q+
Sbjct: 138 NKVDQASERREVSAEEAMKKAFECNVLFMEVSAKHGTNIKHMFRQV 183
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/122 (63%), Positives = 93/122 (76%), Gaps = 1/122 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRL LWDTAGQERF SLIPSYIR+S VVVYDIT+ +F KWID+VR+E G DV
Sbjct: 72 RDVRLHLWDTAGQERFHSLIPSYIRNSAATVVVYDITSRPTFFSAFKWIDEVRSESGDDV 131
Query: 288 IIMLVGNKTD-LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
+IMLVGNK D S++R+VS EE +KA E NV+F+E SAK G N+K +FR+VAAALP
Sbjct: 132 VIMLVGNKVDQASERREVSAEEAMKKAFECNVLFMEVSAKHGTNIKHMFRQVAAALPAPA 191
Query: 347 ST 348
ST
Sbjct: 192 ST 193
>gi|350534828|ref|NP_001232399.1| putative RAB6A member RAS oncogene family variant 4 [Taeniopygia
guttata]
gi|197129907|gb|ACH46405.1| putative RAB6A member RAS oncogene family variant 4 [Taeniopygia
guttata]
Length = 135
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 92/120 (76%), Positives = 94/120 (78%), Gaps = 23/120 (19%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MSS GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSSGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS AVVVYDIT+
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITS 97
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/38 (84%), Positives = 35/38 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 265
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDIT+
Sbjct: 60 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITS 97
>gi|343473101|emb|CCD14917.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 231
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 126/220 (57%), Gaps = 64/220 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+ K+K+V LG+QSVGKTSL +TRFMYD+FD YQATIG
Sbjct: 27 MAKYKIVLLGDQSVGKTSL-----------------------VTRFMYDTFDQQYQATIG 63
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDF SKT+++++R V L +WDTAGQERFRSLIPSYIR+S A++VYDIT+ SF T W
Sbjct: 64 IDFFSKTLHVDNRAVWLHVWDTAGQERFRSLIPSYIRNSAAAIIVYDITSRVSFLSTFDW 123
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
+D+VR RGSDV++ L VGN
Sbjct: 124 VDEVRKVRGSDVVVAL-----------------------------------------VGN 142
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
K D ++R+VSTEE ++KA E ++F+E SAK G NVK +
Sbjct: 143 KCDAQERREVSTEEAQKKADEYCLIFVEVSAKQGTNVKSL 182
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/119 (59%), Positives = 91/119 (76%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ V L +WDTAGQERFRSLIPSYIR+S A++VYDIT+ SF T W+D+VR RGSDV
Sbjct: 76 RAVWLHVWDTAGQERFRSLIPSYIRNSAAAIIVYDITSRVSFLSTFDWVDEVRKVRGSDV 135
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
++ LVGNK D ++R+VSTEE ++KA E ++F+E SAK G NVK LFR+VA A+P D
Sbjct: 136 VVALVGNKCDAQERREVSTEEAQKKADEYCLIFVEVSAKQGTNVKSLFRKVAEAMPVAD 194
>gi|389592722|ref|XP_003721632.1| small GTP binding protein rab6-like protein [Leishmania major
strain Friedlin]
gi|321438164|emb|CBZ11916.1| small GTP binding protein rab6-like protein [Leishmania major
strain Friedlin]
Length = 274
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/226 (45%), Positives = 127/226 (56%), Gaps = 66/226 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+ K KLV LG+QSVGKTS+I TRFMYD+FD YQ TIG
Sbjct: 22 MPKHKLVLLGDQSVGKTSII-----------------------TRFMYDTFDQQYQPTIG 58
Query: 71 IDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
IDF SKT++L+D R VRL LWDTAGQERF SLIPSYIR+S VVVYDIT+ +F K
Sbjct: 59 IDFFSKTVHLDDDRDVRLHLWDTAGQERFHSLIPSYIRNSAATVVVYDITSRPTFFSAFK 118
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
WID+VR+E G+DV+IML VG
Sbjct: 119 WIDEVRSESGADVVIML-----------------------------------------VG 137
Query: 190 NKTD-LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NK D S++R+VS EE +KA E +V+F+E SAK G N+K + Q+
Sbjct: 138 NKVDQASERREVSAEEAMKKASECSVLFMEVSAKHGTNIKHMFRQV 183
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 74/117 (63%), Positives = 92/117 (78%), Gaps = 1/117 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRL LWDTAGQERF SLIPSYIR+S VVVYDIT+ +F KWID+VR+E G+DV
Sbjct: 72 RDVRLHLWDTAGQERFHSLIPSYIRNSAATVVVYDITSRPTFFSAFKWIDEVRSESGADV 131
Query: 288 IIMLVGNKTD-LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
+IMLVGNK D S++R+VS EE +KA E +V+F+E SAK G N+K +FR+VAAALP
Sbjct: 132 VIMLVGNKVDQASERREVSAEEAMKKASECSVLFMEVSAKHGTNIKHMFRQVAAALP 188
>gi|307949535|gb|ADN96603.1| Rab GTPase 6 [Euplotes octocarinatus]
Length = 220
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 124/218 (56%), Gaps = 64/218 (29%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
K+K+VFLG+QSV KTS+I R FM+D+FD YQATIGID
Sbjct: 19 KYKVVFLGDQSVCKTSIILR-----------------------FMHDTFDPNYQATIGID 55
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
FLSK M ++D+ VRLQLWDTAGQERF+SLIPSYI+DS+ A+V YDIT+ +F W+D
Sbjct: 56 FLSKAMVVDDKMVRLQLWDTAGQERFKSLIPSYIQDSSFAIVCYDITSKQTFEHVKTWVD 115
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
D R RG +V I++ VGNK
Sbjct: 116 DARNIRGDNVSIII-----------------------------------------VGNKI 134
Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
DL+++R+V TEEG++ A EL V FIE SAKAG N+K +
Sbjct: 135 DLAEQREVYTEEGKKLADELGVSFIEASAKAGINIKAL 172
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 72/124 (58%), Positives = 95/124 (76%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K VRLQLWDTAGQERF+SLIPSYI+DS+ A+V YDIT+ +F W+DD R RG +V
Sbjct: 66 KMVRLQLWDTAGQERFKSLIPSYIQDSSFAIVCYDITSKQTFEHVKTWVDDARNIRGDNV 125
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
I++VGNK DL+++R+V TEEG++ A EL V FIE SAKAG N+K LF+ +A+ LPG ++
Sbjct: 126 SIIIVGNKIDLAEQREVYTEEGKKLADELGVSFIEASAKAGINIKALFKTLASNLPGNEN 185
Query: 348 TENK 351
+ K
Sbjct: 186 GKTK 189
>gi|401414254|ref|XP_003871625.1| small GTP binding protein rab6-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322487843|emb|CBZ23087.1| small GTP binding protein rab6-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 274
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 124/224 (55%), Gaps = 66/224 (29%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
K KLV LG+QSVGKTS+I TRFMYD+FD YQ TIGID
Sbjct: 24 KHKLVLLGDQSVGKTSII-----------------------TRFMYDTFDQQYQPTIGID 60
Query: 73 FLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
F SKT++L+D R VRL LWDTAGQERF SLIPSYIR+S VVVYDIT+ +F KWI
Sbjct: 61 FFSKTVHLDDDRDVRLHLWDTAGQERFHSLIPSYIRNSAATVVVYDITSRPTFFSAFKWI 120
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
D+VR+E G DV+IML VGNK
Sbjct: 121 DEVRSESGDDVVIML-----------------------------------------VGNK 139
Query: 192 TD-LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
D S++R+VS EE +KA E NV+F E SAK G N+K + Q+
Sbjct: 140 VDQASERREVSAEEAMKKATECNVLFTEVSAKHGTNIKHMFRQV 183
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/122 (63%), Positives = 92/122 (75%), Gaps = 1/122 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRL LWDTAGQERF SLIPSYIR+S VVVYDIT+ +F KWID+VR+E G DV
Sbjct: 72 RDVRLHLWDTAGQERFHSLIPSYIRNSAATVVVYDITSRPTFFSAFKWIDEVRSESGDDV 131
Query: 288 IIMLVGNKTD-LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
+IMLVGNK D S++R+VS EE +KA E NV+F E SAK G N+K +FR+VAAALP
Sbjct: 132 VIMLVGNKVDQASERREVSAEEAMKKATECNVLFTEVSAKHGTNIKHMFRQVAAALPAPA 191
Query: 347 ST 348
ST
Sbjct: 192 ST 193
>gi|429328144|gb|AFZ79904.1| Ras-related rab6 small GTP-binding protein, putative [Babesia equi]
Length = 224
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 103/253 (40%), Positives = 136/253 (53%), Gaps = 68/253 (26%)
Query: 6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTY 65
D P ++ K+V LGEQS GKTS++T RF+YD F Y
Sbjct: 5 DGNTPGQRNKIVLLGEQSAGKTSIVT-----------------------RFVYDHFIPAY 41
Query: 66 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 125
ATIGIDFLSKT+ +T+RLQLWDTAGQERFRSL+PSYIRDS+ A+VVYDITN +SF
Sbjct: 42 AATIGIDFLSKTVTANGKTMRLQLWDTAGQERFRSLMPSYIRDSSAAIVVYDITNRDSFT 101
Query: 126 QTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVII 185
+T +W+ +++ RG +I+
Sbjct: 102 RTKQWVQEIKDMRGDKAVIV---------------------------------------- 121
Query: 186 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRS 245
+VGNKTDL DKR+VS EEGE AKE+N +F ETSAK G NV +L++ + ++
Sbjct: 122 -IVGNKTDLLDKRKVSYEEGESHAKEMNCLFRETSAKNGDNVH----ELFNLVAVKLLKT 176
Query: 246 LIPSYIRDSTVAV 258
P + D V +
Sbjct: 177 TEPEPVSDKLVDI 189
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 81/147 (55%), Positives = 106/147 (72%), Gaps = 4/147 (2%)
Query: 209 AKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 268
A + + F+ + A N K +RLQLWDTAGQERFRSL+PSYIRDS+ A+VVYDITN +S
Sbjct: 42 AATIGIDFLSKTVTA--NGKTMRLQLWDTAGQERFRSLMPSYIRDSSAAIVVYDITNRDS 99
Query: 269 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 328
F +T +W+ +++ RG +I++VGNKTDL DKR+VS EEGE AKE+N +F ETSAK G
Sbjct: 100 FTRTKQWVQEIKDMRGDKAVIVIVGNKTDLLDKRKVSYEEGESHAKEMNCLFRETSAKNG 159
Query: 329 YNVKQLFRRVAAALPGMDSTENKPPED 355
NV +LF VA L + +TE +P D
Sbjct: 160 DNVHELFNLVAVKL--LKTTEPEPVSD 184
>gi|312072937|ref|XP_003139294.1| Rab6A [Loa loa]
Length = 123
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 90/117 (76%), Positives = 93/117 (79%), Gaps = 23/117 (19%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
+ DFGNPL+KFKLVFLGEQSVGKTSL ITRFMYDSFDN
Sbjct: 2 ASDFGNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDN 38
Query: 64 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT+
Sbjct: 39 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITS 95
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 37/38 (97%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 265
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT+
Sbjct: 58 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITS 95
>gi|118365218|ref|XP_001015830.1| Ras family protein [Tetrahymena thermophila]
gi|89297597|gb|EAR95585.1| Ras family protein [Tetrahymena thermophila SB210]
gi|307777802|dbj|BAJ21297.1| Rab-family small GTPase Rab6B [Tetrahymena thermophila]
Length = 227
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 125/218 (57%), Gaps = 65/218 (29%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
P+ KFK+VFLG+QSVGKTS+I RF+YD+F + Q T+
Sbjct: 8 PVVKFKIVFLGDQSVGKTSIIN-----------------------RFIYDNFTGSEQPTV 44
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
GIDF+ KT+ ++++T+RLQLWDTAGQERF+SLIPSYIRDS A++VYDITN NSF +K
Sbjct: 45 GIDFICKTLQMDNKTLRLQLWDTAGQERFKSLIPSYIRDSNAAIIVYDITNQNSFSNVTK 104
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
W+++V+ ERG++ I ++G
Sbjct: 105 WVEEVKEERGNNAFI-----------------------------------------FILG 123
Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 227
NK+DL D R+VS EEG+ KAK+ + F E SAK G N+
Sbjct: 124 NKSDLED-RKVSLEEGQAKAKQFGLNFCEVSAKTGQNI 160
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/122 (55%), Positives = 91/122 (74%), Gaps = 1/122 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K +RLQLWDTAGQERF+SLIPSYIRDS A++VYDITN NSF +KW+++V+ ERG++
Sbjct: 58 KTLRLQLWDTAGQERFKSLIPSYIRDSNAAIIVYDITNQNSFSNVTKWVEEVKEERGNNA 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
I ++GNK+DL D R+VS EEG+ KAK+ + F E SAK G N+ F+ ++ L G +S
Sbjct: 118 FIFILGNKSDLED-RKVSLEEGQAKAKQFGLNFCEVSAKTGQNISSFFKNLSMTLSGGNS 176
Query: 348 TE 349
E
Sbjct: 177 NE 178
>gi|170586196|ref|XP_001897865.1| Ras-related protein Rab-6B [Brugia malayi]
gi|158594260|gb|EDP32844.1| Ras-related protein Rab-6B, putative [Brugia malayi]
Length = 160
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 90/117 (76%), Positives = 93/117 (79%), Gaps = 23/117 (19%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
+ DFGNPL+KFKLVFLGEQSVGKTSL ITRFMYDSFDN
Sbjct: 62 ASDFGNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDN 98
Query: 64 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT+
Sbjct: 99 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITS 155
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 37/38 (97%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 265
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT+
Sbjct: 118 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITS 155
>gi|402594689|gb|EJW88615.1| GTP-binding protein ryh1 [Wuchereria bancrofti]
Length = 100
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/117 (76%), Positives = 93/117 (79%), Gaps = 23/117 (19%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
+ DFGNPL+KFKLVFLGEQSVGKTSL ITRFMYDSFDN
Sbjct: 2 ASDFGNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDN 38
Query: 64 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT+
Sbjct: 39 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITS 95
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 37/38 (97%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 265
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT+
Sbjct: 58 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITS 95
>gi|156088339|ref|XP_001611576.1| Ras family protein [Babesia bovis]
gi|154798830|gb|EDO08008.1| Ras family protein [Babesia bovis]
Length = 227
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/247 (40%), Positives = 132/247 (53%), Gaps = 68/247 (27%)
Query: 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
++ K+V LGEQ+ GKTS++T RF+YD F Y ATIGI
Sbjct: 19 QRIKIVLLGEQNTGKTSIVT-----------------------RFVYDHFVPAYAATIGI 55
Query: 72 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
DFLSK + + +T+RLQLWDTAGQERFR+L+PSYIRDS+ A+VVYDIT+ SF + WI
Sbjct: 56 DFLSKVVTVNGKTMRLQLWDTAGQERFRTLMPSYIRDSSAAIVVYDITSPESFEKVKDWI 115
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
D++ RG IIM+ VGNK
Sbjct: 116 KDIKELRGDKAIIMI-----------------------------------------VGNK 134
Query: 192 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI 251
TDL DKR+VS +EGE +AK+L +F ETSAK G N+ L++T E ++L P +
Sbjct: 135 TDLLDKRKVSYDEGEEEAKKLECLFCETSAKNGDNIN----DLFNTVSTELMKNLEPVPV 190
Query: 252 RDSTVAV 258
D V +
Sbjct: 191 NDKLVDI 197
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/130 (57%), Positives = 93/130 (71%), Gaps = 2/130 (1%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N K +RLQLWDTAGQERFR+L+PSYIRDS+ A+VVYDIT+ SF + WI D++ RG
Sbjct: 65 NGKTMRLQLWDTAGQERFRTLMPSYIRDSSAAIVVYDITSPESFEKVKDWIKDIKELRGD 124
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
IIM+VGNKTDL DKR+VS +EGE +AK+L +F ETSAK G N+ LF V+ L M
Sbjct: 125 KAIIMIVGNKTDLLDKRKVSYDEGEEEAKKLECLFCETSAKNGDNINDLFNTVSTEL--M 182
Query: 346 DSTENKPPED 355
+ E P D
Sbjct: 183 KNLEPVPVND 192
>gi|300121531|emb|CBK22050.2| unnamed protein product [Blastocystis hominis]
Length = 298
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 91/183 (49%), Positives = 117/183 (63%), Gaps = 42/183 (22%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKTS+ITRF+YDSFD TYQ+TIGIDFLSKT+ +R +R+QLWDTAGQERF+SLIPSYIR
Sbjct: 80 GKTSIITRFIYDSFDPTYQSTIGIDFLSKTILYNNRPIRMQLWDTAGQERFQSLIPSYIR 139
Query: 108 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ 167
DS+VAV+VYDI++ +SF KW+ DVR +R D +I+++
Sbjct: 140 DSSVAVIVYDISSRSSFDNVMKWVRDVRDQR--DEVILVI-------------------- 177
Query: 168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 227
VGNKTDLSD R V+ EEG++ A++ N MF E+SAK YN+
Sbjct: 178 --------------------VGNKTDLSDSRAVTIEEGQKLAEDNNAMFFESSAKCNYNI 217
Query: 228 KQV 230
V
Sbjct: 218 DTV 220
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 95/120 (79%), Gaps = 1/120 (0%)
Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
YN + +R+QLWDTAGQERF+SLIPSYIRDS+VAV+VYDI++ +SF KW+ DVR +R
Sbjct: 112 YNNRPIRMQLWDTAGQERFQSLIPSYIRDSSVAVIVYDISSRSSFDNVMKWVRDVRDQR- 170
Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
+VI+++VGNKTDLSD R V+ EEG++ A++ N MF E+SAK YN+ +FR+V LPG
Sbjct: 171 DEVILVIVGNKTDLSDSRAVTIEEGQKLAEDNNAMFFESSAKCNYNIDTVFRKVVEKLPG 230
>gi|403222371|dbj|BAM40503.1| small GTP binding protein rab6 [Theileria orientalis strain
Shintoku]
Length = 222
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 103/244 (42%), Positives = 129/244 (52%), Gaps = 68/244 (27%)
Query: 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL 74
K+V LGEQS GKTS++T RF+YD + Y ATIGIDFL
Sbjct: 16 KIVLLGEQSAGKTSIVT-----------------------RFVYDHYIPAYAATIGIDFL 52
Query: 75 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134
SK + + RT+RLQLWDTAGQERFRSL+PSYIRDS+ A+VVYDITN SF +T WI D+
Sbjct: 53 SKVVTVNQRTMRLQLWDTAGQERFRSLMPSYIRDSSSAIVVYDITNRESFERTRNWIKDI 112
Query: 135 RTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL 194
+ RG +I ++VGNKTDL
Sbjct: 113 KDMRGDKAVI-----------------------------------------VVVGNKTDL 131
Query: 195 SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDS 254
DKR VS EEGE AKE+N F ETSAK G NV+ +L+ E +++ P + D
Sbjct: 132 LDKRTVSFEEGESLAKEMNCFFRETSAKNGDNVQ----ELFTLVASELLKTIEPEPVNDR 187
Query: 255 TVAV 258
V +
Sbjct: 188 LVDI 191
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/130 (60%), Positives = 96/130 (73%), Gaps = 2/130 (1%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N + +RLQLWDTAGQERFRSL+PSYIRDS+ A+VVYDITN SF +T WI D++ RG
Sbjct: 59 NQRTMRLQLWDTAGQERFRSLMPSYIRDSSSAIVVYDITNRESFERTRNWIKDIKDMRGD 118
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
+I++VGNKTDL DKR VS EEGE AKE+N F ETSAK G NV++LF VA+ L +
Sbjct: 119 KAVIVVVGNKTDLLDKRTVSFEEGESLAKEMNCFFRETSAKNGDNVQELFTLVASEL--L 176
Query: 346 DSTENKPPED 355
+ E +P D
Sbjct: 177 KTIEPEPVND 186
>gi|412991207|emb|CCO16052.1| predicted protein [Bathycoccus prasinos]
Length = 295
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 114/249 (45%), Positives = 141/249 (56%), Gaps = 50/249 (20%)
Query: 10 PLRKFKLVFLGEQSV---------------GKTSLITRFMYDS----------FDNTY-- 42
PL K+KLVFLG +S K S+ + F + F +
Sbjct: 17 PLSKYKLVFLGVRSCYLVLFCQEEEEREAEEKYSISSSFRFCGGFVEEECIADFSSLCIQ 76
Query: 43 QATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSL 101
Q VGKTS+I+RFMYD FD TYQATIGIDFLSKT++LE+ R VRLQLWDTAGQERFRSL
Sbjct: 77 QDQSVGKTSVISRFMYDKFDATYQATIGIDFLSKTVHLENSRGVRLQLWDTAGQERFRSL 136
Query: 102 IPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHH 161
IPSYIRDS+VAV+VYD+ N SF +KWID+V+ ERG +V+I +VG N T L
Sbjct: 137 IPSYIRDSSVAVIVYDVANRQSFLNVAKWIDEVKQERGENVVIAIVG----NKTDLVEER 192
Query: 162 ANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSA 221
+ K+ RG + VGN + +E G +FIE SA
Sbjct: 193 EVETEEGEKF------ARGLN-----VGNSSS-------HSESGSTNGGNGGAIFIEASA 234
Query: 222 KAGYNVKQV 230
KAGYNVK +
Sbjct: 235 KAGYNVKAL 243
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/140 (59%), Positives = 101/140 (72%), Gaps = 19/140 (13%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N + VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ N SF +KWID+V+ ERG
Sbjct: 116 NSRGVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNVAKWIDEVKQERGE 175
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-------------------MFIETSAK 326
+V+I +VGNKTDL ++R+V TEEGE+ A+ LNV +FIE SAK
Sbjct: 176 NVVIAIVGNKTDLVEEREVETEEGEKFARGLNVGNSSSHSESGSTNGGNGGAIFIEASAK 235
Query: 327 AGYNVKQLFRRVAAALPGMD 346
AGYNVK LFR++A ALP D
Sbjct: 236 AGYNVKALFRKIAMALPSAD 255
>gi|145540924|ref|XP_001456151.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124423961|emb|CAK88754.1| unnamed protein product [Paramecium tetraurelia]
Length = 220
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 96/231 (41%), Positives = 127/231 (54%), Gaps = 65/231 (28%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
P++KFK+VFLG QSVGKTS+I RF++D+F Q T+
Sbjct: 9 PMQKFKIVFLGNQSVGKTSIIN-----------------------RFIFDNFTGNEQPTV 45
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
GIDF+SKT+ +++++VRLQLWDTAGQERFRSLIPSYIRDS A++ YDITN SF K
Sbjct: 46 GIDFISKTLQVDNKSVRLQLWDTAGQERFRSLIPSYIRDSQAAIICYDITNEKSFQDLQK 105
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
WI+DV+ ERG +V+I ++G
Sbjct: 106 WIEDVKDERGDEVLI-----------------------------------------YILG 124
Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL-WDTAG 239
NKTDL +RQ+ + E KAKEL F E SAK+ +NV + +L +D G
Sbjct: 125 NKTDLESERQIQFDVAEAKAKELGASFSEVSAKSAHNVAEFFKKLSYDLQG 175
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/117 (58%), Positives = 86/117 (73%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K VRLQLWDTAGQERFRSLIPSYIRDS A++ YDITN SF KWI+DV+ ERG +V
Sbjct: 59 KSVRLQLWDTAGQERFRSLIPSYIRDSQAAIICYDITNEKSFQDLQKWIEDVKDERGDEV 118
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
+I ++GNKTDL +RQ+ + E KAKEL F E SAK+ +NV + F++++ L G
Sbjct: 119 LIYILGNKTDLESERQIQFDVAEAKAKELGASFSEVSAKSAHNVAEFFKKLSYDLQG 175
>gi|74834283|emb|CAI44504.1| rab_A74 [Paramecium tetraurelia]
Length = 219
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 96/231 (41%), Positives = 127/231 (54%), Gaps = 65/231 (28%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
P++KFK+VFLG QSVGKTS+I RF++D+F Q T+
Sbjct: 9 PMQKFKIVFLGNQSVGKTSIIN-----------------------RFIFDNFTGNEQPTV 45
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
GIDF+SKT+ +++++VRLQLWDTAGQERFRSLIPSYIRDS A++ YDITN SF K
Sbjct: 46 GIDFISKTLQVDNKSVRLQLWDTAGQERFRSLIPSYIRDSQAAIICYDITNEKSFQDLQK 105
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
WI+DV+ ERG +V+I ++G
Sbjct: 106 WIEDVKDERGDEVLI-----------------------------------------YILG 124
Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL-WDTAG 239
NKTDL +RQ+ + E KAKEL F E SAK+ +NV + +L +D G
Sbjct: 125 NKTDLESERQIQFDVAEAKAKELGASFSEVSAKSAHNVAEFFKKLSYDLQG 175
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/117 (58%), Positives = 86/117 (73%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K VRLQLWDTAGQERFRSLIPSYIRDS A++ YDITN SF KWI+DV+ ERG +V
Sbjct: 59 KSVRLQLWDTAGQERFRSLIPSYIRDSQAAIICYDITNEKSFQDLQKWIEDVKDERGDEV 118
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
+I ++GNKTDL +RQ+ + E KAKEL F E SAK+ +NV + F++++ L G
Sbjct: 119 LIYILGNKTDLESERQIQFDVAEAKAKELGASFSEVSAKSAHNVAEFFKKLSYDLQG 175
>gi|117939079|dbj|BAF36693.1| Small G Protein RAB [Symbiotic protist of Reticulitermes speratus]
Length = 206
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 91/200 (45%), Positives = 119/200 (59%), Gaps = 45/200 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTS+++RFM+DS ++ Y TIGIDFL+K+MYL+ +TVRLQLWDTAGQE+FRSL+P+YI
Sbjct: 5 VGKTSILSRFMFDSLESNYPPTIGIDFLTKSMYLDHQTVRLQLWDTAGQEKFRSLLPNYI 64
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
RD AV+V+D+TN SF WI+DVR +V++M
Sbjct: 65 RDCAAAVIVFDVTNRLSFEHLEGWINDVRNGVNDNVVLM--------------------- 103
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+VGNKTDL DKRQVS+EE + KA L + E SAKAGYN
Sbjct: 104 --------------------IVGNKTDLEDKRQVSSEELQDKANVLCCLSTEASAKAGYN 143
Query: 227 V----KQVRLQLWDTAGQER 242
V K++ L L + G +R
Sbjct: 144 VKNLFKKIALTLLNVGGSQR 163
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 86/115 (74%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQE+FRSL+P+YIRD AV+V+D+TN SF WI+DVR +V
Sbjct: 41 QTVRLQLWDTAGQEKFRSLLPNYIRDCAAAVIVFDVTNRLSFEHLEGWINDVRNGVNDNV 100
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
++M+VGNKTDL DKRQVS+EE + KA L + E SAKAGYNVK LF+++A L
Sbjct: 101 VLMIVGNKTDLEDKRQVSSEELQDKANVLCCLSTEASAKAGYNVKNLFKKIALTL 155
>gi|145537620|ref|XP_001454521.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124422287|emb|CAK87124.1| unnamed protein product [Paramecium tetraurelia]
Length = 220
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 96/231 (41%), Positives = 127/231 (54%), Gaps = 65/231 (28%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
P++KFK+VFLG QSVGKTS+I RF++D+F Q T+
Sbjct: 9 PMQKFKIVFLGNQSVGKTSIIN-----------------------RFIFDNFTGNEQPTV 45
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
GIDF+SKT+ +++++VRLQLWDTAGQERFRSLIPSYIRDS A++ YDITN SF K
Sbjct: 46 GIDFISKTLQVDNKSVRLQLWDTAGQERFRSLIPSYIRDSQAAIICYDITNEKSFQDLQK 105
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
WI+DV+ ERG +V+I ++G
Sbjct: 106 WIEDVKDERGDEVLI-----------------------------------------YILG 124
Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL-WDTAG 239
NK DL +R + T+ GE KAKEL F E SAK+ +NV + +L +D G
Sbjct: 125 NKIDLDQERVIQTDVGEAKAKELGASFSEVSAKSAHNVSEFFKKLSYDLQG 175
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/117 (58%), Positives = 86/117 (73%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K VRLQLWDTAGQERFRSLIPSYIRDS A++ YDITN SF KWI+DV+ ERG +V
Sbjct: 59 KSVRLQLWDTAGQERFRSLIPSYIRDSQAAIICYDITNEKSFQDLQKWIEDVKDERGDEV 118
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
+I ++GNK DL +R + T+ GE KAKEL F E SAK+ +NV + F++++ L G
Sbjct: 119 LIYILGNKIDLDQERVIQTDVGEAKAKELGASFSEVSAKSAHNVSEFFKKLSYDLQG 175
>gi|18266415|gb|AAL67567.1|AF461434_1 small GTP binding protein rab6 [Babesia gibsoni]
Length = 227
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 99/247 (40%), Positives = 132/247 (53%), Gaps = 68/247 (27%)
Query: 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
++ K+V LGEQS GKTS++T RF+YD F Y ATIGI
Sbjct: 19 QRIKIVLLGEQSTGKTSIVT-----------------------RFVYDHFVQQYAATIGI 55
Query: 72 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
DFLSK + + +T+RLQLWDTAGQERFR+L+PSYIRDS+ A+VVYDITN SF + +W+
Sbjct: 56 DFLSKVVTVNGKTMRLQLWDTAGQERFRTLMPSYIRDSSAAIVVYDITNRESFERVKEWV 115
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
D++ RG II++ VGNK
Sbjct: 116 KDIKELRGDKAIIVI-----------------------------------------VGNK 134
Query: 192 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI 251
TDL DKR+VS +EGE +A +L +F ETSAK G N+ L++T E ++L P +
Sbjct: 135 TDLLDKRKVSYDEGEEEAGKLECLFCETSAKNGDNIN----DLFNTMATELLKNLEPVPV 190
Query: 252 RDSTVAV 258
D V +
Sbjct: 191 NDKLVDI 197
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/130 (55%), Positives = 93/130 (71%), Gaps = 2/130 (1%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N K +RLQLWDTAGQERFR+L+PSYIRDS+ A+VVYDITN SF + +W+ D++ RG
Sbjct: 65 NGKTMRLQLWDTAGQERFRTLMPSYIRDSSAAIVVYDITNRESFERVKEWVKDIKELRGD 124
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
II++VGNKTDL DKR+VS +EGE +A +L +F ETSAK G N+ LF +A L +
Sbjct: 125 KAIIVIVGNKTDLLDKRKVSYDEGEEEAGKLECLFCETSAKNGDNINDLFNTMATEL--L 182
Query: 346 DSTENKPPED 355
+ E P D
Sbjct: 183 KNLEPVPVND 192
>gi|74831248|emb|CAI39270.1| rab_B74 [Paramecium tetraurelia]
Length = 219
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 122/220 (55%), Gaps = 64/220 (29%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
P++KFK+VFLG QSVGKTS+I RF++D+F Q T+
Sbjct: 9 PMQKFKIVFLGNQSVGKTSIIN-----------------------RFIFDNFTGNEQPTV 45
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
GIDF+SKT+ +++++VRLQLWDTAGQERFRSLIPSYIRDS A++ YDITN SF K
Sbjct: 46 GIDFISKTLQVDNKSVRLQLWDTAGQERFRSLIPSYIRDSQAAIICYDITNEKSFQDLQK 105
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
WI+DV+ ERG +V+I ++G
Sbjct: 106 WIEDVKDERGDEVLI-----------------------------------------YILG 124
Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 229
NK DL +R + T+ GE KAKEL F E SAK+ +NV +
Sbjct: 125 NKIDLDQERVIQTDVGEAKAKELGASFSEVSAKSAHNVSE 164
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 85/115 (73%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K VRLQLWDTAGQERFRSLIPSYIRDS A++ YDITN SF KWI+DV+ ERG +V
Sbjct: 59 KSVRLQLWDTAGQERFRSLIPSYIRDSQAAIICYDITNEKSFQDLQKWIEDVKDERGDEV 118
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+I ++GNK DL +R + T+ GE KAKEL F E SAK+ +NV + F++++ L
Sbjct: 119 LIYILGNKIDLDQERVIQTDVGEAKAKELGASFSEVSAKSAHNVSEFFKKLSYDL 173
>gi|145549235|ref|XP_001460297.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124428126|emb|CAK92900.1| unnamed protein product [Paramecium tetraurelia]
Length = 218
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 124/220 (56%), Gaps = 64/220 (29%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
P++K+K+VFLG+Q+VGKTS+I RF++D+F Q T+
Sbjct: 9 PMQKYKIVFLGDQAVGKTSIIN-----------------------RFIFDNFTGNEQPTV 45
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
GIDF+SKT+ +++++VRLQLWDTAGQERFRSLIPSYIRDS A++ +DITN SF +
Sbjct: 46 GIDFISKTLQVDNKSVRLQLWDTAGQERFRSLIPSYIRDSQAAIICFDITNEKSFQNLPR 105
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
WI+DV+ ERG +V+I ++G
Sbjct: 106 WIEDVKEERGDEVLI-----------------------------------------YILG 124
Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 229
NK DL ++RQ+ T++ E KAKEL F E SAK+ NV +
Sbjct: 125 NKIDLENERQIPTKQAEDKAKELGAQFQEVSAKSAINVAE 164
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/117 (56%), Positives = 87/117 (74%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K VRLQLWDTAGQERFRSLIPSYIRDS A++ +DITN SF +WI+DV+ ERG +V
Sbjct: 59 KSVRLQLWDTAGQERFRSLIPSYIRDSQAAIICFDITNEKSFQNLPRWIEDVKEERGDEV 118
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
+I ++GNK DL ++RQ+ T++ E KAKEL F E SAK+ NV + F++++ L G
Sbjct: 119 LIYILGNKIDLENERQIPTKQAEDKAKELGAQFQEVSAKSAINVAEFFKKLSYDLLG 175
>gi|229594060|ref|XP_001025689.3| Ras family protein [Tetrahymena thermophila]
gi|225567120|gb|EAS05444.3| Ras family protein [Tetrahymena thermophila SB210]
Length = 225
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 125/220 (56%), Gaps = 64/220 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++K+KLVF+G+QSVGKTS+I RF+ DSF T Q T+G
Sbjct: 10 VKKYKLVFIGDQSVGKTSIIN-----------------------RFINDSFQGTQQPTVG 46
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDF++KT++L+++T+RLQLWDTAGQERFRSLIPSYIRDS A++VYDITN SF +KW
Sbjct: 47 IDFVAKTLHLDNKTIRLQLWDTAGQERFRSLIPSYIRDSDAAIIVYDITNQASFASVNKW 106
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
+D VR ERG V+ I+L+ N
Sbjct: 107 LDYVREERGDGVL-----------------------------------------IVLLAN 125
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
K DL D+R V T +G++ AK+ N++F E SAK G N+ V
Sbjct: 126 KLDLPDQRAVQTVDGQQFAKQQNLIFSEVSAKEGNNINDV 165
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/122 (55%), Positives = 90/122 (73%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K +RLQLWDTAGQERFRSLIPSYIRDS A++VYDITN SF +KW+D VR ERG V
Sbjct: 59 KTIRLQLWDTAGQERFRSLIPSYIRDSDAAIIVYDITNQASFASVNKWLDYVREERGDGV 118
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+I+L+ NK DL D+R V T +G++ AK+ N++F E SAK G N+ +F+ +A L G +
Sbjct: 119 LIVLLANKLDLPDQRAVQTVDGQQFAKQQNLIFSEVSAKEGNNINDVFKNLAQLLQGSEK 178
Query: 348 TE 349
++
Sbjct: 179 SD 180
>gi|307777800|dbj|BAJ21296.1| Rab-family small GTPase Rab6C [Tetrahymena thermophila]
Length = 224
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 125/220 (56%), Gaps = 64/220 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++K+KLVF+G+QSVGKTS+I RF+ DSF T Q T+G
Sbjct: 10 VKKYKLVFIGDQSVGKTSIIN-----------------------RFINDSFQGTQQPTVG 46
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDF++KT++L+++T+RLQLWDTAGQERFRSLIPSYIRDS A++VYDITN SF +KW
Sbjct: 47 IDFVAKTLHLDNKTIRLQLWDTAGQERFRSLIPSYIRDSDAAIIVYDITNQASFASVNKW 106
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
+D VR ERG V+ I+L+ N
Sbjct: 107 LDYVREERGDGVL-----------------------------------------IVLLAN 125
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
K DL D+R V T +G++ AK+ N++F E SAK G N+ V
Sbjct: 126 KLDLPDQRAVQTVDGQQFAKQQNLIFSEVSAKEGNNINDV 165
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/122 (55%), Positives = 90/122 (73%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K +RLQLWDTAGQERFRSLIPSYIRDS A++VYDITN SF +KW+D VR ERG V
Sbjct: 59 KTIRLQLWDTAGQERFRSLIPSYIRDSDAAIIVYDITNQASFASVNKWLDYVREERGDGV 118
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+I+L+ NK DL D+R V T +G++ AK+ N++F E SAK G N+ +F+ +A L G +
Sbjct: 119 LIVLLANKLDLPDQRAVQTVDGQQFAKQQNLIFSEVSAKEGNNINDVFKNLAQLLQGSEK 178
Query: 348 TE 349
++
Sbjct: 179 SD 180
>gi|403352976|gb|EJY76019.1| Rab6, RAB family GTPase [Oxytricha trifallax]
Length = 221
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 121/222 (54%), Gaps = 64/222 (28%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
K+K+VFLG+QSVGKTS+I RF+YDSFD YQATIGID
Sbjct: 15 KYKVVFLGDQSVGKTSIIH-----------------------RFIYDSFDENYQATIGID 51
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
F+S MY+ED+ + L LWDTAGQERF+SLIPSYI+DS VA+VV+DIT+ SF KWI+
Sbjct: 52 FMSHKMYVEDKIIILNLWDTAGQERFKSLIPSYIKDSAVAIVVFDITSRQSFQSVDKWIE 111
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
D + R DV+++ L GNK
Sbjct: 112 DAKNLRDDDVLLI-----------------------------------------LAGNKA 130
Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
DL+D+RQVS EE A + N+M+ E SA+AG N+ QL
Sbjct: 131 DLADQRQVSYEEATDYAAKRNIMYFEVSARAGTNITMCFNQL 172
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/120 (52%), Positives = 86/120 (71%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K + L LWDTAGQERF+SLIPSYI+DS VA+VV+DIT+ SF KWI+D + R DV
Sbjct: 62 KIIILNLWDTAGQERFKSLIPSYIKDSAVAIVVFDITSRQSFQSVDKWIEDAKNLRDDDV 121
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+++L GNK DL+D+RQVS EE A + N+M+ E SA+AG N+ F ++A L G+++
Sbjct: 122 LLILAGNKADLADQRQVSYEEATDYAAKRNIMYFEVSARAGTNITMCFNQLAKKLTGIET 181
>gi|117939075|dbj|BAF36691.1| Small G Protein RAB [Symbiotic protist of Reticulitermes speratus]
Length = 205
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 88/184 (47%), Positives = 113/184 (61%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTS+++RFM+DSF++ Y TIGIDFL+K+MYL+ +TVRLQLWDTAGQE+FRSL+P+YI
Sbjct: 5 VGKTSILSRFMFDSFESNYLPTIGIDFLTKSMYLDHQTVRLQLWDTAGQEKFRSLLPNYI 64
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
RD AV+V+D+TN SF WI+DVR +V++M
Sbjct: 65 RDCAAAVIVFDVTNRLSFDHLEGWINDVRNGVNDNVVLM--------------------- 103
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+VGNKTDL DKRQV TEE + KA L+ + E SAKAGYN
Sbjct: 104 --------------------IVGNKTDLEDKRQVRTEELQEKANLLSCLSTEASAKAGYN 143
Query: 227 VKQV 230
VK +
Sbjct: 144 VKNL 147
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/128 (57%), Positives = 91/128 (71%), Gaps = 3/128 (2%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQE+FRSL+P+YIRD AV+V+D+TN SF WI+DVR +V
Sbjct: 41 QTVRLQLWDTAGQEKFRSLLPNYIRDCAAAVIVFDVTNRLSFDHLEGWINDVRNGVNDNV 100
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
++M+VGNKTDL DKRQV TEE + KA L+ + E SAKAGYNVK LF+R+A L S
Sbjct: 101 VLMIVGNKTDLEDKRQVRTEELQEKANLLSCLSTEASAKAGYNVKNLFKRIAVTLL---S 157
Query: 348 TENKPPED 355
PPE+
Sbjct: 158 VGGSPPEE 165
>gi|384499370|gb|EIE89861.1| hypothetical protein RO3G_14572 [Rhizopus delemar RA 99-880]
Length = 142
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 86/127 (67%), Positives = 100/127 (78%), Gaps = 12/127 (9%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDIT DVR ERG +V
Sbjct: 6 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITK------------DVRAERGLEV 53
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDLSDKR+V+ EEGE+KA + V+FIETSAKAG+NVK LF+R+A ALPGM++
Sbjct: 54 IIVLVGNKTDLSDKREVTLEEGEKKASDTGVLFIETSAKAGHNVKSLFKRIALALPGMNN 113
Query: 348 TENKPPE 354
N E
Sbjct: 114 DANGIEE 120
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 92/153 (60%), Gaps = 53/153 (34%)
Query: 78 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE 137
MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDIT DVR E
Sbjct: 1 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITK------------DVRAE 48
Query: 138 RGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 197
RG +VII+L VGNKTDLSDK
Sbjct: 49 RGLEVIIVL-----------------------------------------VGNKTDLSDK 67
Query: 198 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
R+V+ EEGE+KA + V+FIETSAKAG+NVK +
Sbjct: 68 REVTLEEGEKKASDTGVLFIETSAKAGHNVKSL 100
>gi|117939077|dbj|BAF36692.1| Small G Protein RAB [Symbiotic protist of Reticulitermes speratus]
Length = 205
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 87/184 (47%), Positives = 113/184 (61%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTS+++RFM+DSF++ Y TIGIDFL+K+MYL+ +TVRLQLWDTAGQE+FRSL+P+YI
Sbjct: 5 VGKTSILSRFMFDSFESNYLPTIGIDFLTKSMYLDHQTVRLQLWDTAGQEKFRSLLPNYI 64
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
RD AV+V+D+TN S+ WI+DVR +V++M
Sbjct: 65 RDCAAAVIVFDVTNRLSYEHLEGWINDVRNGVNDNVVLM--------------------- 103
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+VGNKTDL DKRQV++EE + KA L + E SAKAGYN
Sbjct: 104 --------------------IVGNKTDLEDKRQVTSEELQEKANALCCLSTEASAKAGYN 143
Query: 227 VKQV 230
VK V
Sbjct: 144 VKNV 147
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/122 (53%), Positives = 90/122 (73%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
VRLQLWDTAGQE+FRSL+P+YIRD AV+V+D+TN S+ WI+DVR +V++
Sbjct: 43 VRLQLWDTAGQEKFRSLLPNYIRDCAAAVIVFDVTNRLSYEHLEGWINDVRNGVNDNVVL 102
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
M+VGNKTDL DKRQV++EE + KA L + E SAKAGYNVK +F+++A L + ++
Sbjct: 103 MIVGNKTDLEDKRQVTSEELQEKANALCCLSTEASAKAGYNVKNVFKKIAVTLLNVGGSQ 162
Query: 350 NK 351
++
Sbjct: 163 HE 164
>gi|190348918|gb|EDK41472.2| hypothetical protein PGUG_05570 [Meyerozyma guilliermondii ATCC
6260]
Length = 180
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 96/174 (55%), Positives = 106/174 (60%), Gaps = 43/174 (24%)
Query: 57 MYDSFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVV 115
MYD+FD+ Y ATIGIDFLSKTMYLED RT+RLQLWDTAGQERFRSLIPSYIRDS VAVV
Sbjct: 1 MYDTFDDQYAATIGIDFLSKTMYLEDNRTIRLQLWDTAGQERFRSLIPSYIRDSHVAVVC 60
Query: 116 YDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDV 175
YDITN SF KWI+DVR ERG D II+L
Sbjct: 61 YDITNKKSFQNLEKWINDVRLERGDDAIIVL----------------------------- 91
Query: 176 RTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF-IETSAKAGYNVK 228
VGNK DL +KRQV+ EE E K++ F IETS KA +NVK
Sbjct: 92 ------------VGNKLDLKNKRQVTAEECEELHKKVGSKFYIETSTKANHNVK 133
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 76/117 (64%), Positives = 88/117 (75%), Gaps = 1/117 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS VAVV YDITN SF KWI+DVR ERG D
Sbjct: 28 RTIRLQLWDTAGQERFRSLIPSYIRDSHVAVVCYDITNKKSFQNLEKWINDVRLERGDDA 87
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF-IETSAKAGYNVKQLFRRVAAALP 343
II+LVGNK DL +KRQV+ EE E K++ F IETS KA +NVK LF+++ LP
Sbjct: 88 IIVLVGNKLDLKNKRQVTAEECEELHKKVGSKFYIETSTKANHNVKLLFKKIGQCLP 144
>gi|351700360|gb|EHB03279.1| Ras-related protein Rab-6A [Heterocephalus glaber]
Length = 151
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 85/108 (78%), Positives = 95/108 (87%), Gaps = 2/108 (1%)
Query: 245 SLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV 304
+LIPSYIRDS AVV D+TN N F QT+KWID VRTERGSDVIIML+GNKTDL+DKRQV
Sbjct: 20 ALIPSYIRDSAAAVVFCDVTNVNLFQQTTKWID-VRTERGSDVIIMLLGNKTDLADKRQV 78
Query: 305 STEEGERKAKELNVMFIETSAKAGYNVKQLF-RRVAAALPGMDSTENK 351
S EEGERKAKELNVMF ETSAKAG +VKQLF RRVAAALPGM+S +++
Sbjct: 79 SIEEGERKAKELNVMFTETSAKAGDSVKQLFRRRVAAALPGMESAQDR 126
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/131 (54%), Positives = 79/131 (60%), Gaps = 42/131 (32%)
Query: 100 SLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSF 159
+LIPSYIRDS AVV D+TN N F
Sbjct: 20 ALIPSYIRDSAAAVVFCDVTNVNLF----------------------------------- 44
Query: 160 HHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 219
QT+KWID VRTERGSDVIIML+GNKTDL+DKRQVS EEGERKAKELNVMF ET
Sbjct: 45 ------QQTTKWID-VRTERGSDVIIMLLGNKTDLADKRQVSIEEGERKAKELNVMFTET 97
Query: 220 SAKAGYNVKQV 230
SAKAG +VKQ+
Sbjct: 98 SAKAGDSVKQL 108
>gi|385305861|gb|EIF49808.1| gtp-binding protein ryh1 [Dekkera bruxellensis AWRI1499]
Length = 139
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 79/103 (76%), Positives = 92/103 (89%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTSLITRFMYD+FD+ Y ATIGIDFLSKTMYL+D+T+RLQLWDTAGQERFRSLIPSYI
Sbjct: 16 VGKTSLITRFMYDTFDSHYAATIGIDFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSYI 75
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGS 149
RDS VA+VVYDITN +S + KW+D +R ERG DV+I+LVG+
Sbjct: 76 RDSNVAIVVYDITNRDSXNDVQKWLDYIREERGKDVLIILVGN 118
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 72/88 (81%), Gaps = 1/88 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K +RLQLWDTAGQERFRSLIPSYIRDS VA+VVYDITN +S + KW+D +R ERG DV
Sbjct: 52 KTIRLQLWDTAGQERFRSLIPSYIRDSNVAIVVYDITNRDSXNDVQKWLDYIREERGKDV 111
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKE 315
+I+LVGNK+DL DK V+++E E +K+
Sbjct: 112 LIILVGNKSDLKDK-VVTSDEAEELSKK 138
>gi|117939023|dbj|BAF36665.1| Small G Protein RAB [Pyrsonympha grandis]
Length = 179
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 112/183 (61%), Gaps = 41/183 (22%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKTS+++RFM+DSF++ Y TIGIDFL+K+MYL+ +TVRLQLWDTAGQE+FRSL+P+YIR
Sbjct: 1 GKTSILSRFMFDSFESNYLPTIGIDFLTKSMYLDHQTVRLQLWDTAGQEKFRSLLPNYIR 60
Query: 108 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ 167
D AV+V+D+TN SF WI+DVR +V++M
Sbjct: 61 DCAAAVIVFDVTNRLSFDHLEGWINDVRNGVNDNVVLM---------------------- 98
Query: 168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 227
+VGNKTDL DKRQV TEE + KA L+ + E SAKAGYNV
Sbjct: 99 -------------------IVGNKTDLEDKRQVRTEELQEKANLLSCLSTEASAKAGYNV 139
Query: 228 KQV 230
K +
Sbjct: 140 KNI 142
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 72/128 (56%), Positives = 91/128 (71%), Gaps = 3/128 (2%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQE+FRSL+P+YIRD AV+V+D+TN SF WI+DVR +V
Sbjct: 36 QTVRLQLWDTAGQEKFRSLLPNYIRDCAAAVIVFDVTNRLSFDHLEGWINDVRNGVNDNV 95
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
++M+VGNKTDL DKRQV TEE + KA L+ + E SAKAGYNVK +F+R+A L S
Sbjct: 96 VLMIVGNKTDLEDKRQVRTEELQEKANLLSCLSTEASAKAGYNVKNIFKRIAVTLL---S 152
Query: 348 TENKPPED 355
PPE+
Sbjct: 153 VGGSPPEE 160
>gi|194373731|dbj|BAG56961.1| unnamed protein product [Homo sapiens]
Length = 292
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 138/262 (52%), Gaps = 49/262 (18%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTS + R+ DSF + +T+GIDF KT+Y D+ ++LQ+WDTAGQER+R++ +Y
Sbjct: 33 VGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYY 92
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + +++YDITN SF+
Sbjct: 93 RGAMGFILMYDITNEESFNAVQD------------------------------------- 115
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
W ++T + ++LVGNK D+ D+R VS+E G + A L F E SAK N
Sbjct: 116 ----WSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNIN 171
Query: 227 VKQ--------VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 278
VKQ ++LQ+WDTAGQER+R++ +Y R + +++YDITN SF+ W
Sbjct: 172 VKQTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQ 231
Query: 279 VRTERGSDVIIMLVGNKTDLSD 300
++T + ++LVGNK D+ D
Sbjct: 232 IKTYSWDNAQVLLVGNKCDMED 253
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 70/112 (62%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N K+++LQ+WDTAGQER+R++ +Y R + +++YDITN SF+ W ++T
Sbjct: 67 NDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD 126
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR 337
+ ++LVGNK D+ D+R VS+E G + A L F E SAK NVKQ R
Sbjct: 127 NAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTIYR 178
>gi|340502549|gb|EGR29228.1| rab6-family small gtpase, putative [Ichthyophthirius multifiliis]
Length = 219
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 125/218 (57%), Gaps = 65/218 (29%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
P+ K+K+VFLG+QSVGKTS+I RF+YD+F + Q T+
Sbjct: 9 PVIKYKIVFLGDQSVGKTSIIN-----------------------RFIYDNFTGSEQPTV 45
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
GIDF+ KT+ L+++T+RLQLWDTAGQERF+SLIPSYIRDS A++VYD+TN SF+ +K
Sbjct: 46 GIDFICKTLTLDNKTLRLQLWDTAGQERFKSLIPSYIRDSNAAIIVYDVTNQASFNNLTK 105
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
WI++V+ ERG+D +I ++G
Sbjct: 106 WIEEVKEERGNDALI-----------------------------------------FVLG 124
Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 227
NK DL D R+VS EE +++ K+ N+ E SAK+G N+
Sbjct: 125 NKADLED-RKVSAEECQQQLKQFNLKLQEVSAKSGQNI 161
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 94/124 (75%), Gaps = 1/124 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K +RLQLWDTAGQERF+SLIPSYIRDS A++VYD+TN SF+ +KWI++V+ ERG+D
Sbjct: 59 KTLRLQLWDTAGQERFKSLIPSYIRDSNAAIIVYDVTNQASFNNLTKWIEEVKEERGNDA 118
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+I ++GNK DL D R+VS EE +++ K+ N+ E SAK+G N+ F+++A +L G S
Sbjct: 119 LIFVLGNKADLED-RKVSAEECQQQLKQFNLKLQEVSAKSGQNIGTFFKQLAQSLSGGQS 177
Query: 348 TENK 351
EN+
Sbjct: 178 NENQ 181
>gi|71031448|ref|XP_765366.1| hypothetical protein [Theileria parva strain Muguga]
gi|68352322|gb|EAN33083.1| GTP-binding protein rab6, putative [Theileria parva]
Length = 222
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 129/244 (52%), Gaps = 68/244 (27%)
Query: 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL 74
K+V LGEQS GKTS++T RF+YD + Y ATIGIDFL
Sbjct: 16 KIVLLGEQSAGKTSIVT-----------------------RFVYDHYIPAYAATIGIDFL 52
Query: 75 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134
SK + + +T+RLQLWDTAGQERFRSL+PSYIRDS+ A+VVYDITN SF +T +WI D+
Sbjct: 53 SKVVTVNQKTMRLQLWDTAGQERFRSLMPSYIRDSSSAIVVYDITNRESFDRTRQWIKDI 112
Query: 135 RTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL 194
+ RG +I ++VGNKTDL
Sbjct: 113 KDMRGDKAVI-----------------------------------------VVVGNKTDL 131
Query: 195 SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDS 254
DKR VS EEG+ A E+N F ETSAK G NV+ +L+ E +++ P + D
Sbjct: 132 LDKRTVSFEEGQSLANEMNCFFRETSAKNGDNVQ----ELFTLVATELLKTIEPEPVSDK 187
Query: 255 TVAV 258
V +
Sbjct: 188 LVDI 191
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/130 (59%), Positives = 95/130 (73%), Gaps = 2/130 (1%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N K +RLQLWDTAGQERFRSL+PSYIRDS+ A+VVYDITN SF +T +WI D++ RG
Sbjct: 59 NQKTMRLQLWDTAGQERFRSLMPSYIRDSSSAIVVYDITNRESFDRTRQWIKDIKDMRGD 118
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
+I++VGNKTDL DKR VS EEG+ A E+N F ETSAK G NV++LF VA L +
Sbjct: 119 KAVIVVVGNKTDLLDKRTVSFEEGQSLANEMNCFFRETSAKNGDNVQELFTLVATEL--L 176
Query: 346 DSTENKPPED 355
+ E +P D
Sbjct: 177 KTIEPEPVSD 186
>gi|84994386|ref|XP_951915.1| small GTP-binding protein, Rab family [Theileria annulata strain
Ankara]
gi|65302076|emb|CAI74183.1| small GTP-binding protein, Rab family, putative [Theileria
annulata]
Length = 222
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 129/244 (52%), Gaps = 68/244 (27%)
Query: 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL 74
K+V LGEQS GKTS++T RF+YD + Y ATIGIDFL
Sbjct: 16 KIVLLGEQSAGKTSIVT-----------------------RFVYDHYIPAYAATIGIDFL 52
Query: 75 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134
SK + + +T+RLQLWDTAGQERFRSL+PSYIRDS+ A+VVYDITN SF +T +WI D+
Sbjct: 53 SKVVTVNQKTMRLQLWDTAGQERFRSLMPSYIRDSSSAIVVYDITNRESFDRTRQWIKDI 112
Query: 135 RTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL 194
+ RG +I+ +VGNKTDL
Sbjct: 113 KDMRGDKAVIV-----------------------------------------VVGNKTDL 131
Query: 195 SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDS 254
DKR VS EEG+ A E+N F ETSAK G NV+ +L+ E +++ P + D
Sbjct: 132 LDKRTVSFEEGQSLANEMNCFFRETSAKNGDNVQ----ELFTLVATELLKTIEPEPVSDK 187
Query: 255 TVAV 258
V +
Sbjct: 188 LVDI 191
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/130 (59%), Positives = 95/130 (73%), Gaps = 2/130 (1%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N K +RLQLWDTAGQERFRSL+PSYIRDS+ A+VVYDITN SF +T +WI D++ RG
Sbjct: 59 NQKTMRLQLWDTAGQERFRSLMPSYIRDSSSAIVVYDITNRESFDRTRQWIKDIKDMRGD 118
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
+I++VGNKTDL DKR VS EEG+ A E+N F ETSAK G NV++LF VA L +
Sbjct: 119 KAVIVVVGNKTDLLDKRTVSFEEGQSLANEMNCFFRETSAKNGDNVQELFTLVATEL--L 176
Query: 346 DSTENKPPED 355
+ E +P D
Sbjct: 177 KTIEPEPVSD 186
>gi|74833811|emb|CAI39365.1| rab_A32 [Paramecium tetraurelia]
Length = 215
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/229 (41%), Positives = 127/229 (55%), Gaps = 65/229 (28%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+S + KFK+VF+G Q+VGKTS+I RF+Y+
Sbjct: 1 MSTSANKSKAFAKFKIVFIGNQAVGKTSIIA-----------------------RFVYEQ 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
++Q TIGIDFLSK + +E++TVRLQLWDTAGQERFRSLIPSYIRDS AV+ YD++N
Sbjct: 38 IPQSHQPTIGIDFLSKCIQVENKTVRLQLWDTAGQERFRSLIPSYIRDSHAAVLCYDVSN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
A SF W++ VR ERGSDV VG
Sbjct: 98 AQSFADIKSWLEYVREERGSDV----VG-------------------------------- 121
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 229
+L+ NK D+ ++R V+T+EGE+ AKE +++ E SAK G NV+Q
Sbjct: 122 -----VLIANKIDI-EERVVTTQEGEKLAKEQELLYYEVSAKEGTNVQQ 164
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/125 (55%), Positives = 91/125 (72%), Gaps = 1/125 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K VRLQLWDTAGQERFRSLIPSYIRDS AV+ YD++NA SF W++ VR ERGSDV
Sbjct: 60 KTVRLQLWDTAGQERFRSLIPSYIRDSHAAVLCYDVSNAQSFADIKSWLEYVREERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+ +L+ NK D+ ++R V+T+EGE+ AKE +++ E SAK G NV+Q F+ +A L G
Sbjct: 120 VGVLIANKIDI-EERVVTTQEGEKLAKEQELLYYEVSAKEGTNVQQTFKNLALKLLGPIQ 178
Query: 348 TENKP 352
++P
Sbjct: 179 DVDQP 183
>gi|145477535|ref|XP_001424790.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124391856|emb|CAK57392.1| unnamed protein product [Paramecium tetraurelia]
Length = 222
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/229 (41%), Positives = 127/229 (55%), Gaps = 65/229 (28%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+S + KFK+VF+G Q+VGKTS+I RF+Y+
Sbjct: 1 MSTSANKSKAFAKFKIVFIGNQAVGKTSIIA-----------------------RFVYEQ 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
++Q TIGIDFLSK + +E++TVRLQLWDTAGQERFRSLIPSYIRDS AV+ YD++N
Sbjct: 38 IPQSHQPTIGIDFLSKCIQVENKTVRLQLWDTAGQERFRSLIPSYIRDSHAAVLCYDVSN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
A SF W++ VR ERGSDV VG
Sbjct: 98 AQSFADIKSWLEYVREERGSDV----VG-------------------------------- 121
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 229
+L+ NK D+ ++R V+T+EGE+ AKE +++ E SAK G NV+Q
Sbjct: 122 -----VLIANKIDI-EERVVTTQEGEKLAKEQELLYYEVSAKEGTNVQQ 164
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/125 (55%), Positives = 91/125 (72%), Gaps = 1/125 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K VRLQLWDTAGQERFRSLIPSYIRDS AV+ YD++NA SF W++ VR ERGSDV
Sbjct: 60 KTVRLQLWDTAGQERFRSLIPSYIRDSHAAVLCYDVSNAQSFADIKSWLEYVREERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+ +L+ NK D+ ++R V+T+EGE+ AKE +++ E SAK G NV+Q F+ +A L G
Sbjct: 120 VGVLIANKIDI-EERVVTTQEGEKLAKEQELLYYEVSAKEGTNVQQTFKNLALKLLGPIQ 178
Query: 348 TENKP 352
++P
Sbjct: 179 DVDQP 183
>gi|145488520|ref|XP_001430264.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74833736|emb|CAI39339.1| rab_B32 [Paramecium tetraurelia]
gi|124397360|emb|CAK62866.1| unnamed protein product [Paramecium tetraurelia]
Length = 216
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/229 (41%), Positives = 126/229 (55%), Gaps = 65/229 (28%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+S + KFK+VF+G Q+VGKTS+I RF+Y+
Sbjct: 1 MSTSANKSKAFAKFKIVFIGNQAVGKTSIIA-----------------------RFVYEQ 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
+Q TIGIDFLSK + ++++TVRLQLWDTAGQERFRSLIPSYIRDS AV+ YD++N
Sbjct: 38 IPEQHQPTIGIDFLSKCIQVDNKTVRLQLWDTAGQERFRSLIPSYIRDSHAAVLCYDVSN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
A SF W+D VR ERGSDV VG
Sbjct: 98 AQSFADIKAWLDYVREERGSDV----VG-------------------------------- 121
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 229
+L+ NK D+ D R V+T+EGE+ A+E ++++ E SAK G NV+Q
Sbjct: 122 -----VLIANKIDIKD-RVVTTQEGEKLAQEQDLLYYEVSAKEGTNVQQ 164
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 69/117 (58%), Positives = 88/117 (75%), Gaps = 1/117 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K VRLQLWDTAGQERFRSLIPSYIRDS AV+ YD++NA SF W+D VR ERGSDV
Sbjct: 60 KTVRLQLWDTAGQERFRSLIPSYIRDSHAAVLCYDVSNAQSFADIKAWLDYVREERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
+ +L+ NK D+ D R V+T+EGE+ A+E ++++ E SAK G NV+Q F+ +A L G
Sbjct: 120 VGVLIANKIDIKD-RVVTTQEGEKLAQEQDLLYYEVSAKEGTNVQQTFKNLALKLLG 175
>gi|146413158|ref|XP_001482550.1| hypothetical protein PGUG_05570 [Meyerozyma guilliermondii ATCC
6260]
Length = 180
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 105/174 (60%), Gaps = 43/174 (24%)
Query: 57 MYDSFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVV 115
MYD+FD+ Y ATIGIDFL KTMYLED RT+RLQLWDTAGQERFRSLIPSYIRDS VAVV
Sbjct: 1 MYDTFDDQYAATIGIDFLLKTMYLEDNRTIRLQLWDTAGQERFRSLIPSYIRDSHVAVVC 60
Query: 116 YDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDV 175
YDITN SF KWI+DVR ERG D II+L
Sbjct: 61 YDITNKKSFQNLEKWINDVRLERGDDAIIVL----------------------------- 91
Query: 176 RTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF-IETSAKAGYNVK 228
VGNK DL +KRQV+ EE E K++ F IETS KA +NVK
Sbjct: 92 ------------VGNKLDLKNKRQVTAEECEELHKKVGSKFYIETSTKANHNVK 133
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 79/133 (59%), Positives = 94/133 (70%), Gaps = 8/133 (6%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
L M++E + + +RLQLWDTAGQERFRSLIPSYIRDS VAVV YDITN SF
Sbjct: 19 LKTMYLEDN-------RTIRLQLWDTAGQERFRSLIPSYIRDSHVAVVCYDITNKKSFQN 71
Query: 272 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF-IETSAKAGYN 330
KWI+DVR ERG D II+LVGNK DL +KRQV+ EE E K++ F IETS KA +N
Sbjct: 72 LEKWINDVRLERGDDAIIVLVGNKLDLKNKRQVTAEECEELHKKVGSKFYIETSTKANHN 131
Query: 331 VKQLFRRVAAALP 343
VK LF+++ LP
Sbjct: 132 VKLLFKKIGQCLP 144
>gi|260950339|ref|XP_002619466.1| hypothetical protein CLUG_00625 [Clavispora lusitaniae ATCC 42720]
gi|238847038|gb|EEQ36502.1| hypothetical protein CLUG_00625 [Clavispora lusitaniae ATCC 42720]
Length = 172
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/174 (52%), Positives = 108/174 (62%), Gaps = 43/174 (24%)
Query: 57 MYDSFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVV 115
MYD+FD+ Y ATIGIDFLSKTMYLED +TVRLQLWDTAGQERFRSLIPSYIRDS VAV+
Sbjct: 1 MYDTFDDQYAATIGIDFLSKTMYLEDNKTVRLQLWDTAGQERFRSLIPSYIRDSHVAVIC 60
Query: 116 YDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDV 175
YDIT+ SF +KW++DVR ERG +VI+++
Sbjct: 61 YDITSKKSFDSLAKWVNDVRMERGEEVIVVI----------------------------- 91
Query: 176 RTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF-IETSAKAGYNVK 228
VGNK+DLS KRQVS E+ E K + F IETS KA +NVK
Sbjct: 92 ------------VGNKSDLSAKRQVSAEDAEAFCKSVGGKFVIETSTKANHNVK 133
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 80/130 (61%), Positives = 97/130 (74%), Gaps = 3/130 (2%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K VRLQLWDTAGQERFRSLIPSYIRDS VAV+ YDIT+ SF +KW++DVR ERG +V
Sbjct: 28 KTVRLQLWDTAGQERFRSLIPSYIRDSHVAVICYDITSKKSFDSLAKWVNDVRMERGEEV 87
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF-IETSAKAGYNVKQLFRRVAAALPGM- 345
I+++VGNK+DLS KRQVS E+ E K + F IETS KA +NVK LF+R+AA LP
Sbjct: 88 IVVIVGNKSDLSAKRQVSAEDAEAFCKSVGGKFVIETSTKANHNVKLLFKRIAACLPEFS 147
Query: 346 -DSTENKPPE 354
+ E + PE
Sbjct: 148 ESAAEAEQPE 157
>gi|449691705|ref|XP_002170841.2| PREDICTED: ras-related protein Rab-6A-like [Hydra magnipapillata]
Length = 175
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/178 (50%), Positives = 113/178 (63%), Gaps = 42/178 (23%)
Query: 57 MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY 116
MYDSFD+TYQATIGIDFLSKT+ + ++ + LQ+WDTAG ERFRSLIP+YIRD + AV VY
Sbjct: 1 MYDSFDSTYQATIGIDFLSKTLVVGEKKIHLQIWDTAGTERFRSLIPNYIRDLSAAVAVY 60
Query: 117 DITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVR 176
DIT+ +SF Q + IDDVR ER SDV+I+
Sbjct: 61 DITSVSSFDQVERSIDDVRKER-SDVVIV------------------------------- 88
Query: 177 TERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
L GNKTDL++KR+VS E+G R+AKEL V F+E SAK G+NVK++ L +
Sbjct: 89 ----------LCGNKTDLTEKRRVSMEQGARRAKELGVTFMEASAKTGHNVKKLFLHI 136
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/115 (64%), Positives = 94/115 (81%), Gaps = 1/115 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K++ LQ+WDTAG ERFRSLIP+YIRD + AV VYDIT+ +SF Q + IDDVR ER SDV
Sbjct: 27 KKIHLQIWDTAGTERFRSLIPNYIRDLSAAVAVYDITSVSSFDQVERSIDDVRKER-SDV 85
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+I+L GNKTDL++KR+VS E+G R+AKEL V F+E SAK G+NVK+LF +A+AL
Sbjct: 86 VIVLCGNKTDLTEKRRVSMEQGARRAKELGVTFMEASAKTGHNVKKLFLHIASAL 140
>gi|313234682|emb|CBY10635.1| unnamed protein product [Oikopleura dioica]
Length = 148
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/171 (52%), Positives = 103/171 (60%), Gaps = 41/171 (23%)
Query: 57 MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY 116
MYDSFD YQATIGIDFLSKT+ ++D TVRLQLWDTAGQERFRSLIPSYIRDS V ++VY
Sbjct: 1 MYDSFDQHYQATIGIDFLSKTLQIDDNTVRLQLWDTAGQERFRSLIPSYIRDSNVGIIVY 60
Query: 117 DITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVR 176
++T SF + WI DV+ +RG DVII L
Sbjct: 61 NVTEEKSFAKIDTWIKDVKDQRGDDVIIFL------------------------------ 90
Query: 177 TERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 227
VGNKTDL KR+V E+KA E N+ FIETSAK+GYNV
Sbjct: 91 -----------VGNKTDLEAKRKVDISVAEKKAAEHNIHFIETSAKSGYNV 130
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/117 (63%), Positives = 90/117 (76%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
VRLQLWDTAGQERFRSLIPSYIRDS V ++VY++T SF + WI DV+ +RG DVII
Sbjct: 29 VRLQLWDTAGQERFRSLIPSYIRDSNVGIIVYNVTEEKSFAKIDTWIKDVKDQRGDDVII 88
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
LVGNKTDL KR+V E+KA E N+ FIETSAK+GYNV LF+R+A A+ G++
Sbjct: 89 FLVGNKTDLEAKRKVDISVAEKKAAEHNIHFIETSAKSGYNVNALFQRIARAITGLN 145
>gi|74831371|emb|CAI39291.1| rab_C69 [Paramecium tetraurelia]
Length = 221
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 124/223 (55%), Gaps = 67/223 (30%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
P++K+K+VFLG+Q+VGKTS+I RF++D+F Q T+
Sbjct: 9 PMQKYKIVFLGDQAVGKTSIIN-----------------------RFIFDNFTGNEQPTV 45
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
GIDF+SKT+ +++++VRLQLWDTAGQERFRSLIPSYIRDS A++ +DITN SF +
Sbjct: 46 GIDFISKTLQVDNKSVRLQLWDTAGQERFRSLIPSYIRDSQAAIICFDITNEKSFQNLPR 105
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
WI+DV+ ERG +V+I ++G
Sbjct: 106 WIEDVKEERGDEVLI-----------------------------------------YILG 124
Query: 190 NKTDLSDKRQVSTEEGERKAK---ELNVMFIETSAKAGYNVKQ 229
NK DL ++RQ+ T++ E KAK EL F E SAK+ NV +
Sbjct: 125 NKIDLENERQIPTKQAEDKAKVFSELGAQFQEVSAKSAINVAE 167
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/120 (55%), Positives = 87/120 (72%), Gaps = 3/120 (2%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K VRLQLWDTAGQERFRSLIPSYIRDS A++ +DITN SF +WI+DV+ ERG +V
Sbjct: 59 KSVRLQLWDTAGQERFRSLIPSYIRDSQAAIICFDITNEKSFQNLPRWIEDVKEERGDEV 118
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAK---ELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
+I ++GNK DL ++RQ+ T++ E KAK EL F E SAK+ NV + F++++ L G
Sbjct: 119 LIYILGNKIDLENERQIPTKQAEDKAKVFSELGAQFQEVSAKSAINVAEFFKKLSYDLLG 178
>gi|2865392|gb|AAC32735.1| GTP binding protein [Plasmodium falciparum]
Length = 116
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/131 (63%), Positives = 94/131 (71%), Gaps = 23/131 (17%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K+KLVFLGEQ+VGKTS+I TRFMYD+FDN YQ+TIG
