BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15725
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 300 bits (769), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 162/228 (71%), Positives = 163/228 (71%), Gaps = 64/228 (28%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
SSGDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDSFD
Sbjct: 4 SSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFD 40
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN N
Sbjct: 41 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTN 100
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SFHQTSKWIDDVRTERGSDVIIML
Sbjct: 101 SFHQTSKWIDDVRTERGSDVIIML------------------------------------ 124
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 125 -----VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 167
Score = 240 bits (613), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 116/119 (97%), Positives = 117/119 (98%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSFHQTSKWIDDVRTERGSDV
Sbjct: 61 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDV 120
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD
Sbjct: 121 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 179
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 292 bits (748), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 157/230 (68%), Positives = 161/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 4 MSTGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 40
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG ERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 41 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITN 100
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 101 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 126
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 127 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 169
Score = 236 bits (603), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 114/128 (89%), Positives = 121/128 (94%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAG ERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 63 RTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 123 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 182
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 183 TQDRSRED 190
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 289 bits (740), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 154/230 (66%), Positives = 159/230 (69%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAG ERFRSLIPSYIRDS AVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 233 bits (594), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 111/128 (86%), Positives = 119/128 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAG ERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 180 TQDRSRED 187
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 281 bits (719), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 152/223 (68%), Positives = 155/223 (69%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GNPLRKFKLVFLGEQSVGKTSL ITRFMYDSFDNTYQA
Sbjct: 1 GNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDNTYQA 37
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIGIDFLSKTMYLEDRTVRLQLWDTAG ERFRSLIPSYIRDSTVAVVVYDITN NSF QT
Sbjct: 38 TIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQT 97
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
+KWIDDVRTERGSDVIIML
Sbjct: 98 TKWIDDVRTERGSDVIIML----------------------------------------- 116
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 117 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 159
Score = 237 bits (605), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 114/128 (89%), Positives = 121/128 (94%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAG ERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 53 RTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 113 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 172
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 173 TQDRSRED 180
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 278 bits (712), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 149/223 (66%), Positives = 154/223 (69%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G+PLRKFKLVFLGEQSVGKTSL ITRFMYDSFDNTYQA
Sbjct: 1 GSPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDNTYQA 37
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT
Sbjct: 38 TIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQT 97
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
+KWIDDVRTERGSDVIIML
Sbjct: 98 TKWIDDVRTERGSDVIIML----------------------------------------- 116
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 117 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 159
Score = 228 bits (580), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 108/118 (91%), Positives = 112/118 (94%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 53 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM
Sbjct: 113 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 170
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 272 bits (696), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 148/218 (67%), Positives = 151/218 (69%), Gaps = 64/218 (29%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
KFKLVFLGEQSVGKTSL ITRFMYDSFDNTYQATIGID
Sbjct: 1 KFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDNTYQATIGID 37
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWID
Sbjct: 38 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWID 97
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
DVRTERGSDVIIML VGNKT
Sbjct: 98 DVRTERGSDVIIML-----------------------------------------VGNKT 116
Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
DL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 117 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 154
Score = 223 bits (569), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 108/115 (93%), Positives = 111/115 (96%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 48 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 107
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL
Sbjct: 108 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 265 bits (676), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 143/218 (65%), Positives = 150/218 (68%), Gaps = 64/218 (29%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
KFKLVFLGEQSVGKTSL ITRFMYDSFDNTYQATIGID
Sbjct: 2 KFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDNTYQATIGID 38
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWID
Sbjct: 39 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWID 98
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
DVRTERGSDVIIML VGNKT
Sbjct: 99 DVRTERGSDVIIML-----------------------------------------VGNKT 117
Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
DL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQ+
Sbjct: 118 DLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQL 155
Score = 214 bits (546), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 102/115 (88%), Positives = 110/115 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 49 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 108
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
IIMLVGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQLFRRVA+AL
Sbjct: 109 IIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL 163
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 112/216 (51%), Positives = 129/216 (59%), Gaps = 64/216 (29%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
K+KLVFLGEQ+VGKTS+I TRF YD+FDN YQ+TIGID
Sbjct: 1 KYKLVFLGEQAVGKTSII-----------------------TRFXYDTFDNNYQSTIGID 37
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
FLSKT+YL++ VRLQLWDTAGQERFRSLIPSYIRDS A+VVYDITN SF T+KWI
Sbjct: 38 FLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQ 97
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
D+ ERG DVII L VGNKT
Sbjct: 98 DILNERGKDVIIAL-----------------------------------------VGNKT 116
Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
DL D R+V+ EEG +KA+E N F ETSAKAG+N+K
Sbjct: 117 DLGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIK 152
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/113 (69%), Positives = 91/113 (80%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
VRLQLWDTAGQERFRSLIPSYIRDS A+VVYDITN SF T+KWI D+ ERG DVII
Sbjct: 50 VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVII 109
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
LVGNKTDL D R+V+ EEG +KA+E N F ETSAKAG+N+K LF++ A+ L
Sbjct: 110 ALVGNKTDLGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 64/227 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE ++VGK+SL+ RF+ F ++
Sbjct: 1 GNKICQFKLVLLGE-----------------------SLVGKSSLVLRFVKGQFHEFQES 37
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 38 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 97
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 98 KNWVKELQRQASPNIVIALSG--------------------------------------- 118
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NK DL++KR V +E + A + +++F+ETSAK NV ++ + +
Sbjct: 119 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 114
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 111/227 (48%), Gaps = 64/227 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 2 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 38
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 39 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 98
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 99 KNWVKELQRQASPNIVIALSG--------------------------------------- 119
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NK DL++KR V +E + A + +++F+ETSAK NV ++ + +
Sbjct: 120 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 164
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 56 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 115
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 116 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 169
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 111/227 (48%), Gaps = 64/227 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 1 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 37
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 38 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 97
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 98 KNWVKELQRQASPNIVIALSG--------------------------------------- 118
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NK DL++KR V +E + A + +++F+ETSAK NV ++ + +
Sbjct: 119 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 114
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 124 bits (311), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA++
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIE------------------------EHASA-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAKA N
Sbjct: 113 ---------------DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
V+ L
Sbjct: 158 VENAFFTL 165
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 76/112 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E GE+ A + + F+ETSAKA NV+ F +A
Sbjct: 115 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 124 bits (311), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 111/227 (48%), Gaps = 64/227 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 1 GNKICQFKLVLLGE-----------------------SPVGKSSLVLRFVKGQFHEFQES 37
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 38 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 97
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 98 KNWVKELQRQASPNIVIALSG--------------------------------------- 118
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NK DL++KR V +E + A + +++F+ETSAK NV ++ + +
Sbjct: 119 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 114
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 108/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 2 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 38
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 39 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARA 98
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 99 KNWVKELQRQASPNIVIALSG--------------------------------------- 119
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F ETSAK NV ++
Sbjct: 120 --NKADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEI 160
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 75/114 (65%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 56 VKFEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 115
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F ETSAK NV ++F +A LP
Sbjct: 116 ALSGNKADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLP 169
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 17 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 76
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA++
Sbjct: 77 RGAMGIMLVYDITNEKSFDNIRNWIRNIE------------------------EHASA-- 110
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAKA N
Sbjct: 111 ---------------DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 155
Query: 227 VKQVRLQL 234
V+ L
Sbjct: 156 VENAFFTL 163
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 76/112 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 53 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E GE+ A + + F+ETSAKA NV+ F +A
Sbjct: 113 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 164
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 64/227 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE VGK+SL+ RF+ F ++
Sbjct: 1 GNKICQFKLVLLGESEVGKSSLVL-----------------------RFVKGQFHEFQES 37
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 38 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 97
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 98 KNWVKELQRQASPNIVIALSG--------------------------------------- 118
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NK DL++KR V +E + A + +++F+ETSAK NV ++ + +
Sbjct: 119 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 114
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 64/227 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE VGK+SL+ RF+ F ++
Sbjct: 1 GNKICQFKLVLLGESKVGKSSLVL-----------------------RFVKGQFHEFQES 37
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 38 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 97
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 98 KNWVKELQRQASPNIVIALSG--------------------------------------- 118
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NK DL++KR V +E + A + +++F+ETSAK NV ++ + +
Sbjct: 119 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 114
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 64/227 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE VGK+SL+ RF+ F ++
Sbjct: 1 GNKICQFKLVLLGESRVGKSSLVL-----------------------RFVKGQFHEFQES 37
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 38 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 97
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 98 KNWVKELQRQASPNIVIALSG--------------------------------------- 118
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NK DL++KR V +E + A + +++F+ETSAK NV ++ + +
Sbjct: 119 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 114
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 120 bits (302), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 82/121 (67%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A++V+D+TN SF + KW+ +++ + ++++
Sbjct: 61 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVM 120
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
L GNK+DL D R+V+ E+ + A+E + F+ETSAK NVK++F +A LP + TE
Sbjct: 121 ALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTE 180
Query: 350 N 350
N
Sbjct: 181 N 181
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 97/184 (52%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
GK+SL+ RF+ D F ++TIG F S+T+ + D TV+ ++WDTAGQER+ SL P Y
Sbjct: 23 AGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 82
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + A++V+D+TN SF + KW+ +++ + +++
Sbjct: 83 RGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMV----------------------- 119
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+ L GNK+DL D R+V+ E+ + A+E + F+ETSAK N
Sbjct: 120 ------------------MALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATN 161
Query: 227 VKQV 230
VK++
Sbjct: 162 VKEI 165
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 109/224 (48%), Gaps = 64/224 (28%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+ +FKLV LGE +VGK+SL+ RF+ F ++TIG
Sbjct: 1 ICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEYQESTIG 37
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W
Sbjct: 38 AAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNW 97
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
+ +++ + +++I L G N
Sbjct: 98 VKELQRQASPNIVIALAG-----------------------------------------N 116
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
K DL+ KR V +E + A + +++F+ETSAK NV ++ + +
Sbjct: 117 KADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 160
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 75/113 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 52 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 111
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
L GNK DL+ KR V +E + A + +++F+ETSAK NV ++F +A L
Sbjct: 112 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 99/183 (54%), Gaps = 41/183 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+ L+ RF D++ ++Y +TIG+DF +T+ LE++TV+LQ+WDTAGQERFR++ SY
Sbjct: 20 VGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQERFRTITSSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYD+T+ +SF +WI ++ + + N
Sbjct: 80 RGAHGIIIVYDVTDRDSFDNVKQWIQEI--------------------DRYAMENVNK-- 117
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+LVGNK DL KR V+++EG A + FIETSAK YN
Sbjct: 118 -------------------LLVGNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYN 158
Query: 227 VKQ 229
V+Q
Sbjct: 159 VEQ 161
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 74/116 (63%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K V+LQ+WDTAGQERFR++ SY R + ++VYD+T+ +SF +WI ++ +V
Sbjct: 56 KTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
+LVGNK DL KR V+++EG A + FIETSAK YNV+Q F +A +
Sbjct: 116 NKLLVGNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIK 171
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 79/108 (73%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
KQ++LQ+WDTAGQE FRS+ SY R + A++VYDIT ++F+ + W++D R S++
Sbjct: 57 KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNM 116
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
+IML+GNK+DL +R+V EEGE A+E ++F+ETSAK NV++ F
Sbjct: 117 VIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 164
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 99/186 (53%), Gaps = 41/186 (22%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ L+ +F F + TIG++F ++ + ++ + ++LQ+WDTAGQE FRS+ S
Sbjct: 19 TGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRS 78
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R + A++VYDIT ++F+ + W++D R S+++IML
Sbjct: 79 YYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIML------------------ 120
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
+GNK+DL +R+V EEGE A+E ++F+ETSAK
Sbjct: 121 -----------------------IGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTA 157
Query: 225 YNVKQV 230
NV++
Sbjct: 158 SNVEEA 163
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 107/224 (47%), Gaps = 64/224 (28%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+ +FKLV LGE +VGK+SL+ RF+ F ++TIG
Sbjct: 6 ICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEYQESTIG 42
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
FL++++ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN +F + W
Sbjct: 43 AAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTW 102
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
+ +++ + ++I L GN
Sbjct: 103 VKELQRQASPSIVI-----------------------------------------ALAGN 121
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
K DL++KR V EE + A + +++F+ETSAK NV + L +
Sbjct: 122 KADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAI 165
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 74/114 (64%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN +F + W+ +++ + ++I
Sbjct: 57 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVI 116
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V EE + A + +++F+ETSAK NV LF +A LP
Sbjct: 117 ALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLP 170
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 109/226 (48%), Gaps = 64/226 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
N + +FKLV LGE +VGK+SL+ RF+ F ++T
Sbjct: 1 NKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQEST 37
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IG FL++T+ L+D TV+ ++WDTAG ER+ SL P Y R + A+VVYDITN SF +
Sbjct: 38 IGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAK 97
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
W+ +++ + +++I L G
Sbjct: 98 NWVKELQRQASPNIVIALSG---------------------------------------- 117
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
NK DL++KR V +E + A + +++F+ETSAK NV ++ + +
Sbjct: 118 -NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 162
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 75/114 (65%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAG ER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 54 VKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 113
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 114 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 167
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 77/108 (71%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
KQ++LQ+WDTAGQE FRS+ SY R + A++VYDIT +F+ + W++D R S++
Sbjct: 68 KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNM 127
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
+IML+GNK+DL +R V EEGE A+E ++F+ETSAK NV++ F
Sbjct: 128 VIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 97/186 (52%), Gaps = 41/186 (22%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+ L+ +F F + TIG++F ++ + ++ + ++LQ+WDTAGQE FRS+ S
Sbjct: 30 TGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRS 89
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R + A++VYDIT +F+ + W++D R S+++IML
Sbjct: 90 YYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIML------------------ 131
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
+GNK+DL +R V EEGE A+E ++F+ETSAK
Sbjct: 132 -----------------------IGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTA 168
Query: 225 YNVKQV 230
NV++
Sbjct: 169 CNVEEA 174
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 117 bits (294), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 108/224 (48%), Gaps = 64/224 (28%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+ +FKLV LGE +VGK+SL+ RF+ F ++TIG
Sbjct: 3 ICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEYQESTIG 39
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
FL++T+ L+D TV+ ++WDTAG ER+ SL P Y R + A+VVYDITN ++F + W
Sbjct: 40 AAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNW 99
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
+ +++ + +++I L G N
Sbjct: 100 VKELQRQASPNIVIALAG-----------------------------------------N 118
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
K DL+ KR V +E + A + +++F+ETSAK NV ++ + +
Sbjct: 119 KADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 162
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 75/114 (65%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAG ER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 54 VKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 113
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL+ KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 114 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLP 167
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 108/224 (48%), Gaps = 64/224 (28%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+ +FKLV LGE +VGK+SL+ RF+ F ++TI
Sbjct: 3 ICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEYQESTIQ 39
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W
Sbjct: 40 AAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNW 99
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
+ +++ + +++I L G N
Sbjct: 100 VKELQRQASPNIVIALAG-----------------------------------------N 118
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
K DL+ KR V +E + A + +++F+ETSAK NV ++ + +
Sbjct: 119 KADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 162
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 75/113 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 54 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 113
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
L GNK DL+ KR V +E + A + +++F+ETSAK NV ++F +A L
Sbjct: 114 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 97/191 (50%), Gaps = 44/191 (23%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+S++ RF+ + F + TIG FL++ + + + TV+ ++WDTAGQERF SL P Y
Sbjct: 14 VGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYY 73
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R++ A+VVYD+T SF + W+ ++ + D+II L
Sbjct: 74 RNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIAL-------------------- 113
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDL---SDKRQVSTEEGERKAKELNVMFIETSAKA 223
VGNK D +R+V+ EEGE+ A+E ++F ETSAK
Sbjct: 114 ---------------------VGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKT 152
Query: 224 GYNVKQVRLQL 234
G NV V L +
Sbjct: 153 GENVNDVFLGI 163
Score = 114 bits (285), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 87/149 (58%), Gaps = 5/149 (3%)
Query: 198 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVA 257
R VS + E K + F+ + + N V+ ++WDTAGQERF SL P Y R++ A
Sbjct: 22 RFVSNDFAENKEPTIGAAFL--TQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAA 79
Query: 258 VVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL---SDKRQVSTEEGERKAK 314
+VVYD+T SF + W+ ++ + D+II LVGNK D +R+V+ EEGE+ A+
Sbjct: 80 LVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAE 139
Query: 315 ELNVMFIETSAKAGYNVKQLFRRVAAALP 343
E ++F ETSAK G NV +F + +P
Sbjct: 140 EKGLLFFETSAKTGENVNDVFLGIGEKIP 168
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 95/186 (51%), Gaps = 41/186 (22%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+S++ RF+ D FD+ TIG F++KT+ + + +WDTAGQERF SL P
Sbjct: 32 TGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPM 91
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R S AV+VYDIT +SF+ KW+ +++ E G + I+M +
Sbjct: 92 YYRGSAAAVIVYDITKQDSFYTLKKWVKELK-EHGPENIVMAIA---------------- 134
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
GNK DLSD R+V ++ + A+ + + +ETSAK
Sbjct: 135 ------------------------GNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNA 170
Query: 225 YNVKQV 230
N++++
Sbjct: 171 INIEEL 176
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 78/120 (65%)
Query: 231 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIM 290
+ +WDTAGQERF SL P Y R S AV+VYDIT +SF+ KW+ +++ ++++
Sbjct: 73 KFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMA 132
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTEN 350
+ GNK DLSD R+V ++ + A+ + + +ETSAK N+++LF+ ++ +P +D EN
Sbjct: 133 IAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHEN 192
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 114 bits (285), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 81/116 (69%), Gaps = 1/116 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+V+LQ+WDTAGQERFR++ SY R + A++ YDIT +SF WI+DVR GS++
Sbjct: 76 KRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNI 135
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF-IETSAKAGYNVKQLFRRVAAAL 342
+ +L+GNK+DLS+ R+VS E + A+ +++ IETSAK NV++ F RVA L
Sbjct: 136 VQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 100/189 (52%), Gaps = 42/189 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF +F +TIG+DF KT+ ++ + V+LQ+WDTAGQERFR++ SY
Sbjct: 40 VGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYY 99
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + A++ YDIT +SF WI+DVR GS+++ +L
Sbjct: 100 RSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLL-------------------- 139
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF-IETSAKAGY 225
+GNK+DLS+ R+VS E + A+ +++ IETSAK
Sbjct: 140 ---------------------IGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSS 178
Query: 226 NVKQVRLQL 234
NV++ L++
Sbjct: 179 NVEEAFLRV 187
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 83/126 (65%), Gaps = 1/126 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K V+LQ+WDTAGQERFRS+ SY R + A++VYDIT+ +++ + W+ D RT ++
Sbjct: 72 KTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNI 131
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA-AALPGMD 346
+++L GNK DL +R+V+ E R A+E +MF+ETSA G NV++ F + A L +D
Sbjct: 132 VVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKID 191
Query: 347 STENKP 352
S E P
Sbjct: 192 SGELDP 197
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 41/187 (21%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GK+ L+ +F+ + F TIG++F S+ + + +TV+LQ+WDTAGQERFRS+ SY R
Sbjct: 37 GKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYR 96
Query: 108 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ 167
+ A++VYDIT+ +++ + W+ D RT +++++
Sbjct: 97 GAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVI---------------------- 134
Query: 168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 227
L GNK DL +R+V+ E R A+E +MF+ETSA G NV
Sbjct: 135 -------------------LCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENV 175
Query: 228 KQVRLQL 234
++ L+
Sbjct: 176 EEAFLKC 182
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 95/195 (48%), Gaps = 41/195 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTS + R+ DSF + +T+GIDF KT+Y D+ ++LQ+WDTAGQER+R++ +Y
Sbjct: 33 VGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYY 92
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + +++YDI N SF W ++T + ++L
Sbjct: 93 RGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVIL-------------------- 132
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
VGNK DL D+R V E+G R A +L F E SAK N
Sbjct: 133 ---------------------VGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENIN 171
Query: 227 VKQVRLQLWDTAGQE 241
VKQV +L D ++
Sbjct: 172 VKQVFERLVDVICEK 186
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 70/111 (63%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQER+R++ +Y R + +++YDI N SF W ++T +
Sbjct: 69 KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNA 128
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
++LVGNK DL D+R V E+G R A +L F E SAK NVKQ+F R+
Sbjct: 129 QVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERL 179
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 99/191 (51%), Gaps = 42/191 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTSL+ RF D+F ++T+G+DF KT+ L + +RLQ+WDTAGQERF S+ +Y
Sbjct: 37 VGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYY 96
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDIT +F KW+
Sbjct: 97 RSAKGIILVYDITKKETFDDLPKWM----------------------------------- 121
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGY 225
K ID +E D ++LVGNK D R+++ ++GE+ A+++ M F E SAK +
Sbjct: 122 ---KMIDKYASE---DAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNF 175
Query: 226 NVKQVRLQLWD 236
NV ++ L+L D
Sbjct: 176 NVDEIFLKLVD 186
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 71/112 (63%), Gaps = 1/112 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K++RLQ+WDTAGQERF S+ +Y R + ++VYDIT +F KW+ + D
Sbjct: 73 KKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDA 132
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQLFRRV 338
++LVGNK D R+++ ++GE+ A+++ M F E SAK +NV ++F ++
Sbjct: 133 ELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 184
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 98/188 (52%), Gaps = 42/188 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+ L+ RF+ D F+ ++ TIGIDF KT+ + + V+LQLWDTAGQERFR++ +Y
Sbjct: 31 VGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYY 90
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYD+T+ +F +W V HAN
Sbjct: 91 RGAMGIILVYDVTDERTFTNIKQWFKTVN------------------------EHANDEA 126
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
Q ++LVGNK+D+ + R V+ ++GE AKEL + FIE+SAK N
Sbjct: 127 Q-----------------LLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDN 168
Query: 227 VKQVRLQL 234
V ++ L
Sbjct: 169 VNEIFFTL 176
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 75/114 (65%), Gaps = 1/114 (0%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N K+V+LQLWDTAGQERFR++ +Y R + ++VYD+T+ +F +W V
Sbjct: 65 NGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND 124
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
+ ++LVGNK+D+ + R V+ ++GE AKEL + FIE+SAK NV ++F +A
Sbjct: 125 EAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 177
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 98/188 (52%), Gaps = 42/188 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+ L+ RF+ D F+ ++ TIGIDF KT+ + + V+LQLWDTAGQERFR++ +Y
Sbjct: 18 VGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYY 77
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYD+T+ +F +W V HAN
Sbjct: 78 RGAMGIILVYDVTDERTFTNIKQWFKTVN------------------------EHANDEA 113
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
Q ++LVGNK+D+ + R V+ ++GE AKEL + FIE+SAK N
Sbjct: 114 Q-----------------LLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDN 155
Query: 227 VKQVRLQL 234
V ++ L
Sbjct: 156 VNEIFFTL 163
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 75/114 (65%), Gaps = 1/114 (0%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N K+V+LQLWDTAGQERFR++ +Y R + ++VYD+T+ +F +W V
Sbjct: 52 NGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND 111
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
+ ++LVGNK+D+ + R V+ ++GE AKEL + FIE+SAK NV ++F +A
Sbjct: 112 EAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 164
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 96/195 (49%), Gaps = 41/195 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTS + R+ DSF + +T+GIDF KT+Y D+ ++LQ+WDTAGQER+R++ +Y
Sbjct: 16 VGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYY 75
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + +++YDITN SF+ W ++T + ++L
Sbjct: 76 RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLL-------------------- 115
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
VGNK D+ D+R VS+E G + A L F E SAK N
Sbjct: 116 ---------------------VGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNIN 154
Query: 227 VKQVRLQLWDTAGQE 241
VKQ +L D ++
Sbjct: 155 VKQTFERLVDVICEK 169
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 72/113 (63%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N K+++LQ+WDTAGQER+R++ +Y R + +++YDITN SF+ W ++T
Sbjct: 50 NDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD 109
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
+ ++LVGNK D+ D+R VS+E G + A L F E SAK NVKQ F R+
Sbjct: 110 NAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 162
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 98/188 (52%), Gaps = 42/188 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+ L+ RF+ D F+ ++ TIGIDF KT+ + + V+LQ+WDTAGQERFR++ +Y
Sbjct: 14 VGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYY 73
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDIT+ +F +W V HAN
Sbjct: 74 RGAMGIILVYDITDERTFTNIKQWFKTVN------------------------EHANDEA 109
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
Q ++LVGNK+D+ + R V+ ++GE AKEL + FIE+SAK N
Sbjct: 110 Q-----------------LLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDN 151
Query: 227 VKQVRLQL 234
V ++ L
Sbjct: 152 VNEIFFTL 159
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 75/114 (65%), Gaps = 1/114 (0%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N K+V+LQ+WDTAGQERFR++ +Y R + ++VYDIT+ +F +W V
Sbjct: 48 NGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND 107
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
+ ++LVGNK+D+ + R V+ ++GE AKEL + FIE+SAK NV ++F +A
Sbjct: 108 EAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 100/214 (46%), Gaps = 63/214 (29%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
FK++ +G+ VGKT L+ RF +F T+ +T+GIDF
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAF----------------------LAGTFISTVGIDF 48
Query: 74 LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
+K + ++ V+LQ+WDTAGQERFRS+ +Y RD+ +++YD+TN SF W+ +
Sbjct: 49 RNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTE 108
Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
+ DV +M L+GNK D
Sbjct: 109 IHEYAQHDVALM-----------------------------------------LLGNKVD 127
Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 227
+ +R V E+GE+ AKE + F+ETSAK G NV
Sbjct: 128 SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNV 161
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%)
Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI 288
+V+LQ+WDTAGQERFRS+ +Y RD+ +++YD+TN SF W+ ++ DV
Sbjct: 59 KVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVA 118
Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+ML+GNK D + +R V E+GE+ AKE + F+ETSAK G NV F +A L
Sbjct: 119 LMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 97/188 (51%), Gaps = 42/188 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+ L+ RF+ D F+ ++ TIGIDF KT+ + + V+LQLWDTAGQERFR++ +Y
Sbjct: 14 VGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYY 73
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYD+T+ +F +W V HAN
Sbjct: 74 RGAXGIILVYDVTDERTFTNIKQWFKTVN------------------------EHANDEA 109
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
Q ++LVGNK+D + R V+ ++GE AKEL + FIE+SAK N
Sbjct: 110 Q-----------------LLLVGNKSD-XETRVVTADQGEALAKELGIPFIESSAKNDDN 151
Query: 227 VKQVRLQL 234
V ++ L
Sbjct: 152 VNEIFFTL 159
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 74/114 (64%), Gaps = 1/114 (0%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N K+V+LQLWDTAGQERFR++ +Y R + ++VYD+T+ +F +W V
Sbjct: 48 NGKKVKLQLWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHAND 107
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
+ ++LVGNK+D + R V+ ++GE AKEL + FIE+SAK NV ++F +A
Sbjct: 108 EAQLLLVGNKSD-XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 97/188 (51%), Gaps = 42/188 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+ L+ RF+ D F+ ++ TIGIDF KT+ + + V+LQ+WDTAGQERFR++ +Y
Sbjct: 14 VGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYY 73
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDIT+ +F +W V HAN
Sbjct: 74 RGAXGIILVYDITDERTFTNIKQWFKTVN------------------------EHANDEA 109
