Query psy15725
Match_columns 355
No_of_seqs 194 out of 2227
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 19:49:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15725.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15725hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0094|consensus 100.0 6.8E-35 1.5E-39 232.5 18.0 185 2-353 11-195 (221)
2 KOG0084|consensus 100.0 1.9E-34 4E-39 231.1 16.1 172 11-350 7-179 (205)
3 KOG0092|consensus 100.0 2E-32 4.4E-37 218.6 18.3 172 11-350 3-174 (200)
4 KOG0078|consensus 100.0 5.3E-32 1.2E-36 220.4 12.0 165 6-234 5-169 (207)
5 cd04121 Rab40 Rab40 subfamily. 100.0 1.7E-30 3.7E-35 218.3 19.0 173 12-353 5-177 (189)
6 KOG0098|consensus 100.0 2.1E-31 4.6E-36 210.8 10.2 158 11-232 4-161 (216)
7 KOG0394|consensus 100.0 2E-30 4.3E-35 205.0 15.2 175 9-347 5-182 (210)
8 KOG0080|consensus 100.0 3.9E-31 8.5E-36 203.8 10.6 161 8-231 6-166 (209)
9 cd04120 Rab12 Rab12 subfamily. 100.0 8.9E-30 1.9E-34 215.9 18.6 163 15-345 2-165 (202)
10 PRK03003 GTP-binding protein D 100.0 1.4E-29 3E-34 241.8 19.5 260 12-348 37-387 (472)
11 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 7.6E-29 1.6E-33 207.3 18.6 176 10-343 2-180 (182)
12 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 7.8E-29 1.7E-33 211.4 17.8 175 14-352 1-177 (201)
13 KOG0093|consensus 100.0 2.4E-29 5.2E-34 191.1 12.8 169 13-349 21-189 (193)
14 cd04133 Rop_like Rop subfamily 100.0 1.7E-28 3.7E-33 203.9 19.0 171 14-344 2-174 (176)
15 cd01875 RhoG RhoG subfamily. 100.0 2.5E-28 5.4E-33 206.4 19.4 177 12-346 2-180 (191)
16 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.5E-28 3.3E-33 204.2 17.5 166 13-346 2-167 (172)
17 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2.8E-28 6.1E-33 210.1 19.5 178 10-345 10-190 (232)
18 cd04131 Rnd Rnd subfamily. Th 100.0 2.8E-28 6E-33 203.4 18.4 173 13-343 1-176 (178)
19 KOG0087|consensus 100.0 7.2E-29 1.6E-33 201.0 13.6 157 11-231 12-168 (222)
20 cd04122 Rab14 Rab14 subfamily. 100.0 4.1E-28 8.9E-33 200.6 18.5 100 13-135 2-101 (166)
21 KOG0086|consensus 100.0 1.7E-29 3.7E-34 193.1 8.3 157 13-233 9-165 (214)
22 cd04117 Rab15 Rab15 subfamily. 100.0 1.2E-27 2.5E-32 196.9 18.9 160 14-341 1-160 (161)
23 PTZ00369 Ras-like protein; Pro 100.0 5.7E-28 1.2E-32 204.0 17.3 174 11-352 3-176 (189)
24 PLN03071 GTP-binding nuclear p 100.0 1.7E-27 3.6E-32 205.3 19.6 104 10-136 10-113 (219)
25 cd01865 Rab3 Rab3 subfamily. 100.0 1.7E-27 3.7E-32 196.7 18.4 163 14-344 2-164 (165)
26 cd01867 Rab8_Rab10_Rab13_like 100.0 1.7E-27 3.6E-32 197.2 18.3 101 12-135 2-102 (167)
27 cd04136 Rap_like Rap-like subf 100.0 2.1E-27 4.6E-32 195.6 18.0 98 14-135 2-99 (163)
28 cd04127 Rab27A Rab27a subfamil 100.0 1.6E-27 3.5E-32 199.7 17.6 166 12-344 3-178 (180)
29 KOG0088|consensus 100.0 2.5E-28 5.5E-33 187.8 11.3 183 1-351 1-183 (218)
30 KOG0079|consensus 100.0 6E-29 1.3E-33 189.1 7.4 155 12-231 7-161 (198)
31 cd01874 Cdc42 Cdc42 subfamily. 100.0 4E-27 8.7E-32 196.2 18.5 172 13-342 1-174 (175)
32 cd04110 Rab35 Rab35 subfamily. 100.0 5E-27 1.1E-31 199.8 19.1 168 12-348 5-172 (199)
33 cd04109 Rab28 Rab28 subfamily. 100.0 4.4E-27 9.5E-32 202.6 18.9 167 14-345 1-168 (215)
34 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 4.5E-27 9.8E-32 194.4 18.2 100 13-135 2-101 (166)
35 cd04125 RabA_like RabA-like su 100.0 4.4E-27 9.6E-32 198.5 18.2 171 14-352 1-171 (188)
36 TIGR03594 GTPase_EngA ribosome 100.0 4.2E-27 9.2E-32 223.6 19.9 252 15-346 1-347 (429)
37 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 6.3E-27 1.4E-31 200.8 18.7 177 13-347 1-180 (222)
38 cd04112 Rab26 Rab26 subfamily. 100.0 6.8E-27 1.5E-31 197.8 18.4 172 14-352 1-172 (191)
39 cd04119 RJL RJL (RabJ-Like) su 100.0 8E-27 1.7E-31 193.0 18.4 167 14-343 1-167 (168)
40 cd04128 Spg1 Spg1p. Spg1p (se 100.0 5.9E-27 1.3E-31 196.2 17.7 100 14-136 1-100 (182)
41 cd04134 Rho3 Rho3 subfamily. 100.0 1E-26 2.2E-31 196.3 19.2 181 14-352 1-183 (189)
42 cd04175 Rap1 Rap1 subgroup. T 100.0 7E-27 1.5E-31 192.9 17.5 98 14-135 2-99 (164)
43 PLN03110 Rab GTPase; Provision 100.0 1E-26 2.3E-31 200.2 18.9 168 10-345 9-176 (216)
44 cd04176 Rap2 Rap2 subgroup. T 99.9 1.1E-26 2.5E-31 191.4 18.1 99 13-135 1-99 (163)
45 cd04111 Rab39 Rab39 subfamily. 99.9 9.9E-27 2.1E-31 199.5 18.3 166 13-345 2-168 (211)
46 cd04106 Rab23_lke Rab23-like s 99.9 1.2E-26 2.6E-31 190.9 17.6 159 14-341 1-161 (162)
47 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 1.9E-26 4E-31 191.3 18.1 99 15-136 2-100 (170)
48 cd04144 Ras2 Ras2 subfamily. 99.9 1.1E-26 2.4E-31 196.3 17.0 169 15-349 1-169 (190)
49 cd00877 Ran Ran (Ras-related n 99.9 2.2E-26 4.8E-31 190.2 18.4 99 14-135 1-99 (166)
50 cd01868 Rab11_like Rab11-like. 99.9 2.3E-26 5E-31 189.9 18.5 100 13-135 3-102 (165)
51 PF00071 Ras: Ras family; Int 99.9 2.6E-26 5.7E-31 189.0 18.6 161 15-343 1-161 (162)
52 cd01871 Rac1_like Rac1-like su 99.9 2.2E-26 4.8E-31 191.5 18.3 170 14-341 2-173 (174)
53 cd04145 M_R_Ras_like M-Ras/R-R 99.9 2.5E-26 5.3E-31 189.4 17.8 100 12-135 1-100 (164)
54 cd01866 Rab2 Rab2 subfamily. 99.9 3.1E-26 6.7E-31 189.8 18.5 101 12-135 3-103 (168)
55 cd01873 RhoBTB RhoBTB subfamil 99.9 3.6E-26 7.9E-31 193.1 19.1 182 13-341 2-194 (195)
56 cd04113 Rab4 Rab4 subfamily. 99.9 3.2E-26 7E-31 188.3 18.1 161 14-342 1-161 (161)
57 cd01864 Rab19 Rab19 subfamily. 99.9 3.8E-26 8.3E-31 188.7 18.6 101 12-135 2-102 (165)
58 cd04124 RabL2 RabL2 subfamily. 99.9 3.8E-26 8.2E-31 187.9 17.9 99 14-135 1-99 (161)
59 cd04115 Rab33B_Rab33A Rab33B/R 99.9 4.8E-26 1E-30 189.0 18.1 163 13-342 2-168 (170)
60 cd04138 H_N_K_Ras_like H-Ras/N 99.9 5.3E-26 1.1E-30 186.9 17.8 99 13-135 1-99 (162)
61 smart00173 RAS Ras subfamily o 99.9 4.4E-26 9.4E-31 188.0 17.2 98 14-135 1-98 (164)
62 smart00176 RAN Ran (Ras-relate 99.9 3.5E-26 7.6E-31 193.6 17.0 95 19-136 1-95 (200)
63 cd04116 Rab9 Rab9 subfamily. 99.9 7.4E-26 1.6E-30 187.9 18.6 102 11-135 3-104 (170)
64 KOG0081|consensus 99.9 3.6E-28 7.7E-33 187.1 4.2 167 13-346 9-184 (219)
65 cd04140 ARHI_like ARHI subfami 99.9 6.4E-26 1.4E-30 187.3 18.0 98 14-135 2-99 (165)
66 KOG0091|consensus 99.9 2.9E-27 6.2E-32 183.0 8.8 157 12-230 7-164 (213)
67 PRK00093 GTP-binding protein D 99.9 6.7E-26 1.5E-30 215.6 19.2 252 14-346 2-347 (435)
68 cd04126 Rab20 Rab20 subfamily. 99.9 9.5E-26 2.1E-30 193.4 18.1 113 14-195 1-113 (220)
69 PLN03108 Rab family protein; P 99.9 1.1E-25 2.4E-30 193.0 18.1 166 12-345 5-170 (210)
70 cd04132 Rho4_like Rho4-like su 99.9 9.9E-26 2.1E-30 190.1 17.6 98 14-135 1-100 (187)
71 cd04103 Centaurin_gamma Centau 99.9 1.2E-25 2.6E-30 184.0 17.0 93 14-136 1-93 (158)
72 smart00175 RAB Rab subfamily o 99.9 1.7E-25 3.8E-30 184.3 17.9 163 14-344 1-163 (164)
73 cd04142 RRP22 RRP22 subfamily. 99.9 2E-25 4.3E-30 189.3 18.4 98 251-348 78-179 (198)
74 cd01861 Rab6 Rab6 subfamily. 99.9 2.1E-25 4.5E-30 183.4 18.0 98 14-134 1-98 (161)
75 cd04101 RabL4 RabL4 (Rab-like4 99.9 2.4E-25 5.3E-30 183.6 18.1 101 14-135 1-102 (164)
76 cd01860 Rab5_related Rab5-rela 99.9 3.6E-25 7.9E-30 182.3 18.7 101 13-136 1-101 (163)
77 cd04118 Rab24 Rab24 subfamily. 99.9 3.3E-25 7.1E-30 187.9 18.6 100 14-135 1-100 (193)
78 smart00174 RHO Rho (Ras homolo 99.9 3.9E-25 8.4E-30 184.2 17.9 171 16-344 1-173 (174)
79 PRK09518 bifunctional cytidyla 99.9 2.2E-25 4.8E-30 222.4 19.1 260 11-348 273-626 (712)
80 PLN03118 Rab family protein; P 99.9 5.8E-25 1.2E-29 188.9 19.1 168 10-345 11-179 (211)
81 cd04143 Rhes_like Rhes_like su 99.9 3.2E-25 6.9E-30 193.8 17.6 98 14-135 1-98 (247)
82 cd04177 RSR1 RSR1 subgroup. R 99.9 5.5E-25 1.2E-29 182.3 18.1 99 13-135 1-99 (168)
83 cd01892 Miro2 Miro2 subfamily. 99.9 3.4E-25 7.4E-30 183.6 16.5 101 12-134 3-103 (169)
84 KOG0095|consensus 99.9 1.6E-26 3.6E-31 176.1 7.7 157 13-233 7-163 (213)
85 cd01863 Rab18 Rab18 subfamily. 99.9 1.3E-24 2.9E-29 178.6 18.9 99 14-135 1-99 (161)
86 cd04148 RGK RGK subfamily. Th 99.9 8.1E-25 1.8E-29 188.9 17.8 165 14-348 1-168 (221)
87 cd01862 Rab7 Rab7 subfamily. 99.9 1.1E-24 2.3E-29 181.1 17.7 99 14-135 1-99 (172)
88 COG1160 Predicted GTPases [Gen 99.9 6.6E-25 1.4E-29 199.0 17.4 256 14-348 4-356 (444)
89 cd04123 Rab21 Rab21 subfamily. 99.9 2.1E-24 4.6E-29 177.3 18.7 99 14-135 1-99 (162)
90 cd04130 Wrch_1 Wrch-1 subfamil 99.9 1.9E-24 4.1E-29 180.0 18.4 99 14-136 1-100 (173)
91 cd04114 Rab30 Rab30 subfamily. 99.9 4.9E-24 1.1E-28 176.6 19.6 102 11-135 5-106 (169)
92 cd04146 RERG_RasL11_like RERG/ 99.9 1.3E-24 2.9E-29 179.4 15.9 162 15-343 1-164 (165)
93 KOG0083|consensus 99.9 1.1E-26 2.3E-31 173.8 2.8 152 17-232 1-153 (192)
94 KOG0393|consensus 99.9 1.2E-24 2.7E-29 178.4 14.5 179 11-347 2-183 (198)
95 cd04135 Tc10 TC10 subfamily. 99.9 5.7E-24 1.2E-28 177.2 18.6 171 14-342 1-173 (174)
96 cd01870 RhoA_like RhoA-like su 99.9 1.2E-23 2.7E-28 175.3 18.7 100 13-136 1-101 (175)
97 KOG0097|consensus 99.9 7.8E-25 1.7E-29 165.5 10.1 155 12-230 10-164 (215)
98 cd04129 Rho2 Rho2 subfamily. 99.9 2.3E-23 5E-28 175.6 18.9 178 13-350 1-180 (187)
99 cd04139 RalA_RalB RalA/RalB su 99.9 1.8E-23 3.9E-28 172.2 17.4 98 14-135 1-98 (164)
100 cd04149 Arf6 Arf6 subfamily. 99.9 7.2E-24 1.6E-28 175.4 14.9 95 12-134 8-102 (168)
101 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 4.8E-24 1E-28 179.1 13.5 100 12-135 2-102 (183)
102 smart00177 ARF ARF-like small 99.9 4.5E-24 9.8E-29 177.9 12.7 95 12-134 12-106 (175)
103 KOG0395|consensus 99.9 1.9E-24 4.1E-29 181.6 10.1 157 12-232 2-158 (196)
104 cd04158 ARD1 ARD1 subfamily. 99.9 1.3E-23 2.9E-28 174.1 15.2 93 15-135 1-93 (169)
105 cd04102 RabL3 RabL3 (Rab-like3 99.9 8.5E-24 1.8E-28 178.9 14.2 161 14-219 1-170 (202)
106 cd04150 Arf1_5_like Arf1-Arf5- 99.9 4.4E-24 9.6E-29 175.1 11.8 93 14-134 1-93 (159)
107 PLN00223 ADP-ribosylation fact 99.9 1.4E-23 3E-28 175.8 14.8 95 12-134 16-110 (181)
108 PTZ00132 GTP-binding nuclear p 99.9 5.9E-23 1.3E-27 177.0 19.0 107 6-135 2-108 (215)
109 cd04137 RheB Rheb (Ras Homolog 99.9 5.7E-23 1.2E-27 172.1 17.4 168 14-349 2-169 (180)
110 cd04147 Ras_dva Ras-dva subfam 99.9 7.2E-23 1.6E-27 174.1 17.0 97 15-135 1-97 (198)
111 PTZ00133 ADP-ribosylation fact 99.9 1E-23 2.3E-28 176.7 11.5 95 12-134 16-110 (182)
112 cd00876 Ras Ras family. The R 99.9 8.5E-23 1.8E-27 167.4 16.4 97 15-135 1-97 (160)
113 cd00157 Rho Rho (Ras homology) 99.9 1.7E-22 3.7E-27 167.7 17.9 99 14-136 1-100 (171)
114 PLN00023 GTP-binding protein; 99.9 5E-23 1.1E-27 182.2 14.8 156 7-214 15-189 (334)
115 cd01893 Miro1 Miro1 subfamily. 99.9 1.7E-22 3.7E-27 167.0 16.6 98 14-136 1-99 (166)
116 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 1.9E-23 4.2E-28 172.2 10.2 139 16-223 2-144 (164)
117 cd04154 Arl2 Arl2 subfamily. 99.9 1.6E-22 3.4E-27 168.4 15.4 97 10-134 11-107 (173)
118 cd00154 Rab Rab family. Rab G 99.9 8.7E-23 1.9E-27 166.7 12.9 153 14-230 1-153 (159)
119 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 2.9E-22 6.3E-27 166.9 11.8 95 12-134 14-108 (174)
120 cd04160 Arfrp1 Arfrp1 subfamil 99.9 1.1E-21 2.3E-26 162.3 14.5 100 15-135 1-100 (167)
121 PTZ00099 rab6; Provisional 99.9 2.6E-21 5.6E-26 160.8 16.7 77 59-135 3-79 (176)
122 PF00025 Arf: ADP-ribosylation 99.9 4.1E-21 8.9E-26 159.8 17.6 96 11-134 12-107 (175)
123 KOG0070|consensus 99.9 9.7E-22 2.1E-26 157.2 11.1 97 10-134 14-110 (181)
124 cd01890 LepA LepA subfamily. 99.9 3.5E-21 7.6E-26 161.1 15.0 103 15-127 2-109 (179)
125 cd00879 Sar1 Sar1 subfamily. 99.9 4.3E-21 9.2E-26 162.2 15.5 97 11-135 17-113 (190)
126 KOG0073|consensus 99.9 4.9E-21 1.1E-25 148.9 13.5 91 10-128 13-103 (185)
127 KOG0078|consensus 99.9 1.2E-21 2.6E-26 160.0 10.6 118 228-345 59-176 (207)
128 smart00178 SAR Sar1p-like memb 99.9 1.2E-20 2.6E-25 158.5 15.3 97 11-135 15-111 (184)
129 cd04161 Arl2l1_Arl13_like Arl2 99.9 3.4E-21 7.4E-26 159.3 11.3 142 15-224 1-148 (167)
130 cd04157 Arl6 Arl6 subfamily. 99.8 3.9E-21 8.4E-26 158.0 9.5 153 15-231 1-156 (162)
131 cd04151 Arl1 Arl1 subfamily. 99.8 1.7E-21 3.7E-26 159.6 6.9 149 15-231 1-152 (158)
132 cd04156 ARLTS1 ARLTS1 subfamil 99.8 5.7E-21 1.2E-25 156.8 9.7 150 15-231 1-154 (160)
133 KOG0098|consensus 99.8 8.7E-21 1.9E-25 150.7 9.7 120 226-345 51-170 (216)
134 KOG4252|consensus 99.8 1.1E-22 2.5E-27 160.0 -2.1 157 11-232 18-174 (246)
135 cd04168 TetM_like Tet(M)-like 99.8 1.3E-19 2.8E-24 157.5 16.3 237 15-345 1-237 (237)
136 cd00878 Arf_Arl Arf (ADP-ribos 99.8 4.7E-20 1E-24 151.0 11.7 146 15-230 1-151 (158)
137 cd04169 RF3 RF3 subfamily. Pe 99.8 1E-18 2.3E-23 154.3 20.4 265 14-345 3-267 (267)
138 cd01897 NOG NOG1 is a nucleola 99.8 2.3E-19 5E-24 148.4 15.0 85 255-342 81-167 (168)
139 KOG0080|consensus 99.8 6.7E-20 1.4E-24 141.9 10.4 121 225-345 55-176 (209)
140 cd01898 Obg Obg subfamily. Th 99.8 2.9E-19 6.2E-24 148.1 14.4 56 286-342 114-170 (170)
141 cd04155 Arl3 Arl3 subfamily. 99.8 5.6E-20 1.2E-24 152.9 9.8 98 9-134 10-107 (173)
142 KOG0087|consensus 99.8 2.4E-19 5.2E-24 145.8 12.3 132 212-345 47-178 (222)
143 TIGR00231 small_GTP small GTP- 99.8 1.2E-18 2.5E-23 142.0 16.1 85 13-120 1-85 (161)
144 PF08477 Miro: Miro-like prote 99.8 2.4E-19 5.2E-24 139.6 10.7 100 15-135 1-100 (119)
145 PRK12299 obgE GTPase CgtA; Rev 99.8 6.8E-19 1.5E-23 159.9 15.1 94 254-347 237-332 (335)
146 cd04159 Arl10_like Arl10-like 99.8 2.9E-19 6.3E-24 145.9 11.0 148 16-230 2-152 (159)
147 KOG0086|consensus 99.8 3E-19 6.5E-24 137.0 9.6 126 220-345 48-173 (214)
148 KOG0091|consensus 99.8 5.6E-19 1.2E-23 137.2 10.6 117 228-344 56-174 (213)
149 KOG0083|consensus 99.8 2.3E-19 4.9E-24 134.6 7.8 122 225-346 42-163 (192)
150 KOG0071|consensus 99.8 1.1E-18 2.3E-23 132.2 10.9 90 12-129 16-105 (180)
151 PRK04213 GTP-binding protein; 99.8 1.6E-18 3.5E-23 147.7 13.3 59 285-347 129-196 (201)
152 cd01886 EF-G Elongation factor 99.8 9.4E-18 2E-22 148.4 18.1 257 15-345 1-270 (270)
153 cd01878 HflX HflX subfamily. 99.8 2.2E-18 4.7E-23 147.3 13.6 84 254-342 121-204 (204)
154 KOG0079|consensus 99.8 1.2E-18 2.5E-23 133.1 10.4 121 225-346 52-172 (198)
155 TIGR01393 lepA GTP-binding pro 99.8 4.3E-18 9.4E-23 165.8 16.6 108 14-133 4-118 (595)
156 cd04170 EF-G_bact Elongation f 99.8 4.4E-18 9.5E-23 151.4 14.9 256 15-345 1-268 (268)
157 COG1100 GTPase SAR1 and relate 99.8 3.4E-18 7.4E-23 147.8 13.7 123 12-198 4-127 (219)
158 cd01891 TypA_BipA TypA (tyrosi 99.8 1.6E-18 3.4E-23 146.9 10.6 158 14-229 3-172 (194)
159 cd04171 SelB SelB subfamily. 99.8 2.2E-18 4.9E-23 141.7 10.6 149 14-230 1-157 (164)
160 PRK15494 era GTPase Era; Provi 99.8 1E-17 2.2E-22 153.3 16.0 85 253-345 131-218 (339)
161 cd01879 FeoB Ferrous iron tran 99.8 8.8E-18 1.9E-22 137.3 14.0 83 254-343 75-157 (158)
162 TIGR02528 EutP ethanolamine ut 99.8 5.2E-19 1.1E-23 142.2 6.6 129 15-230 2-136 (142)
163 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.5E-17 3.2E-22 137.5 13.9 85 15-122 2-87 (168)
164 TIGR00436 era GTP-binding prot 99.8 9.2E-18 2E-22 149.4 13.6 89 252-346 78-167 (270)
165 KOG0095|consensus 99.8 2.8E-18 6E-23 131.2 7.8 123 223-345 49-171 (213)
166 KOG0075|consensus 99.7 2.1E-18 4.5E-23 131.6 6.8 150 12-228 19-171 (186)
167 KOG1673|consensus 99.7 2.5E-18 5.4E-23 132.4 7.3 159 8-231 15-178 (205)
168 PRK00741 prfC peptide chain re 99.7 6.2E-17 1.4E-21 155.4 18.3 269 11-347 8-278 (526)
169 KOG3883|consensus 99.7 2.6E-17 5.6E-22 126.6 12.5 153 12-226 8-162 (198)
170 cd00881 GTP_translation_factor 99.7 4.6E-17 9.9E-22 137.1 15.3 102 15-125 1-102 (189)
171 cd00882 Ras_like_GTPase Ras-li 99.7 3.4E-17 7.3E-22 132.1 13.8 90 18-130 1-90 (157)
172 TIGR02729 Obg_CgtA Obg family 99.7 3.3E-17 7.2E-22 148.8 15.1 57 285-342 272-328 (329)
173 PRK15467 ethanolamine utilizat 99.7 1.1E-17 2.3E-22 136.8 10.6 84 254-346 65-150 (158)
174 TIGR00503 prfC peptide chain r 99.7 1.7E-16 3.6E-21 152.5 20.4 110 9-121 7-116 (527)
175 cd01896 DRG The developmentall 99.7 4.6E-16 1E-20 135.1 20.8 52 285-343 175-226 (233)
176 cd01889 SelB_euk SelB subfamil 99.7 2.9E-17 6.4E-22 138.9 12.7 30 316-345 159-188 (192)
177 TIGR03156 GTP_HflX GTP-binding 99.7 1.9E-16 4.1E-21 145.1 18.5 85 252-342 267-351 (351)
178 TIGR00491 aIF-2 translation in 99.7 1.5E-17 3.3E-22 160.9 11.5 95 14-127 5-114 (590)
179 KOG0097|consensus 99.7 4.5E-17 9.8E-22 123.5 10.5 126 213-344 49-174 (215)
180 PRK05433 GTP-binding protein L 99.7 1.6E-16 3.4E-21 155.1 16.7 110 13-132 7-121 (600)
181 PF00009 GTP_EFTU: Elongation 99.7 4.5E-17 9.8E-22 137.3 11.3 108 12-124 2-109 (188)
182 cd01888 eIF2_gamma eIF2-gamma 99.7 1.6E-16 3.4E-21 135.5 13.6 36 85-120 83-118 (203)
183 KOG0096|consensus 99.7 5.5E-17 1.2E-21 129.5 9.8 158 11-235 8-165 (216)
184 PRK13351 elongation factor G; 99.7 4.4E-16 9.6E-21 155.8 18.1 273 12-347 7-282 (687)
185 cd01881 Obg_like The Obg-like 99.7 1.1E-16 2.3E-21 133.3 11.3 58 285-342 119-176 (176)
186 PRK05291 trmE tRNA modificatio 99.7 1.4E-16 3E-21 151.0 13.4 79 252-344 293-371 (449)
187 PRK12297 obgE GTPase CgtA; Rev 99.7 5.5E-16 1.2E-20 144.4 16.9 90 254-347 237-331 (424)
188 TIGR00487 IF-2 translation ini 99.7 5.3E-16 1.2E-20 150.5 16.9 87 12-122 86-172 (587)
189 cd01894 EngA1 EngA1 subfamily. 99.7 2.3E-16 5.1E-21 128.6 11.7 52 286-342 105-157 (157)
190 PF02421 FeoB_N: Ferrous iron 99.7 3.2E-17 6.9E-22 131.5 6.0 143 14-229 1-151 (156)
191 CHL00189 infB translation init 99.7 6.2E-16 1.3E-20 152.2 15.7 91 12-123 243-333 (742)
192 KOG0076|consensus 99.7 5.3E-17 1.1E-21 127.8 6.4 98 12-129 16-113 (197)
193 PRK12296 obgE GTPase CgtA; Rev 99.7 1.3E-15 2.8E-20 143.6 16.7 63 285-348 283-345 (500)
194 TIGR00450 mnmE_trmE_thdF tRNA 99.7 4.4E-16 9.6E-21 146.7 13.2 141 12-229 202-350 (442)
195 PRK00454 engB GTP-binding prot 99.7 1.1E-15 2.3E-20 129.8 14.3 86 254-343 107-194 (196)
196 PRK11058 GTPase HflX; Provisio 99.7 2.1E-15 4.5E-20 141.4 17.5 88 252-344 275-363 (426)
197 KOG0072|consensus 99.7 1E-16 2.2E-21 122.0 6.9 86 12-125 17-102 (182)
198 COG1159 Era GTPase [General fu 99.7 9.4E-16 2E-20 132.5 13.6 90 251-345 83-174 (298)
199 TIGR00484 EF-G translation elo 99.7 1.1E-15 2.5E-20 152.5 16.2 112 12-130 9-120 (689)
200 cd01895 EngA2 EngA2 subfamily. 99.7 2.1E-15 4.6E-20 124.9 14.9 84 254-341 85-173 (174)
201 PRK00089 era GTPase Era; Revie 99.7 1.1E-15 2.3E-20 137.9 14.1 90 252-345 83-173 (292)
202 PRK10218 GTP-binding protein; 99.7 2.9E-15 6.3E-20 145.6 17.1 102 13-125 5-108 (607)
203 PRK04004 translation initiatio 99.7 9.5E-16 2.1E-20 149.1 13.4 97 12-127 5-116 (586)
204 TIGR01394 TypA_BipA GTP-bindin 99.7 2.5E-15 5.5E-20 146.2 16.2 109 15-135 3-113 (594)
205 cd04105 SR_beta Signal recogni 99.7 5E-16 1.1E-20 132.3 10.0 120 15-196 2-123 (203)
206 PRK05306 infB translation init 99.7 1.8E-15 3.8E-20 150.3 15.2 86 11-121 288-373 (787)
207 PRK12298 obgE GTPase CgtA; Rev 99.7 2.3E-15 4.9E-20 139.6 14.8 91 254-345 238-335 (390)
208 KOG0395|consensus 99.7 1.4E-15 3E-20 127.9 12.3 120 227-346 48-168 (196)
209 TIGR03598 GTPase_YsxC ribosome 99.6 1E-15 2.2E-20 128.0 11.0 146 11-227 16-178 (179)
210 KOG0074|consensus 99.6 1.1E-15 2.4E-20 116.0 9.6 152 10-228 14-168 (185)
211 cd04164 trmE TrmE (MnmE, ThdF, 99.6 1.6E-15 3.6E-20 123.5 11.0 139 14-230 2-148 (157)
212 PRK03003 GTP-binding protein D 99.6 6.5E-16 1.4E-20 148.0 9.6 153 12-233 210-376 (472)
213 TIGR00475 selB selenocysteine- 99.6 1.5E-15 3.3E-20 148.0 10.8 148 14-231 1-158 (581)
214 KOG4423|consensus 99.6 2.1E-17 4.4E-22 131.4 -2.4 159 11-229 23-184 (229)
215 KOG1423|consensus 99.6 6.3E-15 1.4E-19 126.7 12.0 91 6-120 65-167 (379)
216 TIGR03680 eif2g_arch translati 99.6 7.8E-15 1.7E-19 137.8 13.9 106 12-121 3-116 (406)
217 PRK12739 elongation factor G; 99.6 2.3E-14 4.9E-19 143.2 17.6 108 11-125 6-113 (691)
218 TIGR00437 feoB ferrous iron tr 99.6 8.1E-15 1.7E-19 143.1 14.1 82 254-342 73-154 (591)
219 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 1.3E-15 2.9E-20 125.4 6.9 112 228-340 42-163 (164)
220 cd00880 Era_like Era (E. coli 99.6 1.6E-14 3.5E-19 117.5 13.1 87 18-127 1-94 (163)
221 cd04166 CysN_ATPS CysN_ATPS su 99.6 4.8E-15 1E-19 126.9 9.6 169 15-229 1-184 (208)
222 PRK04000 translation initiatio 99.6 2E-14 4.3E-19 134.9 14.0 32 317-348 175-206 (411)
223 TIGR00483 EF-1_alpha translati 99.6 8.5E-15 1.8E-19 138.7 10.7 176 10-229 4-197 (426)
224 PRK09554 feoB ferrous iron tra 99.6 1E-14 2.2E-19 145.6 11.7 147 12-231 2-160 (772)
225 TIGR03594 GTPase_EngA ribosome 99.6 7.6E-15 1.7E-19 139.7 10.3 152 11-231 170-336 (429)
226 cd04165 GTPBP1_like GTPBP1-lik 99.6 4.5E-14 9.7E-19 121.7 14.1 104 15-122 1-123 (224)
227 PRK12317 elongation factor 1-a 99.6 1.6E-14 3.4E-19 136.9 12.0 175 11-230 4-196 (425)
228 PRK00007 elongation factor G; 99.6 4.3E-14 9.2E-19 141.2 15.4 112 12-130 9-120 (693)
229 cd01885 EF2 EF2 (for archaea a 99.6 1.8E-14 3.9E-19 123.6 10.2 106 15-127 2-115 (222)
230 PRK10512 selenocysteinyl-tRNA- 99.6 8.4E-14 1.8E-18 136.3 15.6 85 15-120 2-86 (614)
231 cd00154 Rab Rab family. Rab G 99.6 4.7E-14 1E-18 114.8 11.5 113 228-340 47-159 (159)
232 cd04157 Arl6 Arl6 subfamily. 99.5 2.9E-14 6.4E-19 116.9 10.2 111 228-340 43-161 (162)
233 cd04163 Era Era subfamily. Er 99.5 4.9E-14 1.1E-18 115.7 11.5 148 13-229 3-159 (168)
234 cd04161 Arl2l1_Arl13_like Arl2 99.5 1.5E-14 3.2E-19 119.5 8.2 113 228-340 41-166 (167)
235 COG2229 Predicted GTPase [Gene 99.5 6.2E-14 1.3E-18 112.3 11.2 159 8-226 5-165 (187)
236 PRK12740 elongation factor G; 99.5 1.2E-13 2.7E-18 138.0 16.3 105 19-130 1-105 (668)
237 cd04167 Snu114p Snu114p subfam 99.5 3.2E-14 7E-19 122.3 10.3 105 15-125 2-111 (213)
238 cd04156 ARLTS1 ARLTS1 subfamil 99.5 2.6E-14 5.6E-19 117.1 8.7 110 229-340 43-159 (160)
239 COG1163 DRG Predicted GTPase [ 99.5 7.1E-13 1.5E-17 115.3 17.7 95 11-130 61-163 (365)
240 PRK12736 elongation factor Tu; 99.5 2.1E-13 4.5E-18 127.7 15.4 107 6-121 5-111 (394)
241 cd01884 EF_Tu EF-Tu subfamily. 99.5 7.6E-14 1.7E-18 117.7 11.2 163 12-228 1-172 (195)
242 KOG0462|consensus 99.5 2E-13 4.4E-18 125.9 14.4 100 13-122 60-162 (650)
243 cd04151 Arl1 Arl1 subfamily. 99.5 1.9E-14 4.1E-19 117.7 6.9 111 228-340 41-157 (158)
244 cd01899 Ygr210 Ygr210 subfamil 99.5 3.4E-14 7.3E-19 128.1 9.0 61 285-349 213-275 (318)
245 COG4108 PrfC Peptide chain rel 99.5 1.8E-13 3.9E-18 123.1 12.6 166 11-226 10-175 (528)
246 PRK12735 elongation factor Tu; 99.5 5E-13 1.1E-17 125.2 16.2 106 6-121 5-111 (396)
247 PRK00093 GTP-binding protein D 99.5 9.6E-14 2.1E-18 132.3 10.9 152 11-231 171-336 (435)
248 cd00878 Arf_Arl Arf (ADP-ribos 99.5 6.5E-14 1.4E-18 114.5 8.4 110 229-340 42-157 (158)
249 KOG1707|consensus 99.5 2.5E-14 5.4E-19 132.9 6.1 162 6-231 2-167 (625)
250 KOG4252|consensus 99.5 2.6E-15 5.6E-20 118.7 -0.9 158 181-347 19-185 (246)
251 cd01883 EF1_alpha Eukaryotic e 99.5 1.4E-13 3.1E-18 118.7 9.2 105 15-121 1-113 (219)
252 PF10662 PduV-EutP: Ethanolami 99.5 5.2E-13 1.1E-17 104.8 11.2 53 286-339 89-142 (143)
253 PRK09518 bifunctional cytidyla 99.5 2.1E-13 4.6E-18 136.7 10.4 152 12-232 449-614 (712)
254 COG0486 ThdF Predicted GTPase 99.5 4.6E-13 1E-17 122.6 11.6 141 14-230 218-367 (454)
255 COG0480 FusA Translation elong 99.5 2E-12 4.2E-17 126.9 16.5 135 10-196 7-142 (697)
256 cd01850 CDC_Septin CDC/Septin. 99.5 1E-12 2.2E-17 116.8 12.9 71 12-95 3-73 (276)
257 PRK00049 elongation factor Tu; 99.4 3.1E-12 6.7E-17 119.8 15.8 107 6-121 5-111 (396)
258 COG0370 FeoB Fe2+ transport sy 99.4 1.6E-12 3.4E-17 124.2 13.7 86 254-346 82-167 (653)
259 PRK09602 translation-associate 99.4 6.7E-13 1.5E-17 123.3 10.9 58 285-346 216-274 (396)
260 TIGR00485 EF-Tu translation el 99.4 9.2E-13 2E-17 123.5 11.6 107 6-121 5-111 (394)
261 cd01876 YihA_EngB The YihA (En 99.4 4.9E-13 1.1E-17 110.0 7.9 142 15-229 1-161 (170)
262 COG0218 Predicted GTPase [Gene 99.4 1.8E-11 3.9E-16 100.5 16.8 86 255-344 108-198 (200)
263 CHL00071 tufA elongation facto 99.4 2.2E-12 4.8E-17 121.4 12.1 165 8-226 7-180 (409)
264 PLN03127 Elongation factor Tu; 99.4 6.5E-12 1.4E-16 118.8 15.2 103 9-121 57-160 (447)
265 COG0481 LepA Membrane GTPase L 99.4 2.2E-12 4.9E-17 117.2 11.4 119 228-352 74-195 (603)
266 PRK05124 cysN sulfate adenylyl 99.4 1.9E-12 4.2E-17 123.5 10.9 175 10-230 24-216 (474)
267 TIGR02034 CysN sulfate adenyly 99.4 1.8E-12 3.9E-17 121.8 10.2 170 14-229 1-187 (406)
268 PLN00043 elongation factor 1-a 99.4 2.6E-12 5.7E-17 121.6 11.1 172 10-228 4-202 (447)
269 PTZ00327 eukaryotic translatio 99.4 6.5E-12 1.4E-16 118.6 13.7 111 10-121 31-153 (460)
270 KOG0075|consensus 99.4 1E-12 2.2E-17 100.7 6.6 120 227-346 62-185 (186)
271 PRK09866 hypothetical protein; 99.4 4.9E-12 1.1E-16 120.4 12.1 113 226-340 226-350 (741)
272 PF01926 MMR_HSR1: 50S ribosom 99.4 4.2E-12 9E-17 98.2 9.4 82 15-120 1-91 (116)
273 COG1160 Predicted GTPases [Gen 99.4 6.1E-12 1.3E-16 115.1 11.9 149 12-231 177-343 (444)
274 COG2262 HflX GTPases [General 99.4 3.4E-11 7.4E-16 108.6 16.4 88 253-345 271-358 (411)
275 PLN03126 Elongation factor Tu; 99.4 4.8E-12 1E-16 120.3 11.7 163 10-226 78-249 (478)
276 PF09439 SRPRB: Signal recogni 99.4 1.9E-12 4.1E-17 106.3 7.4 120 13-197 3-127 (181)
277 COG1084 Predicted GTPase [Gene 99.3 5E-12 1.1E-16 110.6 9.8 117 13-200 168-298 (346)
278 COG0532 InfB Translation initi 99.3 2E-11 4.4E-16 113.5 14.4 84 15-121 7-91 (509)
279 cd04102 RabL3 RabL3 (Rab-like3 99.3 6.2E-12 1.3E-16 106.6 9.8 100 228-327 52-174 (202)
280 cd04159 Arl10_like Arl10-like 99.3 5.1E-12 1.1E-16 102.8 8.8 110 229-340 43-158 (159)
281 PRK05506 bifunctional sulfate 99.3 8E-12 1.7E-16 124.0 10.8 174 10-229 21-211 (632)
282 cd04104 p47_IIGP_like p47 (47- 99.3 1.2E-11 2.5E-16 105.0 9.6 98 13-135 1-104 (197)
283 KOG1673|consensus 99.3 3.7E-11 7.9E-16 93.1 10.2 134 208-344 49-187 (205)
284 KOG0077|consensus 99.3 4.6E-12 9.9E-17 99.4 5.0 118 13-198 20-137 (193)
285 KOG0074|consensus 99.3 1E-11 2.2E-16 94.6 6.7 115 228-343 60-179 (185)
286 COG0536 Obg Predicted GTPase [ 99.3 2.5E-11 5.4E-16 106.7 9.9 95 252-346 236-336 (369)
287 TIGR00157 ribosome small subun 99.3 1.6E-11 3.4E-16 107.3 8.5 97 241-341 24-121 (245)
288 COG5256 TEF1 Translation elong 99.3 4.3E-11 9.3E-16 107.8 11.4 111 10-122 4-122 (428)
289 KOG1191|consensus 99.3 5.5E-11 1.2E-15 109.0 12.2 83 14-120 269-360 (531)
290 TIGR02528 EutP ethanolamine ut 99.3 1.3E-11 2.8E-16 99.0 7.2 98 233-339 38-141 (142)
291 TIGR00490 aEF-2 translation el 99.3 1.4E-11 3.1E-16 123.6 8.9 107 11-125 17-126 (720)
292 PTZ00141 elongation factor 1- 99.3 3.6E-11 7.9E-16 113.9 11.2 111 9-121 3-121 (446)
293 KOG0096|consensus 99.2 1.9E-11 4E-16 98.2 7.2 130 211-345 42-171 (216)
294 cd04171 SelB SelB subfamily. 99.2 4.1E-11 9E-16 98.2 9.6 109 229-340 50-163 (164)
295 PLN00023 GTP-binding protein; 99.2 4.1E-11 8.8E-16 106.8 9.9 90 228-317 81-188 (334)
296 PF04670 Gtr1_RagA: Gtr1/RagA 99.2 5.2E-11 1.1E-15 102.2 9.8 120 15-196 1-125 (232)
297 KOG0465|consensus 99.2 2.6E-11 5.7E-16 113.3 8.2 274 12-351 38-316 (721)
298 KOG1489|consensus 99.2 5.6E-11 1.2E-15 103.2 9.1 149 14-229 197-357 (366)
299 KOG3905|consensus 99.2 1.9E-10 4E-15 100.1 12.1 99 13-137 52-157 (473)
