BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15725
(355 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RAV6|RAB6A_PONAB Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6A PE=2 SV=3
Length = 208
Score = 296 bits (758), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 158/230 (68%), Positives = 162/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 240 bits (612), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 115/128 (89%), Positives = 122/128 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 180 TQDRSRED 187
>sp|P20340|RAB6A_HUMAN Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3
Length = 208
Score = 296 bits (758), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 158/230 (68%), Positives = 162/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 240 bits (612), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 115/128 (89%), Positives = 122/128 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 180 TQDRSRED 187
>sp|Q9WVB1|RAB6A_RAT Ras-related protein Rab-6A OS=Rattus norvegicus GN=Rab6a PE=2 SV=2
Length = 208
Score = 296 bits (757), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 158/230 (68%), Positives = 162/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 239 bits (611), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 115/128 (89%), Positives = 122/128 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 180 TQDRSRED 187
>sp|P35279|RAB6A_MOUSE Ras-related protein Rab-6A OS=Mus musculus GN=Rab6a PE=1 SV=4
Length = 208
Score = 296 bits (757), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 158/230 (68%), Positives = 162/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 239 bits (611), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 115/128 (89%), Positives = 122/128 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 180 TQDRSRED 187
>sp|Q1KME6|RAB6A_CHICK Ras-related protein Rab-6A OS=Gallus gallus GN=RAB6A PE=2 SV=3
Length = 208
Score = 293 bits (749), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 155/230 (67%), Positives = 160/230 (69%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVIIML
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166
Score = 237 bits (605), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 113/128 (88%), Positives = 120/128 (93%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPED 355
T++K ED
Sbjct: 180 TQDKSRED 187
>sp|Q22782|RAB6B_CAEEL Ras-related protein Rab-6.2 OS=Caenorhabditis elegans GN=rab-6.2
PE=2 SV=1
Length = 205
Score = 292 bits (747), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 161/251 (64%), Positives = 168/251 (66%), Gaps = 73/251 (29%)
Query: 6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTY 65
DFGNPL+KFKLVFLGEQSVGKTSL ITRFMYDSFDNTY
Sbjct: 3 DFGNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDNTY 39
Query: 66 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 125
QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN+NSFH
Sbjct: 40 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNSNSFH 99
Query: 126 QTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVII 185
QTSKWIDDVRTERGSDVIIML
Sbjct: 100 QTSKWIDDVRTERGSDVIIML--------------------------------------- 120
Query: 186 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRS 245
VGNKTDLSDKRQV+T+EGERKAKELNVMFIETSAKAGYNVKQ+ R
Sbjct: 121 --VGNKTDLSDKRQVTTDEGERKAKELNVMFIETSAKAGYNVKQLF---------RRIAG 169
Query: 246 LIPSYIRDSTV 256
+P I+D V
Sbjct: 170 ALPGIIKDDPV 180
Score = 232 bits (591), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 114/129 (88%), Positives = 120/129 (93%), Gaps = 5/129 (3%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN+NSFHQTSKWIDDVRTERGSDV
Sbjct: 57 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNSNSFHQTSKWIDDVRTERGSDV 116
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM-- 345
IIMLVGNKTDLSDKRQV+T+EGERKAKELNVMFIETSAKAGYNVKQLFRR+A ALPG+
Sbjct: 117 IIMLVGNKTDLSDKRQVTTDEGERKAKELNVMFIETSAKAGYNVKQLFRRIAGALPGIIK 176
Query: 346 -DSTENKPP 353
D E PP
Sbjct: 177 DDPVE--PP 183
>sp|P61294|RAB6B_MOUSE Ras-related protein Rab-6B OS=Mus musculus GN=Rab6b PE=1 SV=1
Length = 208
Score = 288 bits (737), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 153/230 (66%), Positives = 161/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 98 LNSFQQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQL 166
Score = 226 bits (576), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 107/127 (84%), Positives = 118/127 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQLFRRVA+ALPGM++
Sbjct: 120 IIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMEN 179
Query: 348 TENKPPE 354
+ K E
Sbjct: 180 VQEKSKE 186
>sp|Q9NRW1|RAB6B_HUMAN Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6B PE=1 SV=1
Length = 208
Score = 288 bits (737), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 153/230 (66%), Positives = 161/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 98 LNSFQQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQL 166
Score = 226 bits (576), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 107/127 (84%), Positives = 118/127 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQLFRRVA+ALPGM++
Sbjct: 120 IIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMEN 179
Query: 348 TENKPPE 354
+ K E
Sbjct: 180 VQEKSKE 186
>sp|A6QR46|RAB6B_BOVIN Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B PE=2 SV=1
Length = 208
Score = 288 bits (737), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 153/230 (66%), Positives = 161/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSL ITRFMYDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QTSKWIDDVRTERGSDVIIML