Sbjct: 9 LNKYKLVFLGEQAVGKTSII-----------------------TRFMYDTFDNNYQSTIG 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKT+YL++ VRLQLWDTAGQERFRSLIPSYIRDS A+VVYDITN SF T+KW
Sbjct: 46 IDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKW 105
Query: 131 IDDVRTERGSD 141
I D+ ERG D
Sbjct: 106 IQDILNERGKD 116
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/57 (77%), Positives = 47/57 (82%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD 286
VRLQLWDTAGQERFRSLIPSYIRDS A+VVYDITN SF T+KWI D+ ERG D
Sbjct: 60 VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKD 116
>gi|294888433|ref|XP_002772463.1| RAB6 protein, putative [Perkinsus marinus ATCC 50983]
gi|239876689|gb|EER04279.1| RAB6 protein, putative [Perkinsus marinus ATCC 50983]
Length = 215
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 131/233 (56%), Gaps = 63/233 (27%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
P+ K++FLG+QSVGKTS+I TRF+Y +FD YQATI
Sbjct: 15 PISSHKVIFLGDQSVGKTSII-----------------------TRFLYGAFDTHYQATI 51
Query: 70 GIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
GIDF++K + L+D R ++LQLWDTAGQERFRSLIP+Y+RD+ VVV+D+++ SF+
Sbjct: 52 GIDFVAKVITLDDGRMIKLQLWDTAGQERFRSLIPAYLRDTAACVVVFDLSSKESFNSVR 111
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
W+D VR E+G++ G +E I+LV
Sbjct: 112 SWVDQVRDEKGTN------GGVE---------------------------------IVLV 132
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQE 241
GNK D++D RQVS EE A+EL + + ETSAK+G ++ ++ ++ + +E
Sbjct: 133 GNKADMADLRQVSNEEASALAEELGLKYFETSAKSGIDIDEIFTEIAKSIPEE 185
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 89/121 (73%), Gaps = 2/121 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
+ ++LQLWDTAGQERFRSLIP+Y+RD+ VVV+D+++ SF+ W+D VR E+G++
Sbjct: 66 RMIKLQLWDTAGQERFRSLIPAYLRDTAACVVVFDLSSKESFNSVRSWVDQVRDEKGTNG 125
Query: 287 -VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
V I+LVGNK D++D RQVS EE A+EL + + ETSAK+G ++ ++F +A ++P
Sbjct: 126 GVEIVLVGNKADMADLRQVSNEEASALAEELGLKYFETSAKSGIDIDEIFTEIAKSIPEE 185
Query: 346 D 346
D
Sbjct: 186 D 186
>gi|223941194|dbj|BAH23089.1| small GTP binding protein Rab6 [Babesia bigemina]
Length = 217
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 97/260 (37%), Positives = 134/260 (51%), Gaps = 68/260 (26%)
Query: 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
++ K+V LGEQ+ GKTS++T RF+YD F Y ATIGI
Sbjct: 19 QRIKIVLLGEQNTGKTSIVT-----------------------RFVYDHFVPAYAATIGI 55
Query: 72 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
DFLSK + + +T+RLQLWDTAGQERFR+L+PSYIRDS+ A+VVYDIT+ SF + WI
Sbjct: 56 DFLSKVVTVNGKTMRLQLWDTAGQERFRTLMPSYIRDSSAAIVVYDITSRESFDKVGDWI 115
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
D++ RG +I+L VGNK
Sbjct: 116 KDIKELRGDKAVIVL-----------------------------------------VGNK 134
Query: 192 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI 251
TDL DKR+VS +EGE +AK+ +F ETSAK G N+ L++ E +++ P +
Sbjct: 135 TDLLDKRKVSYDEGEEQAKKFGCLFCETSAKNGDNIN----DLFNPIATELLKNMEPVPV 190
Query: 252 RDSTVAVVVYDITNANSFHQ 271
D + + + S H+
Sbjct: 191 NDKRKFFAPWHMLHVRSTHR 210
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 72/130 (55%), Positives = 92/130 (70%), Gaps = 2/130 (1%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N K +RLQLWDTAGQERFR+L+PSYIRDS+ A+VVYDIT+ SF + WI D++ RG
Sbjct: 65 NGKTMRLQLWDTAGQERFRTLMPSYIRDSSAAIVVYDITSRESFDKVGDWIKDIKELRGD 124
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
+I+LVGNKTDL DKR+VS +EGE +AK+ +F ETSAK G N+ LF +A L +
Sbjct: 125 KAVIVLVGNKTDLLDKRKVSYDEGEEQAKKFGCLFCETSAKNGDNINDLFNPIATEL--L 182
Query: 346 DSTENKPPED 355
+ E P D
Sbjct: 183 KNMEPVPVND 192
>gi|401884254|gb|EJT48423.1| hypothetical protein A1Q1_02555 [Trichosporon asahii var. asahii
CBS 2479]
gi|406695853|gb|EKC99152.1| hypothetical protein A1Q2_06556 [Trichosporon asahii var. asahii
CBS 8904]
Length = 202
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 119/222 (53%), Gaps = 78/222 (35%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+PL+KFKLVFLGEQSVGKTSLITRF+ SL + D+ T
Sbjct: 19 SPLKKFKLVFLGEQSVGKTSLITRFV----------------SLPGQARADTPARAPTLT 62
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
GIDFLSKTMYLEDRTVRLQLWDTAGQ T+ NSF T+
Sbjct: 63 AGIDFLSKTMYLEDRTVRLQLWDTAGQL---------------------TTDRNSFLNTT 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KW+DDVR ERG DVII+L V
Sbjct: 102 KWVDDVRNERGDDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL+DKRQV+ E+ +++AKEL VM IETSAKAG+NVK +
Sbjct: 121 GNKTDLNDKRQVTPEDLDKRAKELGVMSIETSAKAGHNVKAL 162
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/117 (57%), Positives = 82/117 (70%), Gaps = 21/117 (17%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQ T+ NSF T+KW+DDVR ERG DV
Sbjct: 77 RTVRLQLWDTAGQL---------------------TTDRNSFLNTTKWVDDVRNERGDDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
II+LVGNKTDL+DKRQV+ E+ +++AKEL VM IETSAKAG+NVK LF+++A ALPG
Sbjct: 116 IIVLVGNKTDLNDKRQVTPEDLDKRAKELGVMSIETSAKAGHNVKALFKKIAMALPG 172
>gi|429858023|gb|ELA32859.1| ras small monomeric GTPase [Colletotrichum gloeosporioides Nara
gc5]
Length = 151
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 74/104 (71%), Positives = 93/104 (89%)
Query: 246 LIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVS 305
LIPSYIRDS+VAV+VYDI+NA SF T KWIDDVR ERG+DVII+LVGNKTDL+DKR+V+
Sbjct: 22 LIPSYIRDSSVAVLVYDISNAKSFQNTKKWIDDVRAERGNDVIIVLVGNKTDLNDKREVT 81
Query: 306 TEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
T++GE +AK+ N+MF+ETSAK G+NVK LF+R+A ALPGM+ T+
Sbjct: 82 TQQGEEEAKKNNLMFVETSAKLGHNVKTLFKRIAQALPGMEGTD 125
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 78/164 (47%), Positives = 95/164 (57%), Gaps = 57/164 (34%)
Query: 65 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 124
YQATIGIDFLSK + T+G LIPSYIRDS+VAV+VYDI+NA S
Sbjct: 2 YQATIGIDFLSKARFPT----------TSG------LIPSYIRDSSVAVLVYDISNAKS- 44
Query: 125 HQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVI 184
F T KWIDDVR ERG+DVI
Sbjct: 45 ----------------------------------------FQNTKKWIDDVRAERGNDVI 64
Query: 185 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
I+LVGNKTDL+DKR+V+T++GE +AK+ N+MF+ETSAK G+NVK
Sbjct: 65 IVLVGNKTDLNDKREVTTQQGEEEAKKNNLMFVETSAKLGHNVK 108
>gi|402594691|gb|EJW88617.1| hypothetical protein WUBG_00471 [Wuchereria bancrofti]
Length = 130
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/86 (88%), Positives = 83/86 (96%)
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323
+ANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL+DKRQVSTEEGERKAKELNVMFIET
Sbjct: 17 ADANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSTEEGERKAKELNVMFIET 76
Query: 324 SAKAGYNVKQLFRRVAAALPGMDSTE 349
SAKAGYNVKQLFRR+A ALPG+++ +
Sbjct: 77 SAKAGYNVKQLFRRIAGALPGIEADQ 102
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/88 (82%), Positives = 77/88 (87%), Gaps = 3/88 (3%)
Query: 145 MLVGSIETNFTHLSF--HHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST 202
M +GS E F+ F ANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL+DKRQVST
Sbjct: 1 MQIGS-EIKFSCNGFTSADANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQVST 59
Query: 203 EEGERKAKELNVMFIETSAKAGYNVKQV 230
EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 60 EEGERKAKELNVMFIETSAKAGYNVKQL 87
>gi|170586192|ref|XP_001897863.1| rab6 [Brugia malayi]
gi|158594258|gb|EDP32842.1| rab6, putative [Brugia malayi]
Length = 130
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/86 (88%), Positives = 83/86 (96%)
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323
+ANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL+DKRQVSTEEGERKAKELNVMFIET
Sbjct: 17 ADANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSTEEGERKAKELNVMFIET 76
Query: 324 SAKAGYNVKQLFRRVAAALPGMDSTE 349
SAKAGYNVKQLFRR+A ALPG+++ +
Sbjct: 77 SAKAGYNVKQLFRRIAGALPGIEADQ 102
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 72/88 (81%), Positives = 77/88 (87%), Gaps = 3/88 (3%)
Query: 145 MLVGSIETNFTHLSF--HHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST 202
M +G+ E F+ F ANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL+DKRQVST
Sbjct: 1 MQIGN-EIKFSCNGFTSADANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQVST 59
Query: 203 EEGERKAKELNVMFIETSAKAGYNVKQV 230
EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 60 EEGERKAKELNVMFIETSAKAGYNVKQL 87
>gi|390339159|ref|XP_003724945.1| PREDICTED: uncharacterized protein LOC100893185 [Strongylocentrotus
purpuratus]
Length = 550
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 152/299 (50%), Gaps = 53/299 (17%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+S + RF +++F Q TI I F K++ L++ V LQ+WDTAGQERFRS+ +Y
Sbjct: 268 VGKSSFVQRFCHNTFTVNTQVTIEIGFHMKSLVLDNTVVSLQIWDTAGQERFRSIPHAYF 327
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + +++YDI+ SF
Sbjct: 328 RKADGVLLLYDISCEKSFLNVQS------------------------------------- 350
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDL-SDKRQVSTEEGERKAKELNVMFIETSAKAGY 225
WI +R E + +IML GNK DL S R+V E + A+E + +FIETSAK G
Sbjct: 351 ----WIASIR-EHDDNAVIMLTGNKEDLASPYREVPREAALKVARENDALFIETSAKNGT 405
Query: 226 NVKQVRLQLWDTAGQ-ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
NV ++ G+ RFRS+ +Y R + +++YDI+ SF WI +R E
Sbjct: 406 NV-------FEAFGRLARFRSIPHAYFRKADGVLLLYDISCEKSFLNVQSWIASIR-EHD 457
Query: 285 SDVIIMLVGNKTDL-SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+ +IML GNK DL S R+V E + A+E N +FIETSAK G NV + F R+A L
Sbjct: 458 DNAVIMLTGNKEDLASPYREVPREAALKVARENNALFIETSAKNGTNVFEAFGRLAREL 516
>gi|340500436|gb|EGR27313.1| Ras family protein, putative [Ichthyophthirius multifiliis]
Length = 201
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 119/226 (52%), Gaps = 68/226 (30%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
K K++FLG+Q VGKT +I RFMYD FD T+G+D
Sbjct: 20 KHKIIFLGDQHVGKTCIIE-----------------------RFMYDVFDEKSHPTVGVD 56
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
FL+KT++++D+T+RLQLWDTAGQERFRSLIPSY+RD+T AV+V+D+TN SF T +WI
Sbjct: 57 FLAKTLHVDDKTIRLQLWDTAGQERFRSLIPSYLRDATCAVIVFDVTNKESFSNTERWIK 116
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
D + RG+ + +LV NK
Sbjct: 117 DYKDNRGA-----------------------------------------EAPCILVANKI 135
Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV----KQVRLQL 234
D +R++S E+GE+KAK + + E SAK G NV K + LQL
Sbjct: 136 DQKLQREISQEDGEKKAKSFEMNYYEISAKTGENVVNMFKSMALQL 181
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/120 (51%), Positives = 84/120 (70%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K +RLQLWDTAGQERFRSLIPSY+RD+T AV+V+D+TN SF T +WI D + RG++
Sbjct: 67 KTIRLQLWDTAGQERFRSLIPSYLRDATCAVIVFDVTNKESFSNTERWIKDYKDNRGAEA 126
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+LV NK D +R++S E+GE+KAK + + E SAK G NV +F+ +A L D+
Sbjct: 127 PCILVANKIDQKLQREISQEDGEKKAKSFEMNYYEISAKTGENVVNMFKSMALQLNPSDN 186
>gi|340501463|gb|EGR28249.1| Ras family protein, putative [Ichthyophthirius multifiliis]
Length = 217
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 92/243 (37%), Positives = 131/243 (53%), Gaps = 67/243 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
M S G + K+K+VFLG+QSVGKTS+I RF+YD+
Sbjct: 1 MQQSAIAGPAVMKYKIVFLGDQSVGKTSIIN-----------------------RFIYDN 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
F + Q T+GIDF+ KT+ L+++T+RLQLWDTAGQERF+SLIPSYIRDS A++VYD+TN
Sbjct: 38 FTGSEQPTVGIDFICKTIQLDNKTLRLQLWDTAGQERFKSLIPSYIRDSNAAIIVYDVTN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
+SF+ SKWI++V+ ERG+D +I
Sbjct: 98 QSSFNNLSKWIEEVKEERGNDALI------------------------------------ 121
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWD--TA 238
++GNK+DL D + EE + K+ N+ + SAK+G N+ QL + +
Sbjct: 122 -----FVLGNKSDLEDTKN-QQEEFNQSLKQFNLSVQKVSAKSGNNIGNFFKQLAEALSG 175
Query: 239 GQE 241
GQ+
Sbjct: 176 GQQ 178
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/124 (51%), Positives = 90/124 (72%), Gaps = 1/124 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K +RLQLWDTAGQERF+SLIPSYIRDS A++VYD+TN +SF+ SKWI++V+ ERG+D
Sbjct: 60 KTLRLQLWDTAGQERFKSLIPSYIRDSNAAIIVYDVTNQSSFNNLSKWIEEVKEERGNDA 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+I ++GNK+DL D + EE + K+ N+ + SAK+G N+ F+++A AL G
Sbjct: 120 LIFVLGNKSDLEDTKN-QQEEFNQSLKQFNLSVQKVSAKSGNNIGNFFKQLAEALSGGQQ 178
Query: 348 TENK 351
+NK
Sbjct: 179 IDNK 182
>gi|358254546|dbj|GAA55785.1| Ras-related protein Rab-6 [Clonorchis sinensis]
Length = 493
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 119/348 (34%), Positives = 173/348 (49%), Gaps = 65/348 (18%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
S+ + + ++K K VFLGEQ+ G + + IVGKT +I RFM+D FD
Sbjct: 2 SNCPYDHHIQKSKCVFLGEQN-GIEFFVMLLL-----------IVGKTCIILRFMHDVFD 49
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
TYQATIGIDFLSKT+ L+ ++VRLQLWDTAGQER SLIP+YIRDS V++VVYD+T
Sbjct: 50 QTYQATIGIDFLSKTLCLDQKSVRLQLWDTAGQER--SLIPNYIRDSAVSIVVYDVT--- 104
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
+ N T +SF +T +WI +R ER +
Sbjct: 105 ------------------------CRRVSLNVTRNILQPRDSFDRTIEWIRKIRDERDTS 140
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQER 242
+I LVGNK DL ++R + R++ F++ S ++Q R E
Sbjct: 141 SLIFLVGNKVDLEEERNFAFIYIYRRS------FLKDSVNRP--IRQHRRASAKIVQSEE 192
Query: 243 FRSLIPSYIRDST-----VAVVVYDITNA---NSFHQTSKWIDDVRTE--------RGSD 286
+ +I S RD T + + VY + N F S ++D + + SD
Sbjct: 193 LQRIITSGARDVTNKRMRIPLRVYCTWSPGILNGFKDRSTFLDVSKKKPSQAMGLSSASD 252
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 334
++ M N T + ++TEEG AK+ + F+ETSAK+ V++
Sbjct: 253 LLSMTHPNHTGWKWRTVITTEEGTELAKKEGIFFLETSAKSNIGVQKC 300
>gi|29841343|gb|AAP06375.1| similar to NM_130025 putative small GTP-binding protein in
Arabidopsis thaliana [Schistosoma japonicum]
Length = 211
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/230 (41%), Positives = 125/230 (54%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
M SS + + K K VFLG+ VGKT +I RFMY++
Sbjct: 1 MDSSANSEYSVTKAKCVFLGDYGVGKTCIIL-----------------------RFMYET 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FD Y+ATIGIDF+SKT+ +++VRLQLWDTAGQERFRSLIPSYI+DS VA+VVYD+TN
Sbjct: 38 FDRAYKATIGIDFVSKTLCFNEKSVRLQLWDTAGQERFRSLIPSYIKDSFVAIVVYDVTN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
+SF + S WI ++R ER S ++ L
Sbjct: 98 RDSFIKASDWIKEIRAERSSKTLVFL---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNK DL D+R VS EE KA++ N+ FIETSAK + ++++
Sbjct: 124 -------VGNKVDLEDERVVSAEEAAEKAEKENLFFIETSAKTDFQIQKL 166
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 89/123 (72%)
Query: 220 SAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 279
S +N K VRLQLWDTAGQERFRSLIPSYI+DS VA+VVYD+TN +SF + S WI ++
Sbjct: 52 SKTLCFNEKSVRLQLWDTAGQERFRSLIPSYIKDSFVAIVVYDVTNRDSFIKASDWIKEI 111
Query: 280 RTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
R ER S ++ LVGNK DL D+R VS EE KA++ N+ FIETSAK + +++LF V
Sbjct: 112 RAERSSKTLVFLVGNKVDLEDERVVSAEEAAEKAEKENLFFIETSAKTDFQIQKLFDEVV 171
Query: 340 AAL 342
+
Sbjct: 172 KEI 174
>gi|340506147|gb|EGR32356.1| Ras family protein, putative [Ichthyophthirius multifiliis]
Length = 248
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 122/236 (51%), Gaps = 72/236 (30%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
K K++FLG+Q VGKT +I RFMYD FD T+G+D
Sbjct: 21 KHKIIFLGDQ-----------------------YVGKTCIIERFMYDVFDEKSHPTVGVD 57
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
FL+K++ L+D+ +RLQLWDTAGQERFRSLIPSY+RD+T A++V+D+TN SF+ +W+
Sbjct: 58 FLAKSIKLDDKNIRLQLWDTAGQERFRSLIPSYLRDATCAIIVFDVTNKESFNNIERWLK 117
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
D R RG+D +L +GNK
Sbjct: 118 DYRDNRGNDASCVL-----------------------------------------IGNKI 136
Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP 248
D+ R++S ++ E K K LN+++ + SAK G NV+ + L + +SLIP
Sbjct: 137 DMKQIREISQQQAEEKGKMLNMLYFDISAKTGENVQNMFLTMA--------KSLIP 184
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 84/115 (73%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K +RLQLWDTAGQERFRSLIPSY+RD+T A++V+D+TN SF+ +W+ D R RG+D
Sbjct: 68 KNIRLQLWDTAGQERFRSLIPSYLRDATCAIIVFDVTNKESFNNIERWLKDYRDNRGNDA 127
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+L+GNK D+ R++S ++ E K K LN+++ + SAK G NV+ +F +A +L
Sbjct: 128 SCVLIGNKIDMKQIREISQQQAEEKGKMLNMLYFDISAKTGENVQNMFLTMAKSL 182
>gi|256053248|ref|XP_002570111.1| rab6 [Schistosoma mansoni]
gi|350646524|emb|CCD58834.1| rab6, putative [Schistosoma mansoni]
Length = 196
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 89/199 (44%), Positives = 119/199 (59%), Gaps = 45/199 (22%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKTS+I RFM+D+FD Y ATIGIDF+SKT+ ++++RLQLWDTAGQERF SLIPSYI+
Sbjct: 25 GKTSIILRFMHDTFDPAYHATIGIDFVSKTLCFNEKSIRLQLWDTAGQERFSSLIPSYIK 84
Query: 108 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ 167
DS+VA+VVYD+T+ SF + KWI ++RTER S +I L
Sbjct: 85 DSSVAIVVYDVTSRESFVRADKWISEIRTERPSKTLIFL--------------------- 123
Query: 168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 227
VGNK DL DKR V+TEE +KA++ N+ F+ETSAK + +
Sbjct: 124 --------------------VGNKVDLEDKRVVTTEEAAKKAEKENLFFVETSAKTDFQI 163
Query: 228 KQVRLQLWDTAGQERFRSL 246
+L+D E +S+
Sbjct: 164 N----KLFDEVVMEIVKSI 178
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 69/124 (55%), Positives = 90/124 (72%)
Query: 219 TSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 278
S +N K +RLQLWDTAGQERF SLIPSYI+DS+VA+VVYD+T+ SF + KWI +
Sbjct: 51 VSKTLCFNEKSIRLQLWDTAGQERFSSLIPSYIKDSSVAIVVYDVTSRESFVRADKWISE 110
Query: 279 VRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
+RTER S +I LVGNK DL DKR V+TEE +KA++ N+ F+ETSAK + + +LF V
Sbjct: 111 IRTERPSKTLIFLVGNKVDLEDKRVVTTEEAAKKAEKENLFFVETSAKTDFQINKLFDEV 170
Query: 339 AAAL 342
+
Sbjct: 171 VMEI 174
>gi|74834309|emb|CAI44512.1| rab_C15 [Paramecium tetraurelia]
Length = 217
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/125 (60%), Positives = 93/125 (74%), Gaps = 1/125 (0%)
Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
Y + +RLQLWDTAGQERFRSLIPSYIRDS VAVV YD+ SF ++WI DVR ERG
Sbjct: 60 YEDRTIRLQLWDTAGQERFRSLIPSYIRDSAVAVVCYDVEVKTSFASITRWISDVRLERG 119
Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
+DVII +V NK D+ D R +STEEG AKE + FIE SAK G NV+ LF+++AA LPG
Sbjct: 120 NDVIIFIVANKIDV-DNRVISTEEGANLAKECDAHFIEVSAKTGNNVELLFKQIAATLPG 178
Query: 345 MDSTE 349
++++
Sbjct: 179 TETSQ 183
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/177 (48%), Positives = 103/177 (58%), Gaps = 42/177 (23%)
Query: 52 LITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV 111
L+ R M + + T+GIDF+SKT+Y EDRT+RLQLWDTAGQERFRSLIPSYIRDS V
Sbjct: 32 LMGRIMQEKVKLQNKPTVGIDFISKTLYYEDRTIRLQLWDTAGQERFRSLIPSYIRDSAV 91
Query: 112 AVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW 171
AVV YD+ +V+T SF ++W
Sbjct: 92 AVVCYDV--------------EVKT---------------------------SFASITRW 110
Query: 172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
I DVR ERG+DVII +V NK D+ D R +STEEG AKE + FIE SAK G NV+
Sbjct: 111 ISDVRLERGNDVIIFIVANKIDV-DNRVISTEEGANLAKECDAHFIEVSAKTGNNVE 166
>gi|146184753|ref|XP_001030061.2| Ras family protein [Tetrahymena thermophila]
gi|146142676|gb|EAR82398.2| Ras family protein [Tetrahymena thermophila SB210]
gi|307777804|dbj|BAJ21298.1| Rab-family small GTPase Rab6D [Tetrahymena thermophila]
Length = 265
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/225 (38%), Positives = 116/225 (51%), Gaps = 65/225 (28%)
Query: 4 SGDFGNPLR-KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
+ +F N R K K++FLG+Q VGKT +I RFMYD FD
Sbjct: 10 TSNFSNTSRVKHKIIFLGDQHVGKTCIIE-----------------------RFMYDVFD 46
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
T+G+DFL+KT++++D+++RL LWDTAGQERFRSLIPSY+RD+T AV+V+D+TN
Sbjct: 47 EKPHPTVGVDFLAKTLHIDDKSIRLSLWDTAGQERFRSLIPSYLRDATCAVIVFDVTNKE 106
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF +WI D + RGS +
Sbjct: 107 SFSNVDRWIKDYKDNRGS-----------------------------------------E 125
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 227
+LV NK DL R+V + E+KAKE N+ F E SAK G NV
Sbjct: 126 APCVLVANKIDLKLTREVQLADLEKKAKENNMKFYEISAKTGENV 170
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 86/128 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K +RL LWDTAGQERFRSLIPSY+RD+T AV+V+D+TN SF +WI D + RGS+
Sbjct: 67 KSIRLSLWDTAGQERFRSLIPSYLRDATCAVIVFDVTNKESFSNVDRWIKDYKDNRGSEA 126
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+LV NK DL R+V + E+KAKE N+ F E SAK G NV +F+ +A +L +++
Sbjct: 127 PCVLVANKIDLKLTREVQLADLEKKAKENNMKFYEISAKTGENVANMFKDMAISLQPVEN 186
Query: 348 TENKPPED 355
+ P D
Sbjct: 187 SILSPNAD 194
>gi|340052328|emb|CCC46604.1| putative small GTP-binding protein RAB6 [Trypanosoma vivax Y486]
Length = 223
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 89/230 (38%), Positives = 120/230 (52%), Gaps = 64/230 (27%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G ++K+V LG+QSVGKTS+I TRF+ +F+ +Y A
Sbjct: 5 GGTFLRYKVVLLGDQSVGKTSII-----------------------TRFINGTFEESYHA 41
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIGIDF SKT+ L+ TVRL +WDTAGQERFR+LIP YIRDS +VVYD+ + SF T
Sbjct: 42 TIGIDFFSKTLLLDGVTVRLHVWDTAGQERFRALIPGYIRDSAATLVVYDVASRLSFLNT 101
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
KW+DDVR RG++ II+L
Sbjct: 102 FKWVDDVRALRGNETIIVL----------------------------------------- 120
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDT 237
VGNK+D ++R+V+ EE + KA E +MF E SA G V + ++ +T
Sbjct: 121 VGNKSDEHERREVTAEEAQEKADEYGIMFTEVSAMLGTGVGALFKKVAET 170
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/113 (55%), Positives = 81/113 (71%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
VRL +WDTAGQERFR+LIP YIRDS +VVYD+ + SF T KW+DDVR RG++ II
Sbjct: 59 VRLHVWDTAGQERFRALIPGYIRDSAATLVVYDVASRLSFLNTFKWVDDVRALRGNETII 118
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+LVGNK+D ++R+V+ EE + KA E +MF E SA G V LF++VA L
Sbjct: 119 VLVGNKSDEHERREVTAEEAQEKADEYGIMFTEVSAMLGTGVGALFKKVAETL 171
>gi|388500442|gb|AFK38287.1| unknown [Lotus japonicus]
Length = 106
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 85/112 (75%), Gaps = 23/112 (20%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+PL K+KLVFLG+QSVGKTS+I TRFMYD FD TYQAT
Sbjct: 5 SPLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDTTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ +
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVAS 93
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/38 (81%), Positives = 36/38 (94%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 265
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ +
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVAS 93
>gi|324514427|gb|ADY45866.1| GTP-binding protein ryh1 [Ascaris suum]
Length = 226
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 88/232 (37%), Positives = 123/232 (53%), Gaps = 64/232 (27%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K+K+VFLGEQ VGK+S+I T+F+ + Y ATIG
Sbjct: 34 LTKYKIVFLGEQGVGKSSII-----------------------TKFLRNEVAEDYIATIG 70
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDF SK + +E +TVRLQ+WDTAGQERFRSLIPSY+RDS VAV+VYD+++ SF +T +W
Sbjct: 71 IDFFSKNIVVEGKTVRLQIWDTAGQERFRSLIPSYLRDSDVAVIVYDVSSPTSFAKTRQW 130
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
+ V +R D+ I+L VGN
Sbjct: 131 FNYVNRQRAGDIAIIL-----------------------------------------VGN 149
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQER 242
K+DL+DKR++S E GER A N ++ SA G N++++ + + T E+
Sbjct: 150 KSDLTDKRKISYESGERIAAAWNCRHMDVSALTGRNIQELFVFIAGTLAHEK 201
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 85/115 (73%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K VRLQ+WDTAGQERFRSLIPSY+RDS VAV+VYD+++ SF +T +W + V +R D+
Sbjct: 83 KTVRLQIWDTAGQERFRSLIPSYLRDSDVAVIVYDVSSPTSFAKTRQWFNYVNRQRAGDI 142
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
I+LVGNK+DL+DKR++S E GER A N ++ SA G N+++LF +A L
Sbjct: 143 AIILVGNKSDLTDKRKISYESGERIAAAWNCRHMDVSALTGRNIQELFVFIAGTL 197
>gi|224086807|ref|XP_002335184.1| predicted protein [Populus trichocarpa]
gi|222833035|gb|EEE71512.1| predicted protein [Populus trichocarpa]
Length = 96
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 77/115 (66%), Positives = 86/115 (74%), Gaps = 23/115 (20%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+PL K+KLVFLG+QSVGKTS+I TRFMYD FD TYQAT
Sbjct: 5 SPLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDTTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
IGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ + S
Sbjct: 42 IGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASELS 96
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/41 (75%), Positives = 37/41 (90%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 268
+ +RLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ + S
Sbjct: 56 RTIRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASELS 96
>gi|340507324|gb|EGR33304.1| ras small monomeric gtpase, putative [Ichthyophthirius multifiliis]
Length = 189
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 100/139 (71%), Gaps = 23/139 (16%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++K+KLVF+G+QSVGKTS+I RF+YD+F T Q T+G
Sbjct: 10 VKKYKLVFIGDQSVGKTSIIN-----------------------RFIYDNFVGTQQPTVG 46
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDF++KT++L+++T+RLQLWDTAGQERFRSLIPSYIRDS A++ YD+T A SF SKW
Sbjct: 47 IDFVAKTLHLDNKTIRLQLWDTAGQERFRSLIPSYIRDSDAAILTYDVTKAQSFQNLSKW 106
Query: 131 IDDVRTERGSDVIIMLVGS 149
I+ V+ ERG++V+ +L+G+
Sbjct: 107 IEYVKEERGNEVLTILLGN 125
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 75/111 (67%), Gaps = 1/111 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K +RLQLWDTAGQERFRSLIPSYIRDS A++ YD+T A SF SKWI+ V+ ERG++V
Sbjct: 59 KTIRLQLWDTAGQERFRSLIPSYIRDSDAAILTYDVTKAQSFQNLSKWIEYVKEERGNEV 118
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK-QLFRR 337
+ +L+GNK DL + RQ + ++ F+E K+ N + Q F+R
Sbjct: 119 LTILLGNKIDLQENRQKYQLKINKQKIIKQDKFLEKREKSSLNNQVQYFKR 169
>gi|357463333|ref|XP_003601948.1| Ras-related protein Rab-6A [Medicago truncatula]
gi|355490996|gb|AES72199.1| Ras-related protein Rab-6A [Medicago truncatula]
Length = 101
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 84/112 (75%), Gaps = 23/112 (20%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+PL K+KLVFLG+QSVGKTS+I TRFMYD FD TYQAT
Sbjct: 5 SPLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDTTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVAT 93
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/38 (81%), Positives = 35/38 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 265
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVAT 93
>gi|340503282|gb|EGR29885.1| Ras family protein, putative [Ichthyophthirius multifiliis]
Length = 213
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 110/215 (51%), Gaps = 64/215 (29%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
K K++FLG+Q VGKT +I RFMYD FD TIG+D
Sbjct: 21 KHKIIFLGDQHVGKTCIIE-----------------------RFMYDVFDEKSHPTIGVD 57
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
FL+KT+ ++++++RLQLWDTAGQERFRSLIPSY+RD+T AV+V+DIT SF KWI
Sbjct: 58 FLAKTITIDEKSIRLQLWDTAGQERFRSLIPSYLRDATCAVIVFDITQKTSFDNLDKWIQ 117
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
D + RG D +LV NK
Sbjct: 118 DYKDNRGID-----------------------------------------APFILVANKL 136
Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 227
D+ R+V+ +E E+KA+ + V + E SAK G NV
Sbjct: 137 DMKLSREVTQQEAEQKAQSIRVNYYEISAKTGENV 171
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 85/133 (63%), Gaps = 9/133 (6%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K +RLQLWDTAGQERFRSLIPSY+RD+T AV+V+DIT SF KWI D + RG D
Sbjct: 68 KSIRLQLWDTAGQERFRSLIPSYLRDATCAVIVFDITQKTSFDNLDKWIQDYKDNRGIDA 127
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL----- 342
+LV NK D+ R+V+ +E E+KA+ + V + E SAK G NV +F+ +A +L
Sbjct: 128 PFILVANKLDMKLSREVTQQEAEQKAQSIRVNYYEISAKTGENVLNMFKSMATSLQPIEQ 187
Query: 343 ----PGMDSTENK 351
PG + NK
Sbjct: 188 SILNPGQSNENNK 200
>gi|340501363|gb|EGR28156.1| rab6-family small gtpase, putative [Ichthyophthirius multifiliis]
Length = 241
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 123/238 (51%), Gaps = 85/238 (35%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
P+ K+K+VFLG+QSVGKTS+I RF+YD+F + Q T+
Sbjct: 9 PVVKYKIVFLGDQSVGKTSIIN-----------------------RFIYDNFTGSEQPTV 45
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI----------- 118
GIDF+ KT+ LE++T+RLQLWDTAGQERF+SLIPSYIRDS A++VY++
Sbjct: 46 GIDFICKTISLENKTLRLQLWDTAGQERFKSLIPSYIRDSNAAIIVYEVIRVFIYYFYYF 105
Query: 119 ---------TNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS 169
+ +SF+ SKWI++V+ ERG+D +I
Sbjct: 106 QLFFYLKKQKDQSSFNNLSKWIEEVKEERGNDALI------------------------- 140
Query: 170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 227
++GNK+DL D R+VST E + K+ + E SAK+G N+
Sbjct: 141 ----------------FVLGNKSDLED-RKVSTTEATQVLKQFGLNVQEVSAKSGQNI 181
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 91/143 (63%), Gaps = 21/143 (14%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI--------------------TNAN 267
K +RLQLWDTAGQERF+SLIPSYIRDS A++VY++ + +
Sbjct: 59 KTLRLQLWDTAGQERFKSLIPSYIRDSNAAIIVYEVIRVFIYYFYYFQLFFYLKKQKDQS 118
Query: 268 SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA 327
SF+ SKWI++V+ ERG+D +I ++GNK+DL D R+VST E + K+ + E SAK+
Sbjct: 119 SFNNLSKWIEEVKEERGNDALIFVLGNKSDLED-RKVSTTEATQVLKQFGLNVQEVSAKS 177
Query: 328 GYNVKQLFRRVAAALPGMDSTEN 350
G N+ F++++ AL G + EN
Sbjct: 178 GQNIGTFFKQLSYALSGGQNNEN 200
>gi|449512700|ref|XP_004175872.1| PREDICTED: ras-related protein Rab-6A-like, partial [Taeniopygia
guttata]
Length = 112
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 70/74 (94%), Positives = 72/74 (97%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYI
Sbjct: 18 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYI 77
Query: 107 RDSTVAVVVYDITN 120
RDS AVVVYDIT+
Sbjct: 78 RDSAAAVVVYDITS 91
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/38 (84%), Positives = 35/38 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 265
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDIT+
Sbjct: 54 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITS 91
>gi|449273700|gb|EMC83141.1| Ras-related protein RABH1B, partial [Columba livia]
Length = 76
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/74 (91%), Positives = 73/74 (98%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYI
Sbjct: 1 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYI 60
Query: 107 RDSTVAVVVYDITN 120
RDS VAV+V+D+T+
Sbjct: 61 RDSAVAVIVFDVTS 74
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/38 (78%), Positives = 36/38 (94%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 265
+ +RLQLWDTAGQERFRSLIPSYIRDS VAV+V+D+T+
Sbjct: 37 RTIRLQLWDTAGQERFRSLIPSYIRDSAVAVIVFDVTS 74
>gi|340501713|gb|EGR28462.1| Ras family protein, putative [Ichthyophthirius multifiliis]
Length = 585
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 114/215 (53%), Gaps = 64/215 (29%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
K K++FLG+Q VGK+ +I R FMYD FD +T+G+D
Sbjct: 369 KHKIIFLGDQQVGKSCIIER-----------------------FMYDVFDEKSHSTVGVD 405
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
FL+KT++ D++VRLQLWDTAGQERFRSLIPSY+RD+ A++V+D+T S +D
Sbjct: 406 FLAKTLHTGDKSVRLQLWDTAGQERFRSLIPSYLRDANCAIIVFDVTTKES-------LD 458
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
++ KWI D + RG++ +LV NK
Sbjct: 459 NI----------------------------------DKWIKDYKDNRGTEAYCVLVANKI 484
Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 227
DL R ++TE ++KA+ LN+ + E SAK+G N+
Sbjct: 485 DLKLSRVITTETAQQKAQSLNMPYYEVSAKSGENI 519
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 83/124 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K VRLQLWDTAGQERFRSLIPSY+RD+ A++V+D+T S KWI D + RG++
Sbjct: 416 KSVRLQLWDTAGQERFRSLIPSYLRDANCAIIVFDVTTKESLDNIDKWIKDYKDNRGTEA 475
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+LV NK DL R ++TE ++KA+ LN+ + E SAK+G N+ + F++V+ L +
Sbjct: 476 YCVLVANKIDLKLSRVITTETAQQKAQSLNMPYYEVSAKSGENILETFKQVSTYLQQVQE 535
Query: 348 TENK 351
N+
Sbjct: 536 NHNQ 539
>gi|322789416|gb|EFZ14721.1| hypothetical protein SINV_14632 [Solenopsis invicta]
Length = 72
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/72 (94%), Positives = 72/72 (100%)
Query: 263 ITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIE 322
+++ANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIE
Sbjct: 1 LSDANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIE 60
Query: 323 TSAKAGYNVKQL 334
TSAKAGYNVKQ+
Sbjct: 61 TSAKAGYNVKQV 72
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/69 (100%), Positives = 69/69 (100%)
Query: 162 ANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSA 221
ANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSA
Sbjct: 4 ANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSA 63
Query: 222 KAGYNVKQV 230
KAGYNVKQV
Sbjct: 64 KAGYNVKQV 72
>gi|444731513|gb|ELW71866.1| Ras-related protein Rab-6A [Tupaia chinensis]
Length = 90
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 66/75 (88%), Positives = 70/75 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 6 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 65
Query: 288 IIMLVGNKTDLSDKR 302
IIMLVGNKTDL+DKR
Sbjct: 66 IIMLVGNKTDLADKR 80
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/72 (90%), Positives = 68/72 (94%)
Query: 78 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE 137
MYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTE
Sbjct: 1 MYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE 60
Query: 138 RGSDVIIMLVGS 149
RGSDVIIMLVG+
Sbjct: 61 RGSDVIIMLVGN 72
>gi|294942675|ref|XP_002783640.1| rab6, putative [Perkinsus marinus ATCC 50983]
gi|239896142|gb|EER15436.1| rab6, putative [Perkinsus marinus ATCC 50983]
Length = 392
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 97/144 (67%), Gaps = 1/144 (0%)
Query: 205 GERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT 264
GER+ E + F+ + + V+LQLWDTAGQERFRSLIP+Y+RD+ VVV+D+T
Sbjct: 220 GERQENEEGIDFVAKVLTLD-DGRSVKLQLWDTAGQERFRSLIPAYLRDTAACVVVFDLT 278
Query: 265 NANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETS 324
+ SF+ W+ V E+GS V I+LVGNK D++D RQVS EE A EL V + ETS
Sbjct: 279 SEESFNSVRSWMSQVEDEKGSGVKIVLVGNKADMADSRQVSGEEARALAGELGVRYFETS 338
Query: 325 AKAGYNVKQLFRRVAAALPGMDST 348
AK+G +++Q+F +A ++PG +S
Sbjct: 339 AKSGVDIEQIFTEIAKSIPGENSA 362
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 91/162 (56%), Gaps = 42/162 (25%)
Query: 70 GIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
GIDF++K + L+D R+V+LQLWDTAGQERFRSLIP+Y+RD+ VVV+D+T+ SF+
Sbjct: 228 GIDFVAKVLTLDDGRSVKLQLWDTAGQERFRSLIPAYLRDTAACVVVFDLTSEESFNSVR 287
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
W+ V E+GS V I+L V
Sbjct: 288 SWMSQVEDEKGSGVKIVL-----------------------------------------V 306
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNK D++D RQVS EE A EL V + ETSAK+G +++Q+
Sbjct: 307 GNKADMADSRQVSGEEARALAGELGVRYFETSAKSGVDIEQI 348
>gi|183232546|ref|XP_655103.2| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|169801978|gb|EAL49717.2| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|449709304|gb|EMD48591.1| Rab family gtpase [Entamoeba histolytica KU27]
Length = 196
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 111/222 (50%), Gaps = 65/222 (29%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
N L K K+VFLG+ SVGKT +I RFM F+ Y+AT
Sbjct: 2 NTLMKQKIVFLGDSSVGKTCIIG-----------------------RFMTGDFNTGYEAT 38
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IG DF +KTM ++++++LQ+WDTAGQER+RSLIPSYIRDS+ AV+VYDI + SF
Sbjct: 39 IGTDFSTKTMTFQNKSIQLQIWDTAGQERYRSLIPSYIRDSSAAVIVYDINDRQSFESVD 98
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI+DVR++ ++ + L V
Sbjct: 99 KWIEDVRSKEKGEIFLFL-----------------------------------------V 117
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNK DL R+V+ +E K + M ETSAK N+ ++
Sbjct: 118 GNKLDLG-HREVTQKEALAKGQNYQCMCFETSAKTNINITEL 158
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 81/126 (64%), Gaps = 6/126 (4%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQER+RSLIPSYIRDS+ AV+VYDI + SF KWI+DVR++ ++
Sbjct: 53 KSIQLQIWDTAGQERYRSLIPSYIRDSSAAVIVYDINDRQSFESVDKWIEDVRSKEKGEI 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+ LVGNK DL R+V+ +E K + M ETSAK N+ +LF + L ++
Sbjct: 113 FLFLVGNKLDLG-HREVTQKEALAKGQNYQCMCFETSAKTNINITELFNAITEKLSTLE- 170
Query: 348 TENKPP 353
PP
Sbjct: 171 ----PP 172
>gi|384487952|gb|EIE80132.1| GTP-binding protein RAB6 [Rhizopus delemar RA 99-880]
Length = 124
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/121 (58%), Positives = 82/121 (67%), Gaps = 29/121 (23%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYDI+N SF TSKWIDDVR ERG DV
Sbjct: 6 KTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDISNRQSFINTSKWIDDVRAERGEDV 65
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LV ETSAKAG+NVK LF+++A +LPG+D
Sbjct: 66 IIVLV-----------------------------ETSAKAGHNVKTLFKKIAQSLPGVDG 96
Query: 348 T 348
+
Sbjct: 97 S 97
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/70 (84%), Positives = 64/70 (91%)
Query: 78 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE 137
MYLED+TVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYDI+N SF TSKWIDDVR E
Sbjct: 1 MYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDISNRQSFINTSKWIDDVRAE 60
Query: 138 RGSDVIIMLV 147
RG DVII+LV
Sbjct: 61 RGEDVIIVLV 70
>gi|183231256|ref|XP_655064.2| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|169802558|gb|EAL49676.2| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
Length = 196
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 111/222 (50%), Gaps = 65/222 (29%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
N L K K+VFLG+ SVGKT +I RFM F+ Y+AT
Sbjct: 2 NTLMKQKIVFLGDSSVGKTCIIG-----------------------RFMNGDFNTGYEAT 38
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IG DF +KTM ++++++LQ+WDTAGQER+RSLIPSYIRDS+ AV+VYDI + SF
Sbjct: 39 IGTDFSTKTMTFQNKSIQLQIWDTAGQERYRSLIPSYIRDSSAAVIVYDINDRQSFESVD 98
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI+DVR++ ++ + L V
Sbjct: 99 KWIEDVRSKEKGEIFLFL-----------------------------------------V 117
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNK DL R+V+ +E K + M ETSAK N+ ++
Sbjct: 118 GNKLDLG-HREVTQKEALAKGQNYQCMCFETSAKTNINITEL 158
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 81/126 (64%), Gaps = 6/126 (4%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQER+RSLIPSYIRDS+ AV+VYDI + SF KWI+DVR++ ++
Sbjct: 53 KSIQLQIWDTAGQERYRSLIPSYIRDSSAAVIVYDINDRQSFESVDKWIEDVRSKEKGEI 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+ LVGNK DL R+V+ +E K + M ETSAK N+ +LF + L ++
Sbjct: 113 FLFLVGNKLDLG-HREVTQKEALAKGQNYQCMCFETSAKTNINITELFNAITEKLSTLE- 170
Query: 348 TENKPP 353
PP
Sbjct: 171 ----PP 172
>gi|13177619|gb|AAK14837.1| GTP-binding protein RAB6 [Mus musculus]
Length = 73
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 70/96 (72%), Positives = 72/96 (75%), Gaps = 23/96 (23%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 96
FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQE
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 73
>gi|123389208|ref|XP_001299687.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|72536122|gb|AAZ73169.1| small Rab GTPase Rab6a [Trichomonas vaginalis]
gi|121880590|gb|EAX86757.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 198
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 103/184 (55%), Gaps = 43/184 (23%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTS+I +F+Y+S + +QAT+GIDF SK + ++ + V++Q+WDTAGQE+F SLIPSYI
Sbjct: 16 VGKTSIINQFIYESISDEHQATVGIDFFSKQIEVDGKVVKMQIWDTAGQEKFSSLIPSYI 75
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
RDSTVAV VYDIT+ SF +W
Sbjct: 76 RDSTVAVFVYDITSEESFDHLERW------------------------------------ 99
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+K + D+ ++ VGNKTDLSD RQV E + ++E FIE SAKA N
Sbjct: 100 --TKLVSDIANPS-----LVFVGNKTDLSDARQVPIERLQNYSEEKKGKFIEVSAKAPTN 152
Query: 227 VKQV 230
+K++
Sbjct: 153 IKEL 156
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 84/125 (67%), Gaps = 9/125 (7%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K V++Q+WDTAGQE+F SLIPSYIRDSTVAV VYDIT+ SF +W T+ SD+
Sbjct: 52 KVVKMQIWDTAGQEKFSSLIPSYIRDSTVAVFVYDITSEESFDHLERW-----TKLVSDI 106
Query: 288 I---IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
++ VGNKTDLSD RQV E + ++E FIE SAKA N+K+LF+ + A +P
Sbjct: 107 ANPSLVFVGNKTDLSDARQVPIERLQNYSEEKKGKFIEVSAKAPTNIKELFQMI-AEIPP 165
Query: 345 MDSTE 349
+D E
Sbjct: 166 VDLPE 170
>gi|340500595|gb|EGR27462.1| Ras family protein, putative [Ichthyophthirius multifiliis]
Length = 169
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 99/155 (63%), Gaps = 25/155 (16%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
K K++FLG+Q VGKT +I RFMYD FD T+G+D
Sbjct: 19 KHKIIFLGDQHVGKTCIIE-----------------------RFMYDVFDEKPHPTVGVD 55
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
FL+KT++++D+++RLQLWDTAGQERFRSLIPSY+RD+T AV+V+D+T+ SF+ KW+
Sbjct: 56 FLAKTLHIDDKSIRLQLWDTAGQERFRSLIPSYLRDATCAVIVFDVTSQESFNSIDKWVK 115
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ 167
D + RG + ++G+ +T+ LS+++ F +
Sbjct: 116 DYKDHRGPEAPC-IIGANKTDLK-LSYYYFLFFQK 148
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 54/71 (76%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K +RLQLWDTAGQERFRSLIPSY+RD+T AV+V+D+T+ SF+ KW+ D + RG +
Sbjct: 66 KSIRLQLWDTAGQERFRSLIPSYLRDATCAVIVFDVTSQESFNSIDKWVKDYKDHRGPEA 125
Query: 288 IIMLVGNKTDL 298
++ NKTDL
Sbjct: 126 PCIIGANKTDL 136
>gi|56790148|dbj|BAD82870.1| small GTPase EhRabX22 [Entamoeba histolytica]
Length = 192
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 100/184 (54%), Gaps = 42/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT +I RFM F+ Y+ATIG DF +KTM ++++++LQ+WDTAGQER+RSLIPSYI
Sbjct: 13 VGKTCIIGRFMTGDFNTGYEATIGTDFSTKTMTFQNKSIQLQIWDTAGQERYRSLIPSYI 72
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
RDS+ AV+VYDI + SF KWI+DVR++ ++ + L
Sbjct: 73 RDSSAAVIVYDINDRQSFESVDKWIEDVRSKEKGEIFLFL-------------------- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
VGNK DL R+V+ +E K + M ETSAK N
Sbjct: 113 ---------------------VGNKLDLG-HREVTQKEALAKGQNYQCMCFETSAKTNIN 150
Query: 227 VKQV 230
+ ++
Sbjct: 151 ITEL 154
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 81/126 (64%), Gaps = 6/126 (4%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQER+RSLIPSYIRDS+ AV+VYDI + SF KWI+DVR++ ++
Sbjct: 49 KSIQLQIWDTAGQERYRSLIPSYIRDSSAAVIVYDINDRQSFESVDKWIEDVRSKEKGEI 108
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+ LVGNK DL R+V+ +E K + M ETSAK N+ +LF + L ++
Sbjct: 109 FLFLVGNKLDLG-HREVTQKEALAKGQNYQCMCFETSAKTNINITELFNAITEKLSTLE- 166
Query: 348 TENKPP 353
PP
Sbjct: 167 ----PP 168
>gi|167389097|ref|XP_001738817.1| GTP-binding protein ryH1 [Entamoeba dispar SAW760]
gi|165897808|gb|EDR24880.1| GTP-binding protein ryH1, putative [Entamoeba dispar SAW760]
Length = 196
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 109/222 (49%), Gaps = 65/222 (29%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
N L K K+VFLG+ SVGKT +I RFM F Y+AT
Sbjct: 2 NTLMKQKIVFLGDSSVGKTCIIG-----------------------RFMTGDFSTGYEAT 38
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IG DF +KTM ++++++LQ+WDTAGQER+RSLIPSYIRDS+ AV+VYDI + SF
Sbjct: 39 IGTDFSTKTMTFQNKSIQLQIWDTAGQERYRSLIPSYIRDSSAAVIVYDINDRQSFENVD 98
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI+DVR++ ++ + L V
Sbjct: 99 KWIEDVRSKEKGEIFLFL-----------------------------------------V 117
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNK DL R+V+ +E K + ETSAK N+ ++
Sbjct: 118 GNKLDLG-HREVTQKEALAKGQNYQCTCFETSAKTNINITEL 158
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 81/128 (63%), Gaps = 5/128 (3%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQER+RSLIPSYIRDS+ AV+VYDI + SF KWI+DVR++ ++
Sbjct: 53 KSIQLQIWDTAGQERYRSLIPSYIRDSSAAVIVYDINDRQSFENVDKWIEDVRSKEKGEI 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+ LVGNK DL R+V+ +E K + ETSAK N+ +LF + L S
Sbjct: 113 FLFLVGNKLDLG-HREVTQKEALAKGQNYQCTCFETSAKTNINITELFNAITEKL----S 167
Query: 348 TENKPPED 355
T P ED
Sbjct: 168 TLEPPVED 175
>gi|167389639|ref|XP_001739030.1| GTP-binding protein ryH1 [Entamoeba dispar SAW760]
gi|165897453|gb|EDR24605.1| GTP-binding protein ryH1, putative [Entamoeba dispar SAW760]
Length = 196
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 109/222 (49%), Gaps = 65/222 (29%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
N L K K+VFLG+ SVGKT +I RFM F Y+AT
Sbjct: 2 NTLMKQKIVFLGDSSVGKTCIIG-----------------------RFMTGDFSTGYEAT 38
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IG DF +KTM ++++++LQ+WDTAGQER+RSLIPSYIRDS+ AV+VYDI + SF
Sbjct: 39 IGTDFSTKTMTFQNKSIQLQIWDTAGQERYRSLIPSYIRDSSAAVIVYDINDRQSFENVD 98
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI+DVR++ ++ + L V
Sbjct: 99 KWIEDVRSKEKGEIFLFL-----------------------------------------V 117
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNK DL R+V+ +E K + ETSAK N+ ++
Sbjct: 118 GNKLDLG-HREVTQKEALAKGQNYQCTCFETSAKTNINITEL 158
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 80/126 (63%), Gaps = 6/126 (4%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQER+RSLIPSYIRDS+ AV+VYDI + SF KWI+DVR++ ++
Sbjct: 53 KSIQLQIWDTAGQERYRSLIPSYIRDSSAAVIVYDINDRQSFENVDKWIEDVRSKEKGEI 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+ LVGNK DL R+V+ +E K + ETSAK N+ +LF + L ++
Sbjct: 113 FLFLVGNKLDLG-HREVTQKEALAKGQNYQCTCFETSAKTNINITELFNAITEKLSTLE- 170
Query: 348 TENKPP 353
PP
Sbjct: 171 ----PP 172
>gi|313213264|emb|CBY37104.1| unnamed protein product [Oikopleura dioica]
gi|313226486|emb|CBY21631.1| unnamed protein product [Oikopleura dioica]
Length = 203
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 115/234 (49%), Gaps = 64/234 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
M++ N + +FKLV LGE +VGK+SL+ RF+
Sbjct: 1 MAAPRPATNKIIQFKLVLLGEAAVGKSSLVL-----------------------RFVKGE 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
F + ++TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + AVVVYDI
Sbjct: 38 FKDHQESTIGAAFLTQTVCLDDVTVKFEIWDTAGQERYHSLAPMYYRGAQAAVVVYDIQC 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
++F + W+ ++R + D++I
Sbjct: 98 PDTFSRAQAWVKELRQQANQDIVI------------------------------------ 121
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
L GNK DL+ KR++ TEE E AKE N++F+ETSAK NV + LQ+
Sbjct: 122 -----ALAGNKADLAAKREIETEEAEVYAKENNLLFMETSAKTALNVNDLFLQI 170
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 79/118 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + AVVVYDI ++F + W+ ++R + D++I
Sbjct: 62 VKFEIWDTAGQERYHSLAPMYYRGAQAAVVVYDIQCPDTFSRAQAWVKELRQQANQDIVI 121
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
L GNK DL+ KR++ TEE E AKE N++F+ETSAK NV LF ++A LP DS
Sbjct: 122 ALAGNKADLAAKREIETEEAEVYAKENNLLFMETSAKTALNVNDLFLQIAKKLPKKDS 179
>gi|71404522|ref|XP_804960.1| small GTP-binding protein RAB6 [Trypanosoma cruzi strain CL Brener]
gi|70868178|gb|EAN83109.1| small GTP-binding protein RAB6, putative [Trypanosoma cruzi]
Length = 181
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/104 (63%), Positives = 81/104 (77%)
Query: 240 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS 299
QERFRSLIPSYIR+ + +VVYDIT+ SF T KWID+VR ERG V+I LVGNK D
Sbjct: 1 QERFRSLIPSYIRNISGTIVVYDITSRASFLGTFKWIDEVRAERGDSVVIFLVGNKLDAQ 60
Query: 300 DKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
+KR VSTEE ++KA+E N++F+E SAK G NVK LFR++A ALP
Sbjct: 61 EKRVVSTEEAQKKAEEYNLVFMEVSAKQGKNVKALFRKMAEALP 104
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 73/136 (53%), Gaps = 41/136 (30%)
Query: 95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNF 154
QERFRSLIPSYIR+ + +VVYDIT+ SF T
Sbjct: 1 QERFRSLIPSYIRNISGTIVVYDITSRASFLGTF-------------------------- 34
Query: 155 THLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV 214
KWID+VR ERG V+I LVGNK D +KR VSTEE ++KA+E N+
Sbjct: 35 ---------------KWIDEVRAERGDSVVIFLVGNKLDAQEKRVVSTEEAQKKAEEYNL 79
Query: 215 MFIETSAKAGYNVKQV 230
+F+E SAK G NVK +
Sbjct: 80 VFMEVSAKQGKNVKAL 95
>gi|440295244|gb|ELP88157.1| GTP-binding protein ryH1, putative [Entamoeba invadens IP1]
Length = 197
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 122/251 (48%), Gaps = 74/251 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L+K K+VFLG+ SVGKT +I RFM SF Y+ATIG
Sbjct: 4 LKKHKIVFLGDSSVGKTCIIG-----------------------RFMTSSFCTNYEATIG 40
Query: 71 IDFLSKTMYLE--DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
DF SKT+ E +TV+LQ+WDTAGQER+ SLIPSYIRDS+VAV+VYDI + +F
Sbjct: 41 TDFSSKTLTDEATQQTVQLQIWDTAGQERYHSLIPSYIRDSSVAVIVYDINDRQTFDNID 100
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
W++DV ++ DVI+ +V
Sbjct: 101 NWVEDVHSKEKGDVILFIV----------------------------------------- 119
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP 248
GNK DL KR+V+ +E KA + ETSAK NV ++ A ER +L P
Sbjct: 120 GNKLDLG-KREVTQKEAIAKADYHHCQCFETSAKENCNVTELF-----KAITERLCALQP 173
Query: 249 SYIRDSTVAVV 259
+ +D TV V
Sbjct: 174 T--KDETVETV 182
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 83/125 (66%), Gaps = 1/125 (0%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+LQ+WDTAGQER+ SLIPSYIRDS+VAV+VYDI + +F W++DV ++ DVI+
Sbjct: 57 VQLQIWDTAGQERYHSLIPSYIRDSSVAVIVYDINDRQTFDNIDNWVEDVHSKEKGDVIL 116
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
+VGNK DL KR+V+ +E KA + ETSAK NV +LF+ + L + T+
Sbjct: 117 FIVGNKLDLG-KREVTQKEAIAKADYHHCQCFETSAKENCNVTELFKAITERLCALQPTK 175
Query: 350 NKPPE 354
++ E
Sbjct: 176 DETVE 180
>gi|294896680|ref|XP_002775678.1| RAB6 protein, putative [Perkinsus marinus ATCC 50983]
gi|239881901|gb|EER07494.1| RAB6 protein, putative [Perkinsus marinus ATCC 50983]
Length = 188
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 89/121 (73%), Gaps = 2/121 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
+ ++LQLWDTAGQERFRSLIP+Y+RD+ VVV+D+++ SF+ W+D VR E+G++
Sbjct: 39 RMIKLQLWDTAGQERFRSLIPAYLRDTAACVVVFDLSSKESFNSVRSWVDQVRDEKGTNG 98
Query: 287 -VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
V I+LVGNK D++D RQVS EE A+EL + + ETSAK+G ++ ++F +A ++P
Sbjct: 99 GVEIVLVGNKADMADLRQVSNEEANALAEELGLKYFETSAKSGIDIDEIFTEIAKSIPEE 158
Query: 346 D 346
D
Sbjct: 159 D 159
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 101/174 (58%), Gaps = 40/174 (22%)
Query: 69 IGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
+GIDF++K + L+D R ++LQLWDTAGQERFRSLIP+Y+RD+ VVV+D+++ SF+
Sbjct: 24 LGIDFVAKVITLDDGRMIKLQLWDTAGQERFRSLIPAYLRDTAACVVVFDLSSKESFNSV 83
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+D VR E+G++ G +E I+L
Sbjct: 84 RSWVDQVRDEKGTN------GGVE---------------------------------IVL 104
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQE 241
VGNK D++D RQVS EE A+EL + + ETSAK+G ++ ++ ++ + +E
Sbjct: 105 VGNKADMADLRQVSNEEANALAEELGLKYFETSAKSGIDIDEIFTEIAKSIPEE 158
>gi|321448228|gb|EFX61364.1| hypothetical protein DAPPUDRAFT_69789 [Daphnia pulex]
Length = 141
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 91/137 (66%), Gaps = 23/137 (16%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
KFK+VF+G+QSVGK+S+I RF+ + FD+ + T+GID
Sbjct: 1 KFKIVFIGDQSVGKSSIIN-----------------------RFIKNEFDSAHNPTVGID 37
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
F+SK + +++++VRLQLWDTAGQERFRSLIP Y+RDS +V+D+TNA+SF + W+D
Sbjct: 38 FVSKNVTVKEKSVRLQLWDTAGQERFRSLIPGYLRDSHAVFLVFDVTNADSFQNLNMWLD 97
Query: 133 DVRTERGSDVIIMLVGS 149
V+ RG DV I+++ +
Sbjct: 98 YVKENRGEDVAIVIIAN 114
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 63/87 (72%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K VRLQLWDTAGQERFRSLIP Y+RDS +V+D+TNA+SF + W+D V+ RG DV
Sbjct: 48 KSVRLQLWDTAGQERFRSLIPGYLRDSHAVFLVFDVTNADSFQNLNMWLDYVKENRGEDV 107
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAK 314
I+++ NK D ++R VS+ + + K K
Sbjct: 108 AIVIIANKIDQVEERAVSSADAKEKLK 134
>gi|440794437|gb|ELR15598.1| ras-related protein Rab-2A, putative [Acanthamoeba castellanii str.
Neff]
Length = 200
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 99/186 (53%), Gaps = 41/186 (22%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ L+ +F F + TIG++F S+T+ +ED V+LQ+WDTAGQE+FRS+ S
Sbjct: 31 TAVGKSCLLLQFTDKRFQPVHDLTIGVEFGSRTLTIEDNQVKLQIWDTAGQEKFRSITRS 90
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R + A++VYDIT +F + W++D R S+++IML
Sbjct: 91 YYRGAAGALLVYDITRRETFEHLTSWLEDCRKYSNSNIVIML------------------ 132
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
+GNK DL KRQVS EEG AKE N++F+ETSAK
Sbjct: 133 -----------------------IGNKCDLESKRQVSKEEGAAFAKEHNLLFLETSAKTA 169
Query: 225 YNVKQV 230
NV+Q
Sbjct: 170 ENVEQA 175
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 78/111 (70%)
Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI 288
QV+LQ+WDTAGQE+FRS+ SY R + A++VYDIT +F + W++D R S+++
Sbjct: 70 QVKLQIWDTAGQEKFRSITRSYYRGAAGALLVYDITRRETFEHLTSWLEDCRKYSNSNIV 129
Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
IML+GNK DL KRQVS EEG AKE N++F+ETSAK NV+Q F A
Sbjct: 130 IMLIGNKCDLESKRQVSKEEGAAFAKEHNLLFLETSAKTAENVEQAFINTA 180
>gi|351701723|gb|EHB04642.1| Ras-related protein Rab-6A [Heterocephalus glaber]
Length = 111
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 72/86 (83%)
Query: 270 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 329
QT+KWIDDVRTERG+DVIIMLVGNKTDLSDKRQ+S EEGERKAKELNVMFIETSAKAGY
Sbjct: 26 QQTTKWIDDVRTERGNDVIIMLVGNKTDLSDKRQMSIEEGERKAKELNVMFIETSAKAGY 85
Query: 330 NVKQLFRRVAAALPGMDSTENKPPED 355
NVKQL R ++A G + + + D
Sbjct: 86 NVKQLLRSSSSAWNGKHTGQKQSRHD 111
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/65 (90%), Positives = 63/65 (96%)
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 225
QT+KWIDDVRTERG+DVIIMLVGNKTDLSDKRQ+S EEGERKAKELNVMFIETSAKAGY
Sbjct: 26 QQTTKWIDDVRTERGNDVIIMLVGNKTDLSDKRQMSIEEGERKAKELNVMFIETSAKAGY 85
Query: 226 NVKQV 230
NVKQ+
Sbjct: 86 NVKQL 90
>gi|453089344|gb|EMF17384.1| ras-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 225
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 114/231 (49%), Gaps = 69/231 (29%)
Query: 5 GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT 64
G G +FKLV LGE +VGK+SL+ RF+ D FD+
Sbjct: 11 GGGGARFAQFKLVLLGESAVGKSSLVL-----------------------RFVKDQFDDY 47
Query: 65 YQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
++TIG FL++T+ L+++T V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A S
Sbjct: 48 RESTIGAAFLTQTIALDEQTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQAAS 107
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
+ W+ +++ + ++II
Sbjct: 108 LDKAKAWVKELQRQANENIII--------------------------------------- 128
Query: 184 IIMLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
L GNK DL DKR VST + E AKE N++F ETSAK NVK++
Sbjct: 129 --ALAGNKADLVAEQPDKRAVSTADAEAYAKEANLLFFETSAKTAENVKEL 177
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 82/134 (61%), Gaps = 11/134 (8%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A S + W+ +++ + ++II
Sbjct: 69 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQAASLDKAKAWVKELQRQANENIII 128
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP-- 343
L GNK DL DKR VST + E AKE N++F ETSAK NVK+LF +A LP
Sbjct: 129 ALAGNKADLVAEQPDKRAVSTADAEAYAKEANLLFFETSAKTAENVKELFTAIAKKLPIE 188
Query: 344 -----GMDSTENKP 352
GM +P
Sbjct: 189 QATQRGMRGAAGRP 202
>gi|357460037|ref|XP_003600300.1| Ras-related protein Rab-2-A [Medicago truncatula]
gi|355489348|gb|AES70551.1| Ras-related protein Rab-2-A [Medicago truncatula]
Length = 198
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 102/188 (54%), Gaps = 41/188 (21%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ L+ +FM + F + ATIG+ F KT+ + + V+LQ+WDTAGQERFRS+ S
Sbjct: 15 TGVGKSCLVLQFMDNRFQRFHNATIGVGFGFKTININNNPVKLQIWDTAGQERFRSITKS 74
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R + A++VYDIT +F + W++D R SD IIML
Sbjct: 75 YYRKAACALLVYDITRRETFDHLATWLEDARQHASSDTIIML------------------ 116
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
+GNK+DL+ R VSTEEGE+ KE +MF+E SAK+
Sbjct: 117 -----------------------IGNKSDLACNRVVSTEEGEKFTKENGLMFMEVSAKSR 153
Query: 225 YNVKQVRL 232
N+++VR+
Sbjct: 154 ENIEEVRV 161
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 77/109 (70%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N V+LQ+WDTAGQERFRS+ SY R + A++VYDIT +F + W++D R S
Sbjct: 51 NNNPVKLQIWDTAGQERFRSITKSYYRKAACALLVYDITRRETFDHLATWLEDARQHASS 110
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 334
D IIML+GNK+DL+ R VSTEEGE+ KE +MF+E SAK+ N++++
Sbjct: 111 DTIIMLIGNKSDLACNRVVSTEEGEKFTKENGLMFMEVSAKSRENIEEV 159
>gi|402470455|gb|EJW04677.1| small GTP-binding protein domain protein [Edhazardia aedis USNM
41457]
Length = 194
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 116/223 (52%), Gaps = 52/223 (23%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+SL+ +++ F+ ++TIG F +KT+ L+D V+ ++WDTAGQER+ SLIP Y
Sbjct: 21 VGKSSLVMKYVKREFNPNEESTIGAAFCAKTVQLKDCNVKYEIWDTAGQERYNSLIPMYY 80
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + VA++VYDITN SF KW+D+++ E+ D + +L
Sbjct: 81 RGAQVALIVYDITNPQSFTCAKKWVDELKEEKPKDFLKVL-------------------- 120
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
VGNK+DL R++ E+G A++ ++F ETSAK GYN
Sbjct: 121 ---------------------VGNKSDLDASRKIHFEDGLNYAEQNGLLFYETSAKTGYN 159
Query: 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 269
V ++ E S++P IR S V + ++T N+F
Sbjct: 160 VDKIF---------EDVASILPRTIRKSAVPSI--NVTGKNNF 191
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 81/114 (71%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SLIP Y R + VA++VYDITN SF KW+D+++ E+ D +
Sbjct: 59 VKYEIWDTAGQERYNSLIPMYYRGAQVALIVYDITNPQSFTCAKKWVDELKEEKPKDFLK 118
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
+LVGNK+DL R++ E+G A++ ++F ETSAK GYNV ++F VA+ LP
Sbjct: 119 VLVGNKSDLDASRKIHFEDGLNYAEQNGLLFYETSAKTGYNVDKIFEDVASILP 172
>gi|357601800|gb|EHJ63158.1| ras small monomeric GTPase Rab6 [Danaus plexippus]
Length = 88
Score = 130 bits (327), Expect = 1e-27, Method: Composition-based stats.
Identities = 63/66 (95%), Positives = 66/66 (100%)
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
MLVGNKTDLSDKRQVSTE+G+RKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE
Sbjct: 1 MLVGNKTDLSDKRQVSTEDGDRKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 60
Query: 350 NKPPED 355
+KPPED
Sbjct: 61 SKPPED 66
Score = 87.0 bits (214), Expect = 1e-14, Method: Composition-based stats.