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
Q ++LVGNK+D + R V+ ++GE AKEL + FIE+SAK N
Sbjct: 110 Q-----------------LLLVGNKSD-XETRVVTADQGEALAKELGIPFIESSAKNDDN 151
Query: 227 VKQVRLQL 234
V ++ L
Sbjct: 152 VNEIFFTL 159
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 74/114 (64%), Gaps = 1/114 (0%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N K+V+LQ+WDTAGQERFR++ +Y R + ++VYDIT+ +F +W V
Sbjct: 48 NGKKVKLQIWDTAGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHAND 107
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
+ ++LVGNK+D + R V+ ++GE AKEL + FIE+SAK NV ++F +A
Sbjct: 108 EAQLLLVGNKSD-XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 95/190 (50%), Gaps = 41/190 (21%)
Query: 45 TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
T VGK+S++ RF+ DSFD TIG F++KT+ ++ + +WDTAGQERFR+L P
Sbjct: 14 TGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPM 73
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
Y R S A++VYDIT +F W+ ++R + G I
Sbjct: 74 YYRGSAAAIIVYDITKEETFSTLKNWVRELR-QHGPPSI--------------------- 111
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
++ + GNK DL+D R+V + + A ++ +F+ETSAK
Sbjct: 112 -------------------VVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNA 152
Query: 225 YNVKQVRLQL 234
N+ ++ +++
Sbjct: 153 ININELFIEI 162
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 76/134 (56%), Gaps = 7/134 (5%)
Query: 217 IETSAKAGYNVKQVRLQ-------LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 269
I + A + K V+ Q +WDTAGQERFR+L P Y R S A++VYDIT +F
Sbjct: 34 INPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETF 93
Query: 270 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 329
W+ ++R +++ + GNK DL+D R+V + + A ++ +F+ETSAK
Sbjct: 94 STLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAI 153
Query: 330 NVKQLFRRVAAALP 343
N+ +LF ++ +P
Sbjct: 154 NINELFIEISRRIP 167
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 93/189 (49%), Gaps = 41/189 (21%)
Query: 46 IVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY 105
VGKTSL+ R+ + F++ + T+G FL+K + + + V L +WDTAGQERF +L P Y
Sbjct: 16 CVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIY 75
Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
RDS A++VYDIT+ +SF + W+ ++R G+++ + +V
Sbjct: 76 YRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIV------------------ 117
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 225
GNK DL +R VS +E E A+ + TSAK
Sbjct: 118 -----------------------GNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNK 154
Query: 226 NVKQVRLQL 234
++++ L L
Sbjct: 155 GIEELFLDL 163
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 70/108 (64%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+V L +WDTAGQERF +L P Y RDS A++VYDIT+ +SF + W+ ++R G+++
Sbjct: 53 KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEI 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
+ +VGNK DL +R VS +E E A+ + TSAK +++LF
Sbjct: 113 CLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 95/200 (47%), Gaps = 41/200 (20%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTS + R+ DSF + +T+GIDF KT+Y D+ ++LQ+WDTAG ER+R++ +Y
Sbjct: 19 VGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++ YDITN SF+ W ++T + ++L
Sbjct: 79 RGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLL-------------------- 118
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
VGNK D D+R VS+E G + A L F E SAK N
Sbjct: 119 ---------------------VGNKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNIN 157
Query: 227 VKQVRLQLWDTAGQERFRSL 246
VKQ +L D ++ SL
Sbjct: 158 VKQTFERLVDVICEKXSESL 177
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 69/113 (61%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N K+++LQ+WDTAG ER+R++ +Y R + ++ YDITN SF+ W ++T
Sbjct: 53 NDKRIKLQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWD 112
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
+ ++LVGNK D D+R VS+E G + A L F E SAK NVKQ F R+
Sbjct: 113 NAQVLLVGNKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 165
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 81/126 (64%), Gaps = 1/126 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K V+LQ+WDTAGQERFRS+ SY R + A++VYDIT+ +++ + W+ D R ++
Sbjct: 57 KYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNI 116
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA-AALPGMD 346
+I+L GNK DL R+V+ E R A+E +MF+ETSA G NV++ F + A L ++
Sbjct: 117 VIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIE 176
Query: 347 STENKP 352
S E P
Sbjct: 177 SGELDP 182
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 103/206 (50%), Gaps = 46/206 (22%)
Query: 34 MYDSFDNTYQATIVG-----KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ 88
M +++D ++ ++G K+ L+ +F+ F + TIG++F SK + + + V+LQ
Sbjct: 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 62
Query: 89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVG 148
+WDTAGQERFRS+ SY R + A++VYDIT+ +++ + W+ D R +++I+
Sbjct: 63 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVII--- 119
Query: 149 SIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERK 208
L GNK DL R+V+ E R
Sbjct: 120 --------------------------------------LCGNKKDLDADREVTFLEASRF 141
Query: 209 AKELNVMFIETSAKAGYNVKQVRLQL 234
A+E +MF+ETSA G NV++ +Q
Sbjct: 142 AQENELMFLETSALTGENVEEAFVQC 167
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 107 bits (268), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 96/183 (52%), Gaps = 41/183 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+ L+ RF D++ +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQERFR++ SY
Sbjct: 27 VGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY 86
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + +VVYD+T+ SF+ +W+ +
Sbjct: 87 RGAHGIIVVYDVTDQESFNNVKQWLQE--------------------------------- 113
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
ID +E +V +LVGNK DL+ K+ V + A L + F+ETSAK N
Sbjct: 114 -----IDRYASE---NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 165
Query: 227 VKQ 229
V+Q
Sbjct: 166 VEQ 168
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 72/115 (62%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQERFR++ SY R + +VVYD+T+ SF+ +W+ ++ +V
Sbjct: 63 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+LVGNK DL+ K+ V + A L + F+ETSAK NV+Q F +AA +
Sbjct: 123 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 96/183 (52%), Gaps = 41/183 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+ L+ RF D++ +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQERFR++ SY
Sbjct: 44 VGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY 103
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + +VVYD+T+ SF+ +W+ +
Sbjct: 104 RGAHGIIVVYDVTDQESFNNVKQWLQE--------------------------------- 130
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
ID +E +V +LVGNK DL+ K+ V + A L + F+ETSAK N
Sbjct: 131 -----IDRYASE---NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 182
Query: 227 VKQ 229
V+Q
Sbjct: 183 VEQ 185
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 71/115 (61%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQERFR++ SY R + +VVYD+T+ SF+ +W+ ++ +V
Sbjct: 80 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV 139
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+LVGNK DL+ K+ V + A L + F+ETSAK NV+Q F AA +
Sbjct: 140 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 96/183 (52%), Gaps = 41/183 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+ L+ RF D++ +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQERFR++ SY
Sbjct: 36 VGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY 95
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + +VVYD+T+ SF+ +W+ +
Sbjct: 96 RGAHGIIVVYDVTDQESFNNVKQWLQE--------------------------------- 122
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
ID +E +V +LVGNK DL+ K+ V + A L + F+ETSAK N
Sbjct: 123 -----IDRYASE---NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 174
Query: 227 VKQ 229
V+Q
Sbjct: 175 VEQ 177
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 72/115 (62%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQERFR++ SY R + +VVYD+T+ SF+ +W+ ++ +V
Sbjct: 72 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV 131
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+LVGNK DL+ K+ V + A L + F+ETSAK NV+Q F +AA +
Sbjct: 132 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 96/183 (52%), Gaps = 41/183 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+ L+ RF D++ +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQERFR++ SY
Sbjct: 17 VGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY 76
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + +VVYD+T+ SF+ +W+ +
Sbjct: 77 RGAHGIIVVYDVTDQESFNNVKQWLQE--------------------------------- 103
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
ID +E +V +LVGNK DL+ K+ V + A L + F+ETSAK N
Sbjct: 104 -----IDRYASE---NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 155
Query: 227 VKQ 229
V+Q
Sbjct: 156 VEQ 158
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 72/115 (62%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQERFR++ SY R + +VVYD+T+ SF+ +W+ ++ +V
Sbjct: 53 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+LVGNK DL+ K+ V + A L + F+ETSAK NV+Q F +AA +
Sbjct: 113 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 96/183 (52%), Gaps = 41/183 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+ L+ RF D++ +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQERFR++ SY
Sbjct: 10 VGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY 69
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + +VVYD+T+ SF+ +W+ +
Sbjct: 70 RGAHGIIVVYDVTDQESFNNVKQWLQE--------------------------------- 96
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
ID +E +V +LVGNK DL+ K+ V + A L + F+ETSAK N
Sbjct: 97 -----IDRYASE---NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 148
Query: 227 VKQ 229
V+Q
Sbjct: 149 VEQ 151
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 72/115 (62%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQERFR++ SY R + +VVYD+T+ SF+ +W+ ++ +V
Sbjct: 46 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV 105
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+LVGNK DL+ K+ V + A L + F+ETSAK NV+Q F +AA +
Sbjct: 106 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 96/183 (52%), Gaps = 41/183 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+ L+ RF D++ +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQERFR++ SY
Sbjct: 17 VGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY 76
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + +VVYD+T+ SF+ +W+ +
Sbjct: 77 RGAHGIIVVYDVTDQESFNNVKQWLQE--------------------------------- 103
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
ID +E +V +LVGNK DL+ K+ V + A L + F+ETSAK N
Sbjct: 104 -----IDRYASE---NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 155
Query: 227 VKQ 229
V+Q
Sbjct: 156 VEQ 158
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 72/115 (62%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQERFR++ SY R + +VVYD+T+ SF+ +W+ ++ +V
Sbjct: 53 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+LVGNK DL+ K+ V + A L + F+ETSAK NV+Q F +AA +
Sbjct: 113 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 76/112 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
++++LQ+WDTAGQERFR++ SY R + A++VYDIT ++++ S W+ D R +
Sbjct: 62 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNT 121
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
+I+L+GNK DL +R V+ EE ++ A+E ++F+E SAK G NV+ F A
Sbjct: 122 VIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA 173
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 94/187 (50%), Gaps = 41/187 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+ L+ +F F TIG++F ++ + + + ++LQ+WDTAGQERFR++ SY
Sbjct: 26 VGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYY 85
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + A++VYDIT ++++ S W+ D R + +I+L
Sbjct: 86 RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIIL-------------------- 125
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+GNK DL +R V+ EE ++ A+E ++F+E SAK G N
Sbjct: 126 ---------------------IGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGEN 164
Query: 227 VKQVRLQ 233
V+ L+
Sbjct: 165 VEDAFLE 171
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 95/183 (51%), Gaps = 41/183 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK L+ RF D++ +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQERFR++ SY
Sbjct: 27 VGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY 86
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + +VVYD+T+ SF+ +W+ +
Sbjct: 87 RGAHGIIVVYDVTDQESFNNVKQWLQE--------------------------------- 113
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
ID +E +V +LVGNK DL+ K+ V + A L + F+ETSAK N
Sbjct: 114 -----IDRYASE---NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 165
Query: 227 VKQ 229
V+Q
Sbjct: 166 VEQ 168
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 72/115 (62%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQERFR++ SY R + +VVYD+T+ SF+ +W+ ++ +V
Sbjct: 63 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+LVGNK DL+ K+ V + A L + F+ETSAK NV+Q F +AA +
Sbjct: 123 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 104/227 (45%), Gaps = 64/227 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G+ LR+ K+ LG+ T VGK+S++ RF+ DSFD
Sbjct: 1 GSALRELKVCLLGD-----------------------TGVGKSSIMWRFVEDSFDPNINP 37
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG F++KT+ ++ + +WDTAG ERFR+L P Y R S A++VYDIT +F
Sbjct: 38 TIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTL 97
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ ++R + G I ++ +
Sbjct: 98 KNWVRELR-QHGPPSI----------------------------------------VVAI 116
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
GNK DL+D R+V + + A ++ +F+ETSAK N+ ++ +++
Sbjct: 117 AGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 75/134 (55%), Gaps = 7/134 (5%)
Query: 217 IETSAKAGYNVKQVRLQ-------LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 269
I + A + K V+ Q +WDTAG ERFR+L P Y R S A++VYDIT +F
Sbjct: 35 INPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETF 94
Query: 270 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 329
W+ ++R +++ + GNK DL+D R+V + + A ++ +F+ETSAK
Sbjct: 95 STLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAI 154
Query: 330 NVKQLFRRVAAALP 343
N+ +LF ++ +P
Sbjct: 155 NINELFIEISRRIP 168
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 102/212 (48%), Gaps = 46/212 (21%)
Query: 28 SLITRFMYDSFDNTYQATI-----VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED 82
L+ R + +D ++ + VGKT L+ RF F ATIG+DF+ KT+ +
Sbjct: 13 GLVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEING 72
Query: 83 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 142
V+LQ+WDTAGQERFRS+ SY R + ++ YDIT SF +W+ ++ + V
Sbjct: 73 EKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKV 132
Query: 143 IIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST 202
I +L VGNK DL+++R+VS
Sbjct: 133 ITVL-----------------------------------------VGNKIDLAERREVSQ 151
Query: 203 EEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
+ E ++ ++ ++ETSAK NV+++ L L
Sbjct: 152 QRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 183
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 77/117 (65%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N ++V+LQ+WDTAGQERFRS+ SY R + ++ YDIT SF +W+ ++ +
Sbjct: 71 NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASN 130
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
VI +LVGNK DL+++R+VS + E ++ ++ ++ETSAK NV++LF +A L
Sbjct: 131 KVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 98/188 (52%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+ L+ RF D++ +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQERFR++ SY
Sbjct: 20 VGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + +VVYD+T+ S+ +W+ +
Sbjct: 80 RGAHGIIVVYDVTDQESYANVKQWLQE--------------------------------- 106
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
ID +E +V +LVGNK+DL+ K+ V + A L + F+ETSAK N
Sbjct: 107 -----IDRYASE---NVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATN 158
Query: 227 VKQVRLQL 234
V+Q + +
Sbjct: 159 VEQAFMTM 166
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 72/115 (62%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQERFR++ SY R + +VVYD+T+ S+ +W+ ++ +V
Sbjct: 56 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+LVGNK+DL+ K+ V + A L + F+ETSAK NV+Q F +AA +
Sbjct: 116 NKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 96/190 (50%), Gaps = 41/190 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTS + R+ D+F + +T+GIDF KT+Y ++ V+LQ+WDTAGQER+R++ +Y
Sbjct: 34 VGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYY 93
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + +++YDITN SF+ W ++T + ++L
Sbjct: 94 RGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVIL-------------------- 133
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
VGNK D+ ++R V TE+G+ A++L F E SAK +
Sbjct: 134 ---------------------VGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENIS 172
Query: 227 VKQVRLQLWD 236
V+Q +L D
Sbjct: 173 VRQAFERLVD 182
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 75/115 (65%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+V+LQ+WDTAGQER+R++ +Y R + +++YDITN SF+ W ++T +
Sbjct: 70 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNA 129
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
++LVGNK D+ ++R V TE+G+ A++L F E SAK +V+Q F R+ A+
Sbjct: 130 QVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 98/188 (52%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+ L+ RF D++ +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQERFR++ SY
Sbjct: 20 VGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + +VVYD+T+ S+ +W+ +
Sbjct: 80 RGAHGIIVVYDVTDQESYANVKQWLQE--------------------------------- 106
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
ID +E +V +LVGNK+DL+ K+ V + A L + F+ETSAK N
Sbjct: 107 -----IDRYASE---NVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATN 158
Query: 227 VKQVRLQL 234
V+Q + +
Sbjct: 159 VEQAFMTM 166
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 72/115 (62%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQERFR++ SY R + +VVYD+T+ S+ +W+ ++ +V
Sbjct: 56 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+LVGNK+DL+ K+ V + A L + F+ETSAK NV+Q F +AA +
Sbjct: 116 NKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 75/112 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K V+LQ+WDTAGQERFRS+ SY R + A++VYDIT+ +++ + W+ D R ++
Sbjct: 58 KYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNI 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
+I+L GNK DL R+V+ E R A+E +MF+ETSA G +V++ F + A
Sbjct: 118 VIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCA 169
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 94/187 (50%), Gaps = 41/187 (21%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GK+ L+ +F+ F + TIG++F SK + + + V+LQ+WDTAGQERFRS+ SY R
Sbjct: 23 GKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYR 82
Query: 108 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ 167
+ A++VYDIT+ +++ + W+ D R +++I+
Sbjct: 83 GAAGALLVYDITSRETYNALTNWLTDARMLASQNIVII---------------------- 120
Query: 168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 227
L GNK DL R+V+ E R A+E +MF+ETSA G +V
Sbjct: 121 -------------------LCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDV 161
Query: 228 KQVRLQL 234
++ +Q
Sbjct: 162 EEAFVQC 168
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 102/202 (50%), Gaps = 47/202 (23%)
Query: 34 MYDSFDNTYQATI-----VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ 88
M +D+ ++ I VGK+SL+ RF ++F +Y TIG+DF +T+ + V+LQ
Sbjct: 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQ 61
Query: 89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVG 148
+WDTAGQERFR++ +Y R + +VVYD+T+A SF +W+
Sbjct: 62 IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWL----------------- 104
Query: 149 SIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERK 208
H+ ++ D DV +LVGNK D +++ V TE+ +
Sbjct: 105 -----------------HEINQNCD--------DVCRILVGNKNDDPERKVVETEDAYKF 139
Query: 209 AKELNVMFIETSAKAGYNVKQV 230
A ++ + ETSAK NV+++
Sbjct: 140 AGQMGIQLFETSAKENVNVEEM 161
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 74/113 (65%), Gaps = 1/113 (0%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N ++V+LQ+WDTAGQERFR++ +Y R + +VVYD+T+A SF +W+ ++ +
Sbjct: 54 NGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI-NQNCD 112
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
DV +LVGNK D +++ V TE+ + A ++ + ETSAK NV+++F +
Sbjct: 113 DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCI 165
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 92/189 (48%), Gaps = 41/189 (21%)
Query: 46 IVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY 105
VGKTSL+ R+ + F++ + T+ FL+K + + + V L +WDTAGQERF +L P Y
Sbjct: 16 CVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIY 75
Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
RDS A++VYDIT+ +SF + W+ ++R G+++ + +V
Sbjct: 76 YRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIV------------------ 117
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 225
GNK DL +R VS +E E A+ + TSAK
Sbjct: 118 -----------------------GNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNK 154
Query: 226 NVKQVRLQL 234
++++ L L
Sbjct: 155 GIEELFLDL 163
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 70/108 (64%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+V L +WDTAGQERF +L P Y RDS A++VYDIT+ +SF + W+ ++R G+++
Sbjct: 53 KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEI 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
+ +VGNK DL +R VS +E E A+ + TSAK +++LF
Sbjct: 113 CLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 92/189 (48%), Gaps = 41/189 (21%)
Query: 46 IVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY 105
VGKTSL+ R+ + F++ + T+ FL+K + + + V L +WDTAGQERF +L P Y
Sbjct: 30 CVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIY 89
Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
RDS A++VYDIT+ +SF + W+ ++R G+++ + +V
Sbjct: 90 YRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIV------------------ 131
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 225
GNK DL +R VS +E E A+ + TSAK
Sbjct: 132 -----------------------GNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNK 168
Query: 226 NVKQVRLQL 234
++++ L L
Sbjct: 169 GIEELFLDL 177
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 70/108 (64%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+V L +WDTAGQERF +L P Y RDS A++VYDIT+ +SF + W+ ++R G+++
Sbjct: 67 KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEI 126
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
+ +VGNK DL +R VS +E E A+ + TSAK +++LF
Sbjct: 127 CLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 174
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 103/195 (52%), Gaps = 41/195 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK++L++RF + F+ ++TIG++F ++T+ +E + ++ Q+WDTAGQER+R++ +Y
Sbjct: 24 VGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYY 83
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + A++VYDI+ ++S+ + W+ ++R +V + L+
Sbjct: 84 RGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLI------------------- 124
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
GNK+DL+ R V TEE + A+E ++F ETSA N
Sbjct: 125 ----------------------GNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSEN 162
Query: 227 VKQVRLQLWDTAGQE 241
V + +L +T Q+
Sbjct: 163 VDKAFEELINTIYQK 177
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 73/111 (65%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++ Q+WDTAGQER+R++ +Y R + A++VYDI+ ++S+ + W+ ++R +V
Sbjct: 60 KRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
+ L+GNK+DL+ R V TEE + A+E ++F ETSA NV + F +
Sbjct: 120 AVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL 170
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 100/189 (52%), Gaps = 42/189 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSY 105
VGK++L++RF D F+ ++TIG++F +K++ L++ + ++ Q+WDTAGQER+R++ +Y
Sbjct: 18 VGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQERYRAITSAY 77
Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
R + A++VYDIT NSF KW+ ++R S+++I+LVG
Sbjct: 78 YRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVG----------------- 120
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 225
NK+DL R ++ + + AK+ + FIETSA
Sbjct: 121 ------------------------NKSDLKHLRVINDNDATQYAKKEKLAFIETSALEAT 156
Query: 226 NVKQVRLQL 234
NV+ QL
Sbjct: 157 NVELAFHQL 165
Score = 100 bits (250), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 74/113 (65%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N K ++ Q+WDTAGQER+R++ +Y R + A++VYDIT NSF KW+ ++R S
Sbjct: 53 NNKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADS 112
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
+++I+LVGNK+DL R ++ + + AK+ + FIETSA NV+ F ++
Sbjct: 113 NIVILLVGNKSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQL 165
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 79/129 (61%), Gaps = 6/129 (4%)
Query: 211 ELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 270
E IE S + +++LQ+WDTAGQ RFR++ SY R + A++VYDIT ++++
Sbjct: 66 EFGTRIIEVSGQ------KIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYN 119
Query: 271 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 330
S W+ D R + +I+L+GNK DL +R V+ EE ++ A+E ++F+E SAK G N
Sbjct: 120 HLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGEN 179
Query: 331 VKQLFRRVA 339
V+ F A
Sbjct: 180 VEDAFLEAA 188
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 93/187 (49%), Gaps = 41/187 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+ L+ +F F TIG++F ++ + + + ++LQ+WDTAGQ RFR++ SY
Sbjct: 41 VGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRAVTRSYY 100
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + A++VYDIT ++++ S W+ D R + +I+L
Sbjct: 101 RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIIL-------------------- 140
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+GNK DL +R V+ EE ++ A+E ++F+E SAK G N
Sbjct: 141 ---------------------IGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGEN 179
Query: 227 VKQVRLQ 233
V+ L+
Sbjct: 180 VEDAFLE 186
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 93/188 (49%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+ L+ RF D++ N Y +TIG+DF KT+ L+ +TV+LQ+WDTAGQERFR++ SY
Sbjct: 19 VGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R S ++VYD+T+ SF+ W+ ++ S V+ +L
Sbjct: 79 RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLL-------------------- 118
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
VGNK DL DKR V + + A + F+ETSA N
Sbjct: 119 ---------------------VGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTN 157
Query: 227 VKQVRLQL 234
V+ L +
Sbjct: 158 VEDAFLTM 165
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 72/123 (58%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K V+LQ+WDTAGQERFR++ SY R S ++VYD+T+ SF+ W+ ++ S V
Sbjct: 55 KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+ +LVGNK DL DKR V + + A + F+ETSA NV+ F +A + S
Sbjct: 115 LKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS 174
Query: 348 TEN 350
+N
Sbjct: 175 QQN 177
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 93/188 (49%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+ L+ RF D++ N Y +TIG+DF KT+ L+ +TV+LQ+WDTAGQERFR++ SY
Sbjct: 19 VGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R S ++VYD+T+ SF+ W+ ++ S V+ +L
Sbjct: 79 RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLL-------------------- 118
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
VGNK DL DKR V + + A + F+ETSA N
Sbjct: 119 ---------------------VGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTN 157
Query: 227 VKQVRLQL 234
V+ L +
Sbjct: 158 VEDAFLTM 165
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 72/123 (58%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K V+LQ+WDTAGQERFR++ SY R S ++VYD+T+ SF+ W+ ++ S V
Sbjct: 55 KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+ +LVGNK DL DKR V + + A + F+ETSA NV+ F +A + S
Sbjct: 115 LKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS 174
Query: 348 TEN 350
+N
Sbjct: 175 QQN 177
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 93/188 (49%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+ L+ RF D++ N Y +TIG+DF KT+ L+ +TV+LQ+WDTAGQERFR++ SY
Sbjct: 32 VGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYY 91
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R S ++VYD+T+ SF+ W+ ++ S V+ +L
Sbjct: 92 RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLL-------------------- 131
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
VGNK DL DKR V + + A + F+ETSA N
Sbjct: 132 ---------------------VGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTN 170
Query: 227 VKQVRLQL 234
V+ L +
Sbjct: 171 VEDAFLTM 178
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 68/112 (60%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K V+LQ+WDTAGQERFR++ SY R S ++VYD+T+ SF+ W+ ++ S V
Sbjct: 68 KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTV 127
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
+ +LVGNK DL DKR V + + A + F+ETSA NV+ F +A
Sbjct: 128 LKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMA 179
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 95/183 (51%), Gaps = 41/183 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+ L+ RF D++ +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQERFR++ SY
Sbjct: 19 VGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + +VVYD+T+ SF+ +W+ +
Sbjct: 79 RGAHGIIVVYDVTDQESFNNVKQWLQE--------------------------------- 105
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
ID +E +V +LVG K DL+ K+ V + A L + F+ETSAK N
Sbjct: 106 -----IDRYASE---NVNKLLVGIKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 157
Query: 227 VKQ 229
V+Q
Sbjct: 158 VEQ 160
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 71/115 (61%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQERFR++ SY R + +VVYD+T+ SF+ +W+ ++ +V
Sbjct: 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+LVG K DL+ K+ V + A L + F+ETSAK NV+Q F +AA +
Sbjct: 115 NKLLVGIKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 78/114 (68%), Gaps = 3/114 (2%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N+ ++ +WDTAGQER+ S++P Y R +T A+VV+DI+N+N+ + W++ ++ S
Sbjct: 89 NLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKI--SS 146
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
+ II+LV NK D +K QV E ++ A++ N++FI+TSAK G N+K +F +A
Sbjct: 147 NYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLA 199
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 115/248 (46%), Gaps = 62/248 (25%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGK-----TSLITRFMYDSFDNTYQAT 68
+K V LGE SVGK+S++ R D+F TI +L + ++ +N
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 69 IGIDFLSKTMYLEDR---------TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT 119
I + + ++ ++ +WDTAGQER+ S++P Y R +T A+VV+DI+
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 120 NANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTER 179
N+N+ + W++ ++ I +N+
Sbjct: 128 NSNTLDRAKTWVNQLK--------------ISSNY------------------------- 148
Query: 180 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAG 239
II+LV NK D +K QV E ++ A++ N++FI+TSAK G N+K + L
Sbjct: 149 ----IIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYML----A 199
Query: 240 QERFRSLI 247
+E ++++I
Sbjct: 200 EEIYKNII 207
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 74/112 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K V+LQ+WDTAG ERFRS+ SY R + A++VYDIT+ +++ + W+ D R ++
Sbjct: 55 KYVKLQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNI 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
+I+L GNK DL R+V+ E R A+E +MF+ETSA G +V++ F + A
Sbjct: 115 VIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCA 166
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 41/187 (21%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GK+ L+ +F+ F + TIG++F SK + + + V+LQ+WDTAG ERFRS+ SY R
Sbjct: 20 GKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLERFRSVTRSYYR 79
Query: 108 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ 167
+ A++VYDIT+ +++ + W+ D R +++I+
Sbjct: 80 GAAGALLVYDITSRETYNALTNWLTDARMLASQNIVII---------------------- 117
Query: 168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 227
L GNK DL R+V+ E R A+E +MF+ETSA G +V
Sbjct: 118 -------------------LCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDV 158
Query: 228 KQVRLQL 234
++ +Q
Sbjct: 159 EEAFVQC 165
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 94/182 (51%), Gaps = 41/182 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+SL+ RF D+FD ATIG+DF KT+ ++ +L +WDTAGQERFR+L PSY
Sbjct: 26 VGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYY 85
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYD+T ++F + W+++ +ET T
Sbjct: 86 RGAQGVILVYDVTRRDTFVKLDNWLNE----------------LETYCTR---------- 119
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+D++ LVGNK D + R+V EG + A++ + +FIE SAK
Sbjct: 120 --------------NDIVNXLVGNKID-KENREVDRNEGLKFARKHSXLFIEASAKTCDG 164
Query: 227 VK 228
V+
Sbjct: 165 VQ 166
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 78/127 (61%), Gaps = 5/127 (3%)
Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDV 287
+ +L +WDTAGQERFR+L PSY R + ++VYD+T ++F + W++++ T +D+
Sbjct: 63 KAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDI 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL---PG 344
+ LVGNK D + R+V EG + A++ + +FIE SAK V+ F + + PG
Sbjct: 123 VNXLVGNKID-KENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQTPG 181
Query: 345 MDSTENK 351
+ +EN+
Sbjct: 182 LWESENQ 188
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 97/183 (53%), Gaps = 41/183 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK++L++RF + F+ ++TIG++F ++++ ++ +T++ Q+WDTAGQER+R + +Y
Sbjct: 16 VGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYY 75
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + A++VYDI ++ +W+ ++R S+++IMLV
Sbjct: 76 RGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV------------------- 116
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
GNK+DL R V T+E A++ N+ FIETSA N
Sbjct: 117 ----------------------GNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTN 154
Query: 227 VKQ 229
V++
Sbjct: 155 VEE 157
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 72/111 (64%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++ Q+WDTAGQER+R + +Y R + A++VYDI ++ +W+ ++R S++
Sbjct: 52 KTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI 111
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
+IMLVGNK+DL R V T+E A++ N+ FIETSA NV++ F+ +
Sbjct: 112 VIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 100 bits (250), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 96/185 (51%), Gaps = 39/185 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTSL+ +++ F N Y+ATIG DFL+K + ++DR V +Q+WDTAGQERF+SL ++
Sbjct: 19 VGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + V+V+D+T N+F W D+ L+ + + + F
Sbjct: 79 RGADCCVLVFDVTAPNTFKTLDSWRDE-----------FLIQASPRDPENFPF------- 120
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKA-KELNVMFIETSAKAGY 225
+++GNK DL + RQV+T+ + + N+ + ETSAK
Sbjct: 121 -------------------VVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAI 160
Query: 226 NVKQV 230
NV+Q
Sbjct: 161 NVEQA 165
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 6/115 (5%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS---- 285
V +Q+WDTAGQERF+SL ++ R + V+V+D+T N+F W D+ +
Sbjct: 57 VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPE 116
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKA-KELNVMFIETSAKAGYNVKQLFRRVA 339
+ +++GNK DL + RQV+T+ + + N+ + ETSAK NV+Q F+ +A
Sbjct: 117 NFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 96/184 (52%), Gaps = 39/184 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTSL+ +++ F N Y+ATIG DFL+K + ++DR V +Q+WDTAGQERF+SL ++
Sbjct: 19 VGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + V+V+D+T N+F W D+ L+ + + + F
Sbjct: 79 RGADCCVLVFDVTAPNTFKTLDSWRDE-----------FLIQASPRDPENFPF------- 120
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKA-KELNVMFIETSAKAGY 225
+++GNK DL + RQV+T+ + + N+ + ETSAK
Sbjct: 121 -------------------VVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAI 160
Query: 226 NVKQ 229
NV+Q
Sbjct: 161 NVEQ 164
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 6/115 (5%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS---- 285
V +Q+WDTAGQERF+SL ++ R + V+V+D+T N+F W D+ +
Sbjct: 57 VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPE 116
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKA-KELNVMFIETSAKAGYNVKQLFRRVA 339
+ +++GNK DL + RQV+T+ + + N+ + ETSAK NV+Q F+ +A
Sbjct: 117 NFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 108/215 (50%), Gaps = 49/215 (22%)
Query: 19 LGEQSVGKTSLITRFMYDSFDNTYQATI-----VGKTSLITRFMYDSFDNTYQATIGIDF 73
+G SL+ R S+D ++ + VGK++L++RF + F+ ++TIG++F
Sbjct: 1 MGHHHHHHGSLVPR---GSYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEF 57
Query: 74 LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
++++ ++ +T++ Q+WDTAGQER+R++ +Y R + A++VYDI ++ +W+ +
Sbjct: 58 ATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE 117
Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
+R S+++IMLV GNK+D
Sbjct: 118 LRDHADSNIVIMLV-----------------------------------------GNKSD 136
Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
L R V T+E A++ + FIETSA NV+
Sbjct: 137 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVE 171
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 71/111 (63%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++ Q+WDTAGQER+R++ +Y R + A++VYDI ++ +W+ ++R S++
Sbjct: 67 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI 126
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
+IMLVGNK+DL R V T+E A++ + FIETSA NV+ F+ +
Sbjct: 127 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 177
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 95/185 (51%), Gaps = 39/185 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTSL+ +++ F N Y+ATIG DFL+K + ++DR V +Q+WDTAGQERF+SL ++
Sbjct: 19 VGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + V+V+D+T N+F W D+ L+ + + + F
Sbjct: 79 RGADCCVLVFDVTAPNTFKTLDSWRDE-----------FLIQASPRDPENFPF------- 120
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKA-KELNVMFIETSAKAGY 225
+++GNK D + RQV+T+ + + N+ + ETSAK
Sbjct: 121 -------------------VVLGNKIDFEN-RQVATKRAQAWCYSKNNIPYFETSAKEAI 160
Query: 226 NVKQV 230
NV+Q
Sbjct: 161 NVEQA 165
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 67/115 (58%), Gaps = 6/115 (5%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS---- 285
V +Q+WDTAGQERF+SL ++ R + V+V+D+T N+F W D+ +
Sbjct: 57 VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPE 116