300 cd01891 TypA_BipA TypA (tyrosi 99.2 6.7E-11 1.5E-15 100.1 9.4 113 228-344 63-193 (194)
301 cd00066 G-alpha G protein alph 99.2 4.5E-12 9.7E-17 115.1 1.3 119 228-346 159-314 (317)
302 KOG0090|consensus 99.2 3.1E-10 6.8E-15 93.2 10.5 115 14-195 39-158 (238)
303 KOG3883|consensus 99.1 1.2E-09 2.5E-14 84.7 11.9 136 216-352 47-184 (198)
304 KOG0393|consensus 99.1 3.6E-10 7.8E-15 93.3 9.7 85 214-299 36-122 (198)
305 smart00275 G_alpha G protein a 99.1 5.5E-12 1.2E-16 115.4 -1.3 119 228-346 182-337 (342)
306 PRK14845 translation initiatio 99.1 4.3E-10 9.2E-15 114.8 12.0 35 86-120 527-561 (1049)
307 PRK09435 membrane ATPase/prote 99.1 1.7E-09 3.6E-14 97.9 14.4 103 230-343 149-260 (332)
308 PLN00116 translation elongatio 99.1 1.9E-10 4.1E-15 117.3 9.2 116 10-132 16-145 (843)
309 PTZ00416 elongation factor 2; 99.1 2.2E-10 4.7E-15 116.6 9.2 113 11-130 17-137 (836)
310 KOG0082|consensus 99.1 7.3E-12 1.6E-16 112.3 -1.9 122 227-348 192-349 (354)
311 KOG1145|consensus 99.1 4.2E-10 9.1E-15 104.3 9.3 143 14-230 154-307 (683)
312 COG1100 GTPase SAR1 and relate 99.1 7.3E-10 1.6E-14 95.6 10.1 117 229-345 53-187 (219)
313 PRK13768 GTPase; Provisional 99.1 4.6E-10 9.9E-15 98.7 8.0 114 231-345 98-249 (253)
314 TIGR00101 ureG urease accessor 99.1 3.6E-09 7.8E-14 89.5 13.0 82 254-343 113-196 (199)
315 smart00010 small_GTPase Small 99.1 7.5E-10 1.6E-14 86.3 8.2 93 14-198 1-93 (124)
316 PF05783 DLIC: Dynein light in 99.0 1.7E-09 3.6E-14 102.1 11.7 101 11-137 23-130 (472)
317 PRK07560 elongation factor EF- 99.0 4.2E-10 9.2E-15 113.3 8.0 114 11-131 18-133 (731)
318 TIGR00073 hypB hydrogenase acc 99.0 1.1E-08 2.4E-13 87.4 15.4 57 286-342 148-206 (207)
319 COG3596 Predicted GTPase [Gene 99.0 4E-10 8.7E-15 96.5 6.3 96 11-130 37-139 (296)
320 COG2229 Predicted GTPase [Gene 99.0 2.9E-09 6.3E-14 85.7 10.7 111 229-344 67-180 (187)
321 KOG4423|consensus 99.0 5.7E-10 1.2E-14 89.3 6.4 120 230-349 75-200 (229)
322 COG1217 TypA Predicted membran 99.0 1.4E-09 3E-14 99.1 9.1 103 14-125 6-108 (603)
323 cd01852 AIG1 AIG1 (avrRpt2-ind 99.0 2.5E-09 5.4E-14 90.7 9.9 84 14-120 1-95 (196)
324 cd04164 trmE TrmE (MnmE, ThdF, 99.0 2.6E-09 5.7E-14 86.6 9.7 101 229-342 48-156 (157)
325 TIGR00991 3a0901s02IAP34 GTP-b 99.0 4E-09 8.7E-14 93.6 10.9 85 11-120 36-130 (313)
326 KOG1532|consensus 99.0 8.6E-09 1.9E-13 88.0 11.9 88 256-345 150-266 (366)
327 TIGR00450 mnmE_trmE_thdF tRNA 99.0 3.2E-09 7E-14 100.4 10.0 106 228-345 249-362 (442)
328 PTZ00258 GTP-binding protein; 98.9 7.5E-09 1.6E-13 95.4 11.7 27 11-37 19-45 (390)
329 TIGR00475 selB selenocysteine- 98.9 4.1E-09 8.8E-14 103.3 10.5 113 230-346 50-169 (581)
330 KOG1144|consensus 98.9 1.2E-09 2.6E-14 104.3 6.4 102 9-121 471-576 (1064)
331 cd04142 RRP22 RRP22 subfamily. 98.9 8.3E-10 1.8E-14 93.6 4.8 158 14-232 1-167 (198)
332 cd01853 Toc34_like Toc34-like 98.9 6.9E-09 1.5E-13 90.7 10.6 86 11-120 29-126 (249)
333 COG5257 GCD11 Translation init 98.9 1.3E-08 2.8E-13 88.8 11.6 121 231-353 87-212 (415)
334 COG0050 TufB GTPases - transla 98.9 1.7E-08 3.8E-13 86.9 10.8 107 6-122 5-112 (394)
335 TIGR00483 EF-1_alpha translati 98.9 1E-08 2.2E-13 97.4 10.1 113 227-340 82-216 (426)
336 PF00350 Dynamin_N: Dynamin fa 98.9 1.3E-08 2.7E-13 84.0 9.3 51 85-135 101-155 (168)
337 KOG0464|consensus 98.9 3.3E-09 7.2E-14 95.2 5.5 116 10-132 34-149 (753)
338 TIGR02836 spore_IV_A stage IV 98.8 4E-08 8.6E-13 89.6 12.3 162 11-220 15-216 (492)
339 KOG1145|consensus 98.8 1.8E-08 4E-13 93.6 10.3 155 180-343 150-316 (683)
340 PF03029 ATP_bind_1: Conserved 98.8 4.1E-10 8.9E-15 97.8 -0.7 112 231-342 92-236 (238)
341 KOG1486|consensus 98.8 5E-07 1.1E-11 76.3 17.5 87 11-125 60-156 (364)
342 PF02421 FeoB_N: Ferrous iron 98.8 4.4E-09 9.5E-14 84.6 5.0 103 229-338 46-156 (156)
343 PRK12317 elongation factor 1-a 98.8 2.6E-08 5.7E-13 94.6 10.6 104 228-333 82-195 (425)
344 KOG1490|consensus 98.8 8.3E-09 1.8E-13 94.9 6.7 150 11-230 166-332 (620)
345 cd01859 MJ1464 MJ1464. This f 98.8 8.4E-09 1.8E-13 84.0 5.8 95 244-344 3-97 (156)
346 cd01882 BMS1 Bms1. Bms1 is an 98.8 4.8E-08 1.1E-12 84.5 10.6 83 10-123 36-118 (225)
347 PF00503 G-alpha: G-protein al 98.8 7E-10 1.5E-14 104.0 -1.6 115 228-342 234-389 (389)
348 cd01884 EF_Tu EF-Tu subfamily. 98.8 7.5E-08 1.6E-12 81.3 10.8 113 228-344 63-194 (195)
349 cd04163 Era Era subfamily. Er 98.8 4.9E-08 1.1E-12 79.8 9.4 110 229-342 50-168 (168)
350 cd01855 YqeH YqeH. YqeH is an 98.8 3E-08 6.4E-13 83.6 8.3 94 243-343 24-125 (190)
351 smart00053 DYNc Dynamin, GTPas 98.8 7.7E-08 1.7E-12 83.2 10.8 27 12-38 25-51 (240)
352 KOG1707|consensus 98.8 7.3E-08 1.6E-12 90.5 11.3 135 12-214 424-558 (625)
353 PRK12289 GTPase RsgA; Reviewed 98.8 3.6E-08 7.9E-13 90.2 9.2 92 246-342 82-174 (352)
354 KOG3886|consensus 98.8 9.7E-09 2.1E-13 85.4 4.8 100 13-136 4-109 (295)
355 KOG0071|consensus 98.7 3.8E-08 8.3E-13 75.3 7.5 114 228-343 59-178 (180)
356 TIGR00750 lao LAO/AO transport 98.7 1.7E-07 3.6E-12 84.8 13.1 103 230-343 127-238 (300)
357 TIGR00157 ribosome small subun 98.7 1.3E-08 2.9E-13 89.0 5.4 93 96-233 24-117 (245)
358 KOG0458|consensus 98.7 9.2E-08 2E-12 89.8 10.8 110 9-120 173-290 (603)
359 COG0378 HypB Ni2+-binding GTPa 98.7 4.4E-07 9.5E-12 74.3 13.4 78 256-342 120-200 (202)
360 KOG0468|consensus 98.7 6.4E-08 1.4E-12 91.8 9.5 115 9-129 124-241 (971)
361 KOG0394|consensus 98.7 6E-08 1.3E-12 77.9 7.7 73 210-284 40-112 (210)
362 PRK12288 GTPase RsgA; Reviewed 98.7 1.2E-07 2.6E-12 86.9 10.0 90 250-342 117-207 (347)
363 PF05049 IIGP: Interferon-indu 98.7 5E-08 1.1E-12 89.0 7.3 25 12-36 34-58 (376)
364 PRK10463 hydrogenase nickel in 98.7 7.1E-07 1.5E-11 78.9 13.9 56 286-341 230-287 (290)
365 cd01854 YjeQ_engC YjeQ/EngC. 98.7 1.2E-07 2.6E-12 85.1 9.1 87 249-340 74-161 (287)
366 COG2895 CysN GTPases - Sulfate 98.6 1.1E-07 2.5E-12 84.1 8.6 168 13-229 6-193 (431)
367 PRK00098 GTPase RsgA; Reviewed 98.6 1.2E-07 2.7E-12 85.4 9.1 88 250-341 77-165 (298)
368 cd04167 Snu114p Snu114p subfam 98.6 1.2E-07 2.5E-12 81.5 8.4 114 228-345 69-213 (213)
369 cd01885 EF2 EF2 (for archaea a 98.6 1.6E-07 3.5E-12 80.7 9.0 114 228-345 71-222 (222)
370 cd01883 EF1_alpha Eukaryotic e 98.6 7.7E-08 1.7E-12 83.0 7.0 102 228-332 75-194 (219)
371 cd04166 CysN_ATPS CysN_ATPS su 98.6 1E-07 2.2E-12 81.5 7.7 101 229-333 76-184 (208)
372 TIGR00485 EF-Tu translation el 98.6 2.7E-07 5.9E-12 86.7 11.2 115 228-346 73-204 (394)
373 PF00735 Septin: Septin; Inte 98.6 6.7E-07 1.5E-11 79.6 12.8 70 13-95 4-73 (281)
374 COG4917 EutP Ethanolamine util 98.6 2.6E-08 5.5E-13 74.8 3.1 129 15-229 3-136 (148)
375 KOG0084|consensus 98.6 8.9E-08 1.9E-12 77.9 6.3 69 209-279 39-107 (205)
376 KOG0094|consensus 98.6 2.1E-07 4.5E-12 75.6 8.3 63 220-282 61-123 (221)
377 KOG0092|consensus 98.6 3E-07 6.4E-12 74.6 8.9 68 210-279 36-103 (200)
378 TIGR03598 GTPase_YsxC ribosome 98.6 1.1E-07 2.5E-12 79.2 6.5 98 231-332 65-179 (179)
379 PRK09554 feoB ferrous iron tra 98.6 4.9E-07 1.1E-11 91.1 11.9 109 228-343 48-168 (772)
380 cd04105 SR_beta Signal recogni 98.6 3.2E-07 7E-12 78.1 8.6 112 229-340 47-202 (203)
381 KOG0099|consensus 98.5 2E-08 4.4E-13 85.0 0.3 121 225-345 197-371 (379)
382 COG1703 ArgK Putative periplas 98.5 2.6E-06 5.5E-11 74.4 13.0 84 252-343 163-254 (323)
383 PF08477 Miro: Miro-like prote 98.5 2.1E-07 4.6E-12 71.9 5.7 66 231-297 51-119 (119)
384 cd01900 YchF YchF subfamily. 98.5 2.6E-07 5.5E-12 81.7 6.3 23 16-38 1-23 (274)
385 PRK09601 GTP-binding protein Y 98.5 5.1E-07 1.1E-11 82.4 8.2 24 14-37 3-26 (364)
386 PLN00043 elongation factor 1-a 98.5 1.2E-06 2.7E-11 83.2 11.0 103 227-333 82-203 (447)
387 cd01858 NGP_1 NGP-1. Autoanti 98.5 7.7E-07 1.7E-11 72.5 8.3 90 250-342 5-94 (157)
388 TIGR03597 GTPase_YqeH ribosome 98.5 5.6E-07 1.2E-11 83.3 8.3 95 240-341 50-151 (360)
389 CHL00071 tufA elongation facto 98.5 1.1E-06 2.5E-11 82.9 10.5 114 228-345 73-213 (409)
390 KOG1143|consensus 98.5 5.9E-06 1.3E-10 73.8 13.9 108 10-121 164-287 (591)
391 KOG1487|consensus 98.4 1.4E-06 3.1E-11 73.9 9.3 89 13-127 59-155 (358)
392 TIGR00491 aIF-2 translation in 98.4 3.6E-07 7.7E-12 89.3 6.4 90 232-335 71-160 (590)
393 KOG1489|consensus 98.4 1.6E-06 3.5E-11 75.9 9.6 107 232-341 246-365 (366)
394 PRK05124 cysN sulfate adenylyl 98.4 9.5E-07 2.1E-11 84.7 8.8 104 228-334 105-216 (474)
395 PF04548 AIG1: AIG1 family; I 98.4 7E-07 1.5E-11 76.6 7.2 84 14-120 1-95 (212)
396 TIGR02034 CysN sulfate adenyly 98.4 1.2E-06 2.5E-11 82.6 9.2 102 229-333 79-187 (406)
397 COG0012 Predicted GTPase, prob 98.4 6E-07 1.3E-11 80.9 6.6 89 14-120 3-109 (372)
398 cd00066 G-alpha G protein alph 98.4 7.3E-07 1.6E-11 81.1 6.4 40 82-121 158-197 (317)
399 KOG0461|consensus 98.4 3.1E-06 6.6E-11 74.9 9.7 100 9-124 3-109 (522)
400 KOG0077|consensus 98.3 6.2E-07 1.3E-11 70.9 4.8 116 225-342 59-192 (193)
401 cd01849 YlqF_related_GTPase Yl 98.3 1.9E-06 4E-11 70.1 7.9 83 255-342 1-84 (155)
402 KOG0705|consensus 98.3 4.5E-07 9.8E-12 84.4 4.6 151 10-230 27-180 (749)
403 smart00275 G_alpha G protein a 98.3 9.6E-07 2.1E-11 81.0 6.8 52 66-121 169-220 (342)
404 TIGR00993 3a0901s04IAP86 chlor 98.3 2.9E-06 6.3E-11 82.0 9.8 100 13-136 118-229 (763)
405 COG0481 LepA Membrane GTPase L 98.3 1.3E-06 2.7E-11 80.4 6.9 165 13-234 9-181 (603)
406 cd01857 HSR1_MMR1 HSR1/MMR1. 98.3 1.1E-06 2.3E-11 70.3 5.5 23 15-37 85-107 (141)
407 PF03308 ArgK: ArgK protein; 98.3 1.9E-06 4.2E-11 74.1 6.9 83 252-342 141-229 (266)
408 cd01876 YihA_EngB The YihA (En 98.3 3.6E-06 7.9E-11 68.8 8.3 108 231-342 46-170 (170)
409 PLN03126 Elongation factor Tu; 98.3 5.6E-06 1.2E-10 79.2 10.7 112 228-343 142-280 (478)
410 cd01858 NGP_1 NGP-1. Autoanti 98.3 2.2E-06 4.8E-11 69.8 6.5 26 12-37 101-126 (157)
411 PRK04004 translation initiatio 98.2 2.5E-06 5.5E-11 83.6 7.4 97 232-342 73-169 (586)
412 COG0486 ThdF Predicted GTPase 98.2 5.1E-06 1.1E-10 76.9 8.8 111 225-345 260-378 (454)
413 KOG0460|consensus 98.2 9.8E-06 2.1E-10 71.6 10.1 117 232-352 119-254 (449)
414 cd04178 Nucleostemin_like Nucl 98.2 2.3E-06 5.1E-11 70.6 5.9 25 13-37 117-141 (172)
415 COG5258 GTPBP1 GTPase [General 98.2 3.7E-05 8E-10 69.2 13.2 105 9-122 113-240 (527)
416 cd01856 YlqF YlqF. Proteins o 98.2 4.9E-06 1.1E-10 68.8 7.1 88 248-343 14-101 (171)
417 PTZ00141 elongation factor 1- 98.2 7.4E-06 1.6E-10 78.0 9.0 112 227-341 82-223 (446)
418 PRK05506 bifunctional sulfate 98.2 7.3E-06 1.6E-10 81.8 9.0 103 228-333 102-211 (632)
419 PF03193 DUF258: Protein of un 98.1 2.8E-06 6.1E-11 68.5 4.7 24 14-37 36-59 (161)
420 cd01859 MJ1464 MJ1464. This f 98.1 5.7E-06 1.2E-10 67.3 6.3 26 12-37 100-125 (156)
421 PRK12288 GTPase RsgA; Reviewed 98.1 5E-06 1.1E-10 76.3 6.1 23 15-37 207-229 (347)
422 COG3276 SelB Selenocysteine-sp 98.1 3.2E-06 7E-11 77.4 4.3 155 14-238 1-161 (447)
423 cd01857 HSR1_MMR1 HSR1/MMR1. 98.1 1.1E-05 2.4E-10 64.4 7.0 76 249-330 7-84 (141)
424 cd01856 YlqF YlqF. Proteins o 98.1 7.3E-06 1.6E-10 67.8 6.1 27 12-38 114-140 (171)
425 PRK01889 GTPase RsgA; Reviewed 98.1 1.6E-05 3.4E-10 73.5 8.9 84 250-339 109-193 (356)
426 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.1 1.4E-05 2.9E-10 66.8 7.6 73 226-299 49-122 (182)
427 COG1217 TypA Predicted membran 98.1 5E-05 1.1E-09 70.0 11.4 122 225-350 63-202 (603)
428 PRK09563 rbgA GTPase YlqF; Rev 98.1 1.1E-05 2.3E-10 72.6 7.0 26 12-37 120-145 (287)
429 TIGR03596 GTPase_YlqF ribosome 98.1 8.7E-06 1.9E-10 72.7 6.4 26 12-37 117-142 (276)
430 cd01855 YqeH YqeH. YqeH is an 98.0 6.5E-06 1.4E-10 69.3 5.2 25 13-37 127-151 (190)
431 TIGR03596 GTPase_YlqF ribosome 98.0 1.5E-05 3.2E-10 71.3 7.4 91 247-345 15-105 (276)
432 KOG0467|consensus 98.0 2E-05 4.3E-10 76.5 8.5 107 10-125 6-112 (887)
433 TIGR00064 ftsY signal recognit 98.0 9.7E-05 2.1E-09 65.6 12.5 94 230-335 155-260 (272)
434 KOG0085|consensus 98.0 1E-07 2.2E-12 79.5 -6.0 120 227-346 196-352 (359)
435 COG2895 CysN GTPases - Sulfate 98.0 5.5E-05 1.2E-09 67.4 10.1 104 225-332 81-192 (431)
436 KOG0070|consensus 98.0 2.1E-05 4.6E-10 63.7 6.9 159 178-345 13-180 (181)
437 KOG0410|consensus 98.0 8.2E-06 1.8E-10 71.7 4.5 99 12-135 177-284 (410)
438 PRK10416 signal recognition pa 98.0 0.00023 5.1E-09 64.6 14.1 94 229-334 196-301 (318)
439 cd04131 Rnd Rnd subfamily. Th 98.0 3.9E-05 8.4E-10 63.9 8.3 73 227-300 46-119 (178)
440 PRK13796 GTPase YqeH; Provisio 98.0 3.7E-05 7.9E-10 71.4 8.8 82 254-342 70-158 (365)
441 KOG1954|consensus 98.0 4.4E-05 9.5E-10 68.4 8.7 27 15-41 60-86 (532)
442 cd01875 RhoG RhoG subfamily. 98.0 3.1E-05 6.8E-10 65.2 7.7 73 227-300 48-121 (191)
443 COG5019 CDC3 Septin family pro 97.9 2.3E-05 5E-10 70.4 7.0 72 11-96 21-93 (373)
444 cd04168 TetM_like Tet(M)-like 97.9 4.5E-05 9.7E-10 66.5 8.7 69 228-300 62-130 (237)
445 KOG1547|consensus 97.9 2.3E-05 5E-10 66.0 6.2 68 13-95 46-114 (336)
446 KOG2655|consensus 97.9 2.7E-05 5.8E-10 70.5 6.9 71 12-96 20-90 (366)
447 KOG0088|consensus 97.9 1.3E-05 2.9E-10 62.8 4.3 53 228-280 60-112 (218)
448 KOG2486|consensus 97.9 2.7E-05 5.7E-10 67.2 6.3 27 11-37 134-160 (320)
449 PRK09563 rbgA GTPase YlqF; Rev 97.9 3.7E-05 7.9E-10 69.1 7.5 90 248-345 19-108 (287)
450 COG1161 Predicted GTPases [Gen 97.9 2.2E-05 4.8E-10 71.5 5.9 28 11-38 130-157 (322)
451 cd01886 EF-G Elongation factor 97.9 3.6E-05 7.7E-10 68.4 6.9 97 228-328 62-160 (270)
452 KOG0463|consensus 97.9 0.00035 7.5E-09 62.8 12.9 108 11-120 131-256 (641)
453 KOG0093|consensus 97.9 2E-05 4.4E-10 61.1 4.5 56 225-280 65-120 (193)
454 cd01851 GBP Guanylate-binding 97.9 7.9E-05 1.7E-09 64.3 8.8 90 11-121 5-104 (224)
455 TIGR00092 GTP-binding protein 97.9 3.7E-05 8E-10 70.4 7.0 89 14-120 3-109 (368)
456 cd04133 Rop_like Rop subfamily 97.9 3.6E-05 7.8E-10 63.9 6.4 72 228-300 47-119 (176)
457 cd04120 Rab12 Rab12 subfamily. 97.9 3.1E-05 6.7E-10 65.8 6.0 51 228-278 47-97 (202)
458 cd00882 Ras_like_GTPase Ras-li 97.9 5.1E-05 1.1E-09 60.3 7.0 112 229-340 44-157 (157)
459 cd04121 Rab40 Rab40 subfamily. 97.8 3.8E-05 8.1E-10 64.6 6.3 53 227-279 52-104 (189)
460 PRK09866 hypothetical protein; 97.8 4.5E-05 9.7E-10 73.8 7.4 106 85-233 230-347 (741)
461 smart00176 RAN Ran (Ras-relate 97.8 5.1E-05 1.1E-09 64.3 6.9 116 227-345 41-156 (200)
462 cd01849 YlqF_related_GTPase Yl 97.8 4E-05 8.7E-10 62.2 6.1 26 12-37 99-124 (155)
463 PF00448 SRP54: SRP54-type pro 97.8 0.00018 3.9E-09 60.7 10.1 21 15-35 3-23 (196)
464 cd04169 RF3 RF3 subfamily. Pe 97.8 9.2E-05 2E-09 65.7 8.7 70 228-301 69-138 (267)
465 COG1162 Predicted GTPases [Gen 97.8 3E-05 6.5E-10 68.5 5.1 22 15-36 166-187 (301)
466 cd01881 Obg_like The Obg-like 97.8 2.5E-05 5.5E-10 64.5 4.5 154 18-230 1-168 (176)
467 PRK14974 cell division protein 97.8 0.00026 5.6E-09 64.6 10.7 93 231-335 224-322 (336)
468 COG5256 TEF1 Translation elong 97.7 7.9E-05 1.7E-09 68.0 7.1 107 225-333 80-201 (428)
469 PRK13796 GTPase YqeH; Provisio 97.7 4.7E-05 1E-09 70.7 5.8 25 13-37 160-184 (365)
470 CHL00189 infB translation init 97.7 8.6E-05 1.9E-09 74.3 7.5 111 228-342 293-409 (742)
471 COG1084 Predicted GTPase [Gene 97.7 0.00012 2.6E-09 64.9 7.5 128 215-345 199-338 (346)
472 KOG1491|consensus 97.7 9.2E-05 2E-09 65.7 6.8 103 9-121 16-127 (391)
473 PTZ00099 rab6; Provisional 97.7 8.7E-05 1.9E-09 61.6 6.4 121 228-348 27-147 (176)
474 cd01854 YjeQ_engC YjeQ/EngC. 97.7 3.6E-05 7.9E-10 69.1 4.3 82 104-231 74-156 (287)
475 PRK12289 GTPase RsgA; Reviewed 97.7 5.9E-05 1.3E-09 69.3 5.6 86 100-231 81-167 (352)
476 KOG0073|consensus 97.7 8.7E-05 1.9E-09 58.8 5.6 119 227-345 57-180 (185)
477 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 97.7 8.3E-05 1.8E-09 64.1 6.1 73 227-300 46-119 (222)
478 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 97.7 9.6E-05 2.1E-09 64.0 6.3 73 226-299 57-130 (232)
479 COG1162 Predicted GTPases [Gen 97.7 0.00036 7.7E-09 61.8 9.8 93 248-343 74-167 (301)
480 cd04170 EF-G_bact Elongation f 97.7 4.8E-05 1E-09 67.7 4.5 112 228-345 62-175 (268)
481 PF00009 GTP_EFTU: Elongation 97.7 9.6E-05 2.1E-09 62.1 6.0 115 226-344 66-188 (188)
482 TIGR03597 GTPase_YqeH ribosome 97.7 6E-05 1.3E-09 69.9 5.1 24 14-37 155-178 (360)
483 cd00881 GTP_translation_factor 97.7 0.0001 2.2E-09 61.5 6.1 112 229-344 61-188 (189)
484 PRK10867 signal recognition pa 97.6 0.0008 1.7E-08 63.5 12.0 86 230-325 184-275 (433)
485 cd03112 CobW_like The function 97.6 0.00028 6E-09 57.4 7.8 22 16-37 3-24 (158)
486 cd04104 p47_IIGP_like p47 (47- 97.6 0.00027 5.8E-09 59.8 8.0 110 231-347 53-188 (197)
487 cd01874 Cdc42 Cdc42 subfamily. 97.6 0.00015 3.3E-09 60.1 6.1 73 228-301 47-120 (175)
488 TIGR03156 GTP_HflX GTP-binding 97.6 8.3E-05 1.8E-09 68.6 4.9 146 13-230 189-343 (351)
489 PRK00098 GTPase RsgA; Reviewed 97.6 8.1E-05 1.8E-09 67.2 4.7 81 106-231 78-159 (298)
490 cd04176 Rap2 Rap2 subgroup. T 97.6 0.00012 2.6E-09 59.7 5.3 115 228-342 47-162 (163)
491 cd04107 Rab32_Rab38 Rab38/Rab3 97.6 0.00011 2.4E-09 62.3 5.2 55 228-282 48-102 (201)
492 PLN03071 GTP-binding nuclear p 97.5 0.00025 5.3E-09 61.1 6.9 116 228-346 60-175 (219)
493 cd04141 Rit_Rin_Ric Rit/Rin/Ri 97.5 0.00015 3.4E-09 59.8 5.4 52 228-279 48-99 (172)
494 COG3276 SelB Selenocysteine-sp 97.5 0.00043 9.3E-09 63.8 8.6 108 231-343 51-162 (447)
495 TIGR00484 EF-G translation elo 97.5 0.00019 4.2E-09 72.4 7.0 96 228-329 73-172 (689)
496 TIGR00959 ffh signal recogniti 97.5 0.0014 3.1E-08 61.8 12.3 92 230-333 183-280 (428)
497 cd04124 RabL2 RabL2 subfamily. 97.5 0.00018 4E-09 58.6 5.4 116 227-346 46-161 (161)
498 cd04136 Rap_like Rap-like subf 97.5 0.00017 3.7E-09 58.7 5.3 115 228-342 47-162 (163)
499 COG4917 EutP Ethanolamine util 97.5 0.00012 2.7E-09 55.3 3.8 99 234-341 41-144 (148)
500 cd04128 Spg1 Spg1p. Spg1p (se 97.5 0.00015 3.2E-09 60.6 4.9 117 228-345 47-168 (182)
No 1
>KOG0094|consensus
Probab=100.00 E-value=6.8e-35 Score=232.53 Aligned_cols=185 Identities=83% Similarity=1.202 Sum_probs=163.0
Q ss_pred CCCCCCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec
Q psy15725 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE 81 (355)
Q Consensus 2 ~~~~~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 81 (355)
+....++.+++.+||+++|+.+||||||++||.. +.++.+|++|||++|....+.+.
T Consensus 11 ~~~~~~~~~~k~~KlVflGdqsVGKTslItRf~y-----------------------d~fd~~YqATIGiDFlskt~~l~ 67 (221)
T KOG0094|consen 11 QTMATFGAPLKKYKLVFLGDQSVGKTSLITRFMY-----------------------DKFDNTYQATIGIDFLSKTMYLE 67 (221)
T ss_pred HhccccCccceEEEEEEEccCccchHHHHHHHHH-----------------------hhhcccccceeeeEEEEEEEEEc
Confidence 4455678889999999999999999999999999 66677778888999999999999
Q ss_pred CcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccc
Q psy15725 82 DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHH 161 (355)
Q Consensus 82 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (355)
+..+++++|||+||++|+.+.+.|+++++++|+|||+++..||++...|++...+.+++
T Consensus 68 d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs--------------------- 126 (221)
T KOG0094|consen 68 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGS--------------------- 126 (221)
T ss_pred CcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCC---------------------
Confidence 99999999999999999999999999999999999999999999999998877543110
Q ss_pred cCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcc
Q psy15725 162 ANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQE 241 (355)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~ 241 (355)
T Consensus 127 -------------------------------------------------------------------------------- 126 (221)
T KOG0094|consen 127 -------------------------------------------------------------------------------- 126 (221)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEE
Q psy15725 242 RFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFI 321 (355)
Q Consensus 242 ~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 321 (355)
.++-|+||+||.||.+++++..+++...++.++..|.
T Consensus 127 -------------------------------------------~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~ 163 (221)
T KOG0094|consen 127 -------------------------------------------DDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFI 163 (221)
T ss_pred -------------------------------------------CceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEE
Confidence 2345778999999999999999999989999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHcCCCCCCCCCCC
Q psy15725 322 ETSAKAGYNVKQLFRRVAAALPGMDSTENKPP 353 (355)
Q Consensus 322 ~~SA~~~~gv~~l~~~l~~~i~~~~~~~~~~~ 353 (355)
++||+.|.||.++|..|...++.....+..++
T Consensus 164 etsak~g~NVk~lFrrIaa~l~~~~~~~~~~~ 195 (221)
T KOG0094|consen 164 ETSAKAGENVKQLFRRIAAALPGMEVLEILSK 195 (221)
T ss_pred EecccCCCCHHHHHHHHHHhccCccccccccc
Confidence 99999999999999999999998866554443
No 2
>KOG0084|consensus
Probab=100.00 E-value=1.9e-34 Score=231.10 Aligned_cols=172 Identities=43% Similarity=0.711 Sum_probs=153.4
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
-..+||+++|++|||||||+.||.. +.+.+++..|+|++|.-+++.++++.+.+++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~-----------------------~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIW 63 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKD-----------------------DTFTESYISTIGVDFKIRTVELDGKTIKLQIW 63 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhcc-----------------------CCcchhhcceeeeEEEEEEeeecceEEEEEee
Confidence 3579999999999999999999999 66677778899999999999999999999999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
||+||++|+.+...+|++++|||+|||+++.+||+++..|+.++++.
T Consensus 64 DTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~--------------------------------- 110 (205)
T KOG0084|consen 64 DTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRY--------------------------------- 110 (205)
T ss_pred eccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhh---------------------------------
Confidence 99999999999999999999999999999999999998888887542
Q ss_pred ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725 171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY 250 (355)
Q Consensus 171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~ 250 (355)
T Consensus 111 -------------------------------------------------------------------------------- 110 (205)
T KOG0084|consen 111 -------------------------------------------------------------------------------- 110 (205)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcE-EEEecCCCCC
Q psy15725 251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGY 329 (355)
Q Consensus 251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~SA~~~~ 329 (355)
..+++|.++|+||+|+.+.+.+..+++..++...+++ ++++|||++.
T Consensus 111 --------------------------------~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~ 158 (205)
T KOG0084|consen 111 --------------------------------ASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDST 158 (205)
T ss_pred --------------------------------ccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCcc
Confidence 1134788999999999888999999999999999998 9999999999
Q ss_pred CHHHHHHHHHHHcCCCCCCCC
Q psy15725 330 NVKQLFRRVAAALPGMDSTEN 350 (355)
Q Consensus 330 gv~~l~~~l~~~i~~~~~~~~ 350 (355)
||+++|..|+..+..+.....
T Consensus 159 NVe~~F~~la~~lk~~~~~~~ 179 (205)
T KOG0084|consen 159 NVEDAFLTLAKELKQRKGLHV 179 (205)
T ss_pred CHHHHHHHHHHHHHHhcccCC
Confidence 999999999999886654433
No 3
>KOG0092|consensus
Probab=100.00 E-value=2e-32 Score=218.56 Aligned_cols=172 Identities=44% Similarity=0.814 Sum_probs=151.0
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
..++||+++|+.+||||||+-|+..++|. ....||+|..|..+.+.++...+.+.||
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~-----------------------e~~e~TIGaaF~tktv~~~~~~ikfeIW 59 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFH-----------------------ENIEPTIGAAFLTKTVTVDDNTIKFEIW 59 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccc-----------------------cccccccccEEEEEEEEeCCcEEEEEEE
Confidence 46799999999999999999999995554 4446778999999999999999999999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
||+|+++|..+.+.|||+++++|+|||+++.+||..++.|..++.+.
T Consensus 60 DTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~--------------------------------- 106 (200)
T KOG0092|consen 60 DTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQ--------------------------------- 106 (200)
T ss_pred EcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhh---------------------------------
Confidence 99999999999999999999999999999999999888888777542
Q ss_pred ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725 171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY 250 (355)
Q Consensus 171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~ 250 (355)
T Consensus 107 -------------------------------------------------------------------------------- 106 (200)
T KOG0092|consen 107 -------------------------------------------------------------------------------- 106 (200)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCC
Q psy15725 251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 330 (355)
Q Consensus 251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~g 330 (355)
..+++-|.||+||.||.+.+++..+++..++...+..++++|||+|.|
T Consensus 107 --------------------------------~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~N 154 (200)
T KOG0092|consen 107 --------------------------------ASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGEN 154 (200)
T ss_pred --------------------------------CCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccC
Confidence 113455667788888777788999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCC
Q psy15725 331 VKQLFRRVAAALPGMDSTEN 350 (355)
Q Consensus 331 v~~l~~~l~~~i~~~~~~~~ 350 (355)
|+++|..|.+.++..+.++.
T Consensus 155 v~~if~~Ia~~lp~~~~~~~ 174 (200)
T KOG0092|consen 155 VNEIFQAIAEKLPCSDPQER 174 (200)
T ss_pred HHHHHHHHHHhccCcccccc
Confidence 99999999999998876655
No 4
>KOG0078|consensus
Probab=99.97 E-value=5.3e-32 Score=220.43 Aligned_cols=165 Identities=45% Similarity=0.769 Sum_probs=151.2
Q ss_pred CCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEE
Q psy15725 6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV 85 (355)
Q Consensus 6 ~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 85 (355)
+-...-..+||+++|++|||||||+.||.. +.+...+..|+|++|..+.+.++++.+
T Consensus 5 ~~~~~d~~~kvlliGDs~vGKt~~l~rf~d-----------------------~~f~~~~~sTiGIDFk~kti~l~g~~i 61 (207)
T KOG0078|consen 5 AKEDYDYLFKLLLIGDSGVGKTCLLLRFSD-----------------------DSFNTSFISTIGIDFKIKTIELDGKKI 61 (207)
T ss_pred ccCCcceEEEEEEECCCCCchhHhhhhhhh-----------------------ccCcCCccceEEEEEEEEEEEeCCeEE
Confidence 333555679999999999999999999998 666777788999999999999999999
Q ss_pred EEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcc
Q psy15725 86 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165 (355)
Q Consensus 86 ~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (355)
.+++|||+||++|+.+...|+++|+++++|||+++..||+++..|++.++.+.