Identities = 42/45 (93%), Positives = 45/45 (100%)
Query: 186 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
MLVGNKTDLSDKRQVSTE+G+RKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 1 MLVGNKTDLSDKRQVSTEDGDRKAKELNVMFIETSAKAGYNVKQL 45
>gi|294899961|ref|XP_002776830.1| RAS small GTpases RIC1/ypt1, putative [Perkinsus marinus ATCC
50983]
gi|239884031|gb|EER08646.1| RAS small GTpases RIC1/ypt1, putative [Perkinsus marinus ATCC
50983]
Length = 232
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 110/200 (55%), Gaps = 46/200 (23%)
Query: 36 DSFDNTYQATI-----VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90
DS+D T + + VGK+SL+ RF + FD+ + TIG+DF KT+ ++DR VRLQ+W
Sbjct: 18 DSYDATARILVLGDSAVGKSSLLMRFCENRFDSNFVITIGVDFRVKTINIQDREVRLQIW 77
Query: 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSI 150
DTAGQERFR++ P+Y R++ +++YD+T++ SF W+ ++
Sbjct: 78 DTAGQERFRTITPAYYRNAMGVLLIYDMTDSKSFKNVDYWVRNLD--------------- 122
Query: 151 ETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK 210
HA+ Q +LVGNK D++ KR+VSTEEG+ A
Sbjct: 123 ---------EHADKTVQK-----------------LLVGNKADMAAKRKVSTEEGQALAD 156
Query: 211 ELNVMFIETSAKAGYNVKQV 230
+ + F ETSAK+G NV+Q
Sbjct: 157 KYGMTFFETSAKSGLNVEQA 176
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 79/112 (70%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
++VRLQ+WDTAGQERFR++ P+Y R++ +++YD+T++ SF W+ ++ V
Sbjct: 70 REVRLQIWDTAGQERFRTITPAYYRNAMGVLLIYDMTDSKSFKNVDYWVRNLDEHADKTV 129
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
+LVGNK D++ KR+VSTEEG+ A + + F ETSAK+G NV+Q FR +A
Sbjct: 130 QKLLVGNKADMAAKRKVSTEEGQALADKYGMTFFETSAKSGLNVEQAFRAIA 181
>gi|123401208|ref|XP_001301812.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|62736246|gb|AAX97452.1| small Rab GTPase Rab6b [Trichomonas vaginalis]
gi|121883039|gb|EAX88882.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 191
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 78/103 (75%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTSL+ R M D F N Y TIG+DF +K + ++ RTV LQ+WDTAGQERF+SL+PSYI
Sbjct: 15 VGKTSLLNRLMTDEFSNQYNTTIGVDFFTKPVQVQGRTVTLQIWDTAGQERFKSLMPSYI 74
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGS 149
RDS+VAV+VYD+++ SF + +W + V ERG++ +LVG+
Sbjct: 75 RDSSVAVIVYDVSDEKSFDEAQEWYETVMHERGNEAKCVLVGN 117
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 79/116 (68%), Gaps = 2/116 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ V LQ+WDTAGQERF+SL+PSYIRDS+VAV+VYD+++ SF + +W + V ERG++
Sbjct: 51 RTVTLQIWDTAGQERFKSLMPSYIRDSSVAVIVYDVSDEKSFDEAQEWYETVMHERGNEA 110
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
+LVGNK DL +R+V + + AK + IETSAK V +LF+ ++ P
Sbjct: 111 KCVLVGNKIDL--ERRVDLKHVDDFAKPRQMQTIETSAKTSSGVARLFKLISELAP 164
>gi|302789646|ref|XP_002976591.1| rab family GTPase [Selaginella moellendorffii]
gi|300155629|gb|EFJ22260.1| rab family GTPase [Selaginella moellendorffii]
Length = 221
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 104/184 (56%), Gaps = 41/184 (22%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
+ VGK++L+TR+ + F++ +ATIG++F +++M + + V+ Q+WDTAGQERFR++ +
Sbjct: 22 SAVGKSNLLTRYARNEFNHNSKATIGVEFQTQSMRINGKEVKAQVWDTAGQERFRAVTSA 81
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R + A+VVYDIT +
Sbjct: 82 YYRGALGALVVYDIT-----------------------------------------RKQT 100
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
F SKW+D++RT GS V+ MLVGNK DL+D R+VS EEG+ A+ N+ F+ETSA A
Sbjct: 101 FENISKWLDELRTYGGSSVVTMLVGNKCDLTDIREVSVEEGKELAESENLFFMETSALAS 160
Query: 225 YNVK 228
NVK
Sbjct: 161 TNVK 164
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 81/113 (71%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N K+V+ Q+WDTAGQERFR++ +Y R + A+VVYDIT +F SKW+D++RT GS
Sbjct: 58 NGKEVKAQVWDTAGQERFRAVTSAYYRGALGALVVYDITRKQTFENISKWLDELRTYGGS 117
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
V+ MLVGNK DL+D R+VS EEG+ A+ N+ F+ETSA A NVK F+ V
Sbjct: 118 SVVTMLVGNKCDLTDIREVSVEEGKELAESENLFFMETSALASTNVKTAFQNV 170
>gi|429850247|gb|ELA25539.1| rab GTPase vps21 [Colletotrichum gloeosporioides Nara gc5]
Length = 241
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 117/230 (50%), Gaps = 39/230 (16%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
M SG P KLV LGE +VGK+SL+ RF+ +
Sbjct: 1 MDGSGGAPKPSSSVKLVLLGEAAVGKSSLVL-----------------------RFVNND 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
F + TIG FL++ L RT++ ++WDTAGQERF SL P Y R++ A+VVYD+T
Sbjct: 38 FQENKEPTIGAAFLTQKCNLPTRTIKFEIWDTAGQERFASLAPMYYRNAQAALVVYDLTK 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
S + W+ +++ + ++I LVG+ + + T+ + A S + +D E G
Sbjct: 98 PTSLIKAKHWVAELQRQASPGIVIALVGN-KLDLTNGAGESAGSAGGDAG--EDADGEDG 154
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
S D R+VSTEE + A+E +++F ETSAK G+NV +V
Sbjct: 155 S-------------GDARKVSTEEAKTYAEEESLLFFETSAKTGHNVTEV 191
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 88/163 (53%), Gaps = 27/163 (16%)
Query: 206 ERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 265
E K + F+ + K + ++ ++WDTAGQERF SL P Y R++ A+VVYD+T
Sbjct: 40 ENKEPTIGAAFL--TQKCNLPTRTIKFEIWDTAGQERFASLAPMYYRNAQAALVVYDLTK 97
Query: 266 ANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS-------------------------D 300
S + W+ +++ + ++I LVGNK DL+ D
Sbjct: 98 PTSLIKAKHWVAELQRQASPGIVIALVGNKLDLTNGAGESAGSAGGDAGEDADGEDGSGD 157
Query: 301 KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
R+VSTEE + A+E +++F ETSAK G+NV ++F +A A+P
Sbjct: 158 ARKVSTEEAKTYAEEESLLFFETSAKTGHNVTEVFTAIANAIP 200
>gi|17066210|emb|CAD12439.1| Rab5c GTPase [Plasmodium falciparum 3D7]
Length = 214
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 79/124 (63%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
++ ++WDTAGQER+RSL P Y R ++ AV+VYDITN SF WI ++++ +D+II
Sbjct: 76 IKFEIWDTAGQERYRSLAPMYYRGASAAVIVYDITNKKSFEGAKGWIHELKSVHSNDIII 135
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
L GNK DL + R V E E A N++FIETSAK G NV +LF R+A LP +
Sbjct: 136 ALAGNKNDLEEHRAVDRELAESFANSNNILFIETSAKTGQNVNELFLRIAKKLPLHKKEQ 195
Query: 350 NKPP 353
K P
Sbjct: 196 EKCP 199
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 97/190 (51%), Gaps = 41/190 (21%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ ++ RF + F ++TIG F+++ + + + T++ ++WDTAGQER+RSL P
Sbjct: 36 TSVGKSCIVVRFAKNEFYEYQESTIGAAFMTQLIDIGECTIKFEIWDTAGQERYRSLAPM 95
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R ++ AV+VYDITN SF WI ++++ +D+II
Sbjct: 96 YYRGASAAVIVYDITNKKSFEGAKGWIHELKSVHSNDIII-------------------- 135
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
L GNK DL + R V E E A N++FIETSAK G
Sbjct: 136 ---------------------ALAGNKNDLEEHRAVDRELAESFANSNNILFIETSAKTG 174
Query: 225 YNVKQVRLQL 234
NV ++ L++
Sbjct: 175 QNVNELFLRI 184
>gi|392579448|gb|EIW72575.1| hypothetical protein TREMEDRAFT_66953 [Tremella mesenterica DSM
1558]
Length = 246
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 104/185 (56%), Gaps = 9/185 (4%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+SL+ RF+ + F+ TIG FL++ LE+R V+ ++WDTAGQERF SL P Y
Sbjct: 22 VGKSSLVLRFVQNDFNENTSPTIGAAFLTQRCRLENRIVKFEIWDTAGQERFHSLAPMYY 81
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGS-IETNFTHLSFHHANSF 165
R++ AVVVYDIT + S + W+ +++ + ++II LVG+ ++ S +
Sbjct: 82 RNAAAAVVVYDITKSASLEKAKAWVKELQRQANPNIIIALVGNKLDLVSDTPSEPPTDGL 141
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 225
D+ T + ++ KT+ D RQVS E E AKE ++F E SAK G
Sbjct: 142 EVERDEEDEETTPKPAE--------KTEEGDSRQVSIAEAETYAKECGLLFFEASAKVGT 193
Query: 226 NVKQV 230
NV +V
Sbjct: 194 NVNEV 198
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 81/157 (51%), Gaps = 35/157 (22%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQERF SL P Y R++ AVVVYDIT + S + W+ +++ + ++II
Sbjct: 60 VKFEIWDTAGQERFHSLAPMYYRNAAAAVVVYDITKSASLEKAKAWVKELQRQANPNIII 119
Query: 290 MLVGNKTDL----------------------------------SDKRQVSTEEGERKAKE 315
LVGNK DL D RQVS E E AKE
Sbjct: 120 ALVGNKLDLVSDTPSEPPTDGLEVERDEEDEETTPKPAEKTEEGDSRQVSIAEAETYAKE 179
Query: 316 LNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTENKP 352
++F E SAK G NV ++F +A A+P +D+ KP
Sbjct: 180 CGLLFFEASAKVGTNVNEVFTEIAKAIP-LDTISPKP 215
>gi|405960207|gb|EKC26148.1| Ras-related protein Rab-5B [Crassostrea gigas]
Length = 818
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 110/196 (56%), Gaps = 21/196 (10%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSY 105
VGK+S+ RF+ F+ +ATIG +L+KT+ +++ T ++ +WDTAGQER+ SL P Y
Sbjct: 596 VGKSSIALRFVRGEFNENGEATIGAAYLTKTINVQNSTAIKFDIWDTAGQERYHSLAPMY 655
Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGS----------IETNFT 155
R + AVVVYDIT+ SF + W+ ++ + S ++I LVG+ I T
Sbjct: 656 YRGAPAAVVVYDITSQTSFSRAQAWVKELTQQANSQIVIALVGNKADMASEGRVIPTEV- 714
Query: 156 HLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS-DKRQVSTEEGERKAKELNV 214
SF + +W ++ GS I+L+GNK+DLS D R V E+G+ A +
Sbjct: 715 --------SFKEAQRWTREIIDFGGSCSYIILLGNKSDLSNDLRAVPYEDGKEFASNNGL 766
Query: 215 MFIETSAKAGYNVKQV 230
MF E SAK G NV V
Sbjct: 767 MFTEVSAKTGMNVDDV 782
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 75/168 (44%), Gaps = 43/168 (25%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N ++ +WDTAGQER+ SL P Y R + AVVVYDIT+ SF + W+ ++ + S
Sbjct: 631 NSTAIKFDIWDTAGQERYHSLAPMYYRGAPAAVVVYDITSQTSFSRAQAWVKELTQQANS 690
Query: 286 DVIIMLVGNKTDLS-------------------------------------------DKR 302
++I LVGNK D++ D R
Sbjct: 691 QIVIALVGNKADMASEGRVIPTEVSFKEAQRWTREIIDFGGSCSYIILLGNKSDLSNDLR 750
Query: 303 QVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTEN 350
V E+G+ A +MF E SAK G NV +F +AA + S E+
Sbjct: 751 AVPYEDGKEFASNNGLMFTEVSAKTGMNVDDVFTNLAAKIAAQSSPES 798
>gi|344241420|gb|EGV97523.1| Ras-related protein Rab-8A [Cricetulus griseus]
Length = 236
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 112/190 (58%), Gaps = 16/190 (8%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ R V + LS H
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIEELR--------VQQWGVGYQPLSSPH----- 125
Query: 167 QTSKWIDDVRTER--GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
T+ +R+ + +DV M++GNK D++DKRQVS E GE+ A + + F+ETSAKA
Sbjct: 126 -TAAVTLIIRSPQHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKAN 184
Query: 225 YNVKQVRLQL 234
NV+ L
Sbjct: 185 INVENAFFTL 194
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 77/141 (54%), Gaps = 29/141 (20%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER---- 283
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ R
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEELRVQQW 114
Query: 284 -------------------------GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV 318
+DV M++GNK D++DKRQVS E GE+ A + +
Sbjct: 115 GVGYQPLSSPHTAAVTLIIRSPQHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGI 174
Query: 319 MFIETSAKAGYNVKQLFRRVA 339
F+ETSAKA NV+ F +A
Sbjct: 175 KFMETSAKANINVENAFFTLA 195
>gi|169617289|ref|XP_001802059.1| hypothetical protein SNOG_11822 [Phaeosphaeria nodorum SN15]
gi|160703379|gb|EAT80866.2| hypothetical protein SNOG_11822 [Phaeosphaeria nodorum SN15]
Length = 261
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 116/221 (52%), Gaps = 18/221 (8%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
P KLV LGE +VGK R + + + I+ ++SL+ RF+ + F + TI
Sbjct: 10 PSSSVKLVLLGEAAVGKVYRTGRHIAE-----LRKLILSQSSLVMRFVNNDFQENKEPTI 64
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
G FL++ L RT++ ++WDTAGQERF SL P Y R++ A+VVYDIT +S +
Sbjct: 65 GAAFLTQKCNLPTRTIKFEIWDTAGQERFASLAPMYYRNAQAALVVYDITKPSSLTKAQH 124
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
W+ ++ + ++I LVG N + L+ + + DD G D
Sbjct: 125 WVAELHRQASPGIVIALVG----NKSDLATAGGEDVTEDA---DDAPAAEGEDA------ 171
Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
+ D +D R+V + + A+E +++F ETSAK G NV +V
Sbjct: 172 TEEDGADARRVPVKTAKAYAEEESLLFFETSAKTGQNVAEV 212
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 30/166 (18%)
Query: 206 ERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 265
E K + F+ + K + ++ ++WDTAGQERF SL P Y R++ A+VVYDIT
Sbjct: 58 ENKEPTIGAAFL--TQKCNLPTRTIKFEIWDTAGQERFASLAPMYYRNAQAALVVYDITK 115
Query: 266 ANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL--------------------------- 298
+S + W+ ++ + ++I LVGNK+DL
Sbjct: 116 PSSLTKAQHWVAELHRQASPGIVIALVGNKSDLATAGGEDVTEDADDAPAAEGEDATEED 175
Query: 299 -SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
+D R+V + + A+E +++F ETSAK G NV ++F +A A+P
Sbjct: 176 GADARRVPVKTAKAYAEEESLLFFETSAKTGQNVAEVFTAIANAIP 221
>gi|154421140|ref|XP_001583584.1| Ras family protein [Trichomonas vaginalis G3]
gi|72536124|gb|AAZ73170.1| small Rab GTPase Rab6b [Trichomonas vaginalis]
gi|121917826|gb|EAY22598.1| Ras family protein [Trichomonas vaginalis G3]
Length = 218
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 103/184 (55%), Gaps = 43/184 (23%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTS+I ++MYDS +Q T+GIDF +KT+ E +++R+Q+WDTAGQE+F SLIPSYI
Sbjct: 16 VGKTSIINQYMYDSVSADHQPTVGIDFFAKTVNYEGKSIRMQIWDTAGQEKFHSLIPSYI 75
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
RDSTVA+ V+DIT+ +SF KW
Sbjct: 76 RDSTVAIFVFDITSRSSFEDLEKWF----------------------------------- 100
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
K + D+ R +++VGNK DL +R+V+ ++ E+ A + +IETSA A N
Sbjct: 101 ---KMVLDIANPR-----LIIVGNKCDLDAEREVTKDDAEKYAIIKSADYIETSAIAPTN 152
Query: 227 VKQV 230
+ ++
Sbjct: 153 ITEL 156
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 83/127 (65%), Gaps = 8/127 (6%)
Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW---IDDVRT 281
Y K +R+Q+WDTAGQE+F SLIPSYIRDSTVA+ V+DIT+ +SF KW + D+
Sbjct: 49 YEGKSIRMQIWDTAGQEKFHSLIPSYIRDSTVAIFVFDITSRSSFEDLEKWFKMVLDIAN 108
Query: 282 ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 341
R +++VGNK DL +R+V+ ++ E+ A + +IETSA A N+ +LF +A+
Sbjct: 109 PR-----LIIVGNKCDLDAEREVTKDDAEKYAIIKSADYIETSAIAPTNITELFNLIAST 163
Query: 342 LPGMDST 348
+ST
Sbjct: 164 PSESEST 170
>gi|50540198|ref|NP_001002566.1| ras-related protein Rab-10 [Danio rerio]
gi|49902983|gb|AAH76234.1| Zgc:92757 [Danio rerio]
Length = 201
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 102/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F+ T+ +TIGIDF KT+ L+ + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITNA SF SKW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNAKSFENISKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV ML+GNK D+ DKR V +GE+ AKE + F ETSAKA N
Sbjct: 113 --------------EDVERMLLGNKCDMEDKRVVPKAKGEQIAKEHGIRFFETSAKANIN 158
Query: 227 VKQVRLQL 234
+++ L L
Sbjct: 159 IEKAFLTL 166
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 80/126 (63%), Gaps = 2/126 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITNA SF SKW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
ML+GNK D+ DKR V +GE+ AKE + F ETSAKA N+++ F +A + +
Sbjct: 116 ERMLLGNKCDMEDKRVVPKAKGEQIAKEHGIRFFETSAKANINIEKAFLTLAEDI--LKK 173
Query: 348 TENKPP 353
T K P
Sbjct: 174 TPVKEP 179
>gi|401400583|ref|XP_003880812.1| rab22a, member RAS oncogene family, related [Neospora caninum
Liverpool]
gi|325115224|emb|CBZ50779.1| rab22a, member RAS oncogene family, related [Neospora caninum
Liverpool]
Length = 241
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/116 (51%), Positives = 83/116 (71%), Gaps = 3/116 (2%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT--ERGSDV 287
V+ ++WDTAGQER+RSL P Y R + AVVVYDI+N +SF W+ +++T +R S+V
Sbjct: 92 VKFEIWDTAGQERYRSLAPMYYRGAAAAVVVYDISNRDSFQGAKSWVQELQTVNDR-SNV 150
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
+I L GNK DL +RQV +E ++ A E ++FIETSAK G+NV +LF +AAALP
Sbjct: 151 VIALAGNKEDLGAERQVPKQEAQQYADEHGILFIETSAKTGHNVNELFYEIAAALP 206
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 108/217 (49%), Gaps = 48/217 (22%)
Query: 16 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLS 75
L + GE+ G+ F +T VGK+ L+ RF D F ++TIG F++
Sbjct: 27 LGYRGERPAGEVPKTLHFKLVLLGDT----SVGKSCLVVRFAKDEFYEYQESTIGAAFMT 82
Query: 76 KTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135
+++ L V+ ++WDTAGQER+RSL P Y R + AVVVYDI+N +SF W+ +++
Sbjct: 83 QSVDLGSCIVKFEIWDTAGQERYRSLAPMYYRGAAAAVVVYDISNRDSFQGAKSWVQELQ 142
Query: 136 T--ERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
T +R S+V+I L GNK D
Sbjct: 143 TVNDR-SNVVIAL-----------------------------------------AGNKED 160
Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
L +RQV +E ++ A E ++FIETSAK G+NV ++
Sbjct: 161 LGAERQVPKQEAQQYADEHGILFIETSAKTGHNVNEL 197
>gi|124505771|ref|XP_001350999.1| Rab5c, GTPase [Plasmodium falciparum 3D7]
gi|23510642|emb|CAD49027.1| Rab5c, GTPase [Plasmodium falciparum 3D7]
Length = 214
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 79/124 (63%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
++ ++WDTAGQER+RSL P Y R ++ AV+VYDITN SF WI ++++ +D+II
Sbjct: 76 IKFEIWDTAGQERYRSLAPMYYRGASAAVIVYDITNKKSFEGAKGWIHELKSVHSNDIII 135
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
L GNK DL + R V E E A N++FIETSAK G NV +LF R+A LP +
Sbjct: 136 ALAGNKNDLEEHRAVDRELAESFANSNNILFIETSAKTGQNVNELFLRIAKKLPLHKKEQ 195
Query: 350 NKPP 353
+ P
Sbjct: 196 ERCP 199
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 97/190 (51%), Gaps = 41/190 (21%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ ++ RF + F ++TIG F+++ + + + T++ ++WDTAGQER+RSL P
Sbjct: 36 TSVGKSCIVVRFAKNEFYEYQESTIGAAFMTQLIDIGECTIKFEIWDTAGQERYRSLAPM 95
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R ++ AV+VYDITN SF WI ++++ +D+II
Sbjct: 96 YYRGASAAVIVYDITNKKSFEGAKGWIHELKSVHSNDIII-------------------- 135
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
L GNK DL + R V E E A N++FIETSAK G
Sbjct: 136 ---------------------ALAGNKNDLEEHRAVDRELAESFANSNNILFIETSAKTG 174
Query: 225 YNVKQVRLQL 234
NV ++ L++
Sbjct: 175 QNVNELFLRI 184
>gi|348504692|ref|XP_003439895.1| PREDICTED: ras-related protein Rab-8A-like [Oreochromis niloticus]
Length = 206
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 104/188 (55%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+
Sbjct: 79 RGAMGIMLVYDITNEKSFENIKNWIRNIE------------------------EHAS--- 111
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+DV M++GNK D++DKRQVS E GE+ A E + F+ETSAKA N
Sbjct: 112 --------------ADVERMVLGNKCDVNDKRQVSKERGEKLALEYGIKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
V+ L L
Sbjct: 158 VENAFLTL 165
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 76/112 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIKNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E GE+ A E + F+ETSAKA NV+ F +A
Sbjct: 115 ERMVLGNKCDVNDKRQVSKERGEKLALEYGIKFMETSAKANINVENAFLTLA 166
>gi|440295423|gb|ELP88336.1| GTP-binding protein ryH1, putative [Entamoeba invadens IP1]
Length = 197
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 129/265 (48%), Gaps = 78/265 (29%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
NP RK+K+VF+G+ SVGKT +I RFM F N Y+AT
Sbjct: 2 NPTRKYKVVFIGDSSVGKTCIIG-----------------------RFMSGMFVNEYEAT 38
Query: 69 IGIDFLSKTMYLEDRT---VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 125
+G DF SK + +D+T V+LQ+WDTAGQE++ SLIPSYIR+S VAVVVYDI++ +SF+
Sbjct: 39 VGTDFSSK-LVTDDKTKQTVQLQIWDTAGQEKYHSLIPSYIRESRVAVVVYDISDRDSFN 97
Query: 126 QTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVII 185
+WI V++E DV + L
Sbjct: 98 DLDEWISLVKSEEKKDVFLFL--------------------------------------- 118
Query: 186 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRS 245
VGNK D+ KR+V+ +E KA ETSAK N+ ++ A ER S
Sbjct: 119 --VGNKNDIG-KREVTQKEALDKADYYQCQSFETSAKENCNITELF-----KAITERLCS 170
Query: 246 LIPSYIRDSTVAVVVYDITNANSFH 270
+ P I + +V V IT +NS +
Sbjct: 171 IEP--ISEDSVETV--SITESNSVN 191
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 79/117 (67%), Gaps = 1/117 (0%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+LQ+WDTAGQE++ SLIPSYIR+S VAVVVYDI++ +SF+ +WI V++E DV +
Sbjct: 57 VQLQIWDTAGQEKYHSLIPSYIRESRVAVVVYDISDRDSFNDLDEWISLVKSEEKKDVFL 116
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
LVGNK D+ KR+V+ +E KA ETSAK N+ +LF+ + L ++
Sbjct: 117 FLVGNKNDIG-KREVTQKEALDKADYYQCQSFETSAKENCNITELFKAITERLCSIE 172
>gi|452847264|gb|EME49196.1| hypothetical protein DOTSEDRAFT_68068 [Dothistroma septosporum
NZE10]
Length = 224
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 113/228 (49%), Gaps = 69/228 (30%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G +FKLV LGE + VGK+SL+ RF+ D FD+ ++
Sbjct: 13 GARFAQFKLVLLGE-----------------------SAVGKSSLVLRFVKDQFDDYRES 49
Query: 68 TIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 126
TIG FL++T+ L+++T V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S +
Sbjct: 50 TIGAAFLTQTIALDEQTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDK 109
Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
W+ +++ + ++II
Sbjct: 110 AKAWVKELQRQANENIII-----------------------------------------A 128
Query: 187 LVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
L GNK DL DKR V T + E AKE N++F ETSAK NVK++
Sbjct: 129 LAGNKADLVAEQPDKRAVPTTDAEAYAKEANLLFFETSAKTAENVKEL 176
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 82/134 (61%), Gaps = 11/134 (8%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S + W+ +++ + ++II
Sbjct: 68 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKAWVKELQRQANENIII 127
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP-- 343
L GNK DL DKR V T + E AKE N++F ETSAK NVK+LF +A LP
Sbjct: 128 ALAGNKADLVAEQPDKRAVPTTDAEAYAKEANLLFFETSAKTAENVKELFTAIAKKLPIE 187
Query: 344 -----GMDSTENKP 352
GM +P
Sbjct: 188 QASQRGMRGAAGRP 201
>gi|452988143|gb|EME87898.1| hypothetical protein MYCFIDRAFT_70384 [Pseudocercospora fijiensis
CIRAD86]
Length = 222
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 112/228 (49%), Gaps = 69/228 (30%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G +FKLV LGE +VGK+SL+ RF+ D FD+ ++
Sbjct: 11 GARFAQFKLVLLGESAVGKSSLVL-----------------------RFVKDQFDDYRES 47
Query: 68 TIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 126
TIG FL++T+ L+++T V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A S +
Sbjct: 48 TIGAAFLTQTIALDEQTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQAASLEK 107
Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
W+ +++ + ++II
Sbjct: 108 AKAWVKELQRQANENIII-----------------------------------------A 126
Query: 187 LVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
L GNK DL DKR VST + E AKE ++F ETSAK NVK++
Sbjct: 127 LAGNKADLVAEQPDKRAVSTADAEAYAKEAGLLFFETSAKTAENVKEL 174
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 81/134 (60%), Gaps = 11/134 (8%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A S + W+ +++ + ++II
Sbjct: 66 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQAASLEKAKAWVKELQRQANENIII 125
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP-- 343
L GNK DL DKR VST + E AKE ++F ETSAK NVK+LF +A LP
Sbjct: 126 ALAGNKADLVAEQPDKRAVSTADAEAYAKEAGLLFFETSAKTAENVKELFTAIAKKLPIE 185
Query: 344 -----GMDSTENKP 352
GM +P
Sbjct: 186 QATQRGMRGAAGRP 199
>gi|9988838|gb|AAG10794.1|AF296447_1 Rab5 [Toxoplasma gondii]
Length = 240
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 94/144 (65%), Gaps = 6/144 (4%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ F+ S G + V+ ++WDTAGQER+RSL P Y R + AVVVYDI+N +SF
Sbjct: 77 IGAAFMTQSVNLGSCI--VKFEIWDTAGQERYRSLAPMYYRGAAAAVVVYDISNRDSFQG 134
Query: 272 TSKWIDDVRT--ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 329
W+ ++++ +R S+V+I L GNK DL+ +RQV +E ++ A E ++F+ETSAK G+
Sbjct: 135 AKSWVQELQSVNDR-SNVVIALAGNKEDLAAERQVPKQEAQQYADEHGILFLETSAKTGH 193
Query: 330 NVKQLFRRVAAALPGMDSTENKPP 353
NV +LF +AAALP E+ PP
Sbjct: 194 NVNELFYEIAAALP-KTRKEHDPP 216
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 100/188 (53%), Gaps = 44/188 (23%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ L+ RF D F ++TIG F+++++ L V+ ++WDTAGQER+RSL P
Sbjct: 53 TSVGKSCLVVRFAKDEFYEYQESTIGAAFMTQSVNLGSCIVKFEIWDTAGQERYRSLAPM 112
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRT--ERGSDVIIMLVGSIETNFTHLSFHHA 162
Y R + AVVVYDI+N +SF W+ ++++ +R S+V+I L
Sbjct: 113 YYRGAAAAVVVYDISNRDSFQGAKSWVQELQSVNDR-SNVVIAL---------------- 155
Query: 163 NSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
GNK DL+ +RQV +E ++ A E ++F+ETSAK
Sbjct: 156 -------------------------AGNKEDLAAERQVPKQEAQQYADEHGILFLETSAK 190
Query: 223 AGYNVKQV 230
G+NV ++
Sbjct: 191 TGHNVNEL 198
>gi|443688647|gb|ELT91272.1| hypothetical protein CAPTEDRAFT_159217 [Capitella teleta]
Length = 206
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 104/183 (56%), Gaps = 41/183 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ LE + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELEGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF+ WI ++ HA++
Sbjct: 79 RGAMGIMLVYDITNEKSFYNIRTWIRNIE------------------------EHASN-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++D+RQVS E+GE A E V F+ETSAKA N
Sbjct: 113 ---------------DVEKMILGNKCDMNDRRQVSKEKGEALAVEYGVKFLETSAKASIN 157
Query: 227 VKQ 229
V++
Sbjct: 158 VEE 160
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 78/112 (69%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF+ WI ++ +DV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFYNIRTWIRNIEEHASNDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++D+RQVS E+GE A E V F+ETSAKA NV++ F +A
Sbjct: 115 EKMILGNKCDMNDRRQVSKEKGEALAVEYGVKFLETSAKASINVEEGFISLA 166
>gi|348505868|ref|XP_003440482.1| PREDICTED: ras-related protein Rab-8B-like [Oreochromis niloticus]
Length = 207
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 102/184 (55%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF DSF+ T+ +TIGIDF +T+ L+ + V+LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDSFNTTFISTIGIDFKIRTIELDGKRVKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDI N SF WI ++ HA+S
Sbjct: 79 RGAMGIMLVYDICNEKSFENIKNWIRNIE------------------------EHASS-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++D+RQVS + GE+ A + V F+ETSAK+G N
Sbjct: 113 ---------------DVEKMILGNKCDMTDRRQVSKDRGEKLAIDYGVKFLETSAKSGLN 157
Query: 227 VKQV 230
V++
Sbjct: 158 VEEA 161
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 75/108 (69%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+V+LQ+WDTAGQERFR++ +Y R + ++VYDI N SF WI ++ SDV
Sbjct: 55 KRVKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDICNEKSFENIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
M++GNK D++D+RQVS + GE+ A + V F+ETSAK+G NV++ F
Sbjct: 115 EKMILGNKCDMTDRRQVSKDRGEKLAIDYGVKFLETSAKSGLNVEEAF 162
>gi|308321720|gb|ADO28003.1| ras-related protein rab-10 [Ictalurus furcatus]
Length = 200
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 106/200 (53%), Gaps = 46/200 (23%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F+ T+ +TIGIDF KT+ L + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELNGKRIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITNA SF SKW+ ++ HAN
Sbjct: 80 RGAMGILLVYDITNAKSFENISKWLRNIE------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV ML+GNK D+ D R VS +GE+ A E N+ F ETSAKA N
Sbjct: 113 --------------EDVEKMLLGNKCDMEDVRVVSKAKGEQIASEHNIRFFETSAKANIN 158
Query: 227 VKQVRLQLWD-----TAGQE 241
+++ L L + T G+E
Sbjct: 159 IEKAFLTLAEDILHKTPGKE 178
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 81/128 (63%), Gaps = 2/128 (1%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N K+++LQ+WDTAGQERF ++ SY R + ++VYDITNA SF SKW+ ++
Sbjct: 54 NGKRIKLQIWDTAGQERFHTITTSYYRGAMGILLVYDITNAKSFENISKWLRNIEEHANE 113
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
DV ML+GNK D+ D R VS +GE+ A E N+ F ETSAKA N+++ F +A + +
Sbjct: 114 DVEKMLLGNKCDMEDVRVVSKAKGEQIASEHNIRFFETSAKANINIEKAFLTLAEDI--L 171
Query: 346 DSTENKPP 353
T K P
Sbjct: 172 HKTPGKEP 179
>gi|402222754|gb|EJU02820.1| GTP-binding protein RAB5 [Dacryopinax sp. DJM-731 SS1]
Length = 208
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 109/219 (49%), Gaps = 65/219 (29%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+FKLV LGE + VGK+SL+ RF+ D FD+ ++TIG
Sbjct: 6 QFKLVLLGE-----------------------SAVGKSSLVLRFVKDQFDDYRESTIGAA 42
Query: 73 FLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
FL++T+ LED TV+ ++WDTAGQER++SL P Y R + A+ VYDIT + S + WI
Sbjct: 43 FLTQTVQLEDGTTVKFEIWDTAGQERYKSLAPMYYRSAACAICVYDITQSASLEKAKSWI 102
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
+++ + ++I L GNK
Sbjct: 103 RELQRQADPSIVI-----------------------------------------ALCGNK 121
Query: 192 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
+DL+ +RQVS EE ++ A+E +M+ ETSAK G V ++
Sbjct: 122 SDLAARRQVSQEEAQKFAEEEGLMWCETSAKTGEGVNEI 160
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 77/114 (67%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R + A+ VYDIT + S + WI +++ + ++I
Sbjct: 56 VKFEIWDTAGQERYKSLAPMYYRSAACAICVYDITQSASLEKAKSWIRELQRQADPSIVI 115
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK+DL+ +RQVS EE ++ A+E +M+ ETSAK G V ++F R+A LP
Sbjct: 116 ALCGNKSDLAARRQVSQEEAQKFAEEEGLMWCETSAKTGEGVNEIFDRIAHKLP 169
>gi|302783080|ref|XP_002973313.1| rab family GTPase [Selaginella moellendorffii]
gi|300159066|gb|EFJ25687.1| rab family GTPase [Selaginella moellendorffii]
Length = 221
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 103/184 (55%), Gaps = 41/184 (22%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
+ VGK++L+TR+ + F+ +ATIG++F +++M + + V+ Q+WDTAGQERFR++ +
Sbjct: 22 SAVGKSNLLTRYARNEFNQNSKATIGVEFQTQSMRINGKEVKAQVWDTAGQERFRAVTSA 81
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R + A+VVYDIT +
Sbjct: 82 YYRGALGALVVYDIT-----------------------------------------RKQT 100
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
F SKW+D++RT GS V+ MLVGNK DL++ R+VS EEG+ A+ N+ F+ETSA A
Sbjct: 101 FENISKWLDELRTYGGSSVVTMLVGNKCDLTNIREVSVEEGKELAESENLFFMETSALAS 160
Query: 225 YNVK 228
NVK
Sbjct: 161 TNVK 164
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 81/113 (71%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N K+V+ Q+WDTAGQERFR++ +Y R + A+VVYDIT +F SKW+D++RT GS
Sbjct: 58 NGKEVKAQVWDTAGQERFRAVTSAYYRGALGALVVYDITRKQTFENISKWLDELRTYGGS 117
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
V+ MLVGNK DL++ R+VS EEG+ A+ N+ F+ETSA A NVK F+ V
Sbjct: 118 SVVTMLVGNKCDLTNIREVSVEEGKELAESENLFFMETSALASTNVKTAFQNV 170
>gi|425765692|gb|EKV04360.1| RAB GTPase Ypt5, putative [Penicillium digitatum Pd1]
gi|425779183|gb|EKV17266.1| RAB GTPase Ypt5, putative [Penicillium digitatum PHI26]
Length = 242
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 125/249 (50%), Gaps = 56/249 (22%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G +FKLV LGE +VGK T D + T + ++SL+ RF+ D FD+ ++
Sbjct: 12 GARFAQFKLVLLGESAVGKVWDTT---CDLLLSAADLTAIFQSSLVLRFVKDQFDDYRES 68
Query: 68 TIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 126
TIG FL++T+ L+D T V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S +
Sbjct: 69 TIGAAFLTQTISLDDTTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDK 128
Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
W+ +++ + +++I
Sbjct: 129 AKSWVKELQRQANENIVI-----------------------------------------A 147
Query: 187 LVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV------RLQLWD 236
L GNK DL DKR + + E A+E ++F ETSAK+ NVK++ +L L D
Sbjct: 148 LAGNKLDLVTESPDKRAIQEADAEAYAREAGLLFFETSAKSSTNVKELFTAIAKKLPL-D 206
Query: 237 TAGQERFRS 245
AG R+
Sbjct: 207 QAGSRNLRA 215
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 77/118 (65%), Gaps = 4/118 (3%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S + W+ +++ + +++I
Sbjct: 87 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKSWVKELQRQANENIVI 146
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL DKR + + E A+E ++F ETSAK+ NVK+LF +A LP
Sbjct: 147 ALAGNKLDLVTESPDKRAIQEADAEAYAREAGLLFFETSAKSSTNVKELFTAIAKKLP 204
>gi|398403677|ref|XP_003853305.1| ras small GTPase related protein [Zymoseptoria tritici IPO323]
gi|339473187|gb|EGP88281.1| ras small GTPase related protein [Zymoseptoria tritici IPO323]
Length = 225
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 113/228 (49%), Gaps = 69/228 (30%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G +FKLV LGE + VGK+SL+ RF+ D FD+ ++
Sbjct: 13 GARFAQFKLVLLGE-----------------------SAVGKSSLVLRFVKDQFDDYRES 49
Query: 68 TIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 126
TIG FL++T+ L+++T V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S +
Sbjct: 50 TIGAAFLTQTIALDEQTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDK 109
Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
W+ +++ + ++II
Sbjct: 110 AKAWVKELQRQANENIII-----------------------------------------A 128
Query: 187 LVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
L GNK DL DKR V T + E A+E N++F ETSAK NVK++
Sbjct: 129 LAGNKADLVAEQPDKRAVPTADAEAYAREANLLFFETSAKTAENVKEL 176
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 82/134 (61%), Gaps = 11/134 (8%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S + W+ +++ + ++II
Sbjct: 68 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKAWVKELQRQANENIII 127
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP-- 343
L GNK DL DKR V T + E A+E N++F ETSAK NVK+LF +A LP
Sbjct: 128 ALAGNKADLVAEQPDKRAVPTADAEAYAREANLLFFETSAKTAENVKELFTAIAKKLPIE 187
Query: 344 -----GMDSTENKP 352
GM +P
Sbjct: 188 QASQRGMRGAAGRP 201
>gi|147905945|ref|NP_001087181.1| RAB8B, member RAS oncogene family [Xenopus laevis]
gi|50604253|gb|AAH78133.1| Rab8b-prov protein [Xenopus laevis]
Length = 207
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 103/183 (56%), Gaps = 41/183 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+S
Sbjct: 79 RGAMGIMLVYDITNEKSFENIKNWIRNIE------------------------EHASS-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E+GE+ A + + F+ETSAK+ N
Sbjct: 113 ---------------DVERMILGNKCDMNDKRQVSREKGEKLAIDYGIKFLETSAKSSIN 157
Query: 227 VKQ 229
V++
Sbjct: 158 VEE 160
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 78/112 (69%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E+GE+ A + + F+ETSAK+ NV++ F +A
Sbjct: 115 ERMILGNKCDMNDKRQVSREKGEKLAIDYGIKFLETSAKSSINVEEGFFTLA 166
>gi|348517548|ref|XP_003446295.1| PREDICTED: ras-related protein Rab-10-like [Oreochromis niloticus]
Length = 201
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 102/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F+ T+ +TIGIDF KT+ L+ + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITNA SF SKW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNAKSFENISKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV ML+GNK D+ DKR V +GE+ A+E + F ETSAKA N
Sbjct: 113 --------------EDVERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANIN 158
Query: 227 VKQVRLQL 234
+++ L L
Sbjct: 159 IEKAFLTL 166
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 75/112 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITNA SF SKW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
ML+GNK D+ DKR V +GE+ A+E + F ETSAKA N+++ F +A
Sbjct: 116 ERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANINIEKAFLTLA 167
>gi|148229101|ref|NP_001083268.1| RAB10, member RAS oncogene family [Xenopus laevis]
gi|37747686|gb|AAH60015.1| MGC68629 protein [Xenopus laevis]
Length = 200
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 102/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F+ T+ +TIGIDF KT+ L+ + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITNA SF SKW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNAKSFENISKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV ML+GNK D+ DKR V +GE+ A+E + F ETSAKA N
Sbjct: 113 --------------EDVERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANVN 158
Query: 227 VKQVRLQL 234
+++ L L
Sbjct: 159 IEKAFLTL 166
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 75/112 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITNA SF SKW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
ML+GNK D+ DKR V +GE+ A+E + F ETSAKA N+++ F +A
Sbjct: 116 ERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANVNIEKAFLTLA 167
>gi|47222415|emb|CAG12935.1| unnamed protein product [Tetraodon nigroviridis]
Length = 200
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 102/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F+ T+ +TIGIDF KT+ L+ + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITNA SF SKW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNAKSFENISKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV ML+GNK D+ DKR V +GE+ A+E + F ETSAKA N
Sbjct: 113 --------------EDVERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANIN 158
Query: 227 VKQVRLQL 234
+++ L L
Sbjct: 159 IEKAFLTL 166
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 80/126 (63%), Gaps = 2/126 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITNA SF SKW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
ML+GNK D+ DKR V +GE+ A+E + F ETSAKA N+++ F +A + +
Sbjct: 116 ERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDI--LKK 173
Query: 348 TENKPP 353
T K P
Sbjct: 174 TPVKEP 179
>gi|410916971|ref|XP_003971960.1| PREDICTED: LOW QUALITY PROTEIN: ras-related protein Rab-10-like
[Takifugu rubripes]
Length = 201
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 102/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F+ T+ +TIGIDF KT+ L+ + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITNA SF SKW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNAKSFENISKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV ML+GNK D+ DKR V +GE+ A+E + F ETSAKA N
Sbjct: 113 --------------EDVERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANIN 158
Query: 227 VKQVRLQL 234
+++ L L
Sbjct: 159 IEKAFLTL 166
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 75/112 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITNA SF SKW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
ML+GNK D+ DKR V +GE+ A+E + F ETSAKA N+++ F +A
Sbjct: 116 ERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANINIEKAFLTLA 167
>gi|299756416|ref|XP_001829316.2| GTP-binding protein RAB5 [Coprinopsis cinerea okayama7#130]
gi|298411667|gb|EAU92276.2| GTP-binding protein RAB5 [Coprinopsis cinerea okayama7#130]
Length = 206
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 112/219 (51%), Gaps = 65/219 (29%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+FKLV LGE + VGK+SL+ RF+ D FD+ ++TIG
Sbjct: 6 QFKLVLLGE-----------------------SAVGKSSLVLRFVKDQFDDYRESTIGAA 42
Query: 73 FLSKTMYLEDR-TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
FL++T+ L+D+ TV+ ++WDTAGQER++SL P Y R++ AVVVYDIT + S + WI
Sbjct: 43 FLTQTVTLDDQSTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQSASLEKARTWI 102
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
+++ + ++I L GNK
Sbjct: 103 RELQRQADPSIVI-----------------------------------------ALCGNK 121
Query: 192 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
DL+ +RQVS EE ++ A+E +M+ ETSAK G V+++
Sbjct: 122 LDLAARRQVSQEEAQKYAEEEGLMWAETSAKTGEGVQEI 160
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 78/114 (68%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT + S + WI +++ + ++I
Sbjct: 56 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQSASLEKARTWIRELQRQADPSIVI 115
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL+ +RQVS EE ++ A+E +M+ ETSAK G V+++F +A LP
Sbjct: 116 ALCGNKLDLAARRQVSQEEAQKYAEEEGLMWAETSAKTGEGVQEIFTAIAKKLP 169
>gi|260787287|ref|XP_002588685.1| hypothetical protein BRAFLDRAFT_131227 [Branchiostoma floridae]
gi|229273853|gb|EEN44696.1| hypothetical protein BRAFLDRAFT_131227 [Branchiostoma floridae]
Length = 203
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 100/188 (53%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F+ T+ +TIGIDF KT+ L + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCILFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF SKW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNPKSFDNISKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV ML+GNK D+ DKR V T+ GE AKE + F ETSAKA N
Sbjct: 113 --------------EDVERMLIGNKCDMEDKRIVGTDRGENIAKEHGIRFFETSAKANIN 158
Query: 227 VKQVRLQL 234
+++ + L
Sbjct: 159 IEKAFMTL 166
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 80/127 (62%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITN SF SKW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNPKSFDNISKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
ML+GNK D+ DKR V T+ GE AKE + F ETSAKA N+++ F +A +
Sbjct: 116 ERMLIGNKCDMEDKRIVGTDRGENIAKEHGIRFFETSAKANINIEKAFMTLAEDILRKTP 175
Query: 348 TENKPPE 354
+++ PE
Sbjct: 176 SKDSGPE 182
>gi|343962013|dbj|BAK62594.1| ras-related protein Rab-10 [Pan troglodytes]
Length = 200
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 102/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F+ T+ +TIGIDF KT+ L+ + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF SKW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNGKSFENISKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV ML+GNK D+ DKR V T +GE+ A+E + F ETSAKA N
Sbjct: 113 --------------EDVERMLLGNKCDMDDKRVVPTGKGEQIAREHGIRFFETSAKANIN 158
Query: 227 VKQVRLQL 234
+++ L L
Sbjct: 159 IEKAFLTL 166
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 75/112 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITN SF SKW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
ML+GNK D+ DKR V T +GE+ A+E + F ETSAKA N+++ F +A
Sbjct: 116 ERMLLGNKCDMDDKRVVPTGKGEQIAREHGIRFFETSAKANINIEKAFLTLA 167
>gi|281205133|gb|EFA79326.1| Rab GTPase [Polysphondylium pallidum PN500]
Length = 253
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 114/191 (59%), Gaps = 5/191 (2%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ L+ +F F + TIG++F ++ + ++++ ++LQ+WDTAGQE FRS+ S
Sbjct: 14 TGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNKPIKLQIWDTAGQESFRSITRS 73
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHA-- 162
Y R S A++VYDIT +F+ + W+ + ++ + + + + + H + H
Sbjct: 74 YYRGSAGALLVYDITRRETFNHLTCWLSKYKRKQNNTLQLAPPQNHDNCVPHSNLHLTWI 133
Query: 163 NSFHQTSKWIDDVRTERG---SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 219
++ Q W DDV R S++ I+L+GNK+DL KR VS EEG + A+E ++F+ET
Sbjct: 134 SAQCQMRFWADDVDDARAFANSNMTIILIGNKSDLEQKRAVSYEEGAKFAEENGLIFLET 193
Query: 220 SAKAGYNVKQV 230
SAK NV++
Sbjct: 194 SAKTAANVEEA 204
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 77/158 (48%), Gaps = 46/158 (29%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW------------ 275
K ++LQ+WDTAGQE FRS+ SY R S A++VYDIT +F+ + W
Sbjct: 52 KPIKLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRETFNHLTCWLSKYKRKQNNTL 111
Query: 276 ----------------------------------IDDVRTERGSDVIIMLVGNKTDLSDK 301
+DD R S++ I+L+GNK+DL K
Sbjct: 112 QLAPPQNHDNCVPHSNLHLTWISAQCQMRFWADDVDDARAFANSNMTIILIGNKSDLEQK 171
Query: 302 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
R VS EEG + A+E ++F+ETSAK NV++ F A
Sbjct: 172 RAVSYEEGAKFAEENGLIFLETSAKTAANVEEAFINTA 209
>gi|167539982|ref|XP_001741487.1| rab5 [Entamoeba dispar SAW760]
gi|165893902|gb|EDR22017.1| rab5, putative [Entamoeba dispar SAW760]
Length = 195
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 82/114 (71%), Gaps = 1/114 (0%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
++ ++WDTAGQER+ SL P Y R S A+VVYDIT+ +SF Q KWID++R G++ II
Sbjct: 57 IKFEIWDTAGQERYHSLTPMYYRGSNAALVVYDITSDSSFTQAKKWIDELRGS-GNEAII 115
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
LVGNK DL+D R ++ EE E A+ L++ +IETSAKA NV +LF ++A LP
Sbjct: 116 FLVGNKCDLADSRVITKEEAEGYARSLSIDYIETSAKANINVNELFDQIARKLP 169
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 106/202 (52%), Gaps = 49/202 (24%)
Query: 40 NTYQATIV-------GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92
NTYQ IV GK+S++ R D + + TIG FL+KT+ ++ T++ ++WDT
Sbjct: 5 NTYQFKIVLLGDSSVGKSSIVLRVCKDEYKEFQENTIGAAFLTKTLIVDGDTIKFEIWDT 64
Query: 93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIET 152
AGQER+ SL P Y R S A+VVYDIT+ +SF Q KWID++R G++ II L
Sbjct: 65 AGQERYHSLTPMYYRGSNAALVVYDITSDSSFTQAKKWIDELRGS-GNEAIIFL------ 117
Query: 153 NFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL 212
VGNK DL+D R ++ EE E A+ L
Sbjct: 118 -----------------------------------VGNKCDLADSRVITKEEAEGYARSL 142
Query: 213 NVMFIETSAKAGYNVKQVRLQL 234
++ +IETSAKA NV ++ Q+
Sbjct: 143 SIDYIETSAKANINVNELFDQI 164
>gi|291190144|ref|NP_001167084.1| ras-related protein Rab-8A [Salmo salar]
gi|223648024|gb|ACN10770.1| Ras-related protein Rab-8A [Salmo salar]
Length = 206
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 105/188 (55%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+++ ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDNKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA++
Sbjct: 79 RGAMGIMLVYDITNEKSFENIKNWIRNIE------------------------EHASA-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS + GE+ A E + F+ETSAKA N
Sbjct: 113 ---------------DVEKMVLGNKCDINDKRQVSKDRGEKLALEYGIKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
V+ L L
Sbjct: 158 VENSFLTL 165
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 76/112 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIKNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS + GE+ A E + F+ETSAKA NV+ F +A
Sbjct: 115 EKMVLGNKCDINDKRQVSKDRGEKLALEYGIKFMETSAKANINVENSFLTLA 166
>gi|140832723|gb|AAI35799.1| rab8b protein [Xenopus (Silurana) tropicalis]
Length = 205
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 104/188 (55%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 17 VGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 76
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+S
Sbjct: 77 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHASS-- 110
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E+GE+ A + + F+ETSAK+ N
Sbjct: 111 ---------------DVERMILGNKCDMNDKRQVSREKGEKLAIDYGIKFLETSAKSSIN 155
Query: 227 VKQVRLQL 234
V++ L
Sbjct: 156 VEEAFFTL 163
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 78/112 (69%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 53 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E+GE+ A + + F+ETSAK+ NV++ F +A
Sbjct: 113 ERMILGNKCDMNDKRQVSREKGEKLAIDYGIKFLETSAKSSINVEEAFFTLA 164
>gi|147903729|ref|NP_001090677.1| RAB8B, member RAS oncogene family [Xenopus (Silurana) tropicalis]
gi|117558080|gb|AAI27331.1| rab8b protein [Xenopus (Silurana) tropicalis]
Length = 207
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 104/188 (55%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+S
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHASS-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E+GE+ A + + F+ETSAK+ N
Sbjct: 113 ---------------DVERMILGNKCDMNDKRQVSREKGEKLAIDYGIKFLETSAKSSIN 157
Query: 227 VKQVRLQL 234
V++ L
Sbjct: 158 VEEAFFTL 165
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 78/112 (69%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E+GE+ A + + F+ETSAK+ NV++ F +A
Sbjct: 115 ERMILGNKCDMNDKRQVSREKGEKLAIDYGIKFLETSAKSSINVEEAFFTLA 166
>gi|148236958|ref|NP_001087273.1| RAB8B, member RAS oncogene family [Xenopus laevis]
gi|51873938|gb|AAH78493.1| MGC85265 protein [Xenopus laevis]
Length = 207
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 104/188 (55%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+S
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHASS-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E+GE+ A + + F+ETSAK+ N
Sbjct: 113 ---------------DVERMILGNKCDMNDKRQVSREKGEKLAIDYGIKFLETSAKSSIN 157
Query: 227 VKQVRLQL 234
V++ L
Sbjct: 158 VEEAFFTL 165
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 76/108 (70%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
M++GNK D++DKRQVS E+GE+ A + + F+ETSAK+ NV++ F
Sbjct: 115 ERMILGNKCDMNDKRQVSREKGEKLAIDYGIKFLETSAKSSINVEEAF 162
>gi|444728498|gb|ELW68955.1| Ras-related protein Rab-30 [Tupaia chinensis]
Length = 263
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 113/207 (54%), Gaps = 19/207 (9%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF F ATIG+DF+ KT+ + V+LQ+WDTAGQERFRS+ SY
Sbjct: 20 VGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIET-------NFTHLSF 159
R + ++ YDIT SF +W+ ++ + VI +L+ +T + T +
Sbjct: 80 RSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLLQIWDTAGQERFRSITQSYY 139
Query: 160 HHAN------------SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGER 207
AN SF +W+ ++ + VI +LVGNK DL+++R+VS + E
Sbjct: 140 RSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEE 199
Query: 208 KAKELNVMFIETSAKAGYNVKQVRLQL 234
++ ++ ++ETSAK NV+++ L L
Sbjct: 200 FSEAQDMYYLETSAKESDNVEKLFLDL 226
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 76/125 (60%)
Query: 218 ETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 277
E A V V LQ+WDTAGQERFRS+ SY R + ++ YDIT SF +W+
Sbjct: 106 EIEQYASNKVITVLLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLR 165
Query: 278 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR 337
++ + VI +LVGNK DL+++R+VS + E ++ ++ ++ETSAK NV++LF
Sbjct: 166 EIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLD 225
Query: 338 VAAAL 342
+A L
Sbjct: 226 LACRL 230
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N ++V+LQ+WDTAGQERFRS+ SY R + ++ YDIT SF +W+ ++ +
Sbjct: 54 NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASN 113
Query: 286 DVIIMLV 292
VI +L+
Sbjct: 114 KVITVLL 120
>gi|348522032|ref|XP_003448530.1| PREDICTED: ras-related protein Rab-8A-like [Oreochromis niloticus]
Length = 206
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 104/188 (55%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+
Sbjct: 79 RGAMGIMLVYDITNEKSFENIKNWIRNIE------------------------EHAS--- 111
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+DV M++GNK D++DKRQVS E GE+ A E + F+ETSAK+ N
Sbjct: 112 --------------ADVEKMVLGNKCDINDKRQVSKEMGEKLALEYGIKFMETSAKSNIN 157
Query: 227 VKQVRLQL 234
V+ L L
Sbjct: 158 VENAFLTL 165
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 76/112 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIKNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E GE+ A E + F+ETSAK+ NV+ F +A
Sbjct: 115 EKMVLGNKCDINDKRQVSKEMGEKLALEYGIKFMETSAKSNINVENAFLTLA 166
>gi|296483236|tpg|DAA25351.1| TPA: ras-related protein Rab-8B [Bos taurus]
gi|440907016|gb|ELR57209.1| Ras-related protein Rab-8B [Bos grunniens mutus]
Length = 207
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+S
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHASS-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ N
Sbjct: 113 ---------------DVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSMN 157
Query: 227 VKQVRLQL 234
V++ L
Sbjct: 158 VEEAFFTL 165
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 77/112 (68%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ NV++ F +A
Sbjct: 115 ERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSMNVEEAFFTLA 166
>gi|212275548|ref|NP_001130433.1| uncharacterized protein LOC100191530 [Zea mays]
gi|194689106|gb|ACF78637.1| unknown [Zea mays]
gi|414869113|tpg|DAA47670.1| TPA: ras protein RHN1 [Zea mays]
Length = 204
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 106/223 (47%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN +R KLV LG+ VG GK+SL+ RF+ F ++
Sbjct: 7 GNKIRNAKLVLLGD--VG---------------------AGKSSLVLRFVKGQFVEFQES 43
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG F S+T+ + D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITNA SF +
Sbjct: 44 TIGAAFFSQTLAVNDETVKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITNAASFTRA 103
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
KW+ +++ + S+ I+ L
Sbjct: 104 KKWVQELQAQGNSNTIV-----------------------------------------AL 122
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNK DL D RQVS +E + A+E + F+ETSAK NV V
Sbjct: 123 AGNKADLLDTRQVSADEAKAYAQENGLFFMETSAKTATNVNDV 165
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 83/138 (60%), Gaps = 9/138 (6%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N + V+ ++WDTAGQER+ SL P Y R + A+VVYDITNA SF + KW+ +++ + S
Sbjct: 57 NDETVKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITNAASFTRAKKWVQELQAQGNS 116
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
+ I+ L GNK DL D RQVS +E + A+E + F+ETSAK NV +F +A L
Sbjct: 117 NTIVALAGNKADLLDTRQVSADEAKAYAQENGLFFMETSAKTATNVNDVFYEIAKKLLQG 176
Query: 346 DSTEN---------KPPE 354
+N +PPE
Sbjct: 177 QQVQNPQGGMVLNQRPPE 194
>gi|209880089|ref|XP_002141484.1| Ras family protein [Cryptosporidium muris RN66]
gi|209557090|gb|EEA07135.1| Ras family protein [Cryptosporidium muris RN66]
Length = 219
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 81/114 (71%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+RSL P Y R + A+VVYDITN++SF WI ++++ +D++I
Sbjct: 63 VKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITNSDSFDGAKSWISELKSINNNDIVI 122
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
LVGNK DL R VS+E AKE +++++ETSAK G+NV+++F +A LP
Sbjct: 123 ALVGNKCDLEGNRTVSSEIARCYAKENDILYLETSAKTGHNVQEIFEEIARKLP 176
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 99/185 (53%), Gaps = 42/185 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSY 105
VGK+ L+ RF D F + TIG F+++++ ++D V+ ++WDTAGQER+RSL P Y
Sbjct: 24 VGKSCLVVRFAKDEFSEYQEPTIGAAFMTQSVNIDDDYIVKFEIWDTAGQERYRSLAPMY 83
Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
R + A+VVYDITN++SF WI ++++ +D++I L
Sbjct: 84 YRGAAAAIVVYDITNSDSFDGAKSWISELKSINNNDIVIAL------------------- 124
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 225
VGNK DL R VS+E AKE +++++ETSAK G+
Sbjct: 125 ----------------------VGNKCDLEGNRTVSSEIARCYAKENDILYLETSAKTGH 162
Query: 226 NVKQV 230
NV+++
Sbjct: 163 NVQEI 167
>gi|7706563|ref|NP_057614.1| ras-related protein Rab-8B [Homo sapiens]
gi|383872868|ref|NP_001244884.1| ras-related protein Rab-8B [Macaca mulatta]
gi|332235867|ref|XP_003267126.1| PREDICTED: ras-related protein Rab-8B isoform 1 [Nomascus
leucogenys]
gi|397515492|ref|XP_003827984.1| PREDICTED: ras-related protein Rab-8B isoform 1 [Pan paniscus]
gi|402874511|ref|XP_003901079.1| PREDICTED: ras-related protein Rab-8B isoform 1 [Papio anubis]
gi|13638434|sp|Q92930.2|RAB8B_HUMAN RecName: Full=Ras-related protein Rab-8B; Flags: Precursor
gi|7209512|dbj|BAA92249.1| RAB-8b protein [Homo sapiens]
gi|18088350|gb|AAH20654.1| RAB8B, member RAS oncogene family [Homo sapiens]
gi|57997184|emb|CAI46143.1| hypothetical protein [Homo sapiens]
gi|193785490|dbj|BAG50856.1| unnamed protein product [Homo sapiens]
gi|208967244|dbj|BAG73636.1| RAB8B, member RAS oncogene family [synthetic construct]
gi|312151528|gb|ADQ32276.1| RAB8B, member RAS oncogene family [synthetic construct]
gi|355692780|gb|EHH27383.1| Ras-related protein Rab-8B [Macaca mulatta]
gi|380784677|gb|AFE64214.1| ras-related protein Rab-8B [Macaca mulatta]
gi|383419143|gb|AFH32785.1| ras-related protein Rab-8B [Macaca mulatta]
gi|384947648|gb|AFI37429.1| ras-related protein Rab-8B [Macaca mulatta]
gi|410217818|gb|JAA06128.1| RAB8B, member RAS oncogene family [Pan troglodytes]
gi|410263584|gb|JAA19758.1| RAB8B, member RAS oncogene family [Pan troglodytes]
gi|410300636|gb|JAA28918.1| RAB8B, member RAS oncogene family [Pan troglodytes]
gi|410332985|gb|JAA35439.1| RAB8B, member RAS oncogene family [Pan troglodytes]
Length = 207
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+S
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHASS-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ N
Sbjct: 113 ---------------DVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSAN 157
Query: 227 VKQVRLQL 234
V++ L
Sbjct: 158 VEEAFFTL 165
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 77/112 (68%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ NV++ F +A
Sbjct: 115 ERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLA 166
>gi|405976260|gb|EKC40773.1| Ras-related protein Rab-10 [Crassostrea gigas]
Length = 212
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 102/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF KT+ L + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCLLFRFSDDAFNTTFISTIGIDFKIKTVELGGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN +F SKW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNPKTFENISKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D+ +KRQVS + GE AKE + F+ETSAKA N
Sbjct: 113 --------------EDVEKMILGNKCDMENKRQVSKDRGEAIAKEHEIPFLETSAKANIN 158
Query: 227 VKQVRLQL 234
V++ + L
Sbjct: 159 VEKAFMDL 166
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 82/127 (64%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITN +F SKW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNPKTFENISKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
M++GNK D+ +KRQVS + GE AKE + F+ETSAKA NV++ F +A A+
Sbjct: 116 EKMILGNKCDMENKRQVSKDRGEAIAKEHEIPFLETSAKANINVEKAFMDLAQAILNKSP 175
Query: 348 TENKPPE 354
+ + PE
Sbjct: 176 SRDTRPE 182
>gi|126277017|ref|XP_001366139.1| PREDICTED: ras-related protein Rab-8B-like [Monodelphis domestica]
Length = 207
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 104/188 (55%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+S
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHASS-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK+D++DKRQVS E GE+ A + + F+ETSAK+ N
Sbjct: 113 ---------------DVERMILGNKSDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSIN 157
Query: 227 VKQVRLQL 234
V++ L
Sbjct: 158 VEEAFFTL 165
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 78/112 (69%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK+D++DKRQVS E GE+ A + + F+ETSAK+ NV++ F +A
Sbjct: 115 ERMILGNKSDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSINVEEAFFTLA 166
>gi|350578544|ref|XP_001929064.4| PREDICTED: ras-related protein Rab-8B-like [Sus scrofa]
Length = 207
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 101/184 (54%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ SDV
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV------------------------ 114
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
ER M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ N
Sbjct: 115 -----------ER------MILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSMN 157
Query: 227 VKQV 230
V++
Sbjct: 158 VEEA 161
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 75/108 (69%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ NV++ F
Sbjct: 115 ERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSMNVEEAF 162
>gi|291402892|ref|XP_002718230.1| PREDICTED: RAB8B, member RAS oncogene family [Oryctolagus
cuniculus]
gi|354474332|ref|XP_003499385.1| PREDICTED: ras-related protein Rab-8B-like [Cricetulus griseus]
gi|410961066|ref|XP_003987106.1| PREDICTED: ras-related protein Rab-8B isoform 1 [Felis catus]
gi|344251051|gb|EGW07155.1| Ras-related protein Rab-8B [Cricetulus griseus]
gi|351698401|gb|EHB01320.1| Ras-related protein Rab-8B [Heterocephalus glaber]
gi|431895937|gb|ELK05355.1| Ras-related protein Rab-8B [Pteropus alecto]
Length = 207
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+S
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHASS-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ N
Sbjct: 113 ---------------DVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTN 157
Query: 227 VKQVRLQL 234
V++ L
Sbjct: 158 VEEAFFTL 165
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 77/112 (68%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ NV++ F +A
Sbjct: 115 ERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLA 166
>gi|23463313|ref|NP_695229.1| ras-related protein Rab-8B [Rattus norvegicus]
gi|27734154|ref|NP_775589.1| ras-related protein Rab-8B [Mus musculus]
gi|2500066|sp|P70550.1|RAB8B_RAT RecName: Full=Ras-related protein Rab-8B; Flags: Precursor
gi|46576875|sp|P61028.1|RAB8B_MOUSE RecName: Full=Ras-related protein Rab-8B; Flags: Precursor
gi|1314637|gb|AAA99782.1| GTPase Rab8b [Rattus norvegicus]
gi|26351205|dbj|BAC39239.1| unnamed protein product [Mus musculus]
gi|37589192|gb|AAH59208.1| RAB8B, member RAS oncogene family [Mus musculus]
gi|74212761|dbj|BAE33350.1| unnamed protein product [Mus musculus]
gi|112292971|dbj|BAF02863.1| Rab8B [Mus musculus]
gi|148694186|gb|EDL26133.1| RAB8B, member RAS oncogene family, isoform CRA_c [Mus musculus]
gi|149028910|gb|EDL84251.1| RAB8B, member RAS oncogene family, isoform CRA_a [Rattus
norvegicus]
gi|165970644|gb|AAI58580.1| RAB8B, member RAS oncogene family [Rattus norvegicus]
gi|187956868|gb|AAI57975.1| RAB8B, member RAS oncogene family [Mus musculus]
gi|335775450|gb|AEH58576.1| Ras-related protein Rab-8B-like protein [Equus caballus]
Length = 207
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+S
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHASS-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ N
Sbjct: 113 ---------------DVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTN 157
Query: 227 VKQVRLQL 234
V++ L
Sbjct: 158 VEEAFFTL 165
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 77/112 (68%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ NV++ F +A
Sbjct: 115 ERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLA 166
>gi|197100646|ref|NP_001124875.1| ras-related protein Rab-8B [Pongo abelii]
gi|395822281|ref|XP_003784449.1| PREDICTED: ras-related protein Rab-8B [Otolemur garnettii]
gi|403298222|ref|XP_003939929.1| PREDICTED: ras-related protein Rab-8B isoform 1 [Saimiri
boliviensis boliviensis]
gi|75070935|sp|Q5REC9.1|RAB8B_PONAB RecName: Full=Ras-related protein Rab-8B; Flags: Precursor
gi|55726211|emb|CAH89878.1| hypothetical protein [Pongo abelii]
Length = 207
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+S
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHASS-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ N
Sbjct: 113 ---------------DVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTN 157
Query: 227 VKQVRLQL 234
V++ L
Sbjct: 158 VEEAFFTL 165
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 77/112 (68%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ NV++ F +A
Sbjct: 115 ERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLA 166
>gi|296213405|ref|XP_002753255.1| PREDICTED: ras-related protein Rab-8B isoform 1 [Callithrix
jacchus]
Length = 207
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+S
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHASS-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ N
Sbjct: 113 ---------------DVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTN 157
Query: 227 VKQVRLQL 234
V++ L
Sbjct: 158 VEEAFFTL 165
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 77/112 (68%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ NV++ F +A
Sbjct: 115 ERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLA 166
>gi|410923995|ref|XP_003975467.1| PREDICTED: ras-related protein Rab-8A-like [Takifugu rubripes]
Length = 222
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 115/217 (52%), Gaps = 46/217 (21%)
Query: 23 SVGKTSLITRFMYDSFDNTYQATI-----VGKTSLITRFMYDSFDNTYQATIGIDFLSKT 77
S G S I M ++D ++ + VGKT ++ RF D+F++T+ +TIGIDF +T
Sbjct: 6 SSGGISAIISSMAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRT 65
Query: 78 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE 137
+ L+ + ++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++
Sbjct: 66 IELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIE-- 123
Query: 138 RGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 197
HA+ +DV M++GNK D++DK
Sbjct: 124 ----------------------EHAS-----------------ADVEKMVLGNKCDINDK 144
Query: 198 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
RQVS + GE+ A + + F+ETSAKA NV+ L L
Sbjct: 145 RQVSKDRGEQLALDYGIKFMETSAKANINVENAFLTL 181
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 76/112 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 71 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASADV 130
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS + GE+ A + + F+ETSAKA NV+ F +A
Sbjct: 131 EKMVLGNKCDINDKRQVSKDRGEQLALDYGIKFMETSAKANINVENAFLTLA 182
>gi|221502146|gb|EEE27890.1| RAB, putative [Toxoplasma gondii VEG]
Length = 241
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 92/140 (65%), Gaps = 5/140 (3%)
Query: 206 ERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 265
E + + F+ S G + V+ ++WDTAGQER+RSL P Y R + AVVVYDI+N
Sbjct: 71 EYQESTIGAAFMTQSVNLGSCI--VKFEIWDTAGQERYRSLAPMYYRGAAAAVVVYDISN 128
Query: 266 ANSFHQTSKWIDDVRT--ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323
+SF W+ ++++ +R S+V+I L GNK DL+ +RQV +E ++ A E ++F+ET
Sbjct: 129 RDSFQGAKSWVQELQSVNDR-SNVVIALAGNKEDLAAERQVPNQEAQQYADEHGILFLET 187
Query: 324 SAKAGYNVKQLFRRVAAALP 343
SAK G+NV +LF +AAALP
Sbjct: 188 SAKTGHNVNELFYEIAAALP 207
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 100/188 (53%), Gaps = 44/188 (23%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ L+ RF D F ++TIG F+++++ L V+ ++WDTAGQER+RSL P
Sbjct: 53 TSVGKSCLVVRFAKDEFYEYQESTIGAAFMTQSVNLGSCIVKFEIWDTAGQERYRSLAPM 112
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRT--ERGSDVIIMLVGSIETNFTHLSFHHA 162
Y R + AVVVYDI+N +SF W+ ++++ +R S+V+I L
Sbjct: 113 YYRGAAAAVVVYDISNRDSFQGAKSWVQELQSVNDR-SNVVIAL---------------- 155
Query: 163 NSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
GNK DL+ +RQV +E ++ A E ++F+ETSAK
Sbjct: 156 -------------------------AGNKEDLAAERQVPNQEAQQYADEHGILFLETSAK 190
Query: 223 AGYNVKQV 230
G+NV ++
Sbjct: 191 TGHNVNEL 198
>gi|301756855|ref|XP_002914277.1| PREDICTED: ras-related protein Rab-8B-like [Ailuropoda melanoleuca]
gi|281347305|gb|EFB22889.1| hypothetical protein PANDA_002150 [Ailuropoda melanoleuca]
Length = 207
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+S
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHASS-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ N
Sbjct: 113 ---------------DVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTN 157
Query: 227 VKQVRLQL 234
V++ L
Sbjct: 158 VEEAFFTL 165
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 77/112 (68%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ NV++ F +A
Sbjct: 115 ERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLA 166
>gi|77736431|ref|NP_001029915.1| ras-related protein Rab-5C [Bos taurus]
gi|346716331|ref|NP_001231183.1| ras-related protein Rab-5C [Sus scrofa]
gi|410981133|ref|XP_003996927.1| PREDICTED: ras-related protein Rab-5C [Felis catus]
gi|426238047|ref|XP_004012969.1| PREDICTED: ras-related protein Rab-5C [Ovis aries]
gi|75052596|sp|Q58DS9.1|RAB5C_BOVIN RecName: Full=Ras-related protein Rab-5C
gi|61553191|gb|AAX46365.1| RAB5C, member RAS oncogene family isoform b [Bos taurus]
gi|109659170|gb|AAI18227.1| RAB5C, member RAS oncogene family [Bos taurus]
gi|296476370|tpg|DAA18485.1| TPA: ras-related protein Rab-5C [Bos taurus]
gi|440903244|gb|ELR53931.1| Ras-related protein Rab-5C [Bos grunniens mutus]
Length = 216
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 110/223 (49%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEYQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALAG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL+ KR V +E + A++ +++F+ETSAK NV ++
Sbjct: 134 --NKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEI 174
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 83/138 (60%), Gaps = 15/138 (10%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP------ 343
L GNK DL+ KR V +E + A++ +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQN 189
Query: 344 ---------GMDSTENKP 352
G+D EN P
Sbjct: 190 AAGAPGRNRGVDLQENNP 207
>gi|417396973|gb|JAA45520.1| Putative rab subfamily protein of small gtpase [Desmodus rotundus]
Length = 200
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 101/188 (53%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F+ T+ +TIGIDF KT+ L+ + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF SKW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNGKSFENISKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV ML+GNK D+ DKR V +GE+ AKE + F ETSAKA N
Sbjct: 113 --------------EDVERMLLGNKCDMDDKRVVPKGKGEQIAKEHGIRFFETSAKANIN 158
Query: 227 VKQVRLQL 234
+++ L L
Sbjct: 159 IEKAFLTL 166
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 74/112 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITN SF SKW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
ML+GNK D+ DKR V +GE+ AKE + F ETSAKA N+++ F +A
Sbjct: 116 ERMLLGNKCDMDDKRVVPKGKGEQIAKEHGIRFFETSAKANINIEKAFLTLA 167
>gi|443710459|gb|ELU04712.1| hypothetical protein CAPTEDRAFT_155110 [Capitella teleta]
Length = 198
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 102/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF KT+ L + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCLLFRFSDDAFNTTFISTIGIDFKIKTVELGGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITNA +F SKW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNAKTFDNISKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D+ DKRQV + GE A+E + F+ETSAK+ N
Sbjct: 113 --------------EDVEKMILGNKCDIEDKRQVPKQRGESIAREHGIPFLETSAKSNVN 158
Query: 227 VKQVRLQL 234
V++ + L
Sbjct: 159 VEKAFMDL 166
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 78/115 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITNA +F SKW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKTFDNISKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
M++GNK D+ DKRQV + GE A+E + F+ETSAK+ NV++ F +A A+
Sbjct: 116 EKMILGNKCDIEDKRQVPKQRGESIAREHGIPFLETSAKSNVNVEKAFMDLAQAI 170
>gi|254573032|ref|XP_002493625.1| GTPase required for transport during endocytosis and for correct
sorting of vacuolar hydrolases [Komagataella pastoris
GS115]
gi|238033424|emb|CAY71446.1| GTPase required for transport during endocytosis and for correct
sorting of vacuolar hydrolases [Komagataella pastoris
GS115]
gi|328354547|emb|CCA40944.1| Ras-like GTP-binding protein YPT1 [Komagataella pastoris CBS 7435]
Length = 218
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 111/206 (53%), Gaps = 35/206 (16%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+SL+ RF+ + F + TIG FL++ + D+T++ ++WDTAGQERF+SL P Y
Sbjct: 20 VGKSSLVLRFVSNDFQENKEPTIGAAFLTQRCTIGDKTIKYEIWDTAGQERFQSLAPMYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R++ A+VVYD+T SF + W++++ + ++II L G N +
Sbjct: 80 RNAQAALVVYDVTKPKSFIKARHWVNELHEQASKNIIIALCG--------------NKYD 125
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+DV TE N+ D S KR+VS +EG+ A + ++F ETSAK G+N
Sbjct: 126 IVESEDNDVSTE-----------NEDDDSRKRKVSVQEGQTLADDEGLLFFETSAKTGFN 174
Query: 227 VKQVRLQLW----------DTAGQER 242
V +V + + AGQER
Sbjct: 175 VNEVFTTIGKHIPEATSSENAAGQER 200
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 93/169 (55%), Gaps = 18/169 (10%)
Query: 198 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVA 257
R VS + E K + F+ G K ++ ++WDTAGQERF+SL P Y R++ A
Sbjct: 28 RFVSNDFQENKEPTIGAAFLTQRCTIGD--KTIKYEIWDTAGQERFQSLAPMYYRNAQAA 85
Query: 258 VVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL----------------SDK 301
+VVYD+T SF + W++++ + ++II L GNK D+ S K
Sbjct: 86 LVVYDVTKPKSFIKARHWVNELHEQASKNIIIALCGNKYDIVESEDNDVSTENEDDDSRK 145
Query: 302 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTEN 350
R+VS +EG+ A + ++F ETSAK G+NV ++F + +P S+EN
Sbjct: 146 RKVSVQEGQTLADDEGLLFFETSAKTGFNVNEVFTTIGKHIPEATSSEN 194
>gi|428174756|gb|EKX43650.1| hypothetical protein GUITHDRAFT_159784 [Guillardia theta CCMP2712]
Length = 204
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 113/225 (50%), Gaps = 65/225 (28%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
PL FKLV LGE +VGK+SL+ RF+ F + ++TI
Sbjct: 8 PL-NFKLVLLGEGAVGKSSLVL-----------------------RFVRGQFFDYQESTI 43
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
G FL++T+ L D TV+ ++WDTAGQER+ SL P Y R + A+VVYDIT+ +SF +
Sbjct: 44 GAAFLTQTVALNDTTVKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITSTDSFARAKS 103
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
W+ +++ + +++I L G
Sbjct: 104 WVRELQRQGNPNIVI-----------------------------------------ALAG 122
Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NK+DL+ KR+V +E + A+E N+MF+ETSAK NV ++ +Q+
Sbjct: 123 NKSDLASKRKVEPDEARQYAEENNIMFMETSAKTASNVNELFVQI 167
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 84/123 (68%), Gaps = 1/123 (0%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDIT+ +SF + W+ +++ + +++I
Sbjct: 59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITSTDSFARAKSWVRELQRQGNPNIVI 118
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
L GNK+DL+ KR+V +E + A+E N+MF+ETSAK NV +LF ++A LP +
Sbjct: 119 ALAGNKSDLASKRKVEPDEARQYAEENNIMFMETSAKTASNVNELFVQIARKLPKQQQ-Q 177
Query: 350 NKP 352
+KP
Sbjct: 178 DKP 180
>gi|12832758|dbj|BAB22245.1| unnamed protein product [Mus musculus]
Length = 215
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 15 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEFQES 51
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 52 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 111
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ ++R + +++I L G
Sbjct: 112 KNWVKELRRQASPNIVIALSG--------------------------------------- 132
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 133 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI 173
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ ++R + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELRRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 182
>gi|300124329|gb|ADJ68051.1| Rab protein [Larimichthys crocea]
Length = 207
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ +DV
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASADV------------------------ 114
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
ER M++GNK D++DKRQVS + GE+ A E + F+ETSAKA N
Sbjct: 115 -----------ER------MVLGNKCDVNDKRQVSKDRGEKLALEYGIKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
V+ L L
Sbjct: 158 VENAFLHL 165
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 76/112 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS + GE+ A E + F+ETSAKA NV+ F +A
Sbjct: 115 ERMVLGNKCDVNDKRQVSKDRGEKLALEYGIKFMETSAKANINVENAFLHLA 166
>gi|149773480|ref|NP_001092729.1| ras-related protein Rab-8B [Danio rerio]
gi|148744724|gb|AAI42847.1| Rab8b protein [Danio rerio]
Length = 209
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 104/188 (55%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+S
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHASS-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ N
Sbjct: 113 ---------------DVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTN 157
Query: 227 VKQVRLQL 234
V++ + L
Sbjct: 158 VEEAFVTL 165
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 77/112 (68%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ NV++ F +A
Sbjct: 115 ERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFVTLA 166
>gi|47223089|emb|CAG07176.1| unnamed protein product [Tetraodon nigroviridis]
Length = 251
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 104/185 (56%), Gaps = 41/185 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA++
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHASA-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS + GE+ A + + F+ETSAKA N
Sbjct: 113 ---------------DVEKMVLGNKCDINDKRQVSKDRGEKLALDYGIKFMETSAKANIN 157
Query: 227 VKQVR 231
V+ VR
Sbjct: 158 VENVR 162
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 74/107 (69%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 334
M++GNK D++DKRQVS + GE+ A + + F+ETSAKA NV+ +
Sbjct: 115 EKMVLGNKCDINDKRQVSKDRGEKLALDYGIKFMETSAKANINVENV 161
>gi|387017924|gb|AFJ51080.1| ras-related protein Rab-10-like [Crotalus adamanteus]
Length = 189
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 102/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F+ T+ +TIGIDF KT+ L+ + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITNA SF SKW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNAKSFENISKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV ML+GNK D+ DKR V +GE+ A+E + F ETSAKA N
Sbjct: 113 --------------EDVERMLLGNKCDMDDKRVVPKAKGEQIAREHGIRFFETSAKANIN 158
Query: 227 VKQVRLQL 234
+++ L L
Sbjct: 159 IEKAFLTL 166
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 75/112 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITNA SF SKW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
ML+GNK D+ DKR V +GE+ A+E + F ETSAKA N+++ F +A
Sbjct: 116 ERMLLGNKCDMDDKRVVPKAKGEQIAREHGIRFFETSAKANINIEKAFLTLA 167
>gi|170587854|ref|XP_001898689.1| Ras-related protein Rab-5B [Brugia malayi]
gi|158593959|gb|EDP32553.1| Ras-related protein Rab-5B, putative [Brugia malayi]
Length = 217
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 113/233 (48%), Gaps = 66/233 (28%)
Query: 4 SGDFGNPLR--KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
SG+ G P + +FKLV LGE +VGK+SL+ RF+ F
Sbjct: 9 SGNTGGPSKTCQFKLVLLGESAVGKSSLVL-----------------------RFVKGQF 45
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
++TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN
Sbjct: 46 HEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQ 105
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF + W+ +++ + +++I
Sbjct: 106 ESFAKAKNWVKELQRQASPNIVI------------------------------------- 128
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
L GNK DL++KR V EE + A++ ++F+ETSAK NV + L +
Sbjct: 129 ----ALSGNKADLANKRVVEYEEAQAYAEDNALLFMETSAKTAMNVNDIFLAI 177
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 75/114 (65%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQESFAKAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V EE + A++ ++F+ETSAK NV +F +A LP
Sbjct: 129 ALSGNKADLANKRVVEYEEAQAYAEDNALLFMETSAKTAMNVNDIFLAIAKKLP 182
>gi|237839103|ref|XP_002368849.1| Rab 5 [Toxoplasma gondii ME49]
gi|211966513|gb|EEB01709.1| Rab 5 [Toxoplasma gondii ME49]
Length = 241
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 90/134 (67%), Gaps = 5/134 (3%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ F+ S G + V+ ++WDTAGQER+RSL P Y R + AVVVYDI+N +SF
Sbjct: 77 IGAAFMTQSVNLGSCI--VKFEIWDTAGQERYRSLAPMYYRGAAAAVVVYDISNRDSFQG 134
Query: 272 TSKWIDDVRT--ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 329
W+ ++++ +R S+V+I L GNK DL+ +RQV +E ++ A E ++F+ETSAK G+
Sbjct: 135 AKSWVQELQSVNDR-SNVVIALAGNKEDLAAERQVPKQEAQQYADEHGILFLETSAKTGH 193
Query: 330 NVKQLFRRVAAALP 343
NV +LF +AAALP
Sbjct: 194 NVNELFYEIAAALP 207
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 100/188 (53%), Gaps = 44/188 (23%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ L+ RF D F ++TIG F+++++ L V+ ++WDTAGQER+RSL P
Sbjct: 53 TSVGKSCLVVRFAKDEFYEYQESTIGAAFMTQSVNLGSCIVKFEIWDTAGQERYRSLAPM 112
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRT--ERGSDVIIMLVGSIETNFTHLSFHHA 162
Y R + AVVVYDI+N +SF W+ ++++ +R S+V+I L
Sbjct: 113 YYRGAAAAVVVYDISNRDSFQGAKSWVQELQSVNDR-SNVVIAL---------------- 155
Query: 163 NSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
GNK DL+ +RQV +E ++ A E ++F+ETSAK
Sbjct: 156 -------------------------AGNKEDLAAERQVPKQEAQQYADEHGILFLETSAK 190
Query: 223 AGYNVKQV 230
G+NV ++
Sbjct: 191 TGHNVNEL 198
>gi|367007916|ref|XP_003688687.1| hypothetical protein TPHA_0P00950 [Tetrapisispora phaffii CBS 4417]
gi|357526997|emb|CCE66253.1| hypothetical protein TPHA_0P00950 [Tetrapisispora phaffii CBS 4417]
Length = 213
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 103/195 (52%), Gaps = 46/195 (23%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+S++ RF+ + F + TIG FL++ + ++D T++ ++WDTAGQERF SL P Y
Sbjct: 18 VGKSSIVVRFVSNDFSENKEPTIGAAFLTQRVNIDDHTIKFEIWDTAGQERFASLAPMYY 77
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R++ A++VYD+T SF + W+ ++ + D++I
Sbjct: 78 RNAQAALIVYDVTKPQSFIKARHWVKELHEQASGDIVI---------------------- 115
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDL-----SDKRQVSTEEGERKAKELNVMFIETSA 221
L GNK DL ++R+V+TEEG++ A E N++F ETSA
Sbjct: 116 -------------------ALAGNKVDLIEENGENERKVATEEGQKLADEENLLFFETSA 156
Query: 222 KAGYNVKQVRLQLWD 236
K GYNV ++ L + D
Sbjct: 157 KTGYNVNEIFLAVGD 171
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 91/151 (60%), Gaps = 7/151 (4%)
Query: 198 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVA 257
R VS + E K + F+ + + + ++ ++WDTAGQERF SL P Y R++ A
Sbjct: 26 RFVSNDFSENKEPTIGAAFL--TQRVNIDDHTIKFEIWDTAGQERFASLAPMYYRNAQAA 83
Query: 258 VVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL-----SDKRQVSTEEGERK 312
++VYD+T SF + W+ ++ + D++I L GNK DL ++R+V+TEEG++
Sbjct: 84 LIVYDVTKPQSFIKARHWVKELHEQASGDIVIALAGNKVDLIEENGENERKVATEEGQKL 143
Query: 313 AKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
A E N++F ETSAK GYNV ++F V +P
Sbjct: 144 ADEENLLFFETSAKTGYNVNEIFLAVGDKIP 174
>gi|399217553|emb|CCF74440.1| unnamed protein product [Babesia microti strain RI]
Length = 226
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 109/222 (49%), Gaps = 64/222 (28%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
++KLV LGE T VGK+ L TRF D F + +TIG
Sbjct: 47 QYKLVLLGE-----------------------TAVGKSCLTTRFCKDVFLDYQDSTIGAA 83
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
F++KT+ LE V+ ++WDTAGQER+RSL P Y R ++ A++VYDIT+A++F Q WI+
Sbjct: 84 FMTKTINLESSVVKFEIWDTAGQERYRSLAPMYYRGASAALIVYDITSADTFEQARSWIN 143
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
+++ +DVII L GNK
Sbjct: 144 ELKAVSRADVII-----------------------------------------ALAGNKV 162
Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
DL R V E + AK N +F+ETSAK G+NV+++ +++
Sbjct: 163 DLERNRSVDIETAQNFAKLNNCLFMETSAKTGHNVQEMFMKI 204
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+RSL P Y R ++ A++VYDIT+A++F Q WI++++ +DVII
Sbjct: 96 VKFEIWDTAGQERYRSLAPMYYRGASAALIVYDITSADTFEQARSWINELKAVSRADVII 155
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL R V E + AK N +F+ETSAK G+NV+++F ++A LP
Sbjct: 156 ALAGNKVDLERNRSVDIETAQNFAKLNNCLFMETSAKTGHNVQEMFMKIANLLP 209
>gi|294879180|ref|XP_002768586.1| RAS small GTpases RIC1/ypt1, putative [Perkinsus marinus ATCC
50983]
gi|239871257|gb|EER01304.1| RAS small GTpases RIC1/ypt1, putative [Perkinsus marinus ATCC
50983]
Length = 238
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 109/202 (53%), Gaps = 50/202 (24%)
Query: 36 DSFDNTYQATI---------VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVR 86
D+ D++Y AT VGK+SL+ RF + FD+ + TIG+DF KT+ +++R +R
Sbjct: 20 DASDDSYDATARILVLGDSAVGKSSLLMRFCENRFDSNFVITIGVDFRVKTLDIQERKIR 79
Query: 87 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIML 146
LQ+WDTAGQERFR++ P+Y R++ +++YD+T+ SF W+ ++
Sbjct: 80 LQIWDTAGQERFRTITPAYYRNAMGVLLIYDMTDLKSFKNVDYWVRNLD----------- 128
Query: 147 VGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGE 206
HA+ Q +LVGNK D++ KR+VSTEEG+
Sbjct: 129 -------------QHADKTVQK-----------------LLVGNKADMAAKRKVSTEEGQ 158
Query: 207 RKAKELNVMFIETSAKAGYNVK 228
A + + F ETSAK+G NV+
Sbjct: 159 ALADKYGMTFFETSAKSGLNVE 180
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 77/112 (68%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+++RLQ+WDTAGQERFR++ P+Y R++ +++YD+T+ SF W+ ++ V
Sbjct: 76 RKIRLQIWDTAGQERFRTITPAYYRNAMGVLLIYDMTDLKSFKNVDYWVRNLDQHADKTV 135
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
+LVGNK D++ KR+VSTEEG+ A + + F ETSAK+G NV+ FR +A
Sbjct: 136 QKLLVGNKADMAAKRKVSTEEGQALADKYGMTFFETSAKSGLNVEAAFRAIA 187
>gi|119180268|ref|XP_001241623.1| ras-related protein [Coccidioides immitis RS]
gi|303321211|ref|XP_003070600.1| Ras-related protein ypt5, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240110296|gb|EER28455.1| Ras-related protein ypt5, putative [Coccidioides posadasii C735
delta SOWgp]
gi|320035923|gb|EFW17863.1| GTP-binding protein ypt5 [Coccidioides posadasii str. Silveira]
gi|392866497|gb|EJB11129.1| GTP-binding protein ypt5 [Coccidioides immitis RS]
Length = 217
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 122/248 (49%), Gaps = 68/248 (27%)
Query: 5 GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT 64
G G +FKLV LGE +VGK+SL+ RF+ D FD+
Sbjct: 9 GRPGARFAQFKLVLLGESAVGKSSLVL-----------------------RFVKDQFDDY 45
Query: 65 YQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
++TIG FL++T+ L E+ TV+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S
Sbjct: 46 RESTIGAAFLTQTISLDENTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASS 105
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
+ W+ +++ + ++II L G+ +D V
Sbjct: 106 LDKAKSWVKELQRQANENIIIALAGNK---------------------LDLV-------- 136