Sbjct: 98 LNSFQQTSKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQL 166
Score = 226 bits (576), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 107/127 (84%), Positives = 118/127 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQLFRRVA+ALPGM++
Sbjct: 120 IIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMEN 179
Query: 348 TENKPPE 354
+ K E
Sbjct: 180 VQEKSKE 186
>sp|P34213|RAB6A_CAEEL Ras-related protein Rab-6.1 OS=Caenorhabditis elegans GN=rab-6.1
PE=2 SV=1
Length = 205
Score = 271 bits (692), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 144/227 (63%), Positives = 157/227 (69%), Gaps = 65/227 (28%)
Query: 5 GDF-GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
DF N L+KFKLVFLGEQSVGKTS+I TRFMYDSFDN
Sbjct: 2 ADFTNNALKKFKLVFLGEQSVGKTSII-----------------------TRFMYDSFDN 38
Query: 64 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
TYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITNANS
Sbjct: 39 TYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNANS 98
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
FHQT+KW+DDVR ERG DVII+L
Sbjct: 99 FHQTTKWVDDVRNERGCDVIIVL------------------------------------- 121
Query: 184 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL+DKRQVSTE+GE+KA++LNVMFIETSAKAGYNVKQ+
Sbjct: 122 ----VGNKTDLADKRQVSTEDGEKKARDLNVMFIETSAKAGYNVKQL 164
Score = 221 bits (563), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 104/137 (75%), Positives = 119/137 (86%), Gaps = 9/137 (6%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ +RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITNANSFHQT+KW+DDVR ERG DV
Sbjct: 58 RTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNANSFHQTTKWVDDVRNERGCDV 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKRQVSTE+GE+KA++LNVMFIETSAKAGYNVKQLFR++A ALPG+
Sbjct: 118 IIVLVGNKTDLADKRQVSTEDGEKKARDLNVMFIETSAKAGYNVKQLFRKIATALPGIVQ 177
Query: 348 TENK---------PPED 355
E PP+D
Sbjct: 178 EETPEQPNIVIMNPPKD 194
>sp|Q9H0N0|RAB6C_HUMAN Ras-related protein Rab-6C OS=Homo sapiens GN=RAB6C PE=1 SV=2
Length = 254
Score = 261 bits (668), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 142/230 (61%), Positives = 149/230 (64%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSV KTSLIT RF YDS
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVAKTSLIT-----------------------RFRYDS 37
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
FDNTYQA IGIDFLSKTMYLED T+ L+LWDTAGQER RSLIP YIRDS AVVVYDITN
Sbjct: 38 FDNTYQAIIGIDFLSKTMYLEDGTIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERGSDVII L
Sbjct: 98 VNSFQQTTKWIDDVRTERGSDVIITL---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGN+TDL+DKRQVS EEGERKAK LNV FIET AKAGYNVKQ+
Sbjct: 124 -------VGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKAGYNVKQL 166
Score = 214 bits (544), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 103/126 (81%), Positives = 111/126 (88%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
+ L+LWDTAGQER RSLIP YIRDS AVVVYDITN NSF QT+KWIDDVRTERGSDVII
Sbjct: 62 IGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVII 121
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
LVGN+TDL+DKRQVS EEGERKAK LNV FIET AKAGYNVKQLFRRVAAALPGM+ST+
Sbjct: 122 TLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKAGYNVKQLFRRVAAALPGMESTQ 181
Query: 350 NKPPED 355
+ ED
Sbjct: 182 DGSRED 187
>sp|P17608|RYH1_SCHPO GTP-binding protein ryh1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ryh1 PE=1 SV=1
Length = 201
Score = 248 bits (634), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 134/225 (59%), Positives = 147/225 (65%), Gaps = 64/225 (28%)
Query: 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
S ++ LRKFKLVFLGEQSVGKTSL ITRFMYD FDN
Sbjct: 2 SENYSFSLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDQFDN 38
Query: 64 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VA++VYDITN NS
Sbjct: 39 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNS 98
Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
F T KWI+DVR ERG DVII+L
Sbjct: 99 FVNTEKWIEDVRAERGDDVIIVL------------------------------------- 121
Query: 184 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
VGNKTDL+DKRQV+ EEGE+KAKEL +M +ETSAKAG+NVK
Sbjct: 122 ----VGNKTDLADKRQVTQEEGEKKAKELKIMHMETSAKAGHNVK 162
Score = 200 bits (509), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 92/127 (72%), Positives = 110/127 (86%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VA++VYDITN NSF T KWI+DVR ERG DV
Sbjct: 58 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDV 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL+DKRQV+ EEGE+KAKEL +M +ETSAKAG+NVK LFR++A LPGM++
Sbjct: 118 IIVLVGNKTDLADKRQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKIAQMLPGMEN 177
Query: 348 TENKPPE 354
E + +
Sbjct: 178 VETQSTQ 184
>sp|O80501|RAH1B_ARATH Ras-related protein RABH1b OS=Arabidopsis thaliana GN=RABH1B PE=1
SV=1
Length = 208
Score = 242 bits (618), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 129/222 (58%), Positives = 145/222 (65%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ L K+KLVFLG+QSVGKTS+I TRFMYD FDNTYQAT
Sbjct: 5 SALAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDNTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ + SF T+
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTT 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWID+VRTERGSDVI++L V
Sbjct: 102 KWIDEVRTERGSDVIVVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQVS EE E KA+ELNVMFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVDKRQVSIEEAEAKARELNVMFIETSAKAGFNIKAL 162