T Consensus 62 ~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a--------------------------- 114 (207)
T KOG0078|consen 62 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHA--------------------------- 114 (207)
T ss_pred EEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhC---------------------------
Confidence 99999999999999999999999999999999999999999999999998653
Q ss_pred ccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEE
Q psy15725 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234 (355)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i 234 (355)
...+|++|||||+|+...|.++.++++++|.++++.|.++||+++.|+++.++.+
T Consensus 115 --------------~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~L 169 (207)
T KOG0078|consen 115 --------------SDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSL 169 (207)
T ss_pred --------------CCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHH
Confidence 3489999999999999999999999999999999999999999999998765544
No 5
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.97 E-value=1.7e-30 Score=218.29 Aligned_cols=173 Identities=33% Similarity=0.581 Sum_probs=140.7
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
..+||+++|.+|||||||+.+|..+.+. ..+.++++.++....+.+++..+.+++||
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~-----------------------~~~~~t~~~~~~~~~i~~~~~~~~l~iwD 61 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTE-----------------------SPYGYNMGIDYKTTTILLDGRRVKLQLWD 61 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC-----------------------CCCCCcceeEEEEEEEEECCEEEEEEEEe
Confidence 5699999999999999999999985543 33445667777777777888889999999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW 171 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (355)
|+|+++|..++..+++.+|++|+|||++++.+|+++..|++++...
T Consensus 62 t~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~---------------------------------- 107 (189)
T cd04121 62 TSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEH---------------------------------- 107 (189)
T ss_pred CCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh----------------------------------
Confidence 9999999999999999999999999999999999998888776421
Q ss_pred cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725 172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI 251 (355)
Q Consensus 172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~ 251 (355)
T Consensus 108 -------------------------------------------------------------------------------- 107 (189)
T cd04121 108 -------------------------------------------------------------------------------- 107 (189)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725 252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 331 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv 331 (355)
. .+.|+++|+||.|+...+.+..+++..+++..++++++|||++|.||
T Consensus 108 -------------------------------~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V 155 (189)
T cd04121 108 -------------------------------A-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNI 155 (189)
T ss_pred -------------------------------C-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCH
Confidence 0 23566666666666545566677788888888999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCCC
Q psy15725 332 KQLFRRVAAALPGMDSTENKPP 353 (355)
Q Consensus 332 ~~l~~~l~~~i~~~~~~~~~~~ 353 (355)
+++|++|++.+.....+...+|
T Consensus 156 ~~~F~~l~~~i~~~~~~~~~~~ 177 (189)
T cd04121 156 TESFTELARIVLMRHGRPPQSP 177 (189)
T ss_pred HHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999998886665544443
No 6
>KOG0098|consensus
Probab=99.97 E-value=2.1e-31 Score=210.81 Aligned_cols=158 Identities=41% Similarity=0.748 Sum_probs=145.8
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+.+|+.++|+.|||||||+-||+.+.|.+. ...|+|+++..+.++++++.+++++|
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~-----------------------hd~TiGvefg~r~~~id~k~IKlqiw 60 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPV-----------------------HDLTIGVEFGARMVTIDGKQIKLQIW 60 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCcccc-----------------------ccceeeeeeceeEEEEcCceEEEEEE
Confidence 3789999999999999999999999665444 45678999999999999999999999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
||+|++.|+.++..+|+.+.++|+|||++++++|..+..|+.+++++.
T Consensus 61 DtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~-------------------------------- 108 (216)
T KOG0098|consen 61 DTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHS-------------------------------- 108 (216)
T ss_pred ecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhc--------------------------------
Confidence 999999999999999999999999999999999999999999998753
Q ss_pred ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEE
Q psy15725 171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRL 232 (355)
Q Consensus 171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~ 232 (355)
..++.++|+|||+|+...+.+..+++++++++.+..+.++|++++.++++.+.
T Consensus 109 ---------~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~ 161 (216)
T KOG0098|consen 109 ---------NENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI 161 (216)
T ss_pred ---------CCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence 34899999999999999999999999999999999999999999999987653
No 7
>KOG0394|consensus
Probab=99.97 E-value=2e-30 Score=204.97 Aligned_cols=175 Identities=35% Similarity=0.623 Sum_probs=147.8
Q ss_pred CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ 88 (355)
Q Consensus 9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 88 (355)
....-+||.++|++|||||||+|++++++| ...+..|||.+|..+.+.++++.+.++
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF-----------------------~~qykaTIgadFltKev~Vd~~~vtlQ 61 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKF-----------------------SQQYKATIGADFLTKEVQVDDRSVTLQ 61 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHH-----------------------HHHhccccchhheeeEEEEcCeEEEEE
Confidence 334558999999999999999999999555 444566779999999999999999999
Q ss_pred EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725 89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168 (355)
Q Consensus 89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (355)
+|||+|+++|+.+...++|++|.-++|||++++.||+++..|.++....+++
T Consensus 62 iWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~---------------------------- 113 (210)
T KOG0394|consen 62 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASP---------------------------- 113 (210)
T ss_pred EEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCC----------------------------
Confidence 9999999999999999999999999999999999999999999988643211
Q ss_pred ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP 248 (355)
Q Consensus 169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~ 248 (355)
...
T Consensus 114 ---------~~P-------------------------------------------------------------------- 116 (210)
T KOG0394|consen 114 ---------QDP-------------------------------------------------------------------- 116 (210)
T ss_pred ---------CCC--------------------------------------------------------------------
Confidence 111
Q ss_pred ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCC--cccCCHHHHHHHHhhcC-cEEEEecC
Q psy15725 249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD--KRQVSTEEGERKAKELN-VMFIETSA 325 (355)
Q Consensus 249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~--~~~v~~~~~~~~~~~~~-~~~~~~SA 325 (355)
+.-|.|+++||+|+.. ++.++...+..+++..| +|||++||
T Consensus 117 ------------------------------------e~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSA 160 (210)
T KOG0394|consen 117 ------------------------------------ETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSA 160 (210)
T ss_pred ------------------------------------CcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecc
Confidence 3456777777777643 37888888989887766 79999999
Q ss_pred CCCCCHHHHHHHHHHHcCCCCC
Q psy15725 326 KAGYNVKQLFRRVAAALPGMDS 347 (355)
Q Consensus 326 ~~~~gv~~l~~~l~~~i~~~~~ 347 (355)
|.+.||+++|+.+++.......
T Consensus 161 K~~~NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 161 KEATNVDEAFEEIARRALANED 182 (210)
T ss_pred cccccHHHHHHHHHHHHHhccc
Confidence 9999999999999998876543
No 8
>KOG0080|consensus
Probab=99.97 E-value=3.9e-31 Score=203.82 Aligned_cols=161 Identities=40% Similarity=0.696 Sum_probs=145.7
Q ss_pred CCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEE
Q psy15725 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRL 87 (355)
Q Consensus 8 ~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 87 (355)
....-.+||+++|.+|||||+|+-||+.+.+++. ...|+|.+|..+.+.++++..++
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~-----------------------~~~tIGvDFkvk~m~vdg~~~Kl 62 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDL-----------------------HPTTIGVDFKVKVMQVDGKRLKL 62 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCcc-----------------------CCceeeeeEEEEEEEEcCceEEE
Confidence 4556679999999999999999999999555444 44568999999999999999999
Q ss_pred EEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcccc
Q psy15725 88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ 167 (355)
Q Consensus 88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (355)
.+|||+|+++|+.+.+.|++++.++|+|||++.+++|.++..|++++..+
T Consensus 63 aiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Y------------------------------ 112 (209)
T KOG0080|consen 63 AIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLY------------------------------ 112 (209)
T ss_pred EEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhh------------------------------
Confidence 99999999999999999999999999999999999999999999999865
Q ss_pred CccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725 168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVR 231 (355)
Q Consensus 168 ~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~ 231 (355)
...+++..++||||.|..+.|.++.+++..+++++++.|.++||++..+++.++
T Consensus 113 ----------stn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~F 166 (209)
T KOG0080|consen 113 ----------STNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCF 166 (209)
T ss_pred ----------cCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHH
Confidence 344578889999999998889999999999999999999999999988877543
No 9
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.97 E-value=8.9e-30 Score=215.90 Aligned_cols=163 Identities=37% Similarity=0.694 Sum_probs=135.0
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 94 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 94 (355)
.|+++|..|||||||++||..+. +...+.+|++.++..+.+.++++.+.+++|||+|
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~-----------------------f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaG 58 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDT-----------------------FCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAG 58 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCC-----------------------CCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCC
Confidence 58999999999999999999844 4444566778788888888888889999999999
Q ss_pred cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccccc
Q psy15725 95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDD 174 (355)
Q Consensus 95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (355)
+++|..++..+++++|++|+|||++++++|+.+..|+..+...
T Consensus 59 qe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~------------------------------------- 101 (202)
T cd04120 59 QERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY------------------------------------- 101 (202)
T ss_pred chhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-------------------------------------
Confidence 9999999999999999999999999999999998887665321
Q ss_pred ccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccCC
Q psy15725 175 VRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDS 254 (355)
Q Consensus 175 ~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~ 254 (355)
T Consensus 102 -------------------------------------------------------------------------------- 101 (202)
T cd04120 102 -------------------------------------------------------------------------------- 101 (202)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhc-CcEEEEecCCCCCCHHH
Q psy15725 255 TVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL-NVMFIETSAKAGYNVKQ 333 (355)
Q Consensus 255 ~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~SA~~~~gv~~ 333 (355)
...+.|+++|+||+|+...+.+...++..+++.. ++.+++|||++|.||++
T Consensus 102 ----------------------------~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e 153 (202)
T cd04120 102 ----------------------------ASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDE 153 (202)
T ss_pred ----------------------------CCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHH
Confidence 0024667777777777655667677777777664 68999999999999999
Q ss_pred HHHHHHHHcCCC
Q psy15725 334 LFRRVAAALPGM 345 (355)
Q Consensus 334 l~~~l~~~i~~~ 345 (355)
+|++|++.+.+.
T Consensus 154 ~F~~l~~~~~~~ 165 (202)
T cd04120 154 IFLKLVDDILKK 165 (202)
T ss_pred HHHHHHHHHHHh
Confidence 999999988654
No 10
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.97 E-value=1.4e-29 Score=241.79 Aligned_cols=260 Identities=23% Similarity=0.200 Sum_probs=164.5
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
...+|+++|++|||||||+|+|++...... ...+++..+.......+.+ ..+.+||
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v----------------------~~~~gvT~d~~~~~~~~~~--~~~~l~D 92 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVV----------------------EDVPGVTRDRVSYDAEWNG--RRFTVVD 92 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccc----------------------cCCCCCCEeeEEEEEEECC--cEEEEEe
Confidence 346899999999999999999998542111 1122222233333333333 4688999
Q ss_pred cCCccc--------ccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccC
Q psy15725 92 TAGQER--------FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHAN 163 (355)
Q Consensus 92 ~~g~~~--------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (355)
|||.+. +...+..+++.+|++|+|||+++..++.. ..|...++.
T Consensus 93 T~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~--------------------------- 144 (472)
T PRK03003 93 TGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR--------------------------- 144 (472)
T ss_pred CCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---------------------------
Confidence 999763 33345567889999999999999766543 233333322
Q ss_pred ccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceE-------------
Q psy15725 164 SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV------------- 230 (355)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i------------- 230 (355)
.++|+++|+||+|+.... .+....+....+.+ +.+|+.++.+++.+
T Consensus 145 -----------------~~~piilV~NK~Dl~~~~---~~~~~~~~~g~~~~-~~iSA~~g~gi~eL~~~i~~~l~~~~~ 203 (472)
T PRK03003 145 -----------------SGKPVILAANKVDDERGE---ADAAALWSLGLGEP-HPVSALHGRGVGDLLDAVLAALPEVPR 203 (472)
T ss_pred -----------------cCCCEEEEEECccCCccc---hhhHHHHhcCCCCe-EEEEcCCCCCcHHHHHHHHhhcccccc
Confidence 278999999999985321 11111111122222 24555544433221
Q ss_pred --------------------------------------------------------EEEEEeCCCc----------cccc
Q psy15725 231 --------------------------------------------------------RLQLWDTAGQ----------ERFR 244 (355)
Q Consensus 231 --------------------------------------------------------~~~i~D~~g~----------~~~~ 244 (355)
.+.+|||+|. +.+.
T Consensus 204 ~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~ 283 (472)
T PRK03003 204 VGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYA 283 (472)
T ss_pred cccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHH
Confidence 3458899984 2222
Q ss_pred ccc-cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccC--CHHHH-HHHHhhcCcEE
Q psy15725 245 SLI-PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV--STEEG-ERKAKELNVMF 320 (355)
Q Consensus 245 ~~~-~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~-~~~~~~~~~~~ 320 (355)
.+. ..++..+|++++|+|+++..+.++.. ++..+.. .++|+++|+||+|+.+.... ...+. ..+.....+++
T Consensus 284 ~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~ 359 (472)
T PRK03003 284 SLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPR 359 (472)
T ss_pred HHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCE
Confidence 222 23568999999999999998877763 4444444 58999999999999643211 01111 11222234689
Q ss_pred EEecCCCCCCHHHHHHHHHHHcCCCCCC
Q psy15725 321 IETSAKAGYNVKQLFRRVAAALPGMDST 348 (355)
Q Consensus 321 ~~~SA~~~~gv~~l~~~l~~~i~~~~~~ 348 (355)
+++||++|.||+++|+.+.+.+......
T Consensus 360 ~~~SAk~g~gv~~lf~~i~~~~~~~~~~ 387 (472)
T PRK03003 360 VNISAKTGRAVDKLVPALETALESWDTR 387 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999988755443
No 11
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.96 E-value=7.6e-29 Score=207.26 Aligned_cols=176 Identities=26% Similarity=0.481 Sum_probs=139.7
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
+...+||+++|++|||||||++|+..+.+...| .||++..+ ...+.+++..+.+.+
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~-----------------------~pT~~~~~-~~~~~~~~~~~~l~i 57 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENY-----------------------VPTVFENY-TASFEIDTQRIELSL 57 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCcc-----------------------CCceeeee-EEEEEECCEEEEEEE
Confidence 456799999999999999999999996655544 44555444 345677888899999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhhH-HHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (355)
|||+|+++|..+++.+++++|++++|||++++.+|+++ ..|+++++...
T Consensus 58 wDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~------------------------------ 107 (182)
T cd04172 58 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC------------------------------ 107 (182)
T ss_pred EECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC------------------------------
Confidence 99999999999999999999999999999999999997 78999986531
Q ss_pred ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP 248 (355)
Q Consensus 169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~ 248 (355)
+++|++|||||+|+.+...
T Consensus 108 ------------~~~piilVgNK~DL~~~~~------------------------------------------------- 126 (182)
T cd04172 108 ------------PNTKMLLVGCKSDLRTDLT------------------------------------------------- 126 (182)
T ss_pred ------------CCCCEEEEeEChhhhcChh-------------------------------------------------
Confidence 3689999999999732100
Q ss_pred ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCC
Q psy15725 249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKA 327 (355)
Q Consensus 249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~ 327 (355)
....+... ..+.+..+++.++++..++ +|++|||++
T Consensus 127 --------------------------~~~~~~~~-----------------~~~~v~~~~~~~~a~~~~~~~~~E~SAk~ 163 (182)
T cd04172 127 --------------------------TLVELSNH-----------------RQTPVSYDQGANMAKQIGAATYIECSALQ 163 (182)
T ss_pred --------------------------hHHHHHhc-----------------CCCCCCHHHHHHHHHHcCCCEEEECCcCC
Confidence 00001110 1245778889999999996 999999999
Q ss_pred CCC-HHHHHHHHHHHcC
Q psy15725 328 GYN-VKQLFRRVAAALP 343 (355)
Q Consensus 328 ~~g-v~~l~~~l~~~i~ 343 (355)
|.| |+++|+.+++.+.
T Consensus 164 ~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 164 SENSVRDIFHVATLACV 180 (182)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 998 9999999998654
No 12
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=7.8e-29 Score=211.38 Aligned_cols=175 Identities=34% Similarity=0.590 Sum_probs=143.1
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec-CcEEEEEEEec
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDT 92 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~ 92 (355)
+||+++|++|||||||+++|+++.+ ...+.||++.++....+.++ +..+.+.+|||
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~-----------------------~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt 57 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIF-----------------------SQHYKATIGVDFALKVIEWDPNTVVRLQLWDI 57 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-----------------------CCCCCCceeEEEEEEEEEECCCCEEEEEEEEC
Confidence 5899999999999999999999544 34455666777777777777 78899999999
Q ss_pred CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725 93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI 172 (355)
Q Consensus 93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (355)
||++.|..++..+++++|++++|||++++++|+.+..|+..+.....
T Consensus 58 ~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~--------------------------------- 104 (201)
T cd04107 58 AGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVT--------------------------------- 104 (201)
T ss_pred CCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc---------------------------------
Confidence 99999999999999999999999999999999999999887743100
Q ss_pred ccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccccc
Q psy15725 173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIR 252 (355)
Q Consensus 173 ~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~ 252 (355)
T Consensus 105 -------------------------------------------------------------------------------- 104 (201)
T cd04107 105 -------------------------------------------------------------------------------- 104 (201)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC-cEEEEecCCCCCCH
Q psy15725 253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGYNV 331 (355)
Q Consensus 253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~SA~~~~gv 331 (355)
. ....++|+++|+||+|+...+.+..++...+++..+ ++++++||++|.||
T Consensus 105 --------~--------------------~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v 156 (201)
T cd04107 105 --------L--------------------PNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINI 156 (201)
T ss_pred --------c--------------------cCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCH
Confidence 0 000357888888888886556677778888888887 69999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCC
Q psy15725 332 KQLFRRVAAALPGMDSTENKP 352 (355)
Q Consensus 332 ~~l~~~l~~~i~~~~~~~~~~ 352 (355)
+++|++|++.+.+.++....+
T Consensus 157 ~e~f~~l~~~l~~~~~~~~~~ 177 (201)
T cd04107 157 EEAMRFLVKNILANDKNLQQA 177 (201)
T ss_pred HHHHHHHHHHHHHhchhhHhh
Confidence 999999999998776544433
No 13
>KOG0093|consensus
Probab=99.96 E-value=2.4e-29 Score=191.07 Aligned_cols=169 Identities=42% Similarity=0.744 Sum_probs=151.3
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~ 92 (355)
-.|++++|...||||+|+.|+.+ +++...+-+|+|++|..+.+.-..+.+.+++|||
T Consensus 21 mfKlliiGnssvGKTSfl~ry~d-----------------------dSFt~afvsTvGidFKvKTvyr~~kRiklQiwDT 77 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYAD-----------------------DSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDT 77 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhc-----------------------cccccceeeeeeeeEEEeEeeecccEEEEEEEec
Confidence 36999999999999999999998 6677777889999999998877788899999999
Q ss_pred CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725 93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI 172 (355)
Q Consensus 93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (355)
.|+++|+.+.-.++++++++|+|||.+|.+||..++.|.-+|+.+
T Consensus 78 agqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIkty----------------------------------- 122 (193)
T KOG0093|consen 78 AGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTY----------------------------------- 122 (193)
T ss_pred ccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheee-----------------------------------
Confidence 999999999999999999999999999999999999996555210
Q ss_pred ccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccccc
Q psy15725 173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIR 252 (355)
Q Consensus 173 ~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~ 252 (355)
T Consensus 123 -------------------------------------------------------------------------------- 122 (193)
T KOG0093|consen 123 -------------------------------------------------------------------------------- 122 (193)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHH
Q psy15725 253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 332 (355)
Q Consensus 253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~ 332 (355)
++ .+.|||+|+||||+.+++.++.+..+.+++++|+.+|++|||.|.||+
T Consensus 123 -------sw-----------------------~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk 172 (193)
T KOG0093|consen 123 -------SW-----------------------DNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVK 172 (193)
T ss_pred -------ec-----------------------cCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHH
Confidence 01 578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCC
Q psy15725 333 QLFRRVAAALPGMDSTE 349 (355)
Q Consensus 333 ~l~~~l~~~i~~~~~~~ 349 (355)
++|+.++..|-+....+
T Consensus 173 ~~Fe~lv~~Ic~kmses 189 (193)
T KOG0093|consen 173 QVFERLVDIICDKMSES 189 (193)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 99999999987765544
No 14
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.96 E-value=1.7e-28 Score=203.85 Aligned_cols=171 Identities=32% Similarity=0.541 Sum_probs=136.3
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|++|||||||+.|+..+.+... +.||++..+ ...+.+++..+.+.+|||+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~-----------------------~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~ 57 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTD-----------------------YIPTVFDNF-SANVSVDGNTVNLGLWDTA 57 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCC-----------------------CCCcceeee-EEEEEECCEEEEEEEEECC
Confidence 6999999999999999999999665444 445555444 3456677888999999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhH-HHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI 172 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (355)
|+++|..+++.+++++|++|+|||+++++||+++ ..|+.+++...
T Consensus 58 G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~---------------------------------- 103 (176)
T cd04133 58 GQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA---------------------------------- 103 (176)
T ss_pred CCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC----------------------------------
Confidence 9999999999999999999999999999999998 68999886431
Q ss_pred ccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccccc
Q psy15725 173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIR 252 (355)
Q Consensus 173 ~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~ 252 (355)
.++|+++||||+|+.+.+..
T Consensus 104 --------~~~piilvgnK~Dl~~~~~~---------------------------------------------------- 123 (176)
T cd04133 104 --------PNVPIVLVGTKLDLRDDKQY---------------------------------------------------- 123 (176)
T ss_pred --------CCCCEEEEEeChhhccChhh----------------------------------------------------
Confidence 36899999999997431100
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCCCCH
Q psy15725 253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNV 331 (355)
Q Consensus 253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~~gv 331 (355)
. . +....+.+..+++..+++..++ ++++|||++|.||
T Consensus 124 -----------------~---------~----------------~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV 161 (176)
T cd04133 124 -----------------L---------A----------------DHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNV 161 (176)
T ss_pred -----------------h---------h----------------hccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCH
Confidence 0 0 0011245667778888888887 6999999999999
Q ss_pred HHHHHHHHHHcCC
Q psy15725 332 KQLFRRVAAALPG 344 (355)
Q Consensus 332 ~~l~~~l~~~i~~ 344 (355)
+++|+.+++.+..
T Consensus 162 ~~~F~~~~~~~~~ 174 (176)
T cd04133 162 KAVFDAAIKVVLQ 174 (176)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999997643
No 15
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.96 E-value=2.5e-28 Score=206.41 Aligned_cols=177 Identities=28% Similarity=0.509 Sum_probs=138.5
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+.+||+++|++|||||||+.|+..+.+...| .||++..+ ...+.++++.+.+.+||
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~-----------------------~~t~~~~~-~~~~~~~~~~~~l~i~D 57 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEY-----------------------IPTVFDNY-SAQTAVDGRTVSLNLWD 57 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCC-----------------------CCceEeee-EEEEEECCEEEEEEEEE
Confidence 4589999999999999999999996654444 45555444 33456778889999999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
|+|+++|..+++.+++++|++|+|||++++.+|+.+. .|+..+...
T Consensus 58 t~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~--------------------------------- 104 (191)
T cd01875 58 TAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHH--------------------------------- 104 (191)
T ss_pred CCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh---------------------------------
Confidence 9999999999999999999999999999999999996 698877532
Q ss_pred ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725 171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY 250 (355)
Q Consensus 171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~ 250 (355)
..++|+++||||.|+.+.+..
T Consensus 105 ---------~~~~piilvgNK~DL~~~~~~-------------------------------------------------- 125 (191)
T cd01875 105 ---------CPNVPILLVGTKKDLRNDADT-------------------------------------------------- 125 (191)
T ss_pred ---------CCCCCEEEEEeChhhhcChhh--------------------------------------------------
Confidence 137999999999998431100
Q ss_pred ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC-cEEEEecCCCCC
Q psy15725 251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGY 329 (355)
Q Consensus 251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~SA~~~~ 329 (355)
.+.+. +. ..+.+..+++..+++..+ +++++|||++|.
T Consensus 126 -------------------------~~~~~----------------~~-~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~ 163 (191)
T cd01875 126 -------------------------LKKLK----------------EQ-GQAPITPQQGGALAKQIHAVKYLECSALNQD 163 (191)
T ss_pred -------------------------HHHHh----------------hc-cCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 00000 00 123455667888888888 699999999999
Q ss_pred CHHHHHHHHHHHcCCCC
Q psy15725 330 NVKQLFRRVAAALPGMD 346 (355)
Q Consensus 330 gv~~l~~~l~~~i~~~~ 346 (355)
||+++|++|++.+..+.
T Consensus 164 ~v~e~f~~l~~~~~~~~ 180 (191)
T cd01875 164 GVKEVFAEAVRAVLNPT 180 (191)
T ss_pred CHHHHHHHHHHHHhccc
Confidence 99999999999998764
No 16
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.96 E-value=1.5e-28 Score=204.22 Aligned_cols=166 Identities=31% Similarity=0.522 Sum_probs=133.8
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~ 92 (355)
.+||+++|.+|||||||++++..+.+.+.+ .||++..+ ...+.+++..+.+.+|||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~-----------------------~~t~~~~~-~~~~~~~~~~~~l~i~Dt 57 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYH-----------------------DPTIEDAY-KQQARIDNEPALLDILDT 57 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCc-----------------------CCcccceE-EEEEEECCEEEEEEEEeC
Confidence 489999999999999999999996665544 44445333 344567788889999999
Q ss_pred CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725 93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI 172 (355)
Q Consensus 93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (355)
||+++|..++..+++.+|++++|||++++.+|+.+..|+..+...+
T Consensus 58 ~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~---------------------------------- 103 (172)
T cd04141 58 AGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVR---------------------------------- 103 (172)
T ss_pred CCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhc----------------------------------
Confidence 9999999999999999999999999999999998887766553210
Q ss_pred ccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccccc
Q psy15725 173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIR 252 (355)
Q Consensus 173 ~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~ 252 (355)
T Consensus 104 -------------------------------------------------------------------------------- 103 (172)
T cd04141 104 -------------------------------------------------------------------------------- 103 (172)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHH
Q psy15725 253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 332 (355)
Q Consensus 253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~ 332 (355)
...++|+++|+||+|+.+.+.+...++..+++..++++++|||++|.||+
T Consensus 104 ------------------------------~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~ 153 (172)
T cd04141 104 ------------------------------LTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYID 153 (172)
T ss_pred ------------------------------CCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHH
Confidence 00356777777777776666677777888888888999999999999999
Q ss_pred HHHHHHHHHcCCCC
Q psy15725 333 QLFRRVAAALPGMD 346 (355)
Q Consensus 333 ~l~~~l~~~i~~~~ 346 (355)
++|++|++.+.+..
T Consensus 154 ~~f~~l~~~~~~~~ 167 (172)
T cd04141 154 DAFHGLVREIRRKE 167 (172)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887643
No 17
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=2.8e-28 Score=210.13 Aligned_cols=178 Identities=25% Similarity=0.454 Sum_probs=140.7
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
...++||+++|++|||||||+++|..+.|... +.||++.++. ..+.+++..+.+.+
T Consensus 10 ~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~-----------------------y~pTi~~~~~-~~i~~~~~~v~l~i 65 (232)
T cd04174 10 LVMRCKLVLVGDVQCGKTAMLQVLAKDCYPET-----------------------YVPTVFENYT-AGLETEEQRVELSL 65 (232)
T ss_pred ceeeEEEEEECCCCCcHHHHHHHHhcCCCCCC-----------------------cCCceeeeeE-EEEEECCEEEEEEE
Confidence 34689999999999999999999999555544 4455555543 34667888899999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhh-HHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (355)
|||+|++.|..+++.+++++|++++|||++++++|++ +..|+.++....
T Consensus 66 wDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~------------------------------ 115 (232)
T cd04174 66 WDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC------------------------------ 115 (232)
T ss_pred EeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC------------------------------
Confidence 9999999999999999999999999999999999998 488999886431
Q ss_pred ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP 248 (355)
Q Consensus 169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~ 248 (355)
+++|+++||||+|+.....
T Consensus 116 ------------~~~piilVgNK~DL~~~~~------------------------------------------------- 134 (232)
T cd04174 116 ------------PSTRILLIGCKTDLRTDLS------------------------------------------------- 134 (232)
T ss_pred ------------CCCCEEEEEECcccccccc-------------------------------------------------
Confidence 3689999999999732100
Q ss_pred ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCC
Q psy15725 249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKA 327 (355)
Q Consensus 249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~ 327 (355)
. +..+ . + ...+.+..+++..+++..++ +|++|||++
T Consensus 135 ----------------------~----~~~l-------------~---~-~~~~~Vs~~e~~~~a~~~~~~~~~EtSAkt 171 (232)
T cd04174 135 ----------------------T----LMEL-------------S---N-QKQAPISYEQGCALAKQLGAEVYLECSAFT 171 (232)
T ss_pred ----------------------h----hhhh-------------c---c-ccCCcCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 0 0000 0 0 01245777889999999998 799999999
Q ss_pred CC-CHHHHHHHHHHHcCCC
Q psy15725 328 GY-NVKQLFRRVAAALPGM 345 (355)
Q Consensus 328 ~~-gv~~l~~~l~~~i~~~ 345 (355)
|. ||+++|+.+++.+.+.
T Consensus 172 g~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 172 SEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CCcCHHHHHHHHHHHHHHh
Confidence 98 8999999999988764
No 18
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=2.8e-28 Score=203.43 Aligned_cols=173 Identities=26% Similarity=0.499 Sum_probs=137.0
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~ 92 (355)
++||+++|++|||||||+++|..+.++..| .||++..+ ...+.+++..+.+.+|||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~-----------------------~~t~~~~~-~~~~~~~~~~~~l~iwDt 56 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETY-----------------------VPTVFENY-TASFEIDEQRIELSLWDT 56 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCc-----------------------CCceEEEE-EEEEEECCEEEEEEEEEC
Confidence 589999999999999999999996655544 45555444 345667888899999999
Q ss_pred CCcccccccccccccCccEEEEEEECCCcchhhhH-HHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725 93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW 171 (355)
Q Consensus 93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (355)
+|++.|..+++.+++++|++++|||+++++||+++ ..|+.+++...
T Consensus 57 ~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~--------------------------------- 103 (178)
T cd04131 57 SGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC--------------------------------- 103 (178)
T ss_pred CCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC---------------------------------
Confidence 99999999999999999999999999999999995 78999886531
Q ss_pred cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725 172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI 251 (355)
Q Consensus 172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~ 251 (355)
+++|+++||||+|+.+.. .
T Consensus 104 ---------~~~~iilVgnK~DL~~~~----~------------------------------------------------ 122 (178)
T cd04131 104 ---------PNTKVLLVGCKTDLRTDL----S------------------------------------------------ 122 (178)
T ss_pred ---------CCCCEEEEEEChhhhcCh----h------------------------------------------------
Confidence 368999999999973210 0
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCCCC
Q psy15725 252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYN 330 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~~g 330 (355)
. ...+.. . ..+.+..+++.++++..++ ++++|||++|.|
T Consensus 123 -------------------~----~~~~~~----------------~-~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~ 162 (178)
T cd04131 123 -------------------T----LMELSH----------------Q-RQAPVSYEQGCAIAKQLGAEIYLECSAFTSEK 162 (178)
T ss_pred -------------------H----HHHHHh----------------c-CCCCCCHHHHHHHHHHhCCCEEEECccCcCCc
Confidence 0 000111 0 1245777888999999997 899999999995
Q ss_pred -HHHHHHHHHHHcC
Q psy15725 331 -VKQLFRRVAAALP 343 (355)
Q Consensus 331 -v~~l~~~l~~~i~ 343 (355)
|+++|..+++...
T Consensus 163 ~v~~~F~~~~~~~~ 176 (178)
T cd04131 163 SVRDIFHVATMACL 176 (178)
T ss_pred CHHHHHHHHHHHHh
Confidence 9999999998654
No 19
>KOG0087|consensus
Probab=99.96 E-value=7.2e-29 Score=201.00 Aligned_cols=157 Identities=39% Similarity=0.742 Sum_probs=145.4
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
-.-+||+++|+++||||-|+.||.. +.|.-...+|+|.++.++.+.++++.+..+||
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftr-----------------------nEF~~~SksTIGvef~t~t~~vd~k~vkaqIW 68 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTR-----------------------NEFSLESKSTIGVEFATRTVNVDGKTVKAQIW 68 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcc-----------------------cccCcccccceeEEEEeeceeecCcEEEEeee
Confidence 4569999999999999999999999 55666678899999999999999999999999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
||+||++|+.+...+++++-++++|||++++.+|+++..|+.+++.+
T Consensus 69 DTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdh--------------------------------- 115 (222)
T KOG0087|consen 69 DTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDH--------------------------------- 115 (222)
T ss_pred cccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhc---------------------------------
Confidence 99999999999999999999999999999999999999999999764
Q ss_pred ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725 171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVR 231 (355)
Q Consensus 171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~ 231 (355)
...++++++||||+|+.+.+.+..+++..++...+..+.++|+..+.|++..+
T Consensus 116 --------ad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF 168 (222)
T KOG0087|consen 116 --------ADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAF 168 (222)
T ss_pred --------CCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHH
Confidence 34599999999999999999999999999999999999999999988887543
No 20
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.96 E-value=4.1e-28 Score=200.65 Aligned_cols=100 Identities=38% Similarity=0.766 Sum_probs=84.7
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~ 92 (355)
.+||+++|++|||||||++++..+.+... +.+|++.++....+.+++..+.+.+|||
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~-----------------------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt 58 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMAD-----------------------CPHTIGVEFGTRIIEVNGQKIKLQIWDT 58 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCC-----------------------CCcccceeEEEEEEEECCEEEEEEEEEC
Confidence 47999999999999999999998554433 4456666777777777888889999999
Q ss_pred CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
||+++|...+..+++++|++++|||++++++|+.+..|+..+.
T Consensus 59 ~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~ 101 (166)
T cd04122 59 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR 101 (166)
T ss_pred CCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888876653
No 21
>KOG0086|consensus
Probab=99.96 E-value=1.7e-29 Score=193.11 Aligned_cols=157 Identities=41% Similarity=0.727 Sum_probs=145.5
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~ 92 (355)
-+|++++|++|+|||||+++|.. ..|.+...-|+|++|..+.+.+.++.+++++|||
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie-----------------------~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDT 65 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIE-----------------------NKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDT 65 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHH-----------------------hhhcccccceeeeeecceeeeecCcEEEEEEeec
Confidence 47999999999999999999999 5556666778999999999999999999999999
Q ss_pred CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725 93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI 172 (355)
Q Consensus 93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (355)
.|+++|+.....+++++-++++|||++++++|+.+..|+..++...++
T Consensus 66 AGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~-------------------------------- 113 (214)
T KOG0086|consen 66 AGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASP-------------------------------- 113 (214)
T ss_pred ccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCC--------------------------------
Confidence 999999999999999999999999999999999999999999876544
Q ss_pred ccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEE
Q psy15725 173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQ 233 (355)
Q Consensus 173 ~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~ 233 (355)
++.++++|||.|+.+++.++.++...++.+....+.++|+.+|.|+++.++.
T Consensus 114 ---------nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~ 165 (214)
T KOG0086|consen 114 ---------NIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLK 165 (214)
T ss_pred ---------cEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHH
Confidence 7889999999999999999999999999999999999999999999976543
No 22
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.96 E-value=1.2e-27 Score=196.89 Aligned_cols=160 Identities=40% Similarity=0.696 Sum_probs=131.5
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|++|||||||+++++.+.+.+ .+.+|++.++....+.+++..+.+.+||++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~-----------------------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~ 57 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHS-----------------------SHISTIGVDFKMKTIEVDGIKVRIQIWDTA 57 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCC-----------------------CCCCceeeEEEEEEEEECCEEEEEEEEeCC
Confidence 589999999999999999999855443 345666777777777777878899999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID 173 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (355)
|++.+..++..+++.+|++++|||++++++|+.+..|++.+...
T Consensus 58 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~------------------------------------ 101 (161)
T cd04117 58 GQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEY------------------------------------ 101 (161)
T ss_pred CcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHh------------------------------------
Confidence 99999988888999999999999999998998888887665321
Q ss_pred cccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccC
Q psy15725 174 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRD 253 (355)
Q Consensus 174 ~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~ 253 (355)
T Consensus 102 -------------------------------------------------------------------------------- 101 (161)
T cd04117 102 -------------------------------------------------------------------------------- 101 (161)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725 254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333 (355)
Q Consensus 254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~ 333 (355)
...+.|+++|+||.|+...+.+..+++..+++..++++++|||++|.||++
T Consensus 102 -----------------------------~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 152 (161)
T cd04117 102 -----------------------------APEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKE 152 (161)
T ss_pred -----------------------------CCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 113467777777777766666777788888888889999999999999999
Q ss_pred HHHHHHHH
Q psy15725 334 LFRRVAAA 341 (355)
Q Consensus 334 l~~~l~~~ 341 (355)
+|++|++.
T Consensus 153 ~f~~l~~~ 160 (161)
T cd04117 153 SFTRLTEL 160 (161)
T ss_pred HHHHHHhh
Confidence 99999875
No 23
>PTZ00369 Ras-like protein; Provisional
Probab=99.96 E-value=5.7e-28 Score=204.04 Aligned_cols=174 Identities=32% Similarity=0.521 Sum_probs=135.5
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+.+||+++|++|||||||++++..+.+... +.||++..+ .+.+.+++..+.+.+|
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~-----------------------~~~t~~~~~-~~~~~~~~~~~~l~i~ 58 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDE-----------------------YDPTIEDSY-RKQCVIDEETCLLDIL 58 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcC-----------------------cCCchhhEE-EEEEEECCEEEEEEEE
Confidence 3569999999999999999999999655443 344555444 4566678888899999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
||||+++|..++..+++.+|++++|||++++++|+.+..|+..+....
T Consensus 59 Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~-------------------------------- 106 (189)
T PTZ00369 59 DTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVK-------------------------------- 106 (189)
T ss_pred eCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--------------------------------
Confidence 999999999999999999999999999999999998888876653210
Q ss_pred ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725 171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY 250 (355)
Q Consensus 171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~ 250 (355)
..