Query: 184 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV------RLQLWDT 237
TD DKR V T + E A+E ++F ETSAK NV+++ +L L D
Sbjct: 137 --------TDSPDKRAVQTADAEAYAREAGLLFFETSAKTSTNVRELFTAIAKKLPL-DQ 187
Query: 238 AGQERFRS 245
AG RS
Sbjct: 188 AGPRNLRS 195
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 77/118 (65%), Gaps = 4/118 (3%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S + W+ +++ + ++II
Sbjct: 67 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKSWVKELQRQANENIII 126
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL DKR V T + E A+E ++F ETSAK NV++LF +A LP
Sbjct: 127 ALAGNKLDLVTDSPDKRAVQTADAEAYAREAGLLFFETSAKTSTNVRELFTAIAKKLP 184
>gi|443897405|dbj|GAC74746.1| GTPase Rab5/YPT51 [Pseudozyma antarctica T-34]
Length = 221
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 116/225 (51%), Gaps = 67/225 (29%)
Query: 9 NP-LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
NP + +FKLV LGE +VGK+SL+ RF+ D FD+ ++
Sbjct: 6 NPRMLQFKLVLLGESAVGKSSLVL-----------------------RFVKDQFDDYRES 42
Query: 68 TIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 126
TIG FL++T+ L+ +T V+ ++WDTAGQER++SL P Y R++ AVVVYDIT +S +
Sbjct: 43 TIGAAFLTQTVSLDAQTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQPSSLDK 102
Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
WI +++ + ++II
Sbjct: 103 AKAWIRELQRQADPNIII-----------------------------------------A 121
Query: 187 LVGNKTDL-SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
L GNK DL S +R V+TEE E+ A+E N++F+ETSAK NV ++
Sbjct: 122 LAGNKADLASTRRAVATEEAEKYAQEENLLFLETSAKDSSNVSEL 166
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 83/125 (66%), Gaps = 4/125 (3%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT +S + WI +++ + ++II
Sbjct: 61 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQPSSLDKAKAWIRELQRQADPNIII 120
Query: 290 MLVGNKTDL-SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP---GM 345
L GNK DL S +R V+TEE E+ A+E N++F+ETSAK NV +LF +A LP
Sbjct: 121 ALAGNKADLASTRRAVATEEAEKYAQEENLLFLETSAKDSSNVSELFTMIARKLPLEQAA 180
Query: 346 DSTEN 350
DS N
Sbjct: 181 DSQRN 185
>gi|332235869|ref|XP_003267127.1| PREDICTED: ras-related protein Rab-8B isoform 2 [Nomascus
leucogenys]
gi|397515494|ref|XP_003827985.1| PREDICTED: ras-related protein Rab-8B isoform 2 [Pan paniscus]
gi|402874513|ref|XP_003901080.1| PREDICTED: ras-related protein Rab-8B isoform 2 [Papio anubis]
Length = 190
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 102/183 (55%), Gaps = 41/183 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+S
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHASS-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ N
Sbjct: 113 ---------------DVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSAN 157
Query: 227 VKQ 229
V++
Sbjct: 158 VEE 160
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 82/127 (64%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ NV++ A A +
Sbjct: 115 ERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEENDSNSAGAGGPVKI 174
Query: 348 TENKPPE 354
TEN+ +
Sbjct: 175 TENRSKK 181
>gi|318065097|ref|NP_001187642.1| ras-related protein Rab-10 [Ictalurus punctatus]
gi|308323579|gb|ADO28925.1| ras-related protein rab-10 [Ictalurus punctatus]
Length = 200
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 105/200 (52%), Gaps = 46/200 (23%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F+ T+ +TIGIDF KT+ L + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELNGKRIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITNA SF SKW+ ++ HAN
Sbjct: 80 RGAMGILLVYDITNAKSFENISKWLRNIE------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV ML+GNK D+ D R VS +GE+ E N+ F ETSAKA N
Sbjct: 113 --------------EDVEKMLLGNKCDMEDVRVVSKAKGEQIVSEHNIRFFETSAKANIN 158
Query: 227 VKQVRLQLWD-----TAGQE 241
+++ L L + T G+E
Sbjct: 159 IEKAFLTLAEDVLHKTPGKE 178
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 80/128 (62%), Gaps = 2/128 (1%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N K+++LQ+WDTAGQERF ++ SY R + ++VYDITNA SF SKW+ ++
Sbjct: 54 NGKRIKLQIWDTAGQERFHTITTSYYRGAMGILLVYDITNAKSFENISKWLRNIEEHANE 113
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
DV ML+GNK D+ D R VS +GE+ E N+ F ETSAKA N+++ F +A + +
Sbjct: 114 DVEKMLLGNKCDMEDVRVVSKAKGEQIVSEHNIRFFETSAKANINIEKAFLTLAEDV--L 171
Query: 346 DSTENKPP 353
T K P
Sbjct: 172 HKTPGKEP 179
>gi|301610616|ref|XP_002934841.1| PREDICTED: ras-related protein Rab-8A [Xenopus (Silurana)
tropicalis]
Length = 207
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 104/188 (55%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+S
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHASS-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D+++KRQVS E+GE+ A E + F+ETSAKA N
Sbjct: 113 ---------------DVEKMILGNKCDVNEKRQVSKEKGEKLALEYGIKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
V+ L
Sbjct: 158 VENAFFTL 165
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 83/129 (64%), Gaps = 2/129 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG-MD 346
M++GNK D+++KRQVS E+GE+ A E + F+ETSAKA NV+ F +A + MD
Sbjct: 115 EKMILGNKCDVNEKRQVSKEKGEKLALEYGIKFMETSAKANINVENAFFTLARDIKAKMD 174
Query: 347 S-TENKPPE 354
E P+
Sbjct: 175 KRMEGNSPQ 183
>gi|194387238|dbj|BAG59983.1| unnamed protein product [Homo sapiens]
Length = 190
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 102/183 (55%), Gaps = 41/183 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFPEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+S
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHASS-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ N
Sbjct: 113 ---------------DVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSAN 157
Query: 227 VKQ 229
V++
Sbjct: 158 VEE 160
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 82/127 (64%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ NV++ A A +
Sbjct: 115 ERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEENDSNSAGAGGPVKI 174
Query: 348 TENKPPE 354
TEN+ +
Sbjct: 175 TENRSKK 181
>gi|410961068|ref|XP_003987107.1| PREDICTED: ras-related protein Rab-8B isoform 2 [Felis catus]
Length = 190
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 102/183 (55%), Gaps = 41/183 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+S
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHASS-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ N
Sbjct: 113 ---------------DVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTN 157
Query: 227 VKQ 229
V++
Sbjct: 158 VEE 160
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 82/127 (64%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ NV++ + A +
Sbjct: 115 ERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEENDSNSSGAGGPVKI 174
Query: 348 TENKPPE 354
TEN+ +
Sbjct: 175 TENRSKK 181
>gi|407044250|gb|EKE42471.1| Rab family GTPase [Entamoeba nuttalli P19]
Length = 195
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 82/114 (71%), Gaps = 1/114 (0%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
++ ++WDTAGQER+ SL P Y R S A+VVYDIT+ +SF Q KWID++R G++ +I
Sbjct: 57 IKFEIWDTAGQERYHSLTPMYYRGSNAALVVYDITSDSSFIQAKKWIDELRGS-GNEAVI 115
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
LVGNK DL+D R ++ EE E A+ L++ +IETSAKA NV +LF ++A LP
Sbjct: 116 FLVGNKCDLADSRVITKEEAEGYARSLSIDYIETSAKANINVNELFDQIARKLP 169
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 106/202 (52%), Gaps = 49/202 (24%)
Query: 40 NTYQATIV-------GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92
NTYQ IV GK+S++ R D + + TIG FL+KT+ ++ T++ ++WDT
Sbjct: 5 NTYQFKIVLLGDSSVGKSSIVLRVCKDEYKEFQENTIGAAFLTKTLIVDGDTIKFEIWDT 64
Query: 93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIET 152
AGQER+ SL P Y R S A+VVYDIT+ +SF Q KWID++R G++ +I L
Sbjct: 65 AGQERYHSLTPMYYRGSNAALVVYDITSDSSFIQAKKWIDELRGS-GNEAVIFL------ 117
Query: 153 NFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL 212
VGNK DL+D R ++ EE E A+ L
Sbjct: 118 -----------------------------------VGNKCDLADSRVITKEEAEGYARSL 142
Query: 213 NVMFIETSAKAGYNVKQVRLQL 234
++ +IETSAKA NV ++ Q+
Sbjct: 143 SIDYIETSAKANINVNELFDQI 164
>gi|330936207|ref|XP_003305289.1| hypothetical protein PTT_18094 [Pyrenophora teres f. teres 0-1]
gi|311317754|gb|EFQ86627.1| hypothetical protein PTT_18094 [Pyrenophora teres f. teres 0-1]
Length = 220
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 113/228 (49%), Gaps = 69/228 (30%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G+ +FKLV LGE + VGK+SL+ RF+ D FD+ ++
Sbjct: 13 GSRFAQFKLVLLGE-----------------------SAVGKSSLVLRFVKDQFDDYRES 49
Query: 68 TIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 126
TIG FL++T+ L E+ TV+ ++WDTAGQER++SL P Y R++ AVVVYDIT A S +
Sbjct: 50 TIGAAFLTQTIALDENTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQAASLDK 109
Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
W+ +++ + ++II
Sbjct: 110 AKAWVKELQRQANENIII-----------------------------------------A 128
Query: 187 LVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
L GNK DL DKR +ST + E+ A+E ++F ETSAK NVK++
Sbjct: 129 LAGNKLDLVTESPDKRAISTADAEQYAREAGLLFFETSAKTCENVKEL 176
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 78/118 (66%), Gaps = 4/118 (3%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A S + W+ +++ + ++II
Sbjct: 68 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQAASLDKAKAWVKELQRQANENIII 127
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL DKR +ST + E+ A+E ++F ETSAK NVK+LF +A LP
Sbjct: 128 ALAGNKLDLVTESPDKRAISTADAEQYAREAGLLFFETSAKTCENVKELFTAIAKKLP 185
>gi|74219413|dbj|BAE29485.1| unnamed protein product [Mus musculus]
Length = 215
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 110/225 (48%), Gaps = 64/225 (28%)
Query: 6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTY 65
D GN + +FKLV LGE + VGK+SL+ RF+ F
Sbjct: 13 DTGNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEFQ 49
Query: 66 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 125
++TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF
Sbjct: 50 ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFA 109
Query: 126 QTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVII 185
+ W+ +++ + +++I L G
Sbjct: 110 RAKNWVKELQRQASPNIVIALSG------------------------------------- 132
Query: 186 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 133 ----NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI 173
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 182
>gi|410912320|ref|XP_003969638.1| PREDICTED: ras-related protein Rab-8B-like [Takifugu rubripes]
gi|410930031|ref|XP_003978402.1| PREDICTED: ras-related protein Rab-8B-like [Takifugu rubripes]
Length = 205
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 104/188 (55%), Gaps = 42/188 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF W+ ++ SDV
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIRNWMRNIEEHASSDV------------------------ 114
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
ER ML+GNK D+ DKRQV+ E GE+ A + ++ F+ETSAKAG N
Sbjct: 115 -----------ER------MLLGNKCDM-DKRQVAKERGEKLAIDYSIKFLETSAKAGLN 156
Query: 227 VKQVRLQL 234
V++ L L
Sbjct: 157 VEEAFLTL 164
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 84/128 (65%), Gaps = 4/128 (3%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF W+ ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWMRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
ML+GNK D+ DKRQV+ E GE+ A + ++ F+ETSAKAG NV++ F +A + G S
Sbjct: 115 ERMLLGNKCDM-DKRQVAKERGEKLAIDYSIKFLETSAKAGLNVEEAFLTLARDIMGRLS 173
Query: 348 ---TENKP 352
EN P
Sbjct: 174 RKMNENNP 181
>gi|451852641|gb|EMD65936.1| hypothetical protein COCSADRAFT_198789 [Cochliobolus sativus
ND90Pr]
gi|451997104|gb|EMD89569.1| hypothetical protein COCHEDRAFT_1021897 [Cochliobolus
heterostrophus C5]
Length = 221
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 113/228 (49%), Gaps = 69/228 (30%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G+ +FKLV LGE + VGK+SL+ RF+ D FD+ ++
Sbjct: 14 GSRFAQFKLVLLGE-----------------------SAVGKSSLVLRFVKDQFDDYRES 50
Query: 68 TIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 126
TIG FL++T+ L E+ TV+ ++WDTAGQER++SL P Y R++ AVVVYDIT A S +
Sbjct: 51 TIGAAFLTQTIALDENTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQAASLDK 110
Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
W+ +++ + ++II
Sbjct: 111 AKAWVKELQRQANENIII-----------------------------------------A 129
Query: 187 LVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
L GNK DL DKR +ST + E+ A+E ++F ETSAK NVK++
Sbjct: 130 LAGNKLDLVTESPDKRAISTADAEQYAREAGLLFFETSAKTSENVKEL 177
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 78/118 (66%), Gaps = 4/118 (3%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A S + W+ +++ + ++II
Sbjct: 69 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQAASLDKAKAWVKELQRQANENIII 128
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL DKR +ST + E+ A+E ++F ETSAK NVK+LF +A LP
Sbjct: 129 ALAGNKLDLVTESPDKRAISTADAEQYAREAGLLFFETSAKTSENVKELFTAIAKKLP 186
>gi|50752811|ref|XP_413757.1| PREDICTED: ras-related protein Rab-8B [Gallus gallus]
Length = 201
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 104/188 (55%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+S
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHASS-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D+++KRQVS E+GE+ A + + F+ETSAK+ N
Sbjct: 113 ---------------DVERMILGNKCDMNEKRQVSKEKGEKLAIDYGIKFLETSAKSSIN 157
Query: 227 VKQVRLQL 234
V++ L
Sbjct: 158 VEEAFFTL 165
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 78/112 (69%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D+++KRQVS E+GE+ A + + F+ETSAK+ NV++ F +A
Sbjct: 115 ERMILGNKCDMNEKRQVSKEKGEKLAIDYGIKFLETSAKSSINVEEAFFTLA 166
>gi|345322815|ref|XP_003430635.1| PREDICTED: LOW QUALITY PROTEIN: ras-related protein Rab-10-like
[Ornithorhynchus anatinus]
Length = 200
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 101/188 (53%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F+ T+ +TIGIDF KT+ L+ + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF SKW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNGKSFENISKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV ML+GNK D+ DKR V +GE+ AKE + F ETSAKA N
Sbjct: 113 --------------EDVERMLLGNKCDMEDKRVVLKTKGEQIAKEHGIRFFETSAKANIN 158
Query: 227 VKQVRLQL 234
+++ L L
Sbjct: 159 IEKAFLTL 166
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 74/112 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITN SF SKW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
ML+GNK D+ DKR V +GE+ AKE + F ETSAKA N+++ F +A
Sbjct: 116 ERMLLGNKCDMEDKRVVLKTKGEQIAKEHGIRFFETSAKANINIEKAFLTLA 167
>gi|403298224|ref|XP_003939930.1| PREDICTED: ras-related protein Rab-8B isoform 2 [Saimiri
boliviensis boliviensis]
Length = 190
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 102/183 (55%), Gaps = 41/183 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+S
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHASS-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ N
Sbjct: 113 ---------------DVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTN 157
Query: 227 VKQ 229
V++
Sbjct: 158 VEE 160
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 82/127 (64%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ NV++ A A +
Sbjct: 115 ERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEENDSNSAGAGGPVKI 174
Query: 348 TENKPPE 354
TEN+ +
Sbjct: 175 TENRSKK 181
>gi|145535658|ref|XP_001453562.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74834359|emb|CAI44524.1| rab_B51 [Paramecium tetraurelia]
gi|124421284|emb|CAK86165.1| unnamed protein product [Paramecium tetraurelia]
Length = 223
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 90/138 (65%), Gaps = 23/138 (16%)
Query: 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
+K KLVFLG +SF VGKTS+I RF+ ++FD Q T+GI
Sbjct: 7 QKQKLVFLG---------------NSF--------VGKTSIIERFVQNTFDPKSQPTVGI 43
Query: 72 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
DF+SK M ++ +T+RL LWDTAGQERF SLIP Y+RD+ AV+V+D+T+ +SF +W
Sbjct: 44 DFISKNMTIDGKTMRLLLWDTAGQERFHSLIPGYVRDAQCAVIVFDVTSRHSFESLDRWF 103
Query: 132 DDVRTERGSDVIIMLVGS 149
+V+ RG++ +I+++G+
Sbjct: 104 KEVKQTRGNEALIVILGN 121
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 78/116 (67%), Gaps = 2/116 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K +RL LWDTAGQERF SLIP Y+RD+ AV+V+D+T+ +SF +W +V+ RG++
Sbjct: 55 KTMRLLLWDTAGQERFHSLIPGYVRDAQCAVIVFDVTSRHSFESLDRWFKEVKQTRGNEA 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
+I+++GNK D +R VS +E A + ++++ E SAK G +++ ++ ALP
Sbjct: 115 LIVILGNKIDA--ERVVSADEAREYAIKKDILYYEVSAKTGKGIEEAMEQICLALP 168
>gi|261205984|ref|XP_002627729.1| GTP-binding protein ypt5 [Ajellomyces dermatitidis SLH14081]
gi|239592788|gb|EEQ75369.1| GTP-binding protein ypt5 [Ajellomyces dermatitidis SLH14081]
gi|327350703|gb|EGE79560.1| Ypt5 protein [Ajellomyces dermatitidis ATCC 18188]
Length = 217
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 123/248 (49%), Gaps = 68/248 (27%)
Query: 5 GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT 64
G G +FKLV LGE +VGK+SL+ RF+ D FD+
Sbjct: 9 GRPGARFAQFKLVLLGESAVGKSSLVL-----------------------RFVKDQFDDY 45
Query: 65 YQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
++TIG FL++T+ L E+ TV+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S
Sbjct: 46 RESTIGAAFLTQTISLDENTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASS 105
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
+ W+ +++ + +++I L G+ +D V
Sbjct: 106 LDKAKSWVKELQRQANENIVIALAGNK---------------------LDLV-------- 136
Query: 184 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV------RLQLWDT 237
TD DKR + T + E A+E ++F ETSAK+ NV+++ +L L D
Sbjct: 137 --------TDSPDKRAIQTADAEAYAREAGLLFFETSAKSSTNVRELFTAIAKKLPL-DQ 187
Query: 238 AGQERFRS 245
AG RS
Sbjct: 188 AGPRNLRS 195
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 78/118 (66%), Gaps = 4/118 (3%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S + W+ +++ + +++I
Sbjct: 67 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKSWVKELQRQANENIVI 126
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL DKR + T + E A+E ++F ETSAK+ NV++LF +A LP
Sbjct: 127 ALAGNKLDLVTDSPDKRAIQTADAEAYAREAGLLFFETSAKSSTNVRELFTAIAKKLP 184
>gi|406864129|gb|EKD17175.1| Rab5-like protein ypt5 [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 220
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 122/252 (48%), Gaps = 76/252 (30%)
Query: 5 GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT 64
G N +FKLV LGE +VGK+SL+ RF+ D FD+
Sbjct: 11 GGNNNRFAQFKLVLLGESAVGKSSLVL-----------------------RFVKDQFDDF 47
Query: 65 YQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
++TIG FL++T+ L+D T V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S
Sbjct: 48 RESTIGAAFLTQTISLDDNTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASS 107
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
+ +W+ +++ + ++II
Sbjct: 108 LDKAKQWVKELQRQANENIII--------------------------------------- 128
Query: 184 IIMLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV------RLQ 233
L GNK DL DKR ++T + E AKE ++F ETSAK NV+++ +L
Sbjct: 129 --ALAGNKLDLVTAQPDKRAITTADAEAYAKEAGLLFFETSAKTSENVRELFTSIAKKLP 186
Query: 234 LWDTAGQERFRS 245
L D AG RS
Sbjct: 187 L-DQAGPRNPRS 197
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 83/128 (64%), Gaps = 5/128 (3%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S + +W+ +++ + ++II
Sbjct: 69 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKQWVKELQRQANENIII 128
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
L GNK DL DKR ++T + E AKE ++F ETSAK NV++LF +A LP +
Sbjct: 129 ALAGNKLDLVTAQPDKRAITTADAEAYAKEAGLLFFETSAKTSENVRELFTSIAKKLP-L 187
Query: 346 DSTENKPP 353
D + P
Sbjct: 188 DQAGPRNP 195
>gi|195999668|ref|XP_002109702.1| hypothetical protein TRIADDRAFT_20540 [Trichoplax adhaerens]
gi|190587826|gb|EDV27868.1| hypothetical protein TRIADDRAFT_20540, partial [Trichoplax
adhaerens]
Length = 190
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 80/115 (69%)
Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI 288
V+LQ+WDTAGQERFRS+ +Y RD+ +++YD+TN SF WI+D+ G+DV+
Sbjct: 47 NVKLQIWDTAGQERFRSVTHAYFRDAHALLLLYDVTNKKSFENVLSWIEDINAHAGNDVV 106
Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
+ML+GNK DL+ ++ + TE+GE+ AK+ N+ F+ETSAK G N+ F +A L
Sbjct: 107 VMLLGNKADLTTEKVIKTEQGEKLAKDNNIAFMETSAKTGMNIDLAFHAIAKNLK 161
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 100/182 (54%), Gaps = 42/182 (23%)
Query: 47 VGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY 105
VGKT ++ R+ +F ++ +T+G+DF +K + ++ V+LQ+WDTAGQERFRS+ +Y
Sbjct: 9 VGKTCVLVRYKNGAFLSGSFISTVGLDFRNKIVDVDGTNVKLQIWDTAGQERFRSVTHAY 68
Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
RD+ +++YD+TN SF WI+D+ G+DV++M
Sbjct: 69 FRDAHALLLLYDVTNKKSFENVLSWIEDINAHAGNDVVVM-------------------- 108
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 225
L+GNK DL+ ++ + TE+GE+ AK+ N+ F+ETSAK G
Sbjct: 109 ---------------------LLGNKADLTTEKVIKTEQGEKLAKDNNIAFMETSAKTGM 147
Query: 226 NV 227
N+
Sbjct: 148 NI 149
>gi|449281648|gb|EMC88684.1| Ras-related protein Rab-5A [Columba livia]
Length = 215
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 15 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEFQES 51
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 52 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 111
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 112 KNWVKELQRQASPNIVIALAG--------------------------------------- 132
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 133 --NKADLANKRAVDFQEAQAYADDNSLLFMETSAKTSMNVNEI 173
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 129 ALAGNKADLANKRAVDFQEAQAYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 182
>gi|444726573|gb|ELW67098.1| Ras-related protein Rab-8A [Tupaia chinensis]
Length = 229
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 104/186 (55%), Gaps = 41/186 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA++
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIE------------------------EHASA-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAKA N
Sbjct: 113 ---------------DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157
Query: 227 VKQVRL 232
V+ + L
Sbjct: 158 VENLAL 163
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 74/107 (69%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 334
M++GNK D++DKRQVS E GE+ A + + F+ETSAKA NV+ L
Sbjct: 115 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENL 161
>gi|195020252|ref|XP_001985156.1| GH16908 [Drosophila grimshawi]
gi|193898638|gb|EDV97504.1| GH16908 [Drosophila grimshawi]
Length = 207
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 101/188 (53%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F+ T+ +TIGIDF +T+ L+++ ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCILFRFSEDAFNTTFISTIGIDFKIRTIELDNKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDIT SF WI ++ +DV ML
Sbjct: 79 RGAMGIMLVYDITQEKSFENIKNWIRNIEENAAADVEKML-------------------- 118
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+GNK +L+DKRQVS E GE+ A E + F+ETSAKA N
Sbjct: 119 ---------------------LGNKCELNDKRQVSKERGEQLAVEYGIKFMETSAKASIN 157
Query: 227 VKQVRLQL 234
V++ L L
Sbjct: 158 VEEAFLTL 165
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 82/130 (63%), Gaps = 3/130 (2%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDIT SF WI ++ +DV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITQEKSFENIKNWIRNIEENAAADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
ML+GNK +L+DKRQVS E GE+ A E + F+ETSAKA NV++ F +A+ +
Sbjct: 115 EKMLLGNKCELNDKRQVSKERGEQLAVEYGIKFMETSAKASINVEEAFLTLASDIKAKTE 174
Query: 348 TE---NKPPE 354
N PP+
Sbjct: 175 KRMEANNPPK 184
>gi|378725883|gb|EHY52342.1| GTP-binding protein ypt5 [Exophiala dermatitidis NIH/UT8656]
Length = 219
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 123/261 (47%), Gaps = 81/261 (31%)
Query: 1 MSSSGDFGNP-----LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITR 55
M++ G P +FKLV LGE +VGK+SL+ R
Sbjct: 1 MATRAPAGRPGAGGRFAQFKLVLLGESAVGKSSLVL-----------------------R 37
Query: 56 FMYDSFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 114
F+ D FD+ ++TIG FL++T+ L E+ TV+ ++WDTAGQER++SL P Y R++ AVV
Sbjct: 38 FVKDQFDDYRESTIGAAFLTQTISLDENTTVKFEIWDTAGQERYKSLAPMYYRNANCAVV 97
Query: 115 VYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDD 174
VYDIT A+S + W+ +++ + +++I
Sbjct: 98 VYDITQASSLDKAKSWVKELQRQANENIVI------------------------------ 127
Query: 175 VRTERGSDVIIMLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
L GNK DL DKR + T + E AKE ++F ETSAK NV+++
Sbjct: 128 -----------ALAGNKLDLVNEHPDKRAIQTADAEAYAKEAGLLFFETSAKTATNVREL 176
Query: 231 ------RLQLWDTAGQERFRS 245
+L L D AG RS
Sbjct: 177 FTAIAKKLPL-DQAGPRNLRS 196
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 77/118 (65%), Gaps = 4/118 (3%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S + W+ +++ + +++I
Sbjct: 68 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKSWVKELQRQANENIVI 127
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL DKR + T + E AKE ++F ETSAK NV++LF +A LP
Sbjct: 128 ALAGNKLDLVNEHPDKRAIQTADAEAYAKEAGLLFFETSAKTATNVRELFTAIAKKLP 185
>gi|224045361|ref|XP_002196933.1| PREDICTED: ras-related protein Rab-5A [Taeniopygia guttata]
Length = 215
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 15 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 51
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 52 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 111
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 112 KNWVKELQRQASPNIVIALAG--------------------------------------- 132
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 133 --NKADLANKRAVDFQEAQAYADDNSLLFMETSAKTSMNVNEI 173
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 129 ALAGNKADLANKRAVDFQEAQAYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 182
>gi|302903042|ref|XP_003048772.1| hypothetical protein NECHADRAFT_62851 [Nectria haematococca mpVI
77-13-4]
gi|256729706|gb|EEU43059.1| hypothetical protein NECHADRAFT_62851 [Nectria haematococca mpVI
77-13-4]
Length = 236
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 117/230 (50%), Gaps = 45/230 (19%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
M+ S + P KLV LGE +VGK+SL+ RF+ +
Sbjct: 1 MADSANAPKPSSSVKLVLLGEAAVGKSSLVL-----------------------RFVNND 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
F + TIG FL++ L RT++ ++WDTAGQERF SL P Y R++ A+VVYD+T
Sbjct: 38 FQENKEPTIGAAFLTQKCNLPTRTIKFEIWDTAGQERFASLAPMYYRNAQAALVVYDLTK 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
S + W+ +++ + ++I LVG+ + + T S A+S + G
Sbjct: 98 PTSLIKAKHWVAELQRQASPGIVIALVGN-KLDLTGDSGAAADS-------------QNG 143
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
D + D R+VSTEE + A+E +++F ETSAK+G+NV +V
Sbjct: 144 DD--------GEESGDARKVSTEEAQSYAEEESLLFFETSAKSGHNVTEV 185
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 89/157 (56%), Gaps = 21/157 (13%)
Query: 206 ERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 265
E K + F+ + K + ++ ++WDTAGQERF SL P Y R++ A+VVYD+T
Sbjct: 40 ENKEPTIGAAFL--TQKCNLPTRTIKFEIWDTAGQERFASLAPMYYRNAQAALVVYDLTK 97
Query: 266 ANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS-------------------DKRQVST 306
S + W+ +++ + ++I LVGNK DL+ D R+VST
Sbjct: 98 PTSLIKAKHWVAELQRQASPGIVIALVGNKLDLTGDSGAAADSQNGDDGEESGDARKVST 157
Query: 307 EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
EE + A+E +++F ETSAK+G+NV ++F +A A+P
Sbjct: 158 EEAQSYAEEESLLFFETSAKSGHNVTEVFTAIANAIP 194
>gi|41393159|ref|NP_958909.1| ras-related protein Rab-5C [Danio rerio]
gi|28277724|gb|AAH45466.1| RAB5C, member RAS oncogene family [Danio rerio]
gi|41351014|gb|AAH65634.1| RAB5C, member RAS oncogene family [Danio rerio]
gi|182891710|gb|AAI65047.1| Rab5c protein [Danio rerio]
Length = 221
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 112/229 (48%), Gaps = 64/229 (27%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
+ + GN + +FKLV LGE +VGK+SL+ RF+ F
Sbjct: 11 NGAAPVGNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQF 47
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
++TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN
Sbjct: 48 HEYQESTIGAAFLTQTLCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNT 107
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
++F + W+ +++ + +++I L G
Sbjct: 108 DTFTRAKNWVKELQRQASPNIVIALAG--------------------------------- 134
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 135 --------NKADLANKRAVDFQEAQAYADDNSLLFMETSAKTAMNVNEI 175
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 77/114 (67%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 71 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFTRAKNWVKELQRQASPNIVI 130
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 131 ALAGNKADLANKRAVDFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLP 184
>gi|354469298|ref|XP_003497066.1| PREDICTED: ras-related protein Rab-10-like [Cricetulus griseus]
Length = 200
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 101/188 (53%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F+ T+ +TIGIDF KT+ L+ + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF SKW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNGKSFENISKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV ML+GNK D+ DKR V +GE+ A+E + F ETSAKA N
Sbjct: 113 --------------EDVERMLLGNKCDMDDKRVVPKSKGEQIAREHGIRFFETSAKANIN 158
Query: 227 VKQVRLQL 234
+++ L L
Sbjct: 159 IEKAFLTL 166
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 74/112 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITN SF SKW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
ML+GNK D+ DKR V +GE+ A+E + F ETSAKA N+++ F +A
Sbjct: 116 ERMLLGNKCDMDDKRVVPKSKGEQIAREHGIRFFETSAKANINIEKAFLTLA 167
>gi|354721184|ref|NP_001238968.1| ras-related protein Rab-5C isoform b [Homo sapiens]
gi|397485578|ref|XP_003813920.1| PREDICTED: ras-related protein Rab-5C isoform 3 [Pan paniscus]
Length = 249
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 49 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEYQES 85
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 86 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA 145
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 146 KNWVKELQRQASPNIVIALAG--------------------------------------- 166
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL+ KR V +E + A + +++F+ETSAK NV ++
Sbjct: 167 --NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEI 207
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 82/138 (59%), Gaps = 15/138 (10%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 103 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 162
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP------ 343
L GNK DL+ KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 163 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQN 222
Query: 344 ---------GMDSTENKP 352
G+D EN P
Sbjct: 223 ATGAPGRNRGVDLQENNP 240
>gi|57530730|ref|NP_001006363.1| ras-related protein Rab-5A [Gallus gallus]
gi|53135109|emb|CAG32396.1| hypothetical protein RCJMB04_24h4 [Gallus gallus]
Length = 215
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 15 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEFQES 51
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 52 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 111
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 112 KNWVKELQRQASPNIVIALAG--------------------------------------- 132
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 133 --NKADLANKRAVDFQEAQAYADDNSLLFMETSAKTSMNVNEI 173
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 129 ALAGNKADLANKRAVDFQEAQAYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 182
>gi|50979062|ref|NP_001003261.1| ras-related protein Rab-5C [Canis lupus familiaris]
gi|1710027|sp|P51147.1|RAB5C_CANFA RecName: Full=Ras-related protein Rab-5C
gi|415377|emb|CAA81626.1| Rab5c protein [Canis lupus familiaris]
Length = 216
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEYQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALAG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL+ KR V +E + A + +++F+ETSAK NV ++
Sbjct: 134 --NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEI 174
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 82/138 (59%), Gaps = 15/138 (10%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP------ 343
L GNK DL+ KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQN 189
Query: 344 ---------GMDSTENKP 352
G+D EN P
Sbjct: 190 AAGAPSRNRGVDLQENSP 207
>gi|426348255|ref|XP_004041753.1| PREDICTED: ras-related protein Rab-5C isoform 2 [Gorilla gorilla
gorilla]
Length = 249
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 49 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEYQES 85
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 86 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA 145
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 146 KNWVKELQRQASPNIVIALAG--------------------------------------- 166
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL+ KR V +E + A + +++F+ETSAK NV ++
Sbjct: 167 --NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEI 207
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 82/138 (59%), Gaps = 15/138 (10%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 103 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 162
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP------ 343
L GNK DL+ KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 163 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQN 222
Query: 344 ---------GMDSTENKP 352
G+D EN P
Sbjct: 223 ATGAPGRNRGVDLQENNP 240
>gi|195128585|ref|XP_002008743.1| GI13664 [Drosophila mojavensis]
gi|195379444|ref|XP_002048489.1| GJ13999 [Drosophila virilis]
gi|193920352|gb|EDW19219.1| GI13664 [Drosophila mojavensis]
gi|194155647|gb|EDW70831.1| GJ13999 [Drosophila virilis]
Length = 207
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 101/188 (53%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F+ T+ +TIGIDF +T+ L+++ ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCILFRFSEDAFNTTFISTIGIDFKIRTIELDNKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDIT SF WI ++ +DV ML
Sbjct: 79 RGAMGIMLVYDITQEKSFENIKNWIRNIEENAAADVEKML-------------------- 118
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+GNK +L+DKRQVS E GE+ A E + F+ETSAKA N
Sbjct: 119 ---------------------LGNKCELNDKRQVSKERGEQLAIEYGIKFMETSAKASIN 157
Query: 227 VKQVRLQL 234
V++ L L
Sbjct: 158 VEEAFLTL 165
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 82/130 (63%), Gaps = 3/130 (2%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDIT SF WI ++ +DV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITQEKSFENIKNWIRNIEENAAADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
ML+GNK +L+DKRQVS E GE+ A E + F+ETSAKA NV++ F +A+ +
Sbjct: 115 EKMLLGNKCELNDKRQVSKERGEQLAIEYGIKFMETSAKASINVEEAFLTLASDIKAKTE 174
Query: 348 TE---NKPPE 354
N PP+
Sbjct: 175 KRMEANNPPK 184
>gi|344229410|gb|EGV61296.1| ras-domain-containing protein [Candida tenuis ATCC 10573]
gi|344229411|gb|EGV61297.1| hypothetical protein CANTEDRAFT_116954 [Candida tenuis ATCC 10573]
Length = 213
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 109/224 (48%), Gaps = 57/224 (25%)
Query: 7 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQ 66
F NP + KLV LGE +VGK+SL+ RF+ + F +
Sbjct: 3 FPNPAKAVKLVLLGEAAVGKSSLVL-----------------------RFVSNDFQENKE 39
Query: 67 ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 126
TIG FL++ + D+T++ ++WDTAGQERF SL P Y R++ A+VVYDIT SF +
Sbjct: 40 PTIGAAFLTQKCTIGDKTIKYEIWDTAGQERFASLAPMYYRNAQAALVVYDITKPASFLK 99
Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
W+ ++ + D+ I LVG N + D V E D +
Sbjct: 100 ARHWVKELHEQASKDITIALVG--------------NKY-------DLVEDENDGDTL-- 136
Query: 187 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
R+VS EEG++ A++ ++F ETSAK YNV +V
Sbjct: 137 -----------RKVSVEEGQKLAEDEGLLFFETSAKTSYNVNEV 169
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 88/153 (57%), Gaps = 9/153 (5%)
Query: 198 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVA 257
R VS + E K + F+ + K K ++ ++WDTAGQERF SL P Y R++ A
Sbjct: 28 RFVSNDFQENKEPTIGAAFL--TQKCTIGDKTIKYEIWDTAGQERFASLAPMYYRNAQAA 85
Query: 258 VVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK-------RQVSTEEGE 310
+VVYDIT SF + W+ ++ + D+ I LVGNK DL + R+VS EEG+
Sbjct: 86 LVVYDITKPASFLKARHWVKELHEQASKDITIALVGNKYDLVEDENDGDTLRKVSVEEGQ 145
Query: 311 RKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
+ A++ ++F ETSAK YNV ++F + +P
Sbjct: 146 KLAEDEGLLFFETSAKTSYNVNEVFVGIGTKIP 178
>gi|332260869|ref|XP_003279503.1| PREDICTED: ras-related protein Rab-5C isoform 3 [Nomascus
leucogenys]
Length = 249
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 49 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEYQES 85
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 86 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA 145
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 146 KNWVKELQRQASPNIVIALAG--------------------------------------- 166
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL+ KR V +E + A + +++F+ETSAK NV ++
Sbjct: 167 --NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEI 207
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 82/138 (59%), Gaps = 15/138 (10%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 103 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 162
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP------ 343
L GNK DL+ KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 163 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQN 222
Query: 344 ---------GMDSTENKP 352
G+D EN P
Sbjct: 223 ATGAPGRNRGVDLQENNP 240
>gi|20072723|gb|AAH27378.1| Rab5c protein, partial [Mus musculus]
Length = 203
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 3 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEYQES 39
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 40 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA 99
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 100 KNWVKELQRQASPNIVIALAG--------------------------------------- 120
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL+ KR V +E + A + +++F+ETSAK NV ++
Sbjct: 121 --NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEI 161
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 80/123 (65%), Gaps = 5/123 (4%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 57 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 116
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
L GNK DL+ KR V +E + A + +++F+ETSAK NV ++F +A LP +
Sbjct: 117 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLP-----K 171
Query: 350 NKP 352
N+P
Sbjct: 172 NEP 174
>gi|125858678|gb|AAI29779.1| LOC100037230 protein [Xenopus laevis]
Length = 205
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 104/188 (55%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 17 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 76
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+S
Sbjct: 77 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHASS-- 110
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D+++KRQVS E+GE+ A E + F+ETSAKA N
Sbjct: 111 ---------------DVEKMVLGNKCDVNEKRQVSKEKGEKLALEYGIKFMETSAKANIN 155
Query: 227 VKQVRLQL 234
V+ L
Sbjct: 156 VENAFFTL 163
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 83/129 (64%), Gaps = 2/129 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 53 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG-MD 346
M++GNK D+++KRQVS E+GE+ A E + F+ETSAKA NV+ F +A + MD
Sbjct: 113 EKMVLGNKCDVNEKRQVSKEKGEKLALEYGIKFMETSAKANINVENAFFTLARDIKAKMD 172
Query: 347 S-TENKPPE 354
E P+
Sbjct: 173 KRMEGNSPQ 181
>gi|17737663|ref|NP_524172.1| Rab8, isoform A [Drosophila melanogaster]
gi|386771441|ref|NP_001246837.1| Rab8, isoform C [Drosophila melanogaster]
gi|194751943|ref|XP_001958283.1| GF10843 [Drosophila ananassae]
gi|194874419|ref|XP_001973397.1| GG13365 [Drosophila erecta]
gi|195354284|ref|XP_002043628.1| GM15893 [Drosophila sechellia]
gi|195496110|ref|XP_002095554.1| GE22459 [Drosophila yakuba]
gi|195591647|ref|XP_002085550.1| GD12244 [Drosophila simulans]
gi|2313045|dbj|BAA21711.1| rab8 [Drosophila melanogaster]
gi|7293732|gb|AAF49101.1| Rab8, isoform A [Drosophila melanogaster]
gi|17862678|gb|AAL39816.1| LD44762p [Drosophila melanogaster]
gi|40788410|dbj|BAD07038.1| Rab8 [Drosophila melanogaster]
gi|190625565|gb|EDV41089.1| GF10843 [Drosophila ananassae]
gi|190655180|gb|EDV52423.1| GG13365 [Drosophila erecta]
gi|194127796|gb|EDW49839.1| GM15893 [Drosophila sechellia]
gi|194181655|gb|EDW95266.1| GE22459 [Drosophila yakuba]
gi|194197559|gb|EDX11135.1| GD12244 [Drosophila simulans]
gi|220946338|gb|ACL85712.1| Rab8-PA [synthetic construct]
gi|220956084|gb|ACL90585.1| Rab8-PA [synthetic construct]
gi|383292017|gb|AFH04508.1| Rab8, isoform C [Drosophila melanogaster]
Length = 207
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 101/188 (53%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F+ T+ +TIGIDF +T+ L+++ ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCILFRFSEDAFNTTFISTIGIDFKIRTIELDNKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDIT SF WI ++ +DV ML
Sbjct: 79 RGAMGIMLVYDITQEKSFENIKNWIRNIEENASADVEKML-------------------- 118
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+GNK +L+DKRQVS E GE+ A E + F+ETSAKA N
Sbjct: 119 ---------------------LGNKCELTDKRQVSKERGEQLAIEYGIKFMETSAKASIN 157
Query: 227 VKQVRLQL 234
V++ L L
Sbjct: 158 VEEAFLTL 165
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 82/130 (63%), Gaps = 3/130 (2%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDIT SF WI ++ +DV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITQEKSFENIKNWIRNIEENASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
ML+GNK +L+DKRQVS E GE+ A E + F+ETSAKA NV++ F +A+ +
Sbjct: 115 EKMLLGNKCELTDKRQVSKERGEQLAIEYGIKFMETSAKASINVEEAFLTLASDIKAKTE 174
Query: 348 TE---NKPPE 354
N PP+
Sbjct: 175 KRMEANNPPK 184
>gi|74215300|dbj|BAE41866.1| unnamed protein product [Mus musculus]
Length = 216
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEYQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALAG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL+ KR V +E + A + +++F+ETSAK NV ++
Sbjct: 134 --NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEI 174
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL+ KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLP 183
>gi|242006074|ref|XP_002423881.1| GTP-binding nuclear protein RAN1, putative [Pediculus humanus
corporis]
gi|212507127|gb|EEB11143.1| GTP-binding nuclear protein RAN1, putative [Pediculus humanus
corporis]
Length = 215
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 111/231 (48%), Gaps = 64/231 (27%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
+G F + +FKLV LGE + VGK+SL+ RF+ F
Sbjct: 12 TGAFQGKVHQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHE 48
Query: 64 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
++TIG FL++T+ +D TV+ ++WDTAGQER+ SL P Y R + A+VVYDI N ++
Sbjct: 49 FQESTIGAAFLTQTICDDDLTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDIQNMDT 108
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
F + W+ +++ +++I
Sbjct: 109 FGKAKSWVKELQRHASPNIVI--------------------------------------- 129
Query: 184 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
L GNK DLSDKR V T+E + A++ ++F+ETSAK NV ++ L +
Sbjct: 130 --ALAGNKADLSDKRMVETDEAQAYAQDHGLLFMETSAKTAMNVNEIFLAI 178
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDI N ++F + W+ +++ +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDIQNMDTFGKAKSWVKELQRHASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DLSDKR V T+E + A++ ++F+ETSAK NV ++F +A LP
Sbjct: 130 ALAGNKADLSDKRMVETDEAQAYAQDHGLLFMETSAKTAMNVNEIFLAIAKKLP 183
>gi|326921972|ref|XP_003207227.1| PREDICTED: ras-related protein Rab-5A-like [Meleagris gallopavo]
Length = 215
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 15 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 51
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 52 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 111
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 112 KNWVKELQRQASPNIVIALAG--------------------------------------- 132
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 133 --NKADLANKRAVDFQEAQAYADDNSLLFMETSAKTSMNVNEI 173
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 129 ALAGNKADLANKRAVDFQEAQAYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 182
>gi|301773541|ref|XP_002922175.1| PREDICTED: ras-related protein Rab-5C-like [Ailuropoda melanoleuca]
gi|281344533|gb|EFB20117.1| hypothetical protein PANDA_011151 [Ailuropoda melanoleuca]
Length = 216
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEYQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALAG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL+ KR V +E + A + +++F+ETSAK NV ++
Sbjct: 134 --NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEI 174
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 82/138 (59%), Gaps = 15/138 (10%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP------ 343
L GNK DL+ KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQN 189
Query: 344 ---------GMDSTENKP 352
G+D EN P
Sbjct: 190 AAGAPSRNRGVDLQENNP 207
>gi|410908022|ref|XP_003967490.1| PREDICTED: ras-related protein Rab-8B-like [Takifugu rubripes]
Length = 207
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 102/184 (55%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF DSF+ T+ +TIGIDF +T+ L+ + V+LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDSFNTTFISTIGIDFKIRTIELDGKRVKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYD +N SF WI ++ HA+S
Sbjct: 79 RGAMGIMLVYDTSNEKSFENIKNWIRNIE------------------------EHASS-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++D+RQVS + GE+ A + V F+ETSAK+G N
Sbjct: 113 ---------------DVEKMILGNKCDMTDRRQVSKDRGEKLAIDYGVKFMETSAKSGLN 157
Query: 227 VKQV 230
V++
Sbjct: 158 VEEA 161
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 77/112 (68%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+V+LQ+WDTAGQERFR++ +Y R + ++VYD +N SF WI ++ SDV
Sbjct: 55 KRVKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDTSNEKSFENIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++D+RQVS + GE+ A + V F+ETSAK+G NV++ F +A
Sbjct: 115 EKMILGNKCDMTDRRQVSKDRGEKLAIDYGVKFMETSAKSGLNVEEAFYTMA 166
>gi|113866024|ref|NP_077776.2| ras-related protein Rab-5C [Mus musculus]
gi|38258917|sp|P35278.2|RAB5C_MOUSE RecName: Full=Ras-related protein Rab-5C
gi|18606182|gb|AAH23027.1| RAB5C, member RAS oncogene family [Mus musculus]
gi|20988213|gb|AAH29678.1| RAB5C, member RAS oncogene family [Mus musculus]
gi|74186351|dbj|BAE42948.1| unnamed protein product [Mus musculus]
gi|74195703|dbj|BAE39656.1| unnamed protein product [Mus musculus]
gi|74204684|dbj|BAE35411.1| unnamed protein product [Mus musculus]
gi|112292959|dbj|BAF02857.1| Rab5C [Mus musculus]
gi|148670588|gb|EDL02535.1| RAB5C, member RAS oncogene family, isoform CRA_a [Mus musculus]
Length = 216
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEYQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALAG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL+ KR V +E + A + +++F+ETSAK NV ++
Sbjct: 134 --NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEI 174
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL+ KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLP 183
>gi|85076611|ref|XP_955952.1| Rab5-like protein ypt51 [Neurospora crassa OR74A]
gi|28916987|gb|EAA26716.1| Rab5-like protein ypt51 [Neurospora crassa OR74A]
Length = 236
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 106/221 (47%), Gaps = 43/221 (19%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
P KLV LGE +VGK+SL+ RF+ + F + TI
Sbjct: 9 PSSSVKLVLLGEAAVGKSSLVL-----------------------RFVNNDFQENKEPTI 45
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
G FL++ L RT++ ++WDTAGQERF SL P Y R++ A+VVYD+T S +
Sbjct: 46 GAAFLTQKCNLPTRTIKFEIWDTAGQERFASLAPMYYRNAQAALVVYDLTKPTSLIKAKH 105
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
W+ +++ + ++I LVG N TS G D
Sbjct: 106 WVAELQRQASPGIVIALVG--------------NKLDLTSDSAGSAEASGGGD------D 145
Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
N D D R++ST+E + A+E ++F ETSAK G+NV +V
Sbjct: 146 NAEDSGDARKISTDEAKAYAEEEGLLFFETSAKTGHNVTEV 186
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 87/159 (54%), Gaps = 23/159 (14%)
Query: 206 ERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 265
E K + F+ + K + ++ ++WDTAGQERF SL P Y R++ A+VVYD+T
Sbjct: 39 ENKEPTIGAAFL--TQKCNLPTRTIKFEIWDTAGQERFASLAPMYYRNAQAALVVYDLTK 96
Query: 266 ANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS---------------------DKRQV 304
S + W+ +++ + ++I LVGNK DL+ D R++
Sbjct: 97 PTSLIKAKHWVAELQRQASPGIVIALVGNKLDLTSDSAGSAEASGGGDDNAEDSGDARKI 156
Query: 305 STEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
ST+E + A+E ++F ETSAK G+NV ++F +A A+P
Sbjct: 157 STDEAKAYAEEEGLLFFETSAKTGHNVTEVFTAIANAIP 195
>gi|426348257|ref|XP_004041754.1| PREDICTED: ras-related protein Rab-5C isoform 3 [Gorilla gorilla
gorilla]
Length = 286
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 86 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEYQES 122
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 123 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA 182
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 183 KNWVKELQRQASPNIVIALAG--------------------------------------- 203
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL+ KR V +E + A + +++F+ETSAK NV ++
Sbjct: 204 --NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEI 244
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 82/138 (59%), Gaps = 15/138 (10%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 140 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 199
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP------ 343
L GNK DL+ KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 200 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQN 259
Query: 344 ---------GMDSTENKP 352
G+D EN P
Sbjct: 260 ATGAPGRNRGVDLQENNP 277
>gi|443707017|gb|ELU02811.1| hypothetical protein CAPTEDRAFT_227582 [Capitella teleta]
Length = 210
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 116/238 (48%), Gaps = 70/238 (29%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+FKLV LGE + VGK+SL+ RF+ F ++TIG
Sbjct: 19 QFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEYQESTIGAA 55
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+
Sbjct: 56 FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQDTFGRAKTWVR 115
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
+++ + +++I L GNK
Sbjct: 116 ELQRQASPNIVI-----------------------------------------ALAGNKA 134
Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLW------DTAGQERFR 244
DL++KR V EE + A+E +++F+ETSAK NV + L + + AGQ++ R
Sbjct: 135 DLANKRMVEYEEAQAYAEENSLLFMETSAKTAMNVNDIFLAIAKKLPKNEQAGQQQSR 192
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 85/137 (62%), Gaps = 14/137 (10%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 68 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQDTFGRAKTWVRELQRQASPNIVI 127
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP------ 343
L GNK DL++KR V EE + A+E +++F+ETSAK NV +F +A LP
Sbjct: 128 ALAGNKADLANKRMVEYEEAQAYAEENSLLFMETSAKTAMNVNDIFLAIAKKLPKNEQAG 187
Query: 344 -------GMD-STENKP 352
G+D S EN+P
Sbjct: 188 QQQSRQRGVDLSQENQP 204
>gi|427779031|gb|JAA54967.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 297
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 105/215 (48%), Gaps = 63/215 (29%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
FK++ +G+ VGKT L+ R+ SF Y +T+G+DF
Sbjct: 101 FKVMLVGDSGVGKTCLLIRYKDGSF----------------------LSGAYISTVGMDF 138
Query: 74 LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
+K + ++D V+LQ+WDTAGQERFRS+ +Y RD+ +++YD++N SF T W+ +
Sbjct: 139 RNKVVTVDDYKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVSNKTSFDNTRAWLGE 198
Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
+ DV+IML +GNK D
Sbjct: 199 INEYAQDDVVIML-----------------------------------------IGNKAD 217
Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
++ RQV TE+GER A+E V F+ETSAK G NV+
Sbjct: 218 ITQDRQVRTEDGERLAREYGVAFMETSAKTGCNVE 252
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 79/114 (69%)
Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI 288
+V+LQ+WDTAGQERFRS+ +Y RD+ +++YD++N SF T W+ ++ DV+
Sbjct: 149 KVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVSNKTSFDNTRAWLGEINEYAQDDVV 208
Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
IML+GNK D++ RQV TE+GER A+E V F+ETSAK G NV+ F VA L
Sbjct: 209 IMLIGNKADITQDRQVRTEDGERLAREYGVAFMETSAKTGCNVELAFMAVAREL 262
>gi|395540249|ref|XP_003772070.1| PREDICTED: ras-related protein Rab-5A [Sarcophilus harrisii]
Length = 215
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 15 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 51
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 52 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 111
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 112 KNWVKELQRQASPNIVIALAG--------------------------------------- 132
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 133 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI 173
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 129 ALAGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 182
>gi|291237556|ref|XP_002738699.1| PREDICTED: RAB5B, member RAS oncogene family-like [Saccoglossus
kowalevskii]
Length = 215
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 116/240 (48%), Gaps = 70/240 (29%)
Query: 1 MSSSGDFGNP------LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLIT 54
MSS G+ P + +FKLV LGE +VGK+SL+
Sbjct: 1 MSSRGNVQRPNGTQGKICQFKLVLLGESAVGKSSLVL----------------------- 37
Query: 55 RFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 114
RF+ F ++TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+V
Sbjct: 38 RFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 97
Query: 115 VYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDD 174
VYD+TN ++F + W+ +++ + +++I
Sbjct: 98 VYDVTNQDTFARAKTWVKELQRQASPNIVI------------------------------ 127
Query: 175 VRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
L GNK DL++KR V EE + A++ +++F+ETSAK NV + L +
Sbjct: 128 -----------ALAGNKADLANKRMVEYEEAQAYAEDNSLLFMETSAKTAMNVNDIFLAI 176
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 77/114 (67%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYD+TN ++F + W+ +++ + +++I
Sbjct: 68 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDVTNQDTFARAKTWVKELQRQASPNIVI 127
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V EE + A++ +++F+ETSAK NV +F +A LP
Sbjct: 128 ALAGNKADLANKRMVEYEEAQAYAEDNSLLFMETSAKTAMNVNDIFLAIAKKLP 181
>gi|347800697|ref|NP_001099310.2| ras-related protein Rab-5C [Rattus norvegicus]
gi|149054244|gb|EDM06061.1| rCG32615, isoform CRA_a [Rattus norvegicus]
gi|165970759|gb|AAI58857.1| Rab5c protein [Rattus norvegicus]
Length = 216
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEYQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALAG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL+ KR V +E + A + +++F+ETSAK NV ++
Sbjct: 134 --NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEI 174
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL+ KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLP 183
>gi|291406117|ref|XP_002719438.1| PREDICTED: RAB5C, member RAS oncogene family [Oryctolagus
cuniculus]
Length = 216
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEYQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALAG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL+ KR V +E + A + +++F+ETSAK NV ++
Sbjct: 134 --NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEI 174
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 82/138 (59%), Gaps = 15/138 (10%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP------ 343
L GNK DL+ KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQS 189
Query: 344 ---------GMDSTENKP 352
G+D EN P
Sbjct: 190 AAGAPGRNRGVDLQENNP 207
>gi|444714079|gb|ELW54967.1| Ras-related protein Rab-5C [Tupaia chinensis]
Length = 216
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEYQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALAG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL+ KR V +E + A + +++F+ETSAK NV ++
Sbjct: 134 --NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEI 174
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 80/123 (65%), Gaps = 1/123 (0%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
L GNK DL+ KR V +E + A + +++F+ETSAK NV ++F +A LP + +
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLP-KNEPQ 188
Query: 350 NKP 352
N P
Sbjct: 189 NAP 191
>gi|403304464|ref|XP_003942816.1| PREDICTED: ras-related protein Rab-5C isoform 1 [Saimiri
boliviensis boliviensis]
gi|403304466|ref|XP_003942817.1| PREDICTED: ras-related protein Rab-5C isoform 2 [Saimiri
boliviensis boliviensis]
gi|403304468|ref|XP_003942818.1| PREDICTED: ras-related protein Rab-5C isoform 3 [Saimiri
boliviensis boliviensis]
Length = 216
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEYQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALAG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL+ KR V +E + A + +++F+ETSAK NV ++
Sbjct: 134 --NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEI 174
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL+ KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLP 183
>gi|149634147|ref|XP_001508982.1| PREDICTED: ras-related protein Rab-5A-like [Ornithorhynchus
anatinus]
Length = 215
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 15 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 51
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 52 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 111
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 112 KNWVKELQRQASPNIVIALAG--------------------------------------- 132
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 133 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI 173
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 129 ALAGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 182
>gi|395532394|ref|XP_003768255.1| PREDICTED: uncharacterized protein LOC100922389 [Sarcophilus
harrisii]
Length = 495
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 295 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEYQES 331
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 332 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA 391
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 392 KNWVKELQRQASPNIVIALAG--------------------------------------- 412
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL+ KR V +E + A + +++F+ETSAK NV ++
Sbjct: 413 --NKADLASKRAVDFQEAQAYADDNSLLFMETSAKTAMNVNEI 453
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 80/123 (65%), Gaps = 1/123 (0%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 349 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 408
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
L GNK DL+ KR V +E + A + +++F+ETSAK NV ++F +A LP + +
Sbjct: 409 ALAGNKADLASKRAVDFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLP-KNEPQ 467
Query: 350 NKP 352
N P
Sbjct: 468 NAP 470
>gi|417397109|gb|JAA45588.1| Putative rab subfamily protein of small gtpase [Desmodus rotundus]
Length = 207
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+S
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHASS-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++D+RQVS E GE+ A + + F+ETSAK+ N
Sbjct: 113 ---------------DVERMILGNKCDMNDRRQVSKERGEKLAIDYGIKFLETSAKSSTN 157
Query: 227 VKQVRLQL 234
V++ L
Sbjct: 158 VEEAFFTL 165
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 77/112 (68%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++D+RQVS E GE+ A + + F+ETSAK+ NV++ F +A
Sbjct: 115 ERMILGNKCDMNDRRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLA 166
>gi|149723790|ref|XP_001495006.1| PREDICTED: ras-related protein Rab-5C-like [Equus caballus]
Length = 216
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEYQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALAG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL+ KR V +E + A + +++F+ETSAK NV ++
Sbjct: 134 --NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEI 174
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 82/138 (59%), Gaps = 15/138 (10%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP------ 343
L GNK DL+ KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQN 189
Query: 344 ---------GMDSTENKP 352
G+D EN P
Sbjct: 190 AAGAPGRNRGVDLQENNP 207
>gi|71896479|ref|NP_001025499.1| RAB5C, member RAS oncogene family [Xenopus (Silurana) tropicalis]
gi|89270950|emb|CAJ81259.1| RAB5C, member RAS oncogene family [Xenopus (Silurana) tropicalis]
Length = 216
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 108/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEYQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN +F +
Sbjct: 53 TIGAAFLTQTLCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTETFARA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALSG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DLS KR V +E + A + +++F+ETSAK NV ++
Sbjct: 134 --NKADLSSKRAVDFQEAQAYADDNSLLFMETSAKTAMNVNEI 174
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 82/139 (58%), Gaps = 15/139 (10%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN +F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTETFARAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP------ 343
L GNK DLS KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALSGNKADLSSKRAVDFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQN 189
Query: 344 ---------GMDSTENKPP 353
G+D EN PP
Sbjct: 190 AQGNTGRNRGVDLQENNPP 208
>gi|410921404|ref|XP_003974173.1| PREDICTED: ras-related protein Rab-8A-like [Takifugu rubripes]
Length = 206
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 105/188 (55%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHAS--- 111
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+DV M++GNK D++DKRQVS + GE+ A + + F+ETSAKA N
Sbjct: 112 --------------ADVERMILGNKCDVNDKRQVSKDRGEKLALDYGIKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
V++ L L
Sbjct: 158 VEEAFLTL 165
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 77/112 (68%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS + GE+ A + + F+ETSAKA NV++ F +A
Sbjct: 115 ERMILGNKCDVNDKRQVSKDRGEKLALDYGIKFMETSAKANINVEEAFLTLA 166
>gi|221057099|ref|XP_002259687.1| GTPase [Plasmodium knowlesi strain H]
gi|193809759|emb|CAQ40461.1| GTPase, putative [Plasmodium knowlesi strain H]
Length = 200
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 107/201 (53%), Gaps = 46/201 (22%)
Query: 34 MYDSFDNTYQATI-----VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ 88
M DS+D+ ++ + VGK+ L+ RF D++ ++Y +TIG+DF KT+ +ED+ ++LQ
Sbjct: 1 MNDSYDSLFKILLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIKTIEIEDKIIKLQ 60
Query: 89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVG 148
+WDTAGQERFR++ SY R + ++VYD+T+ +SF+ WI ++ DV +L
Sbjct: 61 IWDTAGQERFRTITSSYYRGAQGIIIVYDVTDRDSFNNVKNWIIEIEKYASEDVQKIL-- 118
Query: 149 SIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERK 208
+GNK DL + R VS EEG+
Sbjct: 119 ---------------------------------------IGNKIDLKNDRNVSYEEGKEL 139
Query: 209 AKELNVMFIETSAKAGYNVKQ 229
A N+ F+ETSAK +NV+Q
Sbjct: 140 ADSCNIQFLETSAKIAHNVEQ 160
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 79/126 (62%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQERFR++ SY R + ++VYD+T+ +SF+ WI ++ DV
Sbjct: 55 KIIKLQIWDTAGQERFRTITSSYYRGAQGIIIVYDVTDRDSFNNVKNWIIEIEKYASEDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+L+GNK DL + R VS EEG+ A N+ F+ETSAK +NV+Q F+ +A +
Sbjct: 115 QKILIGNKIDLKNDRNVSYEEGKELADSCNIQFLETSAKIAHNVEQAFKTMAHEIKNKSQ 174
Query: 348 TENKPP 353
EN+
Sbjct: 175 LENQQK 180
>gi|131847|sp|P22127.1|RAB10_DISOM RecName: Full=Ras-related protein Rab-10; Short=ORA1
gi|213115|gb|AAA49230.1| GTP-binding protein [Discopyge ommata]
Length = 200
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 101/188 (53%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F+ T+ +TIGIDF KT+ L + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITNA SF SKW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNAKSFENISKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV ML+GNK D+ DKR V +GE+ A+E + F ETSAKA N
Sbjct: 113 --------------EDVERMLLGNKCDMEDKRVVLKSKGEQIAREHAIRFFETSAKANIN 158
Query: 227 VKQVRLQL 234
+++ L L
Sbjct: 159 IEKAFLTL 166
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 81/127 (63%), Gaps = 2/127 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITNA SF SKW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
ML+GNK D+ DKR V +GE+ A+E + F ETSAKA N+++ F +A + +
Sbjct: 116 ERMLLGNKCDMEDKRVVLKSKGEQIAREHAIRFFETSAKANINIEKAFLTLAEDI--LQK 173
Query: 348 TENKPPE 354
T K P+
Sbjct: 174 TPVKEPD 180
>gi|27066021|pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 64/227 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE ++VGK+SL+ RF+ F ++
Sbjct: 1 GNKICQFKLVLLGE-----------------------SLVGKSSLVLRFVKGQFHEFQES 37
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 38 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 97
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 98 KNWVKELQRQASPNIVIALSG--------------------------------------- 118
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NK DL++KR V +E + A + +++F+ETSAK NV ++ + +
Sbjct: 119 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 114
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168
>gi|357463331|ref|XP_003601947.1| Ras-related protein RABH1B [Medicago truncatula]
gi|355490995|gb|AES72198.1| Ras-related protein RABH1B [Medicago truncatula]
Length = 119
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 73/87 (83%)
Query: 265 NANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETS 324
N SF T+KW+++VR ERGSDVII+LVGNKTDL +KRQVS EEG+ K++E +MFIETS
Sbjct: 6 NRQSFLNTNKWVEEVRAERGSDVIIVLVGNKTDLVEKRQVSIEEGDAKSRESGIMFIETS 65
Query: 325 AKAGYNVKQLFRRVAAALPGMDSTENK 351
AKAG+N+K LFR++A+ALPGM+S K
Sbjct: 66 AKAGFNIKPLFRKIASALPGMESLSTK 92
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 57/65 (87%)
Query: 164 SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA 223
SF T+KW+++VR ERGSDVII+LVGNKTDL +KRQVS EEG+ K++E +MFIETSAKA
Sbjct: 9 SFLNTNKWVEEVRAERGSDVIIVLVGNKTDLVEKRQVSIEEGDAKSRESGIMFIETSAKA 68
Query: 224 GYNVK 228
G+N+K
Sbjct: 69 GFNIK 73
>gi|344285066|ref|XP_003414284.1| PREDICTED: ras-related protein Rab-5C-like [Loxodonta africana]
Length = 216
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEYQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALAG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL+ KR V +E + A + +++F+ETSAK NV ++
Sbjct: 134 --NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEI 174
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 82/138 (59%), Gaps = 15/138 (10%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP------ 343
L GNK DL+ KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQN 189
Query: 344 ---------GMDSTENKP 352
G+D EN P
Sbjct: 190 AAGAPGRNRGVDLQENNP 207
>gi|195427545|ref|XP_002061837.1| GK17214 [Drosophila willistoni]
gi|194157922|gb|EDW72823.1| GK17214 [Drosophila willistoni]
Length = 207
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 101/188 (53%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F+ T+ +TIGIDF +T+ L+++ ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCILFRFSEDAFNTTFISTIGIDFKIRTIELDNKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDIT SF WI ++ +DV ML
Sbjct: 79 RGAMGIMLVYDITQEKSFENIKNWIRNIEENASADVEKML-------------------- 118
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+GNK +L+DKRQVS E GE+ A E + F+ETSAKA N
Sbjct: 119 ---------------------LGNKCELNDKRQVSKERGEQLAIEYGIKFMETSAKASIN 157
Query: 227 VKQVRLQL 234
V++ L L
Sbjct: 158 VEEAFLTL 165
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 82/130 (63%), Gaps = 3/130 (2%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDIT SF WI ++ +DV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITQEKSFENIKNWIRNIEENASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
ML+GNK +L+DKRQVS E GE+ A E + F+ETSAKA NV++ F +A+ +
Sbjct: 115 EKMLLGNKCELNDKRQVSKERGEQLAIEYGIKFMETSAKASINVEEAFLTLASDIKAKTE 174
Query: 348 TE---NKPPE 354
N PP+
Sbjct: 175 KRMEANNPPK 184
>gi|354485034|ref|XP_003504689.1| PREDICTED: ras-related protein Rab-5C-like [Cricetulus griseus]
gi|344251933|gb|EGW08037.1| Ras-related protein Rab-5C [Cricetulus griseus]
Length = 216
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEYQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALAG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL+ KR V +E + A + +++F+ETSAK NV ++
Sbjct: 134 --NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEI 174
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL+ KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLP 183
>gi|414874079|tpg|DAA52636.1| TPA: ras protein RHN1 [Zea mays]
Length = 248
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 107/229 (46%), Gaps = 64/229 (27%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
S + +FGN +R KLV LG+ VG GK+SL+ RF+ F
Sbjct: 45 SMAANFGNKIRNAKLVLLGD--VG---------------------AGKSSLVLRFVKGQF 81
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
++TIG F S+T+ + D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN
Sbjct: 82 VEFQESTIGAAFFSQTLAVNDETVKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITNP 141
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF + KW+ +++ + + I+
Sbjct: 142 ASFTRAKKWVQELQAQGNPNTIV------------------------------------- 164
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
L GNK D+ D R V+ EE + A+E + F+ETSAK NV +
Sbjct: 165 ----ALAGNKVDMLDARHVAVEEAKTYAQENGLFFMETSAKTAINVNDI 209
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 74/117 (63%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N + V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + KW+ +++ +
Sbjct: 101 NDETVKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITNPASFTRAKKWVQELQAQGNP 160
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+ I+ L GNK D+ D R V+ EE + A+E + F+ETSAK NV +F +A L
Sbjct: 161 NTIVALAGNKVDMLDARHVAVEEAKTYAQENGLFFMETSAKTAINVNDIFYEIAKRL 217
>gi|254566325|ref|XP_002490273.1| GTPase, similar to Ypt51p and Ypt53p and to mammalian rab5
[Komagataella pastoris GS115]
gi|238030069|emb|CAY67992.1| GTPase, similar to Ypt51p and Ypt53p and to mammalian rab5
[Komagataella pastoris GS115]
gi|328350666|emb|CCA37066.1| Ras-related protein ORAB-1 [Komagataella pastoris CBS 7435]
Length = 206
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 112/219 (51%), Gaps = 65/219 (29%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+FKLV LGE +VGK+S++ R F+ DSFD+ ++TIG
Sbjct: 13 QFKLVLLGESAVGKSSIVHR-----------------------FVTDSFDDLRESTIGAA 49
Query: 73 FLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
FL++T+ L++RT ++ ++WDTAGQER++SL P Y R++ A+V YDIT +S + WI
Sbjct: 50 FLTQTIQLDERTTIKFEIWDTAGQERYKSLAPMYYRNANCALVAYDITQESSLDRAKSWI 109
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
+++ + +D+++ L VGNK
Sbjct: 110 QELQKQASADIVVAL-----------------------------------------VGNK 128
Query: 192 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
DL +R+VST+E + A EL ++F E SAK G +K V
Sbjct: 129 LDLEAERKVSTKEAKEYADELGLIFKEISAKTGEGIKDV 167
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 78/114 (68%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
++ ++WDTAGQER++SL P Y R++ A+V YDIT +S + WI +++ + +D+++
Sbjct: 63 IKFEIWDTAGQERYKSLAPMYYRNANCALVAYDITQESSLDRAKSWIQELQKQASADIVV 122
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
LVGNK DL +R+VST+E + A EL ++F E SAK G +K +F +A+ LP
Sbjct: 123 ALVGNKLDLEAERKVSTKEAKEYADELGLIFKEISAKTGEGIKDVFHSIASKLP 176
>gi|357460067|ref|XP_003600315.1| Ras-related protein Rab-2-A, partial [Medicago truncatula]
gi|355489363|gb|AES70566.1| Ras-related protein Rab-2-A, partial [Medicago truncatula]
Length = 171
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 83/117 (70%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N V+LQ+WDTAGQERFRS+ SY R + A++VYDIT +F + W++D R S
Sbjct: 51 NNNSVKLQIWDTAGQERFRSITRSYYRKAAGALLVYDITRRETFDHMATWLEDARQHASS 110
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
D+IIMLVGNK+DL+ R VSTEEGE+ AKE +MF+E SAK+ N+++ F + A ++
Sbjct: 111 DMIIMLVGNKSDLAGNRLVSTEEGEKFAKENGLMFMEVSAKSRENIEEAFVKTAESI 167
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 101/186 (54%), Gaps = 41/186 (22%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ L+ +F + F + TIG++F +T+ + + +V+LQ+WDTAGQERFRS+ S
Sbjct: 15 TGVGKSCLLLQFTDNRFQRFHDVTIGVEFGIRTININNNSVKLQIWDTAGQERFRSITRS 74
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R + A++VYDIT +F + W++D R SD+IIML
Sbjct: 75 YYRKAAGALLVYDITRRETFDHMATWLEDARQHASSDMIIML------------------ 116
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
VGNK+DL+ R VSTEEGE+ AKE +MF+E SAK+
Sbjct: 117 -----------------------VGNKSDLAGNRLVSTEEGEKFAKENGLMFMEVSAKSR 153
Query: 225 YNVKQV 230
N+++
Sbjct: 154 ENIEEA 159
>gi|291001341|ref|XP_002683237.1| rab family small GTPase [Naegleria gruberi]
gi|284096866|gb|EFC50493.1| rab family small GTPase [Naegleria gruberi]
Length = 213
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 113/230 (49%), Gaps = 67/230 (29%)
Query: 4 SGDFGNPLRK---FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
S D NP K FKLV LGE SVGK+SL+ RF+
Sbjct: 2 SSDSVNPNAKSVPFKLVLLGESSVGKSSLVL-----------------------RFVRGQ 38
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
F ++TIG FL++T+ L D V+ ++WDTAGQER++SL P Y R + A+VVYDIT+
Sbjct: 39 FFEYQESTIGAAFLTQTVPLGDTIVKFEIWDTAGQERYKSLAPMYYRGAAAAIVVYDITS 98
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
A+SF + W+ +++ + ++++I
Sbjct: 99 ADSFQRAKNWVKELQRQGTTNIVI------------------------------------ 122
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
L GNK DL DKRQV + E + A++ ++F+ETSAKA NV ++
Sbjct: 123 -----ALAGNKVDLEDKRQVESAEAKSYAEDNGLLFMETSAKAATNVNEL 167
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 84/121 (69%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R + A+VVYDIT+A+SF + W+ +++ + ++++I
Sbjct: 63 VKFEIWDTAGQERYKSLAPMYYRGAAAAIVVYDITSADSFQRAKNWVKELQRQGTTNIVI 122
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
L GNK DL DKRQV + E + A++ ++F+ETSAKA NV +LF +A LP ++
Sbjct: 123 ALAGNKVDLEDKRQVESAEAKSYAEDNGLLFMETSAKAATNVNELFVAIARKLPSKETDN 182
Query: 350 N 350
N
Sbjct: 183 N 183
>gi|357514605|ref|XP_003627591.1| Ras-related protein Rab-2-A, partial [Medicago truncatula]
gi|355521613|gb|AET02067.1| Ras-related protein Rab-2-A, partial [Medicago truncatula]
Length = 189
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 83/117 (70%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N V+LQ+WDTAGQERFRS+ SY R + A++VYDIT +F + W++D R S
Sbjct: 51 NNNSVKLQIWDTAGQERFRSITRSYYRKAAGALLVYDITRRETFDHMATWLEDARQHASS 110
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
D+IIMLVGNK+DL+ R VSTEEGE+ AKE +MF+E SAK+ N+++ F + A ++
Sbjct: 111 DMIIMLVGNKSDLAGNRLVSTEEGEKFAKENGLMFMEVSAKSRENIEEAFVKTAESI 167
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 101/185 (54%), Gaps = 41/185 (22%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ L+ +F + F + TIG++F +T+ + + +V+LQ+WDTAGQERFRS+ S
Sbjct: 15 TGVGKSCLLLQFTDNRFQRFHDVTIGVEFGIRTININNNSVKLQIWDTAGQERFRSITRS 74
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R + A++VYDIT +F + W++D R SD+IIML
Sbjct: 75 YYRKAAGALLVYDITRRETFDHMATWLEDARQHASSDMIIML------------------ 116
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
VGNK+DL+ R VSTEEGE+ AKE +MF+E SAK+
Sbjct: 117 -----------------------VGNKSDLAGNRLVSTEEGEKFAKENGLMFMEVSAKSR 153
Query: 225 YNVKQ 229
N+++
Sbjct: 154 ENIEE 158
>gi|393909277|gb|EFO27359.2| Ras-like protein Rab-5A [Loa loa]
Length = 217
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 113/233 (48%), Gaps = 66/233 (28%)
Query: 4 SGDFGNPLR--KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
SG+ G P + +FKLV LGE +VGK+SL+ RF+ F
Sbjct: 9 SGNTGGPNKTCQFKLVLLGESAVGKSSLVL-----------------------RFVKGQF 45
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
++TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN
Sbjct: 46 HEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQ 105
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF + W+ +++ + +++I
Sbjct: 106 ESFTKAKNWVKELQRQASPNIVI------------------------------------- 128
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
L GNK DL++KR V EE + A++ ++F+ETSAK NV + L +
Sbjct: 129 ----ALSGNKADLANKRVVEYEEAQAYAEDNALLFMETSAKTAMNVNDIFLAI 177
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 75/114 (65%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQESFTKAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V EE + A++ ++F+ETSAK NV +F +A LP
Sbjct: 129 ALSGNKADLANKRVVEYEEAQAYAEDNALLFMETSAKTAMNVNDIFLAIAKKLP 182
>gi|115496115|ref|NP_001069785.1| ras-related protein Rab-8B [Bos taurus]
gi|116255981|sp|Q2HJI8.1|RAB8B_BOVIN RecName: Full=Ras-related protein Rab-8B; Flags: Precursor
gi|88682949|gb|AAI05331.1| RAB8B, member RAS oncogene family [Bos taurus]
Length = 207
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 102/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+S
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHASS-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+E SAK+ N
Sbjct: 113 ---------------DVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLEASAKSSMN 157
Query: 227 VKQVRLQL 234
V++ L
Sbjct: 158 VEEAFFTL 165
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 76/112 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E GE+ A + + F+E SAK+ NV++ F +A
Sbjct: 115 ERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLEASAKSSMNVEEAFFTLA 166
>gi|126307942|ref|XP_001364024.1| PREDICTED: ras-related protein Rab-5C-like [Monodelphis domestica]
Length = 216
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEYQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L
Sbjct: 113 KNWVKELQRQASPNIVIAL----------------------------------------- 131
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNK DL KR V +E + A++ +++F+ETSAK NV ++
Sbjct: 132 AGNKADLGSKRAVDFQEAQAYAEDNSLLFMETSAKTAMNVNEI 174
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 80/123 (65%), Gaps = 1/123 (0%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
L GNK DL KR V +E + A++ +++F+ETSAK NV ++F +A LP + +
Sbjct: 130 ALAGNKADLGSKRAVDFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLP-KNEPQ 188
Query: 350 NKP 352
N P
Sbjct: 189 NAP 191
>gi|336469296|gb|EGO57458.1| hypothetical protein NEUTE1DRAFT_146066 [Neurospora tetrasperma
FGSC 2508]
gi|350291070|gb|EGZ72284.1| Rab5-like protein ypt51 [Neurospora tetrasperma FGSC 2509]
Length = 236
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 106/221 (47%), Gaps = 43/221 (19%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
P KLV LGE +VGK+SL+ RF+ + F + TI
Sbjct: 9 PSSSVKLVLLGEAAVGKSSLVL-----------------------RFVNNDFQENKEPTI 45
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
G FL++ L RT++ ++WDTAGQERF SL P Y R++ A+VVYD+T S +
Sbjct: 46 GAAFLTQKCNLPTRTIKFEIWDTAGQERFASLAPMYYRNAQAALVVYDLTKPTSLIKAKH 105
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
W+ +++ + ++I LVG N TS G D
Sbjct: 106 WVAELQRQASPGIVIALVG--------------NKLDLTSDSAGSAEVSGGGD------D 145
Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
N D D R++ST+E + A+E ++F ETSAK G+NV +V
Sbjct: 146 NAEDSGDARKISTDEAKAYAEEEGLLFFETSAKTGHNVTEV 186
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 87/159 (54%), Gaps = 23/159 (14%)
Query: 206 ERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 265
E K + F+ + K + ++ ++WDTAGQERF SL P Y R++ A+VVYD+T
Sbjct: 39 ENKEPTIGAAFL--TQKCNLPTRTIKFEIWDTAGQERFASLAPMYYRNAQAALVVYDLTK 96
Query: 266 ANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS---------------------DKRQV 304
S + W+ +++ + ++I LVGNK DL+ D R++
Sbjct: 97 PTSLIKAKHWVAELQRQASPGIVIALVGNKLDLTSDSAGSAEVSGGGDDNAEDSGDARKI 156
Query: 305 STEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
ST+E + A+E ++F ETSAK G+NV ++F +A A+P
Sbjct: 157 STDEAKAYAEEEGLLFFETSAKTGHNVTEVFTAIANAIP 195
>gi|389584207|dbj|GAB66940.1| small GTPase Rab1A [Plasmodium cynomolgi strain B]
Length = 221
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 111/224 (49%), Gaps = 57/224 (25%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMY-------DSFDNTYQ 66
FK++ +G+ VGK+ L+ RF TY LI RF D++ ++Y
Sbjct: 9 FKILLIGDSGVGKSCLLLRFARKRGRQTY---------LINRFETENDQINDDTYTDSYI 59
Query: 67 ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 126
+TIG+DF KT+ +ED+ ++LQ+WDTAGQERFR++ SY R + ++VYD+T+ +SF+
Sbjct: 60 STIGVDFKIKTIEIEDKIIKLQIWDTAGQERFRTITSSYYRGAQGIIIVYDVTDRDSFNN 119
Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
WI ++ DV +L
Sbjct: 120 VKNWIIEIEKYASEDVQKIL---------------------------------------- 139
Query: 187 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
+GNK DL + R VS EEG+ A N+ F+ETSAK +NV+Q
Sbjct: 140 -IGNKIDLKNDRNVSYEEGKELADSCNIQFLETSAKIAHNVEQA 182
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 79/126 (62%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQERFR++ SY R + ++VYD+T+ +SF+ WI ++ DV
Sbjct: 76 KIIKLQIWDTAGQERFRTITSSYYRGAQGIIIVYDVTDRDSFNNVKNWIIEIEKYASEDV 135
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+L+GNK DL + R VS EEG+ A N+ F+ETSAK +NV+Q F+ +A +
Sbjct: 136 QKILIGNKIDLKNDRNVSYEEGKELADSCNIQFLETSAKIAHNVEQAFKTMAHEIKNKSQ 195
Query: 348 TENKPP 353
EN+
Sbjct: 196 LENQQK 201
>gi|328856833|gb|EGG05952.1| hypothetical protein MELLADRAFT_116620 [Melampsora larici-populina
98AG31]
Length = 216
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 112/222 (50%), Gaps = 65/222 (29%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
P +FKLV LGE + VGK+SL+ RF+ + F ++TI
Sbjct: 11 PAYQFKLVLLGE-----------------------SAVGKSSLVLRFVQNDFQEYRESTI 47
Query: 70 GIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
G FL++T+ L+D+T ++ ++WDTAGQER++SL P Y R++ AVVVYDIT++ S +
Sbjct: 48 GAAFLTQTVQLDDQTTIKYEIWDTAGQERYKSLAPMYYRNANCAVVVYDITSSASLEKAK 107
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
WI +++ + S ++I L
Sbjct: 108 NWIRELQRQADSQIVI-----------------------------------------ALA 126
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNK DL ++RQVST + + A+E N++F ETSAK NV ++
Sbjct: 127 GNKADLEERRQVSTADARQFAEEENLLFFETSAKDATNVHEI 168
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 86/124 (69%), Gaps = 1/124 (0%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
++ ++WDTAGQER++SL P Y R++ AVVVYDIT++ S + WI +++ + S ++I
Sbjct: 64 IKYEIWDTAGQERYKSLAPMYYRNANCAVVVYDITSSASLEKAKNWIRELQRQADSQIVI 123
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
L GNK DL ++RQVST + + A+E N++F ETSAK NV ++F+ +A LP +DS
Sbjct: 124 ALAGNKADLEERRQVSTADARQFAEEENLLFFETSAKDATNVHEIFQAIAKKLP-LDSAA 182
Query: 350 NKPP 353
++ P
Sbjct: 183 SRGP 186
>gi|395826386|ref|XP_003786399.1| PREDICTED: ras-related protein Rab-5C isoform 1 [Otolemur
garnettii]
gi|395826388|ref|XP_003786400.1| PREDICTED: ras-related protein Rab-5C isoform 2 [Otolemur
garnettii]
Length = 216
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEYQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALAG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL+ KR V +E + A + +++F+ETSAK NV ++
Sbjct: 134 --NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEI 174