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKA-KELNVMFIETSAKAGYNVKQLFRRVA 339
+ +++GNK D + RQV+T+ + + N+ + ETSAK NV+Q F+ +A
Sbjct: 117 NFPFVVLGNKIDFEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 102/198 (51%), Gaps = 46/198 (23%)
Query: 36 DSFDNTYQATI-----VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90
D +D ++ + VGK++L++RF + F+ ++TIG++F ++++ ++ +T++ Q+W
Sbjct: 24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 83
Query: 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSI 150
DTAGQER+R++ +Y R + A++VYDI ++ +W+ ++R S+++IMLV
Sbjct: 84 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV--- 140
Query: 151 ETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK 210
GNK+DL R V T+E A+
Sbjct: 141 --------------------------------------GNKSDLRHLRAVPTDEARAFAE 162
Query: 211 ELNVMFIETSAKAGYNVK 228
+ + FIETSA NV+
Sbjct: 163 KNGLSFIETSALDSTNVE 180
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 71/111 (63%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++ Q+WDTAGQER+R++ +Y R + A++VYDI ++ +W+ ++R S++
Sbjct: 76 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI 135
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
+IMLVGNK+DL R V T+E A++ + FIETSA NV+ F+ +
Sbjct: 136 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 98/188 (52%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK++L++RF D F+ ++TIG++F ++T+ +E++ ++ Q+WDTAG ER+R++ +Y
Sbjct: 21 VGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLERYRAITSAYY 80
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + A++VYDI+ ++S+ + W+ ++R +V + L+
Sbjct: 81 RGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLI------------------- 121
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
GNK+DL+ R V T+E + A E ++F ETSA N
Sbjct: 122 ----------------------GNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDN 159
Query: 227 VKQVRLQL 234
V + +L
Sbjct: 160 VDKAFREL 167
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 75/118 (63%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++ Q+WDTAG ER+R++ +Y R + A++VYDI+ ++S+ + W+ ++R +V
Sbjct: 57 KKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNV 116
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
+ L+GNK+DL+ R V T+E + A E ++F ETSA NV + FR + A+ M
Sbjct: 117 AVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQM 174
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 95/184 (51%), Gaps = 39/184 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTSL+ +++ F N Y+ATIG DFL+K + ++DR V +Q+WDTAG ERF+SL ++
Sbjct: 19 VGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLERFQSLGVAFY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + V+V+D+T N+F W D+ L+ + + + F
Sbjct: 79 RGADCCVLVFDVTAPNTFKTLDSWRDE-----------FLIQASPRDPENFPF------- 120
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKA-KELNVMFIETSAKAGY 225
+++GNK DL + RQV+T+ + + N+ + ETSAK
Sbjct: 121 -------------------VVLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAI 160
Query: 226 NVKQ 229
NV+Q
Sbjct: 161 NVEQ 164
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 67/115 (58%), Gaps = 6/115 (5%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS---- 285
V +Q+WDTAG ERF+SL ++ R + V+V+D+T N+F W D+ +
Sbjct: 57 VTMQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPE 116
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKA-KELNVMFIETSAKAGYNVKQLFRRVA 339
+ +++GNK DL + RQV+T+ + + N+ + ETSAK NV+Q F+ +A
Sbjct: 117 NFPFVVLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 101/198 (51%), Gaps = 46/198 (23%)
Query: 36 DSFDNTYQATI-----VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90
D +D ++ + VGK++L++RF + F+ ++TIG++F ++++ ++ +T++ Q+W
Sbjct: 24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 83
Query: 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSI 150
DTAG ER+R++ +Y R + A++VYDI ++ +W+ ++R S+++IMLV
Sbjct: 84 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV--- 140
Query: 151 ETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK 210
GNK+DL R V T+E A+
Sbjct: 141 --------------------------------------GNKSDLRHLRAVPTDEARAFAE 162
Query: 211 ELNVMFIETSAKAGYNVK 228
+ + FIETSA NV+
Sbjct: 163 KNGLSFIETSALDSTNVE 180
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 70/111 (63%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++ Q+WDTAG ER+R++ +Y R + A++VYDI ++ +W+ ++R S++
Sbjct: 76 KTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI 135
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
+IMLVGNK+DL R V T+E A++ + FIETSA NV+ F+ +
Sbjct: 136 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 85/194 (43%), Gaps = 47/194 (24%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+S + R + F AT+G+DF KT+ ++ LQLWDTAGQERFRS+ SY
Sbjct: 39 VGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYF 98
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + +++YD+T SF +W+D + V IML
Sbjct: 99 RKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIML-------------------- 138
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSD------KRQVSTEEGERKAKELNVMFIETS 220
VGNK D+ D ++ V GE+ A +F ETS
Sbjct: 139 ---------------------VGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETS 177
Query: 221 AKAGYNVKQVRLQL 234
AK G N+ + L L
Sbjct: 178 AKDGSNIVEAVLHL 191
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIML 291
LQLWDTAGQERFRS+ SY R + +++YD+T SF +W+D + V IML
Sbjct: 79 LQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIML 138
Query: 292 VGNKTDLSD------KRQVSTEEGERKAKELNVMFIETSAKAGYNV 331
VGNK D+ D ++ V GE+ A +F ETSAK G N+
Sbjct: 139 VGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNI 184
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 101/198 (51%), Gaps = 46/198 (23%)
Query: 36 DSFDNTYQATI-----VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90
D +D ++ + VGK++L++RF + F+ ++TIG++F ++++ ++ +T++ Q+W
Sbjct: 3 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 62
Query: 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSI 150
DTAG ER+R++ +Y R + A++VYDI ++ +W+ ++R S+++IMLV
Sbjct: 63 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV--- 119
Query: 151 ETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK 210
GNK+DL R V T+E A+
Sbjct: 120 --------------------------------------GNKSDLRHLRAVPTDEARAFAE 141
Query: 211 ELNVMFIETSAKAGYNVK 228
+ + FIETSA NV+
Sbjct: 142 KNGLSFIETSALDSTNVE 159
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 70/111 (63%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++ Q+WDTAG ER+R++ +Y R + A++VYDI ++ +W+ ++R S++
Sbjct: 55 KTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
+IMLVGNK+DL R V T+E A++ + FIETSA NV+ F+ +
Sbjct: 115 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 165
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 71/103 (68%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+ L+ RF D++ +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQERFR++ SY
Sbjct: 9 VGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY 68
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGS 149
R + +VVYD+T+ SF+ +W+ ++ +V +LVG+
Sbjct: 69 RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 111
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 49/72 (68%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQERFR++ SY R + +VVYD+T+ SF+ +W+ ++ +V
Sbjct: 45 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV 104
Query: 288 IIMLVGNKTDLS 299
+LVGNK DL+
Sbjct: 105 NKLLVGNKCDLT 116
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 84/177 (47%), Gaps = 41/177 (23%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSY 105
VGKT L RF F + +ATIG+DF + + ++ +++QLWDTAGQERFR S++ Y
Sbjct: 31 VGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHY 90
Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
R+ V VYD+TN SFH WI++ + HL
Sbjct: 91 YRNVHAVVFVYDMTNMASFHSLPAWIEECK-------------------QHL-------- 123
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
+D+ +LVGNK DL QV T+ ++ A ++ ETSAK
Sbjct: 124 -------------LANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAK 167
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 63/101 (62%), Gaps = 2/101 (1%)
Query: 228 KQVRLQLWDTAGQERFR-SLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE-RGS 285
+++++QLWDTAGQERFR S++ Y R+ V VYD+TN SFH WI++ + +
Sbjct: 67 ERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAN 126
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 326
D+ +LVGNK DL QV T+ ++ A ++ ETSAK
Sbjct: 127 DIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAK 167
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 92/182 (50%), Gaps = 41/182 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT+L++RF + F + + TIG++F ++T+ L V+ Q+WDTAG ER+R++ +Y
Sbjct: 36 VGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYY 95
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + A++V+D+T ++ +W+ ++ + +++ML
Sbjct: 96 RGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVML-------------------- 135
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
VGNK+DLS R+V TEE A+ ++F+ETSA N
Sbjct: 136 ---------------------VGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTN 174
Query: 227 VK 228
V+
Sbjct: 175 VE 176
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 69/109 (63%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ Q+WDTAG ER+R++ +Y R + A++V+D+T ++ +W+ ++ + +++
Sbjct: 74 VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVV 133
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
MLVGNK+DLS R+V TEE A+ ++F+ETSA NV+ F V
Sbjct: 134 MLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETV 182
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 92/182 (50%), Gaps = 41/182 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT+L++RF + F + + TIG++F ++T+ L V+ Q+WDTAG ER+R++ +Y
Sbjct: 21 VGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYY 80
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + A++V+D+T ++ +W+ ++ + +++ML
Sbjct: 81 RGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVML-------------------- 120
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
VGNK+DLS R+V TEE A+ ++F+ETSA N
Sbjct: 121 ---------------------VGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTN 159
Query: 227 VK 228
V+
Sbjct: 160 VE 161
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 69/109 (63%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ Q+WDTAG ER+R++ +Y R + A++V+D+T ++ +W+ ++ + +++
Sbjct: 59 VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVV 118
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
MLVGNK+DLS R+V TEE A+ ++F+ETSA NV+ F V
Sbjct: 119 MLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETV 167
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 80/184 (43%), Gaps = 42/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+S+I R+ F Y+ TIG+DFL + + + D VRL LWDTAGQE F ++ +Y
Sbjct: 16 VGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYY 75
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + V+V+ T+ SF S W + V E G
Sbjct: 76 RGAQACVLVFSTTDRESFEAISSWREKVVAEVG--------------------------- 108
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
D+ LV NK DL D + EE E AK L + F TS K N
Sbjct: 109 ---------------DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLN 153
Query: 227 VKQV 230
V +V
Sbjct: 154 VSEV 157
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 70/130 (53%), Gaps = 3/130 (2%)
Query: 210 KELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 269
K + V F+E + N + VRL LWDTAGQE F ++ +Y R + V+V+ T+ SF
Sbjct: 36 KTIGVDFLERQIQV--NDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESF 93
Query: 270 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 329
S W + V E G D+ LV NK DL D + EE E AK L + F TS K
Sbjct: 94 EAISSWREKVVAEVG-DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDL 152
Query: 330 NVKQLFRRVA 339
NV ++F+ +A
Sbjct: 153 NVSEVFKYLA 162
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 102/204 (50%), Gaps = 48/204 (23%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSY 105
VGKTSL+ R++ D + Y+ATIG DFL+K + ++ D+ +Q+WDTAGQERF+SL ++
Sbjct: 19 VGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAF 78
Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
R + V+VYD+TNA+SF W D+ H + + +F
Sbjct: 79 YRGADCCVLVYDVTNASSFENIKSWRDEF-------------------LVHANVNSPETF 119
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERK-AKEL-NVMFIETSAKA 223
+++GNK D + +++ +E+ ++ AK L ++ TSAK
Sbjct: 120 P------------------FVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKN 161
Query: 224 GYNVKQVRLQLWDTAGQERFRSLI 247
NV DTA +E RS +
Sbjct: 162 AINV--------DTAFEEIARSAL 177
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 6/118 (5%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
K +Q+WDTAGQERF+SL ++ R + V+VYD+TNA+SF W D+ +
Sbjct: 56 KVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNS 115
Query: 287 ---VIIMLVGNKTDLSDKRQVSTEEGERK-AKEL-NVMFIETSAKAGYNVKQLFRRVA 339
+++GNK D + +++ +E+ ++ AK L ++ TSAK NV F +A
Sbjct: 116 PETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIA 173
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 82/177 (46%), Gaps = 41/177 (23%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSY 105
VGKT L RF F + +ATIG+DF + + ++ +++QLWDTAGQERFR S++ Y
Sbjct: 40 VGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHY 99
Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
R+ V VYD TN SFH WI++ + HL
Sbjct: 100 YRNVHAVVFVYDXTNXASFHSLPAWIEECK-------------------QHL-------- 132
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
+D+ +LVGNK DL QV T+ ++ A + ETSAK
Sbjct: 133 -------------LANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAK 176
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 61/101 (60%), Gaps = 2/101 (1%)
Query: 228 KQVRLQLWDTAGQERFR-SLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE-RGS 285
+++++QLWDTAGQERFR S++ Y R+ V VYD TN SFH WI++ + +
Sbjct: 76 ERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLAN 135
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 326
D+ +LVGNK DL QV T+ ++ A + ETSAK
Sbjct: 136 DIPRILVGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAK 176
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 100/198 (50%), Gaps = 46/198 (23%)
Query: 36 DSFDNTYQATI-----VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90
D +D ++ + VGK++L++RF + F+ ++TIG++F ++++ ++ +T++ Q+W
Sbjct: 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 65
Query: 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSI 150
DTAG ER+R++ +Y R + A++VYDI ++ +W+ ++R S+++I LV
Sbjct: 66 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLV--- 122
Query: 151 ETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK 210
GNK+DL R V T+E A+
Sbjct: 123 --------------------------------------GNKSDLRHLRAVPTDEARAFAE 144
Query: 211 ELNVMFIETSAKAGYNVK 228
+ + FIETSA NV+
Sbjct: 145 KNGLSFIETSALDSTNVE 162
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 69/111 (62%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++ Q+WDTAG ER+R++ +Y R + A++VYDI ++ +W+ ++R S++
Sbjct: 58 KTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
+I LVGNK+DL R V T+E A++ + FIETSA NV+ F+ +
Sbjct: 118 VIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 168
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 94/182 (51%), Gaps = 41/182 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK++L++RF + F+ ++TIG++F ++++ ++ +T++ Q+WDTAG ER+R++ +Y
Sbjct: 16 VGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYY 75
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + A++VYDI ++ +W+ ++R S+++I LV
Sbjct: 76 RGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLV------------------- 116
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
GNK+DL R V T+E A++ + FIETSA N
Sbjct: 117 ----------------------GNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTN 154
Query: 227 VK 228
V+
Sbjct: 155 VE 156
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 69/111 (62%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++ Q+WDTAG ER+R++ +Y R + A++VYDI ++ +W+ ++R S++
Sbjct: 52 KTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI 111
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
+I LVGNK+DL R V T+E A++ + FIETSA NV+ F+ +
Sbjct: 112 VIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 162
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 91/200 (45%), Gaps = 50/200 (25%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR----------TVRLQLWDTAGQE 96
VGKT+ + R+ + F+ + T+GIDF K + + V LQLWDTAGQE
Sbjct: 36 VGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE 95
Query: 97 RFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTH 156
RFRSL ++ RD+ ++++D+T+ SF W+ +
Sbjct: 96 RFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQL---------------------- 133
Query: 157 LSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF 216
AN++ + I+L+GNK DL D+R+V+ + A + + +
Sbjct: 134 ----QANAYCENPD--------------IVLIGNKADLPDQREVNERQARELADKYGIPY 175
Query: 217 IETSAKAGYNVKQVRLQLWD 236
ETSA G NV++ L D
Sbjct: 176 FETSAATGQNVEKAVETLLD 195
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDV 287
+V LQLWDTAGQERFRSL ++ RD+ ++++D+T+ SF W+ ++ +
Sbjct: 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 142
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333
I+L+GNK DL D+R+V+ + A + + + ETSA G NV++
Sbjct: 143 DIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEK 188
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 65/107 (60%), Gaps = 1/107 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+++ LQLWDTAG ERFRSL ++ RD+ ++++D+TN SF WI ++ S+
Sbjct: 68 QRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSEN 127
Query: 288 I-IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333
I+L GNK+DL D+R V EE A++ + + ETSA G N+
Sbjct: 128 PDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISH 174
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 95/214 (44%), Gaps = 50/214 (23%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE----------DRTVRLQLWDTAGQE 96
VGKTS++ ++ F++ + T+GIDF K + + + LQLWDTAG E
Sbjct: 22 VGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE 81
Query: 97 RFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTH 156
RFRSL ++ RD+ ++++D+TN SF WI ++
Sbjct: 82 RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQM-------------------- 121
Query: 157 LSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF 216
HA S + I+L GNK+DL D+R V EE A++ + +
Sbjct: 122 ----HAYS----------------ENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPY 161
Query: 217 IETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY 250
ETSA G N+ L D + RS+ S+
Sbjct: 162 FETSAANGTNISHAIEMLLDLIMKRMERSVDKSW 195
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 50/193 (25%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR----------TVRLQLWDTAGQE 96
VGKT+ + R+ + F+ + T+GIDF K + + + V LQLWDTAG E
Sbjct: 22 VGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLE 81
Query: 97 RFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTH 156
RFRSL ++ RD+ ++++D+T+ SF W+ +
Sbjct: 82 RFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQL---------------------- 119
Query: 157 LSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF 216
AN++ + I+L+GNK DL D+R+V+ + A++ + +
Sbjct: 120 ----QANAYCENPD--------------IVLIGNKADLPDQREVNERQARELAEKYGIPY 161
Query: 217 IETSAKAGYNVKQ 229
ETSA G NV++
Sbjct: 162 FETSAATGQNVEK 174
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDV 287
+V LQLWDTAG ERFRSL ++ RD+ ++++D+T+ SF W+ ++ +
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333
I+L+GNK DL D+R+V+ + A++ + + ETSA G NV++
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEK 174
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 89/188 (47%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK++L +FMYD F Y+ T D K + L+ V++ + DTAGQE + ++ +Y
Sbjct: 29 VGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYF 87
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + V+ IT SF T+ + + +
Sbjct: 88 RSGEGFLCVFSITEMESFAATADFREQI-------------------------------- 115
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+R + +V +LVGNK+DL DKRQVS EE + +A++ NV ++ETSAK N
Sbjct: 116 --------LRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN 167
Query: 227 VKQVRLQL 234
V +V L
Sbjct: 168 VDKVFFDL 175
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 70/109 (64%), Gaps = 1/109 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSD 286
++V++ + DTAGQE + ++ +Y R + V+ IT SF T+ + + + R + +
Sbjct: 64 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 123
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
V +LVGNK+DL DKRQVS EE + +A++ NV ++ETSAK NV ++F
Sbjct: 124 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 172
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 89/188 (47%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK++L +FMYD F Y+ T D K + L+ V++ + DTAGQE + ++ +Y
Sbjct: 17 VGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYF 75
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + V+ IT SF T+ + + +
Sbjct: 76 RSGEGFLCVFSITEMESFAATADFREQI-------------------------------- 103
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+R + +V +LVGNK+DL DKRQVS EE + +A++ NV ++ETSAK N
Sbjct: 104 --------LRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN 155
Query: 227 VKQVRLQL 234
V +V L
Sbjct: 156 VDKVFFDL 163
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 70/109 (64%), Gaps = 1/109 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSD 286
++V++ + DTAGQE + ++ +Y R + V+ IT SF T+ + + + R + +
Sbjct: 52 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 111
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
V +LVGNK+DL DKRQVS EE + +A++ NV ++ETSAK NV ++F
Sbjct: 112 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 160
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 89/188 (47%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK++L +FMYD F Y+ T D K + L+ V++ + DTAGQE + ++ +Y
Sbjct: 25 VGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYF 83
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + V+ IT SF T+ + + +
Sbjct: 84 RSGEGFLCVFSITEMESFAATADFREQI-------------------------------- 111
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+R + +V +LVGNK+DL DKRQVS EE + +A++ NV ++ETSAK N
Sbjct: 112 --------LRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN 163
Query: 227 VKQVRLQL 234
V +V L
Sbjct: 164 VDKVFFDL 171
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 70/109 (64%), Gaps = 1/109 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSD 286
++V++ + DTAGQE + ++ +Y R + V+ IT SF T+ + + + R + +
Sbjct: 60 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 119
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
V +LVGNK+DL DKRQVS EE + +A++ NV ++ETSAK NV ++F
Sbjct: 120 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 168
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 50/193 (25%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR----------TVRLQLWDTAGQE 96
VGKT+ + R+ + F+ + T+GIDF K + + + V LQLWDTAG E
Sbjct: 22 VGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLE 81
Query: 97 RFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTH 156
RFRSL ++ RD+ ++++D+T+ SF W+ +
Sbjct: 82 RFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQL---------------------- 119
Query: 157 LSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF 216
AN++ + I+L+GNK DL D+R+V+ + A++ + +
Sbjct: 120 ----QANAYCENPD--------------IVLIGNKADLPDQREVNERQARELAEKYGIPY 161
Query: 217 IETSAKAGYNVKQ 229
ETSA G NV++
Sbjct: 162 FETSAATGQNVEK 174
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDV 287
+V LQLWDTAG ERFRSL ++ RD+ ++++D+T+ SF W+ ++ +
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333
I+L+GNK DL D+R+V+ + A++ + + ETSA G NV++
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEK 174
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 39/182 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+SL+ R++ + FD+ TIG++FL+K + ++ V +Q+WDTAGQERFRSL +
Sbjct: 22 VGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFY 81
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R S ++ + + ++ SF S W + F + +
Sbjct: 82 RGSDCCLLTFSVDDSQSFQNLSNW--------------------KKEFIYYA-------- 113
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGY 225
DV+ +I+ GNKTD+ + RQVSTEE + K+ + + ETSAK
Sbjct: 114 -------DVKEPESFPFVIL--GNKTDIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDST 163
Query: 226 NV 227
NV
Sbjct: 164 NV 165
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 66/122 (54%), Gaps = 14/122 (11%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW------IDDVRTER 283
V +Q+WDTAGQERFRSL + R S ++ + + ++ SF S W DV+
Sbjct: 60 VTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPE 119
Query: 284 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGYNVKQLF----RRV 338
+I+ GNKTD+ + RQVSTEE + K+ + + ETSAK NV F RR+
Sbjct: 120 SFPFVIL--GNKTDIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176
Query: 339 AA 340
A
Sbjct: 177 LA 178
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 88/188 (46%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK++L +FMYD F Y+ T D K + L+ V++ + DTAGQE + ++ +Y
Sbjct: 15 VGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYF 73
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + V+ IT SF T+ + + +
Sbjct: 74 RSGEGFLCVFSITEMESFAATADFREQI-------------------------------- 101
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+R + +V +LVGNK+DL DKRQVS EE + +A + NV ++ETSAK N
Sbjct: 102 --------LRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRAN 153
Query: 227 VKQVRLQL 234
V +V L
Sbjct: 154 VDKVFFDL 161
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 69/109 (63%), Gaps = 1/109 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSD 286
++V++ + DTAGQE + ++ +Y R + V+ IT SF T+ + + + R + +
Sbjct: 50 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 109
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
V +LVGNK+DL DKRQVS EE + +A + NV ++ETSAK NV ++F
Sbjct: 110 VPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVF 158
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 50/193 (25%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR----------TVRLQLWDTAGQE 96
VGKT+ + R+ + F+ + T+GIDF K + + + V LQLWDTAG E
Sbjct: 22 VGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLE 81
Query: 97 RFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTH 156
RFRSL ++ RD+ ++ +D+T+ SF W +
Sbjct: 82 RFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQL---------------------- 119
Query: 157 LSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF 216
AN++ + I+L+GNK DL D+R+V+ + A++ + +
Sbjct: 120 ----QANAYCENPD--------------IVLIGNKADLPDQREVNERQARELAEKYGIPY 161
Query: 217 IETSAKAGYNVKQ 229
ETSA G NV++
Sbjct: 162 FETSAATGQNVEK 174
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDV 287
+V LQLWDTAG ERFRSL ++ RD+ ++ +D+T+ SF W ++ +
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP 128
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333
I+L+GNK DL D+R+V+ + A++ + + ETSA G NV++
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEK 174
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 39/182 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+SL+ R++ + FD TIG++FL+K + ++ V +Q+WDTAGQERFRSL +
Sbjct: 20 VGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R S ++ + + ++ SF S W + F + +
Sbjct: 80 RGSDCCLLTFSVDDSQSFQNLSNW--------------------KKEFIYYA-------- 111
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGY 225
DV+ +I+ GNK D+S+ RQVSTEE + ++ + + ETSAK
Sbjct: 112 -------DVKEPESFPFVIL--GNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDAT 161
Query: 226 NV 227
NV
Sbjct: 162 NV 163
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 66/122 (54%), Gaps = 14/122 (11%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW------IDDVRTER 283
V +Q+WDTAGQERFRSL + R S ++ + + ++ SF S W DV+
Sbjct: 58 VTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPE 117
Query: 284 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGYNVKQLF----RRV 338
+I+ GNK D+S+ RQVSTEE + ++ + + ETSAK NV F RRV
Sbjct: 118 SFPFVIL--GNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174
Query: 339 AA 340
A
Sbjct: 175 LA 176
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 39/182 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+SL+ R++ + FD TIG++FL+K + ++ V +Q+WDTAGQERFRSL +
Sbjct: 18 VGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFY 77
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R S ++ + + ++ SF S W + F + +
Sbjct: 78 RGSDCCLLTFSVDDSQSFQNLSNW--------------------KKEFIYYA-------- 109
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGY 225
DV+ +I+ GNK D+S+ RQVSTEE + ++ + + ETSAK
Sbjct: 110 -------DVKEPESFPFVIL--GNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDAT 159
Query: 226 NV 227
NV
Sbjct: 160 NV 161
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 66/122 (54%), Gaps = 14/122 (11%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW------IDDVRTER 283
V +Q+WDTAGQERFRSL + R S ++ + + ++ SF S W DV+
Sbjct: 56 VTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPE 115
Query: 284 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGYNVKQLF----RRV 338
+I+ GNK D+S+ RQVSTEE + ++ + + ETSAK NV F RRV
Sbjct: 116 SFPFVIL--GNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172
Query: 339 AA 340
A
Sbjct: 173 LA 174
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 50/193 (25%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR----------TVRLQLWDTAGQE 96
VGKT+ + R+ + F+ + T+GIDF K + + + V LQLWDTAG E
Sbjct: 22 VGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLE 81
Query: 97 RFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTH 156
RFRSL ++ RD+ ++ +D+T+ SF W +
Sbjct: 82 RFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQL---------------------- 119
Query: 157 LSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF 216
AN++ + I+L+GNK DL D+R+V+ + A++ + +
Sbjct: 120 ----QANAYCENPD--------------IVLIGNKADLPDQREVNERQARELAEKYGIPY 161
Query: 217 IETSAKAGYNVKQ 229
ETSA G NV++
Sbjct: 162 FETSAATGQNVEK 174
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDV 287
+V LQLWDTAG ERFRSL ++ RD+ ++ +D+T+ SF W ++ +
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP 128
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333
I+L+GNK DL D+R+V+ + A++ + + ETSA G NV++
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEK 174
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 88/188 (46%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK++L +FMYD F Y+ T D K + L+ V++ + DTAG E + ++ +Y
Sbjct: 17 VGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYF 75
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + V+ IT SF T+ + + +
Sbjct: 76 RSGEGFLCVFSITEMESFAATADFREQI-------------------------------- 103
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+R + +V +LVGNK+DL DKRQVS EE + +A++ NV ++ETSAK N
Sbjct: 104 --------LRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN 155
Query: 227 VKQVRLQL 234
V +V L
Sbjct: 156 VDKVFFDL 163
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 69/109 (63%), Gaps = 1/109 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSD 286
++V++ + DTAG E + ++ +Y R + V+ IT SF T+ + + + R + +
Sbjct: 52 EEVQIDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 111
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
V +LVGNK+DL DKRQVS EE + +A++ NV ++ETSAK NV ++F
Sbjct: 112 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 160
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 39/182 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+SL+ R++ + FD+ TIG++FL++ + ++ R V LQ+WDTAGQERF+SL +
Sbjct: 18 VGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFY 77
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++ + + + SF W + F + +
Sbjct: 78 RGADCCLLTFSVDDRQSFENLGNW--------------------QKEFIYYA-------- 109
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGY 225
DV+ +++ GNK D D RQV+TEE + E + ++ETSAK
Sbjct: 110 -------DVKDPEHFPFVVL--GNKVDKED-RQVTTEEAQTWCMENGDYPYLETSAKDDT 159
Query: 226 NV 227
NV
Sbjct: 160 NV 161
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW------IDDVRTER 283
V LQ+WDTAGQERF+SL + R + ++ + + + SF W DV+
Sbjct: 56 VTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPE 115
Query: 284 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGYNVKQLF 335
+++ GNK D D RQV+TEE + E + ++ETSAK NV F
Sbjct: 116 HFPFVVL--GNKVDKED-RQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAF 165
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 231 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVII 289
RL + DTAGQE F ++ Y+R ++V+ +T+ SF + K+ + R + + +
Sbjct: 54 RLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPM 113
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
+L+GNK DL +RQV+ EEG++ A++L V ++E SAK NV Q F
Sbjct: 114 ILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAF 159
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 41/181 (22%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L +F+ F Y TI D +K ++DR RL + DTAGQE F ++ Y+R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
++V+ +T+ SF + K+ +
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQI---------------------------------- 102
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
+R + + ++L+GNK DL +RQV+ EEG++ A++L V ++E SAK NV
Sbjct: 103 ------LRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVD 156
Query: 229 Q 229
Q
Sbjct: 157 Q 157
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 87/189 (46%), Gaps = 42/189 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK++L +FMYD F Y+ T D K + L+ V++ + DTAG E + ++ +Y
Sbjct: 18 VGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYF 76
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
R ++V+ IT SF T+++ + + R + D I +LV
Sbjct: 77 RSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLV------------------ 118
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 225
VGNK+DL ++RQV EE KA+E V ++ETSAK
Sbjct: 119 ----------------------VGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRA 156
Query: 226 NVKQVRLQL 234
NV +V L
Sbjct: 157 NVDKVFFDL 165
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 75/126 (59%), Gaps = 2/126 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSD 286
++V++ + DTAG E + ++ +Y R ++V+ IT SF T+++ + + R + D
Sbjct: 53 EEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEED 112
Query: 287 VI-IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
I +++VGNK+DL ++RQV EE KA+E V ++ETSAK NV ++F + +
Sbjct: 113 KIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 172
Query: 346 DSTENK 351
+ENK
Sbjct: 173 KMSENK 178
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 87/189 (46%), Gaps = 42/189 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK++L +FMYD F Y+ T D K + L+ V++ + DTAG E + ++ +Y
Sbjct: 14 VGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYF 72
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
R ++V+ IT SF T+++ + + R + D I +LV
Sbjct: 73 RSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLV------------------ 114
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 225
VGNK+DL ++RQV EE KA+E V ++ETSAK
Sbjct: 115 ----------------------VGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRA 152
Query: 226 NVKQVRLQL 234
NV +V L
Sbjct: 153 NVDKVFFDL 161
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 75/126 (59%), Gaps = 2/126 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSD 286
++V++ + DTAG E + ++ +Y R ++V+ IT SF T+++ + + R + D
Sbjct: 49 EEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEED 108
Query: 287 VI-IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
I +++VGNK+DL ++RQV EE KA+E V ++ETSAK NV ++F + +
Sbjct: 109 KIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 168
Query: 346 DSTENK 351
+ENK
Sbjct: 169 KMSENK 174
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERG 284
+ +Q L++ DTAG E+F ++ Y+++ +VY IT ++F+ + + R +
Sbjct: 47 DCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT 106
Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGYNVKQLF 335
DV ++LVGNK DL D+R V E+G+ A++ N F+E+SAK+ NV ++F
Sbjct: 107 EDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 100/221 (45%), Gaps = 65/221 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+R++KLV LG VGK++L +F+ F + Y TI +++Y+ +
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTI---------------EDSYRKQVE 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
+D + L++ DTAG E+F ++ Y+++ +VY IT ++F+
Sbjct: 46 VDC---------QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFND---- 92
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
+ D+R + +R + DV ++LVGN
Sbjct: 93 LQDLREQI------------------------------------LRVKDTEDVPMILVGN 116
Query: 191 KTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGYNVKQV 230
K DL D+R V E+G+ A++ N F+E+SAK+ NV ++
Sbjct: 117 KCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEI 157
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERG 284
+ +Q L++ DTAG E+F ++ Y+++ +VY IT ++F+ + + R +
Sbjct: 47 DCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT 106
Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGYNVKQLF 335
DV ++LVGNK DL D+R V E+G+ A++ N F+E+SAK+ NV ++F
Sbjct: 107 EDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 99/221 (44%), Gaps = 65/221 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+R++KLV LG VGK++L +F+ F Y TI +++Y+ +
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI---------------EDSYRKQVE 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
+D + L++ DTAG E+F ++ Y+++ +VY IT ++F+
Sbjct: 46 VDC---------QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFND---- 92
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
+ D+R + +R + DV ++LVGN
Sbjct: 93 LQDLREQI------------------------------------LRVKDTEDVPMILVGN 116
Query: 191 KTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGYNVKQV 230
K DL D+R V E+G+ A++ N F+E+SAK+ NV ++
Sbjct: 117 KCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEI 157
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERG 284
+ +Q L++ DTAG E+F ++ Y+++ +VY IT ++F+ + + R +
Sbjct: 47 DAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT 106
Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL-NVMFIETSAKAGYNVKQLF 335
DV ++LVGNK DL D+R V E+G+ A++ N F+E+SAK+ NV ++F
Sbjct: 107 DDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 99/221 (44%), Gaps = 65/221 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+R++KLV LG VGK++L +F+ F Y TI +++Y+ +
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI---------------EDSYRKQVE 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
+D + L++ DTAG E+F ++ Y+++ +VY IT ++F+
Sbjct: 46 VDA---------QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFND---- 92
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
+ D+R + +R + DV ++LVGN
Sbjct: 93 LQDLREQI------------------------------------LRVKDTDDVPMILVGN 116
Query: 191 KTDLSDKRQVSTEEGERKAKEL-NVMFIETSAKAGYNVKQV 230
K DL D+R V E+G+ A++ N F+E+SAK+ NV ++
Sbjct: 117 KCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEI 157
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERG 284