T Consensus 107 --------~~---------------------------------------------------------------------- 108 (189)
T PTZ00369 107 --------DK---------------------------------------------------------------------- 108 (189)
T ss_pred --------CC----------------------------------------------------------------------
Confidence 00
Q ss_pred ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCC
Q psy15725 251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 330 (355)
Q Consensus 251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~g 330 (355)
.+.|+++|+||+|+.+.+.+...++..+++..+++++++||++|.|
T Consensus 109 ----------------------------------~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~g 154 (189)
T PTZ00369 109 ----------------------------------DRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVN 154 (189)
T ss_pred ----------------------------------CCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCC
Confidence 3466777777777655555555566666777778999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCC
Q psy15725 331 VKQLFRRVAAALPGMDSTENKP 352 (355)
Q Consensus 331 v~~l~~~l~~~i~~~~~~~~~~ 352 (355)
|+++|++|++.+.+..++.+++
T Consensus 155 i~~~~~~l~~~l~~~~~~~~~~ 176 (189)
T PTZ00369 155 VDEAFYELVREIRKYLKEDMPS 176 (189)
T ss_pred HHHHHHHHHHHHHHHhhccchh
Confidence 9999999998887765544433
No 24
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=1.7e-27 Score=205.35 Aligned_cols=104 Identities=29% Similarity=0.627 Sum_probs=90.0
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
..+.+||+++|++|||||||+++++.+.+ ...+.+|++.++....+..++..+.+.+
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f-----------------------~~~~~~tig~~~~~~~~~~~~~~~~l~i 66 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF-----------------------EKKYEPTIGVEVHPLDFFTNCGKIRFYC 66 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCC-----------------------CCccCCccceeEEEEEEEECCeEEEEEE
Confidence 37789999999999999999999998544 4445667777877777777777899999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT 136 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~ 136 (355)
|||+|++.|..++..+++.+|++|+|||++++.+|+.+..|+..+..
T Consensus 67 ~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~ 113 (219)
T PLN03071 67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 113 (219)
T ss_pred EECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999889887753
No 25
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.96 E-value=1.7e-27 Score=196.73 Aligned_cols=163 Identities=43% Similarity=0.756 Sum_probs=131.5
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|++|||||||++++.++.+. ..+.+|++.++....+..++..+.+.+|||+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~-----------------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~ 58 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFT-----------------------SAFVSTVGIDFKVKTVFRNDKRVKLQIWDTA 58 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-----------------------CCCCCceeeEEEEEEEEECCEEEEEEEEECC
Confidence 79999999999999999999995543 3445566666666666667778899999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID 173 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (355)
|++++..++..+++.+|++++|||++++++|+.+..|++.+...
T Consensus 59 g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~------------------------------------ 102 (165)
T cd01865 59 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY------------------------------------ 102 (165)
T ss_pred ChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHh------------------------------------
Confidence 99999989999999999999999999988888888887665311
Q ss_pred cccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccC
Q psy15725 174 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRD 253 (355)
Q Consensus 174 ~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~ 253 (355)
T Consensus 103 -------------------------------------------------------------------------------- 102 (165)
T cd01865 103 -------------------------------------------------------------------------------- 102 (165)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725 254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333 (355)
Q Consensus 254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~ 333 (355)
...+.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.||++
T Consensus 103 -----------------------------~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 153 (165)
T cd01865 103 -----------------------------SWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQ 153 (165)
T ss_pred -----------------------------CCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence 013467777778887765555666666777777788999999999999999
Q ss_pred HHHHHHHHcCC
Q psy15725 334 LFRRVAAALPG 344 (355)
Q Consensus 334 l~~~l~~~i~~ 344 (355)
+|++|++.+.+
T Consensus 154 l~~~l~~~~~~ 164 (165)
T cd01865 154 VFERLVDIICD 164 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999987654
No 26
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.96 E-value=1.7e-27 Score=197.20 Aligned_cols=101 Identities=43% Similarity=0.856 Sum_probs=83.1
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
..+||+++|++|||||||++++.+..+ ...+.+|.+.++....+..++..+.+.+||
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f-----------------------~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D 58 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSF-----------------------NPSFISTIGIDFKIRTIELDGKKIKLQIWD 58 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcC-----------------------CcccccCccceEEEEEEEECCEEEEEEEEe
Confidence 358999999999999999999999554 444456667677666777778788999999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
|||++.+...+..+++++|++++|||++++++|+.+..|+..+.
T Consensus 59 ~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~ 102 (167)
T cd01867 59 TAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIE 102 (167)
T ss_pred CCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHH
Confidence 99999988888888888899999988888888888777766653
No 27
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.96 E-value=2.1e-27 Score=195.62 Aligned_cols=98 Identities=32% Similarity=0.551 Sum_probs=81.3
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|++|||||||++++..+.+...+ .||++ +.....+.+++....+.+||||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~-----------------------~~t~~-~~~~~~~~~~~~~~~l~i~Dt~ 57 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKY-----------------------DPTIE-DSYRKQIEVDGQQCMLEILDTA 57 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccc-----------------------CCchh-hhEEEEEEECCEEEEEEEEECC
Confidence 79999999999999999999986654443 34444 3344556677778899999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
|+++|..++..+++++|++++|||++++.+|+.+..|...+.
T Consensus 58 G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~ 99 (163)
T cd04136 58 GTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQIL 99 (163)
T ss_pred CccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988888877664
No 28
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.95 E-value=1.6e-27 Score=199.73 Aligned_cols=166 Identities=37% Similarity=0.632 Sum_probs=131.1
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec----------
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE---------- 81 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~---------- 81 (355)
+.+||+++|++|||||||++++..+.+.+. +.+|++.++....+.+.
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~-----------------------~~~t~~~~~~~~~~~~~~~~~~~~~~~ 59 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPK-----------------------FITTVGIDFREKRVVYNSSGPGGTLGR 59 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCcc-----------------------CCCccceEEEEEEEEEcCccccccccC
Confidence 468999999999999999999999655444 44555555554444433
Q ss_pred CcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccc
Q psy15725 82 DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHH 161 (355)
Q Consensus 82 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (355)
+..+.+.+|||||+++|..++..+++++|++++|||++++++|..+..|+..+.....
T Consensus 60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---------------------- 117 (180)
T cd04127 60 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY---------------------- 117 (180)
T ss_pred CCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC----------------------
Confidence 4568899999999999999999999999999999999999999998888777642100
Q ss_pred cCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcc
Q psy15725 162 ANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQE 241 (355)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~ 241 (355)
T Consensus 118 -------------------------------------------------------------------------------- 117 (180)
T cd04127 118 -------------------------------------------------------------------------------- 117 (180)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEE
Q psy15725 242 RFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFI 321 (355)
Q Consensus 242 ~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 321 (355)
..+.|+++|+||+|+.+.+.+...+...+++..+++++
T Consensus 118 ------------------------------------------~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 155 (180)
T cd04127 118 ------------------------------------------CENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYF 155 (180)
T ss_pred ------------------------------------------CCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEE
Confidence 02456777777777765556666677778888889999
Q ss_pred EecCCCCCCHHHHHHHHHHHcCC
Q psy15725 322 ETSAKAGYNVKQLFRRVAAALPG 344 (355)
Q Consensus 322 ~~SA~~~~gv~~l~~~l~~~i~~ 344 (355)
++||++|.|++++|++|.+.+.+
T Consensus 156 e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 156 ETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999987753
No 29
>KOG0088|consensus
Probab=99.95 E-value=2.5e-28 Score=187.78 Aligned_cols=183 Identities=38% Similarity=0.647 Sum_probs=156.8
Q ss_pred CCCCCCCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee
Q psy15725 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL 80 (355)
Q Consensus 1 ~~~~~~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 80 (355)
|........+.-.+||+++|...||||+|+-|+..++|.. .--.|+...|..+.+.+
T Consensus 1 ~~~~~~~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~-----------------------kHlsTlQASF~~kk~n~ 57 (218)
T KOG0088|consen 1 MMLETNVDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNC-----------------------KHLSTLQASFQNKKVNV 57 (218)
T ss_pred CCccccccCCceeeEEEEEcCCccchhHHHHHHHHhhcch-----------------------hhHHHHHHHHhhccccc
Confidence 4555566678889999999999999999999999855433 33456666788888888
Q ss_pred cCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccccccc
Q psy15725 81 EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFH 160 (355)
Q Consensus 81 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
.+....++||||.|+++|..+-+-||++++++++|||++|++||+.++.|..+++...
T Consensus 58 ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~ml---------------------- 115 (218)
T KOG0088|consen 58 EDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTML---------------------- 115 (218)
T ss_pred ccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHh----------------------
Confidence 8888999999999999999999999999999999999999999999999988876421
Q ss_pred ccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCc
Q psy15725 161 HANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQ 240 (355)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~ 240 (355)
T Consensus 116 -------------------------------------------------------------------------------- 115 (218)
T KOG0088|consen 116 -------------------------------------------------------------------------------- 115 (218)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEE
Q psy15725 241 ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF 320 (355)
Q Consensus 241 ~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~ 320 (355)
...+.+++|+||+||..+++++.+++..+++..|.-|
T Consensus 116 -------------------------------------------Gnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y 152 (218)
T KOG0088|consen 116 -------------------------------------------GNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALY 152 (218)
T ss_pred -------------------------------------------CCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhh
Confidence 0245678899999998889999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHcCCCCCCCCC
Q psy15725 321 IETSAKAGYNVKQLFRRVAAALPGMDSTENK 351 (355)
Q Consensus 321 ~~~SA~~~~gv~~l~~~l~~~i~~~~~~~~~ 351 (355)
+++||+.+.||.++|+.|.+.+.....+..+
T Consensus 153 ~eTSAk~N~Gi~elFe~Lt~~MiE~~s~~qr 183 (218)
T KOG0088|consen 153 METSAKDNVGISELFESLTAKMIEHSSQRQR 183 (218)
T ss_pred eecccccccCHHHHHHHHHHHHHHHhhhccc
Confidence 9999999999999999999999877655443
No 30
>KOG0079|consensus
Probab=99.95 E-value=6e-29 Score=189.08 Aligned_cols=155 Identities=41% Similarity=0.737 Sum_probs=142.2
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+-++.+|+|++|||||+|+-+|.. ++|...|.-|+|.++..+.+.+++..+.++|||
T Consensus 7 hLfkllIigDsgVGKssLl~rF~d-----------------------dtFs~sYitTiGvDfkirTv~i~G~~VkLqIwD 63 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFAD-----------------------DTFSGSYITTIGVDFKIRTVDINGDRVKLQIWD 63 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhh-----------------------cccccceEEEeeeeEEEEEeecCCcEEEEEEee
Confidence 346889999999999999999998 555666777889999999999999999999999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW 171 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (355)
++|+++|+.+...++++..++++|||+++.+||.+...|+++++..
T Consensus 64 tAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~n---------------------------------- 109 (198)
T KOG0079|consen 64 TAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNN---------------------------------- 109 (198)
T ss_pred cccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhc----------------------------------
Confidence 9999999999999999999999999999999999999999999854
Q ss_pred cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725 172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVR 231 (355)
Q Consensus 172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~ 231 (355)
.+.+|-++||||.|.+..+.+..++...++...++.++++|++...|++.++
T Consensus 110 --------cdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF 161 (198)
T KOG0079|consen 110 --------CDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMF 161 (198)
T ss_pred --------CccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHH
Confidence 2479999999999999989999999999999999999999999988887654
No 31
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.95 E-value=4e-27 Score=196.20 Aligned_cols=172 Identities=27% Similarity=0.498 Sum_probs=133.4
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~ 92 (355)
.+||+++|++|||||||+++|..+.|...| .||++..+. ..+.+++..+.+.+|||
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~-----------------------~pt~~~~~~-~~~~~~~~~~~l~i~Dt 56 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEY-----------------------VPTVFDNYA-VTVMIGGEPYTLGLFDT 56 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCC-----------------------CCceeeeeE-EEEEECCEEEEEEEEEC
Confidence 479999999999999999999996655544 444454443 34556777889999999
Q ss_pred CCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725 93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW 171 (355)
Q Consensus 93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (355)
+|+++|..++..+++.+|++++|||++++++|+.+. .|+.++...
T Consensus 57 ~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~---------------------------------- 102 (175)
T cd01874 57 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH---------------------------------- 102 (175)
T ss_pred CCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh----------------------------------
Confidence 999999999999999999999999999999999986 598887542
Q ss_pred cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725 172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI 251 (355)
Q Consensus 172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~ 251 (355)
..++|+++|+||+|+.+...
T Consensus 103 --------~~~~piilvgnK~Dl~~~~~---------------------------------------------------- 122 (175)
T cd01874 103 --------CPKTPFLLVGTQIDLRDDPS---------------------------------------------------- 122 (175)
T ss_pred --------CCCCCEEEEEECHhhhhChh----------------------------------------------------
Confidence 13689999999999732100
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC-cEEEEecCCCCCC
Q psy15725 252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGYN 330 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~SA~~~~g 330 (355)
..+.+ .....+.+..+++..+++..+ +.+++|||++|.|
T Consensus 123 -----------------------~~~~l-----------------~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~ 162 (175)
T cd01874 123 -----------------------TIEKL-----------------AKNKQKPITPETGEKLARDLKAVKYVECSALTQKG 162 (175)
T ss_pred -----------------------hHHHh-----------------hhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCC
Confidence 00001 111124566777788887776 6999999999999
Q ss_pred HHHHHHHHHHHc
Q psy15725 331 VKQLFRRVAAAL 342 (355)
Q Consensus 331 v~~l~~~l~~~i 342 (355)
|+++|+.+++..
T Consensus 163 v~~~f~~~~~~~ 174 (175)
T cd01874 163 LKNVFDEAILAA 174 (175)
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 32
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.95 E-value=5e-27 Score=199.81 Aligned_cols=168 Identities=38% Similarity=0.696 Sum_probs=134.5
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
..+||+++|++|||||||+++|.+..+. ..+.+|++.++....+..++..+.+.+||
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~-----------------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~D 61 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFS-----------------------GSYITTIGVDFKIRTVEINGERVKLQIWD 61 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC-----------------------CCcCccccceeEEEEEEECCEEEEEEEEe
Confidence 4699999999999999999999985543 33456667777777777778788999999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW 171 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (355)
+||++.+..++..+++.+|++++|||++++++|+.+..|++.+...
T Consensus 62 ~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~---------------------------------- 107 (199)
T cd04110 62 TAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQN---------------------------------- 107 (199)
T ss_pred CCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh----------------------------------
Confidence 9999999999999999999999999999999998888887765321
Q ss_pred cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725 172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI 251 (355)
Q Consensus 172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~ 251 (355)
T Consensus 108 -------------------------------------------------------------------------------- 107 (199)
T cd04110 108 -------------------------------------------------------------------------------- 107 (199)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725 252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 331 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv 331 (355)
. ...|+++|+||+|+.....+...+...+++..+++++++||++|.||
T Consensus 108 -------------------------------~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi 155 (199)
T cd04110 108 -------------------------------C-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINV 155 (199)
T ss_pred -------------------------------C-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCH
Confidence 0 12466677777776555555556666677777889999999999999
Q ss_pred HHHHHHHHHHcCCCCCC
Q psy15725 332 KQLFRRVAAALPGMDST 348 (355)
Q Consensus 332 ~~l~~~l~~~i~~~~~~ 348 (355)
+++|++|.+.+....+.
T Consensus 156 ~~lf~~l~~~~~~~~~~ 172 (199)
T cd04110 156 EEMFNCITELVLRAKKD 172 (199)
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 99999999998865433
No 33
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.95 E-value=4.4e-27 Score=202.58 Aligned_cols=167 Identities=39% Similarity=0.620 Sum_probs=139.2
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecC-cEEEEEEEec
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDT 92 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~D~ 92 (355)
+||+++|++|||||||+++|.++. +...+.||++.++....+.+++ ..+.+.+|||
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~-----------------------~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt 57 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEG-----------------------FGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDI 57 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCC-----------------------CCCCCCCceeEEEEEEEEEeCCCCEEEEEEEEC
Confidence 589999999999999999999844 4445566778888777777764 5789999999
Q ss_pred CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725 93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI 172 (355)
Q Consensus 93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (355)
+|++.+..++..+++.+|++++|||++++++|+++..|+..+.....
T Consensus 58 ~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~--------------------------------- 104 (215)
T cd04109 58 GGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLK--------------------------------- 104 (215)
T ss_pred CCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc---------------------------------
Confidence 99999999999999999999999999999999999889887753200
Q ss_pred ccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccccc
Q psy15725 173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIR 252 (355)
Q Consensus 173 ~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~ 252 (355)
T Consensus 105 -------------------------------------------------------------------------------- 104 (215)
T cd04109 105 -------------------------------------------------------------------------------- 104 (215)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHH
Q psy15725 253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 332 (355)
Q Consensus 253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~ 332 (355)
....+.|+++|+||+|+...+.+..++...+++..+++++++||++|.||+
T Consensus 105 -----------------------------~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~ 155 (215)
T cd04109 105 -----------------------------SSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVN 155 (215)
T ss_pred -----------------------------ccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence 000356788888888887667777778888888888999999999999999
Q ss_pred HHHHHHHHHcCCC
Q psy15725 333 QLFRRVAAALPGM 345 (355)
Q Consensus 333 ~l~~~l~~~i~~~ 345 (355)
++|++|++.+.+.
T Consensus 156 ~lf~~l~~~l~~~ 168 (215)
T cd04109 156 LLFQQLAAELLGV 168 (215)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998764
No 34
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.95 E-value=4.5e-27 Score=194.40 Aligned_cols=100 Identities=42% Similarity=0.895 Sum_probs=84.1
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~ 92 (355)
.+||+++|++|||||||++++.++.+. ..+.+|.+.++....+..++..+.+.+||+
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~-----------------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~ 58 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYT-----------------------ESYISTIGVDFKIRTIELDGKTIKLQIWDT 58 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC-----------------------CCCCCccceeEEEEEEEECCEEEEEEEEEC
Confidence 489999999999999999999985443 344556677777777777788889999999
Q ss_pred CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
||++.+..++..+++.+|++++|||++++++|..+..|+..+.
T Consensus 59 ~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~ 101 (166)
T cd01869 59 AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEID 101 (166)
T ss_pred CCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHH
Confidence 9999998888888999999999999999888888888877664
No 35
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=4.4e-27 Score=198.50 Aligned_cols=171 Identities=38% Similarity=0.650 Sum_probs=136.1
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|++|||||||+++|.++.+. ..+.+|.+.++....+.+++..+.+.+||++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~-----------------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~ 57 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFS-----------------------ESTKSTIGVDFKIKTVYIENKIIKLQIWDTN 57 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-----------------------CCCCCceeeEEEEEEEEECCEEEEEEEEECC
Confidence 58999999999999999999985543 3345566667766777777888899999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID 173 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (355)
|++.+..++..+++.+|++++|||++++++|..+..|+.++....
T Consensus 58 g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~----------------------------------- 102 (188)
T cd04125 58 GQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYA----------------------------------- 102 (188)
T ss_pred CcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-----------------------------------
Confidence 999998889899999999999999999999988888877764310
Q ss_pred cccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccC
Q psy15725 174 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRD 253 (355)
Q Consensus 174 ~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~ 253 (355)
T Consensus 103 -------------------------------------------------------------------------------- 102 (188)
T cd04125 103 -------------------------------------------------------------------------------- 102 (188)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725 254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333 (355)
Q Consensus 254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~ 333 (355)
..+.|+++++||.|+.+.+.+...++..+++..+++++++||++|.||++
T Consensus 103 ------------------------------~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~ 152 (188)
T cd04125 103 ------------------------------RENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEE 152 (188)
T ss_pred ------------------------------CCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 01356666666666655555666666777777788999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCC
Q psy15725 334 LFRRVAAALPGMDSTENKP 352 (355)
Q Consensus 334 l~~~l~~~i~~~~~~~~~~ 352 (355)
+|++|++.+.+...+....
T Consensus 153 ~f~~l~~~~~~~~~~~~~~ 171 (188)
T cd04125 153 AFILLVKLIIKRLEEQELS 171 (188)
T ss_pred HHHHHHHHHHHHhhcCcCC
Confidence 9999999998766555443
No 36
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.95 E-value=4.2e-27 Score=223.61 Aligned_cols=252 Identities=21% Similarity=0.219 Sum_probs=154.7
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 94 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 94 (355)
+|+++|++|||||||+|+|++...... . ..+++..+.......++ ...+.+|||||
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v---------------------~-~~~g~t~d~~~~~~~~~--~~~~~liDTpG 56 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIV---------------------S-DTPGVTRDRKYGDAEWG--GREFILIDTGG 56 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCccee---------------------c-CCCCcccCceEEEEEEC--CeEEEEEECCC
Confidence 589999999999999999998542110 0 01111122222333333 34699999999
Q ss_pred cc--------cccccccccccCccEEEEEEECCCcchhhh--HHHHHHHHhhhcCCceEEeeccccccccccccccccCc
Q psy15725 95 QE--------RFRSLIPSYIRDSTVAVVVYDITNANSFHQ--TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164 (355)
Q Consensus 95 ~~--------~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (355)
.. .+......+++.+|++++|+|+.+..+... +..|+.+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~------------------------------- 105 (429)
T TIGR03594 57 IEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRK------------------------------- 105 (429)
T ss_pred CCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-------------------------------
Confidence 63 344455667889999999999988544432 3334332
Q ss_pred cccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCe-EEEEeeeeecccc----------------
Q psy15725 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNV---------------- 227 (355)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~-~~~~~sa~~~~~v---------------- 227 (355)
.+.|+++|+||+|......... ++ ...+. .++.+|+..+.++
T Consensus 106 ----------------~~~piilVvNK~D~~~~~~~~~----~~-~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~ 164 (429)
T TIGR03594 106 ----------------SGKPVILVANKIDGKKEDAVAA----EF-YSLGFGEPIPISAEHGRGIGDLLDAILELLPEEEE 164 (429)
T ss_pred ----------------hCCCEEEEEECccCCcccccHH----HH-HhcCCCCeEEEeCCcCCChHHHHHHHHHhcCcccc
Confidence 2689999999999754221000 00 01111 1222222222111
Q ss_pred -----------------------------------------------------ceEEEEEEeCCCcccccccc-------
Q psy15725 228 -----------------------------------------------------KQVRLQLWDTAGQERFRSLI------- 247 (355)
Q Consensus 228 -----------------------------------------------------~~i~~~i~D~~g~~~~~~~~------- 247 (355)
+...+.++||+|........
T Consensus 165 ~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~ 244 (429)
T TIGR03594 165 EEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYS 244 (429)
T ss_pred cccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHH
Confidence 11246789999965443322
Q ss_pred ----cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhh----cCcE
Q psy15725 248 ----PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE----LNVM 319 (355)
Q Consensus 248 ----~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~----~~~~ 319 (355)
..++..+|++++|+|++++.+.++. .+...+.. .++|+++|+||+|+.+...........+... .+++
T Consensus 245 ~~~~~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (429)
T TIGR03594 245 VLRTLKAIERADVVLLVLDATEGITEQDL-RIAGLILE---AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAP 320 (429)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCc
Confidence 2357889999999999988776654 23333333 5799999999999862111111111111111 2479
Q ss_pred EEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725 320 FIETSAKAGYNVKQLFRRVAAALPGMD 346 (355)
Q Consensus 320 ~~~~SA~~~~gv~~l~~~l~~~i~~~~ 346 (355)
++++||++|.|++++|+++.+......
T Consensus 321 vi~~SA~~g~~v~~l~~~i~~~~~~~~ 347 (429)
T TIGR03594 321 IVFISALTGQGVDKLLDAIDEVYENAN 347 (429)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999998776443
No 37
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.95 E-value=6.3e-27 Score=200.76 Aligned_cols=177 Identities=23% Similarity=0.472 Sum_probs=137.3
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~ 92 (355)
++||+|||++|||||||+++|..+.|+..| .||++.++. ..+.+++..+.+.+|||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y-----------------------~pTi~~~~~-~~~~~~~~~v~L~iwDt 56 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSY-----------------------VPTVFENYT-ASFEIDKRRIELNMWDT 56 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCcc-----------------------CCccccceE-EEEEECCEEEEEEEEeC
Confidence 489999999999999999999996655554 445454443 45667888899999999
Q ss_pred CCcccccccccccccCccEEEEEEECCCcchhhhH-HHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725 93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW 171 (355)
Q Consensus 93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (355)
+|++.|..+++.+++.+|++++|||++++++|+.+ ..|..++...
T Consensus 57 ~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~---------------------------------- 102 (222)
T cd04173 57 SGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEF---------------------------------- 102 (222)
T ss_pred CCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh----------------------------------
Confidence 99999999999999999999999999999999998 5688766432
Q ss_pred cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725 172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI 251 (355)
Q Consensus 172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~ 251 (355)
..++|++|||||+|+.++..
T Consensus 103 --------~~~~piiLVgnK~DL~~~~~---------------------------------------------------- 122 (222)
T cd04173 103 --------CPNAKVVLVGCKLDMRTDLA---------------------------------------------------- 122 (222)
T ss_pred --------CCCCCEEEEEECcccccchh----------------------------------------------------
Confidence 24799999999999743100
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCCCC
Q psy15725 252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYN 330 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~~g 330 (355)
....+... ....+..+++..+++..++ +|++|||+++.|
T Consensus 123 -----------------------~~~~~~~~-----------------~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~ 162 (222)
T cd04173 123 -----------------------TLRELSKQ-----------------RLIPVTHEQGTVLAKQVGAVSYVECSSRSSER 162 (222)
T ss_pred -----------------------hhhhhhhc-----------------cCCccCHHHHHHHHHHcCCCEEEEcCCCcCCc
Confidence 00000000 0123667788889999885 999999999985
Q ss_pred -HHHHHHHHHHHcCCCCC
Q psy15725 331 -VKQLFRRVAAALPGMDS 347 (355)
Q Consensus 331 -v~~l~~~l~~~i~~~~~ 347 (355)
|+++|+...+....++.
T Consensus 163 ~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 163 SVRDVFHVATVASLGRGH 180 (222)
T ss_pred CHHHHHHHHHHHHHhccC
Confidence 99999999997776543
No 38
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=6.8e-27 Score=197.77 Aligned_cols=172 Identities=45% Similarity=0.749 Sum_probs=133.3
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|++|||||||++++..+.+.. +.+.+|++.++....+.+++..+.+.+||||
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~----------------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~ 58 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLN----------------------GNFIATVGIDFRNKVVTVDGVKVKLQIWDTA 58 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCc----------------------cCcCCcccceeEEEEEEECCEEEEEEEEeCC
Confidence 589999999999999999999855421 2345566667776677788888999999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID 173 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (355)
|++++...+..+++.+|++++|||++++++|+++..|+..+...
T Consensus 59 G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~------------------------------------ 102 (191)
T cd04112 59 GQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEY------------------------------------ 102 (191)
T ss_pred CcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh------------------------------------
Confidence 99988888888888888888888888888888777776655321
Q ss_pred cccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccC
Q psy15725 174 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRD 253 (355)
Q Consensus 174 ~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~ 253 (355)
T Consensus 103 -------------------------------------------------------------------------------- 102 (191)
T cd04112 103 -------------------------------------------------------------------------------- 102 (191)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725 254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333 (355)
Q Consensus 254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~ 333 (355)
...++|+++|+||.|+..++.+...+...+++..+++++++||++|.|+++
T Consensus 103 -----------------------------~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~ 153 (191)
T cd04112 103 -----------------------------AQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVEL 153 (191)
T ss_pred -----------------------------CCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 113456667777777655555555666667777788999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCC
Q psy15725 334 LFRRVAAALPGMDSTENKP 352 (355)
Q Consensus 334 l~~~l~~~i~~~~~~~~~~ 352 (355)
+|++|.+.+...+.+....
T Consensus 154 l~~~l~~~~~~~~~~~~~~ 172 (191)
T cd04112 154 AFTAVAKELKHRKYEQPDE 172 (191)
T ss_pred HHHHHHHHHHHhccccCCC
Confidence 9999999998886554433
No 39
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.95 E-value=8e-27 Score=192.98 Aligned_cols=167 Identities=28% Similarity=0.569 Sum_probs=138.6
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|++|||||||++++.++.+.. .+.+|++.++....+..++..+.+++|||+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~-----------------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~ 57 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVS-----------------------KYLPTIGIDYGVKKVSVRNKEVRVNFFDLS 57 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-----------------------CCCCccceeEEEEEEEECCeEEEEEEEECC
Confidence 589999999999999999999955433 455666777777777788888999999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID 173 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (355)
|++.+..++..+++.+|++|+|||++++.+|+.+..|+.++......
T Consensus 58 G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~--------------------------------- 104 (168)
T cd04119 58 GHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGP--------------------------------- 104 (168)
T ss_pred ccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccc---------------------------------
Confidence 99999999999999999999999999999999999998887542100
Q ss_pred cccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccC
Q psy15725 174 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRD 253 (355)
Q Consensus 174 ~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~ 253 (355)
.
T Consensus 105 ----------------------~--------------------------------------------------------- 105 (168)
T cd04119 105 ----------------------H--------------------------------------------------------- 105 (168)
T ss_pred ----------------------c---------------------------------------------------------
Confidence 0
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725 254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333 (355)
Q Consensus 254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~ 333 (355)
. ...+.|+++|+||+|+.+++.+...+...+++..+++++++||++|.||++
T Consensus 106 -~---------------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 157 (168)
T cd04119 106 -G---------------------------NMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNE 157 (168)
T ss_pred -c---------------------------cCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 0 014688999999999865566667777777777789999999999999999
Q ss_pred HHHHHHHHcC
Q psy15725 334 LFRRVAAALP 343 (355)
Q Consensus 334 l~~~l~~~i~ 343 (355)
+|++|.+.+.
T Consensus 158 l~~~l~~~l~ 167 (168)
T cd04119 158 MFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 40
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.95 E-value=5.9e-27 Score=196.24 Aligned_cols=100 Identities=27% Similarity=0.682 Sum_probs=89.0
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|+.|||||||++||..+.+ ...+.||++.++..+.+.+++..+.+.+|||+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f-----------------------~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~ 57 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEF-----------------------DEDYIQTLGVNFMEKTISIRGTEITFSIWDLG 57 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-----------------------CCCCCCccceEEEEEEEEECCEEEEEEEEeCC
Confidence 5899999999999999999999544 44456677888887888888888999999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT 136 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~ 136 (355)
|++.|..++..+++++|++++|||++++++|+++..|+.++..
T Consensus 58 G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~ 100 (182)
T cd04128 58 GQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARG 100 (182)
T ss_pred CchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988764
No 41
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.95 E-value=1e-26 Score=196.29 Aligned_cols=181 Identities=29% Similarity=0.515 Sum_probs=135.9
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
.||+++|++|||||||+++|..+.+...+. ||++..+. ..+..++..+.+.+|||+
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~-----------------------~t~~~~~~-~~i~~~~~~~~l~i~Dt~ 56 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYE-----------------------PTVFENYV-HDIFVDGLHIELSLWDTA 56 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccC-----------------------CcceeeeE-EEEEECCEEEEEEEEECC
Confidence 389999999999999999999966655444 44444433 344566777899999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI 172 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (355)
|++.|..++..+++.+|++++|||++++++|+.+. .|+..+...
T Consensus 57 G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~----------------------------------- 101 (189)
T cd04134 57 GQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREH----------------------------------- 101 (189)
T ss_pred CChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-----------------------------------
Confidence 99999999999999999999999999999999886 598887642
Q ss_pred ccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccccc
Q psy15725 173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIR 252 (355)
Q Consensus 173 ~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~ 252 (355)
..++|+++|+||+|+...+...
T Consensus 102 -------~~~~piilvgNK~Dl~~~~~~~--------------------------------------------------- 123 (189)
T cd04134 102 -------CPGVKLVLVALKCDLREARNER--------------------------------------------------- 123 (189)
T ss_pred -------CCCCCEEEEEEChhhccChhhH---------------------------------------------------
Confidence 1378999999999984321000
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC-cEEEEecCCCCCCH
Q psy15725 253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGYNV 331 (355)
Q Consensus 253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~SA~~~~gv 331 (355)
. .+.. .....+..+++..+++..+ +++++|||++|.||
T Consensus 124 ------------------~------~~~~-----------------~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v 162 (189)
T cd04134 124 ------------------D------DLQR-----------------YGKHTISYEEGLAVAKRINALRYLECSAKLNRGV 162 (189)
T ss_pred ------------------H------HHhh-----------------ccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCH
Confidence 0 0000 0012234455566666666 69999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCC
Q psy15725 332 KQLFRRVAAALPGMDSTENKP 352 (355)
Q Consensus 332 ~~l~~~l~~~i~~~~~~~~~~ 352 (355)
+++|++|++.+...+..+..+
T Consensus 163 ~e~f~~l~~~~~~~~~~~~~~ 183 (189)
T cd04134 163 NEAFTEAARVALNVRPPHPHS 183 (189)
T ss_pred HHHHHHHHHHHhcccccCcCC
Confidence 999999999998776655443
No 42
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.95 E-value=7e-27 Score=192.87 Aligned_cols=98 Identities=30% Similarity=0.544 Sum_probs=81.0
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|.+|||||||++++..+.+...+ .+|++..+ ...+.+++..+.+.+||||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~-----------------------~~t~~~~~-~~~~~~~~~~~~l~i~Dt~ 57 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKY-----------------------DPTIEDSY-RKQVEVDGQQCMLEILDTA 57 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCccc-----------------------CCcchheE-EEEEEECCEEEEEEEEECC
Confidence 79999999999999999999986554443 34444333 3456667778899999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
|++.|..++..+++.+|++++|||++++.+|+.+..|+..+.
T Consensus 58 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~ 99 (164)
T cd04175 58 GTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQIL 99 (164)
T ss_pred CcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988888877664
No 43
>PLN03110 Rab GTPase; Provisional
Probab=99.95 E-value=1e-26 Score=200.16 Aligned_cols=168 Identities=36% Similarity=0.689 Sum_probs=138.0
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
....+||+++|++|||||||+++|.+..+ ...+.+|++.++....+.+++..+.+.+
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~-----------------------~~~~~~t~g~~~~~~~v~~~~~~~~l~l 65 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEF-----------------------CLESKSTIGVEFATRTLQVEGKTVKAQI 65 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCC-----------------------CCCCCCceeEEEEEEEEEECCEEEEEEE
Confidence 44679999999999999999999998543 3345567788888888888888899999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS 169 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (355)
||++|+++|..++..+++.++++++|||++++.+|+.+..|+..+...
T Consensus 66 ~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~-------------------------------- 113 (216)
T PLN03110 66 WDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDH-------------------------------- 113 (216)
T ss_pred EECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHh--------------------------------
Confidence 999999999999999999999999999999998998888887765421
Q ss_pred cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725 170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS 249 (355)
Q Consensus 170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~ 249 (355)
T Consensus 114 -------------------------------------------------------------------------------- 113 (216)
T PLN03110 114 -------------------------------------------------------------------------------- 113 (216)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCC
Q psy15725 250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 329 (355)
Q Consensus 250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~ 329 (355)
...+.|+++|+||+|+...+.+..+++..+++..+++++++||++|.
T Consensus 114 ---------------------------------~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~ 160 (216)
T PLN03110 114 ---------------------------------ADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEAT 160 (216)
T ss_pred ---------------------------------CCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 00246777777777766556666667777777788999999999999
Q ss_pred CHHHHHHHHHHHcCCC
Q psy15725 330 NVKQLFRRVAAALPGM 345 (355)
Q Consensus 330 gv~~l~~~l~~~i~~~ 345 (355)
||+++|++|++.+...
T Consensus 161 ~v~~lf~~l~~~i~~~ 176 (216)
T PLN03110 161 NVEKAFQTILLEIYHI 176 (216)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999988653
No 44
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.95 E-value=1.1e-26 Score=191.39 Aligned_cols=99 Identities=32% Similarity=0.587 Sum_probs=82.2
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~ 92 (355)
++||+++|.+|||||||++++..+.+.+.+ .+|++ ++....+.+++....+.+|||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~-----------------------~~t~~-~~~~~~~~~~~~~~~l~i~Dt 56 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKY-----------------------DPTIE-DFYRKEIEVDSSPSVLEILDT 56 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCC-----------------------CCchh-heEEEEEEECCEEEEEEEEEC
Confidence 479999999999999999999996554443 34443 444556667777888999999
Q ss_pred CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
+|+++|..++..+++++|++++|||++++.+|+++..|+..+.
T Consensus 57 ~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~ 99 (163)
T cd04176 57 AGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIV 99 (163)
T ss_pred CCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888876664
No 45
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=9.9e-27 Score=199.47 Aligned_cols=166 Identities=40% Similarity=0.733 Sum_probs=132.7
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee-cCcEEEEEEEe
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWD 91 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D 91 (355)
++||+++|++|||||||+++|+++.+... +.+|++.++....+.+ ++..+.+++||
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~-----------------------~~~ti~~d~~~~~i~~~~~~~~~l~i~D 58 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEV-----------------------SDPTVGVDFFSRLIEIEPGVRIKLQLWD 58 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-----------------------CCceeceEEEEEEEEECCCCEEEEEEEe
Confidence 58999999999999999999998554443 3456677777666665 45678999999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW 171 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (355)
|+|++.+..++..+++.+|++++|||++++++|+++..|+.++.....
T Consensus 59 t~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~-------------------------------- 106 (211)
T cd04111 59 TAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQ-------------------------------- 106 (211)
T ss_pred CCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC--------------------------------
Confidence 999999999999999999999999999999999988888776642100
Q ss_pred cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725 172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI 251 (355)
Q Consensus 172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~ 251 (355)
.
T Consensus 107 --------~----------------------------------------------------------------------- 107 (211)
T cd04111 107 --------P----------------------------------------------------------------------- 107 (211)
T ss_pred --------C-----------------------------------------------------------------------
Confidence 0
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725 252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 331 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv 331 (355)
...|+++|+||.|+.+.+.+...+...+++..+++++++||++|.||
T Consensus 108 ---------------------------------~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v 154 (211)
T cd04111 108 ---------------------------------HRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNV 154 (211)
T ss_pred ---------------------------------CCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCH
Confidence 23556666666666555556666677777778899999999999999
Q ss_pred HHHHHHHHHHcCCC
Q psy15725 332 KQLFRRVAAALPGM 345 (355)
Q Consensus 332 ~~l~~~l~~~i~~~ 345 (355)
+++|++|++.+...
T Consensus 155 ~e~f~~l~~~~~~~ 168 (211)
T cd04111 155 EEAFELLTQEIYER 168 (211)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988755
No 46
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.95 E-value=1.2e-26 Score=190.95 Aligned_cols=159 Identities=39% Similarity=0.708 Sum_probs=129.3
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec--CcEEEEEEEe
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE--DRTVRLQLWD 91 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~i~D 91 (355)
+||+++|++|||||||++++.++.+. ..+.+|++.++....+.+. +..+.+++||
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~-----------------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D 57 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFT-----------------------KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWD 57 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-----------------------CCCCCcEEEEEEEEEEEEcCCCCEEEEEEee
Confidence 58999999999999999999985543 3345566667766666666 6778999999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW 171 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (355)
|||+++|..++..+++.+|++++|||++++++|+.+..|+..+...