Score = 206 bits (525), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 95/128 (74%), Positives = 112/128 (87%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ + SF T+KWID+VRTERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
I++LVGNKTDL DKRQVS EE E KA+ELNVMFIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 116 IVVLVGNKTDLVDKRQVSIEEAEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMET 175
Query: 348 TENKPPED 355
+ ED
Sbjct: 176 LSSTKQED 183
>sp|Q9LFT9|RAH1E_ARATH Ras-related protein RABH1e OS=Arabidopsis thaliana GN=RABH1E PE=2
SV=1
Length = 207
Score = 238 bits (608), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 128/222 (57%), Positives = 144/222 (64%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+PL K+KLVFLG+QSVGKTS+I TRFMYD FD TYQAT
Sbjct: 5 SPLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDTTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ N SF TS
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTS 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI+DVRTERGSDVII+L V
Sbjct: 102 KWIEDVRTERGSDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL DKRQVS EEG+ KA++ V+FIETSAKAG+N+K +
Sbjct: 121 GNKTDLVDKRQVSIEEGDNKARDYGVIFIETSAKAGFNIKPL 162
Score = 202 bits (513), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 111/128 (86%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAV+VYD+ N SF TSKWI+DVRTERGSDV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSKWIEDVRTERGSDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL DKRQVS EEG+ KA++ V+FIETSAKAG+N+K LFR++AAALPGM++
Sbjct: 116 IIVLVGNKTDLVDKRQVSIEEGDNKARDYGVIFIETSAKAGFNIKPLFRKIAAALPGMET 175
Query: 348 TENKPPED 355
+ ED
Sbjct: 176 LSSTKQED 183
>sp|Q55FK2|RAB6_DICDI Ras-related protein Rab-6 OS=Dictyostelium discoideum GN=rab6 PE=3
SV=1
Length = 208
Score = 234 bits (596), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 127/220 (57%), Positives = 143/220 (65%), Gaps = 64/220 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K+KLVFLG+QSVGKTS+I TRFMYD+FD TYQATIG
Sbjct: 4 LSKYKLVFLGDQSVGKTSII-----------------------TRFMYDTFDITYQATIG 40
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VA+VVYDITN SF T KW
Sbjct: 41 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDITNKVSFTNTIKW 100
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
I+DVR ERG++V+IML VGN
Sbjct: 101 IEDVRNERGNNVVIML-----------------------------------------VGN 119
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
KTDL+DKRQVS EEGE KAKE ++MF ETSAKAG+N+K +
Sbjct: 120 KTDLADKRQVSIEEGEAKAKEYDIMFTETSAKAGFNIKAL 159
Score = 200 bits (508), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 93/120 (77%), Positives = 108/120 (90%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VA+VVYDITN SF T KWI+DVR ERG++V
Sbjct: 53 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDITNKVSFTNTIKWIEDVRNERGNNV 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+IMLVGNKTDL+DKRQVS EEGE KAKE ++MF ETSAKAG+N+K LFR+VA+ALPG+DS
Sbjct: 113 VIMLVGNKTDLADKRQVSIEEGEAKAKEYDIMFTETSAKAGFNIKALFRKVASALPGIDS 172
>sp|Q9SID8|RAH1D_ARATH Ras-related protein RABH1d OS=Arabidopsis thaliana GN=RABH1D PE=3
SV=1
Length = 207
Score = 229 bits (585), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 125/222 (56%), Positives = 140/222 (63%), Gaps = 64/222 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+PL K+KLVFLG+QSVGKTS+I TRFMYD FD TYQAT
Sbjct: 5 SPLAKYKLVFLGDQSVGKTSII-----------------------TRFMYDKFDTTYQAT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD+ N SF TS
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVANRLSFLNTS 101
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
KWI++VR ER DVII+L V
Sbjct: 102 KWIEEVRNERAGDVIIVL-----------------------------------------V 120
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNKTDL +KRQVS EEG+ K +E VMFIETSAKAG+N+K +
Sbjct: 121 GNKTDLVEKRQVSIEEGDSKGREYGVMFIETSAKAGFNIKPL 162
Score = 196 bits (498), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 107/128 (83%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYD+ N SF TSKWI++VR ER DV
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVANRLSFLNTSKWIEEVRNERAGDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
II+LVGNKTDL +KRQVS EEG+ K +E VMFIETSAKAG+N+K LFR++AAALPGM+S
Sbjct: 116 IIVLVGNKTDLVEKRQVSIEEGDSKGREYGVMFIETSAKAGFNIKPLFRKIAAALPGMES 175
Query: 348 TENKPPED 355
N ED
Sbjct: 176 YSNTKNED 183
>sp|Q9SMR4|RAH1C_ARATH Ras-related protein RABH1c OS=Arabidopsis thaliana GN=RABH1C PE=1
SV=1
Length = 214
Score = 221 bits (563), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 123/223 (55%), Positives = 138/223 (61%), Gaps = 65/223 (29%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+PL KFKLVFLG+QSVGKTS+I TRFMYD FD TYQ T
Sbjct: 5 SPLAKFKLVFLGDQSVGKTSII-----------------------TRFMYDKFDTTYQPT 41
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS+VA+VVYD++N +F TS
Sbjct: 42 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTS 101
Query: 129 KWIDDVRTERG-SDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
KWI+DV ERG S+VII+L
Sbjct: 102 KWIEDVHRERGQSNVIIVL----------------------------------------- 120
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNKTDL +KRQVS EGE K KE VMFIETSAK +N+K +
Sbjct: 121 VGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIKAL 163
Score = 184 bits (466), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 88/121 (72%), Positives = 103/121 (85%), Gaps = 1/121 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SD 286
+ VRLQLWDTAGQERFRSLIPSYIRDS+VA+VVYD++N +F TSKWI+DV ERG S+
Sbjct: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQSN 115
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
VII+LVGNKTDL +KRQVS EGE K KE VMFIETSAK +N+K LFR++AAALPG+D