+ +Q L++ DTAG E+F ++ Y+++ +VY IT ++F+ + + R +
Sbjct: 49 DAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT 108
Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL-NVMFIETSAKAGYNVKQLF 335
DV ++LVGNK DL D+R V E+G+ A++ N F+E+SAK+ NV ++F
Sbjct: 109 DDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 160
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 99/221 (44%), Gaps = 65/221 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+R++KLV LG VGK++L +F+ F Y TI +++Y+ +
Sbjct: 3 MREYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTI---------------EDSYRKQVE 47
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
+D + L++ DTAG E+F ++ Y+++ +VY IT ++F+
Sbjct: 48 VDA---------QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFND---- 94
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
+ D+R + +R + DV ++LVGN
Sbjct: 95 LQDLREQI------------------------------------LRVKDTDDVPMILVGN 118
Query: 191 KTDLSDKRQVSTEEGERKAKEL-NVMFIETSAKAGYNVKQV 230
K DL D+R V E+G+ A++ N F+E+SAK+ NV ++
Sbjct: 119 KCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEI 159
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 64/130 (49%), Gaps = 12/130 (9%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYI 106
GKTSL T F ++F Y+ TIG+DF + + L + V LQ+WD GQ ++ YI
Sbjct: 18 GKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYI 77
Query: 107 RDSTVAVVVYDITNANSFHQTSKW---IDDVRTERGSDVIIMLVGS---IETNFT----- 155
+ ++VYDITN SF W + V E + ++ LVG+ +E T
Sbjct: 78 YGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEK 137
Query: 156 HLSFHHANSF 165
HL F N F
Sbjct: 138 HLRFCQENGF 147
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW---IDDVRTERGSD 286
V LQ+WD GQ ++ YI + ++VYDITN SF W + V E +
Sbjct: 56 VTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQ 115
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
++ LVGNK DL R + E+ R +E SAK G +V F++VAA + G+
Sbjct: 116 PLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT----SKWIDDVRT 281
N ++ LQL DTAGQ+ + +Y D ++VY +T+ SF K +D V
Sbjct: 50 NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK 109
Query: 282 ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 341
+ + IMLVGNK DL +R +S EEG+ A+ N F+E+SAK +FRR+
Sbjct: 110 VQ---IPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166
Query: 342 LPGMD 346
MD
Sbjct: 167 AEKMD 171
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 91/208 (43%), Gaps = 64/208 (30%)
Query: 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL 74
K+ LG +SVGK+SL +F+ F ++Y TI +NT+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI---------------ENTF--------- 43
Query: 75 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134
+K + + + LQL DTAGQ+ + +Y D ++VY +T+ SF + +
Sbjct: 44 TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSF-------EVI 96
Query: 135 RTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL 194
+ G ++ +VG ++ + IMLVGNK DL
Sbjct: 97 KVIHGK--LLDMVGKVQ-------------------------------IPIMLVGNKKDL 123
Query: 195 SDKRQVSTEEGERKAKELNVMFIETSAK 222
+R +S EEG+ A+ N F+E+SAK
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAK 151
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 65/114 (57%), Gaps = 7/114 (6%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT---SKWIDDVRTERGSD 286
V +++ DTAGQE ++R V+VYDIT+ SF + +D+++ + +
Sbjct: 76 VSMEILDTAGQEDTIQR-EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPK--N 132
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY-NVKQLFRRVA 339
V ++LVGNK DL RQVSTEEGE+ A EL F E SA G N+ ++F +
Sbjct: 133 VTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELC 186
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 95/221 (42%), Gaps = 66/221 (29%)
Query: 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL 74
KL G VGK++L+ RF+ F Y T+ ++TY+ ID
Sbjct: 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTL---------------ESTYRHQATID-- 72
Query: 75 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134
D V +++ DTAGQE ++R V+VYDIT+ SF +
Sbjct: 73 -------DEVVSMEILDTAGQEDTIQR-EGHMRWGEGFVLVYDITDRGSFEE-------- 116
Query: 135 RTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL 194
++ + +I +D+++ + +V ++LVGNK DL
Sbjct: 117 ---------VLPLKNI---------------------LDEIKKPK--NVTLILVGNKADL 144
Query: 195 SDKRQVSTEEGERKAKELNVMFIETSAKAGY-NVKQVRLQL 234
RQVSTEEGE+ A EL F E SA G N+ ++ +L
Sbjct: 145 DHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL 185
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG--SDVII 289
LQ+ DT G +F ++ I ++VY IT+ S + + + +G + I
Sbjct: 53 LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPI 112
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
MLVGNK D S R+V + E E A+ F+ETSAK +NVK+LF+ +
Sbjct: 113 MLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 40/190 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+SL+ RF+ +F +Y T+ D + + + LQ+ DT G +F ++ I
Sbjct: 14 VGKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSI 72
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
++VY IT+ S + + I + G +E+
Sbjct: 73 SKGHAFILVYSITSRQSLEELKPIYEQ---------ICEIKGDVES-------------- 109
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+ IMLVGNK D S R+V + E E A+ F+ETSAK +N
Sbjct: 110 ----------------IPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHN 153
Query: 227 VKQVRLQLWD 236
VK++ +L +
Sbjct: 154 VKELFQELLN 163
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 90/216 (41%), Gaps = 65/216 (30%)
Query: 8 GNPLRKF-KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQ 66
G PL ++ K+V LG + VGKTSL +F+ F Y T+ +NTY
Sbjct: 18 GMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTV---------------ENTY- 61
Query: 67 ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 126
SK + L L L DTAGQ+ + L S+I V+VY +T+ +SF
Sbjct: 62 --------SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQ- 112
Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
IE+ + L H + V ++
Sbjct: 113 ----------------------VIESLYQKLHEGHGK-----------------TRVPVV 133
Query: 187 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
LVGNK DLS +R+V EG++ A+ F+E+SA+
Sbjct: 134 LVGNKADLSPEREVQAVEGKKLAESWGATFMESSAR 169
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDV 287
+ L L DTAGQ+ + L S+I V+VY +T+ +SF + G + V
Sbjct: 71 EFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRV 130
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
++LVGNK DLS +R+V EG++ A+ F+E+SA+ + +F +V
Sbjct: 131 PVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKV 181
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 1/124 (0%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVI 288
RL + DTAGQE F ++ Y+R ++V+ I + SF++ K + R + D
Sbjct: 57 ARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFP 116
Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDST 348
++LVGNK DL +RQV E +V + E SAK NV + F ++ A+
Sbjct: 117 VVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQ 176
Query: 349 ENKP 352
E P
Sbjct: 177 ELPP 180
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 82/201 (40%), Gaps = 41/201 (20%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L +F+ F + Y TI D +K ++ RL + DTAGQE F ++ Y+R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
++V+ I + SF++ K FT +
Sbjct: 81 GHGFLLVFAINDRQSFNEVGKL-----------------------FTQI----------- 106
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
+R + D ++LVGNK DL +RQV E +V + E SAK NV
Sbjct: 107 ------LRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVD 160
Query: 229 QVRLQLWDTAGQERFRSLIPS 249
+ QL + + + L PS
Sbjct: 161 EAFEQLVRAVRKYQEQELPPS 181
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT----SKWIDDVRT 281
N ++ LQL DTAGQ+ + +Y D ++VY +T+ SF K +D V
Sbjct: 45 NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK 104
Query: 282 ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
+ + IMLVGNK DL +R +S EEG+ A+ N F+E+SAK +FRR+
Sbjct: 105 VQ---IPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 158
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 91/208 (43%), Gaps = 64/208 (30%)
Query: 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL 74
K+ LG +SVGK+SL +F+ F ++Y TI +NT+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI---------------ENTF--------- 38
Query: 75 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134
+K + + + LQL DTAGQ+ + +Y D ++VY +T+ SF + +
Sbjct: 39 TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSF-------EVI 91
Query: 135 RTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL 194
+ G ++ +VG ++ + IMLVGNK DL
Sbjct: 92 KVIHGK--LLDMVGKVQ-------------------------------IPIMLVGNKKDL 118
Query: 195 SDKRQVSTEEGERKAKELNVMFIETSAK 222
+R +S EEG+ A+ N F+E+SAK
Sbjct: 119 HMERVISYEEGKALAESWNAAFLESSAK 146
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT----SKWIDDVRT 281
N ++ LQL DTAGQ+ + +Y D ++VY +T+ SF K +D V
Sbjct: 50 NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK 109
Query: 282 ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
+ + IMLVGNK DL +R +S EEG+ A+ N F+E+SAK +FRR+
Sbjct: 110 VQ---IPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 91/208 (43%), Gaps = 64/208 (30%)
Query: 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL 74
K+ LG +SVGK+SL +F+ F ++Y TI +NT+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI---------------ENTF--------- 43
Query: 75 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134
+K + + + LQL DTAGQ+ + +Y D ++VY +T+ SF + +
Sbjct: 44 TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSF-------EVI 96
Query: 135 RTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL 194
+ G ++ +VG ++ + IMLVGNK DL
Sbjct: 97 KVIHGK--LLDMVGKVQ-------------------------------IPIMLVGNKKDL 123
Query: 195 SDKRQVSTEEGERKAKELNVMFIETSAK 222
+R +S EEG+ A+ N F+E+SAK
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAK 151
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT----SKWIDDVRT 281
N ++ LQL DTAGQ+ + +Y D ++VY +T+ SF K +D V
Sbjct: 48 NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK 107
Query: 282 ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
+ + IMLVGNK DL +R +S EEG+ A+ N F+E+SAK +FRR+
Sbjct: 108 VQ---IPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 161
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 90/208 (43%), Gaps = 64/208 (30%)
Query: 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL 74
K+ LG +SVGK+SL +F+ F ++ TI +NT+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTI---------------ENTF--------- 41
Query: 75 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134
+K + + + LQL DTAGQ+ + +Y D ++VY +T+ SF + +
Sbjct: 42 TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSF-------EVI 94
Query: 135 RTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL 194
+ G ++ +VG ++ + IMLVGNK DL
Sbjct: 95 KVIHGK--LLDMVGKVQ-------------------------------IPIMLVGNKKDL 121
Query: 195 SDKRQVSTEEGERKAKELNVMFIETSAK 222
+R +S EEG+ A+ N F+E+SAK
Sbjct: 122 HMERVISYEEGKALAESWNAAFLESSAK 149
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 76/147 (51%), Gaps = 6/147 (4%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
GE + K + + +E + Y N +++ +WDTAG E+F L Y ++ A++++D+
Sbjct: 27 GEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDV 86
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR-QVSTEEGERKAKELNVMFIE 322
T+ ++ W D+ ++ I+L GNK D+ +++ + T RK N+ + +
Sbjct: 87 TSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKERKVKAKTITFHRKK---NLQYYD 142
Query: 323 TSAKAGYNVKQLFRRVAAALPGMDSTE 349
SAK+ YN ++ F +A L G E
Sbjct: 143 ISAKSNYNFEKPFLWLARKLAGNPQLE 169
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 46/188 (24%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKT+ + R + F+ Y ATIG++ + Y ++ +WDTAG E+F L Y
Sbjct: 16 GKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDGYYI 75
Query: 108 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ 167
++ A++++D+T+ ++ W D LV E
Sbjct: 76 NAQCAIIMFDVTSRITYKNVPNWHRD------------LVRVCE---------------- 107
Query: 168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKR-QVSTEEGERKAKELNVMFIETSAKAGYN 226
++ I+L GNK D+ +++ + T RK N+ + + SAK+ YN
Sbjct: 108 --------------NIPIVLCGNKVDVKERKVKAKTITFHRKK---NLQYYDISAKSNYN 150
Query: 227 VKQVRLQL 234
++ L L
Sbjct: 151 FEKPFLWL 158
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 3/109 (2%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS--DVII 289
LQ+ DT G +F ++ I ++V+ +T+ S + + +GS D+ +
Sbjct: 58 LQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPV 117
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
MLVGNK D +R+V T E + A+E F+ETSAK YNVK+LF+ +
Sbjct: 118 MLVGNKCD-ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQEL 165
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 41/182 (22%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K+SL+ RF+ +F +TY TI D + + + LQ+ DT G +F ++ I
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIE-DTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
++V+ +T+ S + +I+ + GS+E
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYK---------LIVQIKGSVE----------------- 113
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
D+ +MLVGNK D +R+V T E + A+E F+ETSAK YNVK
Sbjct: 114 -------------DIPVMLVGNKCD-ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVK 159
Query: 229 QV 230
++
Sbjct: 160 EL 161
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L++ DTAG E+F S+ YI++ ++VY + N SF D + R +R V ++
Sbjct: 53 LEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVI 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
LVGNK DL +R+VS+ EG A+E F+ETSAK+ V +LF +
Sbjct: 113 LVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 41/175 (23%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L +F+ +F Y TI DF K + ++ L++ DTAG E+F S+ YI++
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
++VY + N SF D +
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQI---------------------------------- 100
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA 223
+R +R V ++LVGNK DL +R+VS+ EG A+E F+ETSAK+
Sbjct: 101 ------IRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKS 149
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 76/147 (51%), Gaps = 6/147 (4%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
GE + K + + +E + Y N +++ +WDTAG E+F L Y ++ A++++D+
Sbjct: 28 GEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDV 87
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR-QVSTEEGERKAKELNVMFIE 322
T+ ++ W D+ ++ I+L GNK D+ +++ + T RK N+ + +
Sbjct: 88 TSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKERKVKAKTITFHRKK---NLQYYD 143
Query: 323 TSAKAGYNVKQLFRRVAAALPGMDSTE 349
SAK+ YN ++ F +A L G E
Sbjct: 144 ISAKSNYNFEKPFLWLARKLAGNPQLE 170
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 46/188 (24%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKT+ + R + F+ Y ATIG++ + Y ++ +WDTAG E+F L Y
Sbjct: 17 GKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDGYYI 76
Query: 108 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ 167
++ A++++D+T+ ++ W D LV E
Sbjct: 77 NAQCAIIMFDVTSRITYKNVPNWHRD------------LVRVCE---------------- 108
Query: 168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKR-QVSTEEGERKAKELNVMFIETSAKAGYN 226
++ I+L GNK D+ +++ + T RK N+ + + SAK+ YN
Sbjct: 109 --------------NIPIVLCGNKVDVKERKVKAKTITFHRKK---NLQYYDISAKSNYN 151
Query: 227 VKQVRLQL 234
++ L L
Sbjct: 152 FEKPFLWL 159
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 56/218 (25%)
Query: 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL 74
K V +G+ +VGKTSL+ + + + Y T +FDN + A + +D
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPT--------------AFDN-FSAVVSVD-- 64
Query: 75 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDD 133
R VRLQL DTAGQ+ F L P ++ + ++ + + + +SF S KW+ +
Sbjct: 65 -------GRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPE 117
Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
+R I+LVG+ S +DV+ V+I L D
Sbjct: 118 IRC-HCPKAPIILVGT------------------QSDLREDVK------VLIEL-----D 147
Query: 194 LSDKRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQV 230
++ V E + A+E+ +IE SA N+K+V
Sbjct: 148 KCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEV 185
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 15/130 (11%)
Query: 220 SAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDD 278
SA + + VRLQL DTAGQ+ F L P ++ + ++ + + + +SF S KW+ +
Sbjct: 58 SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPE 117
Query: 279 VRTERGSDVIIMLVGNKTDL------------SDKRQVSTEEGERKAKELNVM-FIETSA 325
+R I+LVG ++DL ++ V E + A+E+ +IE SA
Sbjct: 118 IRC-HCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSA 176
Query: 326 KAGYNVKQLF 335
N+K++F
Sbjct: 177 LTQKNLKEVF 186
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 93/231 (40%), Gaps = 78/231 (33%)
Query: 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
R K V +G+ +VGKT ++ + ++F Y T+ FDN
Sbjct: 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV--------------FDN-------- 42
Query: 72 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KW 130
S + ++ TV L LWDTAGQE + L P R + V ++ + + + S+ + KW
Sbjct: 43 --FSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 100
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
I ++R H+A V I+LVG
Sbjct: 101 IPELR------------------------HYA------------------PGVPIILVGT 118
Query: 191 KTDLSDKRQ----------VSTEEGERKAKEL-NVMFIETSAKAGYNVKQV 230
K DL D +Q ++T +GE K + + ++IE S+K NVK V
Sbjct: 119 KLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAV 169
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 13/118 (11%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVI 288
V L LWDTAGQE + L P R + V ++ + + + S+ + KWI ++R V
Sbjct: 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVP 112
Query: 289 IMLVGNKTDLSDKRQ----------VSTEEGERKAKEL-NVMFIETSAKAGYNVKQLF 335
I+LVG K DL D +Q ++T +GE K + + ++IE S+K NVK +F
Sbjct: 113 IILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 80/158 (50%), Gaps = 12/158 (7%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
GE + K + + +E + Y N +++ +WDTAG E+F L Y ++ A++++D+
Sbjct: 35 GEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDV 94
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR-QVSTEEGERKAKELNVMFIE 322
T+ ++ W D+ ++ I+L GNK D+ +++ + T RK N+ + +
Sbjct: 95 TSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKERKVKAKTITFHRKK---NLQYYD 150
Query: 323 TSAKAGYNVKQLFRRVAAALPG------MDSTENKPPE 354
SAK+ YN ++ F +A L G + S PPE
Sbjct: 151 ISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPE 188
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 80/188 (42%), Gaps = 46/188 (24%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKT+ + R + F+ Y ATIG++ + Y ++ +WDTAG E+F L Y
Sbjct: 24 GKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDGYYI 83
Query: 108 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ 167
++ A++++D+T+ ++ W D+
Sbjct: 84 NAQCAIIMFDVTSRITYKNVPNWHRDL--------------------------------- 110
Query: 168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKR-QVSTEEGERKAKELNVMFIETSAKAGYN 226
VR ++ I+L GNK D+ +++ + T RK N+ + + SAK+ YN
Sbjct: 111 -------VRV--CENIPIVLCGNKVDVKERKVKAKTITFHRKK---NLQYYDISAKSNYN 158
Query: 227 VKQVRLQL 234
++ L L
Sbjct: 159 FEKPFLWL 166
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 13/133 (9%)
Query: 215 MFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS- 273
+F SA N V L LWDTAGQE + L P R + V ++ + + + S+ S
Sbjct: 41 VFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSK 100
Query: 274 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQ----------VSTEEGERKAKELNV-MFIE 322
KWI +++ V I+LVG K DL D +Q ++T +GE K + +IE
Sbjct: 101 KWIPELK-HYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIE 159
Query: 323 TSAKAGYNVKQLF 335
S+K+ NVK +F
Sbjct: 160 CSSKSQENVKGVF 172
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 91/231 (39%), Gaps = 78/231 (33%)
Query: 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
R K V +G+ +VGKT L+ + ++F Y T+ FDN
Sbjct: 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV--------------FDN-------- 44
Query: 72 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KW 130
S + + TV L LWDTAGQE + L P R + V ++ + + + S+ S KW
Sbjct: 45 --FSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKW 102
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
I +++ H+A V I+LVG
Sbjct: 103 IPELK------------------------HYA------------------PGVPIVLVGT 120
Query: 191 KTDLSDKRQ----------VSTEEGERKAKELNV-MFIETSAKAGYNVKQV 230
K DL D +Q ++T +GE K + +IE S+K+ NVK V
Sbjct: 121 KLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGV 171
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 98/219 (44%), Gaps = 65/219 (29%)
Query: 14 FKLVFLGEQSVGKTSLITRF--MYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
+++V +GEQ VGK++L F ++DS D+ + ++G ++TY+ T+ +
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE--VLG-------------EDTYERTLMV 51
Query: 72 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
D S T+ L L +W+ G+ + L ++ ++VY IT+ SF
Sbjct: 52 DGESATIIL------LDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASF------- 96
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
E+ S++ I L R + D+ I+LVGNK
Sbjct: 97 -----EKASELRIQLR----------------------------RARQTEDIPIILVGNK 123
Query: 192 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
+DL R+VS EG A + FIETSA +NVK++
Sbjct: 124 SDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKEL 162
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 3/107 (2%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS-DVI 288
+ L +W+ G+ + L ++ ++VY IT+ SF + S+ +R R + D+
Sbjct: 59 ILLDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP 116
Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
I+LVGNK+DL R+VS EG A + FIETSA +NVK+LF
Sbjct: 117 IILVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELF 163
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 97/219 (44%), Gaps = 65/219 (29%)
Query: 14 FKLVFLGEQSVGKTSLITRF--MYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
+++V +GEQ VGK++L F ++DS D+ + ++G ++TY+ T+ +
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE--VLG-------------EDTYERTLMV 51
Query: 72 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
D S T+ L L +W+ G+ + L ++ ++VY IT+ SF + S+
Sbjct: 52 DGESATIIL------LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELR 103
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
+R R ++ D+ I+LVGNK
Sbjct: 104 IQLRRARQTE----------------------------------------DIPIILVGNK 123
Query: 192 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
+DL R+VS EG A + FIETSA +NVK++
Sbjct: 124 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL 162
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 224 GYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER 283
G + + L +W+ G+ + L ++ ++VY IT+ SF + S+ +R R
Sbjct: 53 GESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR 110
Query: 284 GS-DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
+ D+ I+LVGNK+DL R+VS EG A + FIETSA +NVK+LF
Sbjct: 111 QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 163
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 98/219 (44%), Gaps = 65/219 (29%)
Query: 14 FKLVFLGEQSVGKTSLITRF--MYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
+++V +GEQ VGK++L F ++DS D+ + ++G ++TY+ T+ +
Sbjct: 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE--VLG-------------EDTYERTLMV 82
Query: 72 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
D S T+ L L +W+ G+ + L ++ ++VY IT+ SF
Sbjct: 83 DGESATIIL------LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASF------- 127
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
E+ S++ I L R + D+ I+LVGNK
Sbjct: 128 -----EKASELRIQLR----------------------------RARQTEDIPIILVGNK 154
Query: 192 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
+DL R+VS EG A + FIETSA +NVK++
Sbjct: 155 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL 193
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 3/116 (2%)
Query: 224 GYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER 283
G + + L +W+ G+ + L ++ ++VY IT+ SF + S+ +R R
Sbjct: 84 GESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR 141
Query: 284 GS-DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
+ D+ I+LVGNK+DL R+VS EG A + FIETSA +NVK+LF +
Sbjct: 142 QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGI 197
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 94/234 (40%), Gaps = 68/234 (29%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
M+S+ G P +FKLV +G+ G T GKT+ + R +
Sbjct: 4 MASAAQ-GEPQVQFKLVLVGD---GGT--------------------GKTTFVKRHLTGE 39
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
F+ Y AT+G++ + ++ +WDTAGQE+F L Y + A++++D+T+
Sbjct: 40 FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS 99
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
++ W D+ VR
Sbjct: 100 RVTYKNVPNWHRDL----------------------------------------VRV--C 117
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
++ I+L GNK D+ D++ + + K N+ + + SAK+ YN ++ L L
Sbjct: 118 ENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWL 169
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 74/146 (50%), Gaps = 4/146 (2%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
GE + K + + +E + N ++ +WDTAGQE+F L Y + A++++D+
Sbjct: 38 GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDV 97
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323
T+ ++ W D+ ++ I+L GNK D+ D++ + + K N+ + +
Sbjct: 98 TSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDI 154
Query: 324 SAKAGYNVKQLFRRVAAALPGMDSTE 349
SAK+ YN ++ F +A L G + E
Sbjct: 155 SAKSNYNFEKPFLWLARKLIGDPNLE 180
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 98/219 (44%), Gaps = 65/219 (29%)
Query: 14 FKLVFLGEQSVGKTSLITRF--MYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
+++V +GEQ VGK++L F ++DS D+ + ++G ++TY+ T+ +
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE--VLG-------------EDTYERTLMV 51
Query: 72 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
D S T+ L L +W+ G+ + L ++ ++VY IT+ SF
Sbjct: 52 DGESATIIL------LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASF------- 96
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
E+ S++ I L R + D+ I+LVGNK
Sbjct: 97 -----EKASELRIQLR----------------------------RARQTEDIPIILVGNK 123
Query: 192 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
+DL R+VS EG A + FIETSA +NVK++
Sbjct: 124 SDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 3/107 (2%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS-DVI 288
+ L +W+ G+ + L ++ ++VY IT+ SF + S+ +R R + D+
Sbjct: 59 ILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP 116
Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
I+LVGNK+DL R+VS EG A + FIETSA +NVK+LF
Sbjct: 117 IILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF 163
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSD 286
++V L LWDTAGQE + L P DS V ++ + I +S KWI +V
Sbjct: 56 RRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEV-LHFCQG 114
Query: 287 VIIMLVGNKTDLSDKRQ------------VSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
V I+LVG K DL + Q V+++EG+ A ++ + E SAK GY V++
Sbjct: 115 VPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVRE 174
Query: 334 LF 335
+F
Sbjct: 175 VF 176
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 92/241 (38%), Gaps = 81/241 (33%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
S GN +R+ KLV +G+ + GKT L+ F Y T+ F+N
Sbjct: 2 SQQVGNSIRR-KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV--------------FEN 46
Query: 64 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
Y A + +D R V L LWDTAGQE + L P DS V ++ + I +S
Sbjct: 47 -YVADVEVD---------GRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDS 96
Query: 124 FHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
KWI +V L F
Sbjct: 97 LENVQEKWIAEV----------------------LHFCQG-------------------- 114
Query: 183 VIIMLVGNKTDLSDKRQ------------VSTEEGERKAKELNVM-FIETSAKAGYNVKQ 229
V I+LVG K DL + Q V+++EG+ A ++ + E SAK GY V++
Sbjct: 115 VPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVRE 174
Query: 230 V 230
V
Sbjct: 175 V 175
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 74/146 (50%), Gaps = 4/146 (2%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
GE + K + + +E + N ++ +WDTAGQE+F L Y + A++++D+
Sbjct: 33 GEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDV 92
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323
T+ ++ W D+ ++ I+L GNK D+ D++ + + K N+ + +
Sbjct: 93 TSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDI 149
Query: 324 SAKAGYNVKQLFRRVAAALPGMDSTE 349
SAK+ YN ++ F +A L G + E
Sbjct: 150 SAKSNYNFEKPFLWLARKLIGDPNLE 175
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 89/227 (39%), Gaps = 67/227 (29%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G P +FKLV +G+ G T GKT+ + R + F+ Y
Sbjct: 5 GEPQVQFKLVLVGD---GGT--------------------GKTTFVKRHLTGEFEKKYVP 41
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
T+G++ + ++ +WDTAGQE+F L Y + A++++D+T+ ++
Sbjct: 42 TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 101
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W D LV E ++ I+L
Sbjct: 102 PNWHRD------------LVRVCE------------------------------NIPIVL 119
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
GNK D+ D++ + + K N+ + + SAK+ YN ++ L L
Sbjct: 120 CGNKVDIKDRKVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWL 164
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 90/227 (39%), Gaps = 67/227 (29%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G P +FKLV +G+ G T GKT+ + R + F+ Y A
Sbjct: 5 GEPQVQFKLVLVGD---GGT--------------------GKTTFVKRHLTGEFEKKYVA 41
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
T+G++ + ++ +WDTAGQE+F L Y + A++++D+T+ ++
Sbjct: 42 TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 101
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W D+ VR ++ I+L
Sbjct: 102 PNWHRDL----------------------------------------VRV--CENIPIVL 119
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
GNK D+ D++ + + K N+ + + SAK+ YN ++ L L
Sbjct: 120 CGNKVDIKDRKVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWL 164
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 74/146 (50%), Gaps = 4/146 (2%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
GE + K + + +E + N ++ +WDTAGQE+F L Y + A++++D+
Sbjct: 33 GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDV 92
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323
T+ ++ W D+ ++ I+L GNK D+ D++ + + K N+ + +
Sbjct: 93 TSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDI 149
Query: 324 SAKAGYNVKQLFRRVAAALPGMDSTE 349
SAK+ YN ++ F +A L G + E
Sbjct: 150 SAKSNYNFEKPFLWLARKLIGDPNLE 175
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 90/227 (39%), Gaps = 67/227 (29%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G P +FKLV +G+ G T GKT+ + R + F+ Y A
Sbjct: 5 GEPQVQFKLVLVGD---GGT--------------------GKTTFVKRHLTGEFEKKYVA 41
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
T+G++ + ++ +WDTAGQE+F L Y + A++++D+T+ ++
Sbjct: 42 TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 101
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W D+ VR ++ I+L
Sbjct: 102 PNWHRDL----------------------------------------VRV--CENIPIVL 119
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
GNK D+ D++ + + K N+ + + SAK+ YN ++ L L
Sbjct: 120 CGNKVDIKDRKVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWL 164
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 74/146 (50%), Gaps = 4/146 (2%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
GE + K + + +E + N ++ +WDTAGQE+F L Y + A++++D+
Sbjct: 33 GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDV 92
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323
T+ ++ W D+ ++ I+L GNK D+ D++ + + K N+ + +
Sbjct: 93 TSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDI 149
Query: 324 SAKAGYNVKQLFRRVAAALPGMDSTE 349
SAK+ YN ++ F +A L G + E
Sbjct: 150 SAKSNYNFEKPFLWLARKLIGDPNLE 175
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 90/227 (39%), Gaps = 67/227 (29%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G P +FKLV +G+ G T GKT+ + R + F+ Y A
Sbjct: 5 GEPQVQFKLVLVGD---GGT--------------------GKTTFVKRHLTGEFEKKYVA 41
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
T+G++ + ++ +WDTAGQE+F L Y + A++++D+T+ ++
Sbjct: 42 TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNV 101
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W D+ VR ++ I+L
Sbjct: 102 PNWHRDL----------------------------------------VRV--CENIPIVL 119
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
GNK D+ D++ + + K N+ + + SAK+ YN ++ L L
Sbjct: 120 CGNKVDIKDRKVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWL 164
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 74/146 (50%), Gaps = 4/146 (2%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
GE + K + + +E + N ++ +WDTAGQE+F L Y + A++++D+
Sbjct: 33 GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDV 92
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323
T+ ++ W D+ ++ I+L GNK D+ D++ + + K N+ + +
Sbjct: 93 TSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDI 149
Query: 324 SAKAGYNVKQLFRRVAAALPGMDSTE 349
SAK+ YN ++ F +A L G + E
Sbjct: 150 SAKSNYNFEKPFLWLARKLIGDPNLE 175
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
++ L ++D Q+ R L + V+VY +T+ SF + S+ +R R +D
Sbjct: 47 EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD 106
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
V I+LVGNK+DL R+VS +EG A + FIETSA +NV+ LF V
Sbjct: 107 VPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 158
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 91/228 (39%), Gaps = 73/228 (32%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
+K++ LG VGK++L ++ ++ +A G +TY +I +D
Sbjct: 3 YKVLLLGAPGVGKSALAR--IFGGVEDGPEAEAAG--------------HTYDRSIVVDG 46
Query: 74 LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
++ + D +W+ Q+ R L + V+VY +T+ SF + S+
Sbjct: 47 EEASLMVYD------IWE---QDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQ 97
Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
+R R +D DV I+LVGNK+D
Sbjct: 98 LRRARQTD----------------------------------------DVPIILVGNKSD 117
Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYN--------VKQVRLQ 233
L R+VS +EG A + FIETSA +N V+Q+RL+
Sbjct: 118 LVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
++ L ++D Q+ R L + V+VY +T+ SF + S+ +R R +D
Sbjct: 52 EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD 111
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
V I+LVGNK+DL R+VS +EG A + FIETSA +NV+ LF V
Sbjct: 112 VPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 163
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 91/228 (39%), Gaps = 73/228 (32%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
+K++ LG VGK++L ++ ++ +A G +TY +I +D
Sbjct: 8 YKVLLLGAPGVGKSALAR--IFGGVEDGPEAEAAG--------------HTYDRSIVVDG 51
Query: 74 LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
++ + D +W+ Q+ R L + V+VY +T+ SF + S+
Sbjct: 52 EEASLMVYD------IWE---QDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQ 102
Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
+R R +D DV I+LVGNK+D
Sbjct: 103 LRRARQTD----------------------------------------DVPIILVGNKSD 122
Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYN--------VKQVRLQ 233
L R+VS +EG A + FIETSA +N V+Q+RL+
Sbjct: 123 LVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 170
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 74/146 (50%), Gaps = 4/146 (2%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
GE + K + + +E + N ++ +WDTAGQE+F L Y + A++++D+
Sbjct: 33 GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDV 92
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323
T+ ++ W D+ ++ I+L GNK D+ D++ + + K N+ + +
Sbjct: 93 TSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDI 149
Query: 324 SAKAGYNVKQLFRRVAAALPGMDSTE 349
SAK+ YN ++ F +A L G + E
Sbjct: 150 SAKSNYNFEKPFLWLARKLIGDPNLE 175
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 90/227 (39%), Gaps = 67/227 (29%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G P +FKLV +G+ G T GKT+ + R + F+ Y A
Sbjct: 5 GEPQVQFKLVLVGD---GGT--------------------GKTTFVKRHLTGEFEKKYVA 41
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
T+G++ + ++ +WDTAGQE+F L Y + A++++D+T+ ++
Sbjct: 42 TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 101
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W D LV E ++ I+L
Sbjct: 102 PNWHRD------------LVRVCE------------------------------NIPIVL 119
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
GNK D+ D++ + + K N+ + + SAK+ YN ++ L L
Sbjct: 120 CGNKVDIKDRKVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWL 164
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
++ L ++D Q+ R L + V+VY +T+ SF + S+ +R R +D
Sbjct: 52 EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD 111
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
V I+LVGNK+DL R+VS +EG A + FIETSA +NV+ LF V
Sbjct: 112 VPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 163
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 91/228 (39%), Gaps = 73/228 (32%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
+K++ LG VGK++L ++ ++ +A G +TY +I +D
Sbjct: 8 YKVLLLGAPGVGKSALAR--IFGGVEDGPEAEAAG--------------HTYDRSIVVDG 51
Query: 74 LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
++ + D +W+ Q+ R L + V+VY +T+ SF + S+
Sbjct: 52 EEASLMVYD------IWE---QDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQ 102
Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
+R R +D DV I+LVGNK+D
Sbjct: 103 LRRARQTD----------------------------------------DVPIILVGNKSD 122
Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYN--------VKQVRLQ 233
L R+VS +EG A + FIETSA +N V+Q+RL+
Sbjct: 123 LVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 170
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 249 SYIRDSTVAVVVYDITNANSFHQTSKW-IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE 307
S ++ + V+VY I + SF S+ I RT + V I+LVGNK DL+ R+VS E
Sbjct: 73 SCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVE 132
Query: 308 EGERKAKELNVMFIETSAKAGYNVKQLF 335
EG A + FIETSA +NV +LF
Sbjct: 133 EGRACAVVFDCKFIETSATLQHNVAELF 160
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 88/218 (40%), Gaps = 64/218 (29%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF-DNTYQATIGID 72
+++V LG+ VGKTSL + F GK R +++ ++ Y+ T+ +D
Sbjct: 5 YRVVLLGDPGVGKTSLASLF-------------AGKQE---RDLHEQLGEDVYERTLTVD 48
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
T+ + D +L + QE S ++ + V+VY I + SF S+
Sbjct: 49 GEDTTLVVVDTWEAEKLDKSWSQE-------SCLQGGSAYVIVYSIADRGSFESASELRI 101
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
+R RT + V I+LVGNK
Sbjct: 102 QLR----------------------------------------RTHQADHVPIILVGNKA 121
Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
DL+ R+VS EEG A + FIETSA +NV ++
Sbjct: 122 DLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAEL 159
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 27/150 (18%)
Query: 2 SSSGDFGNP-LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
S +G+ P +R K+V +G+ GKTSL+ F +F +Y T+ R+M +
Sbjct: 22 SMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTV------FERYMVN- 74