T Consensus 58 ~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~---------------------------------- 103 (162)
T cd04106 58 TAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAE---------------------------------- 103 (162)
T ss_pred CCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh----------------------------------
Confidence 9999999999999999999999999999998998888887665310
Q ss_pred cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725 172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI 251 (355)
Q Consensus 172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~ 251 (355)
T Consensus 104 -------------------------------------------------------------------------------- 103 (162)
T cd04106 104 -------------------------------------------------------------------------------- 103 (162)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725 252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 331 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv 331 (355)
. .++|+++|+||.|+...+.+..+++..+++..+++++++||++|.|+
T Consensus 104 -------------------------------~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v 151 (162)
T cd04106 104 -------------------------------C-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNV 151 (162)
T ss_pred -------------------------------C-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 0 35677777777777655666667777788888899999999999999
Q ss_pred HHHHHHHHHH
Q psy15725 332 KQLFRRVAAA 341 (355)
Q Consensus 332 ~~l~~~l~~~ 341 (355)
+++|++|...
T Consensus 152 ~~l~~~l~~~ 161 (162)
T cd04106 152 TELFEYLAEK 161 (162)
T ss_pred HHHHHHHHHh
Confidence 9999999864
No 47
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.95 E-value=1.9e-26 Score=191.30 Aligned_cols=99 Identities=42% Similarity=0.807 Sum_probs=86.6
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 94 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 94 (355)
||+++|++|||||||++|+..+.+ ...+.||++.++....+.+++....+++|||||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-----------------------~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G 58 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-----------------------DKNYKATIGVDFEMERFEILGVPFSLQLWDTAG 58 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-----------------------CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCC
Confidence 899999999999999999999554 444556667777777777888888999999999
Q ss_pred cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725 95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT 136 (355)
Q Consensus 95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~ 136 (355)
+++|..++..+++.+|++++|||++++++|+.+..|+.++.+
T Consensus 59 ~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~ 100 (170)
T cd04108 59 QERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALK 100 (170)
T ss_pred hHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999889887653
No 48
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.95 E-value=1.1e-26 Score=196.29 Aligned_cols=169 Identities=36% Similarity=0.563 Sum_probs=133.9
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 94 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 94 (355)
||+++|.+|||||||+++|..+.+...+ .+|++..+ .....+++..+.+.+|||+|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~-----------------------~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G 56 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETY-----------------------DPTIEDSY-RKQVVVDGQPCMLEVLDTAG 56 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccC-----------------------CCchHhhE-EEEEEECCEEEEEEEEECCC
Confidence 5899999999999999999986554443 34444333 33455677778899999999
Q ss_pred cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccccc
Q psy15725 95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDD 174 (355)
Q Consensus 95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (355)
+++|..++..+++.+|++++|||++++++|+.+..|+..+.....
T Consensus 57 ~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~----------------------------------- 101 (190)
T cd04144 57 QEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKD----------------------------------- 101 (190)
T ss_pred chhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhc-----------------------------------
Confidence 999999999999999999999999999999999888877643200
Q ss_pred ccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccCC
Q psy15725 175 VRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDS 254 (355)
Q Consensus 175 ~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~ 254 (355)
T Consensus 102 -------------------------------------------------------------------------------- 101 (190)
T cd04144 102 -------------------------------------------------------------------------------- 101 (190)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHH
Q psy15725 255 TVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 334 (355)
Q Consensus 255 ~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l 334 (355)
....++|+++|+||+|+...+.+...++..+++..+++++++||++|.||+++
T Consensus 102 ---------------------------~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l 154 (190)
T cd04144 102 ---------------------------ESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERA 154 (190)
T ss_pred ---------------------------ccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHH
Confidence 00035788888888888666667767777777778899999999999999999
Q ss_pred HHHHHHHcCCCCCCC
Q psy15725 335 FRRVAAALPGMDSTE 349 (355)
Q Consensus 335 ~~~l~~~i~~~~~~~ 349 (355)
|+++++.+...+...
T Consensus 155 ~~~l~~~l~~~~~~~ 169 (190)
T cd04144 155 FYTLVRALRQQRQGG 169 (190)
T ss_pred HHHHHHHHHHhhccc
Confidence 999999877554443
No 49
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.95 E-value=2.2e-26 Score=190.16 Aligned_cols=99 Identities=30% Similarity=0.673 Sum_probs=82.6
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|++|||||||+++++.+.+. ..+.+|++.++....+..+++.+.+.+|||+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~-----------------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~ 57 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFE-----------------------KKYVATLGVEVHPLDFHTNRGKIRFNVWDTA 57 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-----------------------CCCCCceeeEEEEEEEEECCEEEEEEEEECC
Confidence 58999999999999999999985443 3345666777777777777788999999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
|++.+..++..+++.+|++++|||++++++|+.+..|+..+.
T Consensus 58 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~ 99 (166)
T cd00877 58 GQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLV 99 (166)
T ss_pred CChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 999998888888889999999999988888888877877764
No 50
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.95 E-value=2.3e-26 Score=189.94 Aligned_cols=100 Identities=37% Similarity=0.860 Sum_probs=83.7
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~ 92 (355)
.+||+++|++|||||||++++.++.+ ...+.|+.+.++....+..++....+.+||+
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~-----------------------~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~ 59 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEF-----------------------NLDSKSTIGVEFATRSIQIDGKTIKAQIWDT 59 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC-----------------------CCCCCCccceEEEEEEEEECCEEEEEEEEeC
Confidence 58999999999999999999998544 3334566677777777778888889999999
Q ss_pred CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
||++++..++..+++.++++++|||++++.+|+.+..|+..+.
T Consensus 60 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~ 102 (165)
T cd01868 60 AGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELR 102 (165)
T ss_pred CChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 9999988888888889999999999998888888877776654
No 51
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.95 E-value=2.6e-26 Score=188.98 Aligned_cols=161 Identities=43% Similarity=0.763 Sum_probs=138.0
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 94 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 94 (355)
||+++|++|||||||+++|.++.+ ...+.+|++.+.....+..++..+.+.+||++|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-----------------------~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g 57 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-----------------------PENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSG 57 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-----------------------TSSSETTSSEEEEEEEEEETTEEEEEEEEEETT
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-----------------------ccccccccccccccccccccccccccccccccc
Confidence 799999999999999999999544 444566778888889999999999999999999
Q ss_pred cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccccc
Q psy15725 95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDD 174 (355)
Q Consensus 95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (355)
++.|..++..+++++|++|+|||+++++||+.+..|++.+...
T Consensus 58 ~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~------------------------------------- 100 (162)
T PF00071_consen 58 QERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKY------------------------------------- 100 (162)
T ss_dssp SGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHH-------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc-------------------------------------
Confidence 9999888888899999999999999998888888887776532
Q ss_pred ccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccCC
Q psy15725 175 VRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDS 254 (355)
Q Consensus 175 ~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~ 254 (355)
T Consensus 101 -------------------------------------------------------------------------------- 100 (162)
T PF00071_consen 101 -------------------------------------------------------------------------------- 100 (162)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHH
Q psy15725 255 TVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 334 (355)
Q Consensus 255 ~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l 334 (355)
...+.|+++++||.|+.+.+.+..+++..+++.++.+++++||+++.||.++
T Consensus 101 ----------------------------~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 152 (162)
T PF00071_consen 101 ----------------------------KPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEI 152 (162)
T ss_dssp ----------------------------STTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHH
T ss_pred ----------------------------ccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHH
Confidence 1125677777777777666788888899999999999999999999999999
Q ss_pred HHHHHHHcC
Q psy15725 335 FRRVAAALP 343 (355)
Q Consensus 335 ~~~l~~~i~ 343 (355)
|..+++.+.
T Consensus 153 f~~~i~~i~ 161 (162)
T PF00071_consen 153 FQELIRKIL 161 (162)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998874
No 52
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.95 E-value=2.2e-26 Score=191.54 Aligned_cols=170 Identities=29% Similarity=0.531 Sum_probs=132.8
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|++|||||||+.++..+.+...|.| |++ +.....+.++++.+.+.+|||+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~-----------------------t~~-~~~~~~~~~~~~~~~l~i~Dt~ 57 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIP-----------------------TVF-DNYSANVMVDGKPVNLGLWDTA 57 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCC-----------------------cce-eeeEEEEEECCEEEEEEEEECC
Confidence 7999999999999999999999666555444 433 3334445677888999999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI 172 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (355)
|++.|..++..+++.+|++|+|||++++++|+.+. .|+..+...
T Consensus 58 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~----------------------------------- 102 (174)
T cd01871 58 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH----------------------------------- 102 (174)
T ss_pred CchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-----------------------------------
Confidence 99999999999999999999999999999999985 688877532
Q ss_pred ccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccccc
Q psy15725 173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIR 252 (355)
Q Consensus 173 ~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~ 252 (355)
..++|+++|+||+|+.+.+.
T Consensus 103 -------~~~~piilvgnK~Dl~~~~~----------------------------------------------------- 122 (174)
T cd01871 103 -------CPNTPIILVGTKLDLRDDKD----------------------------------------------------- 122 (174)
T ss_pred -------CCCCCEEEEeeChhhccChh-----------------------------------------------------
Confidence 13789999999999742110
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCCCCH
Q psy15725 253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNV 331 (355)
Q Consensus 253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~~gv 331 (355)
+. +.+.. ...+.+..+++..+++..+. ++++|||++|.||
T Consensus 123 ---------------~~-------~~~~~-----------------~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i 163 (174)
T cd01871 123 ---------------TI-------EKLKE-----------------KKLTPITYPQGLAMAKEIGAVKYLECSALTQKGL 163 (174)
T ss_pred ---------------hH-------HHHhh-----------------ccCCCCCHHHHHHHHHHcCCcEEEEecccccCCH
Confidence 00 00000 01245667888888888884 9999999999999
Q ss_pred HHHHHHHHHH
Q psy15725 332 KQLFRRVAAA 341 (355)
Q Consensus 332 ~~l~~~l~~~ 341 (355)
+++|+.+++.
T Consensus 164 ~~~f~~l~~~ 173 (174)
T cd01871 164 KTVFDEAIRA 173 (174)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 53
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.95 E-value=2.5e-26 Score=189.45 Aligned_cols=100 Identities=29% Similarity=0.510 Sum_probs=80.7
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+.+||+++|++|||||||++++.+..+.. .+.++.+.. ......+++..+.+.+||
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~-----------------------~~~~t~~~~-~~~~~~~~~~~~~~~i~D 56 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVT-----------------------DYDPTIEDS-YTKQCEIDGQWAILDILD 56 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCc-----------------------ccCCCccce-EEEEEEECCEEEEEEEEE
Confidence 46899999999999999999999854433 334444433 334455777788999999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
|||++++..++..+++.+|++++|||++++.+|+.+..|+..+.
T Consensus 57 t~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~ 100 (164)
T cd04145 57 TAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQIL 100 (164)
T ss_pred CCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888888888876654
No 54
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.95 E-value=3.1e-26 Score=189.78 Aligned_cols=101 Identities=38% Similarity=0.777 Sum_probs=83.4
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
..+||+++|++|||||||++++.+..+... +.++.+.++....+..++....+.+||
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~-----------------------~~~t~~~~~~~~~~~~~~~~~~~~i~D 59 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------HDLTIGVEFGARMITIDGKQIKLQIWD 59 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCC-----------------------CCCccceeEEEEEEEECCEEEEEEEEE
Confidence 358999999999999999999998554333 345556777777777888888999999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
+||++++..++..+++.+|++++|||++++.+|+.+..|+.+++
T Consensus 60 t~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~ 103 (168)
T cd01866 60 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDAR 103 (168)
T ss_pred CCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 99999888888888888899999999888888888888877664
No 55
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=3.6e-26 Score=193.10 Aligned_cols=182 Identities=26% Similarity=0.354 Sum_probs=128.9
Q ss_pred eeEEEEEcCCCCChhHHHH-HhhhcCCCCCceeeeecccceeeecccCCCCCccccccce-eeeee--------eeeecC
Q psy15725 13 KFKLVFLGEQSVGKTSLIT-RFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI-DFLSK--------TMYLED 82 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~-~~~~~--------~~~~~~ 82 (355)
.+||+++|++|||||||+. ++.++.+.. ..+...+.||++. +.... ...+++
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~------------------~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~ 63 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQ------------------YQLLATHVPTVWAIDQYRVCQEVLERSRDVVDG 63 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCccc------------------ccCccccCCceecccceeEEeeeccccceeeCC
Confidence 4899999999999999996 555432211 2234445566642 22211 125678
Q ss_pred cEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccc
Q psy15725 83 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHH 161 (355)
Q Consensus 83 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (355)
..+.+++|||+|++. ..+..+++++|++++|||++++.||+++. .|+.+++..
T Consensus 64 ~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~------------------------ 117 (195)
T cd01873 64 VSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF------------------------ 117 (195)
T ss_pred EEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh------------------------
Confidence 889999999999875 35667899999999999999999999996 599888643
Q ss_pred cCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcc
Q psy15725 162 ANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQE 241 (355)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~ 241 (355)
..++|+++||||+|+.+...... ..
T Consensus 118 ------------------~~~~piilvgNK~DL~~~~~~~~-------------------------~~------------ 142 (195)
T cd01873 118 ------------------CPRVPVILVGCKLDLRYADLDEV-------------------------NR------------ 142 (195)
T ss_pred ------------------CCCCCEEEEEEchhccccccchh-------------------------hh------------
Confidence 13689999999999843110000 00
Q ss_pred cccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEE
Q psy15725 242 RFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFI 321 (355)
Q Consensus 242 ~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 321 (355)
...| +.+.. ...+.+..+++..+++..+++|+
T Consensus 143 -------------------------------------------~~~~---~~~~~--~~~~~V~~~e~~~~a~~~~~~~~ 174 (195)
T cd01873 143 -------------------------------------------ARRP---LARPI--KNADILPPETGRAVAKELGIPYY 174 (195)
T ss_pred -------------------------------------------cccc---ccccc--ccCCccCHHHHHHHHHHhCCEEE
Confidence 0000 00000 11356778888999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHH
Q psy15725 322 ETSAKAGYNVKQLFRRVAAA 341 (355)
Q Consensus 322 ~~SA~~~~gv~~l~~~l~~~ 341 (355)
+|||++|.||+++|+.+++.
T Consensus 175 E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 175 ETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred EcCCCCCCCHHHHHHHHHHh
Confidence 99999999999999999875
No 56
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.95 E-value=3.2e-26 Score=188.27 Aligned_cols=161 Identities=43% Similarity=0.755 Sum_probs=130.2
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|++|||||||+++++++.+... +.++.+.++....+.+++..+.+.+||+|
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~ 57 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKED-----------------------SQHTIGVEFGSKIIRVGGKRVKLQIWDTA 57 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC-----------------------CCCceeeeEEEEEEEECCEEEEEEEEECc
Confidence 5899999999999999999999554433 34555666666677777778899999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID 173 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (355)
|++.|...+..+++.+|++++|||++++.+|.++..|+.+++..
T Consensus 58 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~------------------------------------ 101 (161)
T cd04113 58 GQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARAL------------------------------------ 101 (161)
T ss_pred chHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh------------------------------------
Confidence 99999888888889999999999999988888887776665321
Q ss_pred cccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccC
Q psy15725 174 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRD 253 (355)
Q Consensus 174 ~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~ 253 (355)
T Consensus 102 -------------------------------------------------------------------------------- 101 (161)
T cd04113 102 -------------------------------------------------------------------------------- 101 (161)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725 254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333 (355)
Q Consensus 254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~ 333 (355)
...++|+++++||+|+...+.+...+...+++..+++++++||+++.|+++
T Consensus 102 -----------------------------~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 152 (161)
T cd04113 102 -----------------------------ASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEE 152 (161)
T ss_pred -----------------------------CCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence 013567777777777765566667777778888889999999999999999
Q ss_pred HHHHHHHHc
Q psy15725 334 LFRRVAAAL 342 (355)
Q Consensus 334 l~~~l~~~i 342 (355)
+|+++++.+
T Consensus 153 ~~~~~~~~~ 161 (161)
T cd04113 153 AFLKCARSI 161 (161)
T ss_pred HHHHHHHhC
Confidence 999999864
No 57
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=3.8e-26 Score=188.66 Aligned_cols=101 Identities=44% Similarity=0.836 Sum_probs=83.2
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+.+||+++|++|||||||++++..+.+ ...+.++.+.++....+.+++..+.+.+||
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~-----------------------~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D 58 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTF-----------------------SERQGNTIGVDFTMKTLEIEGKRVKLQIWD 58 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCC-----------------------cccCCCccceEEEEEEEEECCEEEEEEEEE
Confidence 468999999999999999999998544 333445666666667777777778999999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
|||++.|...+..+++.+|++++|||++++.+|+.+..|+..+.
T Consensus 59 ~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~ 102 (165)
T cd01864 59 TAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVE 102 (165)
T ss_pred CCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHH
Confidence 99999988888888888999999999998888888877877664
No 58
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.95 E-value=3.8e-26 Score=187.90 Aligned_cols=99 Identities=31% Similarity=0.727 Sum_probs=82.5
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|++|||||||++++..+.+.+. +.++.+.++......+++..+.+.+|||+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~ 57 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQ-----------------------QLSTYALTLYKHNAKFEGKTILVDFWDTA 57 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC-----------------------cCCceeeEEEEEEEEECCEEEEEEEEeCC
Confidence 5899999999999999999999665443 33444555666666677888899999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
|++.|..++..+++.+|++++|||++++.+|+++..|+..++
T Consensus 58 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~ 99 (161)
T cd04124 58 GQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELR 99 (161)
T ss_pred CchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888888888877664
No 59
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.94 E-value=4.8e-26 Score=189.03 Aligned_cols=163 Identities=40% Similarity=0.680 Sum_probs=132.1
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~ 92 (355)
.+||+++|++|||||||+++++.+. +...+.++++.++....+.+++..+.+.+|||
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~-----------------------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt 58 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGR-----------------------FPERTEATIGVDFRERTVEIDGERIKVQLWDT 58 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC-----------------------CCCccccceeEEEEEEEEEECCeEEEEEEEeC
Confidence 5899999999999999999999844 34445566777777788888888899999999
Q ss_pred CCccccc-ccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725 93 AGQERFR-SLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW 171 (355)
Q Consensus 93 ~g~~~~~-~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (355)
+|+++|. .++..+++.+|++++|||++++.+|+.+..|+..+....
T Consensus 59 ~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--------------------------------- 105 (170)
T cd04115 59 AGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHS--------------------------------- 105 (170)
T ss_pred CChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhc---------------------------------
Confidence 9998886 467778888999999999999888888888877664210
Q ss_pred cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725 172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI 251 (355)
Q Consensus 172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~ 251 (355)
.
T Consensus 106 -------~------------------------------------------------------------------------ 106 (170)
T cd04115 106 -------L------------------------------------------------------------------------ 106 (170)
T ss_pred -------C------------------------------------------------------------------------
Confidence 0
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCC---C
Q psy15725 252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA---G 328 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~---~ 328 (355)
..++|+++|+||.|+...+.+..+++..+++..+++++++||++ +
T Consensus 107 --------------------------------~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~ 154 (170)
T cd04115 107 --------------------------------PNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSEN 154 (170)
T ss_pred --------------------------------CCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCC
Confidence 03567777777777766666777777778887789999999999 9
Q ss_pred CCHHHHHHHHHHHc
Q psy15725 329 YNVKQLFRRVAAAL 342 (355)
Q Consensus 329 ~gv~~l~~~l~~~i 342 (355)
.||+++|..+++.+
T Consensus 155 ~~i~~~f~~l~~~~ 168 (170)
T cd04115 155 DHVEAIFMTLAHKL 168 (170)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999876
No 60
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.94 E-value=5.3e-26 Score=186.90 Aligned_cols=99 Identities=27% Similarity=0.536 Sum_probs=80.5
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~ 92 (355)
++||+++|++|||||||++++.++.+...+. ||.+.. ....+.+++..+.+.+|||
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~-----------------------~t~~~~-~~~~~~~~~~~~~~~i~Dt 56 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYD-----------------------PTIEDS-YRKQVVIDGETCLLDILDT 56 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcC-----------------------Ccchhe-EEEEEEECCEEEEEEEEEC
Confidence 3799999999999999999999966544443 343322 2444566777788999999
Q ss_pred CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
+|+++|..++..+++.+|++++|||++++.+|+.+..|+..+.
T Consensus 57 ~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~ 99 (162)
T cd04138 57 AGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIK 99 (162)
T ss_pred CCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999989988887776654
No 61
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.94 E-value=4.4e-26 Score=188.05 Aligned_cols=98 Identities=34% Similarity=0.591 Sum_probs=80.2
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|++|||||||++++.+..+...+.|+ .+ +........++..+.+.+||||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t-----------------------~~-~~~~~~~~~~~~~~~l~i~Dt~ 56 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPT-----------------------IE-DSYRKQIEIDGEVCLLDILDTA 56 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCc-----------------------hh-hhEEEEEEECCEEEEEEEEECC
Confidence 58999999999999999999996665554433 22 2234455566778899999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
|++++..++..+++.+|++++|||++++++|+.+..|+..+.
T Consensus 57 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~ 98 (164)
T smart00173 57 GQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQIL 98 (164)
T ss_pred CcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998888876653
No 62
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.94 E-value=3.5e-26 Score=193.60 Aligned_cols=95 Identities=27% Similarity=0.631 Sum_probs=83.8
Q ss_pred EcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCCcccc
Q psy15725 19 LGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 98 (355)
Q Consensus 19 vG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 98 (355)
+|++|||||||+++++.+. +...+.+|++.++....+.++++.+.+.+|||+|+++|
T Consensus 1 vG~~~vGKTsLi~r~~~~~-----------------------f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~ 57 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGE-----------------------FEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKF 57 (200)
T ss_pred CCCCCCCHHHHHHHHhcCC-----------------------CCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhh
Confidence 6999999999999999844 44445677788888888888888999999999999999
Q ss_pred cccccccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725 99 RSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT 136 (355)
Q Consensus 99 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~ 136 (355)
..++..+++++|++|+|||++++.+|+.+..|+.++..
T Consensus 58 ~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~ 95 (200)
T smart00176 58 GGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVR 95 (200)
T ss_pred hhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999889888753
No 63
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.94 E-value=7.4e-26 Score=187.87 Aligned_cols=102 Identities=37% Similarity=0.736 Sum_probs=87.8
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
...+||+++|++|||||||+++++.+.+.+. +.++++.++....+.+++..+.+.+|
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~l~i~ 59 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQ-----------------------LFHTIGVEFLNKDLEVDGHFVTLQIW 59 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcC-----------------------cCCceeeEEEEEEEEECCeEEEEEEE
Confidence 4679999999999999999999998554433 44566677777777788888999999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
|+||++++..++..+++.+|++++|||++++++|+.+..|+.++.
T Consensus 60 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 104 (170)
T cd04116 60 DTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFI 104 (170)
T ss_pred eCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHH
Confidence 999999999999999999999999999999999999988887764
No 64
>KOG0081|consensus
Probab=99.94 E-value=3.6e-28 Score=187.10 Aligned_cols=167 Identities=34% Similarity=0.586 Sum_probs=143.9
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec---------Cc
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE---------DR 83 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~---------~~ 83 (355)
-+|.+.+|++||||||++.+.+. +.+......|+|++|-.+.+.++ +.
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD-----------------------~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~ 65 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTD-----------------------GKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQ 65 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecC-----------------------CcccceeEEEeecccccceEEEeccCCCCCCcce
Confidence 46889999999999999999888 44555566777888887777553 34
Q ss_pred EEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccC
Q psy15725 84 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHAN 163 (355)
Q Consensus 84 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (355)
.+.+++|||+|+++|+.+.-.+++.+-+++++||+++.+||-++..|+.+++.+.
T Consensus 66 rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hA------------------------- 120 (219)
T KOG0081|consen 66 RIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHA------------------------- 120 (219)
T ss_pred EEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhh-------------------------
Confidence 6889999999999999999999999999999999999999999999998875320
Q ss_pred ccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccc
Q psy15725 164 SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERF 243 (355)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~ 243 (355)
T Consensus 121 -------------------------------------------------------------------------------- 120 (219)
T KOG0081|consen 121 -------------------------------------------------------------------------------- 120 (219)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEe
Q psy15725 244 RSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323 (355)
Q Consensus 244 ~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 323 (355)
+ . ++.-|++++||+||.+.+.++..++.+++.++++|||++
T Consensus 121 ---------------Y-----------------------c-E~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfET 161 (219)
T KOG0081|consen 121 ---------------Y-----------------------C-ENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFET 161 (219)
T ss_pred ---------------c-----------------------c-CCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeee
Confidence 0 0 455699999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCC
Q psy15725 324 SAKAGYNVKQLFRRVAAALPGMD 346 (355)
Q Consensus 324 SA~~~~gv~~l~~~l~~~i~~~~ 346 (355)
||.+|.||++..+.|+..+.++-
T Consensus 162 SA~tg~Nv~kave~LldlvM~Ri 184 (219)
T KOG0081|consen 162 SACTGTNVEKAVELLLDLVMKRI 184 (219)
T ss_pred ccccCcCHHHHHHHHHHHHHHHH
Confidence 99999999999998888877653
No 65
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.94 E-value=6.4e-26 Score=187.31 Aligned_cols=98 Identities=24% Similarity=0.451 Sum_probs=79.1
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|++|||||||+++++++.+...+.| |.+..+ ...+..+.....+.+|||+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~-----------------------t~~~~~-~~~~~~~~~~~~l~i~Dt~ 57 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIP-----------------------TIEDTY-RQVISCSKNICTLQITDTT 57 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCC-----------------------cchheE-EEEEEECCEEEEEEEEECC
Confidence 7999999999999999999999665544433 333222 3344556677889999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
|+++|..++..+++.+|++++|||++++++|+.+..|+..++
T Consensus 58 G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~ 99 (165)
T cd04140 58 GSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELIC 99 (165)
T ss_pred CCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999888888899999999999999999988888877664
No 66
>KOG0091|consensus
Probab=99.94 E-value=2.9e-27 Score=183.02 Aligned_cols=157 Identities=41% Similarity=0.741 Sum_probs=139.6
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee-cCcEEEEEEE
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTVRLQLW 90 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~ 90 (355)
..+++.++|++-||||||++.|+.+++ .+-.+||+|.+|..+-+.+ ++..+++++|
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkf-----------------------aelsdptvgvdffarlie~~pg~riklqlw 63 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKF-----------------------AELSDPTVGVDFFARLIELRPGYRIKLQLW 63 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcc-----------------------cccCCCccchHHHHHHHhcCCCcEEEEEEe
Confidence 468999999999999999999999554 4445778899988887766 4678999999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
||+|+++|+.+...+++++-++++|||.+|++||+.+..|+++......
T Consensus 64 dtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q------------------------------- 112 (213)
T KOG0091|consen 64 DTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQ------------------------------- 112 (213)
T ss_pred eccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcC-------------------------------
Confidence 9999999999999999999999999999999999999999999875432
Q ss_pred ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceE
Q psy15725 171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230 (355)
Q Consensus 171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i 230 (355)
...++.+++||.|+|+...|.++.++++.++...+..++++|++++.|+++.
T Consensus 113 --------~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA 164 (213)
T KOG0091|consen 113 --------GPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA 164 (213)
T ss_pred --------CCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence 2347778999999999999999999999999999999999999999998863
No 67
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.94 E-value=6.7e-26 Score=215.62 Aligned_cols=252 Identities=21% Similarity=0.190 Sum_probs=155.1
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
.+|+++|++|||||||+|+|.+...... .. .+.+..+.......+++ ..+.+||||
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v---------------------~~-~~~~t~d~~~~~~~~~~--~~~~liDT~ 57 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIV---------------------AD-TPGVTRDRIYGEAEWLG--REFILIDTG 57 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee---------------------CC-CCCCcccceEEEEEECC--cEEEEEECC
Confidence 4799999999999999999988542110 00 12222233333344444 679999999
Q ss_pred Cccc--------ccccccccccCccEEEEEEECCCcchhh--hHHHHHHHHhhhcCCceEEeeccccccccccccccccC
Q psy15725 94 GQER--------FRSLIPSYIRDSTVAVVVYDITNANSFH--QTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHAN 163 (355)
Q Consensus 94 g~~~--------~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (355)
|+.. +......++..+|++++|+|+++..+.. .+..|+..
T Consensus 58 G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~------------------------------ 107 (435)
T PRK00093 58 GIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK------------------------------ 107 (435)
T ss_pred CCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH------------------------------
Confidence 9876 2223445678999999999998864443 23344332
Q ss_pred ccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCe-EEEEeeeeecccc---------------
Q psy15725 164 SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNV--------------- 227 (355)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~-~~~~~sa~~~~~v--------------- 227 (355)
.+.|+++|+||+|..+... ...++ ...+. .++.+|+.++.++
T Consensus 108 -----------------~~~piilv~NK~D~~~~~~----~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~~~~~ 165 (435)
T PRK00093 108 -----------------SNKPVILVVNKVDGPDEEA----DAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILEELPEEE 165 (435)
T ss_pred -----------------cCCcEEEEEECccCccchh----hHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHhhCCccc
Confidence 1789999999999643110 00000 01111 1222222222221
Q ss_pred -----------------------------------------------------ceEEEEEEeCCCcccccc---------
Q psy15725 228 -----------------------------------------------------KQVRLQLWDTAGQERFRS--------- 245 (355)
Q Consensus 228 -----------------------------------------------------~~i~~~i~D~~g~~~~~~--------- 245 (355)
+...+.++||+|......
T Consensus 166 ~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~ 245 (435)
T PRK00093 166 EEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYS 245 (435)
T ss_pred cccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHH
Confidence 122456889999532211
Q ss_pred -c-ccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHH----hhcCcE
Q psy15725 246 -L-IPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKA----KELNVM 319 (355)
Q Consensus 246 -~-~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~ 319 (355)
. ...++..+|++++|+|++++.+.++. .+...+.+ .++|+++++||+|+.+.... .+....+. ...+++
T Consensus 246 ~~~~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~---~~~~~ivv~NK~Dl~~~~~~-~~~~~~~~~~l~~~~~~~ 320 (435)
T PRK00093 246 VIRTLKAIERADVVLLVIDATEGITEQDL-RIAGLALE---AGRALVIVVNKWDLVDEKTM-EEFKKELRRRLPFLDYAP 320 (435)
T ss_pred HHHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCcEEEEEECccCCCHHHH-HHHHHHHHHhcccccCCC
Confidence 1 12356789999999999988776654 23333333 57999999999998633211 11111121 123469
Q ss_pred EEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725 320 FIETSAKAGYNVKQLFRRVAAALPGMD 346 (355)
Q Consensus 320 ~~~~SA~~~~gv~~l~~~l~~~i~~~~ 346 (355)
++++||++|.|++++|+++.+.....+
T Consensus 321 i~~~SA~~~~gv~~l~~~i~~~~~~~~ 347 (435)
T PRK00093 321 IVFISALTGQGVDKLLEAIDEAYENAN 347 (435)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999988765443
No 68
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.94 E-value=9.5e-26 Score=193.36 Aligned_cols=113 Identities=34% Similarity=0.603 Sum_probs=92.1
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|.+|||||||+++|+.+.+.. +.+|++.++.... ...+.+.+|||+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~------------------------~~~Tig~~~~~~~----~~~~~l~iwDt~ 52 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD------------------------TVSTVGGAFYLKQ----WGPYNISIWDTA 52 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC------------------------CCCccceEEEEEE----eeEEEEEEEeCC
Confidence 589999999999999999999966532 2345555554333 245789999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID 173 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (355)
|++.|..++..+++.+|++|+|||++++++|+.+..|...+...
T Consensus 53 G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~------------------------------------ 96 (220)
T cd04126 53 GREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDT------------------------------------ 96 (220)
T ss_pred CcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh------------------------------------
Confidence 99999999999999999999999999999999998877766432
Q ss_pred cccccCCCccEEEEEeecCCCC
Q psy15725 174 DVRTERGSDVIIMLVGNKTDLS 195 (355)
Q Consensus 174 ~~~~~~~~~~piilv~nK~D~~ 195 (355)
...++|+++||||+|+.
T Consensus 97 -----~~~~~piIlVgNK~DL~ 113 (220)
T cd04126 97 -----ANEDCLFAVVGNKLDLT 113 (220)
T ss_pred -----cCCCCcEEEEEECcccc
Confidence 12368999999999984
No 69
>PLN03108 Rab family protein; Provisional
Probab=99.94 E-value=1.1e-25 Score=193.01 Aligned_cols=166 Identities=40% Similarity=0.727 Sum_probs=133.6
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
..+||+++|++|||||||+++++...+.. .+.+|++.++....+.+++..+.+.+||
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~-----------------------~~~~ti~~~~~~~~i~~~~~~i~l~l~D 61 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-----------------------VHDLTIGVEFGARMITIDNKPIKLQIWD 61 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCC-----------------------CCCCCccceEEEEEEEECCEEEEEEEEe
Confidence 46999999999999999999999855433 3455667777777778888888999999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW 171 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (355)
|+|++.+..++..+++.+|++++|||++++.+|+.+..|+..+...
T Consensus 62 t~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~---------------------------------- 107 (210)
T PLN03108 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH---------------------------------- 107 (210)
T ss_pred CCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHh----------------------------------
Confidence 9999998888888888899999999998888888777776554211
Q ss_pred cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725 172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI 251 (355)
Q Consensus 172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~ 251 (355)
T Consensus 108 -------------------------------------------------------------------------------- 107 (210)
T PLN03108 108 -------------------------------------------------------------------------------- 107 (210)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725 252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 331 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv 331 (355)
...+.|+++++||+|+...+.+..++...+++..+++++++||+++.||
T Consensus 108 -------------------------------~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 156 (210)
T PLN03108 108 -------------------------------ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNV 156 (210)
T ss_pred -------------------------------cCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 1135677777777777655666667777788888899999999999999
Q ss_pred HHHHHHHHHHcCCC
Q psy15725 332 KQLFRRVAAALPGM 345 (355)
Q Consensus 332 ~~l~~~l~~~i~~~ 345 (355)
+++|+++++.+.+.
T Consensus 157 ~e~f~~l~~~~~~~ 170 (210)
T PLN03108 157 EEAFIKTAAKIYKK 170 (210)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888654
No 70
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.94 E-value=9.9e-26 Score=190.11 Aligned_cols=98 Identities=30% Similarity=0.574 Sum_probs=78.2
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec-CcEEEEEEEec
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDT 92 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~ 92 (355)
+||+|+|++|||||||+++|.++.+...+ .+|++.++... +... +..+.+.+|||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~-----------------------~~t~~~~~~~~-i~~~~~~~~~l~i~Dt 56 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEY-----------------------VPTVFENYVTN-IQGPNGKIIELALWDT 56 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCC-----------------------CCeeeeeeEEE-EEecCCcEEEEEEEEC
Confidence 58999999999999999999996654444 44445444433 3343 66789999999
Q ss_pred CCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHh
Q psy15725 93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVR 135 (355)
Q Consensus 93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~ 135 (355)
||+++|..+++.+++.+|++++|||++++++|+++. .|+..+.
T Consensus 57 ~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~ 100 (187)
T cd04132 57 AGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVN 100 (187)
T ss_pred CCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 999999999988999999999999999999998875 4766653
No 71
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.94 E-value=1.2e-25 Score=183.99 Aligned_cols=93 Identities=19% Similarity=0.381 Sum_probs=72.3
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|++|||||||+.+++.+.|.+.+. |+ +..+ ...+.+++..+.+.+|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~-----------------------~~-~~~~-~~~i~~~~~~~~l~i~D~~ 55 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLES-----------------------PE-GGRF-KKEVLVDGQSHLLLIRDEG 55 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCC-----------------------CC-ccce-EEEEEECCEEEEEEEEECC
Confidence 589999999999999999999866544432 22 2233 3456677888889999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT 136 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~ 136 (355)
|++. ..+++.+|++++|||++++.+|+++..|++++..
T Consensus 56 g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~ 93 (158)
T cd04103 56 GAPD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSS 93 (158)
T ss_pred CCCc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 9964 2456788999999999999999988888887754
No 72
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.94 E-value=1.7e-25 Score=184.31 Aligned_cols=163 Identities=47% Similarity=0.808 Sum_probs=130.1
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|++|||||||++++.+..+ ...+.++++.++....+..++....+.+||+|
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 57 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF-----------------------SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTA 57 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-----------------------CCCCCCceeeEEEEEEEEECCEEEEEEEEECC
Confidence 5899999999999999999998544 33345566667666777777877899999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID 173 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (355)
|++.+...+..+++.+|++++|||++++.+++.+..|+..+...
T Consensus 58 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~------------------------------------ 101 (164)
T smart00175 58 GQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREY------------------------------------ 101 (164)
T ss_pred ChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh------------------------------------
Confidence 99988888888888999999999998888888877777665321
Q ss_pred cccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccC
Q psy15725 174 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRD 253 (355)
Q Consensus 174 ~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~ 253 (355)
T Consensus 102 -------------------------------------------------------------------------------- 101 (164)
T smart00175 102 -------------------------------------------------------------------------------- 101 (164)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725 254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333 (355)
Q Consensus 254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~ 333 (355)
...++|+++++||+|+.....+..+....+++..+++++++||++|.|+++
T Consensus 102 -----------------------------~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~ 152 (164)
T smart00175 102 -----------------------------ADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEE 152 (164)
T ss_pred -----------------------------CCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 113467777777777655555566666677777789999999999999999
Q ss_pred HHHHHHHHcCC
Q psy15725 334 LFRRVAAALPG 344 (355)
Q Consensus 334 l~~~l~~~i~~ 344 (355)
+|++|.+.+.+
T Consensus 153 l~~~i~~~~~~ 163 (164)
T smart00175 153 AFEELAREILK 163 (164)
T ss_pred HHHHHHHHHhh
Confidence 99999998754
No 73
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.94 E-value=2e-25 Score=189.31 Aligned_cols=98 Identities=24% Similarity=0.363 Sum_probs=80.5
Q ss_pred ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc---CCCceEEEEeeCCCCCCcccCCHHHHHHHH-hhcCcEEEEecCC
Q psy15725 251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTER---GSDVIIMLVGNKTDLSDKRQVSTEEGERKA-KELNVMFIETSAK 326 (355)
Q Consensus 251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-~~~~~~~~~~SA~ 326 (355)
+..+|++++|||++++.+++.+..|++.+.+.. ..++|+++|+||+|+...+.+..++...++ +..++++++|||+
T Consensus 78 ~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak 157 (198)
T cd04142 78 LRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAK 157 (198)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCC
Confidence 345899999999999999999988988876653 367999999999999766666666665554 3567899999999
Q ss_pred CCCCHHHHHHHHHHHcCCCCCC
Q psy15725 327 AGYNVKQLFRRVAAALPGMDST 348 (355)
Q Consensus 327 ~~~gv~~l~~~l~~~i~~~~~~ 348 (355)
+|.||+++|+.+++.+..+...