Sbjct: 116 VIIVLVGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIKALFRKIAAALPGVD 175
Query: 347 S 347
S
Sbjct: 176 S 176
>sp|Q99260|YPT6_YEAST GTP-binding protein YPT6 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT6 PE=1 SV=1
Length = 215
Score = 219 bits (559), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 127/275 (46%), Positives = 154/275 (56%), Gaps = 76/275 (27%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G L K+K+VFLGEQ VGKTSL ITRFMYD+FD+ YQA
Sbjct: 5 GKSLTKYKIVFLGEQGVGKTSL-----------------------ITRFMYDTFDDHYQA 41
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIGIDFLSKTMYL+D+T+RLQLWDTAGQERFRSLIPSYIRDS VA++VYDIT SF
Sbjct: 42 TIGIDFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSYIRDSRVAIIVYDITKRKSFEYI 101
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
KWI+DV+ ERG + +VI+ +
Sbjct: 102 DKWIEDVKNERGDE----------------------------------------NVILCI 121
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQVRLQLWDTAGQERFRSL 246
VGNK+DLSD+RQ+STEEGE+KAK L +F+ETS KAGYNVK + F+ +
Sbjct: 122 VGNKSDLSDERQISTEEGEKKAKLLGAKIFMETSTKAGYNVKAL------------FKKI 169
Query: 247 IPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT 281
S D NANS +Q + D+ T
Sbjct: 170 AKSLPEFQNSESTPLDSENANSANQNKPGVIDIST 204
Score = 173 bits (439), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/127 (64%), Positives = 103/127 (81%), Gaps = 2/127 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SD 286
K +RLQLWDTAGQERFRSLIPSYIRDS VA++VYDIT SF KWI+DV+ ERG +
Sbjct: 57 KTIRLQLWDTAGQERFRSLIPSYIRDSRVAIIVYDITKRKSFEYIDKWIEDVKNERGDEN 116
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPGM 345
VI+ +VGNK+DLSD+RQ+STEEGE+KAK L +F+ETS KAGYNVK LF+++A +LP
Sbjct: 117 VILCIVGNKSDLSDERQISTEEGEKKAKLLGAKIFMETSTKAGYNVKALFKKIAKSLPEF 176
Query: 346 DSTENKP 352
++E+ P
Sbjct: 177 QNSESTP 183
>sp|Q5JT25|RAB41_HUMAN Ras-related protein Rab-41 OS=Homo sapiens GN=RAB41 PE=2 SV=2
Length = 222
Score = 215 bits (548), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 116/220 (52%), Positives = 136/220 (61%), Gaps = 64/220 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K KL+FLGEQSVGKTS+I +RFMY+SF QAT+G
Sbjct: 29 LCKSKLLFLGEQSVGKTSII-----------------------SRFMYNSFGCACQATVG 65
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
IDFLSKTMYLED+ V+LQLWDTAGQERF SLIPSYIRDST+AVVVYDITN NSF +T KW
Sbjct: 66 IDFLSKTMYLEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSFKETDKW 125
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
++ VR ERG DV+IM L+GN
Sbjct: 126 VEHVRAERGDDVVIM-----------------------------------------LLGN 144
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
K DL +KRQV+ E+GE K++ LNVMFIETSAK GYNVK++
Sbjct: 145 KIDLDNKRQVTAEQGEEKSRNLNVMFIETSAKTGYNVKKL 184
Score = 190 bits (483), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 90/124 (72%), Positives = 104/124 (83%), Gaps = 3/124 (2%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+LQLWDTAGQERF SLIPSYIRDST+AVVVYDITN NSF +T KW++ VR ERG DV+I
Sbjct: 80 VQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSFKETDKWVEHVRAERGDDVVI 139
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
ML+GNK DL +KRQV+ E+GE K++ LNVMFIETSAK GYNVK+LFRRVA+AL ST
Sbjct: 140 MLLGNKIDLDNKRQVTAEQGEEKSRNLNVMFIETSAKTGYNVKKLFRRVASALL---STR 196
Query: 350 NKPP 353
PP
Sbjct: 197 TSPP 200
>sp|Q9LV79|RAH1A_ARATH Ras-related protein RABH1a OS=Arabidopsis thaliana GN=RABH1A PE=2
SV=1
Length = 206
Score = 204 bits (518), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/230 (49%), Positives = 136/230 (59%), Gaps = 67/230 (29%)
Query: 5 GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT 64
GD G + +KLVFLG+Q VGKTS+I T FMY FD +
Sbjct: 2 GDLG---KGYKLVFLGDQGVGKTSII-----------------------TCFMYGKFDTS 35
Query: 65 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 124
YQATIGIDFLSKT EDRT RLQLWDTAGQERF+SL+PSYIRDS+VAV+VYD+ + SF
Sbjct: 36 YQATIGIDFLSKTTRYEDRTFRLQLWDTAGQERFKSLVPSYIRDSSVAVIVYDVASKQSF 95
Query: 125 HQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVI 184
TSKWI++VR ERGS VII+L
Sbjct: 96 INTSKWIEEVRAERGSYVIIVL-------------------------------------- 117
Query: 185 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
VGNKTDL +KRQVS EEGE KA+E +F+ETSAKAG+N+K + ++
Sbjct: 118 ---VGNKTDLVNKRQVSIEEGENKAREFGALFMETSAKAGFNIKPLFCKI 164
Score = 175 bits (444), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 82/131 (62%), Positives = 103/131 (78%)
Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
Y + RLQLWDTAGQERF+SL+PSYIRDS+VAV+VYD+ + SF TSKWI++VR ERG
Sbjct: 51 YEDRTFRLQLWDTAGQERFKSLVPSYIRDSSVAVIVYDVASKQSFINTSKWIEEVRAERG 110
Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
S VII+LVGNKTDL +KRQVS EEGE KA+E +F+ETSAKAG+N+K LF ++ +AL G
Sbjct: 111 SYVIIVLVGNKTDLVNKRQVSIEEGENKAREFGALFMETSAKAGFNIKPLFCKITSALQG 170
Query: 345 MDSTENKPPED 355
++ ED
Sbjct: 171 NEAVSWTKQED 181
>sp|Q92930|RAB8B_HUMAN Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2
Length = 207
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+S
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHASS-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ N
Sbjct: 113 ---------------DVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSAN 157
Query: 227 VKQVRLQL 234
V++ L
Sbjct: 158 VEEAFFTL 165
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 77/112 (68%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ NV++ F +A
Sbjct: 115 ERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLA 166
>sp|P70550|RAB8B_RAT Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1
Length = 207
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+S