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
+ ++ + V L +WDTAGQ+ + L P + D++V ++ +D+T+
Sbjct: 75 -----------------LQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTS 117
Query: 121 ANSFHQT-SKWIDDVRTERGSDVIIMLVGS 149
NSF ++W +V V I++VG
Sbjct: 118 PNSFDNIFNRWYPEV-NHFCKKVPIIVVGC 146
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 15/126 (11%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSD 286
K V L +WDTAGQ+ + L P + D++V ++ +D+T+ NSF ++W +V
Sbjct: 80 KPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKK 138
Query: 287 VIIMLVGNKTDL-SDK-----------RQVSTEEGERKAKELN-VMFIETSAKAGYNVKQ 333
V I++VG KTDL DK V+ G+ A+ + V ++E SA+ NV
Sbjct: 139 VPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHA 198
Query: 334 LFRRVA 339
+F+ A
Sbjct: 199 VFQEAA 204
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 77/157 (49%), Gaps = 10/157 (6%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
GE + K + + +E + N ++ +WDTAGQE+F L Y + A++++D+
Sbjct: 26 GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDV 85
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323
T+ ++ W D+ ++ I+L GNK D+ D++ + + K N+ + +
Sbjct: 86 TSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDI 142
Query: 324 SAKAGYNVKQLFRRVAAALPGMDSTEN------KPPE 354
SAK+ YN ++ F +A L G + E PPE
Sbjct: 143 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPE 179
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 78/187 (41%), Gaps = 44/187 (23%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKT+ + R + F+ Y AT+G++ + ++ +WDTAGQE+F L Y
Sbjct: 15 GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYI 74
Query: 108 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ 167
+ A++++D+T+ ++ W D LV E
Sbjct: 75 QAQCAIIMFDVTSRVTYKNVPNWHRD------------LVRVCE---------------- 106
Query: 168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 227
++ I+L GNK D+ D++ + + K N+ + + SAK+ YN
Sbjct: 107 --------------NIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDISAKSNYNF 150
Query: 228 KQVRLQL 234
++ L L
Sbjct: 151 EKPFLWL 157
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 74/146 (50%), Gaps = 4/146 (2%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
GE + K + + +E + N ++ +WDTAGQE+F L Y + A++++D+
Sbjct: 38 GESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDV 97
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323
T+ ++ W D+ ++ I+L GNK D+ D++ + + K N+ + +
Sbjct: 98 TSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDI 154
Query: 324 SAKAGYNVKQLFRRVAAALPGMDSTE 349
SAK+ YN ++ F +A L G + E
Sbjct: 155 SAKSNYNFEKPFLWLARKLIGDPNLE 180
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 94/234 (40%), Gaps = 68/234 (29%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
M+S+ G P +FKLV +G+ GKT+ + R + G++
Sbjct: 4 MASAAQ-GEPQVQFKLVLVGDGGTGKTTFVKRHL------------TGES---------- 40
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
+ Y AT+G++ + ++ +WDTAGQE+F L Y + A++++D+T+
Sbjct: 41 -EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS 99
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
++ W D+ VR
Sbjct: 100 RVTYKNVPNWHRDL----------------------------------------VRV--C 117
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
++ I+L GNK D+ D++ + + K N+ + + SAK+ YN ++ L L
Sbjct: 118 ENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWL 169
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 74/146 (50%), Gaps = 4/146 (2%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
GE + K + + +E + N ++ +WDTAGQE+F L Y + A++++D+
Sbjct: 33 GEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDV 92
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323
T+ ++ W D+ ++ I+L GNK D+ D++ + + K N+ + +
Sbjct: 93 TSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDI 149
Query: 324 SAKAGYNVKQLFRRVAAALPGMDSTE 349
SAK+ YN ++ F +A L G + E
Sbjct: 150 SAKSNYNFEKPFLWLARKLIGDPNLE 175
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 89/227 (39%), Gaps = 67/227 (29%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G P +FKLV +G+ G T GKT+ + R + F+ Y
Sbjct: 5 GEPQVQFKLVLVGD---GGT--------------------GKTTFVKRHLTGEFEKKYVP 41
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
T+G++ + ++ +WDTAGQE+F L Y + A++++D+T+ ++
Sbjct: 42 TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 101
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W D+ VR ++ I+L
Sbjct: 102 PNWHRDL----------------------------------------VRV--CENIPIVL 119
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
GNK D+ D++ + + K N+ + + SAK+ YN ++ L L
Sbjct: 120 CGNKVDIKDRKVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWL 164
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE + ++ Y+R + V+ I N+ SF + + + + R + DV ++
Sbjct: 71 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMV 130
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL R V T++ AK + FIETSAK V+ F
Sbjct: 131 LVGNKCDLP-TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF 174
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 81/198 (40%), Gaps = 42/198 (21%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y TI D K + ++ T L + DTAGQE + ++ Y+R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N+ SF + + + ++ + SD
Sbjct: 93 GEGFLCVFAINNSKSFADINLYREQIKRVKDSD--------------------------- 125
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
DV ++LVGNK DL R V T++ AK + FIETSAK V+
Sbjct: 126 -------------DVPMVLVGNKCDLP-TRTVDTKQAHELAKSYGIPFIETSAKTRQGVE 171
Query: 229 QVRLQLWDTAGQERFRSL 246
L Q R + L
Sbjct: 172 DAFYTLVREIRQYRMKKL 189
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 89/227 (39%), Gaps = 67/227 (29%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G P +FKLV +G+ G T GKT+ + R + F+ Y A
Sbjct: 5 GEPQVQFKLVLVGD---GGT--------------------GKTTFVKRHLTGEFEKKYVA 41
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
T+G++ + ++ +WDTAGQE+F L Y + A++ +D+T+ ++
Sbjct: 42 TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNV 101
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W D+ VR ++ I+L
Sbjct: 102 PNWHRDL----------------------------------------VRV--CENIPIVL 119
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
GNK D+ D++ + + K N+ + + SAK+ YN ++ L L
Sbjct: 120 CGNKVDIKDRKVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWL 164
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 4/146 (2%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
GE + K + + +E + N ++ +WDTAGQE+F L Y + A++ +D+
Sbjct: 33 GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDV 92
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323
T+ ++ W D+ ++ I+L GNK D+ D++ + + K N+ + +
Sbjct: 93 TSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDI 149
Query: 324 SAKAGYNVKQLFRRVAAALPGMDSTE 349
SAK+ YN ++ F +A L G + E
Sbjct: 150 SAKSNYNFEKPFLWLARKLIGDPNLE 175
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 69/146 (47%), Gaps = 27/146 (18%)
Query: 5 GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT 64
G+F +RK KLV +G+ + GKT L+ F D F Y T+ F+N
Sbjct: 1 GEFMAAIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV--------------FEN- 44
Query: 65 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 124
Y A I +D + V L LWDTAGQE + L P D+ V ++ + I + +S
Sbjct: 45 YVADIEVD---------GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSL 95
Query: 125 HQ-TSKWIDDVRTERGSDVIIMLVGS 149
KW +V+ +V I+LVG+
Sbjct: 96 ENIPEKWTPEVK-HFCPNVPIILVGN 120
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
KQV L LWDTAGQE + L P D+ V ++ + I + +S KW +V+ +
Sbjct: 54 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 112
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
V I+LVGNK DL + + V EEG A + ++E SAK V++
Sbjct: 113 VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE 172
Query: 334 LF 335
+F
Sbjct: 173 VF 174
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 90/227 (39%), Gaps = 67/227 (29%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G P +FKLV +G+ G T GKT+ + R + F+ Y A
Sbjct: 5 GEPQVQFKLVLVGD---GGT--------------------GKTTFVKRHLTGEFEKKYVA 41
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
T+G++ + ++ +WDTAGQE++ L Y + A++++D+T+ ++
Sbjct: 42 TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 101
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W D+ VR ++ I+L
Sbjct: 102 PNWHRDL----------------------------------------VRV--CENIPIVL 119
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
GNK D+ D++ + + K N+ + + SAK+ YN ++ L L
Sbjct: 120 CGNKVDIKDRKVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWL 164
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 74/146 (50%), Gaps = 4/146 (2%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
GE + K + + +E + N ++ +WDTAGQE++ L Y + A++++D+
Sbjct: 33 GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDV 92
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323
T+ ++ W D+ ++ I+L GNK D+ D++ + + K N+ + +
Sbjct: 93 TSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDI 149
Query: 324 SAKAGYNVKQLFRRVAAALPGMDSTE 349
SAK+ YN ++ F +A L G + E
Sbjct: 150 SAKSNYNFEKPFLWLARKLIGDPNLE 175
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE + ++ Y+R + V+ I N SF + + + R + DV ++
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK+DL R V T++ + A+ + FIETSAK V F
Sbjct: 114 LVGNKSDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAF 157
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 87/212 (41%), Gaps = 65/212 (30%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+ ++KLV +G VGK++L + + + F + Y TI +++Y+ +
Sbjct: 2 MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI---------------EDSYRKQVV 46
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
ID T L + DTAGQE + ++ Y+R + V+ I N SF
Sbjct: 47 ID---------GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFE----- 92
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
HH + + K + D DV ++LVGN
Sbjct: 93 ---------------------------DIHH---YREQIKRVKD-----SEDVPMVLVGN 117
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
K+DL R V T++ + A+ + FIETSAK
Sbjct: 118 KSDLP-SRTVDTKQAQDLARSYGIPFIETSAK 148
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE + ++ Y+R + V+ I N SF + + + R + DV ++
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK+DL R V T++ + A+ + FIETSAK V F
Sbjct: 114 LVGNKSDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAF 157
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 42/174 (24%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y TI D K + ++ T L + DTAGQE + ++ Y+R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF + + ++
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIK--------------------------------- 102
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
R + DV ++LVGNK+DL R V T++ + A+ + FIETSAK
Sbjct: 103 -------RVKDSEDVPMVLVGNKSDLP-SRTVDTKQAQDLARSYGIPFIETSAK 148
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE + ++ Y+R + V+ I N SF + + + R + DV ++
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK+DL R V T++ + A+ + FIETSAK V F
Sbjct: 114 LVGNKSDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAF 157
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 42/174 (24%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y TI D K + ++ T L + DTAGQE + ++ Y+R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF + + ++
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIK--------------------------------- 102
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
R + DV ++LVGNK+DL R V T++ + A+ + FIETSAK
Sbjct: 103 -------RVKDSEDVPMVLVGNKSDLP-SRTVDTKQAQDLARSYGIPFIETSAK 148
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 27/143 (18%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G+P + K V +G+ +VGKT L+ + ++F Y T+ FDN Y A
Sbjct: 1 GSP-QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSA 44
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
+ +D + V L LWDTAGQE + L P + V+++ + + + SF
Sbjct: 45 NVMVD---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENV 95
Query: 128 -SKWIDDVRTERGSDVIIMLVGS 149
+KW +VR + I+LVG+
Sbjct: 96 RAKWYPEVR-HHCPNTPIILVGT 117
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ +F SA + K V L LWDTAGQE + L P + V+++ + + + SF
Sbjct: 35 IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFEN 94
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
+KW +VR + I+LVG K DL D + ++ +G AKE+
Sbjct: 95 VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 153
Query: 318 VMFIETSAKAGYNVKQLF 335
V ++E SA +K +F
Sbjct: 154 VKYLECSALTQRGLKTVF 171
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 17/138 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
KQV L LWDTAGQE + L P D+ V ++ + I + +S KW +V+ +
Sbjct: 51 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 109
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
V I+LVGNK DL + V +EEG A ++ ++E SAK V++
Sbjct: 110 VPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVRE 169
Query: 334 LFRRVAAALPGMDSTENK 351
+F A G+ +NK
Sbjct: 170 VFEMATRA--GLQVRKNK 185
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 26/136 (19%)
Query: 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL 74
KLV +G+ + GKT L+ D F Y T+ F+N Y A I +D
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV--------------FEN-YIADIEVD-- 49
Query: 75 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDD 133
+ V L LWDTAGQE + L P D+ V ++ + I + +S KW +
Sbjct: 50 -------GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE 102
Query: 134 VRTERGSDVIIMLVGS 149
V+ +V I+LVG+
Sbjct: 103 VK-HFCPNVPIILVGN 117
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE + ++ Y+R + V+ I N SF + + + R + DV ++
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL R V T++ + A+ + FIETSAK V F
Sbjct: 114 LVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAF 157
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 85/210 (40%), Gaps = 65/210 (30%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
++KLV +G VGK++L + + + F + Y TI +++Y+ + ID
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI---------------EDSYRKQVVID 48
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
T L + DTAGQE + ++ Y+R + V+ I N SF
Sbjct: 49 ---------GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFE------- 92
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
HH + + K + D DV ++LVGNK
Sbjct: 93 -------------------------DIHH---YREQIKRVKD-----SEDVPMVLVGNKC 119
Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAK 222
DL R V T++ + A+ + FIETSAK
Sbjct: 120 DLP-SRTVDTKQAQDLARSYGIPFIETSAK 148
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 26/146 (17%)
Query: 5 GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT 64
G G+ + KLV +G+ + GKT L+ F D F Y T+ F+N
Sbjct: 1 GPLGSAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV--------------FEN- 45
Query: 65 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 124
Y A I +D + V L LWDTAGQE + L P D+ V ++ + I + +S
Sbjct: 46 YVADIEVD---------GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSL 96
Query: 125 HQ-TSKWIDDVRTERGSDVIIMLVGS 149
KW +V+ +V I+LVG+
Sbjct: 97 ENIPEKWTPEVK-HFCPNVPIILVGN 121
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
KQV L LWDTAGQE + L P D+ V ++ + I + +S KW +V+ +
Sbjct: 55 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 113
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
V I+LVGNK DL + + V EEG A + ++E SAK V++
Sbjct: 114 VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE 173
Query: 334 LF 335
+F
Sbjct: 174 VF 175
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 26/140 (18%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++ K V +G+ +VGKT L+ + ++F Y T+ FDN Y A +
Sbjct: 5 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVM 49
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
+D + V L LWDTAGQE + L P + V+++ + + + SF +K
Sbjct: 50 VD---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAK 100
Query: 130 WIDDVRTERGSDVIIMLVGS 149
W +VR + I+LVG+
Sbjct: 101 WYPEVR-HHCPNTPIILVGT 119
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ +F SA + K V L LWDTAGQE + L P + V+++ + + + SF
Sbjct: 37 IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFEN 96
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
+KW +VR + I+LVG K DL D + ++ +G AKE+
Sbjct: 97 VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 155
Query: 318 VMFIETSAKAGYNVKQLF 335
V ++E SA +K +F
Sbjct: 156 VKYLECSALTQRGLKTVF 173
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 26/140 (18%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++ K V +G+ +VGKT L+ + ++F Y T+ FDN Y A +
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVM 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
+D + V L LWDTAGQE + L P + V+++ + + + SF +K
Sbjct: 46 VD---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAK 96
Query: 130 WIDDVRTERGSDVIIMLVGS 149
W +VR + I+LVG+
Sbjct: 97 WYPEVR-HHCPNTPIILVGT 115
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ +F SA + K V L LWDTAGQE + L P + V+++ + + + SF
Sbjct: 33 IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFEN 92
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
+KW +VR + I+LVG K DL D + ++ +G AKE+
Sbjct: 93 VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 151
Query: 318 VMFIETSAKAGYNVKQLF 335
V ++E SA +K +F
Sbjct: 152 VKYLECSALTQRGLKTVF 169
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 26/147 (17%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
G G ++ K V +G+ +VGKT L+ + ++F Y T+ FDN
Sbjct: 1 GGGSGGSMQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV--------------FDN 46
Query: 64 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
Y A + +D + V L LWDTAGQE + L P + V ++ + + + S
Sbjct: 47 -YSANVMVD---------SKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS 96
Query: 124 FHQT-SKWIDDVRTERGSDVIIMLVGS 149
+ +KW +VR S II LVG+
Sbjct: 97 YENVRAKWFPEVRHHCPSTPII-LVGT 122
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ +F SA + K V L LWDTAGQE + L P + V ++ + + + S+
Sbjct: 40 IPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYEN 99
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
+KW +VR S II LVG K DL D + ++ +G AKE++
Sbjct: 100 VRAKWFPEVRHHCPSTPII-LVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDS 158
Query: 318 VMFIETSAKAGYNVKQLF 335
V ++E SA +K +F
Sbjct: 159 VKYLECSALTQRGLKTVF 176
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 2/107 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE F ++ Y+R ++VY +T+ SF ++ + R + ++
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 127
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK-AGYNVKQLFR 336
LV NK DL R+V+ ++G+ A + N+ +IETSAK NV + F
Sbjct: 128 LVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 174
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 41/174 (23%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L +F F + Y TI +L T ++++ L + DTAGQE F ++ Y+R
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSYLKHTE-IDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
++VY +T+ SF H + FHQ
Sbjct: 90 GDGFLIVYSVTDKA-----------------------------------SFEHVDRFHQL 114
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
+R + ++LV NK DL R+V+ ++G+ A + N+ +IETSAK
Sbjct: 115 I-----LRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 163
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 2/107 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE F ++ Y+R ++VY +T+ SF ++ + R + ++
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 127
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK-AGYNVKQLFR 336
LV NK DL R+V+ ++G+ A + N+ +IETSAK NV + F
Sbjct: 128 LVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 174
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 41/174 (23%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L +F F Y TI +L T ++++ L + DTAGQE F ++ Y+R
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIEDSYLKHTE-IDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
++VY +T+ SF H + FHQ
Sbjct: 90 GDGFLIVYSVTDKA-----------------------------------SFEHVDRFHQL 114
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
+R + ++LV NK DL R+V+ ++G+ A + N+ +IETSAK
Sbjct: 115 I-----LRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 163
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE F ++ Y+R ++VY +T+ SF ++ + R + ++
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 127
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK-AGYNVKQLF 335
LV NK DL R+V+ ++G+ A + N+ +IETSAK NV + F
Sbjct: 128 LVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 173
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 92/222 (41%), Gaps = 64/222 (28%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
M++S L +KLV +G+ VGK++L +F F + Y TI
Sbjct: 6 MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTI-------------- 51
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
+++Y+ ID ++ L + DTAGQE F ++ Y+R ++VY +T+
Sbjct: 52 -EDSYRKHTEID---------NQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTD 101
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
SF H + FHQ +R +
Sbjct: 102 KA-----------------------------------SFEHVDRFHQLI-----LRVKDR 121
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
++LV NK DL R+V+ ++G+ A + N+ +IETSAK
Sbjct: 122 ESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 163
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 2/107 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE F ++ Y+R ++VY +T+ SF ++ + R + ++
Sbjct: 63 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 122
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK-AGYNVKQLFR 336
LV NK DL R+V+ ++G+ A + N+ +IETSAK NV + F
Sbjct: 123 LVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 169
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 41/174 (23%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L +F F Y TI +L T ++++ L + DTAGQE F ++ Y+R
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSYLKHTE-IDNQWAILDVLDTAGQEEFSAMREQYMRT 84
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
++VY +T+ SF H + FHQ
Sbjct: 85 GDGFLIVYSVTDKA-----------------------------------SFEHVDRFHQL 109
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
+R + ++LV NK DL R+V+ ++G+ A + N+ +IETSAK
Sbjct: 110 I-----LRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 158
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
KQV L LWDTAGQE + L P D+ V ++ + I + +S KW +V+ +
Sbjct: 71 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 129
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
V I+LVGNK DL + V +EEG A ++ ++E SAK V++
Sbjct: 130 VPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVRE 189
Query: 334 LF 335
+F
Sbjct: 190 VF 191
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 27/140 (19%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+RK KLV +G+ + GKT L+ F D F Y T+ F+N Y A I
Sbjct: 24 IRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV--------------FEN-YIADIE 67
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSK 129
+D + V L LWDTAGQE + L P D+ V ++ + I + +S K
Sbjct: 68 VD---------GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 118
Query: 130 WIDDVRTERGSDVIIMLVGS 149
W +V+ +V I+LVG+
Sbjct: 119 WTPEVK-HFCPNVPIILVGN 137
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 60 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 119
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 120 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 163
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 42/174 (24%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y TI D K + ++ T L + DTAGQE + ++ Y+R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 82 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 114
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
DV ++LVGNK DL+ R V + + + A+ + +IETSAK
Sbjct: 115 -------------DVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAK 154
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTEN 350
LVGNK DL+ R V + + + A+ + +IETSAK V+ F + + +
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKL 171
Query: 351 KPPED 355
PP++
Sbjct: 172 NPPDE 176
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 42/201 (20%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y TI D K + ++ T L + DTAGQE + ++ Y+R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 107
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
DV ++LVGNK DL+ R V + + + A+ + +IETSAK V+
Sbjct: 108 -------------DVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVE 153
Query: 229 QVRLQLWDTAGQERFRSLIPS 249
L Q + R L P
Sbjct: 154 DAFYTLVREIRQHKLRKLNPP 174
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 59 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 118
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 119 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 162
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 42/174 (24%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y +I D K + ++ T L + DTAGQE + ++ Y+R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 81 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 113
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
DV ++LVGNK DL+ R V + + + A+ + +IETSAK
Sbjct: 114 -------------DVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAK 153
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
KQV L LWDTAGQE + L P D+ V ++ + I + +S KW +V+ +
Sbjct: 52 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 110
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
V I+LVGNK DL + + V EEG A + ++E SAK V++
Sbjct: 111 VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE 170
Query: 334 LF 335
+F
Sbjct: 171 VF 172
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 27/140 (19%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+RK KLV +G+ + GKT L+ F D F Y T+ F+N Y A I
Sbjct: 5 IRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV--------------FEN-YVADIE 48
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSK 129
+D + V L LWDTAGQE + L P D+ V ++ + I + +S K
Sbjct: 49 VD---------GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 99
Query: 130 WIDDVRTERGSDVIIMLVGS 149
W +V+ +V I+LVG+
Sbjct: 100 WTPEVK-HFCPNVPIILVGN 118
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
KQV L LWDTAGQE + L P D+ V ++ + I + +S KW +V+ +
Sbjct: 49 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 107
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
V I+LVGNK DL + + V EEG A + ++E SAK V++
Sbjct: 108 VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE 167
Query: 334 LF 335
+F
Sbjct: 168 VF 169
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 27/140 (19%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+RK KLV +G+ + GKT L+ D F Y T+ F+N Y A I
Sbjct: 2 IRK-KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV--------------FEN-YVADIE 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSK 129
+D + V L LWDTAGQE + L P D+ V ++ + I + +S K
Sbjct: 46 VD---------GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 96
Query: 130 WIDDVRTERGSDVIIMLVGS 149
W +V+ +V I+LVG+
Sbjct: 97 WTPEVK-HFCPNVPIILVGN 115
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
KQV L LWDTAGQE + L P D+ V ++ + I + +S KW +V+ +
Sbjct: 53 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 111
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
V I+LVGNK DL + + V EEG A + ++E SAK V++
Sbjct: 112 VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE 171
Query: 334 LF 335
+F
Sbjct: 172 VF 173
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 27/140 (19%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+RK KLV +G+ + GKT L+ F D F Y T+ F+N Y A I
Sbjct: 6 IRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV--------------FEN-YVADIE 49
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSK 129
+D + V L LWDTAGQE + L P D+ V ++ + I + +S K
Sbjct: 50 VD---------GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 100
Query: 130 WIDDVRTERGSDVIIMLVGS 149
W +V+ +V I+LVG+
Sbjct: 101 WTPEVK-HFCPNVPIILVGN 119
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
KQV L LWDTAGQE + L P D+ V ++ + I + +S KW +V+ +
Sbjct: 51 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 109
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
V I+LVGNK DL + + V EEG A + ++E SAK V++
Sbjct: 110 VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE 169
Query: 334 LF 335
+F
Sbjct: 170 VF 171
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 27/140 (19%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+RK KLV +G+ + GKT L+ D F Y T+ F+N Y A I
Sbjct: 4 IRK-KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV--------------FEN-YVADIE 47
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSK 129
+D + V L LWDTAGQE + L P D+ V ++ + I + +S K
Sbjct: 48 VD---------GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 98
Query: 130 WIDDVRTERGSDVIIMLVGS 149
W +V+ +V I+LVG+
Sbjct: 99 WTPEVK-HFCPNVPIILVGN 117
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 58 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 118 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 161
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 42/174 (24%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y TI D K + ++ T L + DTAGQE + ++ Y+R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 112
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
DV ++LVGNK DL+ R V + + + A+ + +IETSAK
Sbjct: 113 -------------DVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAK 152
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 58 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 118 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 161
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 42/174 (24%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y TI D K + ++ T L + DTAGQE + ++ Y+R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 112
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
DV ++LVGNK DL+ R V + + + A+ + +IETSAK
Sbjct: 113 -------------DVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAK 152
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
KQV L LWDTAGQE + L P D+ V ++ + I + +S KW +V+ +
Sbjct: 52 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 110
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
V I+LVGNK DL + + V EEG A + ++E SAK V++
Sbjct: 111 VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE 170
Query: 334 LF 335
+F
Sbjct: 171 VF 172
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 27/140 (19%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+RK KLV +G+ + GKT L+ F D F Y T+ F+N Y A I
Sbjct: 5 IRK-KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTV--------------FEN-YVADIE 48
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSK 129
+D + V L LWDTAGQE + L P D+ V ++ + I + +S K
Sbjct: 49 VD---------GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 99
Query: 130 WIDDVRTERGSDVIIMLVGS 149
W +V+ +V I+LVG+
Sbjct: 100 WTPEVK-HFCPNVPIILVGN 118
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 26/137 (18%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
K V +G+ +VGKT L+ + ++F Y T+ FDN Y A + +D
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVMVD- 47
Query: 74 LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWID 132
+ V L LWDTAGQE + L P + V+++ + + + SF +KW
Sbjct: 48 --------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYP 99
Query: 133 DVRTERGSDVIIMLVGS 149
+VR + I+LVG+
Sbjct: 100 EVR-HHCPNTPIILVGT 115
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ +F SA + K V L LWDTAGQE + L P + V+++ + + + SF
Sbjct: 33 IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFEN 92
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
+KW +VR + I+LVG K DL D + ++ +G AKE+
Sbjct: 93 VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 151
Query: 318 VMFIETSAKAGYNVKQLF 335
V ++E SA +K +F
Sbjct: 152 VKYLECSALTQRGLKTVF 169
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
KQV L LWDTAGQE + L P D+ V ++ + I + +S KW +V+ +
Sbjct: 49 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 107
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
V I+LVGNK DL + + V EEG A + ++E SAK V++
Sbjct: 108 VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE 167
Query: 334 LF 335
+F
Sbjct: 168 VF 169
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 27/140 (19%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+RK KLV +G+ + GKT L+ D F Y T+ F+N Y A I
Sbjct: 2 IRK-KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV--------------FEN-YVADIE 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSK 129
+D + V L LWDTAGQE + L P D+ V ++ + I + +S K
Sbjct: 46 VD---------GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 96
Query: 130 WIDDVRTERGSDVIIMLVGS 149
W +V+ +V I+LVG+
Sbjct: 97 WTPEVK-HFCPNVPIILVGN 115
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 4/146 (2%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
GE + K + + +E + N ++ +WDTAG E+F L Y + A++++D+
Sbjct: 29 GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDV 88
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323
T+ ++ W D+ ++ I+L GNK D+ D++ + + K N+ + +
Sbjct: 89 TSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDI 145
Query: 324 SAKAGYNVKQLFRRVAAALPGMDSTE 349
SAK+ YN ++ F +A L G + E
Sbjct: 146 SAKSNYNFEKPFLWLARKLIGDPNLE 171
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 87/227 (38%), Gaps = 67/227 (29%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G P +FKLV +G+ GKT+ + R + F+ Y A
Sbjct: 1 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKK-----------------------YVA 37
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
T+G++ + ++ +WDTAG E+F L Y + A++++D+T+ ++
Sbjct: 38 TLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 97
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W D LV E ++ I+L
Sbjct: 98 PNWHRD------------LVRVCE------------------------------NIPIVL 115
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
GNK D+ D++ + + K N+ + + SAK+ YN ++ L L
Sbjct: 116 CGNKVDIKDRKVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWL 160
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 42/174 (24%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y TI D K + ++ T L + DTAGQE + ++ Y+R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 107
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
DV ++LVGNK DL+ R V + + + A+ + +IETSAK
Sbjct: 108 -------------DVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 42/174 (24%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y TI D K + ++ T L + DTAGQE + ++ Y+R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 107
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
DV ++LVGNK DL+ R V + + + A+ + +IETSAK
Sbjct: 108 -------------DVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK+DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 113 LVGNKSDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 42/174 (24%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y TI D K + ++ T L + DTAGQE + ++ Y+R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 107
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
DV ++LVGNK+DL+ R V + + + A+ + +IETSAK
Sbjct: 108 -------------DVPMVLVGNKSDLA-ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 42/174 (24%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K +L + + + F + Y TI D K + ++ T L + DTAGQE + ++ Y+R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 107
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
DV ++LVGNK DL+ R V + + + A+ + +IETSAK
Sbjct: 108 -------------DVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 87/212 (41%), Gaps = 65/212 (30%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+ ++KLV +G VGK++L + + + F + Y TI +++Y+ +
Sbjct: 1 MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTI---------------EDSYRKQVV 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
ID T L + DTAGQE + ++ Y+R + V+ I N SF ++
Sbjct: 46 ID---------GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQY 96
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
+ ++ + SD DV ++LVGN
Sbjct: 97 REQIKRVKDSD----------------------------------------DVPMVLVGN 116
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
K DL+ R V + + + A+ + +IETSAK
Sbjct: 117 KCDLA-ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 42/174 (24%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y TI D K + ++ T L + DTAGQE + ++ Y+R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 107
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
DV ++LVGNK DL+ R V + + + A+ + +IETSAK
Sbjct: 108 -------------DVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 42/174 (24%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y TI D K + ++ T L + DTAGQE + ++ Y+R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 107
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
DV ++LVGNK DL+ R V + + + A+ + +IETSAK
Sbjct: 108 -------------DVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 98/239 (41%), Gaps = 82/239 (34%)
Query: 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
R K V +G+ +VGKT ++ + ++F Y T+ FDN
Sbjct: 5 RFIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTV--------------FDN-------- 42
Query: 72 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP-SYIRDSTVAVVVYDITNANSFHQTSKW 130
S + ++ TV L LWDTAGQE + L P SY
Sbjct: 43 --FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSY------------------------- 75
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
RG+DV ++ F+ +S + H+ KW+ +++ + I+LVG
Sbjct: 76 -------RGADVFLL-------AFSLISKASYENIHK--KWLPELK-HYAPGIPIVLVGT 118
Query: 191 KTDLSDKRQ----------VSTEEGERKAKELN-VMFIETSAKAGYNVKQVRLQLWDTA 238
K DL D +Q ++T +GE K + V ++E S+K NVK V +DTA
Sbjct: 119 KLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAV----FDTA 173
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 13/118 (11%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVI 288
V L LWDTAGQE + L P R + V ++ + + + S+ KW+ +++ +
Sbjct: 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELK-HYAPGIP 112
Query: 289 IMLVGNKTDLSDKRQ----------VSTEEGERKAKELN-VMFIETSAKAGYNVKQLF 335
I+LVG K DL D +Q ++T +GE K + V ++E S+K NVK +F
Sbjct: 113 IVLVGTKLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
KQV L LWDTAGQE + L P D+ V ++ + I + +S KW +V+ +
Sbjct: 71 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFXPN 129
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
V I+LVGNK DL + V +EEG A ++ ++E SAK V++
Sbjct: 130 VPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVRE 189
Query: 334 LF 335
+F
Sbjct: 190 VF 191
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 27/140 (19%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+RK KLV +G+ + GKT L+ F D F Y T+ F+N Y A I
Sbjct: 24 IRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV--------------FEN-YIADIE 67
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSK 129
+D + V L LWDTAGQE + L P D+ V ++ + I + +S K
Sbjct: 68 VD---------GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 118
Query: 130 WIDDVRTERGSDVIIMLVGS 149
W +V+ +V I+LVG+
Sbjct: 119 WTPEVK-HFXPNVPIILVGN 137