T Consensus 158 ~g~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 158 YNWHILLLFKELLISATTRGRS 179 (198)
T ss_pred CCCCHHHHHHHHHHHhhccCCC
Confidence 9999999999999988865443
No 74
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.94 E-value=2.1e-25 Score=183.39 Aligned_cols=98 Identities=88% Similarity=1.341 Sum_probs=80.5
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|++|||||||++++++..+. ..+.++.+.++....+..++..+.+.+||||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~ 57 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFD-----------------------NQYQATIGIDFLSKTMYLEDKTVRLQLWDTA 57 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC-----------------------ccCCCceeeeEEEEEEEECCEEEEEEEEECC
Confidence 48999999999999999999985543 3445666777777777778878899999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 134 (355)
|+.++...+..+++.+|++++|||++++++|+.+..|+..+
T Consensus 58 G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~ 98 (161)
T cd01861 58 GQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDV 98 (161)
T ss_pred CcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 99988888888888888888888888888887777776654
No 75
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.94 E-value=2.4e-25 Score=183.58 Aligned_cols=101 Identities=34% Similarity=0.700 Sum_probs=80.9
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec-CcEEEEEEEec
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDT 92 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~ 92 (355)
+||+++|++|||||||++++..+. ..+...+.+|++.++....+.++ +..+.+.+|||
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~---------------------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt 59 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNG---------------------AVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDS 59 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC---------------------CCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEEC
Confidence 489999999999999999998631 12344556677777776666665 56789999999
Q ss_pred CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
||++.+..++..+++.+|++++|||++++++|..+..|++.+.
T Consensus 60 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 102 (164)
T cd04101 60 AGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVR 102 (164)
T ss_pred CCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 9999988888888888999999999988888887777776653
No 76
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.94 E-value=3.6e-25 Score=182.31 Aligned_cols=101 Identities=49% Similarity=0.934 Sum_probs=82.9
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~ 92 (355)
++||+++|++|||||||+++++++.+.. ...++.+.++....+.+++..+.+.+||+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------~~~~t~~~~~~~~~v~~~~~~~~~~i~D~ 57 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSE-----------------------NQESTIGAAFLTQTVNLDDTTVKFEIWDT 57 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------CCCCccceeEEEEEEEECCEEEEEEEEeC
Confidence 4799999999999999999999965443 33455666677777778888899999999
Q ss_pred CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725 93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT 136 (355)
Q Consensus 93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~ 136 (355)
||++++...+..+++.+|++++|||++++++|+....|+..+..
T Consensus 58 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~ 101 (163)
T cd01860 58 AGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQR 101 (163)
T ss_pred CchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 99988888888888888888888888888888877777766643
No 77
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.94 E-value=3.3e-25 Score=187.88 Aligned_cols=100 Identities=41% Similarity=0.791 Sum_probs=85.2
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|++|||||||+++|+.+.+.. ..+.+|++.++....+.+++..+.+.+||++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~----------------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~ 58 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLV----------------------GPYQNTIGAAFVAKRMVVGERVVTLGIWDTA 58 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCC----------------------cCcccceeeEEEEEEEEECCEEEEEEEEECC
Confidence 489999999999999999999855432 2345666777777778888888999999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
|++++..++..+++.+|++++|||++++.+|+.+..|++.++
T Consensus 59 G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~ 100 (193)
T cd04118 59 GSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQ 100 (193)
T ss_pred CchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999998888999999999999999999988888887765
No 78
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.93 E-value=3.9e-25 Score=184.22 Aligned_cols=171 Identities=29% Similarity=0.539 Sum_probs=130.8
Q ss_pred EEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCCc
Q psy15725 16 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 95 (355)
Q Consensus 16 I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~ 95 (355)
|+|+|++|||||||++++.++.+...+.| ++...+ ...+.+++..+.+.+|||||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~-----------------------~~~~~~-~~~~~~~~~~~~~~i~Dt~G~ 56 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVP-----------------------TVFENY-SADVEVDGKPVELGLWDTAGQ 56 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCC-----------------------cEEeee-eEEEEECCEEEEEEEEECCCC
Confidence 68999999999999999999666554433 333333 234556777889999999999
Q ss_pred ccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccccc
Q psy15725 96 ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDD 174 (355)
Q Consensus 96 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (355)
+.|..++..+++.+|++++|||++++++|+.+. .|+..+...
T Consensus 57 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~------------------------------------- 99 (174)
T smart00174 57 EDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHF------------------------------------- 99 (174)
T ss_pred cccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-------------------------------------
Confidence 999999999999999999999999999999985 598888643
Q ss_pred ccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccCC
Q psy15725 175 VRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDS 254 (355)
Q Consensus 175 ~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~ 254 (355)
..++|+++|+||+|+.....
T Consensus 100 -----~~~~piilv~nK~Dl~~~~~------------------------------------------------------- 119 (174)
T smart00174 100 -----CPNTPIILVGTKLDLREDKS------------------------------------------------------- 119 (174)
T ss_pred -----CCCCCEEEEecChhhhhChh-------------------------------------------------------
Confidence 13789999999999732100
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCCCCHHH
Q psy15725 255 TVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQ 333 (355)
Q Consensus 255 ~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~~gv~~ 333 (355)
. .+.+.. ...+.+..+++..+++..+. ++++|||++|.||++
T Consensus 120 ----------------~----~~~~~~-----------------~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 162 (174)
T smart00174 120 ----------------T----LRELSK-----------------QKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVRE 162 (174)
T ss_pred ----------------h----hhhhhc-----------------ccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHH
Confidence 0 000000 01133556677788888886 999999999999999
Q ss_pred HHHHHHHHcCC
Q psy15725 334 LFRRVAAALPG 344 (355)
Q Consensus 334 l~~~l~~~i~~ 344 (355)
+|+.+++.+..
T Consensus 163 lf~~l~~~~~~ 173 (174)
T smart00174 163 VFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHhcC
Confidence 99999988753
No 79
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.93 E-value=2.2e-25 Score=222.44 Aligned_cols=260 Identities=21% Similarity=0.162 Sum_probs=158.0
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
....+|+++|++|||||||+|+|++...... ...|++..+ ............+.+|
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv----------------------~~~pGvT~d--~~~~~~~~~~~~~~li 328 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVV----------------------EDTPGVTRD--RVSYDAEWAGTDFKLV 328 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceee----------------------cCCCCeeEE--EEEEEEEECCEEEEEE
Confidence 3457899999999999999999998542110 011222222 2222222234578999
Q ss_pred ecCCccc--------ccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccccccccc
Q psy15725 91 DTAGQER--------FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHA 162 (355)
Q Consensus 91 D~~g~~~--------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (355)
||||.+. +......++..+|++++|+|+++..... -..|.+.++.
T Consensus 329 DT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~-d~~i~~~Lr~-------------------------- 381 (712)
T PRK09518 329 DTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTST-DERIVRMLRR-------------------------- 381 (712)
T ss_pred eCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHh--------------------------
Confidence 9999763 2233445678999999999998742221 1234444432
Q ss_pred CccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccce-------------
Q psy15725 163 NSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ------------- 229 (355)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~------------- 229 (355)
.+.|+++|+||+|+..... .....+....+. .+.+|+.++.++..
T Consensus 382 ------------------~~~pvIlV~NK~D~~~~~~---~~~~~~~lg~~~-~~~iSA~~g~GI~eLl~~i~~~l~~~~ 439 (712)
T PRK09518 382 ------------------AGKPVVLAVNKIDDQASEY---DAAEFWKLGLGE-PYPISAMHGRGVGDLLDEALDSLKVAE 439 (712)
T ss_pred ------------------cCCCEEEEEECcccccchh---hHHHHHHcCCCC-eEEEECCCCCCchHHHHHHHHhccccc
Confidence 3789999999999743211 001111111111 12334433333321
Q ss_pred ----------------------------------------------------------EEEEEEeCCCcc----------
Q psy15725 230 ----------------------------------------------------------VRLQLWDTAGQE---------- 241 (355)
Q Consensus 230 ----------------------------------------------------------i~~~i~D~~g~~---------- 241 (355)
..+.+|||+|..
T Consensus 440 ~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e 519 (712)
T PRK09518 440 KTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAE 519 (712)
T ss_pred ccccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHH
Confidence 124588999843
Q ss_pred cccccc-cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhh----c
Q psy15725 242 RFRSLI-PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE----L 316 (355)
Q Consensus 242 ~~~~~~-~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~----~ 316 (355)
.+..+. ...+..+|++++|+|+++..+.++.. +...+.. .++|+++|+||+|+.+.... ......+... .
T Consensus 520 ~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~~-~~~~~~~~~~l~~~~ 594 (712)
T PRK09518 520 YYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFRR-QRLERLWKTEFDRVT 594 (712)
T ss_pred HHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhHH-HHHHHHHHHhccCCC
Confidence 222221 23467899999999999998877754 3344433 58999999999999643221 1111111111 2
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHHHcCCCCCC
Q psy15725 317 NVMFIETSAKAGYNVKQLFRRVAAALPGMDST 348 (355)
Q Consensus 317 ~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~ 348 (355)
..+++++||++|.||+++|+.+.+..+...+.
T Consensus 595 ~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~~ 626 (712)
T PRK09518 595 WARRVNLSAKTGWHTNRLAPAMQEALESWDQR 626 (712)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 24789999999999999999999998865443
No 80
>PLN03118 Rab family protein; Provisional
Probab=99.93 E-value=5.8e-25 Score=188.93 Aligned_cols=168 Identities=39% Similarity=0.652 Sum_probs=133.4
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
.-..+||+++|++|||||||+++|++..+. .+.++.+.++....+.+++..+.+.+
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~------------------------~~~~t~~~~~~~~~~~~~~~~~~l~l 66 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVE------------------------DLAPTIGVDFKIKQLTVGGKRLKLTI 66 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCC------------------------CcCCCceeEEEEEEEEECCEEEEEEE
Confidence 345799999999999999999999985432 23456666776677777777889999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhhHHH-HHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK-WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (355)
|||||+++|..++..+++.+|++++|||++++++|+.+.. |...+...
T Consensus 67 ~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~------------------------------- 115 (211)
T PLN03118 67 WDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELY------------------------------- 115 (211)
T ss_pred EECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-------------------------------
Confidence 9999999999999999999999999999999999988754 54443210
Q ss_pred ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP 248 (355)
Q Consensus 169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~ 248 (355)
T Consensus 116 -------------------------------------------------------------------------------- 115 (211)
T PLN03118 116 -------------------------------------------------------------------------------- 115 (211)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCC
Q psy15725 249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 328 (355)
Q Consensus 249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~ 328 (355)
. ...+.|+++|+||.|+...+.+..++...+++..+++++++||++|
T Consensus 116 --------------------------------~-~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~ 162 (211)
T PLN03118 116 --------------------------------S-TNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTR 162 (211)
T ss_pred --------------------------------c-CCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 0 0035677777888887655666666677777778889999999999
Q ss_pred CCHHHHHHHHHHHcCCC
Q psy15725 329 YNVKQLFRRVAAALPGM 345 (355)
Q Consensus 329 ~gv~~l~~~l~~~i~~~ 345 (355)
.|++++|++|.+.+...
T Consensus 163 ~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 163 ENVEQCFEELALKIMEV 179 (211)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999888654
No 81
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.93 E-value=3.2e-25 Score=193.80 Aligned_cols=98 Identities=28% Similarity=0.551 Sum_probs=83.3
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|++|||||||+++|+++.+...| .||++ ++....+.+++..+.+.+|||+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y-----------------------~pTi~-d~~~k~~~i~~~~~~l~I~Dt~ 56 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQY-----------------------TPTIE-DFHRKLYSIRGEVYQLDILDTS 56 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCC-----------------------CCChh-HhEEEEEEECCEEEEEEEEECC
Confidence 58999999999999999999996655444 34444 4555666777888899999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
|++.|..++..++..+|++|+|||++++++|+.+..|++++.
T Consensus 57 G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~ 98 (247)
T cd04143 57 GNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQIL 98 (247)
T ss_pred CChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 999999888888999999999999999999999999988875
No 82
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.93 E-value=5.5e-25 Score=182.28 Aligned_cols=99 Identities=29% Similarity=0.533 Sum_probs=80.7
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~ 92 (355)
.+||+++|.+|||||||++++.++.+... +.++++.. ....+..++..+.+.+|||
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~-----------------------~~~t~~~~-~~~~~~~~~~~~~~~i~Dt 56 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIES-----------------------YDPTIEDS-YRKQVEIDGRQCDLEILDT 56 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcc-----------------------cCCcchhe-EEEEEEECCEEEEEEEEeC
Confidence 37999999999999999999998554333 34444433 3455667777789999999
Q ss_pred CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
||+++|..++..+++.++++++|||++++++|+.+..|...+.
T Consensus 57 ~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~ 99 (168)
T cd04177 57 AGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVL 99 (168)
T ss_pred CCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999989988877766653
No 83
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=3.4e-25 Score=183.59 Aligned_cols=101 Identities=25% Similarity=0.320 Sum_probs=83.5
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+.+||+++|++|||||||++||+++.+. +..+.||++.++....+.+++....+.+||
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~----------------------~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d 60 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFS----------------------LNAYSPTIKPRYAVNTVEVYGQEKYLILRE 60 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCC----------------------cccCCCccCcceEEEEEEECCeEEEEEEEe
Confidence 5689999999999999999999995543 034456666666666677778778899999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 134 (355)
++|++.+..++..+++.+|++++|||++++.+|+.+..|++.+
T Consensus 61 ~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~ 103 (169)
T cd01892 61 VGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKY 103 (169)
T ss_pred cCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHh
Confidence 9999999989988899999999999999988888877776543
No 84
>KOG0095|consensus
Probab=99.93 E-value=1.6e-26 Score=176.09 Aligned_cols=157 Identities=41% Similarity=0.713 Sum_probs=141.8
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~ 92 (355)
-+||++||.+|||||||+.||+.+-|++. ...|+|.+|.-+.+.+++..+++++|||
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppg-----------------------qgatigvdfmiktvev~gekiklqiwdt 63 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPG-----------------------QGATIGVDFMIKTVEVNGEKIKLQIWDT 63 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCC-----------------------CCceeeeeEEEEEEEECCeEEEEEEeec
Confidence 47999999999999999999999666554 3457799999999999999999999999
Q ss_pred CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725 93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI 172 (355)
Q Consensus 93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (355)
.|+++|+.+...+++.+.++|+|||++=.++|+-+..|+.+|+.+..
T Consensus 64 agqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan--------------------------------- 110 (213)
T KOG0095|consen 64 AGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYAN--------------------------------- 110 (213)
T ss_pred cchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhh---------------------------------
Confidence 99999999999999999999999999999999999999999987643
Q ss_pred ccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEE
Q psy15725 173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQ 233 (355)
Q Consensus 173 ~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~ 233 (355)
.++--|+||||.|+.+.+.++...++.+++....-+.++|++...|++.+++.
T Consensus 111 --------~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~ 163 (213)
T KOG0095|consen 111 --------NKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLD 163 (213)
T ss_pred --------cceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHH
Confidence 36778999999999999999999999999988888999999998888876543
No 85
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.93 E-value=1.3e-24 Score=178.57 Aligned_cols=99 Identities=42% Similarity=0.864 Sum_probs=81.8
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|++|||||||++++.+..+.. ...++.+.++....+.+++..+.+.+||+|
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 57 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDP-----------------------DLAATIGVDFKVKTLTVDGKKVKLAIWDTA 57 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc-----------------------ccCCcccceEEEEEEEECCEEEEEEEEECC
Confidence 589999999999999999999854433 344555666666666667777899999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
|++.+..++..+++.+|++++|||++++.+|+.+..|+..+.
T Consensus 58 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~ 99 (161)
T cd01863 58 GQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELE 99 (161)
T ss_pred CchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHH
Confidence 999998888888999999999999999989888877877664
No 86
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.93 E-value=8.1e-25 Score=188.87 Aligned_cols=165 Identities=32% Similarity=0.446 Sum_probs=121.2
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCC-CCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~ 92 (355)
+||+++|++|||||||+++|+.+.+. .. +.++.+.++....+.+++....+.+|||
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~-----------------------~~~t~~~~~~~~~i~~~~~~~~l~i~Dt 57 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHA-----------------------YDASGDDDTYERTVSVDGEESTLVVIDH 57 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccC-----------------------cCCCccccceEEEEEECCEEEEEEEEeC
Confidence 58999999999999999999885543 22 3344444556666777778889999999
Q ss_pred CCccccccccccccc-CccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725 93 AGQERFRSLIPSYIR-DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW 171 (355)
Q Consensus 93 ~g~~~~~~~~~~~~~-~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (355)
+|++. .....+++ .+|++++|||++++.+|+.+..|+..+.
T Consensus 58 ~G~~~--~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~------------------------------------ 99 (221)
T cd04148 58 WEQEM--WTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLR------------------------------------ 99 (221)
T ss_pred CCcch--HHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHH------------------------------------
Confidence 99872 23333445 6777777777777777766665554442
Q ss_pred cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725 172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI 251 (355)
Q Consensus 172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~ 251 (355)
T Consensus 100 -------------------------------------------------------------------------------- 99 (221)
T cd04148 100 -------------------------------------------------------------------------------- 99 (221)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCC
Q psy15725 252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 330 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~g 330 (355)
... ..++|+++|+||+|+...+.+..+++..++...+++++++||++|.|
T Consensus 100 -----------------------------~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~g 150 (221)
T cd04148 100 -----------------------------RNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHN 150 (221)
T ss_pred -----------------------------HhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCC
Confidence 211 13678888888888766666666667777777788999999999999
Q ss_pred HHHHHHHHHHHcCCCCCC
Q psy15725 331 VKQLFRRVAAALPGMDST 348 (355)
Q Consensus 331 v~~l~~~l~~~i~~~~~~ 348 (355)
|+++|++|++.+...+..
T Consensus 151 v~~l~~~l~~~~~~~~~~ 168 (221)
T cd04148 151 VDELLEGIVRQIRLRRDS 168 (221)
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 999999999999754433
No 87
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.93 E-value=1.1e-24 Score=181.13 Aligned_cols=99 Identities=46% Similarity=0.860 Sum_probs=83.4
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|++|||||||++++.+..+... ..++++.++....+.+++..+.+.+||+|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~-----------------------~~~t~~~~~~~~~~~~~~~~~~~~~~D~~ 57 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQ-----------------------YKATIGADFLTKEVTVDDKLVTLQIWDTA 57 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcC-----------------------cCCccceEEEEEEEEECCEEEEEEEEeCC
Confidence 5899999999999999999999654333 34555666766777778888899999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
|++.+..++..+++.+|++++|||++++.+|++...|.+.+.
T Consensus 58 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 99 (172)
T cd01862 58 GQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFL 99 (172)
T ss_pred ChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988888876653
No 88
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.93 E-value=6.6e-25 Score=198.99 Aligned_cols=256 Identities=20% Similarity=0.157 Sum_probs=155.5
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
..|++||.||||||||+|||++....-. ...+. +.-+.......+.+ ..|.++||+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV-----------------~D~pG-----vTRDr~y~~~~~~~--~~f~lIDTg 59 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIV-----------------SDTPG-----VTRDRIYGDAEWLG--REFILIDTG 59 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEe-----------------ecCCC-----CccCCccceeEEcC--ceEEEEECC
Confidence 4699999999999999999999653221 12222 11122223333333 459999999
Q ss_pred Cccccc---------ccccccccCccEEEEEEECCCcchh--hhHHHHHHHHhhhcCCceEEeecccccccccccccccc
Q psy15725 94 GQERFR---------SLIPSYIRDSTVAVVVYDITNANSF--HQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHA 162 (355)
Q Consensus 94 g~~~~~---------~~~~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (355)
|.+... ......+.+||++|||+|....-+- +.+..|+..
T Consensus 60 Gl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~----------------------------- 110 (444)
T COG1160 60 GLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRR----------------------------- 110 (444)
T ss_pred CCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh-----------------------------
Confidence 976432 2344557799999999999884443 234445442
Q ss_pred CccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeecc-----------------
Q psy15725 163 NSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY----------------- 225 (355)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~----------------- 225 (355)
.+.|+++|+||+|-..... ...++....-...+.+|+..+.
T Consensus 111 ------------------~~kpviLvvNK~D~~~~e~----~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~~~e 168 (444)
T COG1160 111 ------------------SKKPVILVVNKIDNLKAEE----LAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLPPDE 168 (444)
T ss_pred ------------------cCCCEEEEEEcccCchhhh----hHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcCCcc
Confidence 2799999999999742110 0000000000011111111111
Q ss_pred --------------------------------------------ccc---------eEEEEEEeCCCc----------cc
Q psy15725 226 --------------------------------------------NVK---------QVRLQLWDTAGQ----------ER 242 (355)
Q Consensus 226 --------------------------------------------~v~---------~i~~~i~D~~g~----------~~ 242 (355)
..+ .-.+.++||+|- +.
T Consensus 169 ~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~ 248 (444)
T COG1160 169 EEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEK 248 (444)
T ss_pred cccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEE
Confidence 111 113467899882 23
Q ss_pred cccc-ccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHH----hhc-
Q psy15725 243 FRSL-IPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKA----KEL- 316 (355)
Q Consensus 243 ~~~~-~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~~~- 316 (355)
|.-. .-..+..++.+++|+|.+.+.+-++. .....+.+ .+.++++|.||||+...+....++...-. ...
T Consensus 249 ~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~ 324 (444)
T COG1160 249 YSVARTLKAIERADVVLLVIDATEGISEQDL-RIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLD 324 (444)
T ss_pred EeehhhHhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhcccc
Confidence 3322 22446789999999999988775542 23333444 68999999999998765333333332211 222
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHHHcCCCCCC
Q psy15725 317 NVMFIETSAKAGYNVKQLFRRVAAALPGMDST 348 (355)
Q Consensus 317 ~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~ 348 (355)
+.+++++||++|.|++++|+++.+.......+
T Consensus 325 ~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~r 356 (444)
T COG1160 325 FAPIVFISALTGQGLDKLFEAIKEIYECATRR 356 (444)
T ss_pred CCeEEEEEecCCCChHHHHHHHHHHHHHhccc
Confidence 25999999999999999999998877655443
No 89
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.93 E-value=2.1e-24 Score=177.32 Aligned_cols=99 Identities=44% Similarity=0.845 Sum_probs=75.5
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|++|||||||++++++..+... ..++....+....+...+..+.+.+||+|
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 57 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEK-----------------------HESTTQASFFQKTVNIGGKRIDLAIWDTA 57 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC-----------------------cCCccceeEEEEEEEECCEEEEEEEEECC
Confidence 5899999999999999999998554333 33444445555556666777889999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
|++.+..+++.+++.+|++++|||++++++++.+..|+.+++
T Consensus 58 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~ 99 (162)
T cd04123 58 GQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELK 99 (162)
T ss_pred chHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 998888888777788888888888888777776666655543
No 90
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.93 E-value=1.9e-24 Score=179.97 Aligned_cols=99 Identities=37% Similarity=0.669 Sum_probs=82.3
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|++|||||||++++..+.+...+.| |. .+.....+.+++..+.+.+||||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~-----------------------t~-~~~~~~~~~~~~~~~~~~i~Dt~ 56 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVP-----------------------TA-FDNFSVVVLVDGKPVRLQLCDTA 56 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-----------------------ce-eeeeeEEEEECCEEEEEEEEECC
Confidence 5899999999999999999998665555443 33 24444556677778899999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhh
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRT 136 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~ 136 (355)
|++++..++..+++.+|++++|||++++.+|+.+. .|+..+..
T Consensus 57 G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~ 100 (173)
T cd04130 57 GQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRK 100 (173)
T ss_pred CChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999874 68887753
No 91
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=4.9e-24 Score=176.64 Aligned_cols=102 Identities=42% Similarity=0.761 Sum_probs=81.9
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
...+||+++|++|||||||++++..+.+... +.++++.++....+.+++..+.+.+|
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~-----------------------~~~t~~~~~~~~~~~~~~~~~~~~~~ 61 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPG-----------------------QGATIGVDFMIKTVEIKGEKIKLQIW 61 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCC-----------------------CCCceeeEEEEEEEEECCEEEEEEEE
Confidence 4569999999999999999999998544333 34555666777777788878899999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
|+||++.+...+..+++.+|++++|||++++.+|+.+..|+.+++
T Consensus 62 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~ 106 (169)
T cd04114 62 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIE 106 (169)
T ss_pred ECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 999998888888888888888888888888877777777766553
No 92
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.93 E-value=1.3e-24 Score=179.38 Aligned_cols=162 Identities=35% Similarity=0.564 Sum_probs=124.0
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 94 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 94 (355)
||+++|++|||||||+++++.+.+.+.+.| +....+ .....++++.+.+.+||+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~-----------------------t~~~~~-~~~~~~~~~~~~~~i~D~~g 56 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDP-----------------------NLESLY-SRQVTIDGEQVSLEILDTAG 56 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCC-----------------------ChHHhc-eEEEEECCEEEEEEEEECCC
Confidence 689999999999999999998555444333 332222 34456677888999999999
Q ss_pred ccc-ccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725 95 QER-FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID 173 (355)
Q Consensus 95 ~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (355)
++. +...+..+++.+|++++|||++++.+|+.+..|+..+....
T Consensus 57 ~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----------------------------------- 101 (165)
T cd04146 57 QQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIK----------------------------------- 101 (165)
T ss_pred CcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-----------------------------------
Confidence 985 34556677889999999999999999988888876654210
Q ss_pred cccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccC
Q psy15725 174 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRD 253 (355)
Q Consensus 174 ~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~ 253 (355)
T Consensus 102 -------------------------------------------------------------------------------- 101 (165)
T cd04146 102 -------------------------------------------------------------------------------- 101 (165)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCC-CHH
Q psy15725 254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY-NVK 332 (355)
Q Consensus 254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~-gv~ 332 (355)
. ...++|+++|+||+|+...+.+...++..+++..+++++++||++|. ||+
T Consensus 102 ---------------------------~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~ 153 (165)
T cd04146 102 ---------------------------K-RDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVH 153 (165)
T ss_pred ---------------------------c-CCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHH
Confidence 0 01367888888888876666677777777888888999999999995 999
Q ss_pred HHHHHHHHHcC
Q psy15725 333 QLFRRVAAALP 343 (355)
Q Consensus 333 ~l~~~l~~~i~ 343 (355)
++|+.|++.+.
T Consensus 154 ~~f~~l~~~~~ 164 (165)
T cd04146 154 SVFHELCREVR 164 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 93
>KOG0083|consensus
Probab=99.93 E-value=1.1e-26 Score=173.77 Aligned_cols=152 Identities=41% Similarity=0.772 Sum_probs=137.0
Q ss_pred EEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCC-CCccccccceeeeeeeeeecCcEEEEEEEecCCc
Q psy15725 17 VFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 95 (355)
Q Consensus 17 ~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~ 95 (355)
+++|++++|||||+-|+.. +.+ .+...+|+|+++-.+.+..+++.+.+++|||.||
T Consensus 1 mllgds~~gktcllir~kd-----------------------gafl~~~fistvgid~rnkli~~~~~kvklqiwdtagq 57 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKD-----------------------GAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQ 57 (192)
T ss_pred CccccCccCceEEEEEecc-----------------------CceecCceeeeeeeccccceeccCCcEEEEEEeeccch
Confidence 3689999999999988877 333 3356789999999999999999999999999999
Q ss_pred ccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccccc
Q psy15725 96 ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDV 175 (355)
Q Consensus 96 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (355)
++|+.....+++.+|+.+++||+.++.||++.+.|+.+|..+.
T Consensus 58 erfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~------------------------------------- 100 (192)
T KOG0083|consen 58 ERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYA------------------------------------- 100 (192)
T ss_pred HHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHH-------------------------------------
Confidence 9999999999999999999999999999999999999997653
Q ss_pred cccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEE
Q psy15725 176 RTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRL 232 (355)
Q Consensus 176 ~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~ 232 (355)
...+.+.++|||+|+.+++.+..++++.+++.++.||.++|+++|.|++-.++
T Consensus 101 ----k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~ 153 (192)
T KOG0083|consen 101 ----KEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFL 153 (192)
T ss_pred ----HhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHH
Confidence 23678899999999999999999999999999999999999999999885443
No 94
>KOG0393|consensus
Probab=99.92 E-value=1.2e-24 Score=178.35 Aligned_cols=179 Identities=31% Similarity=0.538 Sum_probs=149.0
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee-cCcEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTVRLQL 89 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i 89 (355)
...+|+++||+.++|||+|+-.+..+.|+..|.||+ ++.+...+.+ +++.+.+.+
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTV------------------------Fdnys~~v~V~dg~~v~L~L 57 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTV------------------------FDNYSANVTVDDGKPVELGL 57 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeE------------------------EccceEEEEecCCCEEEEee
Confidence 356899999999999999999999988888888877 3555566777 499999999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhhH-HHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (355)
|||.|+++|..+++..+.++|.+++||++.+++||+++ ..|+.+++...
T Consensus 58 wDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c------------------------------ 107 (198)
T KOG0393|consen 58 WDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC------------------------------ 107 (198)
T ss_pred eecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC------------------------------
Confidence 99999999999999999999999999999999999997 56999998653
Q ss_pred ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP 248 (355)
Q Consensus 169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~ 248 (355)
+++|+|+||+|.|+.++.
T Consensus 108 ------------p~vpiiLVGtk~DLr~d~-------------------------------------------------- 125 (198)
T KOG0393|consen 108 ------------PNVPIILVGTKADLRDDP-------------------------------------------------- 125 (198)
T ss_pred ------------CCCCEEEEeehHHhhhCH--------------------------------------------------
Confidence 589999999999984210
Q ss_pred ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC-cEEEEecCCC
Q psy15725 249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKA 327 (355)
Q Consensus 249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~SA~~ 327 (355)
...+.+... ....++.+++.++++..| ..|++|||++
T Consensus 126 -------------------------~~~~~l~~~-----------------~~~~Vt~~~g~~lA~~iga~~y~EcSa~t 163 (198)
T KOG0393|consen 126 -------------------------STLEKLQRQ-----------------GLEPVTYEQGLELAKEIGAVKYLECSALT 163 (198)
T ss_pred -------------------------HHHHHHHhc-----------------cCCcccHHHHHHHHHHhCcceeeeehhhh
Confidence 111122221 234577889999999999 4899999999
Q ss_pred CCCHHHHHHHHHHHcCCCCC
Q psy15725 328 GYNVKQLFRRVAAALPGMDS 347 (355)
Q Consensus 328 ~~gv~~l~~~l~~~i~~~~~ 347 (355)
..|+.+.|+..++......+
T Consensus 164 q~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 164 QKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hCCcHHHHHHHHHHHhcccc
Confidence 99999999999999987654
No 95
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.92 E-value=5.7e-24 Score=177.17 Aligned_cols=171 Identities=27% Similarity=0.507 Sum_probs=130.7
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|++|||||||++++..+.+...+.|+ +. +.....+.+++..+.+.+|||+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t-----------------------~~-~~~~~~~~~~~~~~~~~i~Dt~ 56 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPT-----------------------VF-DHYAVSVTVGGKQYLLGLYDTA 56 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc-----------------------ee-eeeEEEEEECCEEEEEEEEeCC
Confidence 58999999999999999999997665554433 32 2233345567777889999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI 172 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (355)
|++.|...+..+++.+|++++|||+.++.+|+.+. .|+..+...
T Consensus 57 G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~----------------------------------- 101 (174)
T cd04135 57 GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY----------------------------------- 101 (174)
T ss_pred CcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-----------------------------------
Confidence 99999999999999999999999999999999885 688777532
Q ss_pred ccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccccc
Q psy15725 173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIR 252 (355)
Q Consensus 173 ~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~ 252 (355)
..++|+++|+||+|+.+...
T Consensus 102 -------~~~~piivv~nK~Dl~~~~~----------------------------------------------------- 121 (174)
T cd04135 102 -------APNVPYLLVGTQIDLRDDPK----------------------------------------------------- 121 (174)
T ss_pred -------CCCCCEEEEeEchhhhcChh-----------------------------------------------------
Confidence 24789999999999743110
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCCCCH
Q psy15725 253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNV 331 (355)
Q Consensus 253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~~gv 331 (355)
....+.. .....+...++..+++..++ ++++|||++|.||
T Consensus 122 ----------------------~~~~~~~-----------------~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi 162 (174)
T cd04135 122 ----------------------TLARLND-----------------MKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGL 162 (174)
T ss_pred ----------------------hHHHHhh-----------------ccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCH
Confidence 0000001 01344556677777877786 8999999999999
Q ss_pred HHHHHHHHHHc
Q psy15725 332 KQLFRRVAAAL 342 (355)
Q Consensus 332 ~~l~~~l~~~i 342 (355)
+++|+.+++.+
T Consensus 163 ~~~f~~~~~~~ 173 (174)
T cd04135 163 KTVFDEAILAI 173 (174)
T ss_pred HHHHHHHHHHh
Confidence 99999999876
No 96
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.92 E-value=1.2e-23 Score=175.28 Aligned_cols=100 Identities=32% Similarity=0.619 Sum_probs=81.7
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~ 92 (355)
+.||+++|++|||||||++++.++.+.+.+.| |++..+. ..+.++++.+.+.+|||
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~-----------------------t~~~~~~-~~~~~~~~~~~l~i~Dt 56 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVP-----------------------TVFENYV-ADIEVDGKQVELALWDT 56 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-----------------------ccccceE-EEEEECCEEEEEEEEeC
Confidence 46999999999999999999999666555444 4343332 34456777789999999
Q ss_pred CCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhh
Q psy15725 93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRT 136 (355)
Q Consensus 93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~ 136 (355)
+|++.+...+...+.++|++++|||++++++|+.+. .|+..+..
T Consensus 57 ~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~ 101 (175)
T cd01870 57 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 101 (175)
T ss_pred CCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 999999999888999999999999999999998884 58877753
No 97
>KOG0097|consensus
Probab=99.92 E-value=7.8e-25 Score=165.48 Aligned_cols=155 Identities=39% Similarity=0.712 Sum_probs=140.7
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
.-+|-.++|+-|||||||+++|+..+| ......|+|+.|..+.+.+.+..+++++||
T Consensus 10 yifkyiiigdmgvgkscllhqftekkf-----------------------madcphtigvefgtriievsgqkiklqiwd 66 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKF-----------------------MADCPHTIGVEFGTRIIEVSGQKIKLQIWD 66 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHH-----------------------hhcCCcccceecceeEEEecCcEEEEEEee
Confidence 457899999999999999999999554 444556789999999999999999999999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW 171 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (355)
|.|+++|+.....+++++-+.+.|||++++.+...+..|+...+.+
T Consensus 67 tagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~l---------------------------------- 112 (215)
T KOG0097|consen 67 TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL---------------------------------- 112 (215)
T ss_pred cccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhcc----------------------------------
Confidence 9999999999999999999999999999999999999998887654
Q ss_pred cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceE
Q psy15725 172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230 (355)
Q Consensus 172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i 230 (355)
..++..+++++||+|+...+.++.++..+++.+.+..|.++|++++.+++..
T Consensus 113 -------tnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nveda 164 (215)
T KOG0097|consen 113 -------TNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDA 164 (215)
T ss_pred -------CCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHH
Confidence 3468899999999999999999999999999999999999999999988753
No 98
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.92 E-value=2.3e-23 Score=175.59 Aligned_cols=178 Identities=30% Similarity=0.534 Sum_probs=130.8
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~ 92 (355)
+.||+++|++|||||||++++..+.+.+.+. +++...+. ..+.+++....+.+||+
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~-----------------------~t~~~~~~-~~~~~~~~~~~l~i~Dt 56 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYH-----------------------PTVFENYV-TDCRVDGKPVQLALWDT 56 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccC-----------------------CcccceEE-EEEEECCEEEEEEEEEC
Confidence 4699999999999999999999765544433 33332332 34455667788999999
Q ss_pred CCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725 93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW 171 (355)
Q Consensus 93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (355)
+|++.+....+..++.+|++++|||++++++|+.+. .|+..+...
T Consensus 57 ~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~---------------------------------- 102 (187)
T cd04129 57 AGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRY---------------------------------- 102 (187)
T ss_pred CCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh----------------------------------
Confidence 999988887777889999999999999999999986 588887642
Q ss_pred cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725 172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI 251 (355)
Q Consensus 172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~ 251 (355)
..++|+++|+||+|+.+... .
T Consensus 103 --------~~~~piilvgnK~Dl~~~~~-~-------------------------------------------------- 123 (187)
T cd04129 103 --------CPNVPVILVGLKKDLRQDAV-A-------------------------------------------------- 123 (187)
T ss_pred --------CCCCCEEEEeeChhhhhCcc-c--------------------------------------------------
Confidence 13688999999999632100 0
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCCCC
Q psy15725 252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYN 330 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~~g 330 (355)
. + +....+.+...++..+++..++ ++++|||++|.|
T Consensus 124 -----------~-----------------~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 160 (187)
T cd04129 124 -----------K-----------------E---------------EYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEG 160 (187)
T ss_pred -----------c-----------------c---------------ccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCC
Confidence 0 0 0001233344556667777774 899999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCC
Q psy15725 331 VKQLFRRVAAALPGMDSTEN 350 (355)
Q Consensus 331 v~~l~~~l~~~i~~~~~~~~ 350 (355)
|+++|+++++.+..-++.+.
T Consensus 161 v~~~f~~l~~~~~~~~~~~~ 180 (187)
T cd04129 161 VDDVFEAATRAALLVRKSEP 180 (187)
T ss_pred HHHHHHHHHHHHhcccCccc
Confidence 99999999999887776554
No 99
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.91 E-value=1.8e-23 Score=172.21 Aligned_cols=98 Identities=32% Similarity=0.592 Sum_probs=78.4
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|++|||||||+++++...+...+.+ +.+.. .......+++...+.+||+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~-----------------------~~~~~-~~~~~~~~~~~~~~~i~D~~ 56 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEP-----------------------TKADS-YRKKVVLDGEDVQLNILDTA 56 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCC-----------------------cchhh-EEEEEEECCEEEEEEEEECC
Confidence 5899999999999999999998665444333 33322 23445667778899999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
|+..+...+..+++.+|++++|||++++.+|.....|+..+.