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHASS-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ N
Sbjct: 113 ---------------DVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTN 157
Query: 227 VKQVRLQL 234
V++ L
Sbjct: 158 VEEAFFTL 165
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 77/112 (68%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ NV++ F +A
Sbjct: 115 ERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLA 166
>sp|P61028|RAB8B_MOUSE Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1
Length = 207
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+S
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHASS-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ N
Sbjct: 113 ---------------DVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTN 157
Query: 227 VKQVRLQL 234
V++ L
Sbjct: 158 VEEAFFTL 165
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 77/112 (68%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ NV++ F +A
Sbjct: 115 ERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLA 166
>sp|Q5REC9|RAB8B_PONAB Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1
Length = 207
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+S
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHASS-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ N
Sbjct: 113 ---------------DVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTN 157
Query: 227 VKQVRLQL 234
V++ L
Sbjct: 158 VEEAFFTL 165
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 77/112 (68%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E GE+ A + + F+ETSAK+ NV++ F +A
Sbjct: 115 ERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLA 166
>sp|Q58DS9|RAB5C_BOVIN Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1
Length = 216
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 110/223 (49%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEYQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALAG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL+ KR V +E + A++ +++F+ETSAK NV ++
Sbjct: 134 --NKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEI 174
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 83/138 (60%), Gaps = 15/138 (10%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP------ 343
L GNK DL+ KR V +E + A++ +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQN 189
Query: 344 ---------GMDSTENKP 352
G+D EN P
Sbjct: 190 AAGAPGRNRGVDLQENNP 207
>sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1
Length = 216
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEYQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALAG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL+ KR V +E + A + +++F+ETSAK NV ++
Sbjct: 134 --NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEI 174
Score = 114 bits (286), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 82/138 (59%), Gaps = 15/138 (10%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP------ 343
L GNK DL+ KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQN 189
Query: 344 ---------GMDSTENKP 352
G+D EN P
Sbjct: 190 AAGAPSRNRGVDLQENSP 207
>sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2
Length = 216
Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEYQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALAG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL+ KR V +E + A + +++F+ETSAK NV ++
Sbjct: 134 --NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEI 174
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL+ KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLP 183
>sp|P22127|RAB10_DIPOM Ras-related protein Rab-10 OS=Diplobatis ommata PE=2 SV=1
Length = 200
Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 101/188 (53%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F+ T+ +TIGIDF KT+ L + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITNA SF SKW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNAKSFENISKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV ML+GNK D+ DKR V +GE+ A+E + F ETSAKA N
Sbjct: 113 --------------EDVERMLLGNKCDMEDKRVVLKSKGEQIAREHAIRFFETSAKANIN 158
Query: 227 VKQVRLQL 234
+++ L L
Sbjct: 159 IEKAFLTL 166
Score = 112 bits (279), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 81/127 (63%), Gaps = 2/127 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITNA SF SKW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
ML+GNK D+ DKR V +GE+ A+E + F ETSAKA N+++ F +A + +
Sbjct: 116 ERMLLGNKCDMEDKRVVLKSKGEQIAREHAIRFFETSAKANINIEKAFLTLAEDI--LQK 173
Query: 348 TENKPPE 354
T K P+
Sbjct: 174 TPVKEPD 180
>sp|Q5R5U1|RAB10_PONAB Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1
Length = 200
Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 101/188 (53%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F+ T+ +TIGIDF KT+ L+ + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF SKW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNGKSFENISKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV ML+GNK D+ DKR V +GE+ A+E + F ETSAKA N
Sbjct: 113 --------------EDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANIN 158
Query: 227 VKQVRLQL 234
+++ L L
Sbjct: 159 IEKAFLTL 166
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 74/112 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITN SF SKW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
ML+GNK D+ DKR V +GE+ A+E + F ETSAKA N+++ F +A
Sbjct: 116 ERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLA 167
>sp|P61027|RAB10_MOUSE Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1
Length = 200
Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 101/188 (53%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F+ T+ +TIGIDF KT+ L+ + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF SKW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNGKSFENISKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV ML+GNK D+ DKR V +GE+ A+E + F ETSAKA N
Sbjct: 113 --------------EDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANIN 158
Query: 227 VKQVRLQL 234
+++ L L
Sbjct: 159 IEKAFLTL 166
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 74/112 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITN SF SKW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
ML+GNK D+ DKR V +GE+ A+E + F ETSAKA N+++ F +A
Sbjct: 116 ERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLA 167
>sp|P61026|RAB10_HUMAN Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1
Length = 200
Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 101/188 (53%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F+ T+ +TIGIDF KT+ L+ + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF SKW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNGKSFENISKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV ML+GNK D+ DKR V +GE+ A+E + F ETSAKA N
Sbjct: 113 --------------EDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANIN 158
Query: 227 VKQVRLQL 234
+++ L L
Sbjct: 159 IEKAFLTL 166
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 74/112 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITN SF SKW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
ML+GNK D+ DKR V +GE+ A+E + F ETSAKA N+++ F +A
Sbjct: 116 ERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLA 167
>sp|Q2HJI8|RAB8B_BOVIN Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1
Length = 207
Score = 125 bits (314), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 102/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+S
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIKNWIRNIE------------------------EHASS-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+E SAK+ N
Sbjct: 113 ---------------DVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLEASAKSSMN 157
Query: 227 VKQVRLQL 234
V++ L
Sbjct: 158 VEEAFFTL 165
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 76/112 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D++DKRQVS E GE+ A + + F+E SAK+ NV++ F +A
Sbjct: 115 ERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLEASAKSSMNVEEAFFTLA 166
>sp|Q5R7L7|RAB5C_PONAB Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1
Length = 216
Score = 125 bits (314), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEYQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALAG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL+ KR V +E + A + +++F+ETSAK NV ++
Sbjct: 134 --NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEI 174
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 82/138 (59%), Gaps = 15/138 (10%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP------ 343
L GNK DL+ KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQN 189
Query: 344 ---------GMDSTENKP 352
G+D EN P
Sbjct: 190 ATGAPGRNRGVDLQENNP 207
>sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2
Length = 216
Score = 125 bits (314), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 16 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEYQES 52
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F +
Sbjct: 53 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA 112
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 113 KNWVKELQRQASPNIVIALAG--------------------------------------- 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL+ KR V +E + A + +++F+ETSAK NV ++
Sbjct: 134 --NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEI 174
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 82/138 (59%), Gaps = 15/138 (10%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP------ 343
L GNK DL+ KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQN 189
Query: 344 ---------GMDSTENKP 352
G+D EN P
Sbjct: 190 ATGAPGRNRGVDLQENNP 207
>sp|Q5ZIT5|RAB10_CHICK Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1
Length = 200
Score = 125 bits (314), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 101/188 (53%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F+ T+ +TIGID KT+ L+ + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCVLFRFSDDAFNTTFISTIGIDLKIKTVELQGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITNA SF SKW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNAKSFENISKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV ML+GNK D+ DKR V +GE+ A+E + F ETSAKA N
Sbjct: 113 --------------EDVERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANIN 158
Query: 227 VKQVRLQL 234
+++ L L
Sbjct: 159 IEKAFLTL 166
Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 75/112 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITNA SF SKW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
ML+GNK D+ DKR V +GE+ A+E + F ETSAKA N+++ F +A
Sbjct: 116 ERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANINIEKAFLTLA 167
>sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1
Length = 215
Score = 125 bits (313), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE + VGK+SL+ RF+ F ++
Sbjct: 15 GNKICQFKLVLLGE-----------------------SAVGKSSLVLRFVKGQFHEFQES 51
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 52 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 111
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 112 KNWVKELQRQASPNIVIALSG--------------------------------------- 132
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 133 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI 173
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 182