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK+DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 113 LVGNKSDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 76/180 (42%), Gaps = 42/180 (23%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + TI D K + ++ T L + DTAGQE + ++ Y+R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 107
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
DV ++LVGNK+DL+ R V + + + A+ + +IETSAK V+
Sbjct: 108 -------------DVPMVLVGNKSDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVE 153
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 87/212 (41%), Gaps = 65/212 (30%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+ ++KLV +G VGK++L + + + F + Y TI +++Y+ +
Sbjct: 1 MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI---------------EDSYRKQVV 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
ID T L + DTAGQE + ++ Y+R + V+ I N SF ++
Sbjct: 46 ID---------GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQY 96
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
+ ++ + SD DV ++LVGN
Sbjct: 97 REQIKRVKDSD----------------------------------------DVPMVLVGN 116
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
K DL+ R V + + + A+ + +IETSAK
Sbjct: 117 KCDLA-ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 42/174 (24%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y TI + K + ++ T L + DTAGQE + ++ Y+R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 107
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
DV ++LVGNK DL+ R V + + + A+ + +IETSAK
Sbjct: 108 -------------DVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
KQV L LWDTAGQE + L P D+ V ++ + I + +S KW +V+ +
Sbjct: 53 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 111
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
V I+LVGNK DL + + V EEG A + ++E SAK V++
Sbjct: 112 VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE 171
Query: 334 LF 335
+F
Sbjct: 172 VF 173
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 26/136 (19%)
Query: 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL 74
KLV +G+ + GKT L+ F D F Y T+ F+N Y A I +D
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV--------------FEN-YVADIEVD-- 51
Query: 75 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDD 133
+ V L LWDTAGQE + L P D+ V ++ + I + +S KW +
Sbjct: 52 -------GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE 104
Query: 134 VRTERGSDVIIMLVGS 149
V+ +V I+LVG+
Sbjct: 105 VK-HFCPNVPIILVGN 119
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 76/180 (42%), Gaps = 42/180 (23%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + + TI D K + ++ T L + DTAGQE + ++ Y+R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 107
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
DV ++LVGNK DL+ R V + + + A+ + +IETSAK V+
Sbjct: 108 -------------DVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVE 153
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 88/212 (41%), Gaps = 65/212 (30%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+ ++KLV +G + VGK++L + + + F + Y TI +++Y+ +
Sbjct: 1 MTEYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTI---------------EDSYRKQVV 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
ID T L + DTAGQE + ++ Y+R + V+ I N SF ++
Sbjct: 46 ID---------GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQY 96
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
+ ++ + SD DV ++LVGN
Sbjct: 97 REQIKRVKDSD----------------------------------------DVPMVLVGN 116
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
K DL+ R V + + + A+ + +IETSAK
Sbjct: 117 KCDLA-ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 42/174 (24%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y +I D K + ++ T L + DTAGQE + ++ Y+R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 107
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
DV ++LVGNK DL+ R V + + + A+ + +IETSAK
Sbjct: 108 -------------DVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 89/227 (39%), Gaps = 67/227 (29%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G P +FKLV +G+ G T GKT+ + R + F+ Y A
Sbjct: 5 GEPQVQFKLVLVGD---GGT--------------------GKTTFVKRHLTGEFEKKYVA 41
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
T+G++ + ++ +WDTAG E+F L Y + A++++D+T+ ++
Sbjct: 42 TLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 101
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W D+ VR ++ I+L
Sbjct: 102 PNWHRDL----------------------------------------VRV--CENIPIVL 119
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
GNK D+ D++ + + K N+ + + SAK+ YN ++ L L
Sbjct: 120 CGNKVDIKDRKVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWL 164
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 10/157 (6%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
GE + K + + +E + N ++ +WDTAG E+F L Y + A++++D+
Sbjct: 33 GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDV 92
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323
T+ ++ W D+ ++ I+L GNK D+ D++ + + K N+ + +
Sbjct: 93 TSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDI 149
Query: 324 SAKAGYNVKQLFRRVAAALPGMDSTEN------KPPE 354
SAK+ YN ++ F +A L G + E PPE
Sbjct: 150 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPE 186
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
KQV L LWDTAGQE + L P D+ V ++ + I + +S KW +V+ +
Sbjct: 51 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 109
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
V I+LVGNK DL + + V EEG A + ++E SAK V++
Sbjct: 110 VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE 169
Query: 334 LF 335
+F
Sbjct: 170 VF 171
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 26/136 (19%)
Query: 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL 74
KLV +G+ + GKT L+ D F Y T+ F+N Y A I +D
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV--------------FEN-YVADIEVD-- 49
Query: 75 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDD 133
+ V L LWDTAGQE + L P D+ V ++ + I + +S KW +
Sbjct: 50 -------GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE 102
Query: 134 VRTERGSDVIIMLVGS 149
V+ +V I+LVG+
Sbjct: 103 VK-HFCPNVPIILVGN 117
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 42/174 (24%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y TI D K + ++ L + DTAGQE + ++ Y+R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 107
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
DV ++LVGNK DL+ R V + + + A+ + +IETSAK
Sbjct: 108 -------------DVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 42/174 (24%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F Y TI D K + ++ T L + DTAGQE + ++ Y+R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 107
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
DV ++LVGNK DL+ R V + + + A+ + +IETSAK
Sbjct: 108 -------------DVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
KQV L LWDTAGQE + L P D+ V ++ + I + +S KW +V+ +
Sbjct: 51 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 109
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
V I+LVGNK DL + + V EEG A + ++E SAK V++
Sbjct: 110 VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE 169
Query: 334 LF 335
+F
Sbjct: 170 VF 171
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 27/140 (19%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+RK KLV +G+ + GKT L+ D F Y T+ F+N Y A I
Sbjct: 4 IRK-KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV--------------FEN-YVADIE 47
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSK 129
+D + V L LWDTAGQE + L P D+ V ++ + I + +S K
Sbjct: 48 VD---------GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 98
Query: 130 WIDDVRTERGSDVIIMLVGS 149
W +V+ +V I+LVG+
Sbjct: 99 WTPEVK-HFCPNVPIILVGN 117
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
KQV L LWDTAGQE + L P D+ V ++ + I + +S KW +V+ +
Sbjct: 53 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 111
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
V I+LVGNK DL + + V EEG A + ++E SAK V++
Sbjct: 112 VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE 171
Query: 334 LF 335
+F
Sbjct: 172 VF 173
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 27/140 (19%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+RK KLV +G+ + GKT L+ F D F Y T+ F+N Y A I
Sbjct: 6 IRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV--------------FEN-YVADIE 49
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSK 129
+D + V L LWDTAGQE + L P D+ V ++ + I + +S K
Sbjct: 50 VD---------GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 100
Query: 130 WIDDVRTERGSDVIIMLVGS 149
W +V+ +V I+LVG+
Sbjct: 101 WTPEVK-HFCPNVPIILVGN 119
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 42/174 (24%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y TI D K + ++ T L + DTAGQE + ++ Y+R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 107
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
DV ++LVGNK DL+ R V + + + A+ + +IETSAK
Sbjct: 108 -------------DVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
KQV L LWDTAGQE + L P D+ V ++ + I + +S KW +V+ +
Sbjct: 51 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 109
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
V I+LVGNK DL + + V EEG A + ++E SAK V++
Sbjct: 110 VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE 169
Query: 334 LF 335
+F
Sbjct: 170 VF 171
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 26/136 (19%)
Query: 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL 74
KLV +G+ + GKT L+ F D F Y T+ F+N Y A I +D
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV--------------FEN-YVADIEVD-- 49
Query: 75 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDD 133
+ V L LWDTAGQE + L P D+ V ++ + I + +S KW +
Sbjct: 50 -------GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE 102
Query: 134 VRTERGSDVIIMLVGS 149
V+ +V I+LVG+
Sbjct: 103 VK-HFCPNVPIILVGN 117
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 27/146 (18%)
Query: 5 GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT 64
G G+P+RK KLV +G+ + GKT L+ D F Y T+ F+N
Sbjct: 1 GAMGSPIRK-KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV--------------FEN- 44
Query: 65 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 124
Y A I +D + V L LWDTAG E + L P D+ V ++ + I + +S
Sbjct: 45 YVADIEVD---------GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSL 95
Query: 125 HQ-TSKWIDDVRTERGSDVIIMLVGS 149
KW +V+ +V I+LVG+
Sbjct: 96 ENIPEKWTPEVK-HFCPNVPIILVGN 120
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
KQV L LWDTAG E + L P D+ V ++ + I + +S KW +V+ +
Sbjct: 54 KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 112
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
V I+LVGNK DL + + V EEG A + ++E SAK V++
Sbjct: 113 VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE 172
Query: 334 LF 335
+F
Sbjct: 173 VF 174
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 11/134 (8%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ +F SA + + V L LWDTAGQE + L P R + + V+ + + + S+
Sbjct: 39 IPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYEN 98
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ--------VSTEEGERKAKELN-VMFI 321
KW+ ++R +V I+LVG K DL D + +++ +GE K++ +I
Sbjct: 99 VLKKWMPELR-RFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYI 157
Query: 322 ETSAKAGYNVKQLF 335
E S+K NVK +F
Sbjct: 158 ECSSKTQQNVKAVF 171
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 96/228 (42%), Gaps = 66/228 (28%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
K V +G+ +VGKT ++ + + F Y T+ FDN + A + +D
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV--------------FDN-FSANVAVD- 53
Query: 74 LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWID 132
+ V L LWDTAGQE + L P R + + V+ + + + S+ KW+
Sbjct: 54 --------GQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMP 105
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
++R +V I+LVG T L D+R ++G
Sbjct: 106 ELR-RFAPNVPIVLVG------TKL----------------DLRDDKGY----------- 131
Query: 193 DLSDKRQVSTE-EGERKAKELN-VMFIETSAKAGYNVKQVRLQLWDTA 238
L+D V T +GE K++ +IE S+K NVK V +DTA
Sbjct: 132 -LADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAV----FDTA 174
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 42/198 (21%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y TI D K + ++ T L + DTAGQE + ++ Y+R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 107
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
DV ++LVGNK DL+ R V + + + A+ + +IETSAK V+
Sbjct: 108 -------------DVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVE 153
Query: 229 QVRLQLWDTAGQERFRSL 246
L Q + R L
Sbjct: 154 DAFYTLVREIRQHKLRKL 171
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 42/198 (21%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y TI D K + ++ T L + DTAGQE + ++ Y+R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 107
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
DV ++LVGNK DL+ R V + + + A+ + +IETSAK V+
Sbjct: 108 -------------DVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVE 153
Query: 229 QVRLQLWDTAGQERFRSL 246
L Q + R L
Sbjct: 154 DAFYTLVREIRQHKLRKL 171
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 113 LVGNKCDLA-GRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 87/212 (41%), Gaps = 65/212 (30%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+ ++KLV +G VGK++L + + + F + Y TI +++Y+ +
Sbjct: 1 MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTI---------------EDSYRKQVV 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
ID T L + DTAGQE + ++ Y+R + V+ I N SF ++
Sbjct: 46 ID---------GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQY 96
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
+ ++ + SD DV ++LVGN
Sbjct: 97 REQIKRVKDSD----------------------------------------DVPMVLVGN 116
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
K DL+ R V + + + A+ + +IETSAK
Sbjct: 117 KCDLA-GRTVESRQAQDLARSYGIPYIETSAK 147
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 4/146 (2%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
GE + K + + +E + N ++ +WDTAG E+F L Y + A++++D+
Sbjct: 35 GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDV 94
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323
T+ ++ W D+ ++ I+L GNK D+ D++ + + K N+ + +
Sbjct: 95 TSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDI 151
Query: 324 SAKAGYNVKQLFRRVAAALPGMDSTE 349
SAK+ YN ++ F +A L G + E
Sbjct: 152 SAKSNYNFEKPFLWLARKLIGDPNLE 177
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 87/227 (38%), Gaps = 67/227 (29%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G P +FKLV +G+ GKT+ + R + F+ Y A
Sbjct: 7 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKK-----------------------YVA 43
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
T+G++ + ++ +WDTAG E+F L Y + A++++D+T+ ++
Sbjct: 44 TLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 103
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W D LV E ++ I+L
Sbjct: 104 PNWHRD------------LVRVCE------------------------------NIPIVL 121
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
GNK D+ D++ + + K N+ + + SAK+ YN ++ L L
Sbjct: 122 CGNKVDIKDRKVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWL 166
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAG E + ++ Y+R + V+ I N SF + + + R + DV ++
Sbjct: 71 LDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 130
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL R V T++ + A+ + FIETSAK V F
Sbjct: 131 LVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAF 174
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 42/174 (24%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y TI D K + ++ T L + DTAG E + ++ Y+R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF + + ++
Sbjct: 93 GEGFLCVFAINNTKSFEDIHHYREQIK--------------------------------- 119
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
R + DV ++LVGNK DL R V T++ + A+ + FIETSAK
Sbjct: 120 -------RVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAK 165
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 26/144 (18%)
Query: 7 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQ 66
F ++ K V +G+ +VGKT L+ + ++F Y T+ FDN Y
Sbjct: 16 FQGTMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YS 60
Query: 67 ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 126
A + +D + V L LWDTAGQE + L P + V ++ + + + SF
Sbjct: 61 ANVMVD---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 111
Query: 127 T-SKWIDDVRTERGSDVIIMLVGS 149
+KW +VR + I+LVG+
Sbjct: 112 VRAKWYPEVR-HHCPNTPIILVGT 134
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ +F SA + K V L LWDTAGQE + L P + V ++ + + + SF
Sbjct: 52 IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 111
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
+KW +VR + I+LVG K DL D + ++ +G AKE+
Sbjct: 112 VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 170
Query: 318 VMFIETSAKAGYNVKQLF 335
V ++E SA +K +F
Sbjct: 171 VKYLECSALTQRGLKTVF 188
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 26/140 (18%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++ K V +G+ +VGKT L+ + ++F Y T+ FDN Y A +
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVM 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
+D + V L LWDTAGQE + L P + V ++ + + + SF +K
Sbjct: 46 VD---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 96
Query: 130 WIDDVRTERGSDVIIMLVGS 149
W +VR + I+LVG+
Sbjct: 97 WYPEVR-HHCPNTPIILVGT 115
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ +F SA + K V L LWDTAGQE + L P + V ++ + + + SF
Sbjct: 33 IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
+KW +VR + I+LVG K DL D + ++ +G AKE+
Sbjct: 93 VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 151
Query: 318 VMFIETSAKAGYNVKQLF 335
V ++E SA +K +F
Sbjct: 152 VKYLECSALTQRGLKTVF 169
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 26/140 (18%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++ K V +G+ +VGKT L+ + ++F Y T+ FDN Y A +
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVM 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
+D + V L LWDTAGQE + L P + V ++ + + + SF +K
Sbjct: 46 VD---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 96
Query: 130 WIDDVRTERGSDVIIMLVGS 149
W +VR + I+LVG+
Sbjct: 97 WYPEVR-HHCPNTPIILVGT 115
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ +F SA + K V L LWDTAGQE + L P + V ++ + + + SF
Sbjct: 33 IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
+KW +VR + I+LVG K DL D + ++ +G AKE+
Sbjct: 93 VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 151
Query: 318 VMFIETSAKAGYNVKQLF 335
V ++E SA +K +F
Sbjct: 152 VKYLECSALTQRGLKTVF 169
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGN+ DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 113 LVGNRCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 76/180 (42%), Gaps = 42/180 (23%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y TI D K + ++ T L + DTAGQE + ++ Y+R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 107
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
DV ++LVGN+ DL+ R V + + + A+ + +IETSAK V+
Sbjct: 108 -------------DVPMVLVGNRCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVE 153
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 26/140 (18%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++ K V +G+ +VGKT L+ + ++F Y T+ FDN Y A +
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVM 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
+D + V L LWDTAGQE + L P + V ++ + + + SF +K
Sbjct: 46 VD---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 96
Query: 130 WIDDVRTERGSDVIIMLVGS 149
W +VR + I+LVG+
Sbjct: 97 WYPEVR-HHCPNTPIILVGT 115
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ +F SA + K V L LWDTAGQE + L P + V ++ + + + SF
Sbjct: 33 IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
+KW +VR + I+LVG K DL D + ++ +G AKE+
Sbjct: 93 VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 151
Query: 318 VMFIETSAKAGYNVKQLF 335
V ++E SA +K +F
Sbjct: 152 VKYLECSALTQRGLKTVF 169
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 26/140 (18%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++ K V +G+ +VGKT L+ + ++F Y T+ FDN Y A +
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVM 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
+D + V L LWDTAGQE + L P + V ++ + + + SF +K
Sbjct: 46 VD---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 96
Query: 130 WIDDVRTERGSDVIIMLVGS 149
W +VR + I+LVG+
Sbjct: 97 WYPEVR-HHCPNTPIILVGT 115
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ +F SA + K V L LWDTAGQE + L P + V ++ + + + SF
Sbjct: 33 IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
+KW +VR + I+LVG K DL D + ++ +G AKE+
Sbjct: 93 VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 151
Query: 318 VMFIETSAKAGYNVKQLF 335
V ++E SA +K +F
Sbjct: 152 VKYLECSALTQRGLKTVF 169
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 26/140 (18%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++ K V +G+ +VGKT L+ + ++F Y T+ FDN Y A +
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVM 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
+D + V L LWDTAGQE + L P + V ++ + + + SF +K
Sbjct: 46 VD---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 96
Query: 130 WIDDVRTERGSDVIIMLVGS 149
W +VR + I+LVG+
Sbjct: 97 WYPEVR-HHCPNTPIILVGT 115
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ +F SA + K V L LWDTAGQE + L P + V ++ + + + SF
Sbjct: 33 IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
+KW +VR + I+LVG K DL D + ++ +G AKE+
Sbjct: 93 VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 151
Query: 318 VMFIETSAKAGYNVKQLF 335
V ++E SA +K +F
Sbjct: 152 VKYLECSALTQRGLKTVF 169
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 28/149 (18%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
SSG G ++ K V +G+ +VGK L+ + ++F Y T+ F
Sbjct: 1 GSSGSSG--MQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV--------------F 44
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DN Y A + +D + V L LWDTAGQE + L P + V ++ + + +
Sbjct: 45 DN-YSANVMVD---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP 94
Query: 122 NSFHQT-SKWIDDVRTERGSDVIIMLVGS 149
SF +KW +VR + I+LVG+
Sbjct: 95 ASFENVRAKWYPEVR-HHCPNTPIILVGT 122
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ +F SA + K V L LWDTAGQE + L P + V ++ + + + SF
Sbjct: 40 IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 99
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
+KW +VR + I+LVG K DL D + ++ +G AKE+
Sbjct: 100 VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 158
Query: 318 VMFIETSAKAGYNVKQLF 335
V ++E SA +K +F
Sbjct: 159 VKYLECSALTQRGLKTVF 176
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 26/140 (18%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++ K V +G+ +VGKT L+ + ++F Y T+ FDN Y A +
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVM 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
+D + V L LWDTAGQE + L P + V ++ + + + S+ +K
Sbjct: 46 VD---------SKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAK 96
Query: 130 WIDDVRTERGSDVIIMLVGS 149
W +VR S II LVG+
Sbjct: 97 WFPEVRHHCPSTPII-LVGT 115
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ +F SA + K V L LWDTAGQE + L P + V ++ + + + S+
Sbjct: 33 IPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYEN 92
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
+KW +VR S II LVG K DL D + ++ +G AKE++
Sbjct: 93 VRAKWFPEVRHHCPSTPII-LVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDS 151
Query: 318 VMFIETSAKAGYNVKQLF 335
V ++E SA +K +F
Sbjct: 152 VKYLECSALTQRGLKTVF 169
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DT GQE + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 42/174 (24%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y TI D K + ++ T L + DT GQE + ++ Y+R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 107
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
DV ++LVGNK DL+ R V + + + A+ + +IETSAK
Sbjct: 108 -------------DVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 26/137 (18%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
K V +G+ +VGKT L+ + ++F Y T+ FDN Y A + +D
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVMVD- 199
Query: 74 LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWID 132
+ V L LWDTAG E + L P + V ++ + + + SFH +KW
Sbjct: 200 --------GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYP 251
Query: 133 DVRTERGSDVIIMLVGS 149
+VR + I+LVG+
Sbjct: 252 EVR-HHCPNTPIILVGT 267
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ +F SA + K V L LWDTAG E + L P + V ++ + + + SFH
Sbjct: 185 IPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHH 244
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
+KW +VR + I+LVG K DL D + ++ +G AKE+
Sbjct: 245 VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 303
Query: 318 VMFIETSAKAGYNVKQLF 335
V ++E SA +K +F
Sbjct: 304 VKYLECSALTQRGLKTVF 321
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 94/234 (40%), Gaps = 61/234 (26%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++ K V +G+ +VGKT L+ + ++F Y T+ FDN Y A +
Sbjct: 3 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVM 47
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
+D + V L LWDTAGQE + L P + Y T ++ +
Sbjct: 48 VD---------GKPVNLGLWDTAGQEDYDRLRP----------LSYPQTVGETYGK---- 84
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT-SKWIDDVRTERGSDVIIMLVG 189
D+ T RG D I + S SF +KW +VR + I+LVG
Sbjct: 85 --DI-TSRGKDKPIA-----DVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVG 135
Query: 190 NKTDLSDKR------------QVSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
K DL D + ++ +G AKE+ V ++E SA +K V
Sbjct: 136 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 189
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 34/157 (21%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP---------SYIRDST------- 255
+ +F SA + K V L LWDTAGQE + L P +Y +D T
Sbjct: 35 IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVGETYGKDITSRGKDKP 94
Query: 256 ---VAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR--------- 302
V ++ + + + SF +KW +VR + I+LVG K DL D +
Sbjct: 95 IADVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEK 153
Query: 303 ---QVSTEEGERKAKELN-VMFIETSAKAGYNVKQLF 335
++ +G AKE+ V ++E SA +K +F
Sbjct: 154 KLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 190
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 26/137 (18%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
K V +G+ +VGKT L+ + ++F Y T+ FDN Y A + +D
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVMVD- 199
Query: 74 LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWID 132
+ V L LWDTAG E + L P + V ++ + + + SFH +KW
Sbjct: 200 --------GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYP 251
Query: 133 DVRTERGSDVIIMLVGS 149
+VR + I+LVG+
Sbjct: 252 EVR-HHCPNTPIILVGT 267
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ +F SA + K V L LWDTAG E + L P + V ++ + + + SFH
Sbjct: 185 IPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHH 244
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
+KW +VR + I+LVG K DL D + ++ +G AKE+
Sbjct: 245 VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 303
Query: 318 VMFIETSAKAGYNVKQLF 335
V ++E SA +K +F
Sbjct: 304 VKYLECSALTQRGLKTVF 321
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 26/137 (18%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
K V +G+ +VGKT L+ + ++F Y T+ FDN Y A + +D
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVMVD- 199
Query: 74 LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWID 132
+ V L LWDTAG E + L P + V ++ + + + SFH +KW
Sbjct: 200 --------GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYP 251
Query: 133 DVRTERGSDVIIMLVGS 149
+VR + I+LVG+
Sbjct: 252 EVR-HHCPNTPIILVGT 267
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ +F SA + K V L LWDTAG E + L P + V ++ + + + SFH
Sbjct: 185 IPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHH 244
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
+KW +VR + I+LVG K DL D + ++ +G AKE+
Sbjct: 245 VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 303
Query: 318 VMFIETSAKAGYNVKQLF 335
V ++E SA +K +F
Sbjct: 304 VKYLECSALTQRGLKTVF 321
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAG+E + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 42/174 (24%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y TI D K + ++ T L + DTAG+E + ++ Y+R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 107
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
DV ++LVGNK DL+ R V + + + A+ + +IETSAK
Sbjct: 108 -------------DVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 26/139 (18%)
Query: 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
+ K V +G+ +VGKT L+ + ++F Y T+ FDN Y A + +
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVMV 46
Query: 72 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKW 130
D + V L LWDTAGQE + L P + V ++ + + + SF +KW
Sbjct: 47 D---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 97
Query: 131 IDDVRTERGSDVIIMLVGS 149
+VR + I+LVG+
Sbjct: 98 YPEVR-HHCPNTPIILVGT 115
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ +F SA + K V L LWDTAGQE + L P + V ++ + + + SF
Sbjct: 33 IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
+KW +VR + I+LVG K DL D + ++ +G AKE+
Sbjct: 93 VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 151
Query: 318 VMFIETSAKAGYNVKQLF 335
V ++E SA +K +F
Sbjct: 152 VKYLECSALTQRGLKTVF 169
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 26/139 (18%)
Query: 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
+ K V +G+ +VGKT L+ + ++F Y T+ FDN Y A + +
Sbjct: 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVMV 73
Query: 72 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKW 130
D + V L LWDTAGQE + L P + V ++ + + + SF +KW
Sbjct: 74 D---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 124
Query: 131 IDDVRTERGSDVIIMLVGS 149
+VR + I+LVG+
Sbjct: 125 YPEVR-HHCPNTPIILVGT 142
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 15/171 (8%)
Query: 179 RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTA 238
+G + ++VG+ +S + + +F SA + K V L LWDTA
Sbjct: 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 86
Query: 239 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGNKTD 297
GQE + L P + V ++ + + + SF +KW +VR + I+LVG K D
Sbjct: 87 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLD 145
Query: 298 LSDKR------------QVSTEEGERKAKELN-VMFIETSAKAGYNVKQLF 335
L D + ++ +G AKE+ V ++E SA +K +F
Sbjct: 146 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 26/140 (18%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++ K V +G+ +VGKT L+ + ++F Y T+ FDN Y A +
Sbjct: 2 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVM 46
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
+D + V L LWDTAGQE + L P + V ++ + + + SF +K
Sbjct: 47 VD---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 97
Query: 130 WIDDVRTERGSDVIIMLVGS 149
W +VR I+LVG+
Sbjct: 98 WYPEVR-HHCPHTPILLVGT 116
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 15/147 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ +F SA + K V L LWDTAGQE + L P + V ++ + + + SF
Sbjct: 34 IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 93
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKEL-N 317
+KW +VR I+LVG K DL D + ++ +G A+E+ +
Sbjct: 94 VRAKWYPEVR-HHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGS 152
Query: 318 VMFIETSAKAGYNVKQLFRRVAAALPG 344
V ++E SA +K +F A+ G
Sbjct: 153 VKYLECSALTQRGLKTVFDEAIRAVLG 179
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DT GQE + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 42/180 (23%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y TI D K + ++ T L + DT GQE + ++ Y+R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 107
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
DV ++LVGNK DL+ R V + + + A+ + +IETSAK V+
Sbjct: 108 -------------DVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVE 153
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 26/140 (18%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++ K V +G+ +VGKT L+ + ++F Y T+ FDN Y A +
Sbjct: 2 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVM 46
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
+D + V L LWDTAGQE + L P + V ++ + + + SF +K
Sbjct: 47 VD---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 97
Query: 130 WIDDVRTERGSDVIIMLVGS 149
W +VR I+LVG+
Sbjct: 98 WYPEVR-HHCPHTPILLVGT 116
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 15/147 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ +F SA + K V L LWDTAGQE + L P + V ++ + + + SF
Sbjct: 34 IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 93
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKEL-N 317
+KW +VR I+LVG K DL D + ++ +G A+E+ +
Sbjct: 94 VRAKWYPEVR-HHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGS 152
Query: 318 VMFIETSAKAGYNVKQLFRRVAAALPG 344
V ++E SA +K +F A+ G
Sbjct: 153 VKYLECSALTQRGLKTVFDEAIRAVLG 179
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAG E + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 42/174 (24%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y TI D K + ++ T L + DTAG E + ++ Y+R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 107
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
DV ++LVGNK DL+ R V + + + A+ + +IETSAK
Sbjct: 108 -------------DVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 60/115 (52%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
++ +WDTAGQE+ L Y ++ A++ +D+T+ + ++W+ + + G++ I
Sbjct: 61 IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPI 120
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
++ NK D+ +++++S + K N + E SAK +N F +A G
Sbjct: 121 VVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTG 175
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR--TVRLQLWDTAGQERFRSLIPS 104
VGKT+ I R + F+ Y AT+G +L+D+ ++ +WDTAGQE+ L
Sbjct: 22 VGKTTYINRVLDGRFEKNYNATVGA-VNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDV 80
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGS 149
Y ++ A++ +D+T+ + ++W+ + + G++ I++ +
Sbjct: 81 YYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCAN 125
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 26/140 (18%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++ K V +G+ +VGKT L+ + ++F Y T+ FDN Y A +
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVM 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
+D + V L LWDTAGQE + L P + V ++ + + + SF +K
Sbjct: 46 VD---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 96
Query: 130 WIDDVRTERGSDVIIMLVGS 149
W +VR I+LVG+
Sbjct: 97 WYPEVR-HHCPHTPILLVGT 115
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ +F SA + K V L LWDTAGQE + L P + V ++ + + + SF
Sbjct: 33 IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKEL-N 317
+KW +VR I+LVG K DL D + ++ +G A+E+ +
Sbjct: 93 VRAKWYPEVR-HHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGS 151
Query: 318 VMFIETSAKAGYNVKQLF 335
V ++E SA +K +F
Sbjct: 152 VKYLECSALTQRGLKTVF 169
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 26/139 (18%)
Query: 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
+ K V +G+ +VGKT L+ + ++F Y T+ FDN Y A + +
Sbjct: 12 QAIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTV--------------FDN-YSANVMV 56
Query: 72 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKW 130
D + V L LWDTAGQE + L P + V ++ + + + SF +KW
Sbjct: 57 D---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 107
Query: 131 IDDVRTERGSDVIIMLVGS 149
+VR + I+LVG+
Sbjct: 108 YPEVR-HHCPNTPIILVGT 125
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ +F SA + K V L LWDTAGQE + L P + V ++ + + + SF
Sbjct: 43 IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 102
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
+KW +VR + I+LVG K DL D + ++ +G AKE+
Sbjct: 103 VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 161
Query: 318 VMFIETSAKAGYNVKQLF 335
V ++E SA +K +F
Sbjct: 162 VKYLECSALTQRGLKTVF 179
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAGQE ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 42/180 (23%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y TI D K + ++ T L + DTAGQE ++ Y+R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 107
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
DV ++LVGNK DL+ R V + + + A+ + +IETSAK V+
Sbjct: 108 -------------DVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVE 153
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 26/139 (18%)
Query: 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
+ K V +G+ +VGKT L+ + ++F Y T+ FDN Y A + +
Sbjct: 8 QAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVMV 52
Query: 72 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKW 130
D + V L LWDTAGQE + L P + V ++ + + + S+ +KW
Sbjct: 53 D---------SKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKW 103
Query: 131 IDDVRTERGSDVIIMLVGS 149
+VR S II LVG+
Sbjct: 104 FPEVRHHCPSTPII-LVGT 121
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ +F SA + K V L LWDTAGQE + L P + V ++ + + + S+
Sbjct: 39 IPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYEN 98
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
+KW +VR S II LVG K DL D + ++ +G AKE++
Sbjct: 99 VRAKWFPEVRHHCPSTPII-LVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDS 157
Query: 318 VMFIETSAKAGYNVKQLF 335
V ++E SA +K +F
Sbjct: 158 VKYLECSALTQRGLKTVF 175
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
KQV L LWDTAGQE + L P D+ V ++ + + + +S KW+ +V+ +
Sbjct: 71 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPN 129
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-------------MFIETSAKAGYNVKQ 333
V I+LV NK DL V TE K + + ++E SAK V++
Sbjct: 130 VPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVRE 189
Query: 334 LF 335
+F
Sbjct: 190 VF 191
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 27/144 (18%)
Query: 7 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQ 66
F + +RK KLV +G+ + GKT L+ F D F Y T+ F+N Y
Sbjct: 20 FQSMIRK-KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV--------------FEN-YV 63
Query: 67 ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 126
A I +D + V L LWDTAGQE + L P D+ V ++ + + + +S
Sbjct: 64 ADIEVD---------GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLEN 114
Query: 127 -TSKWIDDVRTERGSDVIIMLVGS 149
KW+ +V+ +V I+LV +
Sbjct: 115 IPEKWVPEVK-HFCPNVPIILVAN 137
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 15/129 (11%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSD 286
KQ L L+DTAGQE + L P + V ++ + + N SF +W+ +++ E +
Sbjct: 64 KQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK-EYAPN 122
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQ 333
V +L+G + DL D ++ + E+G++ AKE+ ++E SA +K
Sbjct: 123 VPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKT 182
Query: 334 LFRRVAAAL 342
+F A+
Sbjct: 183 VFDEAIIAI 191
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 82/186 (44%), Gaps = 33/186 (17%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ + D+F Y T+ D + ++ + + L L+DTAGQE + L P
Sbjct: 29 VGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSY 87
Query: 107 RDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
+ V ++ + + N SF +W+ +++ E +V +L+G T +
Sbjct: 88 PMTDVFLICFSVVNPASFQNVKEEWVPELK-EYAPNVPFLLIG------TQIDLR----- 135