T Consensus 57 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~ 98 (164)
T cd04139 57 GQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQIL 98 (164)
T ss_pred ChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888888877766654
No 100
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.91 E-value=7.2e-24 Score=175.43 Aligned_cols=95 Identities=18% Similarity=0.439 Sum_probs=74.9
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+.+||+++|++|||||||++++..+.+.. +.||++.++... ....+.+.+||
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~------------------------~~~t~g~~~~~~----~~~~~~~~l~D 59 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT------------------------TIPTVGFNVETV----TYKNVKFNVWD 59 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc------------------------ccCCcccceEEE----EECCEEEEEEE
Confidence 56899999999999999999998754322 234555544322 12457899999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 134 (355)
|||++++..+++.+++.+|++++|||++++.+|+....|+.++
T Consensus 60 t~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~ 102 (168)
T cd04149 60 VGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRI 102 (168)
T ss_pred CCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHH
Confidence 9999999999999999999999999999988888776665544
No 101
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.91 E-value=4.8e-24 Score=179.08 Aligned_cols=100 Identities=27% Similarity=0.501 Sum_probs=80.0
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee-cCcEEEEEEE
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTVRLQLW 90 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~ 90 (355)
+.+||+++|++|||||||++++..+.+... .||.++++....+.. ++..+.+.+|
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~------------------------~~t~~~~~~~~~~~~~~~~~~~l~l~ 57 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT------------------------VPTKGFNTEKIKVSLGNSKGITFHFW 57 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc------------------------CCccccceeEEEeeccCCCceEEEEE
Confidence 468999999999999999999988544322 345555554444433 3466889999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
||+|++.+..++..+++.+|++++|||++++.+++.+..|+.++.
T Consensus 58 Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~ 102 (183)
T cd04152 58 DVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKIT 102 (183)
T ss_pred ECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888888777776664
No 102
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.91 E-value=4.5e-24 Score=177.89 Aligned_cols=95 Identities=19% Similarity=0.437 Sum_probs=76.8
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+.+||+++|++|||||||++++..+.+. .+.||++.++.... ...+.+.+||
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~------------------------~~~~t~~~~~~~~~----~~~~~l~l~D 63 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV------------------------TTIPTIGFNVETVT----YKNISFTVWD 63 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC------------------------CcCCccccceEEEE----ECCEEEEEEE
Confidence 4699999999999999999999764432 13456665554322 3457899999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 134 (355)
|||++.+..++..+++++|++++|||++++++++....|+..+
T Consensus 64 ~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~ 106 (175)
T smart00177 64 VGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRM 106 (175)
T ss_pred CCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998877776665
No 103
>KOG0395|consensus
Probab=99.91 E-value=1.9e-24 Score=181.55 Aligned_cols=157 Identities=40% Similarity=0.627 Sum_probs=138.6
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
..+||+++|.+|||||+|+-+|....|.+. +.||++ +.+.+.+.+++..+.+.|+|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~-----------------------y~ptie-d~y~k~~~v~~~~~~l~ilD 57 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVED-----------------------YDPTIE-DSYRKELTVDGEVCMLEILD 57 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccc-----------------------cCCCcc-ccceEEEEECCEEEEEEEEc
Confidence 468999999999999999999999655555 455555 77788888999999999999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW 171 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (355)
|+|+++|..++..+++.+|++++||+++++.||+.+..+++.|.+.+.
T Consensus 58 t~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~-------------------------------- 105 (196)
T KOG0395|consen 58 TAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKG-------------------------------- 105 (196)
T ss_pred CCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC--------------------------------
Confidence 999999999999999999999999999999999999999999954432
Q ss_pred cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEE
Q psy15725 172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRL 232 (355)
Q Consensus 172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~ 232 (355)
...+|+++||||+|+...+.++.+++..++..++++++++|++...++++++.
T Consensus 106 --------~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~ 158 (196)
T KOG0395|consen 106 --------RDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFY 158 (196)
T ss_pred --------cCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHH
Confidence 23699999999999999999999999999999999999999999877776543
No 104
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.91 E-value=1.3e-23 Score=174.09 Aligned_cols=93 Identities=23% Similarity=0.467 Sum_probs=75.0
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 94 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 94 (355)
||+++|++|||||||++++.+..+.. +.||++.++.. ++.....+.+|||||
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~------------------------~~~T~~~~~~~----~~~~~~~i~l~Dt~G 52 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ------------------------PIPTIGFNVET----VEYKNLKFTIWDVGG 52 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC------------------------cCCcCceeEEE----EEECCEEEEEEECCC
Confidence 68999999999999999999854322 34555555432 233457899999999
Q ss_pred cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
+..+...+..+++.+|++++|||++++++|..+..|+..+.
T Consensus 53 ~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~ 93 (169)
T cd04158 53 KHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLL 93 (169)
T ss_pred ChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988887776663
No 105
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.91 E-value=8.5e-24 Score=178.90 Aligned_cols=161 Identities=19% Similarity=0.296 Sum_probs=113.8
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec-----CcEEEEE
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-----DRTVRLQ 88 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~ 88 (355)
+||+++|++|||||||++++..+.+... +.+|++.++..+.+.++ ++.+.+.
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~-----------------------~~~Tig~~~~~k~~~~~~~~~~~~~~~l~ 57 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGR-----------------------PSWTVGCSVDVKHHTYKEGTPEEKTFFVE 57 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCC-----------------------CCcceeeeEEEEEEEEcCCCCCCcEEEEE
Confidence 5899999999999999999999655444 44555656655555543 4678999
Q ss_pred EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725 89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168 (355)
Q Consensus 89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (355)
+|||+|++.|..++..+++++|++|+|||+++++||+++..|+.++....... .......
T Consensus 58 IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~--------------------~~~~~~~ 117 (202)
T cd04102 58 LWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFP--------------------TGLLVTN 117 (202)
T ss_pred EEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccc--------------------ccccccc
Confidence 99999999999999999999999999999999999999999999997542100 0000000
Q ss_pred ccccccccccCCCccEEEEEeecCCCCcccceehhh----hhhhhhccCeEEEEe
Q psy15725 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEE----GERKAKELNVMFIET 219 (355)
Q Consensus 169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~----~~~~~~~~~~~~~~~ 219 (355)
... ........++|+++||||+|+.+++.+.... ...++++.+.+....
T Consensus 118 ~~~--~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~ 170 (202)
T cd04102 118 GDY--DSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINL 170 (202)
T ss_pred ccc--cccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEE
Confidence 000 0000112479999999999997766554443 234455666654444
No 106
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.91 E-value=4.4e-24 Score=175.11 Aligned_cols=93 Identities=19% Similarity=0.461 Sum_probs=74.1
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|.+|||||||++++..+.+.. +.||++.++. .+ ....+.+.+||+|
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~------------------------~~pt~g~~~~--~~--~~~~~~~~l~D~~ 52 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT------------------------TIPTIGFNVE--TV--EYKNISFTVWDVG 52 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc------------------------cCCCCCcceE--EE--EECCEEEEEEECC
Confidence 589999999999999999998755432 2345555442 22 2345789999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 134 (355)
|++++..++..+++++|++++|||++++.+|+....|+..+
T Consensus 53 G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~ 93 (159)
T cd04150 53 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRM 93 (159)
T ss_pred CCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998898877766554
No 107
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.91 E-value=1.4e-23 Score=175.75 Aligned_cols=95 Identities=18% Similarity=0.458 Sum_probs=75.5
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+.+||+++|++|||||||++++..+.+.. +.||++.++.. ++...+.+++||
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~------------------------~~pt~g~~~~~----~~~~~~~~~i~D 67 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT------------------------TIPTIGFNVET----VEYKNISFTVWD 67 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCcc------------------------ccCCcceeEEE----EEECCEEEEEEE
Confidence 45899999999999999999998754432 24555655432 233457899999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 134 (355)
+||++.+..++..+++++|++|+|||++++++++....|+..+
T Consensus 68 ~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~ 110 (181)
T PLN00223 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM 110 (181)
T ss_pred CCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998887766555443
No 108
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.91 E-value=5.9e-23 Score=176.99 Aligned_cols=107 Identities=27% Similarity=0.625 Sum_probs=88.2
Q ss_pred CCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEE
Q psy15725 6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV 85 (355)
Q Consensus 6 ~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 85 (355)
+.....+.+||+++|++|||||||+++++.+.+ ...+.+|++.++....+..+++.+
T Consensus 2 ~~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~-----------------------~~~~~~t~~~~~~~~~~~~~~~~i 58 (215)
T PTZ00132 2 QQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEF-----------------------EKKYIPTLGVEVHPLKFYTNCGPI 58 (215)
T ss_pred ccccCCCCceEEEECCCCCCHHHHHHHHHhCCC-----------------------CCCCCCccceEEEEEEEEECCeEE
Confidence 455677889999999999999999999988544 344556667777777777788889
Q ss_pred EEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 86 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 86 ~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
.+.+|||+|++.|..++..+++.++++++|||++++.+|..+..|+..+.
T Consensus 59 ~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~ 108 (215)
T PTZ00132 59 CFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIV 108 (215)
T ss_pred EEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 99999999999998888888888899999999888888887777766653
No 109
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.91 E-value=5.7e-23 Score=172.14 Aligned_cols=168 Identities=33% Similarity=0.478 Sum_probs=125.7
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
.||+++|++|||||||++++....+...+.| +++..+ ...+.+++..+.+.+||||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~-----------------------t~~~~~-~~~~~~~~~~~~~~l~D~~ 57 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYP-----------------------TIENTF-SKIIRYKGQDYHLEIVDTA 57 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCc-----------------------chhhhE-EEEEEECCEEEEEEEEECC
Confidence 6899999999999999999998665544433 333222 2334455666789999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID 173 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (355)
|+++|...+..++..+|++++|||.++..+|+.+..|+..+.+.
T Consensus 58 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~------------------------------------ 101 (180)
T cd04137 58 GQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDM------------------------------------ 101 (180)
T ss_pred ChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh------------------------------------
Confidence 99999888888888899999999999888888777665544221
Q ss_pred cccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccC
Q psy15725 174 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRD 253 (355)
Q Consensus 174 ~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~ 253 (355)
T Consensus 102 -------------------------------------------------------------------------------- 101 (180)
T cd04137 102 -------------------------------------------------------------------------------- 101 (180)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725 254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333 (355)
Q Consensus 254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~ 333 (355)
....+.|+++++||+|+...+.+...+...+++..+++++++||++|.|+++
T Consensus 102 ----------------------------~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 153 (180)
T cd04137 102 ----------------------------LGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEE 153 (180)
T ss_pred ----------------------------cCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 0013567777777777755555555555566666778999999999999999
Q ss_pred HHHHHHHHcCCCCCCC
Q psy15725 334 LFRRVAAALPGMDSTE 349 (355)
Q Consensus 334 l~~~l~~~i~~~~~~~ 349 (355)
+|.+|.+.+.......
T Consensus 154 l~~~l~~~~~~~~~~~ 169 (180)
T cd04137 154 AFELLIEEIEKVENPL 169 (180)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999988665444
No 110
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.90 E-value=7.2e-23 Score=174.12 Aligned_cols=97 Identities=30% Similarity=0.597 Sum_probs=77.7
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 94 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 94 (355)
||+++|++|||||||+++|+.+.+...+.+ ++. ++....+.+.+..+.+++||+||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~-----------------------t~~-~~~~~~~~~~~~~~~l~i~D~~G 56 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRR-----------------------TVE-EMHRKEYEVGGVSLTLDILDTSG 56 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCC-----------------------chh-hheeEEEEECCEEEEEEEEECCC
Confidence 689999999999999999999665544433 332 23344555666678899999999
Q ss_pred cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
+..|..++..++..+|++++|||++++.+|+.+..|+..+.
T Consensus 57 ~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~ 97 (198)
T cd04147 57 SYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEIL 97 (198)
T ss_pred chhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 99998888888899999999999999888888887776664
No 111
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.90 E-value=1e-23 Score=176.69 Aligned_cols=95 Identities=18% Similarity=0.466 Sum_probs=75.4
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
..+||+++|++|||||||++++..+.+.. +.||++.++.. ++...+.+.+||
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~------------------------~~~T~~~~~~~----~~~~~~~~~l~D 67 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT------------------------TIPTIGFNVET----VEYKNLKFTMWD 67 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc------------------------cCCccccceEE----EEECCEEEEEEE
Confidence 35899999999999999999998754432 23455554432 223457899999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 134 (355)
|||++.+...+..+++.+|++|+|||++++++|.....++..+
T Consensus 68 ~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~ 110 (182)
T PTZ00133 68 VGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERM 110 (182)
T ss_pred CCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888776655544
No 112
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.90 E-value=8.5e-23 Score=167.38 Aligned_cols=97 Identities=34% Similarity=0.582 Sum_probs=77.2
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 94 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 94 (355)
||+++|++|||||||++++++..+... +.++.+ +........++..+.+.+||+||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~-----------------------~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g 56 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEE-----------------------YDPTIE-DSYRKTIVVDGETYTLDILDTAG 56 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcC-----------------------cCCChh-HeEEEEEEECCEEEEEEEEECCC
Confidence 699999999999999999998554333 333434 34445556666678999999999
Q ss_pred cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
+..+...+..+++.+|++++|||+++++++.+...|...+.
T Consensus 57 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~ 97 (160)
T cd00876 57 QEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQIL 97 (160)
T ss_pred hHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 99988888888999999999999999888888877766654
No 113
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.90 E-value=1.7e-22 Score=167.66 Aligned_cols=99 Identities=33% Similarity=0.647 Sum_probs=78.6
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|++|||||||+++|++..+...+.|+ .. +........++..+.+.+||+|
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~-----------------------~~-~~~~~~~~~~~~~~~l~~~D~~ 56 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPT-----------------------VF-DNYSATVTVDGKQVNLGLWDTA 56 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc-----------------------ee-eeeEEEEEECCEEEEEEEEeCC
Confidence 58999999999999999999996654443333 22 2233444556778899999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhH-HHHHHHHhh
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRT 136 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~ 136 (355)
|++++...+...++.+|++++|||++++.+|... ..|+..+..
T Consensus 57 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~ 100 (171)
T cd00157 57 GQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRH 100 (171)
T ss_pred CcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 9999988888889999999999999999999775 457777653
No 114
>PLN00023 GTP-binding protein; Provisional
Probab=99.90 E-value=5e-23 Score=182.23 Aligned_cols=156 Identities=21% Similarity=0.326 Sum_probs=118.3
Q ss_pred CCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec-----
Q psy15725 7 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE----- 81 (355)
Q Consensus 7 ~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----- 81 (355)
...+...+||+++|+.|||||||+++|.++.+ ...+.+|++.++..+.+.++
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F-----------------------~~~~~pTIG~d~~ik~I~~~~~~~~ 71 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSS-----------------------IARPPQTIGCTVGVKHITYGSPGSS 71 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCc-----------------------ccccCCceeeeEEEEEEEECCcccc
Confidence 34567789999999999999999999999554 34455666777665555543
Q ss_pred --------CcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccc
Q psy15725 82 --------DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETN 153 (355)
Q Consensus 82 --------~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (355)
++.+.++||||+|++.|..++..+++++|++|+|||++++.+|+++..|++++....... .
T Consensus 72 ~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s-~---------- 140 (334)
T PLN00023 72 SNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFS-A---------- 140 (334)
T ss_pred cccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccc-c----------
Confidence 246889999999999999999999999999999999999999999999999997542100 0
Q ss_pred cccccccccCccccCccccccccccCCCccEEEEEeecCCCCccc---c---eehhhhhhhhhccCe
Q psy15725 154 FTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR---Q---VSTEEGERKAKELNV 214 (355)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~---~---v~~~~~~~~~~~~~~ 214 (355)
+.. .......++|++|||||+|+...+ . +..+++.+++++.+.
T Consensus 141 ---------p~~---------s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 141 ---------PLG---------SGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred ---------ccc---------cccccCCCCcEEEEEECccccccccccccccccHHHHHHHHHHcCC
Confidence 000 000012368999999999996542 2 356788889888775
No 115
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.90 E-value=1.7e-22 Score=167.01 Aligned_cols=98 Identities=21% Similarity=0.451 Sum_probs=74.4
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|++|||||||++++.++.+++.++++. .++ .....+++..+.+.+||||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~------------------------~~~-~~~~~~~~~~~~~~i~Dt~ 55 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL------------------------PEI-TIPADVTPERVPTTIVDTS 55 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc------------------------cce-EeeeeecCCeEEEEEEeCC
Confidence 489999999999999999999977654432211 011 2223345677899999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhh
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRT 136 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~ 136 (355)
|.+.+...+..+++.+|++++|||++++.+|+.+. .|++.++.
T Consensus 56 G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~ 99 (166)
T cd01893 56 SRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRR 99 (166)
T ss_pred CchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 99888777777788999999999999999998874 67776653
No 116
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.90 E-value=1.9e-23 Score=172.19 Aligned_cols=139 Identities=20% Similarity=0.294 Sum_probs=110.5
Q ss_pred EEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCCc
Q psy15725 16 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 95 (355)
Q Consensus 16 I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~ 95 (355)
|+++|++|||||||+++|.++.+...+ .||++++. ..++++.+.+.+||+||+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~-----------------------~pt~g~~~----~~i~~~~~~l~i~Dt~G~ 54 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESV-----------------------VPTTGFNS----VAIPTQDAIMELLEIGGS 54 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccc-----------------------cccCCcce----EEEeeCCeEEEEEECCCC
Confidence 799999999999999999986554443 44545432 234456789999999999
Q ss_pred ccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccccc
Q psy15725 96 ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDV 175 (355)
Q Consensus 96 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (355)
++|..++..+++++|++++|||++++.+|.....|+.++...
T Consensus 55 ~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~-------------------------------------- 96 (164)
T cd04162 55 QNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQH-------------------------------------- 96 (164)
T ss_pred cchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhC--------------------------------------
Confidence 999999999999999999999999999999988888877421
Q ss_pred cccCCCccEEEEEeecCCCCcccceeh----hhhhhhhhccCeEEEEeeeee
Q psy15725 176 RTERGSDVIIMLVGNKTDLSDKRQVST----EEGERKAKELNVMFIETSAKA 223 (355)
Q Consensus 176 ~~~~~~~~piilv~nK~D~~~~~~v~~----~~~~~~~~~~~~~~~~~sa~~ 223 (355)
..++|+++|+||+|+...+.+.. .....++++.+..++++|+.+
T Consensus 97 ----~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~ 144 (164)
T cd04162 97 ----PPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDD 144 (164)
T ss_pred ----CCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecC
Confidence 14799999999999976654432 344566666778888888887
No 117
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.89 E-value=1.6e-22 Score=168.38 Aligned_cols=97 Identities=21% Similarity=0.489 Sum_probs=75.1
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
....+||+++|++|||||||++++.+..+. .+.+|+++.... +.++ ...+.+
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~------------------------~~~~t~g~~~~~--~~~~--~~~l~l 62 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDID------------------------TISPTLGFQIKT--LEYE--GYKLNI 62 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCC------------------------CcCCccccceEE--EEEC--CEEEEE
Confidence 345689999999999999999999874321 223455543332 2233 478999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 134 (355)
|||||++.+...+..+++.+|++++|||++++.+|+....|+..+
T Consensus 63 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 107 (173)
T cd04154 63 WDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKEL 107 (173)
T ss_pred EECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999998888888999999999999999998888877776655
No 118
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.89 E-value=8.7e-23 Score=166.72 Aligned_cols=153 Identities=53% Similarity=0.891 Sum_probs=129.3
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|++|||||||++++.+..+.. .+.+|.+.++....+..++....+.+||+|
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~-----------------------~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~ 57 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDE-----------------------NYKSTIGVDFKSKTIEIDGKTVKLQIWDTA 57 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCC-----------------------ccCCceeeeeEEEEEEECCEEEEEEEEecC
Confidence 589999999999999999999855433 345566777777777777788899999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID 173 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (355)
|+..+...+..+++++|++++|||++++++++.+..|+..+....
T Consensus 58 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~----------------------------------- 102 (159)
T cd00154 58 GQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYA----------------------------------- 102 (159)
T ss_pred ChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-----------------------------------
Confidence 999999999999999999999999999999999999999887542
Q ss_pred cccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceE
Q psy15725 174 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230 (355)
Q Consensus 174 ~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i 230 (355)
....|+++++||+|...+.....++...+....+.+++++|+.++.+++++
T Consensus 103 ------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 153 (159)
T cd00154 103 ------PENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEEL 153 (159)
T ss_pred ------CCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Confidence 137999999999999755666677777888888899999999998877654
No 119
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.88 E-value=2.9e-22 Score=166.87 Aligned_cols=95 Identities=24% Similarity=0.506 Sum_probs=73.2
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+.+||+++|++|||||||++++..+.+... .||++.++.. .. .....+.+||
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~------------------------~~t~~~~~~~--~~--~~~~~~~l~D 65 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHT------------------------SPTIGSNVEE--IV--YKNIRFLMWD 65 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCc------------------------CCccccceEE--EE--ECCeEEEEEE
Confidence 468999999999999999999998654332 2344433322 22 2357899999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 134 (355)
+||++.+...+..+++.+|++++|||+++++++.....|+..+
T Consensus 66 ~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~ 108 (174)
T cd04153 66 IGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKM 108 (174)
T ss_pred CCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988887766555444
No 120
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.88 E-value=1.1e-21 Score=162.29 Aligned_cols=100 Identities=23% Similarity=0.392 Sum_probs=75.3
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 94 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 94 (355)
+|+++|++|||||||++++.+...... ......+.+|++.++... .+ ....+.+|||||
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~-----------------~~~~~~~~~t~~~~~~~~--~~--~~~~~~l~Dt~G 59 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYK-----------------GLPPSKITPTVGLNIGTI--EV--GNARLKFWDLGG 59 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhccccc-----------------CCcccccCCccccceEEE--EE--CCEEEEEEECCC
Confidence 589999999999999999987432100 122334556666665332 23 257899999999
Q ss_pred cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
++.+...+..+++.+|++++|||+++++++.....|+..+.
T Consensus 60 ~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~ 100 (167)
T cd04160 60 QESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVL 100 (167)
T ss_pred ChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHH
Confidence 99999888889999999999999999888887777766653
No 121
>PTZ00099 rab6; Provisional
Probab=99.88 E-value=2.6e-21 Score=160.77 Aligned_cols=77 Identities=75% Similarity=1.241 Sum_probs=68.7
Q ss_pred CCCCCccccccceeeeeeeeeecCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 59 DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 59 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
+.|.+.+.||++.++..+.+.++++.+.+.+|||+|++.|..++..+++++|++|+|||++++++|+.+..|+..+.
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~ 79 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDIL 79 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 45667788999999998888899999999999999999999999999999999999999999999988888877664
No 122
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.88 E-value=4.1e-21 Score=159.79 Aligned_cols=96 Identities=25% Similarity=0.494 Sum_probs=77.5
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+.+||+++|..|||||||++++..+... .+.||.|++.....+ ....+.+|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~------------------------~~~pT~g~~~~~i~~----~~~~~~~~ 63 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS------------------------ETIPTIGFNIEEIKY----KGYSLTIW 63 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE------------------------EEEEESSEEEEEEEE----TTEEEEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc------------------------ccCcccccccceeee----CcEEEEEE
Confidence 57899999999999999999999874321 145777766554443 45789999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 134 (355)
|++|+..++..|+.++..+|++|||+|.++.+.+......+..+
T Consensus 64 d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~l 107 (175)
T PF00025_consen 64 DLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKEL 107 (175)
T ss_dssp EESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHH
T ss_pred eccccccccccceeeccccceeEEEEecccceeecccccchhhh
Confidence 99999999999999999999999999999988777665555444
No 123
>KOG0070|consensus
Probab=99.87 E-value=9.7e-22 Score=157.16 Aligned_cols=97 Identities=19% Similarity=0.457 Sum_probs=82.0
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
..+.++|+++|-.++||||++.++..+++ ..+ .||+|++++...+ +++.+.+
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~-----------------------vtt-vPTiGfnVE~v~y----kn~~f~v 65 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEI-----------------------VTT-VPTIGFNVETVEY----KNISFTV 65 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCc-----------------------ccC-CCccccceeEEEE----cceEEEE
Confidence 45789999999999999999999988543 222 7888988887774 4789999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 134 (355)
||++|++.++.+|+.|+.+.+++|||+|.+|++.+...+..+..+
T Consensus 66 WDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~ 110 (181)
T KOG0070|consen 66 WDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRM 110 (181)
T ss_pred EecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988887665544444
No 124
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.87 E-value=3.5e-21 Score=161.07 Aligned_cols=103 Identities=17% Similarity=0.234 Sum_probs=65.2
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee-----cCcEEEEEE
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-----EDRTVRLQL 89 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----~~~~~~~~i 89 (355)
+|+++|++|||||||+++|++....-... .+...+. . . ....++.+.++....... +++.+.+++
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~-------~~~~~~~-~-~-~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l 71 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKR-------EMKEQVL-D-S-MDLERERGITIKAQTVRLNYKAKDGQEYLLNL 71 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcC-------CCceEec-c-C-ChhHHHCCCeEecceEEEEEecCCCCcEEEEE
Confidence 69999999999999999999843100000 0000000 0 0 001122333443333222 566788999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhhH
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~ 127 (355)
|||||+++|...+..+++.+|++++|||+++..+++..
T Consensus 72 ~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~ 109 (179)
T cd01890 72 IDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTL 109 (179)
T ss_pred EECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhH
Confidence 99999999888888888888998888888775444443
No 125
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.87 E-value=4.3e-21 Score=162.21 Aligned_cols=97 Identities=21% Similarity=0.384 Sum_probs=75.0
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+..||+++|++|||||||++++.++.+. .+. ||++... ..+.++ ...+.+|
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~-----------------------~T~~~~~--~~i~~~--~~~~~l~ 68 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHV-----------------------PTLHPTS--EELTIG--NIKFKTF 68 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccC-----------------------CccCcce--EEEEEC--CEEEEEE
Confidence 45789999999999999999999986542 222 2333222 122233 3678999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
|+||+..+...+..+++.+|++++|+|+++..+|.....|+..+.
T Consensus 69 D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~ 113 (190)
T cd00879 69 DLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLL 113 (190)
T ss_pred ECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHH
Confidence 999999998888889999999999999999988987777777664
No 126
>KOG0073|consensus
Probab=99.86 E-value=4.9e-21 Score=148.91 Aligned_cols=91 Identities=21% Similarity=0.447 Sum_probs=74.1
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
+.+.++|+++|..|+||||++++|.+.. .+...||.+++..... .+...+++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~------------------------~~~i~pt~gf~Iktl~----~~~~~L~i 64 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED------------------------TDTISPTLGFQIKTLE----YKGYTLNI 64 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC------------------------ccccCCccceeeEEEE----ecceEEEE
Confidence 3458999999999999999999998732 4455777777654443 56689999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhhHH
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 128 (355)
||.+|+..++..|+.|+.++|++|+|||.+|+..|+.-.
T Consensus 65 wDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~ 103 (185)
T KOG0073|consen 65 WDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECK 103 (185)
T ss_pred EEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHH
Confidence 999999999999999999999999999998876666543
No 127
>KOG0078|consensus
Probab=99.86 E-value=1.2e-21 Score=159.97 Aligned_cols=118 Identities=45% Similarity=0.781 Sum_probs=114.0
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE 307 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~ 307 (355)
..+.+++|||+|++.|+++...||.+|+++++|||+++..+|+++..|++.+.++..+++|++||+||+|+...+.+..+
T Consensus 59 ~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e 138 (207)
T KOG0078|consen 59 KKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKE 138 (207)
T ss_pred eEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHH
Confidence 67889999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred HHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 308 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 308 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
.+..+++.+|++++|+||++|.||++.|-.|++.|..+
T Consensus 139 ~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k 176 (207)
T KOG0078|consen 139 RGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQK 176 (207)
T ss_pred HHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999854
No 128
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.86 E-value=1.2e-20 Score=158.52 Aligned_cols=97 Identities=21% Similarity=0.321 Sum_probs=74.5
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+.++|+++|.+|||||||++++.++.+.. +.||.+..... +. .....+.+|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~------------------------~~~t~~~~~~~--~~--~~~~~~~~~ 66 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ------------------------HQPTQHPTSEE--LA--IGNIKFTTF 66 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc------------------------cCCccccceEE--EE--ECCEEEEEE
Confidence 456999999999999999999999854322 12233322211 11 234689999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
|+||+..+...+..++..+|++++|+|++++.++.....|+.++.
T Consensus 67 D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~ 111 (184)
T smart00178 67 DLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALL 111 (184)
T ss_pred ECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988888777766653
No 129
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.86 E-value=3.4e-21 Score=159.29 Aligned_cols=142 Identities=19% Similarity=0.268 Sum_probs=105.6
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 94 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 94 (355)
+|+++|++|||||||++++.+. +.. .+.||++... ..+. .....+.+||+||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~-----------------------~~~~t~g~~~--~~~~--~~~~~~~i~D~~G 52 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPK-----------------------KVAPTVGFTP--TKLR--LDKYEVCIFDLGG 52 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCc-----------------------cccCcccceE--EEEE--ECCEEEEEEECCC
Confidence 4899999999999999999874 322 3445555442 2222 3457899999999
Q ss_pred cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccccc
Q psy15725 95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDD 174 (355)
Q Consensus 95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (355)
++.++.++..+++.+|++++|||++++.+|+....|+..+...
T Consensus 53 ~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~------------------------------------- 95 (167)
T cd04161 53 GANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQH------------------------------------- 95 (167)
T ss_pred cHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcC-------------------------------------
Confidence 9999999999999999999999999999999999898887532
Q ss_pred ccccCCCccEEEEEeecCCCCcccc----eehhhhhhhhhcc--CeEEEEeeeeec
Q psy15725 175 VRTERGSDVIIMLVGNKTDLSDKRQ----VSTEEGERKAKEL--NVMFIETSAKAG 224 (355)
Q Consensus 175 ~~~~~~~~~piilv~nK~D~~~~~~----v~~~~~~~~~~~~--~~~~~~~sa~~~ 224 (355)
....++|+++|+||+|+.+.+. +......++++.. ...+.++|+.++
T Consensus 96 ---~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g 148 (167)
T cd04161 96 ---PRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEG 148 (167)
T ss_pred ---ccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeC
Confidence 1224789999999999976542 1222223343322 357888999887
No 130
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.85 E-value=3.9e-21 Score=158.01 Aligned_cols=153 Identities=18% Similarity=0.258 Sum_probs=108.3
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 94 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 94 (355)
+|+++|++|||||||+++|.+... ....+.||+++.+.. +......+.+|||||
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~----------------------~~~~~~~t~g~~~~~----~~~~~~~~~l~Dt~G 54 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENA----------------------QSQIIVPTVGFNVES----FEKGNLSFTAFDMSG 54 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCC----------------------CcceecCccccceEE----EEECCEEEEEEECCC
Confidence 589999999999999999998431 122334555544322 123457899999999
Q ss_pred cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccccc
Q psy15725 95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDD 174 (355)
Q Consensus 95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (355)
++++..++..+++.+|++++|+|++++.+|.....|+..+....
T Consensus 55 ~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~------------------------------------ 98 (162)
T cd04157 55 QGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHP------------------------------------ 98 (162)
T ss_pred CHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCc------------------------------------
Confidence 99999999999999999999999999999988888877764320
Q ss_pred ccccCCCccEEEEEeecCCCCccccee-hhhhhhhh--hccCeEEEEeeeeeccccceEE
Q psy15725 175 VRTERGSDVIIMLVGNKTDLSDKRQVS-TEEGERKA--KELNVMFIETSAKAGYNVKQVR 231 (355)
Q Consensus 175 ~~~~~~~~~piilv~nK~D~~~~~~v~-~~~~~~~~--~~~~~~~~~~sa~~~~~v~~i~ 231 (355)
.....++|+++|+||+|+.+..... ..+..... ......++++|+.++.++++++
T Consensus 99 --~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~ 156 (162)
T cd04157 99 --DIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGV 156 (162)
T ss_pred --ccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHH
Confidence 0112479999999999986532111 11111111 1223468899999998887643
No 131
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.84 E-value=1.7e-21 Score=159.63 Aligned_cols=149 Identities=20% Similarity=0.354 Sum_probs=104.6
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 94 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 94 (355)
||+++|++|||||||++++..+.+.. +.||++.++.. +++....+++|||||
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~------------------------~~~t~~~~~~~----~~~~~~~~~i~Dt~G 52 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT------------------------TIPTIGFNVET----VTYKNLKFQVWDLGG 52 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC------------------------cCCccCcCeEE----EEECCEEEEEEECCC
Confidence 68999999999999999997744321 23455544332 223457899999999
Q ss_pred cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccccc
Q psy15725 95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDD 174 (355)
Q Consensus 95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (355)
++.+...+..++..+|++++|+|++++.++.....|+..+...
T Consensus 53 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~------------------------------------- 95 (158)
T cd04151 53 QTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEE------------------------------------- 95 (158)
T ss_pred CHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhc-------------------------------------
Confidence 9999999999999999999999999988887665555443211
Q ss_pred ccccCCCccEEEEEeecCCCCccccee---hhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725 175 VRTERGSDVIIMLVGNKTDLSDKRQVS---TEEGERKAKELNVMFIETSAKAGYNVKQVR 231 (355)
Q Consensus 175 ~~~~~~~~~piilv~nK~D~~~~~~v~---~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~ 231 (355)
....++|+++|+||+|+.+..... ...........+.+++++|+.++.++++++
T Consensus 96 ---~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 152 (158)
T cd04151 96 ---EELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGM 152 (158)
T ss_pred ---hhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHH
Confidence 112378999999999986432111 111111112233579999999999887654
No 132
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.84 E-value=5.7e-21 Score=156.78 Aligned_cols=150 Identities=21% Similarity=0.391 Sum_probs=108.6
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 94 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 94 (355)
+|+++|++|||||||+++|.++.+... .||+++++.. +.. .....+.+||+||
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~------------------------~~t~~~~~~~--~~~-~~~~~l~i~D~~G 53 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT------------------------IPTVGFNVEM--LQL-EKHLSLTVWDVGG 53 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc------------------------cCccCcceEE--EEe-CCceEEEEEECCC
Confidence 589999999999999999998654321 3444444322 222 2457899999999
Q ss_pred cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccccc
Q psy15725 95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDD 174 (355)
Q Consensus 95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (355)
++.+...+..+++.+|++++|+|++++.++..+..|+.++...
T Consensus 54 ~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~------------------------------------- 96 (160)
T cd04156 54 QEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKN------------------------------------- 96 (160)
T ss_pred CHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhc-------------------------------------
Confidence 9999999999999999999999999999999888887776432
Q ss_pred ccccCCCccEEEEEeecCCCCccc---ceehh-hhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725 175 VRTERGSDVIIMLVGNKTDLSDKR---QVSTE-EGERKAKELNVMFIETSAKAGYNVKQVR 231 (355)
Q Consensus 175 ~~~~~~~~~piilv~nK~D~~~~~---~v~~~-~~~~~~~~~~~~~~~~sa~~~~~v~~i~ 231 (355)
....++|+++|+||+|+.... .+... ....++...+.+++++|+.++.++++++
T Consensus 97 ---~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 97 ---EHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred ---hhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 112479999999999985421 11111 1122233344578999999999887653
No 133
>KOG0098|consensus
Probab=99.84 E-value=8.7e-21 Score=150.73 Aligned_cols=120 Identities=46% Similarity=0.764 Sum_probs=114.0
Q ss_pred ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCC
Q psy15725 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVS 305 (355)
Q Consensus 226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~ 305 (355)
+...+.++||||+|++.|+++.+++|+++.++++|||++...+|.++..|+..+..+..++..++|++||+||...+.++
T Consensus 51 d~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs 130 (216)
T KOG0098|consen 51 DGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVS 130 (216)
T ss_pred cCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcccccc
Confidence 45688999999999999999999999999999999999999999999999999999877899999999999999999999
Q ss_pred HHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 306 TEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
.++..+++++++..++++||++++||+|.|....+.|.+.
T Consensus 131 ~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta~~Iy~~ 170 (216)
T KOG0098|consen 131 KEEGEAFAREHGLIFMETSAKTAENVEEAFINTAKEIYRK 170 (216)
T ss_pred HHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888754
No 134
>KOG4252|consensus
Probab=99.84 E-value=1.1e-22 Score=159.97 Aligned_cols=157 Identities=37% Similarity=0.593 Sum_probs=143.5
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
..-+|++|+|..+|||||++.|++. +-|...+..|++.++..+.+.+...++++.+|
T Consensus 18 e~aiK~vivGng~VGKssmiqryCk-----------------------gifTkdykktIgvdflerqi~v~~Edvr~mlW 74 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCK-----------------------GIFTKDYKKTIGVDFLERQIKVLIEDVRSMLW 74 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhc-----------------------cccccccccccchhhhhHHHHhhHHHHHHHHH
Confidence 3458999999999999999999998 66677788889999999999999999999999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
|++|+++|..+...+++++.+-++||..+|+.||+.+..|++++.+..
T Consensus 75 dtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~-------------------------------- 122 (246)
T KOG4252|consen 75 DTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKET-------------------------------- 122 (246)
T ss_pred HhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHh--------------------------------
Confidence 999999999999999999999999999999999999999999998642
Q ss_pred ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEE
Q psy15725 171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRL 232 (355)
Q Consensus 171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~ 232 (355)
..+|.++|-||+|+..+..++..+.+.+++..+..++.+|+....|+.+++.
T Consensus 123 ----------~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~ 174 (246)
T KOG4252|consen 123 ----------ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFA 174 (246)
T ss_pred ----------ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHH
Confidence 4899999999999998888999999999999999999999998888776543
No 135
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.83 E-value=1.3e-19 Score=157.46 Aligned_cols=237 Identities=15% Similarity=0.155 Sum_probs=134.1
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 94 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 94 (355)
+|+++|+.|+|||||+++|++..-.......+..++.+ ..+.. .....+.++......+.++..++++|||||
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~------~D~~~-~e~~rg~ti~~~~~~~~~~~~~i~liDTPG 73 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTR------TDTME-LERQRGITIFSAVASFQWEDTKVNLIDTPG 73 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCccc------CCCch-hHhhCCCceeeeeEEEEECCEEEEEEeCCC
Confidence 58999999999999999999854222111112111111 01110 012233444444555556678999999999
Q ss_pred cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccccc
Q psy15725 95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDD 174 (355)
Q Consensus 95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (355)
+.+|...+..+++.+|++++|+|+.+....+ ...+.+.+..
T Consensus 74 ~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~~~~~~-------------------------------------- 114 (237)
T cd04168 74 HMDFIAEVERSLSVLDGAILVISAVEGVQAQ-TRILWRLLRK-------------------------------------- 114 (237)
T ss_pred ccchHHHHHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHHH--------------------------------------
Confidence 9999988889999999999999999865432 3334444432
Q ss_pred ccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccCC
Q psy15725 175 VRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDS 254 (355)
Q Consensus 175 ~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~ 254 (355)
.++|+++++||+|+..... .....+....++.....+.... +...+.