>sp|P61271|RAB5A_MACFA Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2
SV=1
Length = 215
Score = 125 bits (313), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 15 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 51
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 52 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 111
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 112 KNWVKELQRQASPNIVIALSG--------------------------------------- 132
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 133 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI 173
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 182
>sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2
Length = 215
Score = 125 bits (313), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 15 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 51
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 52 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 111
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 112 KNWVKELQRQASPNIVIALSG--------------------------------------- 132
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 133 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI 173
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 182
>sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1
Length = 215
Score = 125 bits (313), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 15 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 51
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 52 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 111
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 112 KNWVKELQRQASPNIVIALSG--------------------------------------- 132
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 133 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI 173
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 182
>sp|Q0IIG7|RAB5A_BOVIN Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1
Length = 215
Score = 124 bits (312), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 15 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 51
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 52 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 111
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 112 KNWVKELQRQASPNIVIALSG--------------------------------------- 132
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 133 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI 173
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 182
>sp|Q06AU6|RAB5A_PIG Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1
Length = 215
Score = 124 bits (312), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++
Sbjct: 15 GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 51
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
TIG FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF +
Sbjct: 52 TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 111
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ +++ + +++I L G
Sbjct: 112 KNWVKELQRQASPNIVIALSG--------------------------------------- 132
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 133 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI 173
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + +++I
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 182
>sp|Q4R5P1|RAB8A_MACFA Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2
SV=1
Length = 207
Score = 124 bits (312), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA++
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIE------------------------EHASA-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAKA N
Sbjct: 113 ---------------DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
V+ L
Sbjct: 158 VENAFFTL 165
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG-MD 346
M++GNK D++DKRQVS E GE+ A + + F+ETSAKA NV+ F +A + MD
Sbjct: 115 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD 174
Query: 347 ST-ENKPPE 354
E P+
Sbjct: 175 KKLEGNSPQ 183
>sp|P61006|RAB8A_HUMAN Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1
Length = 207
Score = 124 bits (312), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA++
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIE------------------------EHASA-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAKA N
Sbjct: 113 ---------------DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
V+ L
Sbjct: 158 VENAFFTL 165
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG-MD 346
M++GNK D++DKRQVS E GE+ A + + F+ETSAKA NV+ F +A + MD
Sbjct: 115 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD 174
Query: 347 ST-ENKPPE 354
E P+
Sbjct: 175 KKLEGNSPQ 183
>sp|P61007|RAB8A_CANFA Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1
Length = 207
Score = 124 bits (312), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA++
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIE------------------------EHASA-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAKA N
Sbjct: 113 ---------------DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
V+ L
Sbjct: 158 VENAFFTL 165
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG-MD 346
M++GNK D++DKRQVS E GE+ A + + F+ETSAKA NV+ F +A + MD
Sbjct: 115 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD 174
Query: 347 ST-ENKPPE 354
E P+
Sbjct: 175 KKLEGNSPQ 183
>sp|P35280|RAB8A_RAT Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2
Length = 207
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA++
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIE------------------------EHASA-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAKA N