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 82/138 (59%), Gaps = 15/138 (10%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP------ 343
L GNK DL+ KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQN 189
Query: 344 ---------GMDSTENKP 352
G+D EN P
Sbjct: 190 AAGAPGRNRGVDLQENNP 207
>gi|41393545|ref|NP_004574.2| ras-related protein Rab-5C isoform a [Homo sapiens]
gi|41393614|ref|NP_958842.1| ras-related protein Rab-5C isoform a [Homo sapiens]
gi|197101217|ref|NP_001127529.1| ras-related protein Rab-5C [Pongo abelii]
gi|350539365|ref|NP_001233312.1| ras-related protein Rab-5C [Pan troglodytes]
gi|388454362|ref|NP_001253100.1| ras-related protein Rab-5C [Macaca mulatta]
gi|332260865|ref|XP_003279501.1| PREDICTED: ras-related protein Rab-5C isoform 1 [Nomascus
leucogenys]
gi|332260867|ref|XP_003279502.1| PREDICTED: ras-related protein Rab-5C isoform 2 [Nomascus
leucogenys]
gi|397485574|ref|XP_003813918.1| PREDICTED: ras-related protein Rab-5C isoform 1 [Pan paniscus]
gi|397485576|ref|XP_003813919.1| PREDICTED: ras-related protein Rab-5C isoform 2 [Pan paniscus]
gi|397485580|ref|XP_003813921.1| PREDICTED: ras-related protein Rab-5C isoform 4 [Pan paniscus]
gi|426348253|ref|XP_004041752.1| PREDICTED: ras-related protein Rab-5C isoform 1 [Gorilla gorilla
gorilla]
gi|426348259|ref|XP_004041755.1| PREDICTED: ras-related protein Rab-5C isoform 4 [Gorilla gorilla
gorilla]
gi|441677628|ref|XP_004092752.1| PREDICTED: ras-related protein Rab-5C [Nomascus leucogenys]
gi|441677631|ref|XP_004092753.1| PREDICTED: ras-related protein Rab-5C [Nomascus leucogenys]
gi|38258923|sp|P51148.2|RAB5C_HUMAN RecName: Full=Ras-related protein Rab-5C; AltName: Full=L1880;
AltName: Full=RAB5L
gi|75054865|sp|Q5R7L7.1|RAB5C_PONAB RecName: Full=Ras-related protein Rab-5C
gi|7672665|gb|AAF66594.1|AF141304_1 small GTPase [Homo sapiens]
gi|20379052|gb|AAM21086.1|AF498938_1 small GTP binding protein RAB5C [Homo sapiens]
gi|49456757|emb|CAG46699.1| RAB5C [Homo sapiens]
gi|54695838|gb|AAV38291.1| RAB5C, member RAS oncogene family [Homo sapiens]
gi|55731054|emb|CAH92243.1| hypothetical protein [Pongo abelii]
gi|60822879|gb|AAX36624.1| RAB5C member RAS oncogene family [synthetic construct]
gi|61356072|gb|AAX41205.1| RAB5C member RAS oncogene family [synthetic construct]
gi|76779854|gb|AAI06040.1| RAB5C, member RAS oncogene family [Homo sapiens]
gi|109731489|gb|AAI14440.1| RAB5C, member RAS oncogene family [Homo sapiens]
gi|119581209|gb|EAW60805.1| RAB5C, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|119581210|gb|EAW60806.1| RAB5C, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|119581211|gb|EAW60807.1| RAB5C, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|190689983|gb|ACE86766.1| RAB5C, member RAS oncogene family protein [synthetic construct]
gi|190691355|gb|ACE87452.1| RAB5C, member RAS oncogene family protein [synthetic construct]
gi|261860716|dbj|BAI46880.1| RAB5C, member RAS oncogene family [synthetic construct]
gi|343960018|dbj|BAK63863.1| ras-related protein Rab-5C [Pan troglodytes]
gi|355568697|gb|EHH24978.1| RAB5L [Macaca mulatta]
gi|355754177|gb|EHH58142.1| hypothetical protein EGM_07930 [Macaca fascicularis]
gi|380815232|gb|AFE79490.1| ras-related protein Rab-5C isoform a [Macaca mulatta]
gi|383411673|gb|AFH29050.1| ras-related protein Rab-5C isoform a [Macaca mulatta]
gi|384941764|gb|AFI34487.1| ras-related protein Rab-5C isoform a [Macaca mulatta]
Length = 216
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEYQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALAG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL+ KR V +E + A + +++F+ETSAK NV ++
Sbjct: 134 --NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEI 174
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 82/138 (59%), Gaps = 15/138 (10%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP------ 343
L GNK DL+ KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQN 189
Query: 344 ---------GMDSTENKP 352
G+D EN P
Sbjct: 190 ATGAPGRNRGVDLQENNP 207
>gi|427781093|gb|JAA55998.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 255
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 105/215 (48%), Gaps = 63/215 (29%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
FK++ +G+ VGKT L+ R+ SF Y +T+G+DF
Sbjct: 59 FKVMLVGDSGVGKTCLLIRYKDGSF----------------------LSGAYISTVGMDF 96
Query: 74 LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
+K + ++D V+LQ+WDTAGQERFRS+ +Y RD+ +++YD++N SF T W+ +
Sbjct: 97 RNKVVTVDDYKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVSNKTSFDNTRAWLGE 156
Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
+ DV+IML +GNK D
Sbjct: 157 INEYAQDDVVIML-----------------------------------------IGNKAD 175
Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
++ RQV TE+GER A+E V F+ETSAK G NV+
Sbjct: 176 ITQDRQVRTEDGERLAREYGVAFMETSAKTGCNVE 210
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 79/114 (69%)
Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI 288
+V+LQ+WDTAGQERFRS+ +Y RD+ +++YD++N SF T W+ ++ DV+
Sbjct: 107 KVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVSNKTSFDNTRAWLGEINEYAQDDVV 166
Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
IML+GNK D++ RQV TE+GER A+E V F+ETSAK G NV+ F VA L
Sbjct: 167 IMLIGNKADITQDRQVRTEDGERLAREYGVAFMETSAKTGCNVELAFMAVAREL 220
>gi|226291514|gb|EEH46942.1| GTP-binding protein ypt5 [Paracoccidioides brasiliensis Pb18]
Length = 217
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 118/244 (48%), Gaps = 76/244 (31%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+FKLV LGE +VGK+SL+ RF+ D FD+ ++TIG
Sbjct: 17 QFKLVLLGESAVGKSSLVL-----------------------RFVKDQFDDYRESTIGAA 53
Query: 73 FLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
FL++T+ L E TV+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S + W+
Sbjct: 54 FLTQTISLDESTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKSWV 113
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
+++ + ++II L GNK
Sbjct: 114 KELQRQANENIII-----------------------------------------ALAGNK 132
Query: 192 TDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV------RLQLWDTAGQE 241
DL DKR + T + E A+E ++F ETSAK+ NV+++ +L L D AG
Sbjct: 133 LDLVMDSPDKRAIQTADAEAYAREAGLLFFETSAKSATNVRELFTAIAKKLPL-DQAGPR 191
Query: 242 RFRS 245
RS
Sbjct: 192 NLRS 195
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 78/118 (66%), Gaps = 4/118 (3%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S + W+ +++ + ++II
Sbjct: 67 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKSWVKELQRQANENIII 126
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL DKR + T + E A+E ++F ETSAK+ NV++LF +A LP
Sbjct: 127 ALAGNKLDLVMDSPDKRAIQTADAEAYAREAGLLFFETSAKSATNVRELFTAIAKKLP 184
>gi|508285|gb|AAA74081.1| Rab5c-like protein, similar to Canis familiaris Rab5c protein, PIR
Accession Number S38625 [Homo sapiens]
gi|642532|gb|AAB08927.1| ras-related small GTP binding protein Rab5 [Homo sapiens]
Length = 216
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEYQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALAG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL+ KR V +E + A + +++F+ETSAK NV ++
Sbjct: 134 --NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEI 174
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 82/138 (59%), Gaps = 15/138 (10%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP------ 343
L GNK DL+ KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQN 189
Query: 344 ---------GMDSTENKP 352
G+D EN P
Sbjct: 190 ATGAPGRNRGVDLQENNP 207
>gi|71895051|ref|NP_001026268.1| ras-related protein Rab-10 [Gallus gallus]
gi|82233742|sp|Q5ZIT5.1|RAB10_CHICK RecName: Full=Ras-related protein Rab-10
gi|53134733|emb|CAG32358.1| hypothetical protein RCJMB04_23k10 [Gallus gallus]
Length = 200
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 101/188 (53%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F+ T+ +TIGID KT+ L+ + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCVLFRFSDDAFNTTFISTIGIDLKIKTVELQGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITNA SF SKW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNAKSFENISKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV ML+GNK D+ DKR V +GE+ A+E + F ETSAKA N
Sbjct: 113 --------------EDVERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANIN 158
Query: 227 VKQVRLQL 234
+++ L L
Sbjct: 159 IEKAFLTL 166
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 75/112 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITNA SF SKW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
ML+GNK D+ DKR V +GE+ A+E + F ETSAKA N+++ F +A
Sbjct: 116 ERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANINIEKAFLTLA 167
>gi|47225841|emb|CAF98321.1| unnamed protein product [Tetraodon nigroviridis]
Length = 207
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 102/184 (55%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF DSF+ T+ +TIGIDF +T+ L+ + V+LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDSFNTTFISTIGIDFKIRTIELDGKRVKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDI+N SF WI ++ HA+S
Sbjct: 79 RGAMGIMLVYDISNEKSFENIKNWIRNIE------------------------EHASS-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++D+RQVS + GE+ A + V F+ETSAK+ N
Sbjct: 113 ---------------DVEKMILGNKCDMTDRRQVSKDRGEKLAIDYGVKFLETSAKSSLN 157
Query: 227 VKQV 230
V++
Sbjct: 158 VEEA 161
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 77/112 (68%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+V+LQ+WDTAGQERFR++ +Y R + ++VYDI+N SF WI ++ SDV
Sbjct: 55 KRVKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDISNEKSFENIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++D+RQVS + GE+ A + V F+ETSAK+ NV++ F +A
Sbjct: 115 EKMILGNKCDMTDRRQVSKDRGEKLAIDYGVKFLETSAKSSLNVEEAFYTMA 166
>gi|393213286|gb|EJC98783.1| ras-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 209
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 109/223 (48%), Gaps = 65/223 (29%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+FKLV LGE + VGK+SL+ RF+ D FD+ ++TIG
Sbjct: 6 QFKLVLLGE-----------------------SAVGKSSLVLRFVKDQFDDYRESTIGAA 42
Query: 73 FLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
FL++T+ LED TV+ ++WDTAGQER++SL P Y R++ AVVVYDIT + S + WI
Sbjct: 43 FLTQTVSLEDGSTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQSASLEKAKTWI 102
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
+++ + ++I L GNK
Sbjct: 103 RELQRQADPSIVI-----------------------------------------ALCGNK 121
Query: 192 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
DL ++RQV EE + AKE +M+ ETSAK G V + +L
Sbjct: 122 VDLEERRQVLQEEAQNYAKEEGLMWGETSAKTGLGVNDIFTEL 164
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 77/124 (62%), Gaps = 5/124 (4%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT + S + WI +++ + ++I
Sbjct: 56 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQSASLEKAKTWIRELQRQADPSIVI 115
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
L GNK DL ++RQV EE + AKE +M+ ETSAK G V +F +A LP +
Sbjct: 116 ALCGNKVDLEERRQVLQEEAQNYAKEEGLMWGETSAKTGLGVNDIFTELAKKLP-----Q 170
Query: 350 NKPP 353
PP
Sbjct: 171 TAPP 174
>gi|148237538|ref|NP_001083031.1| ras-related protein Rab-8A [Danio rerio]
gi|133778680|gb|AAI34060.1| Rab8a protein [Danio rerio]
Length = 207
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 104/188 (55%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA++
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHASA-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D+++KRQVS + GE+ A E + F+ETSAKA N
Sbjct: 113 ---------------DVEKMILGNKCDINEKRQVSKDRGEKLALEYGIKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
V+ L L
Sbjct: 158 VENAFLTL 165
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 76/112 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D+++KRQVS + GE+ A E + F+ETSAKA NV+ F +A
Sbjct: 115 EKMILGNKCDINEKRQVSKDRGEKLALEYGIKFMETSAKANINVENAFLTLA 166
>gi|212537727|ref|XP_002149019.1| RAB GTPase Ypt5, putative [Talaromyces marneffei ATCC 18224]
gi|210068761|gb|EEA22852.1| RAB GTPase Ypt5, putative [Talaromyces marneffei ATCC 18224]
Length = 218
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 120/252 (47%), Gaps = 76/252 (30%)
Query: 5 GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT 64
G G +FKLV LGE +VGK+SL+ RF+ D FD+
Sbjct: 9 GRPGARFAQFKLVLLGESAVGKSSLVL-----------------------RFVKDQFDDY 45
Query: 65 YQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
++TIG FL++T+ L E+ TV+ ++WDTAGQER++SL P Y R++ AVVVYDIT + S
Sbjct: 46 RESTIGAAFLTQTISLDENTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQSAS 105
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
+ W+ +++ + ++II
Sbjct: 106 LDKAKSWVKELQRQANENIII--------------------------------------- 126
Query: 184 IIMLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV------RLQ 233
L GNK DL DKR ++T + E AKE ++F ETSAK NVK++ +L
Sbjct: 127 --ALAGNKLDLVTENPDKRAIATADAEAYAKEAGLLFFETSAKTNTNVKELFTAIAKKLP 184
Query: 234 LWDTAGQERFRS 245
L D AG R+
Sbjct: 185 L-DQAGPRNLRT 195
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 77/118 (65%), Gaps = 4/118 (3%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT + S + W+ +++ + ++II
Sbjct: 67 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQSASLDKAKSWVKELQRQANENIII 126
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL DKR ++T + E AKE ++F ETSAK NVK+LF +A LP
Sbjct: 127 ALAGNKLDLVTENPDKRAIATADAEAYAKEAGLLFFETSAKTNTNVKELFTAIAKKLP 184
>gi|156095590|ref|XP_001613830.1| small GTPase Rab1A [Plasmodium vivax Sal-1]
gi|148802704|gb|EDL44103.1| small GTPase Rab1A, putative [Plasmodium vivax]
Length = 200
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 107/201 (53%), Gaps = 46/201 (22%)
Query: 34 MYDSFDNTYQATI-----VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ 88
M DS+D+ ++ + VGK+ L+ RF D++ ++Y +TIG+DF KT+ +ED+ ++LQ
Sbjct: 1 MNDSYDSLFKILLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIKTIEIEDKIIKLQ 60
Query: 89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVG 148
+WDTAGQERFR++ SY R + ++VYD+T+ +SF+ WI ++ DV +L
Sbjct: 61 IWDTAGQERFRTITSSYYRGAQGIIIVYDVTDRDSFNNVKNWIIEIEKYASEDVQKVL-- 118
Query: 149 SIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERK 208
+GNK DL + R VS EEG+
Sbjct: 119 ---------------------------------------IGNKIDLKNDRNVSYEEGKEL 139
Query: 209 AKELNVMFIETSAKAGYNVKQ 229
A N+ F+ETSAK +NV+Q
Sbjct: 140 ADSCNIQFLETSAKIAHNVEQ 160
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 79/126 (62%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQERFR++ SY R + ++VYD+T+ +SF+ WI ++ DV
Sbjct: 55 KIIKLQIWDTAGQERFRTITSSYYRGAQGIIIVYDVTDRDSFNNVKNWIIEIEKYASEDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+L+GNK DL + R VS EEG+ A N+ F+ETSAK +NV+Q F+ +A +
Sbjct: 115 QKVLIGNKIDLKNDRNVSYEEGKELADSCNIQFLETSAKIAHNVEQAFKTMAHEIKNKSQ 174
Query: 348 TENKPP 353
EN+
Sbjct: 175 LENQQK 180
>gi|348500156|ref|XP_003437639.1| PREDICTED: ras-related protein Rab-8B-like [Oreochromis niloticus]
Length = 206
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 102/183 (55%), Gaps = 41/183 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHAS--- 111
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+DV M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ N
Sbjct: 112 --------------ADVEKMVLGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSIN 157
Query: 227 VKQ 229
V++
Sbjct: 158 VEE 160
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 77/112 (68%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ NV++ F +A
Sbjct: 115 EKMVLGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSINVEEGFYTLA 166
>gi|289741231|gb|ADD19363.1| Rab protein 10 [Glossina morsitans morsitans]
Length = 204
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 107/200 (53%), Gaps = 46/200 (23%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F +T+ +TIGIDF KT+ L + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELRGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF KW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNEKSFENIVKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKR VS E GE A+E + F+ETSAK+ N
Sbjct: 113 --------------EDVEKMILGNKCDMADKRVVSKERGEAIAREHGIRFMETSAKSNIN 158
Query: 227 VKQVRLQLWD-----TAGQE 241
+++ +L + TAG+E
Sbjct: 159 IERAFCELAEAILDKTAGRE 178
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 84/131 (64%), Gaps = 6/131 (4%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITN SF KW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL----P 343
M++GNK D++DKR VS E GE A+E + F+ETSAK+ N+++ F +A A+
Sbjct: 116 EKMILGNKCDMADKRVVSKERGEAIAREHGIRFMETSAKSNINIERAFCELAEAILDKTA 175
Query: 344 GMDSTENKPPE 354
G +S EN PE
Sbjct: 176 GRESAEN--PE 184
>gi|432856212|ref|XP_004068408.1| PREDICTED: ras-related protein Rab-8A-like [Oryzias latipes]
Length = 206
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 102/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFADDAFNSTFISTIGIDFKIRTIDLNGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ +DV
Sbjct: 79 RGAMGIMLVYDITNEKSFENIKNWIRNIEEHASADV------------------------ 114
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
ER M++GNK D++D+RQVS E GE+ A E + F+ETSAKA N
Sbjct: 115 -----------ER------MVLGNKCDVNDRRQVSKERGEQLALEYGIKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
V+ L L
Sbjct: 158 VENAFLTL 165
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 77/114 (67%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +
Sbjct: 53 NGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIKNWIRNIEEHASA 112
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
DV M++GNK D++D+RQVS E GE+ A E + F+ETSAKA NV+ F +A
Sbjct: 113 DVERMVLGNKCDVNDRRQVSKERGEQLALEYGIKFMETSAKANINVENAFLTLA 166
>gi|312067383|ref|XP_003136717.1| Rab5 [Loa loa]
Length = 221
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 113/233 (48%), Gaps = 66/233 (28%)
Query: 4 SGDFGNPLR--KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
SG+ G P + +FKLV LGE +VGK+SL+ RF+ F
Sbjct: 9 SGNTGGPNKTCQFKLVLLGESAVGKSSLVL-----------------------RFVKGQF 45
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
++TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN
Sbjct: 46 HEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQ 105
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF + W+ +++ + +++I
Sbjct: 106 ESFTKAKNWVKELQRQASPNIVI------------------------------------- 128
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
L GNK DL++KR V EE + A++ ++F+ETSAK NV + L +
Sbjct: 129 ----ALSGNKADLANKRVVEYEEAQAYAEDNALLFMETSAKTAMNVNDIFLAI 177
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 75/114 (65%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQESFTKAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V EE + A++ ++F+ETSAK NV +F +A LP
Sbjct: 129 ALSGNKADLANKRVVEYEEAQAYAEDNALLFMETSAKTAMNVNDIFLAIAKKLP 182
>gi|156383922|ref|XP_001633081.1| predicted protein [Nematostella vectensis]
gi|156220146|gb|EDO41018.1| predicted protein [Nematostella vectensis]
Length = 206
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 102/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+
Sbjct: 79 RGAMGIMLVYDITNDKSFENIKNWIRNIE------------------------EHAS--- 111
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D+ D+RQVS E GE+ A E + F+ETSAKA N
Sbjct: 112 --------------QDVEKMVLGNKCDMEDRRQVSKERGEQLAVEYGIKFMETSAKASIN 157
Query: 227 VKQVRLQL 234
V++ L
Sbjct: 158 VEEAFFTL 165
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 81/128 (63%), Gaps = 2/128 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ DV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNDKSFENIKNWIRNIEEHASQDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP-GMD 346
M++GNK D+ D+RQVS E GE+ A E + F+ETSAKA NV++ F +A + MD
Sbjct: 115 EKMVLGNKCDMEDRRQVSKERGEQLAVEYGIKFMETSAKASINVEEAFFTLARDIKLKMD 174
Query: 347 ST-ENKPP 353
EN P
Sbjct: 175 KKLENSNP 182
>gi|124506171|ref|XP_001351683.1| Rab1b, GTPase [Plasmodium falciparum 3D7]
gi|13375179|emb|CAC34553.1| putative GTPase [Plasmodium falciparum 3D7]
gi|23504611|emb|CAD51490.1| Rab1b, GTPase [Plasmodium falciparum 3D7]
Length = 200
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 107/201 (53%), Gaps = 46/201 (22%)
Query: 34 MYDSFDNTYQATI-----VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ 88
M DS+D+ ++ + VGK+ L+ RF D++ ++Y +TIG+DF KT+ +ED+ ++LQ
Sbjct: 1 MNDSYDSLFKILLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIKTIEIEDKIIKLQ 60
Query: 89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVG 148
+WDTAGQERFR++ SY R + ++VYD+T+ +SF+ WI ++ DV +L
Sbjct: 61 IWDTAGQERFRTITSSYYRGAQGIIIVYDVTDRDSFNNVKNWIIEIEKYASEDVQKIL-- 118
Query: 149 SIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERK 208
+GNK DL + R VS EEG+
Sbjct: 119 ---------------------------------------IGNKIDLKNDRNVSYEEGKEL 139
Query: 209 AKELNVMFIETSAKAGYNVKQ 229
A N+ F+ETSAK +NV+Q
Sbjct: 140 ADSCNIQFLETSAKIAHNVEQ 160
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 77/122 (63%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQERFR++ SY R + ++VYD+T+ +SF+ WI ++ DV
Sbjct: 55 KIIKLQIWDTAGQERFRTITSSYYRGAQGIIIVYDVTDRDSFNNVKNWIIEIEKYASEDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+L+GNK DL + R VS EEG+ A N+ F+ETSAK +NV+Q F+ +A +
Sbjct: 115 QKILIGNKIDLKNDRNVSYEEGKELADSCNIQFLETSAKIAHNVEQAFKTMAYEIKNKSQ 174
Query: 348 TE 349
E
Sbjct: 175 HE 176
>gi|225556792|gb|EEH05080.1| GTP-binding protein ypt5 [Ajellomyces capsulatus G186AR]
gi|240281654|gb|EER45157.1| GTP-binding protein [Ajellomyces capsulatus H143]
gi|325087805|gb|EGC41115.1| GTP-binding protein ypt5 [Ajellomyces capsulatus H88]
Length = 217
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 123/250 (49%), Gaps = 68/250 (27%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
+ G G +FKLV LGE +VGK+SL+ RF+ D FD
Sbjct: 7 AGGRPGARFAQFKLVLLGESAVGKSSLVL-----------------------RFVKDQFD 43
Query: 63 NTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
+ ++TIG FL++T+ L E+ TV+ ++WDTAGQER++SL P Y R++ AVVVYDIT A
Sbjct: 44 DYRESTIGAAFLTQTISLDENTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQA 103
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
+S + W+ +++ + +++I L G+ +D V
Sbjct: 104 SSLDKAKSWVKELQRQANENIVIALAGN---------------------KLDLV------ 136
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV------RLQLW 235
TD DKR + T + E A+E ++F ETSAK NV+++ +L L
Sbjct: 137 ----------TDSPDKRAIQTVDAEAYAREAGLLFFETSAKTSTNVRELFTAIAKKLPL- 185
Query: 236 DTAGQERFRS 245
D AG RS
Sbjct: 186 DQAGPRNLRS 195
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 77/118 (65%), Gaps = 4/118 (3%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S + W+ +++ + +++I
Sbjct: 67 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKSWVKELQRQANENIVI 126
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL DKR + T + E A+E ++F ETSAK NV++LF +A LP
Sbjct: 127 ALAGNKLDLVTDSPDKRAIQTVDAEAYAREAGLLFFETSAKTSTNVRELFTAIAKKLP 184
>gi|389751301|gb|EIM92374.1| GTP-binding protein RAB5 [Stereum hirsutum FP-91666 SS1]
Length = 208
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 111/219 (50%), Gaps = 65/219 (29%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+FKLV LGE + VGK+SL+ RF+ D FD+ ++TIG
Sbjct: 6 QFKLVLLGE-----------------------SAVGKSSLVLRFVKDQFDDYRESTIGAA 42
Query: 73 FLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
FL++T+ L+D TV+ ++WDTAGQER++SL P Y R++ AVVVYDIT + S + WI
Sbjct: 43 FLTQTVNLDDGMTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQSASLEKARNWI 102
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
+++ + ++I L GNK
Sbjct: 103 RELQRQADPSIVI-----------------------------------------ALCGNK 121
Query: 192 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
+DL+ +RQV+ EE ++ A+E +M+ ETSAK+G V +
Sbjct: 122 SDLAARRQVTQEEAQKYAEEEGLMWAETSAKSGEGVSDI 160
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 78/114 (68%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT + S + WI +++ + ++I
Sbjct: 56 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQSASLEKARNWIRELQRQADPSIVI 115
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK+DL+ +RQV+ EE ++ A+E +M+ ETSAK+G V +F +A LP
Sbjct: 116 ALCGNKSDLAARRQVTQEEAQKYAEEEGLMWAETSAKSGEGVSDIFTAIAKKLP 169
>gi|195134256|ref|XP_002011553.1| GI11034 [Drosophila mojavensis]
gi|193906676|gb|EDW05543.1| GI11034 [Drosophila mojavensis]
Length = 204
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 108/200 (54%), Gaps = 46/200 (23%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F +T+ +TIGIDF KT+ L + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELRGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF KW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNEKSFENIVKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D+SDKR VS E GE A+E ++ F+ETSAK+ N
Sbjct: 113 --------------EDVEKMILGNKCDMSDKRVVSKERGEAIAREHSIRFMETSAKSNIN 158
Query: 227 VKQVRLQLWD-----TAGQE 241
+++ +L + T+G+E
Sbjct: 159 IERAFCELAEAILDKTSGRE 178
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/131 (45%), Positives = 85/131 (64%), Gaps = 6/131 (4%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITN SF KW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL----P 343
M++GNK D+SDKR VS E GE A+E ++ F+ETSAK+ N+++ F +A A+
Sbjct: 116 EKMILGNKCDMSDKRVVSKERGEAIAREHSIRFMETSAKSNINIERAFCELAEAILDKTS 175
Query: 344 GMDSTENKPPE 354
G +S EN PE
Sbjct: 176 GRESAEN--PE 184
>gi|403217405|emb|CCK71899.1| hypothetical protein KNAG_0I01080 [Kazachstania naganishii CBS
8797]
Length = 253
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 112/230 (48%), Gaps = 68/230 (29%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
NP+ KLV LGE +VGK+S++ R F+ + F + T
Sbjct: 3 NPVTSIKLVLLGEVAVGKSSIVLR-----------------------FVSNDFAENKEPT 39
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IG FL++ + + + T++ ++WDTAGQERF SL P Y R++ A+VVYD+T SF +
Sbjct: 40 IGAAFLTQRVNINEHTIKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKAR 99
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
W+ ++ + D+II L V
Sbjct: 100 HWVKELHEQASKDIIIAL-----------------------------------------V 118
Query: 189 GNKTDLSD----KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
GNK D+ D +R+V+ EEGE+ A+E N++F ETSAK G NV +V L++
Sbjct: 119 GNKIDMLDEDPTERKVAREEGEKLAQEENLLFFETSAKTGANVNEVFLKI 168
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 92/150 (61%), Gaps = 6/150 (4%)
Query: 198 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVA 257
R VS + E K + F+ + + N ++ ++WDTAGQERF SL P Y R++ A
Sbjct: 26 RFVSNDFAENKEPTIGAAFL--TQRVNINEHTIKFEIWDTAGQERFASLAPMYYRNAQAA 83
Query: 258 VVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD----KRQVSTEEGERKA 313
+VVYD+T SF + W+ ++ + D+II LVGNK D+ D +R+V+ EEGE+ A
Sbjct: 84 LVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLDEDPTERKVAREEGEKLA 143
Query: 314 KELNVMFIETSAKAGYNVKQLFRRVAAALP 343
+E N++F ETSAK G NV ++F ++ +P
Sbjct: 144 QEENLLFFETSAKTGANVNEVFLKIGENVP 173
>gi|307107707|gb|EFN55949.1| hypothetical protein CHLNCDRAFT_48772 [Chlorella variabilis]
Length = 222
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 85/116 (73%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
++ Q+WDTAGQER+R++ +Y R + A++VYD+T A+SF +W++++R SD+++
Sbjct: 63 IKCQIWDTAGQERYRAITNAYYRGAVGALLVYDVTRASSFESIPRWLNELREHASSDMVV 122
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
MLVGNKTDL D+R VS ++G+ A+ ++FIETSA G NV+Q F RVAA + G+
Sbjct: 123 MLVGNKTDLVDQRDVSMQQGQELAQREGLLFIETSALDGSNVEQAFSRVAAEIHGI 178
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 100/184 (54%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT+ ++RF F + + TIG++F +K + +E ++ Q+WDTAGQER+R++ +Y
Sbjct: 25 VGKTNCLSRFCRGEFQASSKPTIGVEFATKALTIEGDLIKCQIWDTAGQERYRAITNAYY 84
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + A++VYD+T A+SF +W++++R SD+++ML
Sbjct: 85 RGAVGALLVYDVTRASSFESIPRWLNELREHASSDMVVML-------------------- 124
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
VGNKTDL D+R VS ++G+ A+ ++FIETSA G N
Sbjct: 125 ---------------------VGNKTDLVDQRDVSMQQGQELAQREGLLFIETSALDGSN 163
Query: 227 VKQV 230
V+Q
Sbjct: 164 VEQA 167
>gi|12083645|ref|NP_073183.1| ras-related protein Rab-5A [Rattus norvegicus]
gi|3309068|gb|AAC26004.1| small GTP-binding protein rab5 [Rattus norvegicus]
gi|149027113|gb|EDL82849.1| RAB5A, member RAS oncogene family [Rattus norvegicus]
gi|171847366|gb|AAI61848.1| Rab5a protein [Rattus norvegicus]
Length = 215
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 15 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEFQES 51
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 52 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFSRA 111
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 112 KNWVKELQRQASPNIVIALSG--------------------------------------- 132
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 133 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI 173
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFSRAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 182
>gi|195173155|ref|XP_002027359.1| GL15675 [Drosophila persimilis]
gi|198465444|ref|XP_002134976.1| GA23499 [Drosophila pseudoobscura pseudoobscura]
gi|194113202|gb|EDW35245.1| GL15675 [Drosophila persimilis]
gi|198150162|gb|EDY73603.1| GA23499 [Drosophila pseudoobscura pseudoobscura]
Length = 207
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 100/188 (53%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F+ T+ +TIGIDF +T+ L+++ ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCILFRFSEDAFNTTFISTIGIDFKIRTIELDNKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDIT SF WI ++ +DV ML
Sbjct: 79 RGAMGIMLVYDITQEKSFENIKNWIRNIEENASADVEKML-------------------- 118
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+GNK +L DKRQVS E GE+ A E + F+ETSAKA N
Sbjct: 119 ---------------------LGNKCELHDKRQVSKERGEQLAIEYGIKFMETSAKASIN 157
Query: 227 VKQVRLQL 234
V++ L L
Sbjct: 158 VEEAFLTL 165
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 81/130 (62%), Gaps = 3/130 (2%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDIT SF WI ++ +DV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITQEKSFENIKNWIRNIEENASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
ML+GNK +L DKRQVS E GE+ A E + F+ETSAKA NV++ F +A+ +
Sbjct: 115 EKMLLGNKCELHDKRQVSKERGEQLAIEYGIKFMETSAKASINVEEAFLTLASDIKAKTE 174
Query: 348 TE---NKPPE 354
N PP+
Sbjct: 175 KRMEANNPPK 184
>gi|405961918|gb|EKC27651.1| Ras-related protein Rab-5C [Crassostrea gigas]
Length = 213
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 110/224 (49%), Gaps = 64/224 (28%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+ +FKLV LGE + VGK+SL+ RF+ F ++TIG
Sbjct: 18 ICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEYQESTIG 54
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W
Sbjct: 55 AAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQDTFGRAKNW 114
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
+ +++ + +++I L GN
Sbjct: 115 VKELQRQASPNIVI-----------------------------------------ALAGN 133
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
K+DL+ KR V EE + A+E +++F+ETSAK NV + L +
Sbjct: 134 KSDLAQKRMVEYEEAQAYAEENSLLFMETSAKTAMNVNDIFLAI 177
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 79/123 (64%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQDTFGRAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
L GNK+DL+ KR V EE + A+E +++F+ETSAK NV +F +A LP +
Sbjct: 129 ALAGNKSDLAQKRMVEYEEAQAYAEENSLLFMETSAKTAMNVNDIFLAIAKKLPKNEGGG 188
Query: 350 NKP 352
P
Sbjct: 189 PAP 191
>gi|387017940|gb|AFJ51088.1| ras-related protein Rab-5A-like [Crotalus adamanteus]
Length = 215
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 15 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 51
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D T++ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 52 TIGAAFLTQTVCLDDTTIKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 111
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 112 KNWVKELQRQASPNIVIALAG--------------------------------------- 132
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 133 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSVNVNEI 173
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
++ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 IKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 129 ALAGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSVNVNEIFMAIAKKLP 182
>gi|355714965|gb|AES05179.1| RAB5C, member RAS oncoprotein family [Mustela putorius furo]
Length = 215
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 111/227 (48%), Gaps = 64/227 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 48 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEYQES 84
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 85 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA 144
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 145 KNWVKELQRQASPNIVIALAG--------------------------------------- 165
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NK DL+ KR V +E + A + +++F+ETSAK NV ++ + +
Sbjct: 166 --NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 210
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 102 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 161
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL+ KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 162 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLP 215
>gi|13385374|ref|NP_080163.1| ras-related protein Rab-5A [Mus musculus]
gi|32171710|sp|Q9CQD1.1|RAB5A_MOUSE RecName: Full=Ras-related protein Rab-5A
gi|12842239|dbj|BAB25527.1| unnamed protein product [Mus musculus]
gi|12845986|dbj|BAB26985.1| unnamed protein product [Mus musculus]
gi|13436026|gb|AAH04842.1| RAB5A, member RAS oncogene family [Mus musculus]
gi|21706419|gb|AAH34370.1| RAB5A, member RAS oncogene family [Mus musculus]
gi|26349503|dbj|BAC38391.1| unnamed protein product [Mus musculus]
gi|66396634|gb|AAH96481.1| Rab5a protein [Mus musculus]
gi|74139798|dbj|BAE31744.1| unnamed protein product [Mus musculus]
gi|74185181|dbj|BAE30082.1| unnamed protein product [Mus musculus]
gi|74198271|dbj|BAE35305.1| unnamed protein product [Mus musculus]
gi|74214066|dbj|BAE29448.1| unnamed protein product [Mus musculus]
gi|74219518|dbj|BAE29531.1| unnamed protein product [Mus musculus]
gi|112292955|dbj|BAF02855.1| Rab5A [Mus musculus]
gi|148691716|gb|EDL23663.1| RAB5A, member RAS oncogene family [Mus musculus]
Length = 215
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 15 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEFQES 51
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 52 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 111
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 112 KNWVKELQRQASPNIVIALSG--------------------------------------- 132
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 133 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI 173
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 182
>gi|167537652|ref|XP_001750494.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771034|gb|EDQ84708.1| predicted protein [Monosiga brevicollis MX1]
Length = 204
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 100/184 (54%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D F++T+ +TIGIDF KT+ L+D+ ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCILFRFSEDQFNSTFISTIGIDFKIKTIELDDKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDIT SF WI ++ SDV
Sbjct: 79 RGAMGIMLVYDITAEKSFDNIKTWIRNIEQNASSDV------------------------ 114
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
ER M++GNK D+ DKR VSTE+GE+ A E V F ETSAK+ +
Sbjct: 115 -----------ER------MILGNKCDMEDKRVVSTEQGEKLAAEYGVPFFETSAKSKIH 157
Query: 227 VKQV 230
V++
Sbjct: 158 VEEA 161
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 83/129 (64%), Gaps = 1/129 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDIT SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITAEKSFDNIKTWIRNIEQNASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP-GMD 346
M++GNK D+ DKR VSTE+GE+ A E V F ETSAK+ +V++ F +A ++ MD
Sbjct: 115 ERMILGNKCDMEDKRVVSTEQGEKLAAEYGVPFFETSAKSKIHVEEAFFAMARSIKQKMD 174
Query: 347 STENKPPED 355
S E P +
Sbjct: 175 SKEVSTPHE 183
>gi|169596668|ref|XP_001791758.1| hypothetical protein SNOG_01101 [Phaeosphaeria nodorum SN15]
gi|111071476|gb|EAT92596.1| hypothetical protein SNOG_01101 [Phaeosphaeria nodorum SN15]
Length = 222
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 120/251 (47%), Gaps = 76/251 (30%)
Query: 5 GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT 64
G G+ +FKLV LGE + VGK+SL+ RF+ D FD+
Sbjct: 12 GGSGSRFAQFKLVLLGE-----------------------SAVGKSSLVLRFVKDQFDDY 48
Query: 65 YQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
++TIG FL++T+ L E+ TV+ ++WDTAGQER++SL P Y R++ AVVVYDIT A S
Sbjct: 49 RESTIGAAFLTQTIALDENTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQAAS 108
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
+ W+ +++ + ++II
Sbjct: 109 LDKAKAWVKELQRQANENIII--------------------------------------- 129
Query: 184 IIMLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV------RLQ 233
L GNK DL DKR + T + E+ A+E ++F ETSAK NV+++ +L
Sbjct: 130 --ALAGNKLDLVTESPDKRAIQTADAEQYAREAGLLFFETSAKTSENVRELFTAIAKKLP 187
Query: 234 LWDTAGQERFR 244
L D AG R
Sbjct: 188 L-DQAGPRNLR 197
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 77/118 (65%), Gaps = 4/118 (3%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A S + W+ +++ + ++II
Sbjct: 70 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQAASLDKAKAWVKELQRQANENIII 129
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL DKR + T + E+ A+E ++F ETSAK NV++LF +A LP
Sbjct: 130 ALAGNKLDLVTESPDKRAIQTADAEQYAREAGLLFFETSAKTSENVRELFTAIAKKLP 187
>gi|221052324|ref|XP_002257738.1| Rab5c GTPase [Plasmodium knowlesi strain H]
gi|193807569|emb|CAQ38074.1| Rab5c GTPase, putative [Plasmodium knowlesi strain H]
Length = 213
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 75/114 (65%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
++ ++WDTAGQER+RSL P Y R ++ AV+VYDITN SF WI ++++ +D+II
Sbjct: 76 IKFEIWDTAGQERYRSLAPMYYRGASAAVIVYDITNKKSFEGAKGWIHELKSVHSNDIII 135
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL R V E E A N++FIETSAK G NV +LF R+A LP
Sbjct: 136 ALAGNKKDLEKNRVVDRELAESFANSNNILFIETSAKTGQNVNELFLRIAKKLP 189
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 96/190 (50%), Gaps = 41/190 (21%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ ++ RF + F ++TIG F+++ + + + T++ ++WDTAGQER+RSL P
Sbjct: 36 TSVGKSCIVVRFAKNEFYEYQESTIGAAFMTQLIDIGECTIKFEIWDTAGQERYRSLAPM 95
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R ++ AV+VYDITN SF WI ++++ +D+II
Sbjct: 96 YYRGASAAVIVYDITNKKSFEGAKGWIHELKSVHSNDIII-------------------- 135
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
L GNK DL R V E E A N++FIETSAK G
Sbjct: 136 ---------------------ALAGNKKDLEKNRVVDRELAESFANSNNILFIETSAKTG 174
Query: 225 YNVKQVRLQL 234
NV ++ L++
Sbjct: 175 QNVNELFLRI 184
>gi|156095051|ref|XP_001613561.1| small GTPase Rab5c [Plasmodium vivax Sal-1]
gi|148802435|gb|EDL43834.1| small GTPase Rab5c, putative [Plasmodium vivax]
Length = 214
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 75/114 (65%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
++ ++WDTAGQER+RSL P Y R ++ AV+VYDITN SF WI ++++ +D+II
Sbjct: 76 IKFEIWDTAGQERYRSLAPMYYRGASAAVIVYDITNKKSFEGAKGWIHELKSVHSNDIII 135
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL R V E E A N++FIETSAK G NV +LF R+A LP
Sbjct: 136 ALAGNKKDLEKNRVVDRELAESFANSNNILFIETSAKTGQNVNELFLRIAKKLP 189
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 96/190 (50%), Gaps = 41/190 (21%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ ++ RF + F ++TIG F+++ + + + T++ ++WDTAGQER+RSL P
Sbjct: 36 TSVGKSCIVVRFAKNEFYEYQESTIGAAFMTQLIDIGECTIKFEIWDTAGQERYRSLAPM 95
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R ++ AV+VYDITN SF WI ++++ +D+II
Sbjct: 96 YYRGASAAVIVYDITNKKSFEGAKGWIHELKSVHSNDIII-------------------- 135
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
L GNK DL R V E E A N++FIETSAK G
Sbjct: 136 ---------------------ALAGNKKDLEKNRVVDRELAESFANSNNILFIETSAKTG 174
Query: 225 YNVKQVRLQL 234
NV ++ L++
Sbjct: 175 QNVNELFLRI 184
>gi|148222944|ref|NP_001080714.1| RAB5C, member RAS oncogene family [Xenopus laevis]
gi|33416792|gb|AAH56058.1| Rab5-prov protein [Xenopus laevis]
Length = 215
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 108/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEYQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN +F +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTETFARA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALSG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DLS KR V +E + A + +++F+ETSAK NV ++
Sbjct: 134 --NKADLSSKRAVDFQEAQAYADDNSLLFMETSAKTAMNVNEI 174
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 82/139 (58%), Gaps = 15/139 (10%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN +F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTETFARAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP------ 343
L GNK DLS KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALSGNKADLSSKRAVDFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQN 189
Query: 344 ---------GMDSTENKPP 353
G+D EN PP
Sbjct: 190 AQSTTGRNRGVDLQENNPP 208
>gi|432958931|ref|XP_004086115.1| PREDICTED: ras-related protein Rab-8B-like [Oryzias latipes]
Length = 206
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 104/188 (55%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVDLDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ +DV
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV------------------------ 114
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
ER M++GNK D++D+RQVS E GE+ A + ++ F+ETSAK+ N
Sbjct: 115 -----------ER------MVLGNKCDMNDRRQVSKERGEKLAIDYSIKFLETSAKSSIN 157
Query: 227 VKQVRLQL 234
V++ L L
Sbjct: 158 VEEAFLTL 165
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 78/112 (69%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++D+RQVS E GE+ A + ++ F+ETSAK+ NV++ F +A
Sbjct: 115 ERMVLGNKCDMNDRRQVSKERGEKLAIDYSIKFLETSAKSSINVEEAFLTLA 166
>gi|326435491|gb|EGD81061.1| small GTP binding protein RAB8 [Salpingoeca sp. ATCC 50818]
Length = 240
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 100/188 (53%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F+ ++ +TIGIDF +T+ L+D+ ++LQ+WDTAGQERFR++ +Y
Sbjct: 20 VGKTCVLFRFSDDAFNASFISTIGIDFKIRTIELDDKKIKLQIWDTAGQERFRTITTAYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ DV +ML
Sbjct: 80 RGAMGIMIVYDITNPKSFDNVKNWIKNIEENASEDVELML-------------------- 119
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+GNK D+ + R VS E+GE+ A + + F+ETSAKA N
Sbjct: 120 ---------------------LGNKCDMEESRAVSKEQGEKLASDYGIPFLETSAKANIN 158
Query: 227 VKQVRLQL 234
V++ QL
Sbjct: 159 VEEAFFQL 166
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 76/112 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMIVYDITNPKSFDNVKNWIKNIEENASEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
+ML+GNK D+ + R VS E+GE+ A + + F+ETSAKA NV++ F ++A
Sbjct: 116 ELMLLGNKCDMEESRAVSKEQGEKLASDYGIPFLETSAKANINVEEAFFQLA 167
>gi|291231114|ref|XP_002735510.1| PREDICTED: mel transforming oncogene-like [Saccoglossus
kowalevskii]
Length = 208
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 104/188 (55%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF KWI ++ HA+
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKKWIRNIE------------------------EHAS--- 111
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+DV M++GNK D+ D+R V+ E GE+ A E + F+ETSAKA N
Sbjct: 112 --------------ADVEKMILGNKCDMEDRRTVTKERGEQLAIEYGIKFMETSAKASVN 157
Query: 227 VKQVRLQL 234
V++ + L
Sbjct: 158 VEEAFITL 165
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 81/127 (63%), Gaps = 1/127 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF KWI ++ +DV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKKWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG-MD 346
M++GNK D+ D+R V+ E GE+ A E + F+ETSAKA NV++ F +A + G MD
Sbjct: 115 EKMILGNKCDMEDRRTVTKERGEQLAIEYGIKFMETSAKASVNVEEAFITLARDIKGKMD 174
Query: 347 STENKPP 353
P
Sbjct: 175 KKMESSP 181
>gi|402083928|gb|EJT78946.1| GTP-binding protein ypt5 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 221
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 113/231 (48%), Gaps = 69/231 (29%)
Query: 5 GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT 64
G GN +FKLV LGE +VGK+S++ R F+ D FD+
Sbjct: 11 GMGGNRFAQFKLVLLGESAVGKSSIVLR-----------------------FVKDQFDSY 47
Query: 65 YQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
++TIG FL++T+ L E+ TV+ ++WDTAGQER++SL P Y R++ AVVVYDIT + S
Sbjct: 48 RESTIGAAFLTQTISLDENTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQSAS 107
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
+ W+ +++ + ++II
Sbjct: 108 LDKAKAWVKELQRQANENIII--------------------------------------- 128
Query: 184 IIMLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
L GNK DL DKR VST + E A+E ++F ETSAK NV+++
Sbjct: 129 --ALAGNKLDLVTEQPDKRAVSTADAEAYAREAGLLFFETSAKTAENVREL 177
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 77/118 (65%), Gaps = 4/118 (3%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT + S + W+ +++ + ++II
Sbjct: 69 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQSASLDKAKAWVKELQRQANENIII 128
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL DKR VST + E A+E ++F ETSAK NV++LF +A LP
Sbjct: 129 ALAGNKLDLVTEQPDKRAVSTADAEAYAREAGLLFFETSAKTAENVRELFTAIAKKLP 186
>gi|297671900|ref|XP_002814060.1| PREDICTED: ras-related protein Rab-5A isoform 1 [Pongo abelii]
gi|332215304|ref|XP_003256781.1| PREDICTED: ras-related protein Rab-5A isoform 1 [Nomascus
leucogenys]
Length = 215
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 15 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 51
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 52 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 111
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 112 KNWVKELQRQASPNIVIALSG--------------------------------------- 132
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 133 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI 173
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 182
>gi|50979150|ref|NP_001003317.1| ras-related protein Rab-5A [Canis lupus familiaris]
gi|386781059|ref|NP_001248077.1| ras-related protein Rab-5A [Macaca mulatta]
gi|149729693|ref|XP_001495368.1| PREDICTED: ras-related protein Rab-5A-like [Equus caballus]
gi|296228179|ref|XP_002759690.1| PREDICTED: ras-related protein Rab-5A-like [Callithrix jacchus]
gi|301784142|ref|XP_002927485.1| PREDICTED: ras-related protein Rab-5A-like [Ailuropoda melanoleuca]
gi|395816586|ref|XP_003781781.1| PREDICTED: ras-related protein Rab-5A isoform 1 [Otolemur
garnettii]
gi|402861674|ref|XP_003895210.1| PREDICTED: ras-related protein Rab-5A [Papio anubis]
gi|410971499|ref|XP_003992206.1| PREDICTED: ras-related protein Rab-5A isoform 1 [Felis catus]
gi|131794|sp|P18066.1|RAB5A_CANFA RecName: Full=Ras-related protein Rab-5A
gi|47117089|sp|P61271.1|RAB5A_MACFA RecName: Full=Ras-related protein Rab-5A
gi|164056|gb|AAA30889.1| GTP-binding protein (rab5) [Canis lupus familiaris]
gi|14388408|dbj|BAB60752.1| hypothetical protein [Macaca fascicularis]
gi|281349668|gb|EFB25252.1| hypothetical protein PANDA_017269 [Ailuropoda melanoleuca]
gi|351700929|gb|EHB03848.1| Ras-related protein Rab-5A [Heterocephalus glaber]
gi|380787143|gb|AFE65447.1| ras-related protein Rab-5A [Macaca mulatta]
gi|383413157|gb|AFH29792.1| ras-related protein Rab-5A [Macaca mulatta]
gi|384941102|gb|AFI34156.1| ras-related protein Rab-5A [Macaca mulatta]
gi|431917016|gb|ELK16772.1| Ras-related protein Rab-5A [Pteropus alecto]
Length = 215
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 15 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 51
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 52 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 111
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 112 KNWVKELQRQASPNIVIALSG--------------------------------------- 132
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 133 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI 173
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 182
>gi|19923262|ref|NP_004153.2| ras-related protein Rab-5A [Homo sapiens]
gi|426339659|ref|XP_004033761.1| PREDICTED: ras-related protein Rab-5A [Gorilla gorilla gorilla]
gi|1346958|sp|P20339.2|RAB5A_HUMAN RecName: Full=Ras-related protein Rab-5A
gi|20379048|gb|AAM21084.1|AF498936_1 small GTP binding protein RAB5A [Homo sapiens]
gi|27462979|gb|AAO15677.1|AF464088_1 cervical cancer oncogene 10 protein [Homo sapiens]
gi|12654847|gb|AAH01267.1| RAB5A, member RAS oncogene family [Homo sapiens]
gi|17390678|gb|AAH18288.1| RAB5A, member RAS oncogene family [Homo sapiens]
gi|49168472|emb|CAG38731.1| RAB5A [Homo sapiens]
gi|117644362|emb|CAL37675.1| hypothetical protein [synthetic construct]
gi|117644826|emb|CAL37879.1| hypothetical protein [synthetic construct]
gi|119584705|gb|EAW64301.1| RAB5A, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|119584706|gb|EAW64302.1| RAB5A, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|119584707|gb|EAW64303.1| RAB5A, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|123981774|gb|ABM82716.1| RAB5A, member RAS oncogene family [synthetic construct]
gi|123996593|gb|ABM85898.1| RAB5A, member RAS oncogene family [synthetic construct]
gi|189069166|dbj|BAG35504.1| unnamed protein product [Homo sapiens]
gi|261860476|dbj|BAI46760.1| RAB5A, member RAS oncogene family [synthetic construct]
Length = 215
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 15 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 51
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 52 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 111
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 112 KNWVKELQRQASPNIVIALSG--------------------------------------- 132
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 133 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI 173
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 182
>gi|392333087|ref|XP_003752788.1| PREDICTED: ras-related protein Rab-5A-like [Rattus norvegicus]
gi|392353206|ref|XP_003751425.1| PREDICTED: ras-related protein Rab-5A-like [Rattus norvegicus]
Length = 215
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 15 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEFQES 51
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 52 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFSRA 111
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 112 KNWVKELQRQASPNIVIALSG--------------------------------------- 132
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 133 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTPMNVNEI 173
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFSRAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTPMNVNEIFMAIAKKLP 182
>gi|354476585|ref|XP_003500505.1| PREDICTED: ras-related protein Rab-5A-like [Cricetulus griseus]
gi|344240325|gb|EGV96428.1| Ras-related protein Rab-5A [Cricetulus griseus]
Length = 215
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 15 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEFQES 51
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 52 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 111
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 112 KNWVKELQRQASPNIVIALSG--------------------------------------- 132
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 133 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSVNVNEI 173
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSVNVNEIFMAIAKKLP 182
>gi|307110175|gb|EFN58411.1| GTP-binding protein YPTC4 [Chlorella variabilis]
Length = 217
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 80/117 (68%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
KQ++LQ+WDTAGQE FRS+ SY R + A++VYDIT +F + W++D R ++
Sbjct: 53 KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFEHLASWLEDARQHANPNM 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
IML+GNK DL +R VSTEEGE+ AKE ++F+ETSAK NV++ F A A+ G
Sbjct: 113 TIMLIGNKADLGHRRAVSTEEGEQFAKEHGLVFLETSAKTALNVEEAFINTARAIHG 169
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 96/186 (51%), Gaps = 41/186 (22%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ L+ +F F + TIG++F ++ + ++ + ++LQ+WDTAGQE FRS+ S
Sbjct: 15 TGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRS 74
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R + A++VYDIT +F + W++D R ++ IML
Sbjct: 75 YYRGAAGALLVYDITRRETFEHLASWLEDARQHANPNMTIML------------------ 116
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
+GNK DL +R VSTEEGE+ AKE ++F+ETSAK
Sbjct: 117 -----------------------IGNKADLGHRRAVSTEEGEQFAKEHGLVFLETSAKTA 153
Query: 225 YNVKQV 230
NV++
Sbjct: 154 LNVEEA 159
>gi|387861356|gb|AFK08607.1| Rab GTPase [Litopenaeus vannamei]
Length = 210
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 110/224 (49%), Gaps = 64/224 (28%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+ +FKLV LGE +VGK+SL+ RF+ F ++TIG
Sbjct: 16 ICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEYQESTIG 52
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W
Sbjct: 53 AAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQDTFGRAKTW 112
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
+ +++ + +++I L GN
Sbjct: 113 VKELQRQASPNIVI-----------------------------------------ALAGN 131
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
K DL++KR V EE + A+E +++F+ETSAK NV + L +
Sbjct: 132 KADLANKRMVEYEEAQTYAEENSLLFMETSAKTAMNVNDIFLAI 175
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 82/124 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 67 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQDTFGRAKTWVKELQRQASPNIVI 126
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
L GNK DL++KR V EE + A+E +++F+ETSAK NV +F +A LP DST
Sbjct: 127 ALAGNKADLANKRMVEYEEAQTYAEENSLLFMETSAKTAMNVNDIFLAIAKKLPKSDSTA 186
Query: 350 NKPP 353
+ P
Sbjct: 187 SGSP 190
>gi|126341423|ref|XP_001369723.1| PREDICTED: ras-related protein Rab-5A-like [Monodelphis domestica]
Length = 215
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 108/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 15 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 51
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 52 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 111
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 112 KNWVKELQRQASPNIVIALAG--------------------------------------- 132
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL+ KR V +E + A + +++F+ETSAK NV ++
Sbjct: 133 --NKADLASKRAVDFQEAQSYADDNSLLFMETSAKTSVNVNEI 173
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 75/114 (65%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL+ KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 129 ALAGNKADLASKRAVDFQEAQSYADDNSLLFMETSAKTSVNVNEIFMAIAKKLP 182
>gi|410895511|ref|XP_003961243.1| PREDICTED: ras-related protein Rab-5C-like [Takifugu rubripes]
Length = 221
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 110/222 (49%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
N + +FKLV LGE +VGK+SL+ RF+ F ++T
Sbjct: 18 NKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQEST 54
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN+++F +
Sbjct: 55 IGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNSDTFARAK 114
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
W+ +++ + +++I L
Sbjct: 115 NWVKELQRQASPNIVI-----------------------------------------ALA 133
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNK D+++KR V +E + A E +++F+ETSAK NV ++
Sbjct: 134 GNKADIANKRAVEHQEAQTYADENSLLFMETSAKTAINVNEI 175
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 78/114 (68%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN+++F + W+ +++ + +++I
Sbjct: 71 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNSDTFARAKNWVKELQRQASPNIVI 130
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK D+++KR V +E + A E +++F+ETSAK NV ++F +A LP
Sbjct: 131 ALAGNKADIANKRAVEHQEAQTYADENSLLFMETSAKTAINVNEIFMAIAKKLP 184
>gi|403346064|gb|EJY72416.1| RAB-2,4,14, putative [Oxytricha trifallax]
Length = 222
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 104/189 (55%), Gaps = 41/189 (21%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ L+ +F F + TIG++F ++T+ ++++ ++LQ+WDTAGQE F+S+ S
Sbjct: 15 TGVGKSCLLLQFTDKRFRQQHDLTIGVEFGARTVQIQNKNIKLQIWDTAGQESFKSITRS 74
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R + A++VYDIT ++F+ ++W+++VR D+ IML
Sbjct: 75 YYRGAAGALLVYDITRRDTFNHLTRWLEEVRQNGNPDMTIML------------------ 116
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
+GNK DL +RQVS EEGER AKE ++F ETSAK
Sbjct: 117 -----------------------IGNKCDLDARRQVSFEEGERFAKENGLIFTETSAKTA 153
Query: 225 YNVKQVRLQ 233
+NV++ LQ
Sbjct: 154 FNVEEAFLQ 162
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 79/108 (73%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQE F+S+ SY R + A++VYDIT ++F+ ++W+++VR D+
Sbjct: 53 KNIKLQIWDTAGQESFKSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEVRQNGNPDM 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
IML+GNK DL +RQVS EEGER AKE ++F ETSAK +NV++ F
Sbjct: 113 TIMLIGNKCDLDARRQVSFEEGERFAKENGLIFTETSAKTAFNVEEAF 160
>gi|168049241|ref|XP_001777072.1| Rab2/RabB-family small GTPase [Physcomitrella patens subsp. patens]
gi|162671515|gb|EDQ58065.1| Rab2/RabB-family small GTPase [Physcomitrella patens subsp. patens]
Length = 213
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 81/115 (70%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQE FRS+ SY R + A++VYDIT +F+ + W++D R S++
Sbjct: 53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANSNM 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
IML+GNK DL+ +R VSTEEGER AKE ++F+ETSAK +NV+ F AA +
Sbjct: 113 TIMLIGNKCDLAHRRAVSTEEGERFAKENGLVFMETSAKTAHNVEDAFINTAAKI 167
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 100/184 (54%), Gaps = 41/184 (22%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ L+ +F F + TIG++F ++ + ++++ ++LQ+WDTAGQE FRS+ S
Sbjct: 15 TGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDNKPIKLQIWDTAGQESFRSITRS 74
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R + A++VYDIT +F+ + W++D R S++ IML
Sbjct: 75 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANSNMTIML------------------ 116
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
+GNK DL+ +R VSTEEGER AKE ++F+ETSAK
Sbjct: 117 -----------------------IGNKCDLAHRRAVSTEEGERFAKENGLVFMETSAKTA 153
Query: 225 YNVK 228
+NV+
Sbjct: 154 HNVE 157
>gi|355714960|gb|AES05177.1| RAB5A, member RAS oncoprotein family [Mustela putorius furo]
Length = 213
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 14 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEFQES 50
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 51 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 110
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 111 KNWVKELQRQASPNIVIALSG--------------------------------------- 131
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 132 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI 172
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 68 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 127
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 128 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 181
>gi|417408714|gb|JAA50897.1| Putative rab subfamily protein of small gtpase, partial [Desmodus
rotundus]
Length = 214
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 14 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEFQES 50
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 51 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 110
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 111 KNWVKELQRQASPNIVIALSG--------------------------------------- 131
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 132 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI 172
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 68 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 127
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 128 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 181
>gi|440896494|gb|ELR48410.1| Ras-related protein Rab-5A, partial [Bos grunniens mutus]
Length = 218
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 18 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 54
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 55 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 114
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 115 KNWVKELQRQASPNIVIALSG--------------------------------------- 135
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 136 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI 176
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 72 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 131
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 132 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 185
>gi|114585675|ref|XP_516319.2| PREDICTED: ras-related protein Rab-5A [Pan troglodytes]
gi|397511743|ref|XP_003826226.1| PREDICTED: ras-related protein Rab-5A isoform 1 [Pan paniscus]
gi|410210354|gb|JAA02396.1| RAB5A, member RAS oncogene family [Pan troglodytes]
gi|410263980|gb|JAA19956.1| RAB5A, member RAS oncogene family [Pan troglodytes]
gi|410302036|gb|JAA29618.1| RAB5A, member RAS oncogene family [Pan troglodytes]
gi|410335267|gb|JAA36580.1| RAB5A, member RAS oncogene family [Pan troglodytes]
Length = 216
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 15 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEFQES 51
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 52 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 111
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 112 KNWVKELQRQASPNIVIALSG--------------------------------------- 132
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 133 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI 173
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 182
>gi|240849221|ref|NP_001155353.1| ras-related protein Rab-5A [Ovis aries]
gi|238566829|gb|ACR46638.1| RAB5A [Ovis aries]
Length = 215
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 15 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 51
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 52 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 111
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 112 KNWVKELQRQASPNIVIALSG--------------------------------------- 132
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 133 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI 173
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 182
>gi|55670031|pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
gi|55670032|pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
gi|55670033|pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
gi|55670034|pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
gi|55670035|pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 111/227 (48%), Gaps = 64/227 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 2 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 38
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 39 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 98
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 99 KNWVKELQRQASPNIVIALSG--------------------------------------- 119
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NK DL++KR V +E + A + +++F+ETSAK NV ++ + +
Sbjct: 120 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 164
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 56 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 115
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 116 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 169
>gi|432883290|ref|XP_004074250.1| PREDICTED: ras-related protein Rab-5A-like [Oryzias latipes]
Length = 216
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALAG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V ++ + A + +++F+ETSAK NV ++
Sbjct: 134 --NKADLANKRAVEFQDAQSYADDNSLLFMETSAKTSMNVNEI 174
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V ++ + A + +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALAGNKADLANKRAVEFQDAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKRLP 183
>gi|115495947|ref|NP_001069654.1| ras-related protein Rab-5A [Bos taurus]
gi|344288083|ref|XP_003415780.1| PREDICTED: ras-related protein Rab-5A-like [Loxodonta africana]
gi|122144200|sp|Q0IIG7.1|RAB5A_BOVIN RecName: Full=Ras-related protein Rab-5A
gi|113911876|gb|AAI22652.1| RAB5A, member RAS oncogene family [Bos taurus]
Length = 215
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 15 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 51
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 52 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 111
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 112 KNWVKELQRQASPNIVIALSG--------------------------------------- 132
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 133 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI 173
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 182
>gi|417397259|gb|JAA45663.1| Putative rab subfamily protein of small gtpase [Desmodus rotundus]
Length = 215
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 15 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 51
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 52 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 111
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 112 KNWVKELQRQASPNIVIALSG--------------------------------------- 132
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 133 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI 173
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 75/114 (65%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F + LP
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIGKKLP 182
>gi|291399699|ref|XP_002716250.1| PREDICTED: RAB5A, member RAS oncogene family [Oryctolagus
cuniculus]
Length = 215
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 15 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 51
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 52 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 111
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 112 KNWVKELQRQASPNIVIALSG--------------------------------------- 132
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 133 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI 173
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 182
>gi|115450775|ref|NP_001048988.1| Os03g0151900 [Oryza sativa Japonica Group]
gi|11992279|gb|AAG42497.1|AF323991_1 small GTP-binding protein RAB5B [Oryza sativa Indica Group]
gi|108706223|gb|ABF94018.1| Ras-related protein RHN1, putative, expressed [Oryza sativa
Japonica Group]
gi|113547459|dbj|BAF10902.1| Os03g0151900 [Oryza sativa Japonica Group]
gi|215740565|dbj|BAG97221.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768306|dbj|BAH00535.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218192105|gb|EEC74532.1| hypothetical protein OsI_10050 [Oryza sativa Indica Group]
gi|222624202|gb|EEE58334.1| hypothetical protein OsJ_09439 [Oryza sativa Japonica Group]
Length = 199
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 99/185 (53%), Gaps = 42/185 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSY 105
VGK+ ++ RF+ FD T + T+G FLS+T+ LED T V+ ++WDTAGQER+ +L P Y
Sbjct: 42 VGKSCIVLRFVRGQFDPTSKVTVGASFLSQTLALEDSTIVKFEIWDTAGQERYAALAPLY 101
Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
R + AVVVYDIT+ SF + W+ +++ D+I++L
Sbjct: 102 YRGAAAAVVVYDITSPESFSKAQYWVKELQKHGSPDIIMVL------------------- 142
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 225
VGNK DL + R VS++E + A++ N++FIETSAK
Sbjct: 143 ----------------------VGNKADLHENRHVSSQEAQEYAEKNNMVFIETSAKTAD 180
Query: 226 NVKQV 230
N+ QV
Sbjct: 181 NINQV 185
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 78/114 (68%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ +L P Y R + AVVVYDIT+ SF + W+ +++ D+I+
Sbjct: 81 VKFEIWDTAGQERYAALAPLYYRGAAAAVVVYDITSPESFSKAQYWVKELQKHGSPDIIM 140
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
+LVGNK DL + R VS++E + A++ N++FIETSAK N+ Q+F +A LP
Sbjct: 141 VLVGNKADLHENRHVSSQEAQEYAEKNNMVFIETSAKTADNINQVFEEIAKRLP 194
>gi|242808404|ref|XP_002485155.1| RAB GTPase Ypt5, putative [Talaromyces stipitatus ATCC 10500]
gi|218715780|gb|EED15202.1| RAB GTPase Ypt5, putative [Talaromyces stipitatus ATCC 10500]
Length = 218
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 120/252 (47%), Gaps = 76/252 (30%)
Query: 5 GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT 64
G G +FKLV LGE +VGK+SL+ RF+ D FD+
Sbjct: 9 GRPGARFAQFKLVLLGESAVGKSSLVL-----------------------RFVKDQFDDY 45
Query: 65 YQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
++TIG FL++T+ L E+ TV+ ++WDTAGQER++SL P Y R++ AVVVYDIT + S
Sbjct: 46 RESTIGAAFLTQTISLDENTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQSAS 105
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
+ W+ +++ + ++II
Sbjct: 106 LDKAKSWVKELQRQANENIII--------------------------------------- 126
Query: 184 IIMLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV------RLQ 233
L GNK DL DKR ++T + E AKE ++F ETSAK NVK++ +L
Sbjct: 127 --ALAGNKLDLVTENPDKRAIATADAEAYAKEAGLLFFETSAKTTTNVKELFTAIAKKLP 184
Query: 234 LWDTAGQERFRS 245
L D AG R+
Sbjct: 185 L-DQAGPRNLRT 195
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 77/118 (65%), Gaps = 4/118 (3%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT + S + W+ +++ + ++II
Sbjct: 67 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQSASLDKAKSWVKELQRQANENIII 126
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL DKR ++T + E AKE ++F ETSAK NVK+LF +A LP
Sbjct: 127 ALAGNKLDLVTENPDKRAIATADAEAYAKEAGLLFFETSAKTTTNVKELFTAIAKKLP 184
>gi|178056558|ref|NP_001116652.1| ras-related protein Rab-5A [Sus scrofa]
gi|122131883|sp|Q06AU6.1|RAB5A_PIG RecName: Full=Ras-related protein Rab-5A
gi|115394760|gb|ABI97174.1| RAB5A [Sus scrofa]
Length = 215
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 15 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 51
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 52 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 111
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 112 KNWVKELQRQASPNIVIALSG--------------------------------------- 132
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 133 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI 173
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 182
>gi|431890611|gb|ELK01490.1| Ras-related protein Rab-5C [Pteropus alecto]
Length = 258
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 119/246 (48%), Gaps = 60/246 (24%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFM---YDSFD-- 62
GN + +FKLV LGE +VGK+SL+ RF+ F ++TI G +++ Y S D
Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGGAFLCLSQQKASEYQSPDAA 75
Query: 63 --------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
T + FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R
Sbjct: 76 VEMGGHGCSSSFLPGTITFPLTAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRG 135
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ A+VVYDITN ++F + W+ +++ + +++I L G
Sbjct: 136 AQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAG-------------------- 175
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
NK DL+ KR V +E + A + +++F+ETSAK NV
Sbjct: 176 ---------------------NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVN 214
Query: 229 QVRLQL 234
++ + +
Sbjct: 215 EIFMAI 220
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 82/138 (59%), Gaps = 15/138 (10%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 112 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 171
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP------ 343
L GNK DL+ KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 172 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQN 231
Query: 344 ---------GMDSTENKP 352
G+D EN P
Sbjct: 232 AAGAPGRNRGVDLQENNP 249
>gi|27066008|pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
gi|40889551|pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 111/227 (48%), Gaps = 64/227 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 1 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 37
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 38 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 97
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 98 KNWVKELQRQASPNIVIALSG--------------------------------------- 118
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NK DL++KR V +E + A + +++F+ETSAK NV ++ + +
Sbjct: 119 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 114
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168
>gi|67480015|ref|XP_655377.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
gi|13537437|dbj|BAB40673.1| small GTPase Rab5 [Entamoeba histolytica]
gi|56472508|gb|EAL49990.1| Rab family GTPase [Entamoeba histolytica HM-1:IMSS]
Length = 195
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
++ ++WDTAGQER+ SL P Y R S A+VVYDIT+ +SF Q KWID++R G++ II
Sbjct: 57 IKFEIWDTAGQERYHSLTPMYYRGSNAALVVYDITSDSSFIQAKKWIDELRGS-GNEAII 115
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
LVGNK DL + R ++ EE E A+ L++ +IETSAKA NV +LF ++A LP
Sbjct: 116 FLVGNKCDLDNSRVITKEEAEGYARSLSIDYIETSAKANINVNELFDQIARKLP 169
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 105/202 (51%), Gaps = 49/202 (24%)
Query: 40 NTYQATIV-------GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92
NTYQ IV GK+S++ R D + + TIG FL+KT+ ++ T++ ++WDT
Sbjct: 5 NTYQFKIVLLGDSSVGKSSIVLRVCKDEYKEFQENTIGAAFLTKTLIVDGETIKFEIWDT 64
Query: 93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIET 152
AGQER+ SL P Y R S A+VVYDIT+ +SF Q KWID++R G++ II L
Sbjct: 65 AGQERYHSLTPMYYRGSNAALVVYDITSDSSFIQAKKWIDELRGS-GNEAIIFL------ 117
Query: 153 NFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL 212
VGNK DL + R ++ EE E A+ L
Sbjct: 118 -----------------------------------VGNKCDLDNSRVITKEEAEGYARSL 142
Query: 213 NVMFIETSAKAGYNVKQVRLQL 234
++ +IETSAKA NV ++ Q+
Sbjct: 143 SIDYIETSAKANINVNELFDQI 164
>gi|407916415|gb|EKG09787.1| Ras GTPase [Macrophomina phaseolina MS6]
Length = 219
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 120/249 (48%), Gaps = 76/249 (30%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G+ +FKLV LGE +VGK+SL+ RF+ D FD+ ++
Sbjct: 13 GSRFAQFKLVLLGESAVGKSSLVL-----------------------RFVKDQFDDYRES 49
Query: 68 TIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 126
TIG FL++T+ L+D T V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S +
Sbjct: 50 TIGAAFLTQTIALDDNTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDK 109
Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
W+ +++ + +++I
Sbjct: 110 AKAWVKELQRQANENIVI-----------------------------------------A 128
Query: 187 LVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV------RLQLWD 236
L GNK DL DKR + + E+ A+E ++F ETSAK NV+++ +L L D
Sbjct: 129 LAGNKLDLVTENPDKRAIPAADAEQYAREAGLLFFETSAKTAENVRELFTAIAKKLPL-D 187
Query: 237 TAGQERFRS 245
AG RS
Sbjct: 188 QAGPRNIRS 196
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 77/118 (65%), Gaps = 4/118 (3%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S + W+ +++ + +++I
Sbjct: 68 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKAWVKELQRQANENIVI 127
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL DKR + + E+ A+E ++F ETSAK NV++LF +A LP
Sbjct: 128 ALAGNKLDLVTENPDKRAIPAADAEQYAREAGLLFFETSAKTAENVRELFTAIAKKLP 185
>gi|348562462|ref|XP_003467029.1| PREDICTED: ras-related protein Rab-5C-like [Cavia porcellus]
Length = 216
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 110/223 (49%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEYQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFLRA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L
Sbjct: 113 KNWVKELQRQASPNIVIAL----------------------------------------- 131
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNK DL+ KR V ++ + A++ +++F+ETSAK NV +V
Sbjct: 132 AGNKADLASKRAVEFQDAQAYAEDNSLLFMETSAKTAMNVNEV 174
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 77/114 (67%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFLRAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL+ KR V ++ + A++ +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALAGNKADLASKRAVEFQDAQAYAEDNSLLFMETSAKTAMNVNEVFMAIAKKLP 183
>gi|154331448|ref|XP_001561542.1| small GTP binding protein rab6-like protein, partial [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134058860|emb|CAM41428.1| small GTP binding protein rab6-like protein, partial [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 118
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/120 (55%), Positives = 79/120 (65%), Gaps = 24/120 (20%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+ K KLV LG+QSVGKTS++ TRFMYD+FD YQ TIG
Sbjct: 22 MLKHKLVLLGDQSVGKTSIL-----------------------TRFMYDTFDQQYQPTIG 58
Query: 71 IDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
IDF SKT++LED R VRL LWDTAGQERF SLIPSYIR+S+ VVVYDIT+ ++F K
Sbjct: 59 IDFFSKTIHLEDDRDVRLHLWDTAGQERFHSLIPSYIRNSSATVVVYDITSRSTFFNAFK 118
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 37/47 (78%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 274
+ VRL LWDTAGQERF SLIPSYIR+S+ VVVYDIT+ ++F K
Sbjct: 72 RDVRLHLWDTAGQERFHSLIPSYIRNSSATVVVYDITSRSTFFNAFK 118
>gi|226498408|ref|NP_001147694.1| ras-related protein RHN1 [Zea mays]
gi|195613140|gb|ACG28400.1| ras-related protein RHN1 [Zea mays]
gi|195652993|gb|ACG45964.1| ras-related protein RHN1 [Zea mays]
gi|238006674|gb|ACR34372.1| unknown [Zea mays]
Length = 203
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 106/227 (46%), Gaps = 64/227 (28%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
+ +FGN +R KLV LG+ VG GK+SL+ RF+ F
Sbjct: 2 AANFGNKIRNAKLVLLGD--VG---------------------AGKSSLVLRFVKGQFVE 38
Query: 64 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
++TIG F S+T+ + D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN S
Sbjct: 39 FQESTIGAAFFSQTLAVNDETVKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITNPAS 98
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
F + KW+ +++ + + I+
Sbjct: 99 FTRAKKWVQELQAQGNPNTIV--------------------------------------- 119
Query: 184 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
L GNK D+ D R V+ EE + A+E + F+ETSAK NV +
Sbjct: 120 --ALAGNKVDMLDARHVAVEEAKTYAQENGLFFMETSAKTAINVNDI 164
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N + V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + KW+ +++ +
Sbjct: 56 NDETVKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITNPASFTRAKKWVQELQAQGNP 115
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
+ I+ L GNK D+ D R V+ EE + A+E + F+ETSAK NV +F +A L +
Sbjct: 116 NTIVALAGNKVDMLDARHVAVEEAKTYAQENGLFFMETSAKTAINVNDIFYEIAKRL--L 173
Query: 346 DSTENKPPE 354
E P+
Sbjct: 174 QGQEAPSPQ 182
>gi|390478683|ref|XP_003735553.1| PREDICTED: ras-related protein Rab-8A isoform 2 [Callithrix
jacchus]
Length = 207
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA++
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIE------------------------EHASA-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAKA N
Sbjct: 113 ---------------DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
V+ L
Sbjct: 158 VENAFFTL 165
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 76/112 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E GE+ A + + F+ETSAKA NV+ F +A
Sbjct: 115 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166
>gi|410950754|ref|XP_003982068.1| PREDICTED: ras-related protein Rab-8A [Felis catus]
Length = 207
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA++
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIE------------------------EHASA-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAKA N
Sbjct: 113 ---------------DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
V+ L
Sbjct: 158 VENAFFTL 165
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG-MD 346
M++GNK D++DKRQVS E GE+ A + + F+ETSAKA NV+ F +A + MD
Sbjct: 115 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD 174
Query: 347 ST-ENKPPE 354
E P+
Sbjct: 175 KKLEGNSPQ 183
>gi|432092263|gb|ELK24887.1| Ras-related protein Rab-8B [Myotis davidii]
Length = 207
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 102/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHAS--- 111
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ N
Sbjct: 112 --------------LDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTN 157
Query: 227 VKQVRLQL 234
V++ L
Sbjct: 158 VEEAFFTL 165
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 76/112 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ DV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASLDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ NV++ F +A
Sbjct: 115 ERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLA 166
>gi|431921946|gb|ELK19119.1| Ras-related protein Rab-8A [Pteropus alecto]
Length = 207
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA++
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIE------------------------EHASA-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAKA N
Sbjct: 113 ---------------DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
V+ L
Sbjct: 158 VENAFFTL 165
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 76/112 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E GE+ A + + F+ETSAKA NV+ F +A
Sbjct: 115 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166
>gi|16933567|ref|NP_005361.2| ras-related protein Rab-8A [Homo sapiens]
gi|55741707|ref|NP_001003152.1| ras-related protein Rab-8A [Canis lupus familiaris]
gi|345090993|ref|NP_001230731.1| RAB8A, member RAS oncogene family [Sus scrofa]
gi|194223710|ref|XP_001914834.1| PREDICTED: ras-related protein Rab-8A-like [Equus caballus]
gi|402904630|ref|XP_003915145.1| PREDICTED: ras-related protein Rab-8A isoform 1 [Papio anubis]
gi|403303362|ref|XP_003942297.1| PREDICTED: ras-related protein Rab-8A isoform 1 [Saimiri
boliviensis boliviensis]
gi|426387629|ref|XP_004060266.1| PREDICTED: ras-related protein Rab-8A isoform 1 [Gorilla gorilla
gorilla]
gi|46577633|sp|P61007.1|RAB8A_CANFA RecName: Full=Ras-related protein Rab-8A; AltName: Full=Oncogene
c-mel; Flags: Precursor
gi|46810392|sp|P61006.1|RAB8A_HUMAN RecName: Full=Ras-related protein Rab-8A; AltName: Full=Oncogene
c-mel; Flags: Precursor
gi|75076100|sp|Q4R5P1.1|RAB8A_MACFA RecName: Full=Ras-related protein Rab-8A; Flags: Precursor
gi|20379062|gb|AAM21091.1|AF498943_1 small GTP binding protein RAB8 [Homo sapiens]
gi|452318|emb|CAA40065.1| rab8 small GTP binding protein [Homo sapiens]
gi|6006436|emb|CAB56776.1| rab8 [Canis lupus familiaris]
gi|12804237|gb|AAH02977.1| RAB8A, member RAS oncogene family [Homo sapiens]
gi|30583207|gb|AAP35848.1| mel transforming oncogene (derived from cell line NK14)- RAB8
homolog [Homo sapiens]
gi|49168650|emb|CAG38820.1| RAB8A [Homo sapiens]
gi|49457542|emb|CAG47070.1| RAB8A [Homo sapiens]
gi|60655631|gb|AAX32379.1| RAB8A [synthetic construct]
gi|67970483|dbj|BAE01584.1| unnamed protein product [Macaca fascicularis]
gi|119604932|gb|EAW84526.1| RAB8A, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|119604933|gb|EAW84527.1| RAB8A, member RAS oncogene family, isoform CRA_a [Homo sapiens]
gi|123983416|gb|ABM83449.1| RAB8A, member RAS oncogene family [synthetic construct]