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAG 224
DD +T + D+ +K + E+G++ AKE+ ++E SA
Sbjct: 136 -------DDPKT----------LARLNDMKEK-PICVEQGQKLAKEIGACCYVECSALTQ 177
Query: 225 YNVKQV 230
+K V
Sbjct: 178 KGLKTV 183
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAG E + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 58 LDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 118 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 161
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 42/174 (24%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y TI D K + ++ T L + DTAG E + ++ Y+R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 112
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
DV ++LVGNK DL+ R V + + + A+ + +IETSAK
Sbjct: 113 -------------DVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAK 152
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTA QE + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 113 LVGNKXDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 42/180 (23%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y TI D K + ++ T L + DTA QE + ++ Y+R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 107
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
DV ++LVGNK DL+ R V + + + A+ + +IETSAK V+
Sbjct: 108 -------------DVPMVLVGNKXDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVE 153
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 6/93 (6%)
Query: 249 SYIRDSTVA-----VVVYDITNANSFHQTSKWIDDVRTERGS-DVIIMLVGNKTDLSDKR 302
++RD + ++V+ +T+ SF + + + +R R D+ ++LVGNK+DL+ R
Sbjct: 87 GWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSR 146
Query: 303 QVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
+VS EEG A L+ IETSA +N ++LF
Sbjct: 147 EVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 179
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 94/233 (40%), Gaps = 80/233 (34%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
FK++ +GE VGK++L F D+ ++ ++ ++TY+ I +D
Sbjct: 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEP--------------ENPEDTYERRIMVDK 69
Query: 74 LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA-----VVVYDITNANSFHQTS 128
T+ + D +W+ ++RD + ++V+ +T+ SF +
Sbjct: 70 EEVTLVVYD------IWEQGDA-------GGWLRDHCLQTGDAFLIVFSVTDRRSFSKVP 116
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
+ + +R R HH D+ ++LV
Sbjct: 117 ETLLRLRAGRP--------------------HH--------------------DLPVILV 136
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN--------VKQVRLQ 233
GNK+DL+ R+VS EEG A L+ IETSA +N V+Q+RL+
Sbjct: 137 GNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 189
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAG E + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 42/174 (24%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y TI D K + ++ T L + DTAG E + ++ Y+R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 107
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
DV ++LVGNK DL+ R V + + + A+ + +IETSAK
Sbjct: 108 -------------DVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTA QE + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 113 LVGNKXDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 42/174 (24%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y TI D K + ++ T L + DTA QE + ++ Y+R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 107
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
DV ++LVGNK DL+ R V + + + A+ + +IETSAK
Sbjct: 108 -------------DVPMVLVGNKXDLA-ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAG E + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 42/174 (24%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y TI D K + ++ T L + DTAG E + ++ Y+R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 107
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
DV ++LVGNK DL+ R V + + + A+ + +IETSAK
Sbjct: 108 -------------DVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 26/143 (18%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G ++ K V +G+ +VGKT L+ + ++F Y T+ FDN Y A
Sbjct: 1 GPHMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSA 45
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
+ +D + V L LWDTAG E + L P + V ++ + + + SF
Sbjct: 46 NVMVD---------GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENV 96
Query: 128 -SKWIDDVRTERGSDVIIMLVGS 149
+KW +VR + I+LVG+
Sbjct: 97 RAKWYPEVR-HHCPNTPIILVGT 118
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ +F SA + K V L LWDTAG E + L P + V ++ + + + SF
Sbjct: 36 IPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 95
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
+KW +VR + I+LVG K DL D + ++ +G AKE+
Sbjct: 96 VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 154
Query: 318 VMFIETSAKAGYNVKQLF 335
V ++E SA +K +F
Sbjct: 155 VKYLECSALTQRGLKTVF 172
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAG E + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 42/174 (24%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y TI D K + ++ T L + DTAG E + ++ Y+R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 107
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
DV ++LVGNK DL+ R V + + + A+ + +IETSAK
Sbjct: 108 -------------DVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 258 VVVYDITNANSFHQTSKWIDDVRTERGS-DVIIMLVGNKTDLSDKRQVSTEEGERKAKEL 316
++V+ +T+ SF + + + +R R D+ ++LVGNK+DL+ R+VS EEG A L
Sbjct: 80 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL 139
Query: 317 NVMFIETSAKAGYNVKQLF 335
+ IETSA +N ++LF
Sbjct: 140 SCKHIETSAALHHNTRELF 158
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 93/228 (40%), Gaps = 70/228 (30%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
FK++ +GE VGK++L F D+ ++ ++ ++TY+ I +D
Sbjct: 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHE--------------MENSEDTYERRIMVDK 48
Query: 74 LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
T+ + D +W+ + L ++ ++V+ +T+ SF + + +
Sbjct: 49 EEVTLIVYD------IWEQGDAGGW--LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR 100
Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
+R R HH D+ ++LVGNK+D
Sbjct: 101 LRAGRP--------------------HH--------------------DLPVILVGNKSD 120
Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYN--------VKQVRLQ 233
L+ R+VS EEG A L+ IETSA +N V+Q+RL+
Sbjct: 121 LARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAG E + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 42/174 (24%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y TI D K + ++ T L + DTAG E + ++ Y+R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 107
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
DV ++LVGNK DL+ R V + + + A+ + +IETSAK
Sbjct: 108 -------------DVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
L + DTAG E + ++ Y+R + V+ I N SF ++ + + R + DV ++
Sbjct: 53 LDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
LVGNK DL+ R V + + + A+ + +IETSAK V+ F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 42/174 (24%)
Query: 49 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 108
K++L + + + F + Y TI D K + ++ T L + DTAG E + ++ Y+R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 109 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168
+ V+ I N SF ++ + ++ + SD
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------------------- 107
Query: 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
DV ++LVGNK DL+ R V + + + A+ + +IETSAK
Sbjct: 108 -------------DVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 258 VVVYDITNANSFHQTSKWIDDVRTERGS-DVIIMLVGNKTDLSDKRQVSTEEGERKAKEL 316
++V+ +T+ SF + + + +R R D+ ++LVGNK+DL+ R+VS EEG A L
Sbjct: 90 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL 149
Query: 317 NVMFIETSAKAGYNVKQLF 335
+ IETSA +N ++LF
Sbjct: 150 SCKHIETSAALHHNTRELF 168
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 93/228 (40%), Gaps = 70/228 (30%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
FK++ LGE VGK++L F DN ++ ++ ++TY+ I +D
Sbjct: 13 FKVMLLGESGVGKSTLAGTFGGLQGDNAHE--------------MENSEDTYERRIMVDK 58
Query: 74 LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
T+ + D +W+ + L ++ ++V+ +T+ SF + + +
Sbjct: 59 EEVTLIVYD------IWEQGDAGGW--LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR 110
Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
+R R HH D+ ++LVGNK+D
Sbjct: 111 LRAGR--------------------PHH--------------------DLPVILVGNKSD 130
Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYN--------VKQVRLQ 233
L+ R+VS EEG A L+ IETSA +N V+Q+RL+
Sbjct: 131 LARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 178
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 26/140 (18%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++ K V +G+ +VGKT L+ + ++F Y T+ FDN Y A +
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVM 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
+D + V L LWDTAG E + L P + V ++ + + + SF +K
Sbjct: 46 VD---------GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 96
Query: 130 WIDDVRTERGSDVIIMLVGS 149
W +VR + I+LVG+
Sbjct: 97 WYPEVR-HHCPNTPIILVGT 115
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ +F SA + K V L LWDTAG E + L P + V ++ + + + SF
Sbjct: 33 IPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
+KW +VR + I+LVG K DL D + ++ +G AKE+
Sbjct: 93 VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 151
Query: 318 VMFIETSAKAGYNVKQLF 335
V ++E SA +K +F
Sbjct: 152 VKYLECSALTQRGLKTVF 169
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 27/140 (19%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+RK KLV +G+ + GKT L+ F D F Y T+ F+N Y A I
Sbjct: 4 IRK-KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTV--------------FEN-YVADIE 47
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSK 129
+D + V L LWDTAGQE + P D+ V ++ + I + +S K
Sbjct: 48 VD---------GKQVELALWDTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEK 98
Query: 130 WIDDVRTERGSDVIIMLVGS 149
W +V+ +V I+LVG+
Sbjct: 99 WTPEVK-HFCPNVPIILVGN 117
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
KQV L LWDTAGQE + P D+ V ++ + I + +S KW +V+ +
Sbjct: 51 KQVELALWDTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 109
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
V I+LVGNK DL + + V EG A + ++E SAK V++
Sbjct: 110 VPIILVGNKKDLRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVRE 169
Query: 334 LF 335
+F
Sbjct: 170 VF 171
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 15/171 (8%)
Query: 179 RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTA 238
+G + ++VG+ +S + + +F SA + K V L LWDTA
Sbjct: 27 QGQAIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 86
Query: 239 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGNKTD 297
GQE + L P + V ++ + + + SF +KW +VR + I+LVG K D
Sbjct: 87 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLD 145
Query: 298 LSDKR------------QVSTEEGERKAKELN-VMFIETSAKAGYNVKQLF 335
L D + ++ +G AKE+ V ++E SA +K +F
Sbjct: 146 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 26/139 (18%)
Query: 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
+ K V +G+ +VGKT L+ + ++ Y T+ FDN Y A + +
Sbjct: 29 QAIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTV--------------FDN-YSANVMV 73
Query: 72 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKW 130
D + V L LWDTAGQE + L P + V ++ + + + SF +KW
Sbjct: 74 D---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 124
Query: 131 IDDVRTERGSDVIIMLVGS 149
+VR + I+LVG+
Sbjct: 125 YPEVR-HHCPNTPIILVGT 142
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 26/137 (18%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
K V +G+ +VGKT L+ + ++F Y T+ FDN Y A + +D
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVMVD- 47
Query: 74 LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWID 132
+ V L LWDTAG E + L P + V ++ + + + SF +KW
Sbjct: 48 --------GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYP 99
Query: 133 DVRTERGSDVIIMLVGS 149
+VR + I+LVG+
Sbjct: 100 EVR-HHCPNTPIILVGT 115
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ +F SA + K V L LWDTAG E + L P + V ++ + + + SF
Sbjct: 33 IPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
+KW +VR + I+LVG K DL D + ++ +G AKE+
Sbjct: 93 VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 151
Query: 318 VMFIETSAKAGYNVKQLF 335
V ++E SA +K +F
Sbjct: 152 VKYLECSALTQRGLKTVF 169
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 26/139 (18%)
Query: 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
+ K V +G+ +VGKT L+ + ++F Y T+ FDN Y A + +
Sbjct: 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVMV 73
Query: 72 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKW 130
D + V L LWDTAG E + L P + V ++ + + + SF +KW
Sbjct: 74 D---------GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 124
Query: 131 IDDVRTERGSDVIIMLVGS 149
+VR + I+LVG+
Sbjct: 125 YPEVR-HHCPNTPIILVGT 142
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 15/171 (8%)
Query: 179 RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTA 238
+G + ++VG+ +S + + +F SA + K V L LWDTA
Sbjct: 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 86
Query: 239 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGNKTD 297
G E + L P + V ++ + + + SF +KW +VR + I+LVG K D
Sbjct: 87 GLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLD 145
Query: 298 LSDKR------------QVSTEEGERKAKELN-VMFIETSAKAGYNVKQLF 335
L D + ++ +G AKE+ V ++E SA +K +F
Sbjct: 146 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 25/135 (18%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
+ +G N + K+V +G+ +VGKT L+ F Y T+ F
Sbjct: 12 TGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTV--------------F 57
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
+N S M ++ L LWDTAGQE + L P DS V ++ + + N
Sbjct: 58 EN----------FSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNR 107
Query: 122 NSFHQTS-KWIDDVR 135
SF S KW +++
Sbjct: 108 TSFDNISTKWEPEIK 122
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 20/174 (11%)
Query: 176 RTERGSDVI-IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
+ E G + I++VG+ ++ +GE + +F S Y ++ L L
Sbjct: 16 KIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHL 75
Query: 235 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KW-------IDDVRTERGSD 286
WDTAGQE + L P DS V ++ + + N SF S KW ID +T
Sbjct: 76 WDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKT----- 130
Query: 287 VIIMLVGNKTDL--SDKRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
+LVG K DL V+ +EG+ ++L V +IE S+ A + ++F +
Sbjct: 131 ---VLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEK 181
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 25/135 (18%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
+ +G N + K+V +G+ +VGKT L+ F Y T+ F
Sbjct: 11 TGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTV--------------F 56
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
+N S M ++ L LWDTAGQE + L P DS V ++ + + N
Sbjct: 57 EN----------FSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNR 106
Query: 122 NSFHQTS-KWIDDVR 135
SF S KW +++
Sbjct: 107 TSFDNISTKWEPEIK 121
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 20/174 (11%)
Query: 176 RTERGSDVI-IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
+ E G + I++VG+ ++ +GE + +F S Y ++ L L
Sbjct: 15 KIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHL 74
Query: 235 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KW-------IDDVRTERGSD 286
WDTAGQE + L P DS V ++ + + N SF S KW ID +T
Sbjct: 75 WDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKT----- 129
Query: 287 VIIMLVGNKTDL--SDKRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
+LVG K DL V+ +EG+ ++L V +IE S+ A + ++F +
Sbjct: 130 ---VLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEK 180
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 60/213 (28%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
K K+V +G+ GKT+L+ F D F Y T+ F+N Y A+ ID
Sbjct: 28 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV--------------FEN-YTASFEID 72
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWI 131
+ + L LWDT+G + ++ P DS ++ +DI+ + KW
Sbjct: 73 ---------TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWK 123
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
+++ E + ++LVG D+RT+ V
Sbjct: 124 GEIQ-EFCPNTKMLLVGCKS----------------------DLRTD---------VSTL 151
Query: 192 TDLSDKRQ--VSTEEGERKAKELNVM-FIETSA 221
+LS+ RQ VS ++G AK++ +IE SA
Sbjct: 152 VELSNHRQTPVSYDQGANMAKQIGAATYIECSA 184
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 16/132 (12%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERG 284
+ +++ L LWDT+G + ++ P DS ++ +DI+ + KW +++ E
Sbjct: 72 DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFC 130
Query: 285 SDVIIMLVGNKTD----------LSDKRQ--VSTEEGERKAKELNVM-FIETSAKAGYN- 330
+ ++LVG K+D LS+ RQ VS ++G AK++ +IE SA N
Sbjct: 131 PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENS 190
Query: 331 VKQLFRRVAAAL 342
V+ +F A
Sbjct: 191 VRDIFHVATLAC 202
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 60/213 (28%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
K K+V +G+ GKT+L+ F D F Y T+ F+N Y A+ ID
Sbjct: 23 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV--------------FEN-YTASFEID 67
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWI 131
+ + L LWDT+G + ++ P DS ++ +DI+ + KW
Sbjct: 68 ---------TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWK 118
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
+++ E + ++LVG D+RT+ V
Sbjct: 119 GEIQ-EFCPNTKMLLVGCKS----------------------DLRTD---------VSTL 146
Query: 192 TDLSDKRQ--VSTEEGERKAKELNVM-FIETSA 221
+LS+ RQ VS ++G AK++ +IE SA
Sbjct: 147 VELSNHRQTPVSYDQGANMAKQIGAATYIECSA 179
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 16/132 (12%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERG 284
+ +++ L LWDT+G + ++ P DS ++ +DI+ + KW +++ E
Sbjct: 67 DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFC 125
Query: 285 SDVIIMLVGNKTD----------LSDKRQ--VSTEEGERKAKELNVM-FIETSAKAGYN- 330
+ ++LVG K+D LS+ RQ VS ++G AK++ +IE SA N
Sbjct: 126 PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENS 185
Query: 331 VKQLFRRVAAAL 342
V+ +F A
Sbjct: 186 VRDIFHVATLAC 197
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 60/213 (28%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
K K+V +G+ GKT+L+ F D F Y T+ F+N Y A+ ID
Sbjct: 7 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV--------------FEN-YTASFEID 51
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWI 131
+ + L LWDT+G + ++ P DS ++ +DI+ + KW
Sbjct: 52 ---------TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWK 102
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
+++ E + ++LVG D+RT+ V
Sbjct: 103 GEIQ-EFCPNTKMLLVGCKS----------------------DLRTD---------VSTL 130
Query: 192 TDLSDKRQ--VSTEEGERKAKELNVM-FIETSA 221
+LS+ RQ VS ++G AK++ +IE SA
Sbjct: 131 VELSNHRQTPVSYDQGANMAKQIGAATYIECSA 163
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 16/143 (11%)
Query: 215 MFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-S 273
+F +A + +++ L LWDT+G + ++ P DS ++ +DI+ +
Sbjct: 40 VFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLK 99
Query: 274 KWIDDVRTERGSDVIIMLVGNKTD----------LSDKRQ--VSTEEGERKAKELNVM-F 320
KW +++ E + ++LVG K+D LS+ RQ VS ++G AK++ +
Sbjct: 100 KWKGEIQ-EFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATY 158
Query: 321 IETSAKAGYN-VKQLFRRVAAAL 342
IE SA N V+ +F A
Sbjct: 159 IECSALQSENSVRDIFHVATLAC 181
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 64/128 (50%), Gaps = 23/128 (17%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+ K+ +GE +VGK++LI+ F TS ++F+ D Y T G++
Sbjct: 20 RCKVAVVGEATVGKSALISMF----------------TSKGSKFLKD-----YAMTSGVE 58
Query: 73 FLSKTMYLEDRTVRLQLW--DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
+ + + D TV ++L+ DTAG + ++ I Y A++V+D+++ SF W
Sbjct: 59 VVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAW 118
Query: 131 IDDVRTER 138
+ +++ R
Sbjct: 119 FELLKSAR 126
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID---DVRTERGSD 286
V L L DTAG + ++ I Y A++V+D+++ SF W + R +R
Sbjct: 73 VELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERP 132
Query: 287 VIIMLVGNKTDLSDKR-QVSTEEGERKAKELNVMFIETSA-KAGYNVKQLFRRVA 339
+ +LV NKTDL +R QV + + A + F + SA G + F +A
Sbjct: 133 LRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIA 187
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
L L+DTAGQE + L P + V +V + + + +SF KW+ ++ T +
Sbjct: 56 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 114
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
LVG + DL D ++ ++ E E+ A++L V ++E SA +K +F
Sbjct: 115 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 174
Query: 338 VAAALPGMDSTENK 351
A L ++ E K
Sbjct: 175 --AILAALEPPEPK 186
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 92/225 (40%), Gaps = 56/225 (24%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G+ ++ K V +G+ +VGKT L+ + + F + Y T+ FDN Y
Sbjct: 1 GSHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV--------------FDN-YAV 45
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
T+ I T L L+DTAGQE + L P + V +V + + + +SF
Sbjct: 46 TVMIGGEPYT---------LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 96
Query: 128 -SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
KW+ ++ T +LVG T + DD T I
Sbjct: 97 KEKWVPEI-THHCPKTPFLLVG------TQIDLR------------DDPST------IEK 131
Query: 187 LVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
L NK ++ ++ E E+ A++L V ++E SA +K V
Sbjct: 132 LAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNV 171
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
L L+DTAGQE + L P + V +V + + + +SF KW+ ++ T +
Sbjct: 53 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 111
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
LVG + DL D ++ ++ E E+ A++L V ++E SA +K +F
Sbjct: 112 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
Query: 338 VAAALPGMDSTENK 351
A L ++ E K
Sbjct: 172 --AILAALEPPEPK 183
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 90/222 (40%), Gaps = 56/222 (25%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++ K V +G+ +VGKT L+ + + F + Y T+ FDN Y T+
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV--------------FDN-YAVTVM 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
I T L L+DTAGQE + L P + V +V + + + +SF K
Sbjct: 46 IGGEPYT---------LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 96
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
W+ ++ T +LVG T + DD T I L
Sbjct: 97 WVPEI-THHCPKTPFLLVG------TQIDLR------------DDPST------IEKLAK 131
Query: 190 NKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
NK ++ ++ E E+ A++L V ++E SA +K V
Sbjct: 132 NK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNV 168
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
L L+DTAGQE + L P + V +V + + + +SF KW+ ++ T +
Sbjct: 55 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 113
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
LVG + DL D ++ ++ E E+ A++L V ++E SA +K +F
Sbjct: 114 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 173
Query: 338 VAAALPGMDSTENK 351
A L ++ E K
Sbjct: 174 --AILAALEPPEPK 185
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 90/222 (40%), Gaps = 56/222 (25%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++ K V +G+ +VGKT L+ + + F + Y T+ FDN Y T+
Sbjct: 3 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV--------------FDN-YAVTVM 47
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
I T L L+DTAGQE + L P + V +V + + + +SF K
Sbjct: 48 IGGEPYT---------LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 98
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
W+ ++ T +LVG T + DD T I L
Sbjct: 99 WVPEI-THHCPKTPFLLVG------TQIDLR------------DDPST------IEKLAK 133
Query: 190 NKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
NK ++ ++ E E+ A++L V ++E SA +K V
Sbjct: 134 NK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNV 170
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
L L+DTAGQE + L P + V +V + + + +SF KW+ ++ T +
Sbjct: 53 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 111
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
LVG + DL D ++ ++ E E+ A++L V ++E SA +K +F
Sbjct: 112 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
Query: 338 VAAALPGMDSTENK 351
A L ++ E K
Sbjct: 172 --AILAALEPPEPK 183
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 88/218 (40%), Gaps = 56/218 (25%)
Query: 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL 74
K V +G+ +VGKT L+ + + F + Y T+ FDN Y T+ I
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV--------------FDN-YAVTVXIGGE 49
Query: 75 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDD 133
T L L+DTAGQE + L P + V +V + + + +SF KW+ +
Sbjct: 50 PYT---------LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 100
Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
+ T +LVG T + DD T I L NK
Sbjct: 101 I-THHCPKTPFLLVG------TQIDLR------------DDPST------IEKLAKNK-- 133
Query: 194 LSDKRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
++ ++ E E+ A++L V ++E SA +K V
Sbjct: 134 ---QKPITPETAEKLARDLKAVKYVECSALTQKGLKNV 168
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
L L+DTAGQE + L P + V +V + + + +SF KW+ ++ T +
Sbjct: 53 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 111
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
LVG + DL D ++ ++ E E+ A++L V ++E SA +K +F
Sbjct: 112 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
Query: 338 VAAALPGMDSTENK 351
A L ++ E K
Sbjct: 172 --AILAALEPPEPK 183
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 90/222 (40%), Gaps = 56/222 (25%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++ K V +G+ +VGKT L+ + + F + Y T+ FDN Y T+
Sbjct: 1 MQTIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTV--------------FDN-YAVTVM 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
I T L L+DTAGQE + L P + V +V + + + +SF K
Sbjct: 46 IGGEPYT---------LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 96
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
W+ ++ T +LVG T + DD T I L
Sbjct: 97 WVPEI-THHCPKTPFLLVG------TQIDLR------------DDPST------IEKLAK 131
Query: 190 NKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
NK ++ ++ E E+ A++L V ++E SA +K V
Sbjct: 132 NK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNV 168
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
L L+DTAGQE + L P + V +V + + + +SF KW+ ++ T +
Sbjct: 53 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 111
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
LVG + DL D ++ ++ E E+ A++L V ++E SA +K +F
Sbjct: 112 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
Query: 338 VAAALPGMDSTENK 351
A L ++ E K
Sbjct: 172 --AILAALEPPEPK 183
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 90/222 (40%), Gaps = 56/222 (25%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++ K V +G+ +VGKT L+ + + F + Y T+ FDN Y T+
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV--------------FDN-YAVTVM 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
I T L L+DTAGQE + L P + V +V + + + +SF K
Sbjct: 46 IGGEPYT---------LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 96
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
W+ ++ T +LVG T + DD T I L
Sbjct: 97 WVPEI-THHCPKTPFLLVG------TQIDLR------------DDPST------IEKLAK 131
Query: 190 NKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
NK ++ ++ E E+ A++L V ++E SA +K V
Sbjct: 132 NK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNV 168
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
L L+DTAGQE + L P + V +V + + + +SF KW+ ++ T +
Sbjct: 53 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 111
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
LVG + DL D ++ ++ E E+ A++L V ++E SA +K +F
Sbjct: 112 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
Query: 338 VAAALPGMDSTENK 351
A L ++ E K
Sbjct: 172 --AILAALEPPEPK 183
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 90/222 (40%), Gaps = 56/222 (25%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++ K V +G+ +VGKT L+ + + F + Y T+ FDN Y T+
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV--------------FDN-YAVTVM 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
I T L L+DTAGQE + L P + V +V + + + +SF K
Sbjct: 46 IGGEPYT---------LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 96
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
W+ ++ T +LVG T + DD T I L
Sbjct: 97 WVPEI-THHCPKTPFLLVG------TQIDLR------------DDPST------IEKLAK 131
Query: 190 NKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
NK ++ ++ E E+ A++L V ++E SA +K V
Sbjct: 132 NK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNV 168
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
L L+DTAGQE + L P + V +V + + + +SF KW+ ++ T +
Sbjct: 54 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 112
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
LVG + DL D ++ ++ E E+ A++L V ++E SA +K +F
Sbjct: 113 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 172
Query: 338 VAAALPGMDSTENK 351
A L ++ E K
Sbjct: 173 --AILAALEPPEPK 184
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 90/222 (40%), Gaps = 56/222 (25%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++ K V +G+ +VGKT L+ + + F + Y T+ FDN Y T+
Sbjct: 2 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV--------------FDN-YAVTVM 46
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
I T L L+DTAGQE + L P + V +V + + + +SF K
Sbjct: 47 IGGEPYT---------LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 97
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
W+ ++ T +LVG T + DD T I L
Sbjct: 98 WVPEI-THHCPKTPFLLVG------TQIDLR------------DDPST------IEKLAK 132
Query: 190 NKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
NK ++ ++ E E+ A++L V ++E SA +K V
Sbjct: 133 NK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNV 169
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
L L+DTAGQE + L P + V +V + + + +SF KW+ ++ T +
Sbjct: 56 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 114
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
LVG + DL D ++ ++ E E+ A++L V ++E SA +K +F
Sbjct: 115 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 174
Query: 338 VAAALPGMDSTENK 351
A L ++ E K
Sbjct: 175 --AILAALEPPEPK 186
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 92/225 (40%), Gaps = 56/225 (24%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G+ ++ K V +G+ +VGKT L+ + + F + Y T+ FDN Y
Sbjct: 1 GSHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV--------------FDN-YAV 45
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
T+ I T L L+DTAGQE + L P + V +V + + + +SF
Sbjct: 46 TVMIGGEPYT---------LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 96
Query: 128 -SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
KW+ ++ T +LVG T + DD T I
Sbjct: 97 KEKWVPEI-THHCPKTPFLLVG------TQIDLR------------DDPST------IEK 131
Query: 187 LVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
L NK ++ ++ E E+ A++L V ++E SA +K V
Sbjct: 132 LAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNV 171
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
L L+DTAGQE + L P + V +V + + + +SF KW+ ++ T +
Sbjct: 63 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 121
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
LVG + DL D ++ ++ E E+ A++L V ++E SA +K +F
Sbjct: 122 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 181
Query: 338 VAAALPGMDSTENK 351
A L ++ E K
Sbjct: 182 --AILAALEPPEPK 193
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 93/232 (40%), Gaps = 56/232 (24%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
M SS + ++ K V +G+ +VGKT L+ + + F + Y T+
Sbjct: 1 MGSSHHHHHHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-------------- 46
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDN Y T+ I L L+DTAGQE + L P + V +V + + +
Sbjct: 47 FDN-YAVTVMIG---------GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS 96
Query: 121 ANSFHQT-SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTER 179
+SF KW+ ++ T +LVG T + DD T
Sbjct: 97 PSSFENVKEKWVPEI-THHCPKTPFLLVG------TQIDLR------------DDPST-- 135
Query: 180 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
I L NK ++ ++ E E+ A++L V ++E SA +K V
Sbjct: 136 ----IEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNV 178
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
L L+DTAGQE + L P + V +V + + + +SF KW+ ++ T +
Sbjct: 60 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 118
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
LVG + DL D ++ ++ E E+ A++L V ++E SA +K +F
Sbjct: 119 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 178
Query: 338 VAAALPGMDSTENK 351
A L ++ E K
Sbjct: 179 --AILAALEPPEPK 190
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 90/222 (40%), Gaps = 56/222 (25%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++ K V +G+ +VGKT L+ + + F + Y T+ FDN Y T+
Sbjct: 8 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV--------------FDN-YAVTVM 52
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
I T L L+DTAGQE + L P + V +V + + + +SF K
Sbjct: 53 IGGEPYT---------LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 103
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
W+ ++ T +LVG T + DD T I L
Sbjct: 104 WVPEI-THHCPKTPFLLVG------TQIDLR------------DDPST------IEKLAK 138
Query: 190 NKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
NK ++ ++ E E+ A++L V ++E SA +K V
Sbjct: 139 NK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNV 175
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
L L+DTAGQE + L P + V +V + + + +SF KW+ ++ T +
Sbjct: 60 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 118
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
LVG + DL D ++ ++ E E+ A++L V ++E SA +K +F
Sbjct: 119 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 178
Query: 338 VAAALPGMDSTENK 351
A L ++ E K
Sbjct: 179 --AILAALEPPEPK 190
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 93/230 (40%), Gaps = 58/230 (25%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
SSG G ++ K V +G+ +VGK L+ + + F + Y T+ FD
Sbjct: 2 SSGSSG--MQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTV--------------FD 45
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
N Y T+ I T L L+DTAGQE + L P + V +V + + + +
Sbjct: 46 N-YAVTVMIGGEPYT---------LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPS 95
Query: 123 SFHQT-SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
SF KW+ ++ T +LVG T + DD T
Sbjct: 96 SFENVKEKWVPEI-THHCPKTPFLLVG------TQIDLR------------DDPST---- 132
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
I L NK ++ ++ E E+ A++L V ++E SA +K V
Sbjct: 133 --IEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNV 175
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
L L+DTAGQE + L P + V +V + + + +SF KW+ ++ T +
Sbjct: 53 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 111
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLF-R 336
LVG + DL D ++ ++ E E+ A++L V ++E SA +K +F
Sbjct: 112 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
Query: 337 RVAAAL 342
+ AAL
Sbjct: 172 AILAAL 177
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 89/222 (40%), Gaps = 56/222 (25%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++ K V +G+ +VGKT L+ + + F + Y T+ FDN Y T+
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV--------------FDN-YAVTVM 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
I L L+DTAGQE + L P + V +V + + + +SF K
Sbjct: 46 IG---------GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 96
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
W+ ++ T +LVG T + DD T I L
Sbjct: 97 WVPEI-THHCPKTPFLLVG------TQIDLR------------DDPST------IEKLAK 131
Query: 190 NKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
NK ++ ++ E E+ A++L V ++E SA +K V
Sbjct: 132 NK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNV 168
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
L L+DTAGQE + L P + V +V + + + +SF KW+ ++ T +
Sbjct: 57 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 115
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLF-R 336
LVG + DL D ++ ++ E E+ A++L V ++E SA +K +F
Sbjct: 116 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 175
Query: 337 RVAAAL 342
+ AAL
Sbjct: 176 AILAAL 181
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 28/146 (19%)
Query: 5 GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT 64
G G+ + K V +G+ +VGKT L+ + + F + Y T+ FDN
Sbjct: 1 GPLGS--QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV--------------FDN- 43
Query: 65 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 124
Y T+ I L L+DTAGQE + L P + V +V + + + +SF
Sbjct: 44 YAVTVMIG---------GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 94
Query: 125 HQT-SKWIDDVRTERGSDVIIMLVGS 149
KW+ ++ T +LVG+
Sbjct: 95 ENVKEKWVPEI-THHCPKTPFLLVGT 119
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
L L+DTAGQE + L P + V +V + + + +SF KW+ ++ T +
Sbjct: 55 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 113
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLF-R 336
LVG + DL D ++ ++ E E+ A++L V ++E SA +K +F
Sbjct: 114 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 173
Query: 337 RVAAAL 342
+ AAL
Sbjct: 174 AILAAL 179
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 26/140 (18%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++ K V +G+ +VGKT L+ + + F + Y T+ FDN Y T+
Sbjct: 3 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV--------------FDN-YAVTVM 47
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
I L L+DTAGQE + L P + V +V + + + +SF K
Sbjct: 48 IG---------GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 98
Query: 130 WIDDVRTERGSDVIIMLVGS 149
W+ ++ T +LVG+
Sbjct: 99 WVPEI-THHCPKTPFLLVGT 117
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
L L+DTAGQE + L P + V +V + + + +SF KW+ ++ T +
Sbjct: 53 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 111
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLF-R 336
LVG + DL D ++ ++ E E+ A++L V ++E SA +K +F
Sbjct: 112 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
Query: 337 RVAAAL 342
+ AAL
Sbjct: 172 AILAAL 177
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 26/140 (18%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++ K V +G+ +VGKT L+ + + F + Y T+ FDN Y T+
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV--------------FDN-YAVTVM 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
I L L+DTAGQE + L P + V +V + + + +SF K
Sbjct: 46 IG---------GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 96
Query: 130 WIDDVRTERGSDVIIMLVGS 149
W+ ++ T +LVG+
Sbjct: 97 WVPEI-THHCPKTPFLLVGT 115
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
L L+DTAGQE + L P + V +V + + + +SF KW+ ++ T +
Sbjct: 53 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 111
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLF-R 336
LVG + DL D ++ ++ E E+ A++L V ++E SA +K +F
Sbjct: 112 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDE 171
Query: 337 RVAAAL 342
+ AAL
Sbjct: 172 AILAAL 177
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 87/218 (39%), Gaps = 56/218 (25%)
Query: 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL 74