Sbjct: 113 ---------------DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
V+ L
Sbjct: 158 VENAFFTL 165
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG-MD 346
M++GNK D++DKRQVS E GE+ A + + F+ETSAKA NV+ F +A + MD
Sbjct: 115 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD 174
Query: 347 ST-ENKPPE 354
E P+
Sbjct: 175 KKLEGNSPQ 183
>sp|P55258|RAB8A_MOUSE Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2
Length = 207
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA++
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIE------------------------EHASA-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAKA N
Sbjct: 113 ---------------DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
V+ L
Sbjct: 158 VENAFFTL 165
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG-MD 346
M++GNK D++DKRQVS E GE+ A + + F+ETSAKA NV+ F +A + MD
Sbjct: 115 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD 174
Query: 347 ST-ENKPPE 354
E P+
Sbjct: 175 KKLEGNSPQ 183
>sp|P22128|RAB8_DIPOM Ras-related protein Rab-8 OS=Diplobatis ommata PE=2 SV=1
Length = 210
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 102/188 (54%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF D+F+ T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + + VYDITN SF WI ++ SDV
Sbjct: 79 RGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDV------------------------ 114
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
ER M++GNK D+++KRQVS E GE+ A + + F+ETSAK+ N
Sbjct: 115 -----------ER------MILGNKCDMNEKRQVSKERGEKLAIDYGIKFLETSAKSSIN 157
Query: 227 VKQVRLQL 234
V++ + L
Sbjct: 158 VEEAFITL 165
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 76/112 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + + VYDITN SF WI ++ SDV
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
M++GNK D+++KRQVS E GE+ A + + F+ETSAK+ NV++ F +A
Sbjct: 115 ERMILGNKCDMNEKRQVSKERGEKLAIDYGIKFLETSAKSSINVEEAFITLA 166
>sp|A4FV54|RAB8A_BOVIN Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1
Length = 207
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 102/182 (56%), Gaps = 41/182 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA++
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIE------------------------EHASA-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV M++GNK D++DKRQVS E GE+ A + + F+ETSAKA N
Sbjct: 113 ---------------DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157
Query: 227 VK 228
V+
Sbjct: 158 VE 159
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG-MD 346
M++GNK D++DKRQVS E GE+ A + + F+ETSAKA NV+ F +A + MD
Sbjct: 115 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFYTLARDIKAKMD 174
Query: 347 ST-ENKPPE 354
E P+
Sbjct: 175 KKLEGNSPQ 183
>sp|P24409|RAB10_CANFA Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=1 SV=1
Length = 200
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 100/188 (53%), Gaps = 41/188 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F+ T+ +TIGIDF KT+ L+ + ++LQ+WDTAGQERF ++ SY
Sbjct: 20 VGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF SKW+ ++ HAN
Sbjct: 80 RGAMGIMLVYDITNGKSFENISKWLRNID------------------------EHAN--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV ML+GNK D+ DKR V +GE+ A+E + F ETSAK N
Sbjct: 113 --------------EDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKVNIN 158
Query: 227 VKQVRLQL 234
+++ L L
Sbjct: 159 IEKAFLTL 166
Score = 108 bits (269), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 73/112 (65%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERF ++ SY R + ++VYDITN SF SKW+ ++ DV
Sbjct: 56 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
ML+GNK D+ DKR V +GE+ A+E + F ETSAK N+++ F +A
Sbjct: 116 ERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKVNINIEKAFLTLA 167
>sp|P31582|RAF2A_ARATH Ras-related protein RABF2a OS=Arabidopsis thaliana GN=RABF2A PE=1
SV=1
Length = 200
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 96/184 (52%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
GK+SL+ RF+ D F ++TIG F S+T+ + D TV+ ++WDTAGQER+ SL P Y
Sbjct: 21 AGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 80
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + A++V+DITN SF + KW+ +++ + +++
Sbjct: 81 RGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMV----------------------- 117
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+ L GNK DL D R+VS EE E A+E ++ F+ETSAK N
Sbjct: 118 ------------------MALAGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATN 159
Query: 227 VKQV 230
VK +
Sbjct: 160 VKDI 163
Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 80/121 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
V+ ++WDTAGQER+ SL P Y R + A++V+DITN SF + KW+ +++ + ++++
Sbjct: 59 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVM 118
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
L GNK DL D R+VS EE E A+E ++ F+ETSAK NVK +F +A LP + E
Sbjct: 119 ALAGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLPRVQPAE 178
Query: 350 N 350
N
Sbjct: 179 N 179
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,761,961
Number of Sequences: 539616
Number of extensions: 4606753
Number of successful extensions: 18566
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 219
Number of HSP's that attempted gapping in prelim test: 14501
Number of HSP's gapped (non-prelim): 3515
length of query: 355
length of database: 191,569,459
effective HSP length: 118
effective length of query: 237
effective length of database: 127,894,771
effective search space: 30311060727
effective search space used: 30311060727
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)