gi|123998119|gb|ABM86661.1| RAB8A, member RAS oncogene family [synthetic construct]
gi|355703272|gb|EHH29763.1| Oncogene c-mel [Macaca mulatta]
gi|355755572|gb|EHH59319.1| Oncogene c-mel [Macaca fascicularis]
gi|380785255|gb|AFE64503.1| ras-related protein Rab-8A [Macaca mulatta]
gi|383409677|gb|AFH28052.1| ras-related protein Rab-8A [Macaca mulatta]
gi|384944060|gb|AFI35635.1| ras-related protein Rab-8A [Macaca mulatta]
gi|740474|prf||2005309A rab8 GTPase
Length = 207
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA++
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIE------------------------EHASA-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAKA N
Sbjct: 113 ---------------DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
V+ L
Sbjct: 158 VENAFFTL 165
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG-MD 346
M++GNK D++DKRQVS E GE+ A + + F+ETSAKA NV+ F +A + MD
Sbjct: 115 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD 174
Query: 347 ST-ENKPPE 354
E P+
Sbjct: 175 KKLEGNSPQ 183
>gi|407043236|gb|EKE41833.1| Rab family GTPase [Entamoeba nuttalli P19]
Length = 149
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 81/126 (64%), Gaps = 6/126 (4%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQER+RSLIPSYIRDS+ AV+VYDI + SF KWI+DVR++ ++
Sbjct: 6 KSIQLQIWDTAGQERYRSLIPSYIRDSSAAVIVYDINDRQSFESVDKWIEDVRSKEKGEI 65
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+ LVGNK DL R+V+ +E K + M ETSAK N+ +LF + L ++
Sbjct: 66 FLFLVGNKLDLG-HREVTQKEALAKGQNYQCMCFETSAKTNINITELFNAITEKLSTLE- 123
Query: 348 TENKPP 353
PP
Sbjct: 124 ----PP 125
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 78/153 (50%), Gaps = 42/153 (27%)
Query: 78 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE 137
M ++++++LQ+WDTAGQER+RSLIPSYIRDS+ AV+VYDI + SF KWI+DVR++
Sbjct: 1 MTFQNKSIQLQIWDTAGQERYRSLIPSYIRDSSAAVIVYDINDRQSFESVDKWIEDVRSK 60
Query: 138 RGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 197
++ + L VGNK DL
Sbjct: 61 EKGEIFLFL-----------------------------------------VGNKLDLG-H 78
Query: 198 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
R+V+ +E K + M ETSAK N+ ++
Sbjct: 79 REVTQKEALAKGQNYQCMCFETSAKTNINITEL 111
>gi|390339812|ref|XP_003725089.1| PREDICTED: ras-related protein Rab-10 isoform 1 [Strongylocentrotus
purpuratus]
Length = 201
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 100/188 (53%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F T+ +TIGIDF KT+ L + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCLLFRFSDDTFSTTFISTIGIDFKIKTVELNGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDIT +F +KW+ +++ HAN
Sbjct: 80 RGAMGIMLVYDITQEKTFDNIAKWLRNIQ------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV ML+GNK D+ DKR ++ + GE AKE + F+ETSAKA N
Sbjct: 113 --------------EDVEKMLLGNKCDMDDKRMINKDRGETIAKENGIKFMETSAKANIN 158
Query: 227 VKQVRLQL 234
V+Q + L
Sbjct: 159 VEQAFMTL 166
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 77/115 (66%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N K+++LQ+WDTAGQERF ++ SY R + ++VYDIT +F +KW+ +++
Sbjct: 54 NGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITQEKTFDNIAKWLRNIQEHANE 113
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA 340
DV ML+GNK D+ DKR ++ + GE AKE + F+ETSAKA NV+Q F +AA
Sbjct: 114 DVEKMLLGNKCDMDDKRMINKDRGETIAKENGIKFMETSAKANINVEQAFMTLAA 168
>gi|332018217|gb|EGI58822.1| Ras-related protein Rab-26 [Acromyrmex echinatior]
Length = 286
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 102/215 (47%), Gaps = 63/215 (29%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
FK++ LG+ VGKT L+TRF F Y T+GIDF
Sbjct: 89 FKVMLLGDSGVGKTCLLTRFRDGRF----------------------LSGNYITTVGIDF 126
Query: 74 LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
+K + ++D ++LQ+WDTAGQERFRS+ +Y RD+ +++YD+TN S+ W+ +
Sbjct: 127 RNKVVTVDDTPIKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKTSYDNIRAWLSE 186
Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
+R DV+IM L+GNK+D
Sbjct: 187 IREHANEDVVIM-----------------------------------------LLGNKSD 205
Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
+R V E+GER A+E V F+ETSAK G NV+
Sbjct: 206 CGTERAVKREDGERLAQEYKVPFMETSAKTGLNVE 240
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 76/113 (67%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
++LQ+WDTAGQERFRS+ +Y RD+ +++YD+TN S+ W+ ++R DV+I
Sbjct: 138 IKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKTSYDNIRAWLSEIREHANEDVVI 197
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
ML+GNK+D +R V E+GER A+E V F+ETSAK G NV+ F VA L
Sbjct: 198 MLLGNKSDCGTERAVKREDGERLAQEYKVPFMETSAKTGLNVELAFLAVAREL 250
>gi|218511593|gb|ACK77788.1| RAB8A [Cyprinus carpio]
Length = 207
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 104/188 (55%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA++
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHASA-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D+++KRQVS + GE+ A E + F+ETSAKA N
Sbjct: 113 ---------------DVEKMILGNKCDINEKRQVSKDRGEKLALEYGIKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
V+ L L
Sbjct: 158 VENSFLTL 165
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 76/112 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D+++KRQVS + GE+ A E + F+ETSAKA NV+ F +A
Sbjct: 115 EKMILGNKCDINEKRQVSKDRGEKLALEYGIKFMETSAKANINVENSFLTLA 166
>gi|30585389|gb|AAP36967.1| Homo sapiens mel transforming oncogene (derived from cell line
NK14)- RAB8 homolog [synthetic construct]
gi|61373064|gb|AAX43969.1| RAB8A member RAS oncogene family [synthetic construct]
gi|61373066|gb|AAX43970.1| RAB8A member RAS oncogene family [synthetic construct]
Length = 208
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA++
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIE------------------------EHASA-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAKA N
Sbjct: 113 ---------------DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
V+ L
Sbjct: 158 VENAFFTL 165
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG-MD 346
M++GNK D++DKRQVS E GE+ A + + F+ETSAKA NV+ F +A + MD
Sbjct: 115 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD 174
Query: 347 ST-ENKPPE 354
E P+
Sbjct: 175 KKLEGNSPQ 183
>gi|49522647|gb|AAH71176.1| Rab8a protein, partial [Rattus norvegicus]
Length = 206
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 18 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 77
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA++
Sbjct: 78 RGAMGIMLVYDITNEKSFDNIRNWIRNIE------------------------EHASA-- 111
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAKA N
Sbjct: 112 ---------------DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 156
Query: 227 VKQVRLQL 234
V+ L
Sbjct: 157 VENAFFTL 164
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 54 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 113
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG-MD 346
M++GNK D++DKRQVS E GE+ A + + F+ETSAKA NV+ F +A + MD
Sbjct: 114 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD 173
Query: 347 ST-ENKPPE 354
E P+
Sbjct: 174 KKLEGNSPQ 182
>gi|393911208|gb|EJD76212.1| hypothetical protein LOAG_16781 [Loa loa]
Length = 292
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 101/183 (55%), Gaps = 41/183 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF DSF+N++ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 102 VGKTCVLFRFSDDSFNNSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 161
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+S
Sbjct: 162 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHASS-- 195
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D+ ++RQVS E GE+ A E F+ETSAKA N
Sbjct: 196 ---------------DVDRMIIGNKCDVEERRQVSRERGEQLAIEYGTKFMETSAKANIN 240
Query: 227 VKQ 229
V++
Sbjct: 241 VEE 243
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 75/112 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 138 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 197
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D+ ++RQVS E GE+ A E F+ETSAKA NV++ F +A
Sbjct: 198 DRMIIGNKCDVEERRQVSRERGEQLAIEYGTKFMETSAKANINVEEAFFTLA 249
>gi|225709362|gb|ACO10527.1| Ras-related protein Rab-10 [Caligus rogercresseyi]
Length = 198
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 108/208 (51%), Gaps = 46/208 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F+ T+ +TIGIDF KT L + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCILFRFSEDTFNTTFISTIGIDFKIKTFELRGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R++ ++VYD+TN SF +KW+ +++ HA
Sbjct: 80 RNAMGIMLVYDVTNPKSFDNIAKWLQNIQ------------------------EHA---- 111
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+V M++GNK D+ DKR +S E+GE ++E + F+ETSAK N
Sbjct: 112 -------------AEEVDKMILGNKCDMEDKRVISKEKGEAISREYGIRFLETSAKTNVN 158
Query: 227 VKQVRLQLWD-----TAGQERFRSLIPS 249
+++ + L + T G E R +P
Sbjct: 159 IERAFMDLAESILERTPGVEEPRPSLPP 186
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 86/133 (64%), Gaps = 5/133 (3%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R++ ++VYD+TN SF +KW+ +++ +V
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRNAMGIMLVYDVTNPKSFDNIAKWLQNIQEHAAEEV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL----P 343
M++GNK D+ DKR +S E+GE ++E + F+ETSAK N+++ F +A ++ P
Sbjct: 116 DKMILGNKCDMEDKRVISKEKGEAISREYGIRFLETSAKTNVNIERAFMDLAESILERTP 175
Query: 344 GMDSTENK-PPED 355
G++ PP +
Sbjct: 176 GVEEPRPSLPPPN 188
>gi|38372905|ref|NP_075615.2| ras-related protein Rab-8A [Mus musculus]
gi|162287395|ref|NP_446450.2| ras-related protein Rab-8A [Rattus norvegicus]
gi|354473828|ref|XP_003499134.1| PREDICTED: ras-related protein Rab-8A-like [Cricetulus griseus]
gi|82592519|sp|P55258.2|RAB8A_MOUSE RecName: Full=Ras-related protein Rab-8A; AltName: Full=Oncogene
c-mel; Flags: Precursor
gi|82592520|sp|P35280.2|RAB8A_RAT RecName: Full=Ras-related protein Rab-8A; Flags: Precursor
gi|18043409|gb|AAH19990.1| RAB8A, member RAS oncogene family [Mus musculus]
gi|26344994|dbj|BAC36146.1| unnamed protein product [Mus musculus]
gi|26347909|dbj|BAC37603.1| unnamed protein product [Mus musculus]
gi|26348727|dbj|BAC38003.1| unnamed protein product [Mus musculus]
gi|77748034|gb|AAI05864.1| Rab8a protein [Rattus norvegicus]
gi|112292969|dbj|BAF02862.1| Rab8A [Mus musculus]
gi|148678837|gb|EDL10784.1| RAB8A, member RAS oncogene family, isoform CRA_a [Mus musculus]
gi|149036165|gb|EDL90831.1| RAB8A, member RAS oncogene family, isoform CRA_a [Rattus
norvegicus]
gi|338855122|gb|AEJ31940.1| RAB8 [Rattus norvegicus]
Length = 207
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA++
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIE------------------------EHASA-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAKA N
Sbjct: 113 ---------------DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
V+ L
Sbjct: 158 VENAFFTL 165
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG-MD 346
M++GNK D++DKRQVS E GE+ A + + F+ETSAKA NV+ F +A + MD
Sbjct: 115 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD 174
Query: 347 ST-ENKPPE 354
E P+
Sbjct: 175 KKLEGNSPQ 183
>gi|347841938|emb|CCD56510.1| similar to ras-related protein rab-5a [Botryotinia fuckeliana]
Length = 221
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 119/247 (48%), Gaps = 76/247 (30%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+FKLV LGE +VGK+SL+ RF+ D FD+ ++TIG
Sbjct: 18 QFKLVLLGESAVGKSSLVL-----------------------RFVKDQFDDYRESTIGAA 54
Query: 73 FLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
FL++T+ L E+ TV+ ++WDTAGQER++SL P Y R++ AVVVYDIT A S + W+
Sbjct: 55 FLTQTISLDENTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQAASLDKAKSWV 114
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
+++ + ++II L GNK
Sbjct: 115 KELQRQANENIII-----------------------------------------ALAGNK 133
Query: 192 TDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV------RLQLWDTAGQE 241
DL DKR ++TE+ AKE ++F ETSAK NV+++ +L L D AG
Sbjct: 134 LDLVTEQPDKRAITTEDASNYAKEAGLLFFETSAKTSENVRELFTAIAKKLPL-DQAGPR 192
Query: 242 RFRSLIP 248
R+ P
Sbjct: 193 NPRAGGP 199
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 77/118 (65%), Gaps = 4/118 (3%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A S + W+ +++ + ++II
Sbjct: 68 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQAASLDKAKSWVKELQRQANENIII 127
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL DKR ++TE+ AKE ++F ETSAK NV++LF +A LP
Sbjct: 128 ALAGNKLDLVTEQPDKRAITTEDASNYAKEAGLLFFETSAKTSENVRELFTAIAKKLP 185
>gi|182889996|gb|AAI65915.1| Rab5a protein [Danio rerio]
Length = 216
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 111/227 (48%), Gaps = 64/227 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 53 TIGAAFLTQTLCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALSG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NK DL++KR V ++ + A + +++F+ETSAK NV ++ + +
Sbjct: 134 --NKADLANKRAVDFQDAQSYADDNSLLFMETSAKTSMNVNEIFMAI 178
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 83/139 (59%), Gaps = 15/139 (10%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP------ 343
L GNK DL++KR V ++ + A + +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALSGNKADLANKRAVDFQDAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKSEPQA 189
Query: 344 ---------GMDSTENKPP 353
G+D TE PP
Sbjct: 190 AGANSGRSRGVDLTETAPP 208
>gi|410074687|ref|XP_003954926.1| hypothetical protein KAFR_0A03560 [Kazachstania africana CBS 2517]
gi|372461508|emb|CCF55791.1| hypothetical protein KAFR_0A03560 [Kazachstania africana CBS 2517]
Length = 207
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 115/227 (50%), Gaps = 71/227 (31%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+ +FKLV LG+ SVGK+S++ R F+ DSF++ ++TIG
Sbjct: 1 MLQFKLVLLGDSSVGKSSIVNR-----------------------FVKDSFEDLRESTIG 37
Query: 71 IDFLSKTMYLEDR----TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 126
FLS+T+ L D V+ ++WDTAGQER++SL P Y R++ A+VVYDIT +S ++
Sbjct: 38 AAFLSQTIKLNDNGKEVIVKFEIWDTAGQERYKSLAPMYYRNANAALVVYDITELDSLNK 97
Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
W+++++ + G D +++I
Sbjct: 98 AKTWVEELKNKVGDD----------------------------------------NIVIY 117
Query: 187 LVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 229
LVGNK D+ S KR VS E + AKE ++FIETSAK G N+K+
Sbjct: 118 LVGNKLDVCEKDSSKRLVSLEGAKEYAKEQGLLFIETSAKTGANIKE 164
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 91/145 (62%), Gaps = 7/145 (4%)
Query: 212 LNVMFIETSAKAGYNVKQV--RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 269
+ F+ + K N K+V + ++WDTAGQER++SL P Y R++ A+VVYDIT +S
Sbjct: 36 IGAAFLSQTIKLNDNGKEVIVKFEIWDTAGQERYKSLAPMYYRNANAALVVYDITELDSL 95
Query: 270 HQTSKWIDDVRTERGSD-VIIMLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETS 324
++ W+++++ + G D ++I LVGNK D+ S KR VS E + AKE ++FIETS
Sbjct: 96 NKAKTWVEELKNKVGDDNIVIYLVGNKLDVCEKDSSKRLVSLEGAKEYAKEQGLLFIETS 155
Query: 325 AKAGYNVKQLFRRVAAALPGMDSTE 349
AK G N+K+ F+ + L + TE
Sbjct: 156 AKTGANIKETFQEIGEKLYDIKKTE 180
>gi|334688829|ref|NP_001229300.1| RAB8A, member RAS oncogene family [Pan troglodytes]
gi|397484920|ref|XP_003813613.1| PREDICTED: ras-related protein Rab-8A isoform 1 [Pan paniscus]
gi|343961933|dbj|BAK62554.1| ras-related protein Rab-8A [Pan troglodytes]
gi|410222044|gb|JAA08241.1| RAB8A, member RAS oncogene family [Pan troglodytes]
gi|410266796|gb|JAA21364.1| RAB8A, member RAS oncogene family [Pan troglodytes]
gi|410342733|gb|JAA40313.1| RAB8A, member RAS oncogene family [Pan troglodytes]
Length = 207
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA++
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIE------------------------EHASA-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAKA N
Sbjct: 113 ---------------DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
V+ L
Sbjct: 158 VENAFFTL 165
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG-MD 346
M++GNK D++DKRQVS E GE+ A + + F+ETSAKA NV+ F +A + MD
Sbjct: 115 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD 174
Query: 347 ST-ENKPPE 354
E P+
Sbjct: 175 KKLEGNSPQ 183
>gi|225708202|gb|ACO09947.1| Ras-related protein Rab-5C [Osmerus mordax]
Length = 220
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 110/223 (49%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEYQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFTRA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L
Sbjct: 113 KNWVKELQRQASPNIVI-----------------------------------------AL 131
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNK D+++KR + +E + A + +++F+ETSAK NV ++
Sbjct: 132 AGNKADIANKRAIDQQEAQAYADDNSLLFMETSAKTAMNVNEI 174
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 77/114 (67%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFTRAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK D+++KR + +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALAGNKADIANKRAIDQQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLP 183
>gi|70994486|ref|XP_752022.1| RAB GTPase Ypt5 [Aspergillus fumigatus Af293]
gi|119500926|ref|XP_001267220.1| RAB GTPase Ypt5, putative [Neosartorya fischeri NRRL 181]
gi|66849656|gb|EAL89984.1| RAB GTPase Ypt5, putative [Aspergillus fumigatus Af293]
gi|119415385|gb|EAW25323.1| RAB GTPase Ypt5, putative [Neosartorya fischeri NRRL 181]
gi|159125065|gb|EDP50182.1| RAB GTPase Ypt5, putative [Aspergillus fumigatus A1163]
Length = 218
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 118/249 (47%), Gaps = 76/249 (30%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G +FKLV LGE +VGK+SL+ RF+ D FD+ ++
Sbjct: 12 GARFAQFKLVLLGESAVGKSSLVL-----------------------RFVKDQFDDYRES 48
Query: 68 TIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 126
TIG FL++T+ L E TV+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S +
Sbjct: 49 TIGAAFLTQTISLDESTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDK 108
Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
W+ +++ + +++I
Sbjct: 109 AKSWVKELQRQANENIVI-----------------------------------------A 127
Query: 187 LVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV------RLQLWD 236
L GNK DL DKR + T + E A+E ++F ETSAK NVK++ +L L D
Sbjct: 128 LAGNKLDLVTEHPDKRAIPTADAEAYAREAGLLFFETSAKTSTNVKELFAAIAKKLPL-D 186
Query: 237 TAGQERFRS 245
AG R+
Sbjct: 187 QAGPRNLRT 195
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 77/118 (65%), Gaps = 4/118 (3%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S + W+ +++ + +++I
Sbjct: 67 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKSWVKELQRQANENIVI 126
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL DKR + T + E A+E ++F ETSAK NVK+LF +A LP
Sbjct: 127 ALAGNKLDLVTEHPDKRAIPTADAEAYAREAGLLFFETSAKTSTNVKELFAAIAKKLP 184
>gi|41393127|ref|NP_958893.1| RAB5A, member RAS oncogene family, a [Danio rerio]
gi|28838709|gb|AAH47803.1| RAB5A, member RAS oncogene family [Danio rerio]
gi|39645921|gb|AAH63966.1| Rab5a protein [Danio rerio]
Length = 216
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEFQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 53 TIGAAFLTQTLCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALSG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V ++ + A + +++F+ETSAK NV ++
Sbjct: 134 --NKADLANKRAVDFQDAQSYADDNSLLFMETSAKTSMNVNEI 174
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V ++ + A + +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALSGNKADLANKRAVDFQDAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 183
>gi|2118463|pir||I78851 GTP-binding protein MEL - mouse
gi|234748|gb|AAB19682.1| RAS-related [Mus sp.]
Length = 206
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA++
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIE------------------------EHASA-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAKA N
Sbjct: 113 ---------------DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
V+ L
Sbjct: 158 VENAFFTL 165
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 76/112 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E GE+ A + + F+ETSAKA NV+ F +A
Sbjct: 115 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166
>gi|131848|sp|P22128.1|RAB8_DISOM RecName: Full=Ras-related protein Rab-8; AltName: Full=ORA2; Flags:
Precursor
gi|213119|gb|AAA49232.1| GTP-binding protein [Discopyge ommata]
Length = 210
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 102/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + + VYDITN SF WI ++ SDV
Sbjct: 79 RGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDV------------------------ 114
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
ER M++GNK D+++KRQVS E GE+ A + + F+ETSAK+ N
Sbjct: 115 -----------ER------MILGNKCDMNEKRQVSKERGEKLAIDYGIKFLETSAKSSIN 157
Query: 227 VKQVRLQL 234
V++ + L
Sbjct: 158 VEEAFITL 165
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 76/112 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + + VYDITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D+++KRQVS E GE+ A + + F+ETSAK+ NV++ F +A
Sbjct: 115 ERMILGNKCDMNEKRQVSKERGEKLAIDYGIKFLETSAKSSINVEEAFITLA 166
>gi|74152890|dbj|BAE27741.1| unnamed protein product [Mus musculus]
Length = 208
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA++
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIE------------------------EHASA-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAKA N
Sbjct: 113 ---------------DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
V+ L
Sbjct: 158 VENAFFTL 165
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG-MD 346
M++GNK D++DKRQVS E GE+ A + + F+ETSAKA NV+ F +A + MD
Sbjct: 115 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD 174
Query: 347 ST-ENKPPE 354
E P+
Sbjct: 175 KKLEGNSPQ 183
>gi|234746|gb|AAB19681.1| RAS-related protein MEL [Homo sapiens]
Length = 206
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA++
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIE------------------------EHASA-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAKA N
Sbjct: 113 ---------------DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
V+ L
Sbjct: 158 VENAFFTL 165
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 76/112 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E GE+ A + + F+ETSAKA NV+ F +A
Sbjct: 115 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166
>gi|327275534|ref|XP_003222528.1| PREDICTED: ras-related protein Rab-5C-like [Anolis carolinensis]
Length = 216
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 108/222 (48%), Gaps = 64/222 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEYQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 53 TIGAAFLTQTICLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNMDTFVRA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + S+++I L G
Sbjct: 113 KNWVKELQRQASSNIVIALAG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 229
NK DL KR V +E + A + +++F+ETSAK NV +
Sbjct: 134 --NKADLGSKRAVDFQEAQAYADDNSLLFMETSAKTAMNVNE 173
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 79/123 (64%), Gaps = 5/123 (4%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + S+++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNMDTFVRAKNWVKELQRQASSNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
L GNK DL KR V +E + A + +++F+ETSAK NV + F +A LP +
Sbjct: 130 ALAGNKADLGSKRAVDFQEAQAYADDNSLLFMETSAKTAMNVNETFMAIAKKLP-----K 184
Query: 350 NKP 352
N+P
Sbjct: 185 NEP 187
>gi|93279750|pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
gi|93279751|pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA++
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIE------------------------EHASA-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAKA N
Sbjct: 113 ---------------DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
V+ L
Sbjct: 158 VENAFFTL 165
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 76/112 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E GE+ A + + F+ETSAKA NV+ F +A
Sbjct: 115 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166
>gi|168034319|ref|XP_001769660.1| Rab5/RabF-family small GTPase [Physcomitrella patens subsp. patens]
gi|162679009|gb|EDQ65461.1| Rab5/RabF-family small GTPase [Physcomitrella patens subsp. patens]
Length = 201
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 80/118 (67%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N V+ ++WDTAGQER+ SL P Y R + A++VYDITN++SF + KW+ +++ +
Sbjct: 55 NETTVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNSDSFGRAKKWVQELQRQGNP 114
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
++++ L GNK DLS KR+V EEG+ A+E + F+ETSAK NV +LF +A LP
Sbjct: 115 NLVMALAGNKADLSAKRKVEAEEGQSYAEENGLFFMETSAKTAQNVNELFYEIARKLP 172
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 98/184 (53%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
GK+SL RF+ F + ++TIG FL++T+ + + TV+ ++WDTAGQER+ SL P Y
Sbjct: 21 AGKSSLSLRFVRGQFFDYQESTIGAAFLTQTLAVNETTVKFEIWDTAGQERYHSLAPMYY 80
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + A++VYDITN++SF + KW+ +++ + +++
Sbjct: 81 RGAAAAIIVYDITNSDSFGRAKKWVQELQRQGNPNLV----------------------- 117
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+ L GNK DLS KR+V EEG+ A+E + F+ETSAK N
Sbjct: 118 ------------------MALAGNKADLSAKRKVEAEEGQSYAEENGLFFMETSAKTAQN 159
Query: 227 VKQV 230
V ++
Sbjct: 160 VNEL 163
>gi|432917455|ref|XP_004079517.1| PREDICTED: ras-related protein Rab-8A-like [Oryzias latipes]
Length = 209
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 22 VGKTCILFRFSEDAFNSTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 81
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+S
Sbjct: 82 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHASS-- 115
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQV+ GE+ A E + F+ETSAK+ N
Sbjct: 116 ---------------DVEKMVLGNKCDINDKRQVTKMGGEKLALEYGIKFMETSAKSNIN 160
Query: 227 VKQVRLQL 234
V+ L L
Sbjct: 161 VENAFLTL 168
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 58 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP-GMD 346
M++GNK D++DKRQV+ GE+ A E + F+ETSAK+ NV+ F +A + MD
Sbjct: 118 EKMVLGNKCDINDKRQVTKMGGEKLALEYGIKFMETSAKSNINVENAFLTLARDIKTKMD 177
Query: 347 ST-ENKPPE 354
S E P+
Sbjct: 178 SKLEGNAPQ 186
>gi|327274891|ref|XP_003222209.1| PREDICTED: ras-related protein Rab-5A-like isoform 1 [Anolis
carolinensis]
gi|327274893|ref|XP_003222210.1| PREDICTED: ras-related protein Rab-5A-like isoform 2 [Anolis
carolinensis]
Length = 215
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 15 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEFQES 51
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 52 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 111
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 112 KNWVKELQRQASPNIVIALAG--------------------------------------- 132
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V ++ + A + +++F+ETSAK NV ++
Sbjct: 133 --NKADLANKRAVDFQDAQSYADDNSLLFMETSAKTSMNVNEI 173
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V ++ + A + +++F+ETSAK NV ++F +A LP
Sbjct: 129 ALAGNKADLANKRAVDFQDAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 182
>gi|289743331|gb|ADD20413.1| Rab protein 5 [Glossina morsitans morsitans]
Length = 222
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 110/231 (47%), Gaps = 64/231 (27%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
+G N +FKLV LGE + VGK+SL+ RF+ F
Sbjct: 22 NGTSQNKSCQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHE 58
Query: 64 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
++TIG FL++T+ +ED V+ ++WDTAGQER+ SL P Y R + A+VVYDI N +S
Sbjct: 59 YQESTIGAAFLTQTICIEDTVVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDIQNQDS 118
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
F + + W+ ++ + +++I
Sbjct: 119 FQRATTWVKELHKQASPNIVI--------------------------------------- 139
Query: 184 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
L GNK DLS+ R V EE ++ A+E ++F+ETSAK G NV + L +
Sbjct: 140 --ALAGNKADLSNIRVVEYEEAKQYAEENGLLFMETSAKTGMNVNDIFLAI 188
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 79/122 (64%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDI N +SF + + W+ ++ + +++I
Sbjct: 80 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDIQNQDSFQRATTWVKELHKQASPNIVI 139
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
L GNK DLS+ R V EE ++ A+E ++F+ETSAK G NV +F +A LP D
Sbjct: 140 ALAGNKADLSNIRVVEYEEAKQYAEENGLLFMETSAKTGMNVNDIFLAIAKKLPKNDGAN 199
Query: 350 NK 351
N+
Sbjct: 200 NQ 201
>gi|145257106|ref|XP_001401615.1| GTP-binding protein ypt5 [Aspergillus niger CBS 513.88]
gi|134058525|emb|CAL00734.1| unnamed protein product [Aspergillus niger]
gi|350632151|gb|EHA20519.1| hypothetical protein ASPNIDRAFT_54582 [Aspergillus niger ATCC 1015]
Length = 218
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 117/244 (47%), Gaps = 76/244 (31%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+FKLV LGE +VGK+SL+ RF+ D FD+ ++TIG
Sbjct: 17 QFKLVLLGESAVGKSSLVL-----------------------RFVKDQFDDYRESTIGAA 53
Query: 73 FLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
FL++T+ L E TV+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S + W+
Sbjct: 54 FLTQTISLDESTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKSWV 113
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
+++ + +++I L GNK
Sbjct: 114 KELQRQANENIVI-----------------------------------------ALAGNK 132
Query: 192 TDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV------RLQLWDTAGQE 241
DL DKR + T + E A+E ++F ETSAK NVK++ +L L D AG
Sbjct: 133 LDLVTESPDKRAIPTADAEAYAREAGLLFFETSAKTSSNVKELFTAIAKKLPL-DQAGPR 191
Query: 242 RFRS 245
R+
Sbjct: 192 NLRT 195
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 77/118 (65%), Gaps = 4/118 (3%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S + W+ +++ + +++I
Sbjct: 67 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKSWVKELQRQANENIVI 126
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL DKR + T + E A+E ++F ETSAK NVK+LF +A LP
Sbjct: 127 ALAGNKLDLVTESPDKRAIPTADAEAYAREAGLLFFETSAKTSSNVKELFTAIAKKLP 184
>gi|209156126|gb|ACI34295.1| Ras-related protein Rab-5C [Salmo salar]
Length = 220
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 110/223 (49%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFQEYQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNRDTFTRA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L
Sbjct: 113 KNWVKELQRQASPNIVIAL----------------------------------------- 131
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNK D+++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 132 AGNKADVANKRAVDLQEAQAYADDNSLLFMETSAKTAMNVNEI 174
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 77/114 (67%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNRDTFTRAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK D+++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALAGNKADVANKRAVDLQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLP 183
>gi|157428086|ref|NP_001098951.1| ras-related protein Rab-8A [Bos taurus]
gi|240849277|ref|NP_001155332.1| ras-related protein Rab-8A [Ovis aries]
gi|158513560|sp|A4FV54.1|RAB8A_BOVIN RecName: Full=Ras-related protein Rab-8A; Flags: Precursor
gi|133778133|gb|AAI23756.1| RAB8A protein [Bos taurus]
gi|238566720|gb|ACR46623.1| RAB8A [Ovis aries]
gi|296486043|tpg|DAA28156.1| TPA: ras-related protein Rab-8A [Bos taurus]
gi|385139591|gb|AFI41879.1| RAS oncogene protein [Capra hircus]
gi|440901306|gb|ELR52280.1| Ras-related protein Rab-8A [Bos grunniens mutus]
Length = 207
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 102/182 (56%), Gaps = 41/182 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA++
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIE------------------------EHASA-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAKA N
Sbjct: 113 ---------------DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157
Query: 227 VK 228
V+
Sbjct: 158 VE 159
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG-MD 346
M++GNK D++DKRQVS E GE+ A + + F+ETSAKA NV+ F +A + MD
Sbjct: 115 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFYTLARDIKAKMD 174
Query: 347 ST-ENKPPE 354
E P+
Sbjct: 175 KKLEGNSPQ 183
>gi|403167509|ref|XP_003327295.2| rab family protein [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375167062|gb|EFP82876.2| rab family protein [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 215
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 109/219 (49%), Gaps = 65/219 (29%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
P +FKLV LGE + VGK+SL+ RF+ + F ++TI
Sbjct: 12 PNYQFKLVLLGE-----------------------SAVGKSSLVLRFVQNDFQEYRESTI 48
Query: 70 GIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
G FL++T+ + E T++ ++WDTAGQER++SL P Y R++ AVVVYDIT++ S +
Sbjct: 49 GAAFLTQTVKINEQTTIKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITSSASLEKAK 108
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
WI +++ + + ++I L
Sbjct: 109 VWIRELQKQADAQIVI-----------------------------------------ALA 127
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 227
GNK DL ++RQV TEE +R A+E N++F ETSAK NV
Sbjct: 128 GNKADLEERRQVPTEEAQRFAEEENLLFFETSAKDSTNV 166
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 85/124 (68%), Gaps = 1/124 (0%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
++ ++WDTAGQER++SL P Y R++ AVVVYDIT++ S + WI +++ + + ++I
Sbjct: 65 IKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITSSASLEKAKVWIRELQKQADAQIVI 124
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
L GNK DL ++RQV TEE +R A+E N++F ETSAK NV +F +A LP +DS
Sbjct: 125 ALAGNKADLEERRQVPTEEAQRFAEEENLLFFETSAKDSTNVTDIFTAIAKKLP-LDSAA 183
Query: 350 NKPP 353
++ P
Sbjct: 184 SRGP 187
>gi|351712945|gb|EHB15864.1| Ras-related protein Rab-8A [Heterocephalus glaber]
Length = 207
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA++
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIE------------------------EHASA-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAKA N
Sbjct: 113 ---------------DVEKMILGNKCDVNDKRQVSRERGEKLALDYGIKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
V+ L
Sbjct: 158 VENAFFTL 165
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 76/112 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E GE+ A + + F+ETSAKA NV+ F +A
Sbjct: 115 EKMILGNKCDVNDKRQVSRERGEKLALDYGIKFMETSAKANINVENAFFTLA 166
>gi|27066009|pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
gi|27066010|pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
gi|27066012|pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 111/227 (48%), Gaps = 64/227 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 1 GNKICQFKLVLLGE-----------------------SPVGKSSLVLRFVKGQFHEFQES 37
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 38 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 97
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 98 KNWVKELQRQASPNIVIALSG--------------------------------------- 118
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NK DL++KR V +E + A + +++F+ETSAK NV ++ + +
Sbjct: 119 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 114
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168
>gi|56118881|ref|NP_001008068.1| RAB5A, member RAS oncogene family [Xenopus (Silurana) tropicalis]
gi|51703418|gb|AAH80959.1| RAB5A, member RAS oncogene family [Xenopus (Silurana) tropicalis]
gi|89267359|emb|CAJ83124.1| RAB5A, member RAS oncogene family [Xenopus (Silurana) tropicalis]
Length = 216
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 64/227 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALSG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NK DL+ KR V +E + A + +++F+ETSAK NV ++ + +
Sbjct: 134 --NKADLASKRAVDFQEAQAYADDNSLLFMETSAKTSVNVNEIFMAI 178
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 75/114 (65%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL+ KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALSGNKADLASKRAVDFQEAQAYADDNSLLFMETSAKTSVNVNEIFMAIAKKLP 183
>gi|348556994|ref|XP_003464305.1| PREDICTED: ras-related protein Rab-8A-like [Cavia porcellus]
Length = 207
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIE------------------------EHAS--- 111
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+DV M++GNK D++DKRQVS E GE+ A + + F+ETSAKA N
Sbjct: 112 --------------ADVEKMVLGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
V+ L
Sbjct: 158 VENAFFTL 165
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 76/112 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E GE+ A + + F+ETSAKA NV+ F +A
Sbjct: 115 EKMVLGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166
>gi|168054193|ref|XP_001779517.1| Rab5/RabF-family small GTPase [Physcomitrella patens subsp. patens]
gi|162669099|gb|EDQ55693.1| Rab5/RabF-family small GTPase [Physcomitrella patens subsp. patens]
Length = 201
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 80/118 (67%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N V+ ++WDTAGQER+ SL P Y R + A++VYDITN++SF + KW+ +++ +
Sbjct: 55 NETTVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNSDSFGRAKKWVQELQRQGNP 114
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
++++ L GNK DLS KR++ EEG+ A+E + F+ETSAK NV +LF +A LP
Sbjct: 115 NLVMALAGNKADLSSKRKIEAEEGQSYAEENGLFFMETSAKTSQNVNELFYEIARKLP 172
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 98/184 (53%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
GK+SL RF+ F + ++TIG FL++T+ + + TV+ ++WDTAGQER+ SL P Y
Sbjct: 21 AGKSSLALRFVKGQFFDYQESTIGAAFLTQTLAVNETTVKFEIWDTAGQERYHSLAPMYY 80
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + A++VYDITN++SF + KW+ +++ + +++
Sbjct: 81 RGAAAAIIVYDITNSDSFGRAKKWVQELQRQGNPNLV----------------------- 117
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+ L GNK DLS KR++ EEG+ A+E + F+ETSAK N
Sbjct: 118 ------------------MALAGNKADLSSKRKIEAEEGQSYAEENGLFFMETSAKTSQN 159
Query: 227 VKQV 230
V ++
Sbjct: 160 VNEL 163
>gi|321465918|gb|EFX76917.1| hypothetical protein DAPPUDRAFT_106641 [Daphnia pulex]
Length = 211
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA++
Sbjct: 79 RGAMGIMLVYDITNDKSFDNIKNWIRNIE------------------------EHASA-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS + GE+ A E + F+ETSAKA N
Sbjct: 113 ---------------DVEKMILGNKCDMNDKRQVSKDRGEQLAIEYGIKFMETSAKASIN 157
Query: 227 VKQVRLQL 234
V+ L
Sbjct: 158 VEDAFFTL 165
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 76/112 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNDKSFDNIKNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS + GE+ A E + F+ETSAKA NV+ F +A
Sbjct: 115 EKMILGNKCDMNDKRQVSKDRGEQLAIEYGIKFMETSAKASINVEDAFFTLA 166
>gi|184186107|ref|NP_001116975.1| GTPase homolog [Strongylocentrotus purpuratus]
Length = 207
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 104/188 (55%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+
Sbjct: 79 RGAMGIMLVYDITNQKSFDNIRNWIRNIE------------------------EHAS--- 111
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+DV M++GNK D+ D+R VS E+GE+ A E + F+ETSAKA N
Sbjct: 112 --------------ADVEKMILGNKCDMDDRRAVSKEKGEQLAIEYGIKFMETSAKASIN 157
Query: 227 VKQVRLQL 234
V++ + L
Sbjct: 158 VEEAFVTL 165
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 76/112 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNQKSFDNIRNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D+ D+R VS E+GE+ A E + F+ETSAKA NV++ F +A
Sbjct: 115 EKMILGNKCDMDDRRAVSKEKGEQLAIEYGIKFMETSAKASINVEEAFVTLA 166
>gi|55670041|pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
gi|55670042|pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
gi|55670043|pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
gi|55670044|pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 108/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 2 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 38
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 39 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARA 98
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 99 KNWVKELQRQASPNIVIALSG--------------------------------------- 119
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F ETSAK NV ++
Sbjct: 120 --NKADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEI 160
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 75/114 (65%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 56 VKFEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 115
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F ETSAK NV ++F +A LP
Sbjct: 116 ALSGNKADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLP 169
>gi|326634496|pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
gi|326634497|pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
gi|326634498|pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
gi|326634499|pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
gi|355333142|pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 17 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 76
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA++
Sbjct: 77 RGAMGIMLVYDITNEKSFDNIRNWIRNIE------------------------EHASA-- 110
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAKA N
Sbjct: 111 ---------------DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 155
Query: 227 VKQVRLQL 234
V+ L
Sbjct: 156 VENAFFTL 163
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 76/112 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 53 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E GE+ A + + F+ETSAKA NV+ F +A
Sbjct: 113 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 164
>gi|242038603|ref|XP_002466696.1| hypothetical protein SORBIDRAFT_01g012480 [Sorghum bicolor]
gi|241920550|gb|EER93694.1| hypothetical protein SORBIDRAFT_01g012480 [Sorghum bicolor]
Length = 203
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 106/227 (46%), Gaps = 64/227 (28%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
+ + GN +R KLV LG+ VG GK+SL+ RF+ F
Sbjct: 2 AANAGNKIRNAKLVLLGD--VG---------------------AGKSSLVLRFVKGQFVE 38
Query: 64 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
++TIG F S+T+ + D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN S
Sbjct: 39 FQESTIGAAFFSQTLAVNDETVKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITNPAS 98
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
F + KW+ +++ + + I+
Sbjct: 99 FTRAKKWVQELQAQGNPNTIV--------------------------------------- 119
Query: 184 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
L GNK D+ D RQV EE + A+E + F+ETSAK+ NV +
Sbjct: 120 --ALAGNKADMLDARQVPAEEAKTYAQENGLFFMETSAKSAINVNDI 164
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 75/117 (64%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N + V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + KW+ +++ +
Sbjct: 56 NDETVKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITNPASFTRAKKWVQELQAQGNP 115
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+ I+ L GNK D+ D RQV EE + A+E + F+ETSAK+ NV +F +A L
Sbjct: 116 NTIVALAGNKADMLDARQVPAEEAKTYAQENGLFFMETSAKSAINVNDIFYEIAKRL 172
>gi|195042188|ref|XP_001991383.1| GH12621 [Drosophila grimshawi]
gi|193901141|gb|EDW00008.1| GH12621 [Drosophila grimshawi]
Length = 204
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 108/200 (54%), Gaps = 46/200 (23%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F +T+ +TIGIDF KT+ L + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELRGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF KW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNEKSFENIVKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKR V+ E GE A+E ++ F+ETSAK+ N
Sbjct: 113 --------------EDVEKMILGNKCDMTDKRVVNKERGEAIAREHSIRFMETSAKSNIN 158
Query: 227 VKQVRLQLWD-----TAGQE 241
+++ +L + TAG+E
Sbjct: 159 IERAFCELAEAILDKTAGRE 178
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 85/131 (64%), Gaps = 6/131 (4%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITN SF KW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL----P 343
M++GNK D++DKR V+ E GE A+E ++ F+ETSAK+ N+++ F +A A+
Sbjct: 116 EKMILGNKCDMTDKRVVNKERGEAIAREHSIRFMETSAKSNINIERAFCELAEAILDKTA 175
Query: 344 GMDSTENKPPE 354
G +S EN PE
Sbjct: 176 GRESAEN--PE 184
>gi|27066019|pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 64/227 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE VGK+SL+ RF+ F ++
Sbjct: 1 GNKICQFKLVLLGESEVGKSSLVL-----------------------RFVKGQFHEFQES 37
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 38 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 97
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 98 KNWVKELQRQASPNIVIALSG--------------------------------------- 118
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NK DL++KR V +E + A + +++F+ETSAK NV ++ + +
Sbjct: 119 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 114
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168
>gi|27066018|pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 64/227 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE VGK+SL+ RF+ F ++
Sbjct: 1 GNKICQFKLVLLGESKVGKSSLVL-----------------------RFVKGQFHEFQES 37
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 38 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 97
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 98 KNWVKELQRQASPNIVIALSG--------------------------------------- 118
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NK DL++KR V +E + A + +++F+ETSAK NV ++ + +
Sbjct: 119 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 114
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168
>gi|156035889|ref|XP_001586056.1| hypothetical protein SS1G_13149 [Sclerotinia sclerotiorum 1980]
gi|154698553|gb|EDN98291.1| hypothetical protein SS1G_13149 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 221
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 120/247 (48%), Gaps = 76/247 (30%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+FKLV LGE +VGK+SL+ RF+ D FD+ ++TIG
Sbjct: 18 QFKLVLLGESAVGKSSLVL-----------------------RFVKDQFDDYRESTIGAA 54
Query: 73 FLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
FL++T+ L E+ TV+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S + W+
Sbjct: 55 FLTQTISLDENTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKSWV 114
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
+++ + ++II L GNK
Sbjct: 115 KELQRQANENIII-----------------------------------------ALAGNK 133
Query: 192 TDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV------RLQLWDTAGQE 241
DL DKR ++TE+ A+E ++F ETSAK NV+++ +L L D AG
Sbjct: 134 LDLVTEQPDKRAITTEDASNYAREAGLLFFETSAKTSENVRELFTAIAKKLPL-DQAGPR 192
Query: 242 RFRSLIP 248
R+ P
Sbjct: 193 NPRAGGP 199
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 78/118 (66%), Gaps = 4/118 (3%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S + W+ +++ + ++II
Sbjct: 68 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKSWVKELQRQANENIII 127
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL DKR ++TE+ A+E ++F ETSAK NV++LF +A LP
Sbjct: 128 ALAGNKLDLVTEQPDKRAITTEDASNYAREAGLLFFETSAKTSENVRELFTAIAKKLP 185
>gi|320584083|gb|EFW98295.1| GTP-binding protein [Ogataea parapolymorpha DL-1]
Length = 202
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 104/203 (51%), Gaps = 46/203 (22%)
Query: 37 SFDNTYQATIVG-----KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91
+FD T + +VG K+ L+ RF+ D F+ ++ TIGIDF KT+ L ++LQ+WD
Sbjct: 8 TFDKTMKLLLVGDSGVGKSCLLLRFVDDKFNPSFITTIGIDFKIKTIELNGSKIKLQVWD 67
Query: 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIE 151
TAGQERFR++ +Y R + ++VYD+ + NSF KW V
Sbjct: 68 TAGQERFRTITTAYYRGAMGIIIVYDVCDENSFESVKKWYQTVN---------------- 111
Query: 152 TNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE 211
HA Q + LVGNK D ++ RQVS ++GE A+E
Sbjct: 112 --------QHAKDEAQ-----------------LFLVGNKCDDTESRQVSEKQGELLAEE 146
Query: 212 LNVMFIETSAKAGYNVKQVRLQL 234
LNV F+E SAK+G NV +V +L
Sbjct: 147 LNVPFMEASAKSGLNVNEVFYKL 169
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 82/130 (63%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N +++LQ+WDTAGQERFR++ +Y R + ++VYD+ + NSF KW V
Sbjct: 57 NGSKIKLQVWDTAGQERFRTITTAYYRGAMGIIIVYDVCDENSFESVKKWYQTVNQHAKD 116
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
+ + LVGNK D ++ RQVS ++GE A+ELNV F+E SAK+G NV ++F ++A+ +
Sbjct: 117 EAQLFLVGNKCDDTESRQVSEKQGELLAEELNVPFMEASAKSGLNVNEVFYKLASLILEK 176
Query: 346 DSTENKPPED 355
+ + P D
Sbjct: 177 NGDDLAVPAD 186
>gi|91079074|ref|XP_975225.1| PREDICTED: similar to Rab-protein 10 CG17060-PA [Tribolium
castaneum]
gi|270003655|gb|EFA00103.1| hypothetical protein TcasGA2_TC002919 [Tribolium castaneum]
Length = 203
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 104/200 (52%), Gaps = 46/200 (23%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F T+ +TIGIDF KT+ L + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCILFRFSDDAFTTTFISTIGIDFKIKTVELRGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF KW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNEKSFENIVKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D+SDKR VS E GE A+E + F+ETSAKA N
Sbjct: 113 --------------EDVEKMILGNKCDMSDKRTVSKERGETIAREHGIRFMETSAKANIN 158
Query: 227 VKQVRLQLWD-----TAGQE 241
+ + L + TAG+E
Sbjct: 159 IDKAFNDLAEAILDKTAGRE 178
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 82/128 (64%), Gaps = 2/128 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITN SF KW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
M++GNK D+SDKR VS E GE A+E + F+ETSAKA N+ + F +A A+ +D
Sbjct: 116 EKMILGNKCDMSDKRTVSKERGETIAREHGIRFMETSAKANINIDKAFNDLAEAI--LDK 173
Query: 348 TENKPPED 355
T + P D
Sbjct: 174 TAGREPGD 181
>gi|401407236|ref|XP_003883067.1| putative Ras family domain-containing protein [Neospora caninum
Liverpool]
gi|325117483|emb|CBZ53035.1| putative Ras family domain-containing protein [Neospora caninum
Liverpool]
Length = 217
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 101/184 (54%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+ L+ RF D+F +Y TIG+DF +T+ +++ V+LQ+WDTAGQERFR++ +Y
Sbjct: 24 VGKSCLLLRFSDDAFTESYITTIGVDFRFRTINVDNEIVKLQIWDTAGQERFRTITSAYY 83
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + V+VYD+T+ +SF +W+ +V +AN
Sbjct: 84 RGADGIVLVYDVTDRDSFGHVDEWLAEVN------------------------RYAN--E 117
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
T K +LVGNK + +D RQVS EEG+RKA+EL + FIETSAK N
Sbjct: 118 NTCK---------------ILVGNKCEKADDRQVSAEEGQRKAEELGISFIETSAKNAIN 162
Query: 227 VKQV 230
V +
Sbjct: 163 VDEA 166
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 77/116 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+LQ+WDTAGQERFR++ +Y R + V+VYD+T+ +SF +W+ +V +
Sbjct: 62 VKLQIWDTAGQERFRTITSAYYRGADGIVLVYDVTDRDSFGHVDEWLAEVNRYANENTCK 121
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
+LVGNK + +D RQVS EEG+RKA+EL + FIETSAK NV + F VA L M
Sbjct: 122 ILVGNKCEKADDRQVSAEEGQRKAEELGISFIETSAKNAINVDEAFTVVARELIKM 177
>gi|391334640|ref|XP_003741710.1| PREDICTED: ras-related protein Rab-5C-like [Metaseiulus
occidentalis]
Length = 210
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 109/231 (47%), Gaps = 64/231 (27%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
+G + +FKLV LGE + VGK+SL+ RF+ F
Sbjct: 11 NGATAGKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHE 47
Query: 64 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
++TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYD+TN ++
Sbjct: 48 YQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDLTNPDT 107
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
F + W+ +++ + +++I
Sbjct: 108 FSRAKTWVKELQRQASPNIVI--------------------------------------- 128
Query: 184 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
L GNK DL+ KR V T E + A E ++F+ETSAK NV + L +
Sbjct: 129 --ALAGNKADLASKRAVETAEAQAYADENQLLFMETSAKTATNVNDIFLAI 177
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 77/122 (63%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYD+TN ++F + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDLTNPDTFSRAKTWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
L GNK DL+ KR V T E + A E ++F+ETSAK NV +F +A LP D+
Sbjct: 129 ALAGNKADLASKRAVETAEAQAYADENQLLFMETSAKTATNVNDIFLAIAKKLPKNDAAN 188
Query: 350 NK 351
+
Sbjct: 189 QQ 190
>gi|54399922|gb|AAV34202.1| Rab5 protein [Aiptasia pulchella]
Length = 215
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 107/222 (48%), Gaps = 64/222 (28%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+FKLV LGE + VGK+SL+ RF+ F ++TIG
Sbjct: 20 QFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEYQESTIGAA 56
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+
Sbjct: 57 FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQDTFGRAKTWVK 116
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
+++ + +++I L GNK
Sbjct: 117 ELQRQASPNIVI-----------------------------------------ALSGNKA 135
Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
DLS KR V EE + A+E ++F+ETSAK NV + L +
Sbjct: 136 DLSSKRMVDYEEAQTYAEENGLLFMETSAKTAMNVNDIFLAI 177
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 80/123 (65%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQDTFGRAKTWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
L GNK DLS KR V EE + A+E ++F+ETSAK NV +F +A LP D+T+
Sbjct: 129 ALSGNKADLSSKRMVDYEEAQTYAEENGLLFMETSAKTAMNVNDIFLAIAKKLPKSDNTQ 188
Query: 350 NKP 352
P
Sbjct: 189 GGP 191
>gi|258578121|ref|XP_002543242.1| GTP-binding protein ypt5 [Uncinocarpus reesii 1704]
gi|237903508|gb|EEP77909.1| GTP-binding protein ypt5 [Uncinocarpus reesii 1704]
Length = 217
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 119/240 (49%), Gaps = 68/240 (28%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+FKLV LGE +VGK+SL+ RF+ D FD+ ++TIG
Sbjct: 17 QFKLVLLGESAVGKSSLVL-----------------------RFVKDQFDDYRESTIGAA 53
Query: 73 FLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
FL++T+ L E+ TV+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S + W+
Sbjct: 54 FLTQTISLDENTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKSWV 113
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
+++ + ++II L G+ D++
Sbjct: 114 KELQRQANENIIIALAGN------------------------------KLDLV------- 136
Query: 192 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV------RLQLWDTAGQERFRS 245
TD DKR V + E A+E ++F ETSAK NV+++ +L L D AG RS
Sbjct: 137 TDSPDKRAVQAADAEAYAREAGLLFFETSAKTSTNVRELFTAIAKKLPL-DQAGPRNLRS 195
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 76/118 (64%), Gaps = 4/118 (3%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S + W+ +++ + ++II
Sbjct: 67 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKSWVKELQRQANENIII 126
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL DKR V + E A+E ++F ETSAK NV++LF +A LP
Sbjct: 127 ALAGNKLDLVTDSPDKRAVQAADAEAYAREAGLLFFETSAKTSTNVRELFTAIAKKLP 184
>gi|157167495|ref|XP_001654824.1| ras-related protein Rab-10, putative [Aedes aegypti]
gi|157167497|ref|XP_001654825.1| ras-related protein Rab-10, putative [Aedes aegypti]
gi|108882449|gb|EAT46674.1| AAEL002155-PA [Aedes aegypti]
gi|403182468|gb|EJY57406.1| AAEL002155-PB [Aedes aegypti]
Length = 204
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 108/200 (54%), Gaps = 46/200 (23%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F +T+ +TIGIDF KT+ L + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCILFRFSDDAFTSTFISTIGIDFKIKTIELRGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF KW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNEKSFDNIVKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKR VS E GE A+E ++ F+ETSAKA N
Sbjct: 113 --------------EDVEKMILGNKCDMTDKRVVSIERGESIAREHDIRFMETSAKANIN 158
Query: 227 VKQVRLQLWD-----TAGQE 241
+++ +L + T+G+E
Sbjct: 159 IERAFRELAEAILDKTSGKE 178
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 84/128 (65%), Gaps = 2/128 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITN SF KW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFDNIVKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
M++GNK D++DKR VS E GE A+E ++ F+ETSAKA N+++ FR +A A+ +D
Sbjct: 116 EKMILGNKCDMTDKRVVSIERGESIAREHDIRFMETSAKANINIERAFRELAEAI--LDK 173
Query: 348 TENKPPED 355
T K D
Sbjct: 174 TSGKETTD 181
>gi|10880926|gb|AAG24438.1|AF304518_1 small GTP-binding protein RAB5B [Oryza sativa]
gi|5931625|dbj|BAA84717.1| rab5B [Oryza sativa Japonica Group]
Length = 199
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 98/185 (52%), Gaps = 42/185 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSY 105
VGK+ ++ RF+ FD T + T+G FLS+T+ LED T V+ ++WDTAGQER+ +L P Y
Sbjct: 42 VGKSCIVLRFVRGQFDPTSKVTVGASFLSQTLALEDSTIVKFEIWDTAGQERYAALAPLY 101
Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
R + AVVVYDIT+ SF + W+ +++ D+I++L
Sbjct: 102 YRGAAAAVVVYDITSPESFSKAQYWVKELQKHGSPDIIMVL------------------- 142
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 225
VGNK DL R VS++E + A++ N++FIETSAK
Sbjct: 143 ----------------------VGNKADLHKNRHVSSQEAQEYAEKNNMVFIETSAKTAD 180
Query: 226 NVKQV 230
N+ QV
Sbjct: 181 NINQV 185
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 77/114 (67%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ +L P Y R + AVVVYDIT+ SF + W+ +++ D+I+
Sbjct: 81 VKFEIWDTAGQERYAALAPLYYRGAAAAVVVYDITSPESFSKAQYWVKELQKHGSPDIIM 140
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
+LVGNK DL R VS++E + A++ N++FIETSAK N+ Q+F +A LP
Sbjct: 141 VLVGNKADLHKNRHVSSQEAQEYAEKNNMVFIETSAKTADNINQVFEEIAKRLP 194
>gi|194688230|gb|ACF78199.1| unknown [Zea mays]
gi|195637900|gb|ACG38418.1| ras-related protein RHN1 [Zea mays]
gi|413933484|gb|AFW68035.1| Ras protein RHN1 [Zea mays]
Length = 203
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 105/227 (46%), Gaps = 64/227 (28%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
+ + GN +R KLV LG+ VG GK+SL+ RF+ F
Sbjct: 2 AANAGNKIRNAKLVLLGD--VG---------------------AGKSSLVLRFVKGQFVE 38
Query: 64 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
++TIG F S+T+ + D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN S
Sbjct: 39 FQESTIGAAFFSQTLAVNDETVKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITNPAS 98
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
F + KW+ +++ + + I+
Sbjct: 99 FTRAKKWVQELQAQGNQNTIV--------------------------------------- 119
Query: 184 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
L GNK D+ D RQV EE + A+E + F+ETSAK NV +
Sbjct: 120 --ALAGNKADMLDARQVPAEEAKAYAQENGLFFMETSAKTAINVNDI 164
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 74/117 (63%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N + V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + KW+ +++ +
Sbjct: 56 NDETVKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITNPASFTRAKKWVQELQAQGNQ 115
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+ I+ L GNK D+ D RQV EE + A+E + F+ETSAK NV +F +A L
Sbjct: 116 NTIVALAGNKADMLDARQVPAEEAKAYAQENGLFFMETSAKTAINVNDIFYEIAKKL 172
>gi|260792545|ref|XP_002591275.1| hypothetical protein BRAFLDRAFT_114333 [Branchiostoma floridae]
gi|229276479|gb|EEN47286.1| hypothetical protein BRAFLDRAFT_114333 [Branchiostoma floridae]
Length = 209
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIDLDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA++
Sbjct: 79 RGAMGIMLVYDITNEKSFENIKNWIRNIE------------------------EHASA-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D+ D+RQVS + GE+ A E V F+ETSAK+ N
Sbjct: 113 ---------------DVEKMILGNKCDMEDRRQVSRDRGEKLAIEYGVKFMETSAKSSIN 157
Query: 227 VKQVRLQL 234
V++ L
Sbjct: 158 VEEAFFTL 165
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 74/108 (68%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIKNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
M++GNK D+ D+RQVS + GE+ A E V F+ETSAK+ NV++ F
Sbjct: 115 EKMILGNKCDMEDRRQVSRDRGEKLAIEYGVKFMETSAKSSINVEEAF 162
>gi|294654743|ref|XP_456809.2| DEHA2A10956p [Debaryomyces hansenii CBS767]
gi|199429115|emb|CAG84784.2| DEHA2A10956p [Debaryomyces hansenii CBS767]
Length = 221
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 107/232 (46%), Gaps = 72/232 (31%)
Query: 7 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQ 66
F NP KLV LGE +VGK+SL+ RF+ + F +
Sbjct: 3 FPNPATSVKLVLLGEAAVGKSSLVL-----------------------RFVSNDFQENKE 39
Query: 67 ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 126
TIG FL++ + DRT++ ++WDTAGQERF+SL P Y R++ A+VVYDIT SF +
Sbjct: 40 PTIGAAFLTQKCTIGDRTIKYEIWDTAGQERFQSLAPMYYRNAQAALVVYDITKPASFIK 99
Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
W+ ++ + D+ I L
Sbjct: 100 ARHWVKELHEQASKDITIAL---------------------------------------- 119
Query: 187 LVGNKTDLSDK--------RQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNK DL++ R+VS EEG+ A+E ++F ETSAK+ YNV V
Sbjct: 120 -VGNKYDLAENDNENEESLRKVSIEEGKNLAEEEGLLFFETSAKSSYNVNDV 170
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 89/154 (57%), Gaps = 10/154 (6%)
Query: 198 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVA 257
R VS + E K + F+ G + ++ ++WDTAGQERF+SL P Y R++ A
Sbjct: 28 RFVSNDFQENKEPTIGAAFLTQKCTIGD--RTIKYEIWDTAGQERFQSLAPMYYRNAQAA 85
Query: 258 VVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK--------RQVSTEEG 309
+VVYDIT SF + W+ ++ + D+ I LVGNK DL++ R+VS EEG
Sbjct: 86 LVVYDITKPASFIKARHWVKELHEQASKDITIALVGNKYDLAENDNENEESLRKVSIEEG 145
Query: 310 ERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
+ A+E ++F ETSAK+ YNV +F + + +P
Sbjct: 146 KNLAEEEGLLFFETSAKSSYNVNDVFVGIGSKIP 179
>gi|378728260|gb|EHY54719.1| rab family, other [Exophiala dermatitidis NIH/UT8656]
Length = 252
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 108/221 (48%), Gaps = 33/221 (14%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
P KLV LGE +VGK+SL+ RF+ + F + TI
Sbjct: 10 PSSSVKLVLLGEAAVGKSSLVL-----------------------RFVNNDFQENKEPTI 46
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
G FL++ + L +R ++ ++WDTAGQERF SL P Y R++ A+VVYD+T S +
Sbjct: 47 GAAFLTQKISLPNRIIKFEIWDTAGQERFASLAPMYYRNAQAALVVYDLTKPTSLVKAKH 106
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
W+ +++ + ++I LVG N L + T+ + E G D
Sbjct: 107 WVAELQRQASPGIVIALVG----NKLDLCSETSGDSDATA---ESAENEEGGD---SAEA 156
Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
TD D R++ST E + A+E ++F ETSAK G NV V
Sbjct: 157 EPTDSGDARKISTREAKAYAEEEGLLFFETSAKTGTNVADV 197
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 75/145 (51%), Gaps = 31/145 (21%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
++ ++WDTAGQERF SL P Y R++ A+VVYD+T S + W+ +++ + ++I
Sbjct: 62 IKFEIWDTAGQERFASLAPMYYRNAQAALVVYDLTKPTSLVKAKHWVAELQRQASPGIVI 121
Query: 290 MLVGNKTDLS-------------------------------DKRQVSTEEGERKAKELNV 318
LVGNK DL D R++ST E + A+E +
Sbjct: 122 ALVGNKLDLCSETSGDSDATAESAENEEGGDSAEAEPTDSGDARKISTREAKAYAEEEGL 181
Query: 319 MFIETSAKAGYNVKQLFRRVAAALP 343
+F ETSAK G NV +F +A A+P
Sbjct: 182 LFFETSAKTGTNVADVFSAIANAIP 206
>gi|41055758|ref|NP_957264.1| RAB5A, member RAS oncogene family, b [Danio rerio]
gi|29124637|gb|AAH49057.1| RAB5A, member RAS oncogene family like [Danio rerio]
Length = 216
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 53 TIGAAFLTQTLCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALAG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR + ++ + A + +++F+ETSAK NV ++
Sbjct: 134 --NKADLANKRALDFQDAQSYADDNSLLFMETSAKTSMNVSEI 174
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR + ++ + A + +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALAGNKADLANKRALDFQDAQSYADDNSLLFMETSAKTSMNVSEIFMAIAKKLP 183
>gi|432868521|ref|XP_004071579.1| PREDICTED: ras-related protein Rab-37-like [Oryzias latipes]
Length = 229
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 83/126 (65%)
Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI 288
+V+LQ+WDTAGQERFRS+ +Y RD+ +++YDITN SF W+ ++ DV+
Sbjct: 84 KVKLQIWDTAGQERFRSVTHAYYRDAQALLLIYDITNKPSFDNIRAWLTEIHEYAQKDVV 143
Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDST 348
IML+GNK+D++ +R V TEEGE+ AKE + F+ETSAK G N++ F VA L +
Sbjct: 144 IMLLGNKSDMAAERVVKTEEGEKLAKECGIPFMETSAKTGVNIELAFHAVAKELKHRATQ 203
Query: 349 ENKPPE 354
+ P+
Sbjct: 204 QPNDPK 209
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 106/215 (49%), Gaps = 63/215 (29%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
FK++ LG+ +VGKT ++ RF +F + AT+GIDF
Sbjct: 36 FKVMLLGDSAVGKTCVLVRFKDGAF----------------------LGGNFIATVGIDF 73
Query: 74 LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
+K + +++ V+LQ+WDTAGQERFRS+ +Y RD+ +++YDITN SF W+ +
Sbjct: 74 RNKVVDVDNLKVKLQIWDTAGQERFRSVTHAYYRDAQALLLIYDITNKPSFDNIRAWLTE 133
Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
+ DV+IML +GNK+D
Sbjct: 134 IHEYAQKDVVIML-----------------------------------------LGNKSD 152
Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
++ +R V TEEGE+ AKE + F+ETSAK G N++
Sbjct: 153 MAAERVVKTEEGEKLAKECGIPFMETSAKTGVNIE 187
>gi|290462541|gb|ADD24318.1| Ras-related protein Rab-10 [Lepeophtheirus salmonis]
gi|290562327|gb|ADD38560.1| Ras-related protein Rab-10 [Lepeophtheirus salmonis]
Length = 198
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 109/208 (52%), Gaps = 46/208 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F+ T+ +TIGIDF KT L + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCILFRFSEDTFNTTFISTIGIDFKIKTFDLRGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R++ ++VYD+TN SF +KW+ +++ HA
Sbjct: 80 RNAMGIMLVYDVTNPKSFDNIAKWLRNIQ------------------------EHA---- 111
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+V M++GNK D+ DKR +S E+GE ++E + F+ETSAK N
Sbjct: 112 -------------AEEVDKMILGNKCDMEDKRVISKEKGEAISREYGIRFLETSAKTNVN 158
Query: 227 VKQVRLQLWD-----TAGQERFRSLIPS 249
+++ ++L + T G E R +P
Sbjct: 159 IERAFIELAESILDRTPGIEEPRPSLPP 186
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 86/133 (64%), Gaps = 5/133 (3%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R++ ++VYD+TN SF +KW+ +++ +V
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRNAMGIMLVYDVTNPKSFDNIAKWLRNIQEHAAEEV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL----P 343
M++GNK D+ DKR +S E+GE ++E + F+ETSAK N+++ F +A ++ P
Sbjct: 116 DKMILGNKCDMEDKRVISKEKGEAISREYGIRFLETSAKTNVNIERAFIELAESILDRTP 175
Query: 344 GMDSTENK-PPED 355
G++ PP +
Sbjct: 176 GIEEPRPSLPPPN 188
>gi|195448332|ref|XP_002071611.1| GK25049 [Drosophila willistoni]
gi|194167696|gb|EDW82597.1| GK25049 [Drosophila willistoni]
Length = 204
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 107/200 (53%), Gaps = 46/200 (23%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F +T+ +TIGIDF KT+ L + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELRGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF KW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNEKSFENIVKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKR VS E GE A+E + F+ETSAK+ N
Sbjct: 113 --------------EDVEKMILGNKCDMTDKRVVSKERGEAIAREHGIRFMETSAKSNIN 158
Query: 227 VKQVRLQLWD-----TAGQE 241
+++ +L + T+G+E
Sbjct: 159 IERAFCELAEAILDKTSGRE 178
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 84/131 (64%), Gaps = 6/131 (4%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITN SF KW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL----P 343
M++GNK D++DKR VS E GE A+E + F+ETSAK+ N+++ F +A A+
Sbjct: 116 EKMILGNKCDMTDKRVVSKERGEAIAREHGIRFMETSAKSNINIERAFCELAEAILDKTS 175
Query: 344 GMDSTENKPPE 354
G +S EN PE
Sbjct: 176 GRESAEN--PE 184
>gi|294950399|ref|XP_002786610.1| Rab5, putative [Perkinsus marinus ATCC 50983]
gi|239900902|gb|EER18406.1| Rab5, putative [Perkinsus marinus ATCC 50983]
Length = 226
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 77/107 (71%)
Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI 288
Q++ ++WDTAGQER+RSL P Y R + AVVVYDIT+ SF +W++++R+ DV+
Sbjct: 73 QIKFEIWDTAGQERYRSLAPMYYRGAAAAVVVYDITSRESFEGAKRWVNELRSSHNPDVV 132
Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
I GNK+DL+++R+V T+ G A+E +++F+ETSAK G NV +F
Sbjct: 133 IAFCGNKSDLAEEREVPTQRGAEYAQENDLLFVETSAKTGANVHHVF 179
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 99/191 (51%), Gaps = 44/191 (23%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY-LEDRTVRL--QLWDTAGQERFRSLIP 103
VGK+ ++ RF F + TIG F+++T+ D V++ ++WDTAGQER+RSL P
Sbjct: 33 VGKSCMVVRFARGEFYEYQEPTIGAAFMTQTVSPFPDSPVQIKFEIWDTAGQERYRSLAP 92
Query: 104 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHAN 163
Y R + AVVVYDIT+ SF +W++++R+ DV+
Sbjct: 93 MYYRGAAAAVVVYDITSRESFEGAKRWVNELRSSHNPDVV-------------------- 132
Query: 164 SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA 223
I GNK+DL+++R+V T+ G A+E +++F+ETSAK
Sbjct: 133 ---------------------IAFCGNKSDLAEEREVPTQRGAEYAQENDLLFVETSAKT 171
Query: 224 GYNVKQVRLQL 234
G NV V +++
Sbjct: 172 GANVHHVFVEI 182
>gi|302812155|ref|XP_002987765.1| rab family GTPase [Selaginella moellendorffii]
gi|302821214|ref|XP_002992271.1| rab family GTPase [Selaginella moellendorffii]
gi|300139921|gb|EFJ06652.1| rab family GTPase [Selaginella moellendorffii]
gi|300144384|gb|EFJ11068.1| rab family GTPase [Selaginella moellendorffii]
Length = 199
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 80/118 (67%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N V+ ++WDTAGQER+ SL P Y R + A++VYDITNA SF + KW+ +++ + +
Sbjct: 55 NETTVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNAESFARAKKWVQELQRQGNA 114
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
++++ L GNK DL+ KR++ T+EG+ A E + F+ETSAK NV +LF +A LP
Sbjct: 115 NLVMALAGNKADLAAKRKIETQEGQSYADENGLFFMETSAKTAENVNELFYEIARKLP 172
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 99/184 (53%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
GK+SL+ RF+ F + ++TIG FL++T+ + + TV+ ++WDTAGQER+ SL P Y
Sbjct: 21 AGKSSLVLRFVKGQFFDYQESTIGAAFLTQTLAVNETTVKFEIWDTAGQERYHSLAPMYY 80
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + A++VYDITNA SF + KW+ +++ + ++++
Sbjct: 81 RGAAAAIIVYDITNAESFARAKKWVQELQRQGNANLV----------------------- 117
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+ L GNK DL+ KR++ T+EG+ A E + F+ETSAK N
Sbjct: 118 ------------------MALAGNKADLAAKRKIETQEGQSYADENGLFFMETSAKTAEN 159
Query: 227 VKQV 230
V ++
Sbjct: 160 VNEL 163
>gi|294463840|gb|ADE77443.1| unknown [Picea sitchensis]
Length = 234
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 102/186 (54%), Gaps = 19/186 (10%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ L+ +F F + TIG++F ++ + + ++ ++LQ+WDTAGQE FRS+ S
Sbjct: 15 TGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIRNKPIKLQIWDTAGQESFRSITRS 74
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R + A++VYDIT + M + E + H +
Sbjct: 75 YYRGAAGALLVYDITRCQ-------------------LAFMYMIKTEGSRYHFIIKQRET 115
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
F S W++D R ++ IML+GNK DL+ +R V+TEEG + AKE ++F+ETSAK
Sbjct: 116 FTHLSTWLEDARQHASPNMTIMLIGNKCDLAHRRAVTTEEGAQFAKENGLIFLETSAKTS 175
Query: 225 YNVKQV 230
NV++
Sbjct: 176 QNVEEA 181
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 77/135 (57%), Gaps = 22/135 (16%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN-------------------- 267
K ++LQ+WDTAGQE FRS+ SY R + A++VYDIT
Sbjct: 53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRCQLAFMYMIKTEGSRYHFIIKQ 112
Query: 268 --SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSA 325
+F S W++D R ++ IML+GNK DL+ +R V+TEEG + AKE ++F+ETSA
Sbjct: 113 RETFTHLSTWLEDARQHASPNMTIMLIGNKCDLAHRRAVTTEEGAQFAKENGLIFLETSA 172
Query: 326 KAGYNVKQLFRRVAA 340
K NV++ F AA
Sbjct: 173 KTSQNVEEAFINTAA 187
>gi|357627683|gb|EHJ77299.1| small GTP binding protein RAB5 [Danaus plexippus]
Length = 209
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 106/222 (47%), Gaps = 64/222 (28%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+FKLV LGE +VGK+SL+ RF+ F ++TIG
Sbjct: 20 QFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEYQESTIGAA 56
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+
Sbjct: 57 FLTQTLCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQDTFGRAKNWVK 116
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
+++ + ++I L GNK+
Sbjct: 117 ELQRQASPSIVIAL-----------------------------------------AGNKS 135
Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
DL+ KR V EE + A E ++F+ETSAK NV + L +
Sbjct: 136 DLAAKRMVEFEEAQAYADENGLLFMETSAKTAMNVNDIFLAI 177
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 74/114 (64%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + ++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQDTFGRAKNWVKELQRQASPSIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK+DL+ KR V EE + A E ++F+ETSAK NV +F +A LP
Sbjct: 129 ALAGNKSDLAAKRMVEFEEAQAYADENGLLFMETSAKTAMNVNDIFLAIANKLP 182
>gi|72165047|ref|XP_783878.1| PREDICTED: ras-related protein Rab-5B-like [Strongylocentrotus
purpuratus]
Length = 216
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 108/222 (48%), Gaps = 64/222 (28%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+FKLV LGE + VGK+SL+ RF+ F ++TIG
Sbjct: 19 QFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEFQESTIGAA 55
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN +F + W+
Sbjct: 56 FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFGRAKTWVK 115
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
+++ + +++I L GNK
Sbjct: 116 ELQRQASPNIVI-----------------------------------------ALAGNKA 134
Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
DL++KR V EE + A+E +++F+ETSAK NV + L +
Sbjct: 135 DLANKRMVEFEEAQAYAEENSLLFMETSAKTAMNVNDIFLAI 176
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 77/117 (65%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN +F + W+ +++ + +++I
Sbjct: 68 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFGRAKTWVKELQRQASPNIVI 127
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
L GNK DL++KR V EE + A+E +++F+ETSAK NV +F +A LP D
Sbjct: 128 ALAGNKADLANKRMVEFEEAQAYAEENSLLFMETSAKTAMNVNDIFLAIAKKLPKND 184
>gi|123392739|ref|XP_001300294.1| small GTP-binding protein [Trichomonas vaginalis G3]
gi|62736296|gb|AAX97477.1| small Rab GTPase RabF2 [Trichomonas vaginalis]
gi|121881309|gb|EAX87364.1| small GTP-binding protein, putative [Trichomonas vaginalis G3]
Length = 193
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 84/112 (75%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+ L++WDTAGQERFRSL P Y RD+ VA+VV+DIT+ANSF + +WI+++++ RG +
Sbjct: 54 KEQTLEIWDTAGQERFRSLTPMYYRDARVAIVVFDITDANSFSKAKQWINELKSSRGDSI 113
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
++LVGNK+DL R V E ++ AK L++ + ETSAK G N++++F +VA
Sbjct: 114 SLVLVGNKSDLEFIRVVQMSEAKQYAKLLDIPYFETSAKTGVNIEEVFIQVA 165
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 100/190 (52%), Gaps = 41/190 (21%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T GKTS++ R++ F +++ F K + + + L++WDTAGQERFRSL P
Sbjct: 16 THTGKTSIVQRYVNGQFMINSVSSMQAAFFQKNVMIGGKEQTLEIWDTAGQERFRSLTPM 75
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y RD+ VA+VV+DIT+ANSF + +WI+++++ RG + ++L
Sbjct: 76 YYRDARVAIVVFDITDANSFSKAKQWINELKSSRGDSISLVL------------------ 117
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
VGNK+DL R V E ++ AK L++ + ETSAK G
Sbjct: 118 -----------------------VGNKSDLEFIRVVQMSEAKQYAKLLDIPYFETSAKTG 154
Query: 225 YNVKQVRLQL 234
N+++V +Q+
Sbjct: 155 VNIEEVFIQV 164
>gi|167538218|ref|XP_001750774.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163770691|gb|EDQ84373.1| predicted protein [Monosiga brevicollis MX1]
Length = 203
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 107/218 (49%), Gaps = 64/218 (29%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+FKLV LGE +VGK+SL+ RF+ F ++TIG
Sbjct: 15 QFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEYQESTIGAA 51
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
FL++T+ ++D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITNA++F + W+
Sbjct: 52 FLTQTVAVDDVTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNADTFQRARSWVK 111
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
+++ + +++I L GNK
Sbjct: 112 ELQRQANPNIVI-----------------------------------------ALAGNKA 130
Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
DL+ K+QV T E A+E ++F+ETSAK NV ++
Sbjct: 131 DLASKQQVDTNEARAYAEENGLLFMETSAKNAMNVTEI 168
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 82/126 (65%), Gaps = 2/126 (1%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITNA++F + W+ +++ + +++I
Sbjct: 64 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNADTFQRARSWVKELQRQANPNIVI 123
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
L GNK DL+ K+QV T E A+E ++F+ETSAK NV ++F +A LP +T+
Sbjct: 124 ALAGNKADLASKQQVDTNEARAYAEENGLLFMETSAKNAMNVTEIFMAIAKKLP--KNTQ 181
Query: 350 NKPPED 355
P D
Sbjct: 182 PGPRGD 187
>gi|348513153|ref|XP_003444107.1| PREDICTED: ras-related protein Rab-5A-like [Oreochromis niloticus]
Length = 216
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALSG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V ++ + A + +++F+ETSAK NV ++
Sbjct: 134 --NKADLANKRAVDFQDAQSYADDNSLLFMETSAKTSMNVNEI 174
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V ++ + A + +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALSGNKADLANKRAVDFQDAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKRLP 183
>gi|91083485|ref|XP_971858.1| PREDICTED: similar to ras-related protein Rab-8A, putative
[Tribolium castaneum]
Length = 221
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 109/215 (50%), Gaps = 46/215 (21%)
Query: 25 GKTSLITRFMYDSFDNTYQATI-----VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY 79
G L+ + M ++D ++ + VGKT ++ RF D+F+ T+ +TIGIDF +T+
Sbjct: 5 GSLCLVWQKMAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNTTFISTIGIDFKIRTID 64
Query: 80 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 139
L+ + ++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++
Sbjct: 65 LDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIKNWIRNIEENAS 124
Query: 140 SDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ 199
+DV ML +GNK +L +KRQ
Sbjct: 125 ADVEKML-----------------------------------------LGNKCELEEKRQ 143
Query: 200 VSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
VS E GE+ A E + FIETSAKA V++ L
Sbjct: 144 VSKERGEQLAIEYGIKFIETSAKASIRVEEAFFTL 178
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 79/129 (61%), Gaps = 4/129 (3%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 68 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIKNWIRNIEENASADV 127
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF----RRVAAALP 343
ML+GNK +L +KRQVS E GE+ A E + FIETSAKA V++ F R + A +
Sbjct: 128 EKMLLGNKCELEEKRQVSKERGEQLAIEYGIKFIETSAKASIRVEEAFFTLARDIKAKME 187
Query: 344 GMDSTENKP 352
N P
Sbjct: 188 KKLEASNPP 196
>gi|225719738|gb|ACO15715.1| Ras-related protein Rab-8A [Caligus clemensi]
Length = 211
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 104/188 (55%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF+ WI ++ HA+S
Sbjct: 79 RGAMGIMLVYDITNEKSFYNIKNWIRNIE------------------------EHASS-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++D+R V+ E+GE A E + F+ETSAK+ N
Sbjct: 113 ---------------DVEKMILGNKCDMNDRRNVTKEKGEELAIEYGIKFMETSAKSSIN 157
Query: 227 VKQVRLQL 234
V++ L
Sbjct: 158 VEEAFFTL 165
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 83/132 (62%), Gaps = 4/132 (3%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF+ WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFYNIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF----RRVAAALP 343
M++GNK D++D+R V+ E+GE A E + F+ETSAK+ NV++ F R + A +
Sbjct: 115 EKMILGNKCDMNDRRNVTKEKGEELAIEYGIKFMETSAKSSINVEEAFFTLARDIKAKME 174
Query: 344 GMDSTENKPPED 355
N P +D
Sbjct: 175 KRLEASNPPRQD 186
>gi|27066016|pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 64/227 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE VGK+SL+ RF+ F ++
Sbjct: 1 GNKICQFKLVLLGESRVGKSSLVL-----------------------RFVKGQFHEFQES 37
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 38 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 97
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 98 KNWVKELQRQASPNIVIALSG--------------------------------------- 118
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NK DL++KR V +E + A + +++F+ETSAK NV ++ + +
Sbjct: 119 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 114
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168
>gi|7498104|pir||T33855 hypothetical protein D1037.4 - Caenorhabditis elegans
Length = 224
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 100/188 (53%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF DSF+N++ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSDDSFNNSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ SDV
Sbjct: 79 RGAMGIILVYDITNERSFENIKNWIRNIEEHAASDV------------------------ 114
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
ER M++GNK D+ ++R+VS + GE+ A E F+ETSAKA N
Sbjct: 115 -----------ER------MIIGNKCDIEERREVSRDRGEQLAIEYGTKFLETSAKANLN 157
Query: 227 VKQVRLQL 234
+ + L
Sbjct: 158 IDEAFFTL 165
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 74/112 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITNERSFENIKNWIRNIEEHAASDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D+ ++R+VS + GE+ A E F+ETSAKA N+ + F +A
Sbjct: 115 ERMIIGNKCDIEERREVSRDRGEQLAIEYGTKFLETSAKANLNIDEAFFTLA 166
>gi|321457381|gb|EFX68468.1| hypothetical protein DAPPUDRAFT_301441 [Daphnia pulex]
Length = 201
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 108/205 (52%), Gaps = 46/205 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F+ T+ +TIGIDF KT+ L+ + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCILFRFSDDAFNTTFISTIGIDFKIKTIELQGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDIT+ +F +KW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITSVKTFDNIAKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D+ DKR VS E+GE A+E + F+ETSAKA N
Sbjct: 113 --------------EDVEKMILGNKCDVEDKRAVSKEKGEMIAREHGIRFMETSAKANIN 158
Query: 227 VKQVRLQLWD-----TAGQERFRSL 246
++ +L T G+E+ L
Sbjct: 159 IESAFYELAQAILTKTCGREQAEPL 183
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 77/115 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDIT+ +F +KW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITSVKTFDNIAKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
M++GNK D+ DKR VS E+GE A+E + F+ETSAKA N++ F +A A+
Sbjct: 116 EKMILGNKCDVEDKRAVSKEKGEMIAREHGIRFMETSAKANINIESAFYELAQAI 170
>gi|336271401|ref|XP_003350459.1| hypothetical protein SMAC_02172 [Sordaria macrospora k-hell]
gi|380090981|emb|CCC11514.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 236
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 108/221 (48%), Gaps = 43/221 (19%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
P KLV LGE +VGK+SL+ RF+ + F + TI
Sbjct: 9 PSSSVKLVLLGEAAVGKSSLVL-----------------------RFVNNDFQENKEPTI 45
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
G FL++ L RT++ ++WDTAGQERF SL P Y R++ A+VVYD+T S +
Sbjct: 46 GAAFLTQKCNLPTRTIKFEIWDTAGQERFASLAPMYYRNAQAALVVYDLTKPTSLIKAKH 105
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
W+ +++ + ++I LVG N L+ A + + D
Sbjct: 106 WVAELQRQASPGIVIALVG----NKLDLTSDSAGTAEVSGDGDD---------------- 145
Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
N D D R++STEE + A+E ++F ETSAK G+NV +V
Sbjct: 146 NAEDSGDARKISTEEAKTYAEEEGLLFFETSAKTGHNVTEV 186
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 87/159 (54%), Gaps = 23/159 (14%)
Query: 206 ERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 265
E K + F+ + K + ++ ++WDTAGQERF SL P Y R++ A+VVYD+T
Sbjct: 39 ENKEPTIGAAFL--TQKCNLPTRTIKFEIWDTAGQERFASLAPMYYRNAQAALVVYDLTK 96
Query: 266 ANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS---------------------DKRQV 304
S + W+ +++ + ++I LVGNK DL+ D R++
Sbjct: 97 PTSLIKAKHWVAELQRQASPGIVIALVGNKLDLTSDSAGTAEVSGDGDDNAEDSGDARKI 156
Query: 305 STEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
STEE + A+E ++F ETSAK G+NV ++F +A A+P
Sbjct: 157 STEEAKTYAEEEGLLFFETSAKTGHNVTEVFTAIANAIP 195
>gi|15242309|ref|NP_199326.1| Ras-related protein RHA1 [Arabidopsis thaliana]
gi|297794787|ref|XP_002865278.1| hypothetical protein ARALYDRAFT_494466 [Arabidopsis lyrata subsp.