K V +G+ +VGKT L+ + + F + Y T+ FDN Y T+ I
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV--------------FDN-YAVTVMIG-- 47
Query: 75 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDD 133
L L+DTAGQE + L P + V +V + + + +SF KW+ +
Sbjct: 48 -------GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 100
Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
+ T +LVG T + DD T I L NK
Sbjct: 101 I-THHCPKTPFLLVG------TQIDLR------------DDPST------IEKLAKNK-- 133
Query: 194 LSDKRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
++ ++ E E+ A++L V ++E SA +K V
Sbjct: 134 ---QKPITPETAEKLARDLKAVKYVECSALTQRGLKNV 168
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
L L+DTAGQE + L P + V +V + + + +SF KW+ ++ T +
Sbjct: 53 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 111
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLF-R 336
LVG + DL D ++ ++ E E+ A++L V ++E SA +K +F
Sbjct: 112 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDE 171
Query: 337 RVAAAL 342
+ AAL
Sbjct: 172 AILAAL 177
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 26/140 (18%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++ K V +G+ +VGKT L+ + + F + Y T+ FDN Y T+
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV--------------FDN-YAVTVM 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
I L L+DTAGQE + L P + V +V + + + +SF K
Sbjct: 46 IG---------GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 96
Query: 130 WIDDVRTERGSDVIIMLVGS 149
W+ ++ T +LVG+
Sbjct: 97 WVPEI-THHCPKTPFLLVGT 115
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
L L+DTAGQE + L P + V +V + + + +SF KW+ ++ T +
Sbjct: 53 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 111
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLF-R 336
LVG + DL D ++ ++ E E+ A++L V ++E SA +K +F
Sbjct: 112 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
Query: 337 RVAAAL 342
+ AAL
Sbjct: 172 AILAAL 177
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 26/140 (18%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++ K V +G+ +VGKT L+ + + + Y T+ FDN Y T+
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTV--------------FDN-YAVTVM 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
I L L+DTAGQE + L P + V +V + + + +SF K
Sbjct: 46 IG---------GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 96
Query: 130 WIDDVRTERGSDVIIMLVGS 149
W+ ++ T +LVG+
Sbjct: 97 WVPEI-THHCPKTPFLLVGT 115
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
L L+DTAGQE + L P + V +V + + + +SF KW+ ++ T +
Sbjct: 53 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 111
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLF-R 336
LVG + DL D ++ ++ E E+ A++L V ++E SA +K +F
Sbjct: 112 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
Query: 337 RVAAAL 342
+ AAL
Sbjct: 172 AILAAL 177
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 26/140 (18%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++ K V +G+ +VGKT L+ + + F + Y + FDN Y T+
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAV--------------FDN-YAVTVM 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
I L L+DTAGQE + L P + V +V + + + +SF K
Sbjct: 46 IG---------GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 96
Query: 130 WIDDVRTERGSDVIIMLVGS 149
W+ ++ T +LVG+
Sbjct: 97 WVPEI-THHCPKTPFLLVGT 115
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 16/126 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
L L DTAGQE + L P + V +V + + + +SF KW+ ++ T +
Sbjct: 53 LGLRDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 111
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLF-R 336
LVG + DL D ++ ++ E E+ A++L V ++E SA +K +F
Sbjct: 112 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
Query: 337 RVAAAL 342
+ AAL
Sbjct: 172 AILAAL 177
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 26/140 (18%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++ K V +G+ +VGKT L+ + + F + Y T+ FDN Y T+
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV--------------FDN-YAVTVM 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
I T L L DTAGQE + L P + V +V + + + +SF K
Sbjct: 46 IGGEPYT---------LGLRDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 96
Query: 130 WIDDVRTERGSDVIIMLVGS 149
W+ ++ T +LVG+
Sbjct: 97 WVPEI-THHCPKTPFLLVGT 115
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
L L+DTAG E + L P + V +V + + + +SF KW+ ++ T +
Sbjct: 53 LGLFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 111
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
LVG + DL D ++ ++ E E+ A++L V ++E SA +K +F
Sbjct: 112 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
Query: 338 VAAALPGMDSTENK 351
A L ++ E K
Sbjct: 172 --AILAALEPPEPK 183
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 88/222 (39%), Gaps = 56/222 (25%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++ K V +G+ +VGKT L+ + + F + Y T+ FDN Y T+
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV--------------FDN-YAVTVM 45
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
I L L+DTAG E + L P + V +V + + + +SF K
Sbjct: 46 IG---------GEPYTLGLFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 96
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
W+ ++ T +LVG T + DD T I L
Sbjct: 97 WVPEI-THHCPKTPFLLVG------TQIDLR------------DDPST------IEKLAK 131
Query: 190 NKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
NK ++ ++ E E+ A++L V ++E SA +K V
Sbjct: 132 NK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNV 168
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
L L+DTAG E + L P + V +V + + + +SF KW+ ++ T +
Sbjct: 57 LGLFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 115
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
LVG + DL D ++ ++ E E+ A++L V ++E SA +K +F
Sbjct: 116 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 175
Query: 338 VAAALPGMDSTENK 351
A L ++ E K
Sbjct: 176 --AILAALEPPEPK 187
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 26/140 (18%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
++ K V +G+ +VGKT L+ + + F + Y T+ FDN Y T+
Sbjct: 5 IQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV--------------FDN-YAVTVM 49
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
I L L+DTAG E + L P + V +V + + + +SF K
Sbjct: 50 IG---------GEPYTLGLFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK 100
Query: 130 WIDDVRTERGSDVIIMLVGS 149
W+ ++ T +LVG+
Sbjct: 101 WVPEI-THHCPKTPFLLVGT 119
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 29/126 (23%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+ KLV +G+ GKT+++ D + TY T+ F+N Y A +
Sbjct: 10 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV--------------FEN-YTACLET- 53
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWI 131
E++ V L LWDT+G + ++ P DS ++ +DI+ + KW
Sbjct: 54 --------EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKW- 104
Query: 132 DDVRTE 137
RTE
Sbjct: 105 ---RTE 107
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 15/112 (13%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSD 286
++V L LWDT+G + ++ P DS ++ +DI+ + KW ++ +
Sbjct: 56 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPS 114
Query: 287 VIIMLVGNKTD----------LSDKRQ--VSTEEGERKAKELNV-MFIETSA 325
++L+G KTD LS ++Q +S E+G AK+L +++E SA
Sbjct: 115 TRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 166
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 29/126 (23%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+ KLV +G+ GKT+++ D + TY T+ F+N Y A +
Sbjct: 11 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV--------------FEN-YTACLET- 54
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWI 131
E++ V L LWDT+G + ++ P DS ++ +DI+ + KW
Sbjct: 55 --------EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKW- 105
Query: 132 DDVRTE 137
RTE
Sbjct: 106 ---RTE 108
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 15/112 (13%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSD 286
++V L LWDT+G + ++ P DS ++ +DI+ + KW ++ +
Sbjct: 57 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPS 115
Query: 287 VIIMLVGNKTD----------LSDKRQ--VSTEEGERKAKELNV-MFIETSA 325
++L+G KTD LS ++Q +S E+G AK+L +++E SA
Sbjct: 116 TRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 167
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 26/138 (18%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+ KLV +G+ GKT+++ D + TY T+ F+N Y A +
Sbjct: 27 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV--------------FEN-YTACLET- 70
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWI 131
E++ V L LWDT+G + ++ P DS ++ +DI+ + KW
Sbjct: 71 --------EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWR 122
Query: 132 DDVRTERGSDVIIMLVGS 149
++ + ++L+G
Sbjct: 123 TEI-LDYCPSTRVLLIGC 139
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 15/112 (13%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSD 286
++V L LWDT+G + ++ P DS ++ +DI+ + KW ++ +
Sbjct: 73 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPS 131
Query: 287 VIIMLVGNKTD----------LSDKRQ--VSTEEGERKAKELNV-MFIETSA 325
++L+G KTD LS ++Q +S E+G AK+L +++E SA
Sbjct: 132 TRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 183
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 14/97 (14%)
Query: 220 SAKAGYNVK----QVR--------LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 267
SA G +VK Q+R L +WD AG+E F S P + + + VYD++
Sbjct: 32 SATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQ 91
Query: 268 SFHQTSK-WIDDVRTERGSDVIIMLVGNKTDLSDKRQ 303
+ K W+ +++ R S ++LVG D+SD++Q
Sbjct: 92 AEVDAXKPWLFNIKA-RASSSPVILVGTHLDVSDEKQ 127
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 48 GKTSLITRFMYDSFDN--TYQATIGIDFLSKTMYLEDRTVR---LQLWDTAGQERFRSLI 102
GKT+L+ + + AT+GID + + D+ R L +WD AG+E F S
Sbjct: 12 GKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTH 71
Query: 103 PSYIRDSTVAVVVYDITNANSFHQTSK-WIDDVRTERGSDVIIMLVGS 149
P + + + VYD++ + K W+ +++ R S ++LVG+
Sbjct: 72 PHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKA-RASSSPVILVGT 118
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 14/97 (14%)
Query: 220 SAKAGYNVK----QVR--------LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 267
SA G +VK Q+R L +WD AG+E F S P + + + VYD++
Sbjct: 34 SATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQ 93
Query: 268 SFHQTSK-WIDDVRTERGSDVIIMLVGNKTDLSDKRQ 303
+ K W+ +++ R S ++LVG D+SD++Q
Sbjct: 94 AEVDAXKPWLFNIKA-RASSSPVILVGTHLDVSDEKQ 129
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 48 GKTSLITRFMYDSFDN--TYQATIGIDFLSKTMYLEDRTVR---LQLWDTAGQERFRSLI 102
GKT+L+ + + AT+GID + + D+ R L +WD AG+E F S
Sbjct: 14 GKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTH 73
Query: 103 PSYIRDSTVAVVVYDITNANSFHQTSK-WIDDVRTERGSDVIIMLVGS 149
P + + + VYD++ + K W+ +++ R S ++LVG+
Sbjct: 74 PHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKA-RASSSPVILVGT 120
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Query: 217 IETSAKAGYNV-----KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ T G+NV K V+ +WD GQ++ R L Y + + V D + + +
Sbjct: 26 VTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE 85
Query: 272 TSKWIDDVRTER-GSDVIIMLVGNKTDLSD---KRQVSTEEGERKAKELNVMFIETSAKA 327
+ + + +R D II++ NK DL D ++ + G + ++ N + A +
Sbjct: 86 ARQELHRIINDREXRDAIILIFANKQDLPDAXKPHEIQEKLGLTRIRDRNWYVQPSCATS 145
Query: 328 G 328
G
Sbjct: 146 G 146
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Query: 217 IETSAKAGYNV-----KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ T G+NV K V+ +WD GQ++ R L Y + + V D + + +
Sbjct: 26 VTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE 85
Query: 272 TSKWIDDVRTERG-SDVIIMLVGNKTDLSD---KRQVSTEEGERKAKELNVMFIETSAKA 327
+ + + +R D II++ NK DL D ++ + G + ++ N + A +
Sbjct: 86 ARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATS 145
Query: 328 G 328
G
Sbjct: 146 G 146
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Query: 217 IETSAKAGYNV-----KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ T G+NV K V+ +WD GQ++ R L Y + + V D + + +
Sbjct: 26 VTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE 85
Query: 272 TSKWIDDVRTERG-SDVIIMLVGNKTDLSD---KRQVSTEEGERKAKELNVMFIETSAKA 327
+ + + +R D II++ NK DL D ++ + G + ++ N + A +
Sbjct: 86 ARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATS 145
Query: 328 G 328
G
Sbjct: 146 G 146
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Query: 217 IETSAKAGYNV-----KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ T G+NV K V+ +WD GQ++ R L Y + + V D + + +
Sbjct: 38 VTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE 97
Query: 272 TSKWIDDVRTERG-SDVIIMLVGNKTDLSD---KRQVSTEEGERKAKELNVMFIETSAKA 327
+ + + +R D II++ NK DL D ++ + G + ++ N + A +
Sbjct: 98 ARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATS 157
Query: 328 G 328
G
Sbjct: 158 G 158
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Query: 217 IETSAKAGYNV-----KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ T G+NV K V+ +WD GQ++ R L Y + + V D + + +
Sbjct: 39 VTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE 98
Query: 272 TSKWIDDVRTERG-SDVIIMLVGNKTDLSD---KRQVSTEEGERKAKELNVMFIETSAKA 327
+ + + +R D II++ NK DL D ++ + G + ++ N + A +
Sbjct: 99 ARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATS 158
Query: 328 G 328
G
Sbjct: 159 G 159
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 217 IETSAKAGYNV-----KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ T G+NV K V+ +WD GQ++ R L Y + + V D + + +
Sbjct: 348 VTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE 407
Query: 272 TSKWIDDVRTERG-SDVIIMLVGNKTDLSD 300
+ + + +R D II++ NK DL D
Sbjct: 408 ARQELHRIINDREMRDAIILIFANKQDLPD 437
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 224 GYNVKQ-----VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 278
G+N+++ V ++LWD GQ RFRS+ Y R + V + D + + + +
Sbjct: 56 GFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHN 115
Query: 279 VRTE-RGSDVIIMLVGNKTDLS 299
+ + + + ++++GNK DL
Sbjct: 116 LLDKPQLQGIPVLVLGNKRDLP 137
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKT+ + F+ T+G + T V ++LWD GQ RFRS+ Y R
Sbjct: 34 GKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTIKLWDIGGQPRFRSMWERYCR 89
Query: 108 DSTVAVVVYDITNAN 122
V+ +VY + A+
Sbjct: 90 G--VSAIVYMVDAAD 102
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 223 AGYNVKQ-----VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 277
G+N+++ V ++LWD GQ RFRS+ Y R + V + D + + +
Sbjct: 64 VGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELH 123
Query: 278 DVRTE-RGSDVIIMLVGNKTDLS 299
++ + + + ++++GNK DL
Sbjct: 124 NLLDKPQLQGIPVLVLGNKRDLP 146
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKT+ + F+ T+G + T V ++LWD GQ RFRS+ Y R
Sbjct: 43 GKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTIKLWDIGGQPRFRSMWERYCR 98
Query: 108 DSTVAVVVYDITNAN 122
V+ +VY + A+
Sbjct: 99 G--VSAIVYMVDAAD 111
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 19/127 (14%)
Query: 180 GSDVIIMLVG--NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV-----RL 232
GS+V I+L+G N + +Q+++E+ + G+N+K V +L
Sbjct: 2 GSEVRILLLGLDNAGKTTLLKQLASED-----------ISHITPTQGFNIKSVQSQGFKL 50
Query: 233 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK-WIDDVRTERGSDVIIML 291
+WD GQ + R SY ++ + + V D + F +T + + + E+ S V +++
Sbjct: 51 NVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLI 110
Query: 292 VGNKTDL 298
NK DL
Sbjct: 111 FANKQDL 117
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 32 RFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91
R + DN GKT+L+ + + + T G + S ++ + +L +WD
Sbjct: 6 RILLLGLDNA------GKTTLLKQLASEDISHI-TPTQGFNIKS----VQSQGFKLNVWD 54
Query: 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
GQ + R SY ++ + + V D + F +T +
Sbjct: 55 IGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQ 92
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 16/101 (15%)
Query: 216 FIETSAKAGYNV-----KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 270
+ T G+NV K + +WD GQ+R R L Y +++ + V D +
Sbjct: 42 IVTTIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQ 101
Query: 271 QTSK------WIDDVRTERGSDVIIMLVGNKTDLSDKRQVS 305
+ + +D++R D +++L NK DL + +S
Sbjct: 102 EVADELQKMLLVDELR-----DAVLLLFANKQDLPNAMAIS 137
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKT+++ + T TIG + + +E + + +WD GQ+R R L Y +
Sbjct: 29 GKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNICFTVWDVGGQDRIRPLWKHYFQ 83
Query: 108 DSTVAVVVYD 117
++ + V D
Sbjct: 84 NTQGLIFVVD 93
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 16/89 (17%)
Query: 223 AGYNVKQVR-----LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN------SFHQ 271
G+N+++V +++WD GQ RFRS+ Y R V +VY I A+ S ++
Sbjct: 55 VGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRG--VNAIVYMIDAADREKIEASRNE 112
Query: 272 TSKWIDDVRTERGSDVIIMLVGNKTDLSD 300
+D + + + ++++GNK DL +
Sbjct: 113 LHNLLDKPQLQ---GIPVLVLGNKRDLPN 138
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKT+ + F T+G + T V +++WD GQ RFRS+ Y R
Sbjct: 34 GKTTFVNVIASGQFSEDMIPTVGFNMRKVT----KGNVTIKIWDIGGQPRFRSMWERYCR 89
Query: 108 DSTVAVVVYDITNAN 122
V +VY I A+
Sbjct: 90 G--VNAIVYMIDAAD 102
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 11/109 (10%)
Query: 217 IETSAKAGYNV-----KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ T G+NV K ++L +WD GQ R Y D+ + V D T+ +
Sbjct: 44 VTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMST 103
Query: 272 TSKWID-DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM 319
SK + ++ E D +++ NK D Q +KELN++
Sbjct: 104 ASKELHLMLQEEELQDAALLVFANKQD-----QPGALSASEVSKELNLV 147
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKT+++ R T + TIG + + L + ++L +WD GQ R Y
Sbjct: 30 GKTTILYRLQIGEVVTT-KPTIGFNVET----LSYKNLKLNVWDLGGQTSIRPYWRCYYA 84
Query: 108 DSTVAVVVYDITNANSFHQTSK 129
D+ + V D T+ + SK
Sbjct: 85 DTAAVIFVVDSTDKDRMSTASK 106
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT---ERG 284
+ V L++ DTA + R+ Y+ + +VVY + + SF +S +++ + E
Sbjct: 67 QPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQ 125
Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY-NVKQLF 335
+ +L+GNK D++ RQV+ EG A +F E SA + +V+ +F
Sbjct: 126 RSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVF 177
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 186 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSA 221
+L+GNK D++ RQV+ EG A +F E SA
Sbjct: 131 LLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSA 166
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 224 GYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK-WID 277
G+N+K V +L +WD GQ + R SY ++ + + V D + F +T + +
Sbjct: 50 GFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTE 109
Query: 278 DVRTERGSDVIIMLVGNKTDL 298
+ E+ S V +++ NK DL
Sbjct: 110 LLEEEKLSCVPVLIFANKQDL 130
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 32 RFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91
R + DN GKT+L+ + + + T G + S ++ + +L +WD
Sbjct: 19 RILLLGLDNA------GKTTLLKQLASEDISHI-TPTQGFNIKS----VQSQGFKLNVWD 67
Query: 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
GQ + R SY ++ + + V D + F +T +
Sbjct: 68 IGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQ 105
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 224 GYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK-WID 277
G+N+K V +L +WD GQ + R SY ++ + + V D + F +T + +
Sbjct: 49 GFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTE 108
Query: 278 DVRTERGSDVIIMLVGNKTDL 298
+ E+ S V +++ NK DL
Sbjct: 109 LLEEEKLSCVPVLIFANKQDL 129
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 32 RFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91
R + DN GKT+L+ + + + T G + S ++ + +L +WD
Sbjct: 18 RILLLGLDNA------GKTTLLKQLASEDISHI-TPTQGFNIKS----VQSQGFKLNVWD 66
Query: 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
GQ + R SY ++ + + V D + F +T +
Sbjct: 67 IGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQ 104
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 32 RFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91
R + DN GKT+++ +F + D T T+G + KT LE R +L +WD
Sbjct: 18 RLLMLGLDNA------GKTTILKKFNGEDID-TISPTLGFNI--KT--LEHRGFKLNIWD 66
Query: 92 TAGQERFRSLIPSYIRDSTVAVVVYD 117
GQ+ RS +Y + + V D
Sbjct: 67 VGGQKSLRSYWRNYFESTDGLIWVVD 92
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 220 SAKAGYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 274
S G+N+K + +L +WD GQ+ RS +Y + + V D + +
Sbjct: 45 SPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQR 104
Query: 275 WIDDVRT-ERGSDVIIMLVGNKTDL 298
+ + ER + +++ NK DL
Sbjct: 105 ELQSLLVEERLAGATLLIFANKQDL 129
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 32 RFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91
R + DN GKT+++ +F + D T T+G + KT LE R +L +WD
Sbjct: 20 RLLMLGLDNA------GKTTILKKFNGEDVD-TISPTLGFNI--KT--LEHRGFKLNIWD 68
Query: 92 TAGQERFRSLIPSYIRDSTVAVVVYD 117
GQ+ RS +Y + + V D
Sbjct: 69 VGGQKSLRSYWRNYFESTDGLIWVVD 94
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 220 SAKAGYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 274
S G+N+K + +L +WD GQ+ RS +Y + + V D + +
Sbjct: 47 SPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQR 106
Query: 275 WIDDVRT-ERGSDVIIMLVGNKTDL 298
+ + ER + +++ NK DL
Sbjct: 107 ELQSLLVEERLAGATLLIFANKQDL 131
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 32 RFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91
R + DN GKT+++ +F + D T T+G + KT LE R +L +WD
Sbjct: 20 RLLMLGLDNA------GKTTILKKFNGEDVD-TISPTLGFNI--KT--LEHRGFKLNIWD 68
Query: 92 TAGQERFRSLIPSYIRDSTVAVVVYD 117
GQ+ RS +Y + + V D
Sbjct: 69 VGGQKSLRSYWRNYFESTDGLIWVVD 94
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 220 SAKAGYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 274
S G+N+K + +L +WD GQ+ RS +Y + + V D + +
Sbjct: 47 SPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQR 106
Query: 275 WIDDVRT-ERGSDVIIMLVGNKTDL 298
+ + ER + +++ NK DL
Sbjct: 107 ELQSLLVEERLAGATLLIFANKQDL 131
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
GKT+++ +F + D T T+G + KT LE R +L +WD GQ+ RS +Y
Sbjct: 29 AGKTTILKKFNGEDVD-TISPTLGFNI--KT--LEHRGFKLNIWDVGGQKSLRSYWRNYF 83
Query: 107 RDSTVAVVVYD 117
+ + V D
Sbjct: 84 ESTDGLIWVVD 94
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 220 SAKAGYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 274
S G+N+K + +L +WD GQ+ RS +Y + + V D + +
Sbjct: 47 SPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRXQDCQR 106
Query: 275 WIDDVRT-ERGSDVIIMLVGNKTDL 298
+ + ER + +++ NK DL
Sbjct: 107 ELQSLLVEERLAGATLLIFANKQDL 131
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 19/127 (14%)
Query: 180 GSDVIIMLVG--NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV-----RL 232
GS+V I+L+G N + +Q+++E+ + G+N+K V +L
Sbjct: 2 GSEVRILLLGLDNAGKTTLLKQLASED-----------ISHITPTQGFNIKSVQSQGFKL 50
Query: 233 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK-WIDDVRTERGSDVIIML 291
+WD G + R SY ++ + + V D + F +T + + + E+ S V +++
Sbjct: 51 NVWDIGGLRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLI 110
Query: 292 VGNKTDL 298
NK DL
Sbjct: 111 FANKQDL 117
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Query: 32 RFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91
R + DN GKT+L+ + + + T G + S ++ + +L +WD
Sbjct: 6 RILLLGLDNA------GKTTLLKQLASEDISHI-TPTQGFNIKS----VQSQGFKLNVWD 54
Query: 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
G + R SY ++ + + V D + F +T +
Sbjct: 55 IGGLRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQ 92
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 16/95 (16%)
Query: 217 IETSAKAGYNV-----KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYD------ITN 265
I T G+NV K + +WD GQ+R RSL Y R++ + V D I
Sbjct: 43 ITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGE 102
Query: 266 ANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 300
A Q D++R + + ++ NK DL +
Sbjct: 103 AREVMQRMLNEDELR-----NAVWLVFANKQDLPE 132
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKT+++ + T TIG + + ++ + + +WD GQ+R RSL Y R
Sbjct: 29 GKTTVLYKLKLGEVITTI-PTIGFNVET----VQYKNISFTVWDVGGQDRIRSLWRHYYR 83
Query: 108 DSTVAVVVYD 117
++ + V D
Sbjct: 84 NTEGVIFVID 93
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 216 FIETSAKAGYNV-----KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 270
+ T G+NV K + +WD GQ++ R L Y +++ + V D +
Sbjct: 54 IVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQ 113
Query: 271 QTSKWIDDVRTE-RGSDVIIMLVGNKTDLSDKRQVS 305
+++ + + E D ++++ NK D+ + VS
Sbjct: 114 ESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVS 149
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 217 IETSAKAGYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 265
+ TS G NV+++ R +WD GQE RS +Y ++ +VV D T+
Sbjct: 48 VHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD 101
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKT+++ +F + +T TIG S + R +WD GQE RS +Y
Sbjct: 34 GKTTILYQFSMNEVVHT-SPTIG----SNVEEIVINNTRFLMWDIGGQESLRSSWNTYYT 88
Query: 108 DSTVAVVVYDITN 120
++ +VV D T+
Sbjct: 89 NTEFVIVVVDSTD 101
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 217 IETSAKAGYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 265
+ TS G NV+++ R +WD GQE RS +Y ++ +VV D T+
Sbjct: 47 VHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD 100
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKT+++ +F + +T TIG S + R +WD GQE RS +Y
Sbjct: 33 GKTTILYQFSMNEVVHT-SPTIG----SNVEEIVINNTRFLMWDIGGQESLRSSWNTYYT 87
Query: 108 DSTVAVVVYDITN 120
++ +VV D T+
Sbjct: 88 NTEFVIVVVDSTD 100
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 217 IETSAKAGYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 265
+ TS G NV+++ R +WD GQE RS +Y ++ +VV D T+
Sbjct: 42 VHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD 95
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKT+++ +F + +T TIG S + R +WD GQE RS +Y
Sbjct: 28 GKTTILYQFSMNEVVHT-SPTIG----SNVEEIVINNTRFLMWDIGGQESLRSSWNTYYT 82
Query: 108 DSTVAVVVYDITN 120
++ +VV D T+
Sbjct: 83 NTEFVIVVVDSTD 95
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 217 IETSAKAGYNV-----KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYD 262
I T G+NV K + +WD GQ+R RSL Y R++ + V D
Sbjct: 43 ITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVD 93
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKT+++ + T TIG + + ++ + + +WD GQ+R RSL Y R
Sbjct: 29 GKTTVLYKLKLGEVITTI-PTIGFNVET----VQYKNISFTVWDVGGQDRIRSLWRHYYR 83
Query: 108 DSTVAVVVYD 117
++ + V D
Sbjct: 84 NTEGVIFVVD 93
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 217 IETSAKAGYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 265
+ TS G NV+++ R +WD GQE RS +Y ++ +VV D T+
Sbjct: 42 VHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD 95
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKT+++ +F + +T TIG S + R +WD GQE RS +Y
Sbjct: 28 GKTTILYQFSMNEVVHT-SPTIG----SNVEEIVINNTRFLMWDIGGQESLRSSWNTYYT 82
Query: 108 DSTVAVVVYDITN 120
++ +VV D T+
Sbjct: 83 NTEFVIVVVDSTD 95
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 217 IETSAKAGYNV-----KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYD 262
I T G+NV K + +WD GQ+R RSL Y R++ + V D
Sbjct: 26 ITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVD 76
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKT+++ + T TIG + + ++ + + +WD GQ+R RSL Y R
Sbjct: 12 GKTTVLYKLKLGEVITTI-PTIGFNVET----VQYKNISFTVWDVGGQDRIRSLWRHYYR 66
Query: 108 DSTVAVVVYD 117
++ + V D
Sbjct: 67 NTEGVIFVVD 76
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 20/97 (20%)
Query: 217 IETSAKAGYNVKQVRLQ-----LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ T G+NV+ V + +WD GQ++ R L Y ++ + V D +
Sbjct: 43 VTTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRER--- 99
Query: 272 TSKWIDDVR--------TERGSDVIIMLVGNKTDLSD 300
IDD R E D II++ NK DL +
Sbjct: 100 ----IDDAREELHRMINEEELKDAIILVFANKQDLPN 132
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 216 FIETSAKAGYNV-----KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 270
+ T G+NV K + +WD GQ++ R L Y +++ + V D + +
Sbjct: 42 IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIG 101
Query: 271 QTSKWIDDVRTE-RGSDVIIMLVGNKTDLSDKRQVS 305
+ + + + E + I+++ NK DL +S
Sbjct: 102 EAREELMKMLNEDEMRNAILLVFANKHDLPQAMSIS 137
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKTS++ + T TIG + + +E + + +WD GQ++ R L Y +
Sbjct: 29 GKTSILYKLKLGEIVTTI-PTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYYQ 83
Query: 108 DSTVAVVVYD 117
++ + V D
Sbjct: 84 NTQAIIFVVD 93
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 9/121 (7%)
Query: 217 IETSAKAGYNV-----KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ T G+NV K + +WD GQ++ R L Y +++ + V D + ++
Sbjct: 43 VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNE 102
Query: 272 TSKWIDDVRTE-RGSDVIIMLVGNKTDLSDKR---QVSTEEGERKAKELNVMFIETSAKA 327
+ + + E D ++++ NK DL + +++ + G + N T A +
Sbjct: 103 AREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATS 162
Query: 328 G 328
G
Sbjct: 163 G 163
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKT+++ + T TIG + + +E + + +WD GQ++ R L Y +
Sbjct: 29 GKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQ 83
Query: 108 DSTVAVVVYD 117
++ + V D
Sbjct: 84 NTQGLIFVVD 93
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 9/122 (7%)
Query: 216 FIETSAKAGYNV-----KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 270
+ T G+NV K + +WD GQ++ R L Y +++ + V D + +
Sbjct: 25 IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVN 84
Query: 271 QTSKWIDDVRTE-RGSDVIIMLVGNKTDLSDKR---QVSTEEGERKAKELNVMFIETSAK 326
+ + + + E D ++++ NK DL + +++ + G + N T A
Sbjct: 85 EAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCAT 144
Query: 327 AG 328
+G
Sbjct: 145 SG 146
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKT+++ + T TIG + + +E + + +WD GQ++ R L Y +
Sbjct: 12 GKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQ 66
Query: 108 DSTVAVVVYD 117
++ + V D
Sbjct: 67 NTQGLIFVVD 76
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 9/121 (7%)
Query: 217 IETSAKAGYNV-----KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ T G+NV K + +WD GQ++ R L Y +++ + V D + ++
Sbjct: 42 VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNE 101
Query: 272 TSKWIDDVRTE-RGSDVIIMLVGNKTDLSDKR---QVSTEEGERKAKELNVMFIETSAKA 327
+ + + E D ++++ NK DL + +++ + G + N T A +
Sbjct: 102 AREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATS 161
Query: 328 G 328
G
Sbjct: 162 G 162
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKT+++ + T TIG + + +E + + +WD GQ++ R L Y +
Sbjct: 28 GKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQ 82
Query: 108 DSTVAVVVYD 117
++ + V D
Sbjct: 83 NTQGLIFVVD 92
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 71/159 (44%), Gaps = 28/159 (17%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFD----NTYQATIVGKTSLITRFMY 58
S G+ L++ K+ +G+ GKTSL+ + + ++FD T+ +V K + + +
Sbjct: 31 SKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLE 90
Query: 59 DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 118
+ D L + ++ WD GQE + ++ S+V +++ D
Sbjct: 91 ND-----------DELKECLF--------HFWDFGGQEIMHASHQFFMTRSSVYMLLLDS 131
Query: 119 -TNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTH 156
T++N + W+ + G +I+++ I+ N ++
Sbjct: 132 RTDSNKHY----WLRHIEKYGGKSPVIVVMNKIDENPSY 166
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 6/127 (4%)
Query: 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI-TNANSFHQTSKWIDDVRTERGS 285
+K+ WD GQE + ++ S+V +++ D T++N + W+ + G
Sbjct: 95 LKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHY----WLRHIEKYGGK 150
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
+I+++ NK D + + ++ + + F S K G V+ + + + +A+
Sbjct: 151 SPVIVVM-NKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHP 209
Query: 346 DSTENKP 352
DS P
Sbjct: 210 DSIYGTP 216
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 217 IETSAKAGYNV-----KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ T G+NV K + +WD GQ++ R L Y +++ + V D + ++
Sbjct: 191 VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNE 250
Query: 272 TSKWI------DDVRTERGSDVIIMLVGNKTDLSD 300
+ + D++R D ++++ NK DL +
Sbjct: 251 AREELMRMLAEDELR-----DAVLLVFANKQDLPN 280
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
GKT+++ + T TIG + + +E + + +WD GQ++ R L Y
Sbjct: 176 AGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYF 230
Query: 107 RDSTVAVVVYD 117
+++ + V D
Sbjct: 231 QNTQGLIFVVD 241
>pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
Length = 1151
Score = 31.2 bits (69), Expect = 0.85, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTY 65
D PL +LV G+ GKT + R + + DN Q ++ T+L+ + YD+F + +
Sbjct: 618 DMCQPLAMDRLV-CGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRF 676
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 29 LITRFMYDSFDNTYQATIV------GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED 82
LI ++ F N I+ GKT+++ +F+ + +T TIG S +
Sbjct: 3 LIFAKLWSLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHT-SPTIG----SNVEEIVV 57
Query: 83 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYD 117
+ +WD GQE RS +Y ++ ++V D
Sbjct: 58 KNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVD 92
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 217 IETSAKAGYNVKQVRLQ-----LWDTAGQERFRSLIPSYIRDSTVAVVVYD 262
+ TS G NV+++ ++ +WD GQE RS +Y ++ ++V D
Sbjct: 42 VHTSPTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVD 92
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 217 IETSAKAGYNV-----KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ T G+NV K + +WD GQ++ R L Y +++ + V D + + +
Sbjct: 46 VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVE 105
Query: 272 TSKWIDDVRTE-RGSDVIIMLVGNKTDLSD 300
+ + E D ++++ NK DL +
Sbjct: 106 ARDELHRMLNEDELRDAVLLVFANKQDLPN 135
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKT+++ + T TIG + + +E + + +WD GQ++ R L Y +
Sbjct: 32 GKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQ 86
Query: 108 DSTVAVVVYD 117
++ + V D
Sbjct: 87 NTQGLIFVVD 96
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 217 IETSAKAGYNVKQVR-----LQLWDTAGQERFRSLIPSYIRDSTVAVVVYD 262
I T G+NV+ V+ +WD GQ+R RSL Y ++ + V D
Sbjct: 43 ITTIPTIGFNVECVQYCNISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVD 93
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/108 (20%), Positives = 46/108 (42%), Gaps = 10/108 (9%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF----HQTSKWIDDVRTER 283
K + ++WD GQ R Y D+ + V D T+ + H+ +D+ +
Sbjct: 64 KNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRK 123
Query: 284 GSDVIIMLVGNKTDLSD---KRQVSTEEGERKAKELNVMFIETSAKAG 328
++++ NK DL D + +++ + G +++S+K G
Sbjct: 124 S---LLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTG 168
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKEL-------NVMFIETSAKAGYNVKQLFRRVAAA 341
I++ NK +L DK + E R+ KE N I SA G N+ L + +
Sbjct: 141 IIIAQNKIELVDKEKAL--ENYRQIKEFIKGTVAENAPIIPISALHGANIDVLVKAIEEF 198
Query: 342 LPGMDSTENKPPE 354
+P NKPP+
Sbjct: 199 IPTPKRDSNKPPK 211
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 217 IETSAKAGYNV-----KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH- 270
+ T G+NV K ++ Q+WD GQ R Y ++ + V D + +
Sbjct: 28 VTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGI 87
Query: 271 QTSKWIDDVRTERGSDVIIMLVGNKTDL 298
S+ + + E I+++ NK D+
Sbjct: 88 SKSELVAMLEEEELRKAILVVFANKQDM 115
>pdb|2AXV|A Chain A, Structure Of Prgx Y153c Mutant
pdb|2AXV|B Chain B, Structure Of Prgx Y153c Mutant
pdb|2AXV|C Chain C, Structure Of Prgx Y153c Mutant
pdb|2AXV|D Chain D, Structure Of Prgx Y153c Mutant
Length = 317
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 195 SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERF 243
+D R +S EE + ++ L V F E +AG N K V + G+E+
Sbjct: 37 ADSRPISVEELSKFSERLGVNFFEILNRAGMNTKSV-----NETGKEKL 80
>pdb|2GRM|A Chain A, Crystal Structure Of PrgxICF10 COMPLEX
pdb|2GRM|B Chain B, Crystal Structure Of PrgxICF10 COMPLEX
pdb|2GRM|C Chain C, Crystal Structure Of PrgxICF10 COMPLEX
Length = 317
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 195 SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERF 243
+D R +S EE + ++ L V F E +AG N K V + G+E+
Sbjct: 37 ADSRPISVEELSKFSERLGVNFFEILNRAGMNTKSV-----NETGKEKL 80
>pdb|2AW6|A Chain A, Structure Of A Bacterial Peptide PheromoneRECEPTOR COMPLEX
And Its Mechanism Of Gene Regulation
pdb|2AW6|B Chain B, Structure Of A Bacterial Peptide PheromoneRECEPTOR COMPLEX
And Its Mechanism Of Gene Regulation
pdb|2GRL|A Chain A, Crystal Structure Of DctICF10 COMPLEX
pdb|2GRL|B Chain B, Crystal Structure Of DctICF10 COMPLEX
pdb|2GRL|C Chain C, Crystal Structure Of DctICF10 COMPLEX
pdb|2GRL|D Chain D, Crystal Structure Of DctICF10 COMPLEX
Length = 317
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 195 SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERF 243
+D R +S EE + ++ L V F E +AG N K V + G+E+
Sbjct: 37 ADSRPISVEELSKFSERLGVNFFEILNRAGMNTKSV-----NETGKEKL 80
>pdb|2AXU|A Chain A, Structure Of Prgx
pdb|2AXU|B Chain B, Structure Of Prgx
pdb|2AXU|C Chain C, Structure Of Prgx
pdb|2AXU|D Chain D, Structure Of Prgx
pdb|2AXU|E Chain E, Structure Of Prgx
pdb|2AXU|F Chain F, Structure Of Prgx
pdb|2AXU|G Chain G, Structure Of Prgx
pdb|2AXU|H Chain H, Structure Of Prgx
pdb|2AXU|I Chain I, Structure Of Prgx
pdb|2AXU|J Chain J, Structure Of Prgx
pdb|2AXU|K Chain K, Structure Of Prgx
pdb|2AXU|L Chain L, Structure Of Prgx
Length = 317
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 195 SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERF 243
+D R +S EE + ++ L V F E +AG N K V + G+E+
Sbjct: 37 ADSRPISVEELSKFSERLGVNFFEILNRAGXNTKSV-----NETGKEKL 80
>pdb|2AWI|A Chain A, Structure Of Prgx Y153c Mutant
pdb|2AWI|B Chain B, Structure Of Prgx Y153c Mutant
pdb|2AWI|C Chain C, Structure Of Prgx Y153c Mutant
pdb|2AWI|D Chain D, Structure Of Prgx Y153c Mutant
pdb|2AWI|E Chain E, Structure Of Prgx Y153c Mutant
pdb|2AWI|F Chain F, Structure Of Prgx Y153c Mutant
pdb|2AWI|G Chain G, Structure Of Prgx Y153c Mutant
pdb|2AWI|H Chain H, Structure Of Prgx Y153c Mutant
pdb|2AWI|I Chain I, Structure Of Prgx Y153c Mutant
pdb|2AWI|J Chain J, Structure Of Prgx Y153c Mutant
pdb|2AWI|K Chain K, Structure Of Prgx Y153c Mutant
pdb|2AWI|L Chain L, Structure Of Prgx Y153c Mutant
Length = 317
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 195 SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERF 243
+D R +S EE + ++ L V F E +AG N K V + G+E+
Sbjct: 37 ADSRPISVEELSKFSERLGVNFFEILNRAGXNTKSV-----NETGKEKL 80
>pdb|2AXZ|A Chain A, Crystal Structure Of PrgxCCF10 COMPLEX
pdb|2AXZ|B Chain B, Crystal Structure Of PrgxCCF10 COMPLEX
pdb|2AXZ|C Chain C, Crystal Structure Of PrgxCCF10 COMPLEX
pdb|2AXZ|D Chain D, Crystal Structure Of PrgxCCF10 COMPLEX
Length = 317
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 195 SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERF 243
+D R +S EE + ++ L V F E +AG N K V + G+E+
Sbjct: 37 ADSRPISVEELSKFSERLGVNFFEILNRAGXNTKSV-----NETGKEKL 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,788,965
Number of Sequences: 62578
Number of extensions: 372424
Number of successful extensions: 2327
Number of sequences better than 100.0: 344
Number of HSP's better than 100.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 944
Number of HSP's gapped (non-prelim): 1069
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)