lyrata]
gi|400976|sp|P31582.1|RAF2A_ARATH RecName: Full=Ras-related protein RABF2a; Short=AtRABF2a; AltName:
Full=Ras-related protein Rab5A; Short=AtRab5A; AltName:
Full=Ras-related protein Rha1
gi|14488100|gb|AAK63870.1|AF389298_1 AT5g45130/K17O22_15 [Arabidopsis thaliana]
gi|16484|emb|CAA41863.1| RHA1 [Arabidopsis thaliana]
gi|397594|emb|CAA80534.1| GTP-binding protein [Arabidopsis thaliana]
gi|9758988|dbj|BAB09498.1| ras-related GTP-binding protein RHA1 [Arabidopsis thaliana]
gi|20453279|gb|AAM19878.1| AT5g45130/K17O22_15 [Arabidopsis thaliana]
gi|297311113|gb|EFH41537.1| hypothetical protein ARALYDRAFT_494466 [Arabidopsis lyrata subsp.
lyrata]
gi|332007825|gb|AED95208.1| Ras-related protein RHA1 [Arabidopsis thaliana]
Length = 200
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 96/184 (52%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
GK+SL+ RF+ D F ++TIG F S+T+ + D TV+ ++WDTAGQER+ SL P Y
Sbjct: 21 AGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 80
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + A++V+DITN SF + KW+ +++ + +++
Sbjct: 81 RGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMV----------------------- 117
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+ L GNK DL D R+VS EE E A+E ++ F+ETSAK N
Sbjct: 118 ------------------MALAGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATN 159
Query: 227 VKQV 230
VK +
Sbjct: 160 VKDI 163
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 80/121 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A++V+DITN SF + KW+ +++ + ++++
Sbjct: 59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVM 118
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
L GNK DL D R+VS EE E A+E ++ F+ETSAK NVK +F +A LP + E
Sbjct: 119 ALAGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLPRVQPAE 178
Query: 350 N 350
N
Sbjct: 179 N 179
>gi|197101924|ref|NP_001127003.1| ras-related protein Rab-8A [Pongo abelii]
gi|75070428|sp|Q5R4A3.1|RAB8A_PONAB RecName: Full=Ras-related protein Rab-8A; Flags: Precursor
gi|55733469|emb|CAH93413.1| hypothetical protein [Pongo abelii]
Length = 207
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA++
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIE------------------------EHASA-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAKA N
Sbjct: 113 ---------------DVEKMILGNKRDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
V+ L
Sbjct: 158 VENAFFTL 165
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG-MD 346
M++GNK D++DKRQVS E GE+ A + + F+ETSAKA NV+ F +A + MD
Sbjct: 115 EKMILGNKRDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD 174
Query: 347 ST-ENKPPE 354
E P+
Sbjct: 175 KKLEGNSPQ 183
>gi|221220906|gb|ACM09114.1| Ras-related protein Rab-5C [Salmo salar]
Length = 219
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 111/226 (49%), Gaps = 64/226 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
N + +FKLV LGE +VGK+SL+ RF+ F ++T
Sbjct: 17 NKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEYQEST 53
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 54 IGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFTRAK 113
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
W+ +++ + +++I L G
Sbjct: 114 NWVKELQRQASPNIVIALAG---------------------------------------- 133
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NK DL++KR V +E + A + +++F+ETSAK NV ++ + +
Sbjct: 134 -NKADLANKRAVDFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 178
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 81/123 (65%), Gaps = 5/123 (4%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFTRAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP +
Sbjct: 130 ALAGNKADLANKRAVDFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLP-----K 184
Query: 350 NKP 352
N+P
Sbjct: 185 NEP 187
>gi|302694753|ref|XP_003037055.1| hypothetical protein SCHCODRAFT_64045 [Schizophyllum commune H4-8]
gi|300110752|gb|EFJ02153.1| hypothetical protein SCHCODRAFT_64045 [Schizophyllum commune H4-8]
Length = 208
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 109/219 (49%), Gaps = 65/219 (29%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+FKLV LGE +VGK+SL+ RF+ D FD+ ++TIG
Sbjct: 6 QFKLVLLGESAVGKSSLVL-----------------------RFVKDQFDDYRESTIGAA 42
Query: 73 FLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
FL++T+ L+D TV+ ++WDTAGQER++SL P Y R++ AVVVYDIT + S + WI
Sbjct: 43 FLTQTVTLDDGTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQSTSLEKARTWI 102
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
+++ + ++I L GNK
Sbjct: 103 RELQRQADPSIVI-----------------------------------------ALCGNK 121
Query: 192 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
DL+ +RQV+ EE ++ A+E +M+ ETSAK G V +
Sbjct: 122 ADLAARRQVTQEEAQKYAEEEGLMWGETSAKTGEGVADI 160
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT + S + WI +++ + ++I
Sbjct: 56 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQSTSLEKARTWIRELQRQADPSIVI 115
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL+ +RQV+ EE ++ A+E +M+ ETSAK G V +F +A LP
Sbjct: 116 ALCGNKADLAARRQVTQEEAQKYAEEEGLMWGETSAKTGEGVADIFTAIAKKLP 169
>gi|194206583|ref|XP_001918101.1| PREDICTED: LOW QUALITY PROTEIN: ras-related protein Rab-8B-like
[Equus caballus]
Length = 207
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 102/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF ++F+ T+ + IGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEEAFNTTFISPIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+S
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHASS-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ N
Sbjct: 113 ---------------DVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTN 157
Query: 227 VKQVRLQL 234
V++ L
Sbjct: 158 VEEAFFTL 165
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 77/112 (68%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ NV++ F +A
Sbjct: 115 ERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLA 166
>gi|258564008|ref|XP_002582749.1| vacuolar protein sorting-associated protein 21 [Uncinocarpus reesii
1704]
gi|237908256|gb|EEP82657.1| vacuolar protein sorting-associated protein 21 [Uncinocarpus reesii
1704]
Length = 264
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 108/221 (48%), Gaps = 24/221 (10%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
P KLV LGE +VGK+SL+ RF+ D F + TI
Sbjct: 12 PSSSVKLVLLGEAAVGKSSLVL-----------------------RFVNDDFQENKEPTI 48
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
G FL++ L RT++ ++WDTAGQERF SL P Y R++ A+VVYD+T +S +
Sbjct: 49 GAAFLTQKCSLPTRTIKFEIWDTAGQERFASLAPMYYRNAQAALVVYDLTKPSSLTKAKH 108
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
W+ +++ + ++I LVG+ + + T+ + + + G D
Sbjct: 109 WVAELQRQASPGIVIALVGN-KLDLTNDGNGEGPPSANDTAEAAESSSADGGDEEENPGE 167
Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
T D R++ST+E A E ++F ETSAK G NV +V
Sbjct: 168 QATTPGDARKISTQEASSYADEEGLLFFETSAKTGVNVAEV 208
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 89/188 (47%), Gaps = 45/188 (23%)
Query: 206 ERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 265
E K + F+ + K + ++ ++WDTAGQERF SL P Y R++ A+VVYD+T
Sbjct: 42 ENKEPTIGAAFL--TQKCSLPTRTIKFEIWDTAGQERFASLAPMYYRNAQAALVVYDLTK 99
Query: 266 ANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS-------------------------- 299
+S + W+ +++ + ++I LVGNK DL+
Sbjct: 100 PSSLTKAKHWVAELQRQASPGIVIALVGNKLDLTNDGNGEGPPSANDTAEAAESSSADGG 159
Query: 300 --------------DKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
D R++ST+E A E ++F ETSAK G NV ++F +A A+P
Sbjct: 160 DEEENPGEQATTPGDARKISTQEASSYADEEGLLFFETSAKTGVNVAEVFTAIANAIP-- 217
Query: 346 DSTENKPP 353
T KPP
Sbjct: 218 -ETSLKPP 224
>gi|225718260|gb|ACO14976.1| Ras-related protein Rab-8A [Caligus clemensi]
Length = 212
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 104/188 (55%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF+ WI ++ HA+S
Sbjct: 79 RGAMGIMLVYDITNEKSFYNIKNWIRNIE------------------------EHASS-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++D+R V+ E+GE A E + F+ETSAK+ N
Sbjct: 113 ---------------DVEKMILGNKCDMNDRRNVTKEKGEELAIEYGIKFMETSAKSSIN 157
Query: 227 VKQVRLQL 234
V++ L
Sbjct: 158 VEEAFFTL 165
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 82/130 (63%), Gaps = 4/130 (3%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF+ WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFYNIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF----RRVAAALP 343
M++GNK D++D+R V+ E+GE A E + F+ETSAK+ NV++ F R + A +
Sbjct: 115 EKMILGNKCDMNDRRNVTKEKGEELAIEYGIKFMETSAKSSINVEEAFFTLARDIKAKME 174
Query: 344 GMDSTENKPP 353
+ PP
Sbjct: 175 KRLQEASNPP 184
>gi|209147261|gb|ACI32882.1| Ras-related protein Rab-5C [Salmo salar]
Length = 219
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 111/226 (49%), Gaps = 64/226 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
N + +FKLV LGE +VGK+SL+ RF+ F ++T
Sbjct: 17 NKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEYQEST 53
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 54 IGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFTRAK 113
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
W+ +++ + +++I L G
Sbjct: 114 NWVKELQRQASPNIVIALAG---------------------------------------- 133
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NK DL++KR V +E + A + +++F+ETSAK NV ++ + +
Sbjct: 134 -NKADLANKRAVDFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 178
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 81/123 (65%), Gaps = 5/123 (4%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFTRAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP +
Sbjct: 130 ALAGNKADLANKRAVDFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLP-----K 184
Query: 350 NKP 352
N+P
Sbjct: 185 NEP 187
>gi|115489706|ref|NP_001067340.1| Os12g0631100 [Oryza sativa Japonica Group]
gi|12057010|emb|CAC19792.1| RAB5A protein [Oryza sativa Indica Group]
gi|108863007|gb|ABG22102.1| Ras-related protein RHN1, putative, expressed [Oryza sativa
Japonica Group]
gi|113649847|dbj|BAF30359.1| Os12g0631100 [Oryza sativa Japonica Group]
gi|215686475|dbj|BAG87736.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 203
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 106/227 (46%), Gaps = 64/227 (28%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
+ + GN +R KLV LG+ VG GK+SL+ RF+ F
Sbjct: 2 AANPGNKIRNAKLVLLGD--VG---------------------TGKSSLVLRFVKGQFVE 38
Query: 64 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
++TIG F S+T+ + D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITNA S
Sbjct: 39 FQESTIGAAFFSQTLAVNDETVKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITNAAS 98
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
F + KW+ +++ + + I
Sbjct: 99 FTRAKKWVQELQAQGNPNTI---------------------------------------- 118
Query: 184 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
+ L GNK D+ + RQV EE + A+E + F+ETSAK NV V
Sbjct: 119 -MALAGNKADMVEARQVPAEEAKTYAQENGLFFMETSAKTAINVNDV 164
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 78/127 (61%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N + V+ ++WDTAGQER+ SL P Y R + A+VVYDITNA SF + KW+ +++ +
Sbjct: 56 NDETVKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITNAASFTRAKKWVQELQAQGNP 115
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
+ I+ L GNK D+ + RQV EE + A+E + F+ETSAK NV +F +A L
Sbjct: 116 NTIMALAGNKADMVEARQVPAEEAKTYAQENGLFFMETSAKTAINVNDVFHEIAKRLLQG 175
Query: 346 DSTENKP 352
++ P
Sbjct: 176 QQAQDTP 182
>gi|195398659|ref|XP_002057938.1| GJ15815 [Drosophila virilis]
gi|194150362|gb|EDW66046.1| GJ15815 [Drosophila virilis]
Length = 204
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 106/200 (53%), Gaps = 46/200 (23%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F +T+ +TIGIDF KT+ L + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELRGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF KW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNEKSFENIVKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D+ DKR VS E GE A+E + F+ETSAK+ N
Sbjct: 113 --------------EDVEKMILGNKCDMGDKRVVSKERGEAIAREHGIRFMETSAKSNIN 158
Query: 227 VKQVRLQLWD-----TAGQE 241
+++ +L + T+G+E
Sbjct: 159 IERAFCELAEAILDKTSGRE 178
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 83/131 (63%), Gaps = 6/131 (4%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITN SF KW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL----P 343
M++GNK D+ DKR VS E GE A+E + F+ETSAK+ N+++ F +A A+
Sbjct: 116 EKMILGNKCDMGDKRVVSKERGEAIAREHGIRFMETSAKSNINIERAFCELAEAILDKTS 175
Query: 344 GMDSTENKPPE 354
G +S EN PE
Sbjct: 176 GRESAEN--PE 184
>gi|410902731|ref|XP_003964847.1| PREDICTED: ras-related protein Rab-5C-like [Takifugu rubripes]
Length = 220
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 109/222 (49%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
N + +FKLV LGE +VGK+SL+ RF+ F ++T
Sbjct: 17 NKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEYQEST 53
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 54 IGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFTRAK 113
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
W+ +++ + +++I L
Sbjct: 114 NWVKELQRQASPNIVIAL-----------------------------------------A 132
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 133 GNKADLANKRAVDHQEAQAYADDNSLLFMETSAKTAMNVNEI 174
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 81/123 (65%), Gaps = 5/123 (4%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFTRAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP +
Sbjct: 130 ALAGNKADLANKRAVDHQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLP-----K 184
Query: 350 NKP 352
N+P
Sbjct: 185 NEP 187
>gi|290977760|ref|XP_002671605.1| rab family small GTPase [Naegleria gruberi]
gi|284085175|gb|EFC38861.1| rab family small GTPase [Naegleria gruberi]
Length = 212
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 79/115 (68%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQERFR++ SY R + A++VYDIT N+FH + W+ D R
Sbjct: 54 KSIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRNTFHHLASWLTDARNLTNPHT 113
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
II+L+GNK+DL D+RQVS EE R AKE ++++ETSAK G NV + F A+ +
Sbjct: 114 IIVLIGNKSDLEDQRQVSFEEASRFAKENGLVYVETSAKTGENVTKAFMETASRI 168
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 99/187 (52%), Gaps = 41/187 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+ L+ +F F + TIG++F ++ + +E ++++LQ+WDTAGQERFR++ SY
Sbjct: 18 VGKSCLLHQFTEQKFQSDCPHTIGVEFGTRVIEVEGKSIKLQIWDTAGQERFRAVTRSYY 77
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + A++VYDIT N+FH + W+ D R II+L
Sbjct: 78 RGAAGALMVYDITRRNTFHHLASWLTDARNLTNPHTIIVL-------------------- 117
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+GNK+DL D+RQVS EE R AKE ++++ETSAK G N
Sbjct: 118 ---------------------IGNKSDLEDQRQVSFEEASRFAKENGLVYVETSAKTGEN 156
Query: 227 VKQVRLQ 233
V + ++
Sbjct: 157 VTKAFME 163
>gi|164612813|gb|ABY63655.1| Rab GTPase 2a [Euplotes octocarinatus]
Length = 222
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 81/110 (73%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N + ++LQ+WDTAGQE F+S+ SY R + A++VYDIT +F+ S W+D+VR S
Sbjct: 52 NGETIKLQIWDTAGQESFKSITRSYYRGAAGALLVYDITRRETFNHISTWLDEVRQNGNS 111
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
D++I+L+GNK+DL KRQVSTEEG+ AKE N++F+ETSAK NV+ F
Sbjct: 112 DMVIILIGNKSDLDSKRQVSTEEGKSFAKENNLIFMETSAKNSTNVEDAF 161
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 102/189 (53%), Gaps = 41/189 (21%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ L+ +F F + TIG++F ++ + + T++LQ+WDTAGQE F+S+ S
Sbjct: 16 TGVGKSCLLLQFTDKRFRTQHDLTIGVEFGARAVEINGETIKLQIWDTAGQESFKSITRS 75
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R + A++VYDIT +F+ S W+D+VR SD++I+L
Sbjct: 76 YYRGAAGALLVYDITRRETFNHISTWLDEVRQNGNSDMVIIL------------------ 117
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
+GNK+DL KRQVSTEEG+ AKE N++F+ETSAK
Sbjct: 118 -----------------------IGNKSDLDSKRQVSTEEGKSFAKENNLIFMETSAKNS 154
Query: 225 YNVKQVRLQ 233
NV+ L+
Sbjct: 155 TNVEDAFLE 163
>gi|388514081|gb|AFK45102.1| unknown [Lotus japonicus]
Length = 211
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 82/115 (71%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQE FRS+ SY R + A++VYDIT +F+ + W++D R +++
Sbjct: 53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANM 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
IML+GNK DL+ +R VSTEEGE+ AK+L ++F+E SAK NV++ F + AA +
Sbjct: 113 TIMLIGNKCDLAHRRAVSTEEGEQFAKDLGLIFMEASAKTAQNVEEAFIKTAATI 167
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 102/189 (53%), Gaps = 41/189 (21%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ L+ +F F + TIG++F ++ + ++++ ++LQ+WDTAGQE FRS+ S
Sbjct: 15 TGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRS 74
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R + A++VYDIT +F+ + W++D R +++ IML
Sbjct: 75 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIML------------------ 116
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
+GNK DL+ +R VSTEEGE+ AK+L ++F+E SAK
Sbjct: 117 -----------------------IGNKCDLAHRRAVSTEEGEQFAKDLGLIFMEASAKTA 153
Query: 225 YNVKQVRLQ 233
NV++ ++
Sbjct: 154 QNVEEAFIK 162
>gi|260807647|ref|XP_002598620.1| hypothetical protein BRAFLDRAFT_118354 [Branchiostoma floridae]
gi|229283893|gb|EEN54632.1| hypothetical protein BRAFLDRAFT_118354 [Branchiostoma floridae]
Length = 213
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 109/222 (49%), Gaps = 64/222 (28%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+FKLV LGE + VGK+SL+ RF+ F ++TIG
Sbjct: 18 QFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEYQESTIGAA 54
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+
Sbjct: 55 FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQDTFERAKNWVK 114
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
+++ + +++I L GNK
Sbjct: 115 ELQRQASPNIVI-----------------------------------------ALSGNKA 133
Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
DL++KR V EE + A++ +++F+ETSAK NV + L +
Sbjct: 134 DLANKRMVEYEEAQAYAEDNSLLFMETSAKTAMNVNDIFLAI 175
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 81/123 (65%), Gaps = 5/123 (4%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 67 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQDTFERAKNWVKELQRQASPNIVI 126
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
L GNK DL++KR V EE + A++ +++F+ETSAK NV +F +A LP +
Sbjct: 127 ALSGNKADLANKRMVEYEEAQAYAEDNSLLFMETSAKTAMNVNDIFLAIAKKLP-----K 181
Query: 350 NKP 352
N+P
Sbjct: 182 NEP 184
>gi|225707110|gb|ACO09401.1| Ras-related protein Rab-5C [Osmerus mordax]
Length = 219
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 111/226 (49%), Gaps = 64/226 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
N + +FKLV LGE +VGK+SL+ RF+ F ++T
Sbjct: 17 NKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEYQEST 53
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 54 IGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFTRAK 113
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
W+ +++ + +++I L G
Sbjct: 114 NWVKELQRQASPNIVIALAG---------------------------------------- 133
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NK DL++KR V +E + A + +++F+ETSAK NV ++ + +
Sbjct: 134 -NKADLANKRAVDFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 178
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 81/123 (65%), Gaps = 5/123 (4%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFTRAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP +
Sbjct: 130 ALAGNKADLANKRAVDFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLP-----K 184
Query: 350 NKP 352
N+P
Sbjct: 185 NEP 187
>gi|126139533|ref|XP_001386289.1| Rab5-like GTPase [Scheffersomyces stipitis CBS 6054]
gi|126093571|gb|ABN68260.1| Rab5-like GTPase [Scheffersomyces stipitis CBS 6054]
Length = 215
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 106/224 (47%), Gaps = 57/224 (25%)
Query: 7 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQ 66
F NP KLV LGE +VGK+SL+ RF+ + F +
Sbjct: 3 FPNPATSVKLVLLGEAAVGKSSLVL-----------------------RFVSNDFQENKE 39
Query: 67 ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 126
TIG FL++ + +RT++ ++WDTAGQERF SL P Y R++ A+VVYDIT SF +
Sbjct: 40 PTIGAAFLTQKCTIGERTIKYEIWDTAGQERFASLAPMYYRNAQAAIVVYDITKPASFIK 99
Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
W+ ++ + D+ I LVG N +
Sbjct: 100 ARHWVKELHEQASKDITIALVG--------------NKYD-------------------- 125
Query: 187 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
LV + T+ R+VS EEG+ A+E ++F ETSAK YNV V
Sbjct: 126 LVEDDTEEESLRKVSVEEGKGLAEEEGLLFFETSAKTSYNVNDV 169
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 86/153 (56%), Gaps = 9/153 (5%)
Query: 198 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVA 257
R VS + E K + F+ G + ++ ++WDTAGQERF SL P Y R++ A
Sbjct: 28 RFVSNDFQENKEPTIGAAFLTQKCTIGE--RTIKYEIWDTAGQERFASLAPMYYRNAQAA 85
Query: 258 VVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK-------RQVSTEEGE 310
+VVYDIT SF + W+ ++ + D+ I LVGNK DL + R+VS EEG+
Sbjct: 86 IVVYDITKPASFIKARHWVKELHEQASKDITIALVGNKYDLVEDDTEEESLRKVSVEEGK 145
Query: 311 RKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
A+E ++F ETSAK YNV +F + + +P
Sbjct: 146 GLAEEEGLLFFETSAKTSYNVNDVFIGIGSKIP 178
>gi|448535786|ref|XP_003871017.1| Vps21 late endosomal Rab small monomeric GTPase [Candida
orthopsilosis Co 90-125]
gi|380355373|emb|CCG24891.1| Vps21 late endosomal Rab small monomeric GTPase [Candida
orthopsilosis]
Length = 223
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 108/230 (46%), Gaps = 51/230 (22%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MSSS P KLV LGE +VGK+SL+ RF+ +
Sbjct: 1 MSSS--HPQPATSVKLVLLGEAAVGKSSLVL-----------------------RFVSND 35
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
F + TIG FL++ + DRT++ ++WDTAGQERF SL P Y R++ A+VVYDIT
Sbjct: 36 FQENKEPTIGAAFLTQKCTIGDRTIKYEIWDTAGQERFASLAPMYYRNAQAAIVVYDITK 95
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
SF + W+ ++ + D+ I LVG N + +D T G
Sbjct: 96 PASFVKARHWVKELHEQASKDITIALVG--------------NKYDLVEDEPEDGNTGEG 141
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
++ R+VS EEG+ A E ++F E SAK YNV +V
Sbjct: 142 DQELL------------RKVSKEEGQALADEEGLLFFEASAKTSYNVNEV 179
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 198 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVA 257
R VS + E K + F+ + K + ++ ++WDTAGQERF SL P Y R++ A
Sbjct: 30 RFVSNDFQENKEPTIGAAFL--TQKCTIGDRTIKYEIWDTAGQERFASLAPMYYRNAQAA 87
Query: 258 VVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK---------------R 302
+VVYDIT SF + W+ ++ + D+ I LVGNK DL + R
Sbjct: 88 IVVYDITKPASFVKARHWVKELHEQASKDITIALVGNKYDLVEDEPEDGNTGEGDQELLR 147
Query: 303 QVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
+VS EEG+ A E ++F E SAK YNV ++F + +P
Sbjct: 148 KVSKEEGQALADEEGLLFFEASAKTSYNVNEVFVGIGEKIP 188
>gi|85115075|ref|XP_964811.1| Rab5-like protein ypt5 [Neurospora crassa OR74A]
gi|28926605|gb|EAA35575.1| Rab5-like protein ypt5 [Neurospora crassa OR74A]
gi|38636468|emb|CAE82003.1| probable GTP-binding protein ypt5 [Neurospora crassa]
gi|350295957|gb|EGZ76934.1| putative GTP-binding protein ypt5 [Neurospora tetrasperma FGSC
2509]
Length = 220
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 110/229 (48%), Gaps = 69/229 (30%)
Query: 7 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQ 66
GN +FKLV LGE +VGK+S++ R F+ D FD+ +
Sbjct: 13 MGNRFAQFKLVLLGESAVGKSSIVLR-----------------------FVKDQFDSYRE 49
Query: 67 ATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 125
+TIG FL++T+ L E+ TV+ ++WDTAGQER++SL P Y R++ AVVVYDIT A S
Sbjct: 50 STIGAAFLTQTIALDENTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQAASLD 109
Query: 126 QTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVII 185
+ W+ +++ + ++II
Sbjct: 110 KAKSWVKELQRQANENIII----------------------------------------- 128
Query: 186 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
L GNK DL DKR + T + + AKE ++F ETSAK NV+ +
Sbjct: 129 ALAGNKLDLVQEQPDKRAIQTADAQAYAKEAGLLFFETSAKTAENVQNL 177
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 75/118 (63%), Gaps = 4/118 (3%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A S + W+ +++ + ++II
Sbjct: 69 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQAASLDKAKSWVKELQRQANENIII 128
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL DKR + T + + AKE ++F ETSAK NV+ LF +A LP
Sbjct: 129 ALAGNKLDLVQEQPDKRAIQTADAQAYAKEAGLLFFETSAKTAENVQNLFTEIAKKLP 186
>gi|357153419|ref|XP_003576446.1| PREDICTED: ras-related protein RABF2b-like [Brachypodium
distachyon]
Length = 206
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 108/230 (46%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
M++S G+ +R KLV LG+ VG GK+SL+ RF+
Sbjct: 1 MAASAAAGSKIRNAKLVLLGD--VG---------------------AGKSSLVLRFVKGQ 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
F ++TIG F S+T+ + D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN
Sbjct: 38 FVEFQESTIGAAFFSQTLAVNDETVKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
A SF + KW+ +++ + + +
Sbjct: 98 AASFTRAKKWVQELQAQGNPNTV------------------------------------- 120
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
+ L GNK D+ + RQV EE + A+E + F+ETSAK NV V
Sbjct: 121 ----MALAGNKADMLEARQVPMEEAKTYAQENGLFFMETSAKTATNVNDV 166
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 75/117 (64%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N + V+ ++WDTAGQER+ SL P Y R + A+VVYDITNA SF + KW+ +++ +
Sbjct: 58 NDETVKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITNAASFTRAKKWVQELQAQGNP 117
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+ ++ L GNK D+ + RQV EE + A+E + F+ETSAK NV +F +A L
Sbjct: 118 NTVMALAGNKADMLEARQVPMEEAKTYAQENGLFFMETSAKTATNVNDVFYEIAKRL 174
>gi|336463884|gb|EGO52124.1| hypothetical protein NEUTE1DRAFT_132863 [Neurospora tetrasperma
FGSC 2508]
Length = 1001
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 110/229 (48%), Gaps = 69/229 (30%)
Query: 7 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQ 66
GN +FKLV LGE +VGK+S++ R F+ D FD+ +
Sbjct: 13 MGNRFAQFKLVLLGESAVGKSSIVLR-----------------------FVKDQFDSYRE 49
Query: 67 ATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 125
+TIG FL++T+ L E+ TV+ ++WDTAGQER++SL P Y R++ AVVVYDIT A S
Sbjct: 50 STIGAAFLTQTIALDENTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQAASLD 109
Query: 126 QTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVII 185
+ W+ +++ + ++II
Sbjct: 110 KAKSWVKELQRQANENIII----------------------------------------- 128
Query: 186 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
L GNK DL DKR + T + + AKE ++F ETSAK NV+ +
Sbjct: 129 ALAGNKLDLVQEQPDKRAIQTADAQAYAKEAGLLFFETSAKTAENVQNL 177
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 75/118 (63%), Gaps = 4/118 (3%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A S + W+ +++ + ++II
Sbjct: 69 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQAASLDKAKSWVKELQRQANENIII 128
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL DKR + T + + AKE ++F ETSAK NV+ LF +A LP
Sbjct: 129 ALAGNKLDLVQEQPDKRAIQTADAQAYAKEAGLLFFETSAKTAENVQNLFTEIAKKLP 186
>gi|350537173|ref|NP_001232748.1| putative RAB5C member RAS oncogene family variant 3 [Taeniopygia
guttata]
gi|197128640|gb|ACH45138.1| putative RAB5C member RAS oncogene family variant 3 [Taeniopygia
guttata]
Length = 216
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 110/223 (49%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEYQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALAG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V ++ + A + +++F+ETSAK NV ++
Sbjct: 134 --NKADLANKRAVDFQDAQTYADDNSLLFMETSAKTAMNVNEI 174
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 81/123 (65%), Gaps = 1/123 (0%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
L GNK DL++KR V ++ + A + +++F+ETSAK NV ++F +A LP + +
Sbjct: 130 ALAGNKADLANKRAVDFQDAQTYADDNSLLFMETSAKTAMNVNEIFMAIAKKLP-KNEPQ 188
Query: 350 NKP 352
N P
Sbjct: 189 NAP 191
>gi|307213108|gb|EFN88630.1| Ras-related protein Rab-10 [Harpegnathos saltator]
Length = 200
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 101/188 (53%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF ++F T+ +TIGIDF KT+ L + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCILFRFSDEAFSTTFISTIGIDFKIKTVELRGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN +F KW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNEKTFENIVKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK+D+ DKR VSTE+GE A+E + F+ETSAKA N
Sbjct: 113 --------------EDVEKMILGNKSDMEDKRVVSTEKGEAIAREHGIRFMETSAKANIN 158
Query: 227 VKQVRLQL 234
+ Q +L
Sbjct: 159 IDQAFSEL 166
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 85/128 (66%), Gaps = 2/128 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITN +F KW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKTFENIVKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
M++GNK+D+ DKR VSTE+GE A+E + F+ETSAKA N+ Q F +A A+ +D
Sbjct: 116 EKMILGNKSDMEDKRVVSTEKGEAIAREHGIRFMETSAKANINIDQAFSELAEAI--LDK 173
Query: 348 TENKPPED 355
T K P+D
Sbjct: 174 THGKEPQD 181
>gi|289742273|gb|ADD19884.1| Rab protein 8 [Glossina morsitans morsitans]
Length = 207
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 100/188 (53%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCILFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDIT SF WI ++ +DV ML
Sbjct: 79 RGAMGIMLVYDITQEKSFENIKNWIRNIEENASADVEKML-------------------- 118
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+GNK +L++KRQVS E GE+ A E + F+ETSAKA N
Sbjct: 119 ---------------------LGNKCELNEKRQVSRERGEQLAVEYGIKFMETSAKASIN 157
Query: 227 VKQVRLQL 234
V++ L L
Sbjct: 158 VEEAFLTL 165
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 85/132 (64%), Gaps = 7/132 (5%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDIT SF WI ++ +DV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITQEKSFENIKNWIRNIEENASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG--- 344
ML+GNK +L++KRQVS E GE+ A E + F+ETSAKA NV++ F +A+ +
Sbjct: 115 EKMLLGNKCELNEKRQVSRERGEQLAVEYGIKFMETSAKASINVEEAFLTLASDIKAKME 174
Query: 345 --MDSTENKPPE 354
M++ N PP+
Sbjct: 175 KRMEA--NNPPK 184
>gi|168061692|ref|XP_001782821.1| Rab2/RabB-family small GTPase [Physcomitrella patens subsp. patens]
gi|162665723|gb|EDQ52398.1| Rab2/RabB-family small GTPase [Physcomitrella patens subsp. patens]
Length = 213
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 81/115 (70%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQE FRS+ SY R + A++VYDIT +F+ + W++D R S++
Sbjct: 53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANSNM 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
IML+GNK DL+ +R VSTEEGE+ AKE ++F+ETSAK +NV+ F AA +
Sbjct: 113 TIMLIGNKCDLAHRRAVSTEEGEQFAKENGLVFMETSAKTAHNVEDAFINTAAKI 167
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 100/184 (54%), Gaps = 41/184 (22%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ L+ +F F + TIG++F ++ + ++++ ++LQ+WDTAGQE FRS+ S
Sbjct: 15 TGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDNKPIKLQIWDTAGQESFRSITRS 74
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R + A++VYDIT +F+ + W++D R S++ IML
Sbjct: 75 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANSNMTIML------------------ 116
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
+GNK DL+ +R VSTEEGE+ AKE ++F+ETSAK
Sbjct: 117 -----------------------IGNKCDLAHRRAVSTEEGEQFAKENGLVFMETSAKTA 153
Query: 225 YNVK 228
+NV+
Sbjct: 154 HNVE 157
>gi|168022844|ref|XP_001763949.1| Rab2/RabB-family small GTPase [Physcomitrella patens subsp. patens]
gi|162684954|gb|EDQ71353.1| Rab2/RabB-family small GTPase [Physcomitrella patens subsp. patens]
Length = 213
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 81/115 (70%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQE FRS+ SY R + A++VYDIT +F+ + W++D R S++
Sbjct: 53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANSNM 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
IML+GNK DL+ +R VSTEEGE+ AKE ++F+ETSAK +NV+ F AA +
Sbjct: 113 TIMLIGNKCDLAHRRAVSTEEGEQFAKENGLVFMETSAKTAHNVEDAFINTAAKI 167
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 100/184 (54%), Gaps = 41/184 (22%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ L+ +F F + TIG++F ++ + +E++ ++LQ+WDTAGQE FRS+ S
Sbjct: 15 TGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIENKPIKLQIWDTAGQESFRSITRS 74
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R + A++VYDIT +F+ + W++D R S++ IML
Sbjct: 75 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANSNMTIML------------------ 116
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
+GNK DL+ +R VSTEEGE+ AKE ++F+ETSAK
Sbjct: 117 -----------------------IGNKCDLAHRRAVSTEEGEQFAKENGLVFMETSAKTA 153
Query: 225 YNVK 228
+NV+
Sbjct: 154 HNVE 157
>gi|326436303|gb|EGD81873.1| RAB5C protein [Salpingoeca sp. ATCC 50818]
Length = 201
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 111/228 (48%), Gaps = 65/228 (28%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
+G G + +FKLV LGE T VGK+SL+ RF+ F
Sbjct: 2 AGRGGQQMNQFKLVLLGE-----------------------TAVGKSSLVLRFVKGQFQE 38
Query: 64 TYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
++TIG FL++T+ L+D T V+ ++WDTAGQER+ SL P Y R + A+VVYDIT+
Sbjct: 39 YQESTIGAAFLTQTVCLDDGTKVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITSHA 98
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF + W+ +++ + + +I
Sbjct: 99 SFLRAKSWVKELQKQAENVAVI-------------------------------------- 120
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
L GNK DL+ +R+V TEE E A+E ++F+ETSAK +NV ++
Sbjct: 121 ---ALAGNKADLAARREVQTEEVEAYAQEEKLLFMETSAKTAFNVVEI 165
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 78/115 (67%)
Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI 288
+V+ ++WDTAGQER+ SL P Y R + A+VVYDIT+ SF + W+ +++ + + +
Sbjct: 60 KVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITSHASFLRAKSWVKELQKQAENVAV 119
Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
I L GNK DL+ +R+V TEE E A+E ++F+ETSAK +NV ++F +A LP
Sbjct: 120 IALAGNKADLAARREVQTEEVEAYAQEEKLLFMETSAKTAFNVVEIFAAIAKHLP 174
>gi|326427375|gb|EGD72945.1| GTP-binding protein yptV1 [Salpingoeca sp. ATCC 50818]
Length = 220
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 75/111 (67%)
Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI 288
Q++LQ+WDTAGQE FRS+ SY R + A++VYDIT +F W++D R +++
Sbjct: 55 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFQHLGTWLEDARAHSNPNMV 114
Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
I+LVGNK DL DKRQV EEGER A+E ++FIETSAK NV+ F A
Sbjct: 115 IILVGNKADLEDKRQVPREEGERFARERGLLFIETSAKTAMNVEDAFTTTA 165
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 94/184 (51%), Gaps = 41/184 (22%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
+ VGK+ L+ +F F + TIG++F ++ + ++ ++LQ+WDTAGQE FRS+ S
Sbjct: 16 SAVGKSCLLLQFTDHRFQTVHDLTIGVEFGARMVTIDGHQIKLQIWDTAGQESFRSITRS 75
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R + A++VYDIT +F W++D R +++I+L
Sbjct: 76 YYRGAAGALLVYDITRRETFQHLGTWLEDARAHSNPNMVIIL------------------ 117
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
VGNK DL DKRQV EEGER A+E ++FIETSAK
Sbjct: 118 -----------------------VGNKADLEDKRQVPREEGERFARERGLLFIETSAKTA 154
Query: 225 YNVK 228
NV+
Sbjct: 155 MNVE 158
>gi|108863008|gb|ABA99930.2| Ras-related protein RHN1, putative, expressed [Oryza sativa
Japonica Group]
Length = 249
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 115/248 (46%), Gaps = 70/248 (28%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
+ + GN +R KLV LG+ VG GK+SL+ RF+ F
Sbjct: 2 AANPGNKIRNAKLVLLGD--VG---------------------TGKSSLVLRFVKGQFVE 38
Query: 64 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
++TIG F S+T+ + D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITNA S
Sbjct: 39 FQESTIGAAFFSQTLAVNDETVKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITNAAS 98
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
F + KW+ +++ + + I
Sbjct: 99 FTRAKKWVQELQAQGNPNTI---------------------------------------- 118
Query: 184 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERF 243
+ L GNK D+ + RQV EE + A+E + F+ETSAK NV V ++ + F
Sbjct: 119 -MALAGNKADMVEARQVPAEEAKTYAQENGLFFMETSAKTAINVNDVFHEIGE------F 171
Query: 244 RSLIPSYI 251
RS I S +
Sbjct: 172 RSQIISAV 179
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 73/113 (64%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N + V+ ++WDTAGQER+ SL P Y R + A+VVYDITNA SF + KW+ +++ +
Sbjct: 56 NDETVKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITNAASFTRAKKWVQELQAQGNP 115
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
+ I+ L GNK D+ + RQV EE + A+E + F+ETSAK NV +F +
Sbjct: 116 NTIMALAGNKADMVEARQVPAEEAKTYAQENGLFFMETSAKTAINVNDVFHEI 168
>gi|399163151|gb|AFP33151.1| rab-8, partial [Caenorhabditis elegans]
Length = 210
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 100/188 (53%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF DSF+N++ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 18 VGKTCVLFRFSDDSFNNSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 77
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ SDV
Sbjct: 78 RGAMGIILVYDITNERSFENIKNWIRNIEEHAASDV------------------------ 113
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
ER M++GNK D+ ++R+VS + GE+ A E F+ETSAKA N
Sbjct: 114 -----------ER------MIIGNKCDIEERREVSRDRGEQLAIEYGTKFLETSAKANLN 156
Query: 227 VKQVRLQL 234
+ + L
Sbjct: 157 IDEAFFTL 164
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 74/112 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 54 KKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITNERSFENIKNWIRNIEEHAASDV 113
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D+ ++R+VS + GE+ A E F+ETSAKA N+ + F +A
Sbjct: 114 ERMIIGNKCDIEERREVSRDRGEQLAIEYGTKFLETSAKANLNIDEAFFTLA 165
>gi|71013586|ref|XP_758632.1| hypothetical protein UM02485.1 [Ustilago maydis 521]
gi|46098290|gb|EAK83523.1| hypothetical protein UM02485.1 [Ustilago maydis 521]
Length = 221
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 114/225 (50%), Gaps = 67/225 (29%)
Query: 9 NPLR-KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
NP + +FKLV LGE + VGK+SL+ RF+ D FD+ ++
Sbjct: 7 NPRQLQFKLVLLGE-----------------------SAVGKSSLVLRFVKDQFDDYRES 43
Query: 68 TIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 126
TIG FL++T+ L+ +T V+ ++WDTAGQER++SL P Y R++ AVVVYDIT +S +
Sbjct: 44 TIGAAFLTQTVSLDAQTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQPSSLDK 103
Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
WI +++ + ++II
Sbjct: 104 AKAWIRELQRQADPNIII-----------------------------------------A 122
Query: 187 LVGNKTDL-SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
L GNK DL S +R + TEE E+ A+E ++F+ETSAK NV ++
Sbjct: 123 LAGNKADLASTRRAIPTEEAEKYAQEEGLLFLETSAKNSSNVSEL 167
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 82/123 (66%), Gaps = 1/123 (0%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT +S + WI +++ + ++II
Sbjct: 62 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQPSSLDKAKAWIRELQRQADPNIII 121
Query: 290 MLVGNKTDL-SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDST 348
L GNK DL S +R + TEE E+ A+E ++F+ETSAK NV +LF +A LP +
Sbjct: 122 ALAGNKADLASTRRAIPTEEAEKYAQEEGLLFLETSAKNSSNVSELFTMIARKLPTEQAA 181
Query: 349 ENK 351
E++
Sbjct: 182 ESQ 184
>gi|403161720|ref|XP_003322028.2| rab family protein [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375171898|gb|EFP77609.2| rab family protein [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 285
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 118/239 (49%), Gaps = 42/239 (17%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G P++ KLV LGE +VGK+S++ R F+ + F +
Sbjct: 19 GKPVQ-VKLVLLGEAAVGKSSVVLR-----------------------FVQNDFQENKEP 54
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++ LED+ ++ ++WDTAGQERF SL P Y R++ A+V YDIT ++S +
Sbjct: 55 TIGAAFLTQKCRLEDKIIKFEIWDTAGQERFHSLAPMYYRNAQAAIVAYDITKSSSLDKA 114
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + ++++I L+G+ L +++ S + D
Sbjct: 115 KSWVKELQRQGHANIVIALIGN------KLDLVQSDADQSASNGSSSSNADDEPDDATAT 168
Query: 188 VGNKTDLSD------------KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
N T L D KRQV+ EE E A+E N++F ETSAK G + +V Q+
Sbjct: 169 PDNATSLPDSTAANPNLSSSSKRQVTKEEAEAYAQENNLLFFETSAKTGEGIVEVFTQI 227
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 47/163 (28%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++ ++WDTAGQERF SL P Y R++ A+V YDIT ++S + W+ +++ + +++
Sbjct: 70 KIIKFEIWDTAGQERFHSLAPMYYRNAQAAIVAYDITKSSSLDKAKSWVKELQRQGHANI 129
Query: 288 IIMLVGNKTDL-----------------------------------------------SD 300
+I L+GNK DL S
Sbjct: 130 VIALIGNKLDLVQSDADQSASNGSSSSNADDEPDDATATPDNATSLPDSTAANPNLSSSS 189
Query: 301 KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
KRQV+ EE E A+E N++F ETSAK G + ++F ++A +P
Sbjct: 190 KRQVTKEEAEAYAQENNLLFFETSAKTGEGIVEVFTQIAGKIP 232
>gi|25150215|ref|NP_491199.2| Protein RAB-8 [Caenorhabditis elegans]
gi|40788402|dbj|BAD07034.1| Rab8 [Caenorhabditis elegans]
gi|351060636|emb|CCD68351.1| Protein RAB-8 [Caenorhabditis elegans]
Length = 211
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 100/188 (53%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF DSF+N++ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSDDSFNNSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ SDV
Sbjct: 79 RGAMGIILVYDITNERSFENIKNWIRNIEEHAASDV------------------------ 114
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
ER M++GNK D+ ++R+VS + GE+ A E F+ETSAKA N
Sbjct: 115 -----------ER------MIIGNKCDIEERREVSRDRGEQLAIEYGTKFLETSAKANLN 157
Query: 227 VKQVRLQL 234
+ + L
Sbjct: 158 IDEAFFTL 165
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 74/112 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITNERSFENIKNWIRNIEEHAASDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D+ ++R+VS + GE+ A E F+ETSAKA N+ + F +A
Sbjct: 115 ERMIIGNKCDIEERREVSRDRGEQLAIEYGTKFLETSAKANLNIDEAFFTLA 166
>gi|115451265|ref|NP_001049233.1| Os03g0191400 [Oryza sativa Japonica Group]
gi|113547704|dbj|BAF11147.1| Os03g0191400 [Oryza sativa Japonica Group]
gi|125585227|gb|EAZ25891.1| hypothetical protein OsJ_09728 [Oryza sativa Japonica Group]
Length = 189
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/89 (62%), Positives = 72/89 (80%)
Query: 267 NSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 326
SF SKWI++V T+RG DVII+LVGNKTDL DKRQ+ST+EGE KA+E MF+ETSAK
Sbjct: 70 QSFLSISKWIEEVNTQRGGDVIIVLVGNKTDLVDKRQISTDEGEAKAQEHGAMFMETSAK 129
Query: 327 AGYNVKQLFRRVAAALPGMDSTENKPPED 355
AG+N+K LFR++AA+LPGM++ + ED
Sbjct: 130 AGFNIKPLFRKIAASLPGMEALSSAKQED 158
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 99/221 (44%), Gaps = 92/221 (41%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQA-TIVGKTSLITRFMYDSFDNTYQATI 69
L K+KLVFLG+Q+VGKT++ITRFMYD FD TYQ + G+ + ++ F
Sbjct: 8 LAKYKLVFLGDQAVGKTAIITRFMYDKFDATYQGYSWAGEVPELDPKLHQGF------FC 61
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
G D L R+R SF SK
Sbjct: 62 GSDCL----------------------RYR----------------------QSFLSISK 77
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
WI++V T+RG DVII+L VG
Sbjct: 78 WIEEVNTQRGGDVIIVL-----------------------------------------VG 96
Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NKTDL DKRQ+ST+EGE KA+E MF+ETSAKAG+N+K +
Sbjct: 97 NKTDLVDKRQISTDEGEAKAQEHGAMFMETSAKAGFNIKPL 137
>gi|410911128|ref|XP_003969042.1| PREDICTED: ras-related protein Rab-5A-like [Takifugu rubripes]
Length = 216
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 110/227 (48%), Gaps = 64/227 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEFQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALSG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NK DL+ KR V ++ + A + +++F+ETSAK NV ++ + +
Sbjct: 134 --NKADLASKRAVDFQDAQSYADDNSLLFMETSAKTSMNVNEIFMAI 178
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 75/114 (65%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL+ KR V ++ + A + +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALSGNKADLASKRAVDFQDAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKRLP 183
>gi|123466989|ref|XP_001317232.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121899961|gb|EAY05009.1| hypothetical protein TVAG_416520 [Trichomonas vaginalis G3]
Length = 200
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 107/210 (50%), Gaps = 46/210 (21%)
Query: 38 FDNTYQATI-----VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92
FD Y+ I VGK+ L+ +F +F Y +TIG+DF +T+ ++ + ++LQ+WDT
Sbjct: 6 FDTLYKILIIGDSAVGKSCLLLQFSDQTFSENYVSTIGVDFKIRTLDIDGQNIKLQIWDT 65
Query: 93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIET 152
AGQERF+S+ +Y S +VYDITN +SF KWI+DV
Sbjct: 66 AGQERFQSITSNYYHGSHAIAIVYDITNRDSFENVRKWINDV------------------ 107
Query: 153 NFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL 212
D + T + V+ ++VGNKTDL +KRQVS EG+ A L
Sbjct: 108 --------------------DRLATPQ---VVKLIVGNKTDLEEKRQVSKNEGQAFADSL 144
Query: 213 NVMFIETSAKAGYNVKQVRLQLWDTAGQER 242
V FIETSAK NV ++ +++ R
Sbjct: 145 GVPFIETSAKNASNVHEMFIRMCKAISARR 174
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 76/115 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ ++LQ+WDTAGQERF+S+ +Y S +VYDITN +SF KWI+DV V
Sbjct: 56 QNIKLQIWDTAGQERFQSITSNYYHGSHAIAIVYDITNRDSFENVRKWINDVDRLATPQV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+ ++VGNKTDL +KRQVS EG+ A L V FIETSAK NV ++F R+ A+
Sbjct: 116 VKLIVGNKTDLEEKRQVSKNEGQAFADSLGVPFIETSAKNASNVHEMFIRMCKAI 170
>gi|213513268|ref|NP_001133617.1| Ras-related protein Rab-5A [Salmo salar]
gi|197631797|gb|ACH70622.1| member RAS oncogene family [Salmo salar]
gi|209154698|gb|ACI33581.1| Ras-related protein Rab-5A [Salmo salar]
Length = 216
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 16 GNKISQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEFQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNKESFARA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALAG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR + ++ + A + +++F+ETSAK NV ++
Sbjct: 134 --NKADLANKRALDFQDAQSYADDNSLLFMETSAKTSMNVNEM 174
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNKESFARAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR + ++ + A + +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALAGNKADLANKRALDFQDAQSYADDNSLLFMETSAKTSMNVNEMFMAIAKKLP 183
>gi|317419436|emb|CBN81473.1| Ras-related protein Rab-5C [Dicentrarchus labrax]
Length = 221
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 109/222 (49%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
N + +FKLV LGE +VGK+SL+ RF+ F ++T
Sbjct: 18 NKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQEST 54
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 55 IGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAK 114
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
W+ +++ + +++I L
Sbjct: 115 NWVKELQRQASPNIVIAL-----------------------------------------A 133
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNK D+++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 134 GNKADIANKRAVELQEAQTYADDNSLLFMETSAKTAMNVNEI 175
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 78/117 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 71 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 130
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
L GNK D+++KR V +E + A + +++F+ETSAK NV ++F +A LP D
Sbjct: 131 ALAGNKADIANKRAVELQEAQTYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKND 187
>gi|194762816|ref|XP_001963530.1| GF20241 [Drosophila ananassae]
gi|190629189|gb|EDV44606.1| GF20241 [Drosophila ananassae]
Length = 204
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 102/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F +T+ +TIGIDF KT+ L+ + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF KW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNEKSFENIVKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKR V+ E GE A+E + F+ETSAK+ N
Sbjct: 113 --------------EDVEKMILGNKCDMTDKRVVNKERGEAIAREHGIRFMETSAKSNTN 158
Query: 227 VKQVRLQL 234
+++ +L
Sbjct: 159 IEEAFCEL 166
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 83/129 (64%), Gaps = 4/129 (3%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITN SF KW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL----P 343
M++GNK D++DKR V+ E GE A+E + F+ETSAK+ N+++ F +A A+
Sbjct: 116 EKMILGNKCDMTDKRVVNKERGEAIAREHGIRFMETSAKSNTNIEEAFCELAQAILDKTS 175
Query: 344 GMDSTENKP 352
G +S EN+
Sbjct: 176 GRESAENQE 184
>gi|189237939|ref|XP_001813105.1| PREDICTED: similar to small GTP binding protein RAB5 [Tribolium
castaneum]
gi|270008253|gb|EFA04701.1| Rab-protein 5 [Tribolium castaneum]
Length = 215
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 107/222 (48%), Gaps = 64/222 (28%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+FKLV LGE +VGK+SL+ RF+ F ++TIG
Sbjct: 21 QFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEYQESTIGAA 57
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+
Sbjct: 58 FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQDTFGRAKTWVK 117
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
+++ + +++I L GNK
Sbjct: 118 ELQRQASPNIVIAL-----------------------------------------AGNKQ 136
Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
DL++KR V EE + A E ++F+ETSAK NV + L +
Sbjct: 137 DLANKRMVEFEEAQTYADENGLLFMETSAKTAMNVNDIFLAI 178
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 75/114 (65%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQDTFGRAKTWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V EE + A E ++F+ETSAK NV +F +A LP
Sbjct: 130 ALAGNKQDLANKRMVEFEEAQTYADENGLLFMETSAKTAMNVNDIFLAIAKKLP 183
>gi|238491614|ref|XP_002377044.1| RAB GTPase Ypt5, putative [Aspergillus flavus NRRL3357]
gi|317146075|ref|XP_001821272.2| GTP-binding protein ypt5 [Aspergillus oryzae RIB40]
gi|220697457|gb|EED53798.1| RAB GTPase Ypt5, putative [Aspergillus flavus NRRL3357]
gi|391869236|gb|EIT78438.1| GTPase Rab5/YPT51 [Aspergillus oryzae 3.042]
Length = 218
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 117/244 (47%), Gaps = 76/244 (31%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+FKLV LGE +VGK+SL+ RF+ D FD+ ++TIG
Sbjct: 17 QFKLVLLGESAVGKSSLVL-----------------------RFVKDQFDDYRESTIGAA 53
Query: 73 FLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
FL++T+ L E TV+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S + W+
Sbjct: 54 FLTQTISLDESTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKSWV 113
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
+++ + +++I L GNK
Sbjct: 114 KELQRQANENIVI-----------------------------------------ALAGNK 132
Query: 192 TDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV------RLQLWDTAGQE 241
DL DKR + T + E A+E ++F ETSAK NV+++ +L L D AG
Sbjct: 133 LDLVTENPDKRAIPTADAEAYAREAGLLFFETSAKTSSNVRELFTAIAKKLPL-DQAGPR 191
Query: 242 RFRS 245
R+
Sbjct: 192 NLRT 195
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 77/118 (65%), Gaps = 4/118 (3%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S + W+ +++ + +++I
Sbjct: 67 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKSWVKELQRQANENIVI 126
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL DKR + T + E A+E ++F ETSAK NV++LF +A LP
Sbjct: 127 ALAGNKLDLVTENPDKRAIPTADAEAYAREAGLLFFETSAKTSSNVRELFTAIAKKLP 184
>gi|223995249|ref|XP_002287308.1| canine-like rab-type small G protein [Thalassiosira pseudonana
CCMP1335]
gi|220976424|gb|EED94751.1| canine-like rab-type small G protein [Thalassiosira pseudonana
CCMP1335]
Length = 193
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 106/226 (46%), Gaps = 64/226 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
N + FKLV LG+ T VGK+ L+ RF+ D F + T
Sbjct: 3 NRVCHFKLVLLGD-----------------------TAVGKSCLVVRFVRDEFFEFQEPT 39
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IG FL++T+ L+D TV+ ++WDTAGQER+RSL P Y R + A+VVYDITN +SF
Sbjct: 40 IGAAFLTQTVALDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITNPDSFAGAK 99
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
W+ +++ DV+I +
Sbjct: 100 SWVKELQRRGDQDVVI-----------------------------------------AMA 118
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
GNK DL +RQV EE A+E ++ +ETSAK NVK + +++
Sbjct: 119 GNKADLEARRQVDFEEANAYAEENGILHMETSAKNANNVKALFVEI 164
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 73/114 (64%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+RSL P Y R + A+VVYDITN +SF W+ +++ DV+I
Sbjct: 56 VKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITNPDSFAGAKSWVKELQRRGDQDVVI 115
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
+ GNK DL +RQV EE A+E ++ +ETSAK NVK LF +A LP
Sbjct: 116 AMAGNKADLEARRQVDFEEANAYAEENGILHMETSAKNANNVKALFVEIARRLP 169
>gi|196003794|ref|XP_002111764.1| conserved hypothetical protein [Trichoplax adhaerens]
gi|190585663|gb|EDV25731.1| conserved hypothetical protein [Trichoplax adhaerens]
Length = 216
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 108/206 (52%), Gaps = 46/206 (22%)
Query: 34 MYDSFDNTYQATI-----VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ 88
M S+D ++ + VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ
Sbjct: 1 MAKSYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKKIKLQ 60
Query: 89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVG 148
+WDTAGQERFR++ +Y R + ++V+DITN SF WI ++ SDV M
Sbjct: 61 IWDTAGQERFRTITTAYYRGAMGIMLVFDITNERSFENIKTWIRNIEEHAASDVEKM--- 117
Query: 149 SIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERK 208
++GNK D+ DKRQVS E+ ++
Sbjct: 118 --------------------------------------ILGNKCDVVDKRQVSKEQAQQL 139
Query: 209 AKELNVMFIETSAKAGYNVKQVRLQL 234
A E V F ETSAK G+NV++ + L
Sbjct: 140 AAEYGVKFSETSAKDGHNVEEAFMTL 165
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 76/112 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++V+DITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVFDITNERSFENIKTWIRNIEEHAASDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D+ DKRQVS E+ ++ A E V F ETSAK G+NV++ F +A
Sbjct: 115 EKMILGNKCDVVDKRQVSKEQAQQLAAEYGVKFSETSAKDGHNVEEAFMTLA 166
>gi|154312633|ref|XP_001555644.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
Length = 237
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 125/250 (50%), Gaps = 66/250 (26%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYD-SFDNT--YQATI 69
+FKLV LGE +VGK+SL+ RF+ +D+ + R D + D+T ++TI
Sbjct: 18 QFKLVLLGESAVGKSSLVLRFVKPGYDSNRE----------FRMNKDHTADHTTDRESTI 67
Query: 70 GIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
G FL++T+ L E+ TV+ ++WDTAGQER++SL P Y R++ AVVVYDIT A S +
Sbjct: 68 GAAFLTQTISLDENTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQAASLDKAK 127
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
W+ +++ + ++II L
Sbjct: 128 SWVKELQRQANENIII-----------------------------------------ALA 146
Query: 189 GNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV------RLQLWDTA 238
GNK DL DKR ++TE+ AKE ++F ETSAK NV+++ +L L D A
Sbjct: 147 GNKLDLVTEQPDKRAITTEDASNYAKEAGLLFFETSAKTSENVRELFTAIAKKLPL-DQA 205
Query: 239 GQERFRSLIP 248
G R+ P
Sbjct: 206 GPRNPRAGGP 215
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 77/118 (65%), Gaps = 4/118 (3%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A S + W+ +++ + ++II
Sbjct: 84 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQAASLDKAKSWVKELQRQANENIII 143
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL DKR ++TE+ AKE ++F ETSAK NV++LF +A LP
Sbjct: 144 ALAGNKLDLVTEQPDKRAITTEDASNYAKEAGLLFFETSAKTSENVRELFTAIAKKLP 201
>gi|221116677|ref|XP_002157639.1| PREDICTED: ras-related protein Rab-8A-like [Hydra magnipapillata]
Length = 207
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 101/188 (53%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIDLDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ +DV M
Sbjct: 79 RGAMGIMLVYDITNDKSFENIKNWIRNIEEHAAADVEKM--------------------- 117
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
++GNK D++DKRQVS E G+ A + NV F+ETSAK N
Sbjct: 118 --------------------ILGNKCDMNDKRQVSAERGQALAMDHNVKFMETSAKTSAN 157
Query: 227 VKQVRLQL 234
V++ + L
Sbjct: 158 VEEAFISL 165
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 76/112 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNDKSFENIKNWIRNIEEHAAADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E G+ A + NV F+ETSAK NV++ F +A
Sbjct: 115 EKMILGNKCDMNDKRQVSAERGQALAMDHNVKFMETSAKTSANVEEAFISLA 166
>gi|319921858|gb|ADV78543.1| small GTP binding protein Rab5 [Oryza sativa Indica Group]
Length = 203
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 105/227 (46%), Gaps = 64/227 (28%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
+ + GN +R KLV LG+ VG GK+SL+ RF+ F
Sbjct: 2 AANPGNKIRNAKLVLLGD--VG---------------------TGKSSLVLRFVKGQFVE 38
Query: 64 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
++TIG F S+T+ + D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITNA S
Sbjct: 39 FQESTIGAAFFSQTLAVNDETVKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITNAAS 98
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
F + KW+ +++ + + I
Sbjct: 99 FTRAKKWVQELQAQGNPNTI---------------------------------------- 118
Query: 184 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
+ L GNK D+ + RQV EE A+E + F+ETSAK NV V
Sbjct: 119 -MALAGNKADMIEARQVPAEEARTYAQENGLFFMETSAKTAINVNDV 164
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 77/127 (60%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N + V+ ++WDTAGQER+ SL P Y R + A+VVYDITNA SF + KW+ +++ +
Sbjct: 56 NDETVKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITNAASFTRAKKWVQELQAQGNP 115
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
+ I+ L GNK D+ + RQV EE A+E + F+ETSAK NV +F +A L
Sbjct: 116 NTIMALAGNKADMIEARQVPAEEARTYAQENGLFFMETSAKTAINVNDVFHEIAKRLLQG 175
Query: 346 DSTENKP 352
+N P
Sbjct: 176 QQAQNTP 182
>gi|301753801|ref|XP_002912748.1| PREDICTED: ras-related protein Rab-8A-like [Ailuropoda melanoleuca]
gi|281343489|gb|EFB19073.1| hypothetical protein PANDA_000488 [Ailuropoda melanoleuca]
Length = 207
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA++
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIE------------------------EHASA-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E G++ A + + F+ETSAKA N
Sbjct: 113 ---------------DVEKMILGNKCDVNDKRQVSKERGKKLALDYGIKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
V+ L
Sbjct: 158 VENAFFTL 165
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG-MD 346
M++GNK D++DKRQVS E G++ A + + F+ETSAKA NV+ F +A + MD
Sbjct: 115 EKMILGNKCDVNDKRQVSKERGKKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD 174
Query: 347 ST-ENKPPE 354
E P+
Sbjct: 175 KKLEGNSPQ 183
>gi|125580167|gb|EAZ21313.1| hypothetical protein OsJ_36965 [Oryza sativa Japonica Group]
gi|218187297|gb|EEC69724.1| hypothetical protein OsI_39224 [Oryza sativa Indica Group]
Length = 198
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 106/227 (46%), Gaps = 64/227 (28%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
+ + GN +R KLV LG+ VG GK+SL+ RF+ F
Sbjct: 2 AANPGNKIRNAKLVLLGD--VG---------------------TGKSSLVLRFVKGQFVE 38
Query: 64 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
++TIG F S+T+ + D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITNA S
Sbjct: 39 FQESTIGAAFFSQTLAVNDETVKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITNAAS 98
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
F + KW+ +++ + + I
Sbjct: 99 FTRAKKWVQELQAQGNPNTI---------------------------------------- 118
Query: 184 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
+ L GNK D+ + RQV EE + A+E + F+ETSAK NV V
Sbjct: 119 -MALAGNKADMVEARQVPAEEAKTYAQENGLFFMETSAKTAINVNDV 164
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 78/127 (61%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N + V+ ++WDTAGQER+ SL P Y R + A+VVYDITNA SF + KW+ +++ +
Sbjct: 56 NDETVKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITNAASFTRAKKWVQELQAQGNP 115
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
+ I+ L GNK D+ + RQV EE + A+E + F+ETSAK NV +F +A L
Sbjct: 116 NTIMALAGNKADMVEARQVPAEEAKTYAQENGLFFMETSAKTAINVNDVFHEIAKRLLQG 175
Query: 346 DSTENKP 352
++ P
Sbjct: 176 QQAQDTP 182
>gi|115397973|ref|XP_001214578.1| GTP-binding protein ypt5 [Aspergillus terreus NIH2624]
gi|114192769|gb|EAU34469.1| GTP-binding protein ypt5 [Aspergillus terreus NIH2624]
Length = 218
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 119/244 (48%), Gaps = 76/244 (31%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+FKLV LGE +VGK+SL+ RF+ + FD+ ++TIG
Sbjct: 17 QFKLVLLGESAVGKSSLVL-----------------------RFVKNQFDDYRESTIGAA 53
Query: 73 FLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
FL++T+ L+D T V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S + W+
Sbjct: 54 FLTQTISLDDSTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKSWV 113
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
+++ + +++I L GNK
Sbjct: 114 KELQRQANENIVI-----------------------------------------ALAGNK 132
Query: 192 TDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV------RLQLWDTAGQE 241
DL DKR +ST + E A+E ++F ETSAK+ NV ++ +L L D AG
Sbjct: 133 LDLVTENPDKRAISTADAEAYAREAGLLFFETSAKSSTNVHELFTAIAKKLPL-DQAGPR 191
Query: 242 RFRS 245
R+
Sbjct: 192 NMRT 195
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 78/118 (66%), Gaps = 4/118 (3%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S + W+ +++ + +++I
Sbjct: 67 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKSWVKELQRQANENIVI 126
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL DKR +ST + E A+E ++F ETSAK+ NV +LF +A LP
Sbjct: 127 ALAGNKLDLVTENPDKRAISTADAEAYAREAGLLFFETSAKSSTNVHELFTAIAKKLP 184
>gi|295668134|ref|XP_002794616.1| GTP-binding protein ypt5 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226286032|gb|EEH41598.1| GTP-binding protein ypt5 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 214
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 117/244 (47%), Gaps = 76/244 (31%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+FKLV LGE +VGK+SL+ RF+ D FD+ ++TIG
Sbjct: 17 QFKLVLLGESAVGKSSLVL-----------------------RFVKDQFDDYRESTIGAA 53
Query: 73 FLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
FL++T+ L E TV+ ++WDTAGQER++SL P Y R++ AVVVYDIT +S + W+
Sbjct: 54 FLTQTISLDESTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQVSSLDKAKSWV 113
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
+++ + ++II L GNK
Sbjct: 114 KELQRQANENIII-----------------------------------------ALAGNK 132
Query: 192 TDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV------RLQLWDTAGQE 241
DL DKR + T + E A+E ++F ETSAK+ NV+++ +L L D AG
Sbjct: 133 LDLVMDSPDKRAIQTADAEAYAREAGLLFFETSAKSATNVRELFTAIAKKLPL-DQAGPR 191
Query: 242 RFRS 245
RS
Sbjct: 192 NLRS 195
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 77/118 (65%), Gaps = 4/118 (3%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT +S + W+ +++ + ++II
Sbjct: 67 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQVSSLDKAKSWVKELQRQANENIII 126
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL DKR + T + E A+E ++F ETSAK+ NV++LF +A LP
Sbjct: 127 ALAGNKLDLVMDSPDKRAIQTADAEAYAREAGLLFFETSAKSATNVRELFTAIAKKLP 184
>gi|429852674|gb|ELA27799.1| rab GTPase [Colletotrichum gloeosporioides Nara gc5]
Length = 221
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 108/221 (48%), Gaps = 69/221 (31%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+FKLV LGE +VGK+S++ R F+ D FD+ ++TIG
Sbjct: 20 QFKLVLLGESAVGKSSIVLR-----------------------FVKDQFDSYRESTIGAA 56
Query: 73 FLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
FL++T+ L E+ TV+ ++WDTAGQER++SL P Y R++ AVVVYDIT
Sbjct: 57 FLTQTISLDENTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDIT------------ 104
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
+ S + W+ +++ + ++II L GNK
Sbjct: 105 -----------------------------QSASLDKAKAWVKELQRQANENIIIALAGNK 135
Query: 192 TDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
DL DKR VST + E A+E ++F ETSAK NVK
Sbjct: 136 LDLVNEQPDKRAVSTADAEAYAREAGLLFFETSAKTAENVK 176
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 76/118 (64%), Gaps = 4/118 (3%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT + S + W+ +++ + ++II
Sbjct: 70 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQSASLDKAKAWVKELQRQANENIII 129
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL DKR VST + E A+E ++F ETSAK NVK LF +A LP
Sbjct: 130 ALAGNKLDLVNEQPDKRAVSTADAEAYAREAGLLFFETSAKTAENVKDLFTAIAKKLP 187
>gi|300122550|emb|CBK23119.2| unnamed protein product [Blastocystis hominis]
Length = 211
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 82/111 (73%)
Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI 288
Q++LQ+WDTAGQE FRS+ SY R + A++VYDIT +F Q +KW+ + R S+++
Sbjct: 54 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFTQLTKWLTEARENGSSNMV 113
Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
IML+GNK+DL+ +R VSTEEGE+ A+E ++F+ETSAK NV++ F + A
Sbjct: 114 IMLIGNKSDLNHRRTVSTEEGEKFAEENGLIFLETSAKTAANVEEAFVKTA 164
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 100/186 (53%), Gaps = 41/186 (22%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ L+ +F F + TIG++F ++ + + + ++LQ+WDTAGQE FRS+ S
Sbjct: 15 TGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIGENQIKLQIWDTAGQESFRSITRS 74
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R + A++VYDIT +F Q +KW+ + R S+++IML
Sbjct: 75 YYRGAAGALLVYDITRRETFTQLTKWLTEARENGSSNMVIML------------------ 116
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
+GNK+DL+ +R VSTEEGE+ A+E ++F+ETSAK
Sbjct: 117 -----------------------IGNKSDLNHRRTVSTEEGEKFAEENGLIFLETSAKTA 153
Query: 225 YNVKQV 230
NV++
Sbjct: 154 ANVEEA 159
>gi|50550089|ref|XP_502517.1| YALI0D07128p [Yarrowia lipolytica]
gi|49648385|emb|CAG80705.1| YALI0D07128p [Yarrowia lipolytica CLIB122]
Length = 209
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 102/200 (51%), Gaps = 45/200 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+SL+ RF+ + F + TIG FL++ DRT++ ++WDTAGQERF SL P Y
Sbjct: 20 VGKSSLVLRFVSNEFQENKEPTIGAAFLTQKCNFPDRTIKFEIWDTAGQERFASLAPMYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R++ A+VVYDIT SF + W+ +++++ +II L
Sbjct: 80 RNAQTALVVYDITKPQSFIKARHWVSELKSQASPGIIIAL-------------------- 119
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSD----KRQVSTEEGERKAKELNVMFIETSAK 222
VGNK DL D R+V+ +EG++ A+E ++F ETSAK
Sbjct: 120 ---------------------VGNKRDLVDDDESARKVAEDEGKQLAEEEGLLFFETSAK 158
Query: 223 AGYNVKQVRLQLWDTAGQER 242
G NVK V + + +E+
Sbjct: 159 TGLNVKDVFMAIAQKIPEEQ 178
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 95/160 (59%), Gaps = 10/160 (6%)
Query: 198 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVA 257
R VS E E K + F+ + K + + ++ ++WDTAGQERF SL P Y R++ A
Sbjct: 28 RFVSNEFQENKEPTIGAAFL--TQKCNFPDRTIKFEIWDTAGQERFASLAPMYYRNAQTA 85
Query: 258 VVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD----KRQVSTEEGERKA 313
+VVYDIT SF + W+ +++++ +II LVGNK DL D R+V+ +EG++ A
Sbjct: 86 LVVYDITKPQSFIKARHWVSELKSQASPGIIIALVGNKRDLVDDDESARKVAEDEGKQLA 145
Query: 314 KELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTENKPP 353
+E ++F ETSAK G NVK +F +A +P E K P
Sbjct: 146 EEEGLLFFETSAKTGLNVKDVFMAIAQKIP----EEQKAP 181
>gi|388495178|gb|AFK35655.1| unknown [Lotus japonicus]
Length = 211
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 81/115 (70%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K V+LQ+WDTAGQE FRS+ SY R + A++VYDIT +F+ + W++D R +++
Sbjct: 53 KPVKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANM 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
IML+GNK DL+ +R VSTEEGE+ AKE ++F+E SAK NV++ F + AA +
Sbjct: 113 TIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 101/189 (53%), Gaps = 41/189 (21%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ L+ +F F + TIG++F ++ + ++++ V+LQ+WDTAGQE FRS+ S
Sbjct: 15 TGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPVKLQIWDTAGQESFRSITRS 74
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R + A++VYDIT +F+ + W++D R +++ IML
Sbjct: 75 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIML------------------ 116
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
+GNK DL+ +R VSTEEGE+ AKE ++F+E SAK
Sbjct: 117 -----------------------IGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA 153
Query: 225 YNVKQVRLQ 233
NV++ ++
Sbjct: 154 QNVEEAFIK 162
>gi|297800092|ref|XP_002867930.1| hypothetical protein ARALYDRAFT_492904 [Arabidopsis lyrata subsp.
lyrata]
gi|297313766|gb|EFH44189.1| hypothetical protein ARALYDRAFT_492904 [Arabidopsis lyrata subsp.
lyrata]
Length = 200
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 82/121 (67%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A++V+D+TN SF + KW+ +++ + ++++
Sbjct: 59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVM 118
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
L GNK+DL D R+V+ EE + A+E + F+ETSAK NVK++F +A LP + TE
Sbjct: 119 ALAGNKSDLLDARKVTAEEAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTE 178
Query: 350 N 350
N
Sbjct: 179 N 179
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 97/184 (52%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
GK+SL+ RF+ D F ++TIG F S+T+ + D TV+ ++WDTAGQER+ SL P Y
Sbjct: 21 AGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 80
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + A++V+D+TN SF + KW+ +++ + +++
Sbjct: 81 RGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMV----------------------- 117
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+ L GNK+DL D R+V+ EE + A+E + F+ETSAK N
Sbjct: 118 ------------------MALAGNKSDLLDARKVTAEEAQTYAQENGLFFMETSAKTATN 159
Query: 227 VKQV 230
VK++
Sbjct: 160 VKEI 163
>gi|427786891|gb|JAA58897.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 218
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 106/222 (47%), Gaps = 64/222 (28%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+FKLV LGE + VGK+SL+ RF+ F ++TIG
Sbjct: 21 QFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEYQESTIGAA 57
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+
Sbjct: 58 FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQDTFGRAKTWVK 117
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
+++ + ++I L GNK
Sbjct: 118 ELQRQASPSIVI-----------------------------------------ALAGNKA 136
Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
DL+ KR V EE + ++E ++F+ETSAK NV + L +
Sbjct: 137 DLASKRAVELEEAQAYSEENGLLFMETSAKTAMNVNDIFLAI 178
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 74/114 (64%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + ++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQDTFGRAKTWVKELQRQASPSIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL+ KR V EE + ++E ++F+ETSAK NV +F +A LP
Sbjct: 130 ALAGNKADLASKRAVELEEAQAYSEENGLLFMETSAKTAMNVNDIFLAIAKKLP 183
>gi|47210398|emb|CAF91320.1| unnamed protein product [Tetraodon nigroviridis]
Length = 210
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 110/222 (49%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
N + +FKLV LGE +VGK+SL+ RF+ F ++T
Sbjct: 9 NKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQEST 45
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN+++F +
Sbjct: 46 IGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNSDTFARAK 105
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
W+ +++ + +++I L
Sbjct: 106 NWVKELQRQASPNIVI-----------------------------------------ALA 124
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNK D+++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 125 GNKADITNKRAVEHQEAQTYADDNSLLFMETSAKTAMNVNEI 166
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 79/117 (67%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN+++F + W+ +++ + +++I
Sbjct: 62 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNSDTFARAKNWVKELQRQASPNIVI 121
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
L GNK D+++KR V +E + A + +++F+ETSAK NV ++F +A LP D
Sbjct: 122 ALAGNKADITNKRAVEHQEAQTYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKND 178
>gi|313213136|emb|CBY36994.1| unnamed protein product [Oikopleura dioica]
gi|313234411|emb|CBY24610.1| unnamed protein product [Oikopleura dioica]
Length = 240
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 101/195 (51%), Gaps = 46/195 (23%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-----VRLQLWDTAGQERFR 99
+ VGK++L+ RF SF T T+G+DF ++ + +ED RLQ+WDTAGQERFR
Sbjct: 32 STVGKSALLKRFTEGSFAETSDPTVGVDFFARVIEIEDSVPDFSRCRLQIWDTAGQERFR 91
Query: 100 SLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSF 159
S+ SY R++ A++VYDIT+ SF S W+ D +
Sbjct: 92 SIARSYYRNAVGALIVYDITSRKSFENASNWLKDAQ-----------------------L 128
Query: 160 HHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 219
H N + I L G K+DL+ +R+VSTEE E A E N+ F+ET
Sbjct: 129 HAENG------------------IAIALAGQKSDLNARREVSTEEAEAWAHENNLPFLET 170
Query: 220 SAKAGYNVKQVRLQL 234
SAK YNV+++ +L
Sbjct: 171 SAKNDYNVERIFSKL 185
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/111 (49%), Positives = 78/111 (70%)
Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI 288
+ RLQ+WDTAGQERFRS+ SY R++ A++VYDIT+ SF S W+ D + + +
Sbjct: 76 RCRLQIWDTAGQERFRSIARSYYRNAVGALIVYDITSRKSFENASNWLKDAQLHAENGIA 135
Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
I L G K+DL+ +R+VSTEE E A E N+ F+ETSAK YNV+++F ++A
Sbjct: 136 IALAGQKSDLNARREVSTEEAEAWAHENNLPFLETSAKNDYNVERIFSKLA 186
>gi|384253262|gb|EIE26737.1| small rab-related GTPase [Coccomyxa subellipsoidea C-169]
Length = 213
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 80/108 (74%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
KQ++LQ+WDTAGQE FRS+ SY R + A++VYDIT +F+ + W++D R ++
Sbjct: 53 KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNM 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
IML+GNK+DL+ +R V+TEEGE+ AKE ++F+ETSAK +NV++ F
Sbjct: 113 TIMLIGNKSDLTHRRAVTTEEGEQFAKEHGLVFLETSAKTAHNVEEAF 160
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 100/186 (53%), Gaps = 41/186 (22%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ L+ +F F + TIG++F ++ + ++ + ++LQ+WDTAGQE FRS+ S
Sbjct: 15 TGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRS 74
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R + A++VYDIT +F+ + W++D R ++ IML+
Sbjct: 75 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLI----------------- 117
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
GNK+DL+ +R V+TEEGE+ AKE ++F+ETSAK
Sbjct: 118 ------------------------GNKSDLTHRRAVTTEEGEQFAKEHGLVFLETSAKTA 153
Query: 225 YNVKQV 230
+NV++
Sbjct: 154 HNVEEA 159
>gi|170592447|ref|XP_001900976.1| Rab family protein 8 [Brugia malayi]
gi|158591043|gb|EDP29656.1| Rab family protein 8, putative [Brugia malayi]
Length = 237
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 99/188 (52%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF DSF+N++ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSDDSFNNSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ SDV M
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVDRM--------------------- 117
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
++GNK D+ ++RQVS E GE+ A E F+ETSAKA N
Sbjct: 118 --------------------IIGNKCDIEERRQVSRERGEQLAIEYGTKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
V++ L
Sbjct: 158 VEEAFFTL 165
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 75/112 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D+ ++RQVS E GE+ A E F+ETSAKA NV++ F +A
Sbjct: 115 DRMIIGNKCDIEERRQVSRERGEQLAIEYGTKFMETSAKANINVEEAFFTLA 166
>gi|67610128|ref|XP_667084.1| Rab5 [Cryptosporidium hominis TU502]
gi|54658188|gb|EAL36862.1| Rab5 [Cryptosporidium hominis]
Length = 218
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 74/114 (64%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+RSL P Y R + A+VVYDITN +F WI +++ +D+++
Sbjct: 63 VKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITNVETFQGAKSWISELQNINNNDIVV 122
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
LVGNK DL R V +E AKE ++ ETSAK GYNV++LF +A LP
Sbjct: 123 ALVGNKYDLESSRTVDSETARNYAKEKGILSFETSAKTGYNVQELFEEIARKLP 176
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 93/185 (50%), Gaps = 42/185 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSY 105
VGK+ L+ RF D F + TIG F+++++ ++D TV+ ++WDTAGQER+RSL P Y
Sbjct: 24 VGKSCLVVRFSKDEFHEYQEPTIGAAFMTQSVNVDDDYTVKFEIWDTAGQERYRSLAPMY 83
Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
R + A+VVYDITN +F WI +++ +D+++ L
Sbjct: 84 YRGAAAAIVVYDITNVETFQGAKSWISELQNINNNDIVVAL------------------- 124
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 225
VGNK DL R V +E AKE ++ ETSAK GY
Sbjct: 125 ----------------------VGNKYDLESSRTVDSETARNYAKEKGILSFETSAKTGY 162
Query: 226 NVKQV 230
NV+++
Sbjct: 163 NVQEL 167
>gi|71895669|ref|NP_001026675.1| ras-related protein Rab-8A [Gallus gallus]
gi|82231235|sp|Q5F470.1|RAB8A_CHICK RecName: Full=Ras-related protein Rab-8A; Flags: Precursor
gi|60098467|emb|CAH65064.1| hypothetical protein RCJMB04_2k8 [Gallus gallus]
Length = 207
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 99/188 (52%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT + RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF W+ ++ HA+
Sbjct: 79 RGAMGIMLVYDITNEKSFENIRNWVRNIE------------------------EHAS--- 111
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D +DKRQVS E+GE+ A + F+ETSAKA N
Sbjct: 112 --------------PDVEKMILGNKCDANDKRQVSREQGEKLAASFGIKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
++ L
Sbjct: 158 IENAFFTL 165
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 74/112 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF W+ ++ DV
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIEEHASPDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D +DKRQVS E+GE+ A + F+ETSAKA N++ F +A
Sbjct: 115 EKMILGNKCDANDKRQVSREQGEKLAASFGIKFMETSAKANINIENAFFTLA 166
>gi|66359380|ref|XP_626868.1| Rab5 like small GTpase [Cryptosporidium parvum Iowa II]
gi|46228121|gb|EAK89020.1| Rab5 like small GTpase [Cryptosporidium parvum Iowa II]
Length = 218
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 74/114 (64%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+RSL P Y R + A+VVYDITN +F WI +++ +D+++
Sbjct: 63 VKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITNVETFQGAKSWISELQNINNNDIVV 122
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
LVGNK DL R V +E AKE ++ ETSAK GYNV++LF +A LP
Sbjct: 123 ALVGNKYDLESSRTVDSETARNYAKEKGILSFETSAKTGYNVQELFEEIARKLP 176
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 93/185 (50%), Gaps = 42/185 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSY 105
VGK+ L+ RF D F + TIG F+++++ ++D TV+ ++WDTAGQER+RSL P Y
Sbjct: 24 VGKSCLVVRFSKDEFHEYQEPTIGAAFMTQSVNVDDDYTVKFEIWDTAGQERYRSLAPMY 83
Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
R + A+VVYDITN +F WI +++ +D+++ L
Sbjct: 84 YRGAAAAIVVYDITNVETFQGAKSWISELQNINNNDIVVAL------------------- 124
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 225
VGNK DL R V +E AKE ++ ETSAK GY
Sbjct: 125 ----------------------VGNKYDLESSRTVDSETARNYAKEKGILSFETSAKTGY 162
Query: 226 NVKQV 230
NV+++
Sbjct: 163 NVQEL 167
>gi|66518279|ref|XP_393723.2| PREDICTED: ras-related protein Rab-10 isoform 2 [Apis mellifera]
gi|380028841|ref|XP_003698094.1| PREDICTED: ras-related protein Rab-10-like [Apis florea]
Length = 200
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 97/181 (53%), Gaps = 41/181 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F T+ +TIGIDF KT+ L + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCILFRFSDDAFSTTFISTIGIDFKIKTVELRGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN +F KW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNEKTFENIVKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK+D+ DKR VSTE GE A+E + F+ETSAKA N
Sbjct: 113 --------------EDVEKMILGNKSDMEDKRVVSTERGEAIAREHGIRFMETSAKANIN 158
Query: 227 V 227
+
Sbjct: 159 I 159
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 84/128 (65%), Gaps = 2/128 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITN +F KW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKTFENIVKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
M++GNK+D+ DKR VSTE GE A+E + F+ETSAKA N+ + F +A A+ ++
Sbjct: 116 EKMILGNKSDMEDKRVVSTERGEAIAREHGIRFMETSAKANINIDRAFSELAEAI--LEK 173
Query: 348 TENKPPED 355
T K P+D
Sbjct: 174 THGKEPQD 181
>gi|50557054|ref|XP_505935.1| YALI0F27181p [Yarrowia lipolytica]
gi|49651805|emb|CAG78747.1| YALI0F27181p [Yarrowia lipolytica CLIB122]
Length = 207
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 112/219 (51%), Gaps = 65/219 (29%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+FKLV LGE + VGK+SL+TRF+ D F ++TIG
Sbjct: 14 QFKLVLLGE-----------------------SFVGKSSLVTRFVKDEFLEQRESTIGAA 50
Query: 73 FLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
FL++T+ LED +TVR ++WDTAGQER++SL P Y R++ AVVVYDIT A+S ++ W+
Sbjct: 51 FLTQTVSLEDNKTVRFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLERSKAWV 110
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
+++ R +D I II L GNK
Sbjct: 111 KELQ-HRAADGI----------------------------------------IIGLAGNK 129
Query: 192 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
DL DKR+V TEE A+E ++F ETSA G NV ++
Sbjct: 130 LDLEDKREVPTEEARAYAEEAGLLFFETSALTGENVLEL 168
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 80/121 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K VR ++WDTAGQER++SL P Y R++ AVVVYDIT A+S ++ W+ +++ +
Sbjct: 62 KTVRFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLERSKAWVKELQHRAADGI 121
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II L GNK DL DKR+V TEE A+E ++F ETSA G NV +LF +A +P +S
Sbjct: 122 IIGLAGNKLDLEDKREVPTEEARAYAEEAGLLFFETSALTGENVLELFTEIARKVPFENS 181
Query: 348 T 348
T
Sbjct: 182 T 182
>gi|320169835|gb|EFW46734.1| RAB5B [Capsaspora owczarzaki ATCC 30864]
Length = 238
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 110/225 (48%), Gaps = 46/225 (20%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
+ +FKLV LGE +VGK+SL+ RF+ F D +VG L +
Sbjct: 18 ICQFKLVLLGESAVGKSSLVLRFVKGQFHDRPAPLPLVGMLVLCDLLQQQQQQQQSPSA- 76
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYD+TNA++F +
Sbjct: 77 ---FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDVTNADTFARAKT 133
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
W+ +++ + +++I L G
Sbjct: 134 WVKELQRQASPNIVIAL-----------------------------------------AG 152
Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NK DLS KR V EE A++ ++F+ETSAK NV ++ L +
Sbjct: 153 NKADLSVKRVVEYEEAMAYAEDNGLLFMETSAKTAMNVNEIFLAI 197
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 78/118 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYD+TNA++F + W+ +++ + +++I
Sbjct: 89 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDVTNADTFARAKTWVKELQRQASPNIVI 148
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
L GNK DLS KR V EE A++ ++F+ETSAK NV ++F +A LP DS
Sbjct: 149 ALAGNKADLSVKRVVEYEEAMAYAEDNGLLFMETSAKTAMNVNEIFLAIAKKLPKTDS 206
>gi|348508689|ref|XP_003441886.1| PREDICTED: ras-related protein Rab-5C-like [Oreochromis niloticus]
Length = 222
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 111/227 (48%), Gaps = 64/227 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
N + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 18 ANKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 54
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 55 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFDRA 114
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 115 KNWVKELQRQASPNIVIALAG--------------------------------------- 135
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NK D+++KR V +E + A + +++F+ETSAK NV ++ + +
Sbjct: 136 --NKADIANKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 180
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 77/114 (67%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 72 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFDRAKNWVKELQRQASPNIVI 131
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK D+++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 132 ALAGNKADIANKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLP 185
>gi|308160328|gb|EFO62821.1| Rab2b [Giardia lamblia P15]
Length = 227
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 107/191 (56%), Gaps = 40/191 (20%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-----EDRTVRLQLWDTAGQERFR 99
+ VGK+ L+ RF+ F + T+G++F +KT+ + ++TV++Q+WDTAGQE+FR
Sbjct: 18 SAVGKSCLLLRFVEQKFIPLHDVTVGVEFCNKTLQVPSKDGSEKTVKVQIWDTAGQEQFR 77
Query: 100 SLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVG-SIETNFTHLS 158
S+ SY R + A++VYD+TN +SF W+ D ML G +E + +
Sbjct: 78 SITRSYYRGAAGALLVYDVTNRSSFEALEGWLKD-----------MLAGVGMEASPNGV- 125
Query: 159 FHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIE 218
S ++IMLVGNKTDL KR+VS EEGE+ A++ ++FIE
Sbjct: 126 ----------------------SGMVIMLVGNKTDLEHKRKVSKEEGEQFARDHGLLFIE 163
Query: 219 TSAKAGYNVKQ 229
TSAK NV +
Sbjct: 164 TSAKDDLNVSE 174
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 81/123 (65%), Gaps = 8/123 (6%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG--- 284
K V++Q+WDTAGQE+FRS+ SY R + A++VYD+TN +SF W+ D+ G
Sbjct: 61 KTVKVQIWDTAGQEQFRSITRSYYRGAAGALLVYDVTNRSSFEALEGWLKDMLAGVGMEA 120
Query: 285 -----SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
S ++IMLVGNKTDL KR+VS EEGE+ A++ ++FIETSAK NV + F A
Sbjct: 121 SPNGVSGMVIMLVGNKTDLEHKRKVSKEEGEQFARDHGLLFIETSAKDDLNVSESFNETA 180
Query: 340 AAL 342
A+
Sbjct: 181 RAI 183
>gi|154276338|ref|XP_001539014.1| GTP-binding protein YPT52 [Ajellomyces capsulatus NAm1]
gi|150414087|gb|EDN09452.1| GTP-binding protein YPT52 [Ajellomyces capsulatus NAm1]
Length = 285
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 116/252 (46%), Gaps = 45/252 (17%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
M+ G P KLV LGE +VGK+SL+ RF+ +
Sbjct: 1 MADVGAGPKPSSSVKLVLLGEAAVGKSSLVL-----------------------RFVNND 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
F + TIG FL++ L +RT++ ++WDTAGQERF SL P Y R++ A+VVYD+T
Sbjct: 38 FQENKEPTIGAAFLTQKCSLPNRTIKFEIWDTAGQERFASLAPMYYRNAQAALVVYDLTK 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGS-IETNFTHLSFHHANSFHQTSKWIDDVR--- 176
+S + W+ +++ + ++I LVG+ I+ S A T W R
Sbjct: 98 PSSLIKAKHWVAELQRQASPGIVIALVGNKIDLTNEDPSAAGAAKIPDTQTWPPGSRRSA 157
Query: 177 -------TERGSDVIIMLV------GNKTDL-----SDKRQVSTEEGERKAKELNVMFIE 218
G D + G + DL D R++ST E A+E ++F E
Sbjct: 158 TGSPGPDASEGGDSESSVADRDGEEGGEGDLRDSAAGDARKISTREASSYAEEEGLLFFE 217
Query: 219 TSAKAGYNVKQV 230
TSAK G NV +V
Sbjct: 218 TSAKTGANVLEV 229
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Query: 206 ERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 265
E K + F+ + K + ++ ++WDTAGQERF SL P Y R++ A+VVYD+T
Sbjct: 40 ENKEPTIGAAFL--TQKCSLPNRTIKFEIWDTAGQERFASLAPMYYRNAQAALVVYDLTK 97
Query: 266 ANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 301
+S + W+ +++ + ++I LVGNK DL+++
Sbjct: 98 PSSLIKAKHWVAELQRQASPGIVIALVGNKIDLTNE 133
>gi|190345894|gb|EDK37861.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 212
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 106/224 (47%), Gaps = 55/224 (24%)
Query: 7 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQ 66
F P KLV LGE +VGK+SL+ RF+ + F +
Sbjct: 3 FAPPTTSVKLVLLGEAAVGKSSLVL-----------------------RFVSNDFQENKE 39
Query: 67 ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 126
TIG FL++ + +RT++ ++WDTAGQERF SL P Y R++ A+VVYDIT SF +
Sbjct: 40 PTIGAAFLTQKCTIGERTIKYEIWDTAGQERFASLAPMYYRNAQAALVVYDITKPASFIK 99
Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
W+ ++ + D+ I LVG+ ++D
Sbjct: 100 ARHWVKELHEQASKDITIALVGN------------------KHDLVED------------ 129
Query: 187 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
N D S R+VS EEG++ A E ++F ETSAK YNV +V
Sbjct: 130 --DNDGDDSSLRKVSIEEGQKLADEEGLLFFETSAKTAYNVNEV 171
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 94/166 (56%), Gaps = 11/166 (6%)
Query: 198 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVA 257
R VS + E K + F+ + K + ++ ++WDTAGQERF SL P Y R++ A
Sbjct: 28 RFVSNDFQENKEPTIGAAFL--TQKCTIGERTIKYEIWDTAGQERFASLAPMYYRNAQAA 85
Query: 258 VVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL---------SDKRQVSTEE 308
+VVYDIT SF + W+ ++ + D+ I LVGNK DL S R+VS EE
Sbjct: 86 LVVYDITKPASFIKARHWVKELHEQASKDITIALVGNKHDLVEDDNDGDDSSLRKVSIEE 145
Query: 309 GERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTENKPPE 354
G++ A E ++F ETSAK YNV ++F + + +P S++ + P+
Sbjct: 146 GQKLADEEGLLFFETSAKTAYNVNEVFVGIGSKIPEAPSSKPQQPQ 191
>gi|440635533|gb|ELR05452.1| rab family, other [Geomyces destructans 20631-21]
Length = 219
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 117/244 (47%), Gaps = 76/244 (31%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+FKLV LGE +VGK+SL+ RF+ D FD+ ++TIG
Sbjct: 18 QFKLVLLGESAVGKSSLVL-----------------------RFVKDQFDDYRESTIGAA 54
Query: 73 FLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
FL++T+ L E TV+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S + W+
Sbjct: 55 FLTQTISLDEATTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKAWV 114
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
+++ + ++II L GNK
Sbjct: 115 KELQRQANENIII-----------------------------------------ALAGNK 133
Query: 192 TDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV------RLQLWDTAGQE 241
DL DKR + T + E AKE ++F ETSAK NV+++ +L L D AG
Sbjct: 134 LDLVTEQQDKRVIQTADAEAYAKEAGLLFFETSAKTSENVRELFTAIAKKLPL-DQAGPR 192
Query: 242 RFRS 245
RS
Sbjct: 193 NPRS 196
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 81/128 (63%), Gaps = 5/128 (3%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S + W+ +++ + ++II
Sbjct: 68 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKAWVKELQRQANENIII 127
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
L GNK DL DKR + T + E AKE ++F ETSAK NV++LF +A LP +
Sbjct: 128 ALAGNKLDLVTEQQDKRVIQTADAEAYAKEAGLLFFETSAKTSENVRELFTAIAKKLP-L 186
Query: 346 DSTENKPP 353
D + P
Sbjct: 187 DQAGPRNP 194
>gi|225713422|gb|ACO12557.1| Ras-related protein Rab-5C [Lepeophtheirus salmonis]
gi|290462345|gb|ADD24220.1| Ras-related protein Rab-5C [Lepeophtheirus salmonis]
gi|290561497|gb|ADD38149.1| Ras-related protein Rab-5C [Lepeophtheirus salmonis]
Length = 216
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 109/224 (48%), Gaps = 64/224 (28%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+ +FKLV LGE +VGK+SL+ RF+ F ++TIG
Sbjct: 19 ICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQESTIG 55
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYD+TN +SF + W
Sbjct: 56 AAFLTQTICLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDVTNQDSFIRAKNW 115
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
+ +++ + +++I L GN
Sbjct: 116 VKELQRQASPNIVI-----------------------------------------ALAGN 134
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
K DL+ KR V EE + A+E ++F+ETSAK NV V L++
Sbjct: 135 KADLNTKRLVIYEEAQTYAEENGLLFMETSAKTALNVNDVFLEI 178
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 75/114 (65%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYD+TN +SF + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDVTNQDSFIRAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL+ KR V EE + A+E ++F+ETSAK NV +F +A LP
Sbjct: 130 ALAGNKADLNTKRLVIYEEAQTYAEENGLLFMETSAKTALNVNDVFLEIAKKLP 183
>gi|146420668|ref|XP_001486288.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 212
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 106/224 (47%), Gaps = 55/224 (24%)
Query: 7 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQ 66
F P KLV LGE +VGK+SL+ RF+ + F +
Sbjct: 3 FAPPTTSVKLVLLGEAAVGKSSLVL-----------------------RFVSNDFQENKE 39
Query: 67 ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 126
TIG FL++ + +RT++ ++WDTAGQERF SL P Y R++ A+VVYDIT SF +
Sbjct: 40 PTIGAAFLTQKCTIGERTIKYEIWDTAGQERFASLAPMYYRNAQAALVVYDITKPASFIK 99
Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
W+ ++ + D+ I LVG+ ++D
Sbjct: 100 ARHWVKELHEQASKDITIALVGN------------------KHDLVED------------ 129
Query: 187 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
N D S R+VS EEG++ A E ++F ETSAK YNV +V
Sbjct: 130 --DNDGDDSSLRKVSIEEGQKLADEEGLLFFETSAKTAYNVNEV 171
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 88/155 (56%), Gaps = 11/155 (7%)
Query: 198 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVA 257
R VS + E K + F+ + K + ++ ++WDTAGQERF SL P Y R++ A
Sbjct: 28 RFVSNDFQENKEPTIGAAFL--TQKCTIGERTIKYEIWDTAGQERFASLAPMYYRNAQAA 85
Query: 258 VVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL---------SDKRQVSTEE 308
+VVYDIT SF + W+ ++ + D+ I LVGNK DL S R+VS EE
Sbjct: 86 LVVYDITKPASFIKARHWVKELHEQASKDITIALVGNKHDLVEDDNDGDDSSLRKVSIEE 145
Query: 309 GERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
G++ A E ++F ETSAK YNV ++F + + +P
Sbjct: 146 GQKLADEEGLLFFETSAKTAYNVNEVFVGIGSKIP 180
>gi|413933483|gb|AFW68034.1| putative GTP-binding protein [Zea mays]
Length = 199
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 105/227 (46%), Gaps = 64/227 (28%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
+ + GN +R KLV LG+ VG GK+SL+ RF+ F
Sbjct: 2 AANAGNKIRNAKLVLLGD--VG---------------------AGKSSLVLRFVKGQFVE 38
Query: 64 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
++TIG F S+T+ + D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN S
Sbjct: 39 FQESTIGAAFFSQTLAVNDETVKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITNPAS 98
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
F + KW+ +++ + + I+
Sbjct: 99 FTRAKKWVQELQAQGNQNTIV--------------------------------------- 119
Query: 184 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
L GNK D+ D RQV EE + A+E + F+ETSAK NV +
Sbjct: 120 --ALAGNKADMLDARQVPAEEAKAYAQENGLFFMETSAKTAINVNDI 164
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 72/113 (63%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N + V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + KW+ +++ +
Sbjct: 56 NDETVKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITNPASFTRAKKWVQELQAQGNQ 115
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
+ I+ L GNK D+ D RQV EE + A+E + F+ETSAK NV +F +
Sbjct: 116 NTIVALAGNKADMLDARQVPAEEAKAYAQENGLFFMETSAKTAINVNDIFYEI 168
>gi|17737369|ref|NP_523419.1| Rab10 [Drosophila melanogaster]
gi|194893373|ref|XP_001977864.1| GG19277 [Drosophila erecta]
gi|195345923|ref|XP_002039518.1| GM23016 [Drosophila sechellia]
gi|195482026|ref|XP_002101878.1| GE17866 [Drosophila yakuba]
gi|2317272|dbj|BAA21744.1| Rab10 [Drosophila melanogaster]
gi|7295615|gb|AAF50924.1| Rab10 [Drosophila melanogaster]
gi|16648398|gb|AAL25464.1| LD39986p [Drosophila melanogaster]
gi|190649513|gb|EDV46791.1| GG19277 [Drosophila erecta]
gi|194134744|gb|EDW56260.1| GM23016 [Drosophila sechellia]
gi|194189402|gb|EDX02986.1| GE17866 [Drosophila yakuba]
gi|220946172|gb|ACL85629.1| Rab10-PA [synthetic construct]
gi|220955946|gb|ACL90516.1| Rab10-PA [synthetic construct]
Length = 204
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 107/200 (53%), Gaps = 46/200 (23%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F +T+ +TIGIDF KT+ L + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELRGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF KW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNEKSFENIVKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKR V+ E GE A+E + F+ETSAK+ N
Sbjct: 113 --------------EDVEKMILGNKCDMTDKRVVNKERGEAIAREHGIRFMETSAKSNIN 158
Query: 227 VKQVRLQLWD-----TAGQE 241
+++ +L + T+G+E
Sbjct: 159 IERAFCELAEAILDKTSGRE 178
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 83/129 (64%), Gaps = 4/129 (3%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITN SF KW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL----P 343
M++GNK D++DKR V+ E GE A+E + F+ETSAK+ N+++ F +A A+
Sbjct: 116 EKMILGNKCDMTDKRVVNKERGEAIAREHGIRFMETSAKSNINIERAFCELAEAILDKTS 175
Query: 344 GMDSTENKP 352
G +S EN+
Sbjct: 176 GRESAENQE 184
>gi|432910626|ref|XP_004078445.1| PREDICTED: ras-related protein Rab-5A-like [Oryzias latipes]
Length = 216
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 111/227 (48%), Gaps = 64/227 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFVRA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALAG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NK DL++KR + ++ + A + +++F+ETSAK NV ++ + +
Sbjct: 134 --NKADLANKRALDFQDAQSYADDNSLLFMETSAKTSMNVNEIFMAI 178
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFVRAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR + ++ + A + +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALAGNKADLANKRALDFQDAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 183
>gi|224087698|ref|XP_002197665.1| PREDICTED: ras-related protein Rab-8A isoform 1 [Taeniopygia
guttata]
Length = 207
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 99/188 (52%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT + RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF W+ ++ HA+
Sbjct: 79 RGAMGIMLVYDITNEKSFENIRNWVRNIE------------------------EHAS--- 111
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D +DKRQVS E+GE+ A + F+ETSAKA N
Sbjct: 112 --------------PDVEKMILGNKCDANDKRQVSREQGEKLAASFGIKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
++ L
Sbjct: 158 IENAFFTL 165
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 74/112 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF W+ ++ DV
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIEEHASPDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D +DKRQVS E+GE+ A + F+ETSAKA N++ F +A
Sbjct: 115 EKMILGNKCDANDKRQVSREQGEKLAASFGIKFMETSAKANINIENAFFTLA 166
>gi|407035371|gb|EKE37665.1| Rab family GTPase [Entamoeba nuttalli P19]
Length = 190
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 98/191 (51%), Gaps = 42/191 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTSL+ R+ F +ATIG +F++ + + + ++L LWDTAGQE++RS++ Y
Sbjct: 16 VGKTSLVNRYAKGGFSTNEKATIGANFIATSYIKQGQEIKLALWDTAGQEKYRSMVSMYY 75
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R S AV+VYD+TN SF W D++ DV+ ML
Sbjct: 76 RGSRGAVIVYDVTNRTSFEDIRGWCDEIFKAE-PDVVCML-------------------- 114
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
VGNK D + +R VS+EEGE AKEL ++F E SAK G N
Sbjct: 115 ---------------------VGNKADNNQERLVSSEEGEELAKELGILFSEASAKTGDN 153
Query: 227 VKQVRLQLWDT 237
VK+ +QL++
Sbjct: 154 VKETFIQLFEA 164
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 90/148 (60%), Gaps = 12/148 (8%)
Query: 216 FIETS-AKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 274
FI TS K G ++++L LWDTAGQE++RS++ Y R S AV+VYD+TN SF
Sbjct: 42 FIATSYIKQG---QEIKLALWDTAGQEKYRSMVSMYYRGSRGAVIVYDVTNRTSFEDIRG 98
Query: 275 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 334
W D++ DV+ MLVGNK D + +R VS+EEGE AKEL ++F E SAK G NVK+
Sbjct: 99 WCDEIFKAE-PDVVCMLVGNKADNNQERLVSSEEGEELAKELGILFSEASAKTGDNVKET 157
Query: 335 FRRVAAA-------LPGMDSTENKPPED 355
F ++ A LP D NK ++
Sbjct: 158 FIQLFEAINFDESHLPKGDIQLNKSKQE 185
>gi|67526769|ref|XP_661446.1| hypothetical protein AN3842.2 [Aspergillus nidulans FGSC A4]
gi|40739917|gb|EAA59107.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
gi|259481595|tpe|CBF75261.1| TPA: RAB GTPase Ypt5, putative (AFU_orthologue; AFUA_4G08040)
[Aspergillus nidulans FGSC A4]
Length = 218
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 117/244 (47%), Gaps = 76/244 (31%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+FKLV LGE +VGK+SL+ RF+ D FD+ ++TIG
Sbjct: 17 QFKLVLLGESAVGKSSLVL-----------------------RFVKDQFDDYRESTIGAA 53
Query: 73 FLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
FL++T+ L E TV+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S + W+
Sbjct: 54 FLTQTISLDESTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKSWV 113
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
+++ + +++I L GNK
Sbjct: 114 KELQRQANENIVI-----------------------------------------ALAGNK 132
Query: 192 TDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV------RLQLWDTAGQE 241
DL DKR + T + E A+E ++F ETSAK NV+++ +L L D AG
Sbjct: 133 LDLVTENPDKRAIPTADAEAYAREAGLLFFETSAKTSSNVRELFTAIAKKLPL-DQAGPR 191
Query: 242 RFRS 245
R+
Sbjct: 192 NMRT 195
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 77/118 (65%), Gaps = 4/118 (3%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A+S + W+ +++ + +++I
Sbjct: 67 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKSWVKELQRQANENIVI 126
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL DKR + T + E A+E ++F ETSAK NV++LF +A LP
Sbjct: 127 ALAGNKLDLVTENPDKRAIPTADAEAYAREAGLLFFETSAKTSSNVRELFTAIAKKLP 184
>gi|406693962|gb|EKC97301.1| GTPase [Trichosporon asahii var. asahii CBS 8904]
Length = 241
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 105/195 (53%), Gaps = 24/195 (12%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKT----MYLEDRTVRLQLWDTAGQERFRSLI 102
VGK+SL+ RF+ + F+ TIG FL++T LE+R V+ ++WDTAGQERF SL
Sbjct: 21 VGKSSLVLRFVQNDFNENTSPTIGAAFLTQTDLPECRLENRVVKFEIWDTAGQERFHSLA 80
Query: 103 PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHA 162
P Y R++ AVVVYDIT A S + W+ +++ + +++I LVG+ L
Sbjct: 81 PMYYRNAAAAVVVYDITKAASLEKAKAWVKELQRQANPNIVIALVGN------KLDLVEG 134
Query: 163 NSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
+S +++ D + +D D RQV T E + A E ++F E SAK
Sbjct: 135 SSASESA----DAEADTPAD----------DEETARQVPTSEAQAYATESGLLFFEASAK 180
Query: 223 AGYNVKQVRLQLWDT 237
G NV++V ++ T
Sbjct: 181 TGTNVQEVFTEIAKT 195
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 80/144 (55%), Gaps = 22/144 (15%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQERF SL P Y R++ AVVVYDIT A S + W+ +++ + +++I
Sbjct: 63 VKFEIWDTAGQERFHSLAPMYYRNAAAAVVVYDITKAASLEKAKAWVKELQRQANPNIVI 122
Query: 290 MLVGNKTDLSD---------------------KRQVSTEEGERKAKELNVMFIETSAKAG 328
LVGNK DL + RQV T E + A E ++F E SAK G
Sbjct: 123 ALVGNKLDLVEGSSASESADAEADTPADDEETARQVPTSEAQAYATESGLLFFEASAKTG 182
Query: 329 YNVKQLFRRVAAALPGMDSTENKP 352
NV+++F +A +P +DS KP
Sbjct: 183 TNVQEVFTEIAKTIP-LDSIAPKP 205
>gi|348588935|ref|XP_003480220.1| PREDICTED: ras-related protein Rab-5A-like [Cavia porcellus]
Length = 215
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 15 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEFQES 51
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG F ++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 52 TIGSCFSTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 111
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L
Sbjct: 112 KNWVKELQRQASPNIVIAL----------------------------------------- 130
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNK DL++KR V +E + A++ +++F+ETSAK NV ++
Sbjct: 131 SGNKADLANKRAVDFQEAQSYAEDNSLLFMETSAKTSMNVNEI 173
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 77/114 (67%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A++ +++F+ETSAK NV ++F +A LP
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYAEDNSLLFMETSAKTSMNVNEIFMAIAKKLP 182
>gi|402595096|gb|EJW89022.1| rab family protein 8 [Wuchereria bancrofti]
Length = 209
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 106/206 (51%), Gaps = 46/206 (22%)
Query: 34 MYDSFDNTYQATI-----VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ 88
M S+D ++ + VGKT ++ RF DSF+N++ +TIGIDF +T+ L+ + ++LQ
Sbjct: 1 MAKSYDYLFKLLLIGDSGVGKTCVLFRFSDDSFNNSFISTIGIDFKIRTIELDGKKIKLQ 60
Query: 89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVG 148
+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV M
Sbjct: 61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVDRM--- 117
Query: 149 SIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERK 208
++GNK D+ ++RQVS E GE+
Sbjct: 118 --------------------------------------IIGNKCDIEERRQVSRERGEQL 139
Query: 209 AKELNVMFIETSAKAGYNVKQVRLQL 234
A E F+ETSAKA NV++ L
Sbjct: 140 AIEYGTKFMETSAKANINVEEAFFTL 165
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 75/112 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D+ ++RQVS E GE+ A E F+ETSAKA NV++ F +A
Sbjct: 115 DRMIIGNKCDIEERRQVSRERGEQLAIEYGTKFMETSAKANINVEEAFFTLA 166
>gi|294949450|ref|XP_002786203.1| RAS small GTpases RIC1/ypt1, putative [Perkinsus marinus ATCC
50983]
gi|239900360|gb|EER17999.1| RAS small GTpases RIC1/ypt1, putative [Perkinsus marinus ATCC
50983]
Length = 205
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 105/188 (55%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+ L+ RF D++ +Y +TIG+DF +T+ L+ +TV+LQ+WDTAGQERFR++ SY
Sbjct: 19 VGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYD+T+ SF+ W+ +
Sbjct: 79 RGAHGIIIVYDVTDRESFNNVKHWVQE--------------------------------- 105
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
ID TE +V +LVGNKTDL+ K+ V+ +EG+ A +L V F+ETSAK +N
Sbjct: 106 -----IDKYATE---NVSKLLVGNKTDLTSKKVVTYDEGKELADQLGVPFLETSAKNSHN 157
Query: 227 VKQVRLQL 234
V+Q +++
Sbjct: 158 VEQAFIEM 165
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 81/125 (64%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K V+LQ+WDTAGQERFR++ SY R + ++VYD+T+ SF+ W+ ++ +V
Sbjct: 55 KTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRESFNNVKHWVQEIDKYATENV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+LVGNKTDL+ K+ V+ +EG+ A +L V F+ETSAK +NV+Q F +++ +
Sbjct: 115 SKLLVGNKTDLTSKKVVTYDEGKELADQLGVPFLETSAKNSHNVEQAFIEMSSEIKSRVK 174
Query: 348 TENKP 352
T +P
Sbjct: 175 TAPQP 179
>gi|432858229|ref|XP_004068856.1| PREDICTED: ras-related protein Rab-22A-like [Oryzias latipes]
Length = 194
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 104/208 (50%), Gaps = 47/208 (22%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGKTS++ RF+ DSFD TIG F++KT+ ++ + +WDTAGQERFR+L P
Sbjct: 14 TGVGKTSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPM 73
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R S AV+VYDIT +SF W+ ++R +++
Sbjct: 74 YYRGSAAAVIVYDITKEDSFQTLKNWVKELRQHGPPNIV--------------------- 112
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
+ + GNK DLSD R+VS ++ + A+ ++ +F+ETSAK
Sbjct: 113 --------------------VAIAGNKCDLSDAREVSEKDAKDYAESIHAIFVETSAKNA 152
Query: 225 YNVKQV------RLQLWDTAGQERFRSL 246
N+ +V R+ + D AG +S+
Sbjct: 153 ININEVFTEISKRIPVVDAAGGSSAKSI 180
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 77/118 (65%)
Query: 231 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIM 290
+ +WDTAGQERFR+L P Y R S AV+VYDIT +SF W+ ++R ++++
Sbjct: 55 KFLIWDTAGQERFRALAPMYYRGSAAAVIVYDITKEDSFQTLKNWVKELRQHGPPNIVVA 114
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDST 348
+ GNK DLSD R+VS ++ + A+ ++ +F+ETSAK N+ ++F ++ +P +D+
Sbjct: 115 IAGNKCDLSDAREVSEKDAKDYAESIHAIFVETSAKNAININEVFTEISKRIPVVDAA 172
>gi|198469194|ref|XP_002134246.1| GA26078 [Drosophila pseudoobscura pseudoobscura]
gi|198146758|gb|EDY72873.1| GA26078 [Drosophila pseudoobscura pseudoobscura]
Length = 204
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 107/200 (53%), Gaps = 46/200 (23%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F +T+ +TIGIDF KT+ L + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELRGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF KW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNEKSFENIVKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKR V+ E GE A+E + F+ETSAK+ N
Sbjct: 113 --------------EDVEKMILGNKCDMTDKRVVNKERGEAIAREHGIRFMETSAKSNTN 158
Query: 227 VKQVRLQLWD-----TAGQE 241
+++ +L + T+G+E
Sbjct: 159 IERAFCELAEAILDKTSGKE 178
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 84/131 (64%), Gaps = 6/131 (4%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITN SF KW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL----P 343
M++GNK D++DKR V+ E GE A+E + F+ETSAK+ N+++ F +A A+
Sbjct: 116 EKMILGNKCDMTDKRVVNKERGEAIAREHGIRFMETSAKSNTNIERAFCELAEAILDKTS 175
Query: 344 GMDSTENKPPE 354
G ++ EN PE
Sbjct: 176 GKEAAEN--PE 184
>gi|426254027|ref|XP_004020688.1| PREDICTED: ras-related protein Rab-31 [Ovis aries]
Length = 252
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 97/189 (51%), Gaps = 41/189 (21%)
Query: 42 YQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 101
+Q T VGK+S++ RF+ D FD+ TIG F++KT+ + + +WDTAGQERF SL
Sbjct: 69 FQDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSL 128
Query: 102 IPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHH 161
P Y R S AV+VYDIT +SFH KW+ +++ E G + I+M +
Sbjct: 129 APMYYRGSAAAVIVYDITKQDSFHTLKKWVKELK-EHGPENIVMAI-------------- 173
Query: 162 ANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSA 221
GNK DLSD R+V ++ + A+ + + +ETSA
Sbjct: 174 --------------------------AGNKCDLSDIREVPLKDAKEYAESIGAVVVETSA 207
Query: 222 KAGYNVKQV 230
K N++++
Sbjct: 208 KNAINIEEL 216
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 78/120 (65%)
Query: 231 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIM 290
+ +WDTAGQERF SL P Y R S AV+VYDIT +SFH KW+ +++ ++++
Sbjct: 113 KFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMA 172
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTEN 350
+ GNK DLSD R+V ++ + A+ + + +ETSAK N+++LF+ ++ +P +D EN
Sbjct: 173 IAGNKCDLSDIREVPLKDAKEYAESIGAVVVETSAKNAINIEELFQGISRQIPPLDPHEN 232
>gi|15235981|ref|NP_193450.1| RAB GTPase homolog B1C [Arabidopsis thaliana]
gi|297800394|ref|XP_002868081.1| hypothetical protein ARALYDRAFT_493160 [Arabidopsis lyrata subsp.
lyrata]
gi|75279776|sp|P92963.1|RAB1C_ARATH RecName: Full=Ras-related protein RABB1c; Short=AtRABB1c; AltName:
Full=Ras-related protein Rab2A; Short=AtRab2A
gi|1765896|emb|CAA70498.1| Rab2-like protein [Arabidopsis thaliana]
gi|5281023|emb|CAB45962.1| GTP-binding RAB2A like protein [Arabidopsis thaliana]
gi|7268468|emb|CAB80988.1| GTP-binding RAB2A like protein [Arabidopsis thaliana]
gi|27311815|gb|AAO00873.1| GTP-binding RAB2A like protein [Arabidopsis thaliana]
gi|30023652|gb|AAP13359.1| At4g17170 [Arabidopsis thaliana]
gi|297313917|gb|EFH44340.1| hypothetical protein ARALYDRAFT_493160 [Arabidopsis lyrata subsp.
lyrata]
gi|332658457|gb|AEE83857.1| RAB GTPase homolog B1C [Arabidopsis thaliana]
Length = 211
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 81/115 (70%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQE FRS+ SY R + A++VYDIT +F+ + W++D R +++
Sbjct: 53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANM 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
IML+GNK DL+ +R VSTEEGE+ AKE ++F+E SAK NV++ F + AA +
Sbjct: 113 TIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 101/189 (53%), Gaps = 41/189 (21%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ L+ +F F + TIG++F ++ + ++++ ++LQ+WDTAGQE FRS+ S
Sbjct: 15 TGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRS 74
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R + A++VYDIT +F+ + W++D R +++ IML
Sbjct: 75 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIML------------------ 116
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
+GNK DL+ +R VSTEEGE+ AKE ++F+E SAK
Sbjct: 117 -----------------------IGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA 153
Query: 225 YNVKQVRLQ 233
NV++ ++
Sbjct: 154 QNVEEAFIK 162
>gi|224124750|ref|XP_002329939.1| predicted protein [Populus trichocarpa]
gi|118484431|gb|ABK94092.1| unknown [Populus trichocarpa]
gi|222871961|gb|EEF09092.1| predicted protein [Populus trichocarpa]
Length = 211
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 82/115 (71%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQE FRS+ SY R + A++VYDIT +F+ + W++D R +++
Sbjct: 53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANM 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
IML+GNK+DL+ +R VSTEEGE+ AKE ++F+E SAK NV++ F + AA +
Sbjct: 113 TIMLIGNKSDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 102/189 (53%), Gaps = 41/189 (21%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ L+ +F F + TIG++F ++ + ++++ ++LQ+WDTAGQE FRS+ S
Sbjct: 15 TGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRS 74
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R + A++VYDIT +F+ + W++D R +++ IML
Sbjct: 75 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIML------------------ 116
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
+GNK+DL+ +R VSTEEGE+ AKE ++F+E SAK
Sbjct: 117 -----------------------IGNKSDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA 153
Query: 225 YNVKQVRLQ 233
NV++ ++
Sbjct: 154 QNVEEAFIK 162
>gi|123417386|ref|XP_001305092.1| GTP-binding protein YPTM2 [Trichomonas vaginalis G3]
gi|62869549|gb|AAX97495.1| small Rab GTPase Rab1a [Trichomonas vaginalis]
gi|72537672|gb|AAZ73762.1| small Rab GTPase [Trichomonas vaginalis]
gi|72537674|gb|AAZ73763.1| small Rab GTPase [Trichomonas vaginalis]
gi|121886589|gb|EAX92162.1| GTP-binding protein YPTM2, putative [Trichomonas vaginalis G3]
Length = 202
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 95/184 (51%), Gaps = 42/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+ L+ RF D F + Y +TIG+DF + + L+ ++++LQ+WDTAGQERFR++ SY
Sbjct: 20 VGKSCLLLRFAEDMFSDNYISTIGVDFKIRKIELDGKSIKLQIWDTAGQERFRTITKSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R S VVVYDITN +SF Q W+ ++ DV +L
Sbjct: 80 RGSNGIVVVYDITNRDSFEQVQHWMSEIDNHASQDVCRLL-------------------- 119
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
VGNK DL D R V TEEGE A++ + F+ETSAK N
Sbjct: 120 ---------------------VGNKADLPD-RAVKTEEGEALARQFGIPFMETSAKESLN 157
Query: 227 VKQV 230
V+ +
Sbjct: 158 VENM 161
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 76/115 (66%), Gaps = 1/115 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQERFR++ SY R S VVVYDITN +SF Q W+ ++ DV
Sbjct: 56 KSIKLQIWDTAGQERFRTITKSYYRGSNGIVVVYDITNRDSFEQVQHWMSEIDNHASQDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+LVGNK DL D R V TEEGE A++ + F+ETSAK NV+ +F +A ++
Sbjct: 116 CRLLVGNKADLPD-RAVKTEEGEALARQFGIPFMETSAKESLNVENMFITMATSM 169
>gi|159117831|ref|XP_001709135.1| Rab2b [Giardia lamblia ATCC 50803]
gi|157437250|gb|EDO81461.1| Rab2b [Giardia lamblia ATCC 50803]
Length = 227
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 107/191 (56%), Gaps = 40/191 (20%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-----EDRTVRLQLWDTAGQERFR 99
+ VGK+ L+ RF+ F + T+G++F +KT+ + ++TV++Q+WDTAGQE+FR
Sbjct: 18 SAVGKSCLLLRFVEQKFIPLHDVTVGVEFCNKTLQVPSKDGSEKTVKVQIWDTAGQEQFR 77
Query: 100 SLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVG-SIETNFTHLS 158
S+ SY R + A++VYD+TN +SF W+ D ML G +E + +
Sbjct: 78 SITRSYYRGAAGALLVYDVTNRSSFEALEGWLKD-----------MLAGVGMEASPNGV- 125
Query: 159 FHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIE 218
S ++IMLVGNKTDL KR+VS EEGE+ A++ ++FIE
Sbjct: 126 ----------------------SGMVIMLVGNKTDLEHKRKVSKEEGEQFARDHGLLFIE 163
Query: 219 TSAKAGYNVKQ 229
TSAK NV +
Sbjct: 164 TSAKDDLNVSE 174
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 79/120 (65%), Gaps = 8/120 (6%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG--- 284
K V++Q+WDTAGQE+FRS+ SY R + A++VYD+TN +SF W+ D+ G
Sbjct: 61 KTVKVQIWDTAGQEQFRSITRSYYRGAAGALLVYDVTNRSSFEALEGWLKDMLAGVGMEA 120
Query: 285 -----SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
S ++IMLVGNKTDL KR+VS EEGE+ A++ ++FIETSAK NV + F A
Sbjct: 121 SPNGVSGMVIMLVGNKTDLEHKRKVSKEEGEQFARDHGLLFIETSAKDDLNVSESFNETA 180
>gi|367018094|ref|XP_003658332.1| hypothetical protein MYCTH_2293959 [Myceliophthora thermophila ATCC
42464]
gi|347005599|gb|AEO53087.1| hypothetical protein MYCTH_2293959 [Myceliophthora thermophila ATCC
42464]
Length = 219
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 115/240 (47%), Gaps = 74/240 (30%)
Query: 1 MSSSGDFG-----NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITR 55
M++ G G N +FKLV LGE +VGK+S++ R
Sbjct: 1 MATRGPPGARGMSNRFAQFKLVLLGESAVGKSSIVLR----------------------- 37
Query: 56 FMYDSFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 114
F+ D FD+ ++TIG FL++T+ L E+ TV+ ++WDTAGQER++SL P Y R++ AVV
Sbjct: 38 FVKDQFDSYRESTIGAAFLTQTISLDENTTVKFEIWDTAGQERYKSLAPMYYRNANCAVV 97
Query: 115 VYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDD 174
VYDIT A S + W+ +++ + ++II
Sbjct: 98 VYDITQATSLDKAKSWVKELQRQANENIII------------------------------ 127
Query: 175 VRTERGSDVIIMLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
L GNK DL DKR + T + E A+E ++F ETSAK NV+++
Sbjct: 128 -----------ALAGNKLDLVTEQPDKRAIETADAEAYAREAGLLFFETSAKTAENVQEL 176
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 76/118 (64%), Gaps = 4/118 (3%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT A S + W+ +++ + ++II
Sbjct: 68 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQATSLDKAKSWVKELQRQANENIII 127
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL DKR + T + E A+E ++F ETSAK NV++LF +A LP
Sbjct: 128 ALAGNKLDLVTEQPDKRAIETADAEAYAREAGLLFFETSAKTAENVQELFTAIAKKLP 185
>gi|389632835|ref|XP_003714070.1| GTP-binding protein ypt5 [Magnaporthe oryzae 70-15]
gi|351646403|gb|EHA54263.1| GTP-binding protein ypt5 [Magnaporthe oryzae 70-15]
Length = 221
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 108/225 (48%), Gaps = 69/225 (30%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
N +FKLV LGE +VGK+S++ R F+ D FD+ ++T
Sbjct: 15 NRFAQFKLVLLGESAVGKSSIVLR-----------------------FVKDQFDSYREST 51
Query: 69 IGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
IG FL++T+ L E+ TV+ ++WDTAGQER++SL P Y R++ AVVVYDIT
Sbjct: 52 IGAAFLTQTISLDENTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDIT-------- 103
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
+ S + W+ +++ + ++II L
Sbjct: 104 ---------------------------------QSASLDKAKAWVKELQRQANENIIIAL 130
Query: 188 VGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
GNK DL DKR V T E E A+E ++F ETSAK NV+
Sbjct: 131 AGNKLDLVTEQPDKRAVPTSEAEAYAREAGLLFFETSAKTAENVR 175
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 75/118 (63%), Gaps = 4/118 (3%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT + S + W+ +++ + ++II
Sbjct: 69 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQSASLDKAKAWVKELQRQANENIII 128
Query: 290 MLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL DKR V T E E A+E ++F ETSAK NV+ LF +A LP
Sbjct: 129 ALAGNKLDLVTEQPDKRAVPTSEAEAYAREAGLLFFETSAKTAENVRDLFTAIAKKLP 186
>gi|449443494|ref|XP_004139512.1| PREDICTED: ras-related protein RABB1c-like [Cucumis sativus]
Length = 211
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 81/115 (70%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQE FRS+ SY R + A++VYDIT +F+ + W++D R +++
Sbjct: 53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANM 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
IML+GNK DL+ +R VSTEEGE+ AKE ++F+E SAK NV++ F + AA +
Sbjct: 113 TIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 101/189 (53%), Gaps = 41/189 (21%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ L+ +F F + TIG++F ++ + ++++ ++LQ+WDTAGQE FRS+ S
Sbjct: 15 TGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRS 74
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R + A++VYDIT +F+ + W++D R +++ IML
Sbjct: 75 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIML------------------ 116
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
+GNK DL+ +R VSTEEGE+ AKE ++F+E SAK
Sbjct: 117 -----------------------IGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA 153
Query: 225 YNVKQVRLQ 233
NV++ ++
Sbjct: 154 QNVEEAFIK 162
>gi|390478681|ref|XP_002761905.2| PREDICTED: ras-related protein Rab-8A isoform 1 [Callithrix
jacchus]
Length = 219
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 113/228 (49%), Gaps = 51/228 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ +DV M
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKM--------------------- 117
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
++GNK D++DKRQVS E GE+ A + + F+ETSAKA N
Sbjct: 118 --------------------ILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157
Query: 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 274
V+ L R + D +A +T + HQTS+
Sbjct: 158 VENAFFTLA--------RDIKAKM--DKKLATAPRGVTRESKSHQTSR 195
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 80/127 (62%), Gaps = 1/127 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG-MD 346
M++GNK D++DKRQVS E GE+ A + + F+ETSAKA NV+ F +A + MD
Sbjct: 115 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD 174
Query: 347 STENKPP 353
P
Sbjct: 175 KKLATAP 181
>gi|343427700|emb|CBQ71227.1| probable GTP-binding protein ypt5 [Sporisorium reilianum SRZ2]
Length = 221
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 114/225 (50%), Gaps = 67/225 (29%)
Query: 9 NPLR-KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
NP + +FKLV LGE +VGK+SL+ RF+ D FD+ ++
Sbjct: 7 NPRQLQFKLVLLGESAVGKSSLVL-----------------------RFVKDQFDDYRES 43
Query: 68 TIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 126
TIG FL++T+ L+ +T V+ ++WDTAGQER++SL P Y R++ AVVVYDIT +S +
Sbjct: 44 TIGAAFLTQTVSLDAQTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQPSSLDK 103
Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
WI +++ + ++II
Sbjct: 104 AKAWIRELQRQADPNIII-----------------------------------------A 122
Query: 187 LVGNKTDL-SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
L GNK DL S +R + TEE E+ A+E ++F+ETSAK NV ++
Sbjct: 123 LAGNKADLASTRRAIPTEEAEKYAQEEGLLFLETSAKDSSNVSEL 167
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 78/115 (67%), Gaps = 1/115 (0%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER++SL P Y R++ AVVVYDIT +S + WI +++ + ++II
Sbjct: 62 VKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQPSSLDKAKAWIRELQRQADPNIII 121
Query: 290 MLVGNKTDL-SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL S +R + TEE E+ A+E ++F+ETSAK NV +LF +A LP
Sbjct: 122 ALAGNKADLASTRRAIPTEEAEKYAQEEGLLFLETSAKDSSNVSELFTMIARKLP 176
>gi|255637328|gb|ACU18994.1| unknown [Glycine max]
Length = 211
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 81/115 (70%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQE FRS+ SY R + A++VYDIT +F+ + W++D R +++
Sbjct: 53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANM 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
IML+GNK DL+ +R VSTEEGE+ AKE ++F+E SAK NV++ F + AA +
Sbjct: 113 TIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 101/189 (53%), Gaps = 41/189 (21%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ L+ +F F + TIG++F ++ + ++++ ++LQ+WDTAGQE FRS+ S
Sbjct: 15 TGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRS 74
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R + A++VYDIT +F+ + W++D R +++ IML
Sbjct: 75 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIML------------------ 116
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
+GNK DL+ +R VSTEEGE+ AKE ++F+E SAK
Sbjct: 117 -----------------------IGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA 153
Query: 225 YNVKQVRLQ 233
NV++ ++
Sbjct: 154 QNVEEAFIK 162
>gi|224089509|ref|XP_002308739.1| predicted protein [Populus trichocarpa]
gi|118487262|gb|ABK95459.1| unknown [Populus trichocarpa]
gi|222854715|gb|EEE92262.1| predicted protein [Populus trichocarpa]
Length = 211
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 81/115 (70%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQE FRS+ SY R + A++VYDIT +F+ + W++D R +++
Sbjct: 53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANM 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
IML+GNK DL+ +R VSTEEGE+ AKE ++F+E SAK NV++ F + AA +
Sbjct: 113 TIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 101/189 (53%), Gaps = 41/189 (21%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ L+ +F F + TIG++F ++ + ++++ ++LQ+WDTAGQE FRS+ S
Sbjct: 15 TGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRS 74
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R + A++VYDIT +F+ + W++D R +++ IML
Sbjct: 75 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIML------------------ 116
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
+GNK DL+ +R VSTEEGE+ AKE ++F+E SAK
Sbjct: 117 -----------------------IGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA 153
Query: 225 YNVKQVRLQ 233
NV++ ++
Sbjct: 154 QNVEEAFIK 162
>gi|356555789|ref|XP_003546212.1| PREDICTED: ras-related protein RABB1c-like [Glycine max]
gi|1370176|emb|CAA98165.1| RAB2A [Lotus japonicus]
Length = 211
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 81/115 (70%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQE FRS+ SY R + A++VYDIT +F+ + W++D R +++
Sbjct: 53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANM 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
IML+GNK DL+ +R VSTEEGE+ AKE ++F+E SAK NV++ F + AA +
Sbjct: 113 TIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 167
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 101/189 (53%), Gaps = 41/189 (21%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ L+ +F F + TIG++F ++ + ++++ ++LQ+WDTAGQE FRS+ S
Sbjct: 15 TGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRS 74
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R + A++VYDIT +F+ + W++D R +++ IML
Sbjct: 75 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIML------------------ 116
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
+GNK DL+ +R VSTEEGE+ AKE ++F+E SAK
Sbjct: 117 -----------------------IGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA 153
Query: 225 YNVKQVRLQ 233
NV++ ++
Sbjct: 154 QNVEEAFIK 162
>gi|302698433|ref|XP_003038895.1| hypothetical protein SCHCODRAFT_73684 [Schizophyllum commune H4-8]
gi|300112592|gb|EFJ03993.1| hypothetical protein SCHCODRAFT_73684 [Schizophyllum commune H4-8]
Length = 256
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 101/185 (54%), Gaps = 6/185 (3%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+S++ RF+ D F + TIG FL++ LEDR +R ++WDTAGQERF SL P Y
Sbjct: 25 VGKSSVVLRFVSDEFQPNKEPTIGAAFLTQKCRLEDRVLRYEIWDTAGQERFHSLAPMYY 84
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGS-IETNFTHLSFHHANSF 165
R++ AVVVYDIT A S + W+ +++ + +++I L G+ ++ + S +
Sbjct: 85 RNAQAAVVVYDITKAASLEKAKSWVKELQRQANPNIVIALAGNKVDLVQSAGSSSGGGNS 144
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 225
++ DD G G+ L RQV EE + A E ++F ETSAK G
Sbjct: 145 SESEDEADDATATPGEAAAPD--GSPESL---RQVPREEAQAYATEAGLLFFETSAKTGE 199
Query: 226 NVKQV 230
NV V
Sbjct: 200 NVNTV 204
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 72/151 (47%), Gaps = 37/151 (24%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
+R ++WDTAGQERF SL P Y R++ AVVVYDIT A S + W+ +++ + +++I
Sbjct: 63 LRYEIWDTAGQERFHSLAPMYYRNAQAAVVVYDITKAASLEKAKSWVKELQRQANPNIVI 122
Query: 290 MLVGNKTDLSDK-------------------------------------RQVSTEEGERK 312
L GNK DL RQV EE +
Sbjct: 123 ALAGNKVDLVQSAGSSSGGGNSSESEDEADDATATPGEAAAPDGSPESLRQVPREEAQAY 182
Query: 313 AKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
A E ++F ETSAK G NV +F +A +P
Sbjct: 183 ATEAGLLFFETSAKTGENVNTVFTEIAKKIP 213
>gi|302764578|ref|XP_002965710.1| rab family GTPase [Selaginella moellendorffii]
gi|302779692|ref|XP_002971621.1| rab family GTPase [Selaginella moellendorffii]
gi|300160753|gb|EFJ27370.1| rab family GTPase [Selaginella moellendorffii]
gi|300166524|gb|EFJ33130.1| rab family GTPase [Selaginella moellendorffii]
Length = 210
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 81/115 (70%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQE FRS+ SY R + A++VYDIT +F+ + W++D R S++
Sbjct: 53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANSNM 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
IML+GNK DL+ +R VSTEEGE+ AKE ++F+ETSAK NV++ F A+ +
Sbjct: 113 TIMLIGNKADLAHRRAVSTEEGEQFAKEHGLIFMETSAKTAQNVEEAFINTASKI 167
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 100/186 (53%), Gaps = 41/186 (22%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ L+ +F F + TIG++F ++ + ++++ ++LQ+WDTAGQE FRS+ S
Sbjct: 15 TGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRS 74
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R + A++VYDIT +F+ + W++D R S++ IML
Sbjct: 75 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANSNMTIML------------------ 116
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
+GNK DL+ +R VSTEEGE+ AKE ++F+ETSAK
Sbjct: 117 -----------------------IGNKADLAHRRAVSTEEGEQFAKEHGLIFMETSAKTA 153
Query: 225 YNVKQV 230
NV++
Sbjct: 154 QNVEEA 159
>gi|308805729|ref|XP_003080176.1| YptC4 (ISS) [Ostreococcus tauri]
gi|116058636|emb|CAL54343.1| YptC4 (ISS) [Ostreococcus tauri]
Length = 215
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 79/115 (68%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
KQV+LQ+WDTAGQE FRS+ SY R + A++VYD+T +F S W+ D R ++
Sbjct: 53 KQVKLQIWDTAGQESFRSITRSYYRGAAGALLVYDVTRRETFDNLSSWLQDCRANANHNM 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+IMLVGNK+D+S +R VSTEEGE A+E ++F+ETSAK+ + V F A A+
Sbjct: 113 VIMLVGNKSDVSHRRAVSTEEGEMFARENGLLFVETSAKSAFGVDDAFVATAGAV 167
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 94/183 (51%), Gaps = 41/183 (22%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ L+ +F F + TIG++F S+ + + V+LQ+WDTAGQE FRS+ S
Sbjct: 15 TGVGKSCLLLQFTDQRFQLVHDLTIGVEFGSRMVTAGGKQVKLQIWDTAGQESFRSITRS 74
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R + A++VYD+T +F S W+ D R +++IML
Sbjct: 75 YYRGAAGALLVYDVTRRETFDNLSSWLQDCRANANHNMVIML------------------ 116
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
VGNK+D+S +R VSTEEGE A+E ++F+ETSAK+
Sbjct: 117 -----------------------VGNKSDVSHRRAVSTEEGEMFARENGLLFVETSAKSA 153
Query: 225 YNV 227
+ V
Sbjct: 154 FGV 156
>gi|253743957|gb|EET00230.1| Rab2b [Giardia intestinalis ATCC 50581]
Length = 227
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 107/191 (56%), Gaps = 40/191 (20%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-----EDRTVRLQLWDTAGQERFR 99
+ VGK+ L+ RF+ F + T+G++F +KT+ + ++T+++Q+WDTAGQE+FR
Sbjct: 18 SAVGKSCLLLRFVEQKFIPLHDVTVGVEFCNKTLQVPSKDGSEKTIKVQIWDTAGQEQFR 77
Query: 100 SLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVG-SIETNFTHLS 158
S+ SY R + A++VYD+TN +SF W+ D ML G +E + +
Sbjct: 78 SITRSYYRGAAGALLVYDVTNRSSFEALEGWLKD-----------MLAGVGMEASPNGV- 125
Query: 159 FHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIE 218
S ++IMLVGNKTDL KR+VS EEGE+ A++ ++FIE
Sbjct: 126 ----------------------SGMVIMLVGNKTDLEHKRKVSREEGEQFARDHGLLFIE 163
Query: 219 TSAKAGYNVKQ 229
TSAK NV +
Sbjct: 164 TSAKDNLNVSE 174
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 81/123 (65%), Gaps = 8/123 (6%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG--- 284
K +++Q+WDTAGQE+FRS+ SY R + A++VYD+TN +SF W+ D+ G
Sbjct: 61 KTIKVQIWDTAGQEQFRSITRSYYRGAAGALLVYDVTNRSSFEALEGWLKDMLAGVGMEA 120
Query: 285 -----SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
S ++IMLVGNKTDL KR+VS EEGE+ A++ ++FIETSAK NV + F A
Sbjct: 121 SPNGVSGMVIMLVGNKTDLEHKRKVSREEGEQFARDHGLLFIETSAKDNLNVSESFNETA 180
Query: 340 AAL 342
A+
Sbjct: 181 RAI 183
>gi|348511330|ref|XP_003443197.1| PREDICTED: ras-related protein Rab-5A-like [Oreochromis niloticus]
Length = 216
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFVRA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALAG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR + ++ + A + +++F+ETSAK NV ++
Sbjct: 134 --NKADLANKRALDFQDAQSYADDNSLLFMETSAKTSMNVNEI 174
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFVRAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR + ++ + A + +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALAGNKADLANKRALDFQDAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 183
>gi|395857349|ref|XP_003801059.1| PREDICTED: ras-related protein Rab-31 [Otolemur garnettii]
Length = 207
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 97/189 (51%), Gaps = 41/189 (21%)
Query: 42 YQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 101
+Q T VGK+S++ RF+ D FD+ TIG F++KT+ + + +WDTAGQERF SL
Sbjct: 24 FQDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSL 83
Query: 102 IPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHH 161
P Y R S AV+VYDIT +SFH KW+ +++ E G + I+M +
Sbjct: 84 APMYYRGSAAAVIVYDITKQDSFHTLKKWVKELK-EHGPENIVMAI-------------- 128
Query: 162 ANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSA 221
GNK DLSD R+V ++ + A+ + + +ETSA
Sbjct: 129 --------------------------AGNKCDLSDIREVPLKDAKEYAESIGALVVETSA 162
Query: 222 KAGYNVKQV 230
K N++++
Sbjct: 163 KNAINIEEL 171
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 78/120 (65%)
Query: 231 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIM 290
+ +WDTAGQERF SL P Y R S AV+VYDIT +SFH KW+ +++ ++++
Sbjct: 68 KFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMA 127
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTEN 350
+ GNK DLSD R+V ++ + A+ + + +ETSAK N+++LF+ ++ +P +D EN
Sbjct: 128 IAGNKCDLSDIREVPLKDAKEYAESIGALVVETSAKNAINIEELFQGISRRIPPLDPHEN 187
>gi|224142139|ref|XP_002324416.1| predicted protein [Populus trichocarpa]
gi|222865850|gb|EEF02981.1| predicted protein [Populus trichocarpa]
Length = 199
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 103/204 (50%), Gaps = 48/204 (23%)
Query: 34 MYDSFDNTYQATIV-------GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVR 86
M + N QA +V GKTSL+ RF+ F ++TIG F ++ + L + T++
Sbjct: 1 MARTGSNNIQAKLVLLGDMGTGKTSLVLRFVKGQFLEFQESTIGAAFFTQVLSLNEATIK 60
Query: 87 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIML 146
+WDTAGQER+ SL P Y R + AVVVYDIT+ +SF + KW+ +++ + ++I+ L
Sbjct: 61 FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVTELQRQGNPNLIMFL 120
Query: 147 VGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGE 206
VGNK DL KR+V EEGE
Sbjct: 121 -----------------------------------------VGNKVDLQQKRKVGIEEGE 139
Query: 207 RKAKELNVMFIETSAKAGYNVKQV 230
+ AKE ++F+ETSAK NV ++
Sbjct: 140 QYAKENGMVFLETSAKTAQNVNEL 163
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 79/117 (67%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N ++ +WDTAGQER+ SL P Y R + AVVVYDIT+ +SF + KW+ +++ +
Sbjct: 55 NEATIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVTELQRQGNP 114
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
++I+ LVGNK DL KR+V EEGE+ AKE ++F+ETSAK NV +LF +A L
Sbjct: 115 NLIMFLVGNKVDLQQKRKVGIEEGEQYAKENGMVFLETSAKTAQNVNELFYEIAKRL 171
>gi|219111761|ref|XP_002177632.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410517|gb|EEC50446.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 201
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 98/193 (50%), Gaps = 41/193 (21%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ L+ RF+ D F + TIG FL++T+ L+D TV+ ++WDTAGQER+RSL P
Sbjct: 24 TAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVQLDDATVKFEIWDTAGQERYRSLAPM 83
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R ++ A+VVYDITN +SF W+ +++ +V+I L G
Sbjct: 84 YYRGASAAIVVYDITNPDSFTGAKSWVKELQRRGDPNVVIALAG---------------- 127
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
NK DL +R V EE A+E ++ +ETSAK
Sbjct: 128 -------------------------NKADLETRRAVEFEEANAYAQENGILHLETSAKNA 162
Query: 225 YNVKQVRLQLWDT 237
NVK + +++ T
Sbjct: 163 NNVKSLFIEIAKT 175
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 73/114 (64%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+RSL P Y R ++ A+VVYDITN +SF W+ +++ +V+I
Sbjct: 64 VKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNPDSFTGAKSWVKELQRRGDPNVVI 123
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL +R V EE A+E ++ +ETSAK NVK LF +A LP
Sbjct: 124 ALAGNKADLETRRAVEFEEANAYAQENGILHLETSAKNANNVKSLFIEIAKTLP 177
>gi|159473897|ref|XP_001695070.1| small rab-related GTPase [Chlamydomonas reinhardtii]
gi|158276449|gb|EDP02222.1| small rab-related GTPase [Chlamydomonas reinhardtii]
Length = 213
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 80/112 (71%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
KQ++LQ+WDTAGQE FRS+ SY R + A++VYDIT +F+ + W++D R ++
Sbjct: 53 KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNM 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
IML+GNK DL+ +R V+TEEGE+ AKE ++F+ETSA+ +NV++ F A
Sbjct: 113 TIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTA 164
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 99/186 (53%), Gaps = 41/186 (22%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ L+ +F F + TIG++F ++ + ++ + ++LQ+WDTAGQE FRS+ S
Sbjct: 15 TGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRS 74
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R + A++VYDIT +F+ + W++D R ++ IML+
Sbjct: 75 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLI----------------- 117
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
GNK DL+ +R V+TEEGE+ AKE ++F+ETSA+
Sbjct: 118 ------------------------GNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTA 153
Query: 225 YNVKQV 230
+NV++
Sbjct: 154 HNVEEA 159
>gi|45383121|ref|NP_989856.1| ras-related protein Rab-5C [Gallus gallus]
gi|326934183|ref|XP_003213173.1| PREDICTED: ras-related protein Rab-5C-like [Meleagris gallopavo]
gi|82246551|sp|Q98932.1|RAB5C_CHICK RecName: Full=Ras-related protein Rab-5C; AltName: Full=Rab5C-like
protein
gi|1531769|emb|CAA69142.1| rab5C-like protein [Gallus gallus]
gi|449267489|gb|EMC78432.1| Ras-related protein Rab-5C [Columba livia]
Length = 216
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEYQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALAG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL+ KR V ++ + A + +++F+ETSAK NV ++
Sbjct: 134 --NKADLATKRAVDFQDAQTYADDNSLLFMETSAKTAMNVNEI 174
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 80/123 (65%), Gaps = 1/123 (0%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
L GNK DL+ KR V ++ + A + +++F+ETSAK NV ++F +A LP + +
Sbjct: 130 ALAGNKADLATKRAVDFQDAQTYADDNSLLFMETSAKTAMNVNEIFMAIAKKLP-KNEPQ 188
Query: 350 NKP 352
N P
Sbjct: 189 NAP 191
>gi|2500074|sp|Q39570.1|YPTC4_CHLRE RecName: Full=GTP-binding protein YPTC4
gi|806722|gb|AAA82726.1| YptC4 [Chlamydomonas reinhardtii]
Length = 213
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 80/112 (71%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
KQ++LQ+WDTAGQE FRS+ SY R + A++VYDIT +F+ + W++D R ++
Sbjct: 53 KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNM 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
IML+GNK DL+ +R V+TEEGE+ AKE ++F+ETSA+ +NV++ F A
Sbjct: 113 TIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTA 164
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 99/186 (53%), Gaps = 41/186 (22%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ L+ +F F + TIG++F ++ + ++ + ++LQ+WDTAGQE FRS+ S
Sbjct: 15 TGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRS 74
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R + A++VYDIT +F+ + W++D R ++ IML+
Sbjct: 75 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLI----------------- 117
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
GNK DL+ +R V+TEEGE+ AKE ++F+ETSA+
Sbjct: 118 ------------------------GNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTA 153
Query: 225 YNVKQV 230
+NV++
Sbjct: 154 HNVEEA 159
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,105,611,252
Number of Sequences: 23463169
Number of extensions: 193597711
Number of successful extensions: 638090
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 15987
Number of HSP's successfully gapped in prelim test: 5609
Number of HSP's that attempted gapping in prelim test: 554435
Number of HSP's gapped (non-prelim): 71004
length of query: 355
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 212
effective length of database: 9,003,962,200
effective search space: 1908839986400
effective search space used: 1908839986400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 77 (34.3 bits)