T Consensus 115 ------~~~P~iivvNK~D~~~a~~--~~~~~~i~~~~~~~~~~~~~p~------~~~~~~------------------- 161 (237)
T cd04168 115 ------LNIPTIIFVNKIDRAGADL--EKVYQEIKEKLSSDIVPMQKVG------LAPNIC------------------- 161 (237)
T ss_pred ------cCCCEEEEEECccccCCCH--HHHHHHHHHHHCCCeEEEECCc------Eeeeee-------------------
Confidence 2789999999999865321 2223333344443333322110 000000
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHH
Q psy15725 255 TVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 334 (355)
Q Consensus 255 ~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l 334 (355)
-..+.. ..-++.+-+.-+++.+...++ .++ +.+++.............+|++++||.++.||++|
T Consensus 162 ----~~~~~~-~~l~e~vae~dd~l~e~yl~~---------~~~-~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~l 226 (237)
T cd04168 162 ----ETNEID-DEFWETLAEGDDELLEKYLEG---------GPI-EELELDNELSARIAKRKVFPVYHGSALKGIGIEEL 226 (237)
T ss_pred ----eeeecc-HHHHHHHhcCCHHHHHHHhCC---------CCC-CHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHH
Confidence 000110 001111222222222222111 011 22233333333444455579999999999999999
Q ss_pred HHHHHHHcCCC
Q psy15725 335 FRRVAAALPGM 345 (355)
Q Consensus 335 ~~~l~~~i~~~ 345 (355)
++.|.+++|.+
T Consensus 227 l~~~~~~~p~~ 237 (237)
T cd04168 227 LEGITKLFPTS 237 (237)
T ss_pred HHHHHHhcCCC
Confidence 99999999864
No 136
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.83 E-value=4.7e-20 Score=151.02 Aligned_cols=146 Identities=22% Similarity=0.338 Sum_probs=108.2
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 94 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 94 (355)
||+++|++|||||||++++.+..+. .+.+|+++...... .....+.+||+||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~------------------------~~~~t~~~~~~~~~----~~~~~~~i~D~~G 52 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV------------------------TTIPTIGFNVETVE----YKNVSFTVWDVGG 52 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC------------------------CCCCCcCcceEEEE----ECCEEEEEEECCC
Confidence 6899999999999999999985521 22344444433222 2347899999999
Q ss_pred cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccccc
Q psy15725 95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDD 174 (355)
Q Consensus 95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (355)
++.+...+..++..+|++++|||+++++++.....|+..+...
T Consensus 53 ~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~------------------------------------- 95 (158)
T cd00878 53 QDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNE------------------------------------- 95 (158)
T ss_pred ChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhC-------------------------------------
Confidence 9999999999999999999999999999999988887776542
Q ss_pred ccccCCCccEEEEEeecCCCCcccceehhhhhhhh-----hccCeEEEEeeeeeccccceE
Q psy15725 175 VRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKA-----KELNVMFIETSAKAGYNVKQV 230 (355)
Q Consensus 175 ~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~-----~~~~~~~~~~sa~~~~~v~~i 230 (355)
......|+++++||+|+.... ..++..+.. .....++.++|+.++.+++.+
T Consensus 96 ---~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 151 (158)
T cd00878 96 ---EELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEG 151 (158)
T ss_pred ---cccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHH
Confidence 113479999999999986533 111222221 234568999999998887654
No 137
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.83 E-value=1e-18 Score=154.31 Aligned_cols=265 Identities=16% Similarity=0.127 Sum_probs=142.3
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
.+|+++|++|+|||||+++|++..-.....+++.++.. .......+.. .....+.++......++++...+++||||
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~--~~~t~~D~~~-~e~~rg~si~~~~~~~~~~~~~i~liDTP 79 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKS--RKHATSDWME-IEKQRGISVTSSVMQFEYRDCVINLLDTP 79 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceeccccc--CCCccCCCcH-HHHhCCCCeEEEEEEEeeCCEEEEEEECC
Confidence 47999999999999999999974322222222211000 0000011111 11123444555555667777899999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID 173 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (355)
|+.+|.......++.+|++++|+|+++..... ...+.+....
T Consensus 80 G~~df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~------------------------------------- 121 (267)
T cd04169 80 GHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL------------------------------------- 121 (267)
T ss_pred CchHHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh-------------------------------------
Confidence 99988887778889999999999998753322 2233333221
Q ss_pred cccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccC
Q psy15725 174 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRD 253 (355)
Q Consensus 174 ~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~ 253 (355)
.++|+++++||+|+...... ....++...++.+......+.+.+ .-+.-++|......|... .. .
T Consensus 122 -------~~~P~iivvNK~D~~~a~~~--~~~~~l~~~l~~~~~~~~~Pi~~~--~~~~g~vd~~~~~a~~~~-~~---~ 186 (267)
T cd04169 122 -------RGIPIITFINKLDREGRDPL--ELLDEIEEELGIDCTPLTWPIGMG--KDFKGVYDRRTGEVELYD-RG---A 186 (267)
T ss_pred -------cCCCEEEEEECCccCCCCHH--HHHHHHHHHHCCCceeEEecccCC--CceEEEEEhhhCEEEEec-CC---C
Confidence 37899999999998653211 112233344454444444433322 223334443322222100 00 0
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725 254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333 (355)
Q Consensus 254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~ 333 (355)
.....-..++.. ...+.+.+..+.+.+...++ .|.. .++........+....-+|+++.||.+|.||++
T Consensus 187 ~~~~~~~~~~p~-~~~e~~~e~~~~l~e~~~e~---------~~~~-~~~~~~~~~~~~~~~~~~Pv~~gsa~~~~Gv~~ 255 (267)
T cd04169 187 GGATIAPEETKG-LDDPKLDELGGDLAEQLREE---------LELL-EGAGPEFDQEAFLAGELTPVFFGSALNNFGVQE 255 (267)
T ss_pred CCccceeccCCc-ccHHHHHhcCHHHHHHHhCC---------Cccc-hhhhHHHhHHHHHcCCEEEEEecccccCcCHHH
Confidence 000000011110 11133333333333322111 1211 122223333344555557999999999999999
Q ss_pred HHHHHHHHcCCC
Q psy15725 334 LFRRVAAALPGM 345 (355)
Q Consensus 334 l~~~l~~~i~~~ 345 (355)
|++.|.+++|.+
T Consensus 256 Lld~i~~~~P~p 267 (267)
T cd04169 256 LLDALVDLAPAP 267 (267)
T ss_pred HHHHHHHHCCCC
Confidence 999999999864
No 138
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.82 E-value=2.3e-19 Score=148.39 Aligned_cols=85 Identities=13% Similarity=0.180 Sum_probs=59.5
Q ss_pred cEEEEEEeCCCccc--HHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHH
Q psy15725 255 TVAVVVYDITNANS--FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 332 (355)
Q Consensus 255 ~~vi~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~ 332 (355)
+++++|+|+++..+ ++....|+..+.... .+.|+++|+||.|+.+.+.+.. ...+.+..++++++|||++|.|++
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEGVD 157 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCCHH
Confidence 45667777766543 244445666665432 4789999999999865544332 334444456799999999999999
Q ss_pred HHHHHHHHHc
Q psy15725 333 QLFRRVAAAL 342 (355)
Q Consensus 333 ~l~~~l~~~i 342 (355)
++|++|.+.+
T Consensus 158 ~l~~~l~~~~ 167 (168)
T cd01897 158 EVKNKACELL 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999999876
No 139
>KOG0080|consensus
Probab=99.82 E-value=6.7e-20 Score=141.88 Aligned_cols=121 Identities=39% Similarity=0.652 Sum_probs=113.4
Q ss_pred cccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC-CCceEEEEeeCCCCCCccc
Q psy15725 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDKRQ 303 (355)
Q Consensus 225 ~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~ 303 (355)
.....+.+.||||+|+++|+.+.++||+++.++|+|+|++.+.+|..+..|.+++..+.. +++-.++|+||+|..+++.
T Consensus 55 vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~ 134 (209)
T KOG0080|consen 55 VDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERV 134 (209)
T ss_pred EcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhccc
Confidence 345688999999999999999999999999999999999999999999999999988775 6788999999999988899
Q ss_pred CCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 304 VSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 304 v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
+..++...+++.+++-+++|||++.+||+..|+.|+.+|...
T Consensus 135 V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~FeelveKIi~t 176 (209)
T KOG0080|consen 135 VDREEGLKFARKHRCLFIECSAKTRENVQCCFEELVEKIIET 176 (209)
T ss_pred ccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999998754
No 140
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.82 E-value=2.9e-19 Score=148.11 Aligned_cols=56 Identities=29% Similarity=0.288 Sum_probs=39.5
Q ss_pred CceEEEEeeCCCCCCcccCCHHHHHHHHhh-cCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGYNVKQLFRRVAAAL 342 (355)
Q Consensus 286 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~SA~~~~gv~~l~~~l~~~i 342 (355)
++|+++|+||+|+.....+. .....+... .+++++++||+++.|++++|++|.+++
T Consensus 114 ~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 170 (170)
T cd01898 114 EKPRIVVLNKIDLLDEEELF-ELLKELLKELWGKPVFPISALTGEGLDELLRKLAELL 170 (170)
T ss_pred ccccEEEEEchhcCCchhhH-HHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhhC
Confidence 56777788888875443332 222233333 367899999999999999999998753
No 141
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.82 E-value=5.6e-20 Score=152.91 Aligned_cols=98 Identities=17% Similarity=0.411 Sum_probs=72.7
Q ss_pred CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ 88 (355)
Q Consensus 9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 88 (355)
+..+.++|+++|++|||||||++++.+..+.. +.++.++++. .+..+ ...+.
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~------------------------~~~t~g~~~~--~i~~~--~~~~~ 61 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDISH------------------------ITPTQGFNIK--TVQSD--GFKLN 61 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCcc------------------------cCCCCCcceE--EEEEC--CEEEE
Confidence 44557999999999999999999998853311 2334443332 22223 36789
Q ss_pred EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725 89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134 (355)
Q Consensus 89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 134 (355)
+||+||+..+...+..+++.+|++++|+|+++..++.....|+..+
T Consensus 62 ~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~ 107 (173)
T cd04155 62 VWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVEL 107 (173)
T ss_pred EEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 9999999888888888889999999999999887787666555444
No 142
>KOG0087|consensus
Probab=99.81 E-value=2.4e-19 Score=145.80 Aligned_cols=132 Identities=39% Similarity=0.695 Sum_probs=119.0
Q ss_pred cCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEE
Q psy15725 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIML 291 (355)
Q Consensus 212 ~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 291 (355)
+++.+...+. ......+..+||||+|+++|+.+.+.||+++.++++|||++...+|+.+..|+.+++++...+++++|
T Consensus 47 IGvef~t~t~--~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimL 124 (222)
T KOG0087|consen 47 IGVEFATRTV--NVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIML 124 (222)
T ss_pred eeEEEEeece--eecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 3444444332 24456788999999999999999999999999999999999999999999999999999989999999
Q ss_pred EeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 292 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 292 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
|+||+||...+.+..+++..+++..+..++++||..+.||+++|+.++..|.+.
T Consensus 125 vGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~ 178 (222)
T KOG0087|consen 125 VGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLTEIYKI 178 (222)
T ss_pred eecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHHHHHHHH
Confidence 999999988899999999999999999999999999999999999999888754
No 143
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.81 E-value=1.2e-18 Score=141.96 Aligned_cols=85 Identities=28% Similarity=0.558 Sum_probs=64.2
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~ 92 (355)
++||+++|++|+|||||++++....+ ...+.++++.++....+..++....+.+||+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 57 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKF-----------------------ITEYKPGTTRNYVTTVIEEDGKTYKFNLLDT 57 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCC-----------------------cCcCCCCceeeeeEEEEEECCEEEEEEEEEC
Confidence 47999999999999999999998543 3333455566666666666666678999999
Q ss_pred CCcccccccccccccCccEEEEEEECCC
Q psy15725 93 AGQERFRSLIPSYIRDSTVAVVVYDITN 120 (355)
Q Consensus 93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 120 (355)
||+..+...+....+.+++++.++|+..
T Consensus 58 ~G~~~~~~~~~~~~~~~~~~i~~~d~~~ 85 (161)
T TIGR00231 58 AGQEDYRAIRRLYYRAVESSLRVFDIVI 85 (161)
T ss_pred CCcccchHHHHHHHhhhhEEEEEEEEee
Confidence 9988887777766777777777766543
No 144
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.81 E-value=2.4e-19 Score=139.59 Aligned_cols=100 Identities=29% Similarity=0.505 Sum_probs=72.5
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 94 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 94 (355)
||+|+|++|||||||+++|.+..+... ....++.+..+.............+.+||++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 59 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDN---------------------SVPEETSEITIGVDVIVVDGDRQSLQFWDFGG 59 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-----------------------------SSTTSCEEEEEEEETTEEEEEEEEEESS
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCccc---------------------ccccccCCCcEEEEEEEecCCceEEEEEecCc
Confidence 799999999999999999999665410 01112222233333445555555699999999
Q ss_pred cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
++.+...+...+..+|++++|||++++.+|+.+..++..+.
T Consensus 60 ~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~ 100 (119)
T PF08477_consen 60 QEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLK 100 (119)
T ss_dssp SHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHH
T ss_pred cceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHH
Confidence 99888887778999999999999999999988755544443
No 145
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.80 E-value=6.8e-19 Score=159.86 Aligned_cols=94 Identities=18% Similarity=0.184 Sum_probs=64.9
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcC--CCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725 254 STVAVVVYDITNANSFHQTSKWIDDVRTERG--SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 331 (355)
Q Consensus 254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv 331 (355)
++++++|+|+++..+++.+..|.+++..+.. .++|+++|+||+|+.....+.......+....+++++++||+++.||
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL 316 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 4555666666655555666666666654432 46889999999998654433333333444455679999999999999
Q ss_pred HHHHHHHHHHcCCCCC
Q psy15725 332 KQLFRRVAAALPGMDS 347 (355)
Q Consensus 332 ~~l~~~l~~~i~~~~~ 347 (355)
++++++|.+.+.+.+.
T Consensus 317 ~eL~~~L~~~l~~~~~ 332 (335)
T PRK12299 317 DELLRALWELLEEARR 332 (335)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 9999999999876543
No 146
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.80 E-value=2.9e-19 Score=145.89 Aligned_cols=148 Identities=24% Similarity=0.382 Sum_probs=106.8
Q ss_pred EEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCCc
Q psy15725 16 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 95 (355)
Q Consensus 16 I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~ 95 (355)
|+++|++|||||||++++.+..+... +.||++.++... . .....+.+||+||+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~-----------------------~~~t~~~~~~~~--~--~~~~~~~~~D~~g~ 54 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSED-----------------------TIPTVGFNMRKV--T--KGNVTLKVWDLGGQ 54 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcC-----------------------ccCCCCcceEEE--E--ECCEEEEEEECCCC
Confidence 89999999999999999999554433 445555554432 2 22378999999999
Q ss_pred ccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccccc
Q psy15725 96 ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDV 175 (355)
Q Consensus 96 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (355)
..+...+..+++.+|++++|+|+++..++.....|+..+...
T Consensus 55 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~-------------------------------------- 96 (159)
T cd04159 55 PRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEK-------------------------------------- 96 (159)
T ss_pred HhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcC--------------------------------------
Confidence 999999999999999999999999998998877776665421
Q ss_pred cccCCCccEEEEEeecCCCCcccceehhh---hhhhhhccCeEEEEeeeeeccccceE
Q psy15725 176 RTERGSDVIIMLVGNKTDLSDKRQVSTEE---GERKAKELNVMFIETSAKAGYNVKQV 230 (355)
Q Consensus 176 ~~~~~~~~piilv~nK~D~~~~~~v~~~~---~~~~~~~~~~~~~~~sa~~~~~v~~i 230 (355)
....++|+++|+||+|+.+........ ..........+++++|+.++.+++.+
T Consensus 97 --~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 152 (159)
T cd04159 97 --PSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIV 152 (159)
T ss_pred --hhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHH
Confidence 112478999999999986543211100 01111223467889999988877653
No 147
>KOG0086|consensus
Probab=99.80 E-value=3e-19 Score=137.04 Aligned_cols=126 Identities=43% Similarity=0.681 Sum_probs=117.0
Q ss_pred eeeeccccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCC
Q psy15725 220 SAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS 299 (355)
Q Consensus 220 sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 299 (355)
|-..+.+.+.+.++||||+|++.|++..+.||.++.+.++|+|+++..+|+.+..|+..++..+..++-|++++||.||.
T Consensus 48 SrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~ 127 (214)
T KOG0086|consen 48 SRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLD 127 (214)
T ss_pred ceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcC
Confidence 34445566899999999999999999999999999999999999999999999999999988888999999999999999
Q ss_pred CcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 300 DKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 300 ~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
+.++++..++..+++...+.++++||++|+||+|.|-.+.+.|..+
T Consensus 128 ~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~tIl~k 173 (214)
T KOG0086|consen 128 PEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNK 173 (214)
T ss_pred hhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHHHHHHH
Confidence 9999999999999999888999999999999999999998888754
No 148
>KOG0091|consensus
Probab=99.79 E-value=5.6e-19 Score=137.18 Aligned_cols=117 Identities=44% Similarity=0.744 Sum_probs=107.2
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC-CCce-EEEEeeCCCCCCcccCC
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDVI-IMLVGNKTDLSDKRQVS 305 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p-iilv~nK~Dl~~~~~v~ 305 (355)
..+.+++|||+|++.|+++..+||.++-+++++||+++..+|++++.|.++..-+-. +.++ ..||+.|+||.+.++++
T Consensus 56 ~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt 135 (213)
T KOG0091|consen 56 YRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVT 135 (213)
T ss_pred cEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhcccc
Confidence 468899999999999999999999999999999999999999999999988755543 4444 78999999999999999
Q ss_pred HHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725 306 TEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344 (355)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~ 344 (355)
.+++..++..+|+.++++||++|.||++.|+.|.+.|-.
T Consensus 136 ~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaqeIf~ 174 (213)
T KOG0091|consen 136 AEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQEIFQ 174 (213)
T ss_pred HHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988754
No 149
>KOG0083|consensus
Probab=99.79 E-value=2.3e-19 Score=134.57 Aligned_cols=122 Identities=41% Similarity=0.742 Sum_probs=114.6
Q ss_pred cccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccC
Q psy15725 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV 304 (355)
Q Consensus 225 ~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v 304 (355)
.+...+.+++|||+|++.|++....+|.++|..++++|+.+..+|+.+..|+.++.++..+.+.+.+++||+|+.-++.+
T Consensus 42 ~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v 121 (192)
T KOG0083|consen 42 MDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAV 121 (192)
T ss_pred cCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhcc
Confidence 45568899999999999999999999999999999999999999999999999999998888999999999999878899
Q ss_pred CHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725 305 STEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346 (355)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~ 346 (355)
..++...+++.+++|+.++||++|.||+..|-.|.+.+.+.+
T Consensus 122 ~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k~~ 163 (192)
T KOG0083|consen 122 KRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKKLK 163 (192)
T ss_pred ccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999887553
No 150
>KOG0071|consensus
Probab=99.79 E-value=1.1e-18 Score=132.15 Aligned_cols=90 Identities=21% Similarity=0.486 Sum_probs=77.2
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+.++|+++|-.++||||++.++.-++ +....||+|+++.... ++++.|++||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~------------------------~~~~ipTvGFnvetVt----ykN~kfNvwd 67 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQ------------------------SVTTIPTVGFNVETVT----YKNVKFNVWD 67 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCC------------------------CcccccccceeEEEEE----eeeeEEeeee
Confidence 57999999999999999999998754 2334688888877665 5789999999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHH
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~ 129 (355)
++|++..+.+|..|+.+..++|||+|..+++..+..+.
T Consensus 68 vGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ 105 (180)
T KOG0071|consen 68 VGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARN 105 (180)
T ss_pred ccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHH
Confidence 99999999999999999999999999999766665544
No 151
>PRK04213 GTP-binding protein; Provisional
Probab=99.79 E-value=1.6e-18 Score=147.74 Aligned_cols=59 Identities=22% Similarity=0.253 Sum_probs=43.6
Q ss_pred CCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc---------EEEEecCCCCCCHHHHHHHHHHHcCCCCC
Q psy15725 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV---------MFIETSAKAGYNVKQLFRRVAAALPGMDS 347 (355)
Q Consensus 285 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~---------~~~~~SA~~~~gv~~l~~~l~~~i~~~~~ 347 (355)
.++|+++|+||+|+.+.+ .+....+.+..++ +++++||++| ||++++++|.+.+...+.
T Consensus 129 ~~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~ 196 (201)
T PRK04213 129 LGIPPIVAVNKMDKIKNR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR 196 (201)
T ss_pred cCCCeEEEEECccccCcH---HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence 479999999999985433 2233334444333 5899999999 999999999999876543
No 152
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.78 E-value=9.4e-18 Score=148.38 Aligned_cols=257 Identities=15% Similarity=0.131 Sum_probs=135.1
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 94 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 94 (355)
+|+++|++|+|||||+++|+...........+.+++..+ +....+... +.+.......+.++..++.+|||||
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~-----D~~~~E~~r--giti~~~~~~~~~~~~~i~liDTPG 73 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATM-----DFMEQERER--GITIQSAATTCFWKDHRINIIDTPG 73 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCcccc-----CCCccccCC--CcCeeccEEEEEECCEEEEEEECCC
Confidence 589999999999999999987332111111121111110 111122222 3333333444445567899999999
Q ss_pred cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccccc
Q psy15725 95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDD 174 (355)
Q Consensus 95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (355)
+.+|...+...++.+|++++|+|+.+...-+... ..+.+..
T Consensus 74 ~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~-~~~~~~~-------------------------------------- 114 (270)
T cd01886 74 HVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTET-VWRQADR-------------------------------------- 114 (270)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHH-HHHHHHH--------------------------------------
Confidence 9988888888999999999999998854332222 2222222
Q ss_pred ccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCe----EEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725 175 VRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV----MFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY 250 (355)
Q Consensus 175 ~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~----~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~ 250 (355)
.++|+++++||.|+.+... .....++...++. ..+.+++..+ +.-++|......|.. .
T Consensus 115 ------~~~p~ivviNK~D~~~a~~--~~~~~~l~~~l~~~~~~~~~Pisa~~~------f~g~vd~~~~~a~~~--~-- 176 (270)
T cd01886 115 ------YNVPRIAFVNKMDRTGADF--FRVVEQIREKLGANPVPLQLPIGEEDD------FRGVVDLIEMKALYW--D-- 176 (270)
T ss_pred ------cCCCEEEEEECCCCCCCCH--HHHHHHHHHHhCCCceEEEeccccCCC------ceEEEEccccEEEec--c--
Confidence 2789999999999864321 0111222222221 2333333321 222333332222210 0
Q ss_pred ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCC----CcccCCHHHHHH-----HHhhcCcEEE
Q psy15725 251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS----DKRQVSTEEGER-----KAKELNVMFI 321 (355)
Q Consensus 251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~----~~~~v~~~~~~~-----~~~~~~~~~~ 321 (355)
.....-.-..++.. .-.+...++...+.+.. +.+..+|. +...++.++... .....-+|+|
T Consensus 177 -~~~~~~~~~~~ip~-~~~~~~~~~r~~l~e~v--------ae~dd~L~e~yl~~~~~~~~el~~~l~~~~~~~~~~PV~ 246 (270)
T cd01886 177 -GELGEKIEETEIPE-DLLEEAEEAREELIETL--------AEFDDELMEKYLEGEEITEEEIKAAIRKGTIANKIVPVL 246 (270)
T ss_pred -cCCCceeEEecCCH-HHHHHHHHHHHHHHHHH--------hcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCcEEEEE
Confidence 00001011122211 11222334444443321 11111121 123344444322 3334447999
Q ss_pred EecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 322 ETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 322 ~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
++||.++.||+++++.|.+++|.+
T Consensus 247 ~gSa~~~~Gi~~lld~i~~~~p~p 270 (270)
T cd01886 247 CGSAFKNKGVQPLLDAVVDYLPSP 270 (270)
T ss_pred eCcCCCCcCHHHHHHHHHHhcCCC
Confidence 999999999999999999999863
No 153
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.78 E-value=2.2e-18 Score=147.32 Aligned_cols=84 Identities=20% Similarity=0.235 Sum_probs=62.0
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725 254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333 (355)
Q Consensus 254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~ 333 (355)
+|++++|+|.+++.+......|.+.+......++|+++|+||+|+.+..... ......+.+++++||++|.|+++
T Consensus 121 ~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~~gi~~ 195 (204)
T cd01878 121 ADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTGEGLDE 195 (204)
T ss_pred CCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCCCCHHH
Confidence 6677888888877776666666666555443578999999999986443221 23344557899999999999999
Q ss_pred HHHHHHHHc
Q psy15725 334 LFRRVAAAL 342 (355)
Q Consensus 334 l~~~l~~~i 342 (355)
++++|.+.+
T Consensus 196 l~~~L~~~~ 204 (204)
T cd01878 196 LLEAIEELL 204 (204)
T ss_pred HHHHHHhhC
Confidence 999998764
No 154
>KOG0079|consensus
Probab=99.78 E-value=1.2e-18 Score=133.14 Aligned_cols=121 Identities=38% Similarity=0.671 Sum_probs=113.5
Q ss_pred cccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccC
Q psy15725 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV 304 (355)
Q Consensus 225 ~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v 304 (355)
.+.+.+.+.|||++|++.|+.+.+.++++.+++++|+|+++.++|..+.+|++++.+.+ +.+|-++|+||.|..+.+.+
T Consensus 52 i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV 130 (198)
T KOG0079|consen 52 INGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVV 130 (198)
T ss_pred cCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCccceee
Confidence 44678899999999999999999999999999999999999999999999999999887 68999999999999988999
Q ss_pred CHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725 305 STEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346 (355)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~ 346 (355)
..+++..++..-++.+|++||++++|++..|..|.+++....
T Consensus 131 ~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 131 DTEDARAFALQMGIELFETSAKENENVEAMFHCITKQVLQAK 172 (198)
T ss_pred ehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998876543
No 155
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.78 E-value=4.3e-18 Score=165.81 Aligned_cols=108 Identities=15% Similarity=0.181 Sum_probs=73.6
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCc--cccccceeeeeeeeee-----cCcEEE
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT--YQATIGIDFLSKTMYL-----EDRTVR 86 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~t~~~~~~~~~~~~-----~~~~~~ 86 (355)
-||+++|+.++|||||++||+...-.-... .+. ..+.+. ...+.|+++....+.+ ++..+.
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~-----------~~~-~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~ 71 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISER-----------EMR-EQVLDSMDLERERGITIKAQAVRLNYKAKDGETYV 71 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccc-----------ccc-ccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEE
Confidence 489999999999999999999843110000 000 001000 0123344444443333 455689
Q ss_pred EEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHH
Q psy15725 87 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133 (355)
Q Consensus 87 ~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~ 133 (355)
+++|||||+.+|...+..+++.+|++++|||+++..+++....|...
T Consensus 72 l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~ 118 (595)
T TIGR01393 72 LNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLA 118 (595)
T ss_pred EEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHH
Confidence 99999999999999999999999999999999987777766666543
No 156
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.78 E-value=4.4e-18 Score=151.41 Aligned_cols=256 Identities=15% Similarity=0.183 Sum_probs=135.0
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCC-ccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+|+++|++|+|||||+++++.........+.+..++.. ..+.. .....+. .......+.+....+.+||||
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~------~d~~~~e~~r~~t--i~~~~~~~~~~~~~i~liDtP 72 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTV------SDYDPEEIKRKMS--ISTSVAPLEWKGHKINLIDTP 72 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCccc------CCCCHHHHhhccc--ccceeEEEEECCEEEEEEECc
Confidence 58999999999999999998743222111111111100 01111 1111222 222223334455789999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID 173 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (355)
|+.+|...+...++.+|++++|+|+++.........|. .+..
T Consensus 73 G~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~------------------------------------- 114 (268)
T cd04170 73 GYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWE-FADE------------------------------------- 114 (268)
T ss_pred CHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHH-------------------------------------
Confidence 99988888888999999999999999866554443332 2221
Q ss_pred cccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEee--eeeccccceEEEEEEeCCCcccccccccccc
Q psy15725 174 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETS--AKAGYNVKQVRLQLWDTAGQERFRSLIPSYI 251 (355)
Q Consensus 174 ~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~s--a~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~ 251 (355)
.++|+++++||+|..... .......+...++.++..+. ...+.+... +.|......+...
T Consensus 115 -------~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ip~~~~~~~~~----~vd~~~~~~~~~~----- 176 (268)
T cd04170 115 -------AGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQLPIGEGDDFKG----VVDLLTEKAYIYS----- 176 (268)
T ss_pred -------cCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEEecccCCCceeE----EEEcccCEEEEcc-----
Confidence 268999999999986532 11223333344454444443 333333322 2332222111100
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCC----CcccCCHHH-----HHHHHhhcCcEEEE
Q psy15725 252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS----DKRQVSTEE-----GERKAKELNVMFIE 322 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~----~~~~v~~~~-----~~~~~~~~~~~~~~ 322 (355)
.... .-..++.. .-.....++...+.+... .+.-++. +...+..++ ..........|+++
T Consensus 177 -~~~~-~~~~~~p~-~~~~~~~~~~~~l~e~~a--------~~dd~l~e~yl~~~~~~~~~l~~~l~~~~~~~~~~pv~~ 245 (268)
T cd04170 177 -PGAP-SEEIEIPE-ELKEEVAEAREELLEAVA--------ETDDELMEKYLEGGELTEEELHAGLRRALRAGLLVPVLC 245 (268)
T ss_pred -CCCc-ceeccCCH-HHHHHHHHHHHHHHHHHh--------hCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCEEEEEE
Confidence 0000 00011111 111122223333322110 0000111 112333333 33344444479999
Q ss_pred ecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 323 TSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 323 ~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
+||+++.|++++++.+.+++|.+
T Consensus 246 gSa~~~~G~~~ll~~~~~~~p~p 268 (268)
T cd04170 246 GSALTNIGVRELLDALVHLLPSP 268 (268)
T ss_pred eeCCCCcCHHHHHHHHHHhCCCC
Confidence 99999999999999999999863
No 157
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.78 E-value=3.4e-18 Score=147.77 Aligned_cols=123 Identities=45% Similarity=0.711 Sum_probs=99.8
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
..+||+++|++|||||||+++|....+...+. +|++..+...........+.+.+||
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~-----------------------~t~~~~~~~~~~~~~~~~~~~~~~D 60 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYP-----------------------PTIGNLDPAKTIEPYRRNIKLQLWD 60 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCC-----------------------CceeeeeEEEEEEeCCCEEEEEeec
Confidence 34899999999999999999999966655544 4445555555555555578899999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchh-hhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSF-HQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
|+|+++|+.++..++.+++++++|||..+..++ +....|..++....
T Consensus 61 t~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~-------------------------------- 108 (219)
T COG1100 61 TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELA-------------------------------- 108 (219)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhC--------------------------------
Confidence 999999999999999999999999999995555 55788998887542
Q ss_pred ccccccccCCCccEEEEEeecCCCCccc
Q psy15725 171 WIDDVRTERGSDVIIMLVGNKTDLSDKR 198 (355)
Q Consensus 171 ~~~~~~~~~~~~~piilv~nK~D~~~~~ 198 (355)
....|+++|+||+|+....
T Consensus 109 ---------~~~~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 109 ---------PDDVPILLVGNKIDLFDEQ 127 (219)
T ss_pred ---------CCCceEEEEecccccccch
Confidence 1379999999999997653
No 158
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.77 E-value=1.6e-18 Score=146.94 Aligned_cols=158 Identities=18% Similarity=0.256 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCChhHHHHHhhh--cCCCCCce--eeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMY--DSFDNTYQ--ATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
.+|+++|++|||||||+++|++ +.+...+. +++ .. .....++.+.++......++++...+.+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~------------~~-~~~~e~~~g~t~~~~~~~~~~~~~~~~l 69 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERV------------MD-SNDLERERGITILAKNTAVTYKDTKINI 69 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccc------------cc-cchhHHhcccccccceeEEEECCEEEEE
Confidence 3799999999999999999997 33333210 000 00 0011234555555565666667789999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS 169 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (355)
|||||+++|...+..+++.+|++++|||+++.. +.....|+..+..
T Consensus 70 ~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~--------------------------------- 115 (194)
T cd01891 70 VDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE--------------------------------- 115 (194)
T ss_pred EECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---------------------------------
Confidence 999999999999999999999999999998742 2333333333321
Q ss_pred cccccccccCCCccEEEEEeecCCCCcccce-ehhhhhhhh-------hccCeEEEEeeeeeccccce
Q psy15725 170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQV-STEEGERKA-------KELNVMFIETSAKAGYNVKQ 229 (355)
Q Consensus 170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v-~~~~~~~~~-------~~~~~~~~~~sa~~~~~v~~ 229 (355)
.++|+++|+||+|+...+.. ...+...+. ...+.+++.+|+.++.+..+
T Consensus 116 -----------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 116 -----------LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLN 172 (194)
T ss_pred -----------cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhccccccc
Confidence 26899999999998643321 112222222 23467889999988877644
No 159
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.77 E-value=2.2e-18 Score=141.70 Aligned_cols=149 Identities=19% Similarity=0.154 Sum_probs=94.1
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+.|+++|++|||||||+++|++... +.+.....+++..+.......+.. ...+.+||||
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~--------------------~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~Dtp 59 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIET--------------------DRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVP 59 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCccc--------------------ccchhhhccCceEEeeeEEEEecC-CcEEEEEECC
Confidence 4699999999999999999986321 111111222222222222333331 3579999999
Q ss_pred CcccccccccccccCccEEEEEEECCCc---chhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNA---NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
|+++|......+++.+|++++|+|+++. ++++.+. .++..
T Consensus 60 G~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~----~~~~~--------------------------------- 102 (164)
T cd04171 60 GHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLE----ILELL--------------------------------- 102 (164)
T ss_pred ChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHH----HHHHh---------------------------------
Confidence 9999887777788899999999999873 2332221 11110
Q ss_pred ccccccccCCCccEEEEEeecCCCCcccc--eehhhhhhhhhc---cCeEEEEeeeeeccccceE
Q psy15725 171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQ--VSTEEGERKAKE---LNVMFIETSAKAGYNVKQV 230 (355)
Q Consensus 171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~--v~~~~~~~~~~~---~~~~~~~~sa~~~~~v~~i 230 (355)
...|+++++||+|+.+... ....+..+.... .+.+++++|+..+.+++.+
T Consensus 103 ----------~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 157 (164)
T cd04171 103 ----------GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEEL 157 (164)
T ss_pred ----------CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHH
Confidence 1248999999999865421 111222222222 3578999999998887653
No 160
>PRK15494 era GTPase Era; Provisional
Probab=99.77 E-value=1e-17 Score=153.27 Aligned_cols=85 Identities=16% Similarity=0.292 Sum_probs=53.9
Q ss_pred CCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC--cEEEEecCCCCC
Q psy15725 253 DSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN--VMFIETSAKAGY 329 (355)
Q Consensus 253 ~~~~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~SA~~~~ 329 (355)
++|++++|+|.++. +.... .|+..+.. .+.|.++|+||+|+.+. ............+ .+++++||++|.
T Consensus 131 ~aDvil~VvD~~~s--~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAktg~ 202 (339)
T PRK15494 131 SADLVLLIIDSLKS--FDDITHNILDKLRS---LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISALSGK 202 (339)
T ss_pred hCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEeccCcc
Confidence 35666666665432 22322 23344433 34566788888887532 1223333333333 589999999999
Q ss_pred CHHHHHHHHHHHcCCC
Q psy15725 330 NVKQLFRRVAAALPGM 345 (355)
Q Consensus 330 gv~~l~~~l~~~i~~~ 345 (355)
|++++|++|.+.++..
T Consensus 203 gv~eL~~~L~~~l~~~ 218 (339)
T PRK15494 203 NIDGLLEYITSKAKIS 218 (339)
T ss_pred CHHHHHHHHHHhCCCC
Confidence 9999999999998864
No 161
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.77 E-value=8.8e-18 Score=137.32 Aligned_cols=83 Identities=20% Similarity=0.200 Sum_probs=53.7
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725 254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333 (355)
Q Consensus 254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~ 333 (355)
++++++++|.++.... ..+...+.. .++|+++++||+|+.+...+... ...+.+..+++++++||.+|.|+++
T Consensus 75 ~d~vi~v~d~~~~~~~---~~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~ 147 (158)
T cd01879 75 PDLIVNVVDATNLERN---LYLTLQLLE---LGLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDE 147 (158)
T ss_pred CcEEEEEeeCCcchhH---HHHHHHHHH---cCCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHH
Confidence 4555555555543221 122223322 36788888888887654444332 3355556678999999999999999
Q ss_pred HHHHHHHHcC
Q psy15725 334 LFRRVAAALP 343 (355)
Q Consensus 334 l~~~l~~~i~ 343 (355)
++++|.+...
T Consensus 148 l~~~l~~~~~ 157 (158)
T cd01879 148 LKDAIAELAE 157 (158)
T ss_pred HHHHHHHHhc
Confidence 9999988743
No 162
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.77 E-value=5.2e-19 Score=142.17 Aligned_cols=129 Identities=19% Similarity=0.273 Sum_probs=90.1
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 94 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 94 (355)
||+++|++|||||||+++|.+..+ .+.+|++.++. -.+|||||
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~-------------------------~~~~t~~~~~~------------~~~iDt~G 44 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI-------------------------LYKKTQAVEYN------------DGAIDTPG 44 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc-------------------------ccccceeEEEc------------CeeecCch
Confidence 899999999999999999987432 11223332221 15899999
Q ss_pred cc-----cccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725 95 QE-----RFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS 169 (355)
Q Consensus 95 ~~-----~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (355)
+. .|..+.. .++++|++++|||++++.++.. ..|....
T Consensus 45 ~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~~----------------------------------- 87 (142)
T TIGR02528 45 EYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASIF----------------------------------- 87 (142)
T ss_pred hhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHhc-----------------------------------
Confidence 72 3444433 4789999999999999988865 2343221
Q ss_pred cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCe-EEEEeeeeeccccceE
Q psy15725 170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQV 230 (355)
Q Consensus 170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~-~~~~~sa~~~~~v~~i 230 (355)
..|+++|+||+|+.+ +....++..++++..+. +++++|+.++.+++.+
T Consensus 88 ------------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 136 (142)
T TIGR02528 88 ------------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEAL 136 (142)
T ss_pred ------------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHH
Confidence 239999999999864 22334444555555555 7899999999887754
No 163
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.76 E-value=1.5e-17 Score=137.49 Aligned_cols=85 Identities=16% Similarity=0.195 Sum_probs=60.0
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec-CcEEEEEEEecC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTA 93 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~ 93 (355)
.|+++|++|||||||+++|....+...+.+ +...+........+ +....+.+||||
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~-----------------------~~t~~~~~~~~~~~~~~~~~~~iiDtp 58 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAG-----------------------GITQHIGAFEVPAEVLKIPGITFIDTP 58 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCC-----------------------CeEEeeccEEEecccCCcceEEEEeCC
Confidence 489999999999999999998654332111 11111111122222 134678999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcc
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNAN 122 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 122 (355)
|+..|...+...+..+|++++|+|+++..
T Consensus 59 G~~~~~~~~~~~~~~~d~il~v~d~~~~~ 87 (168)
T cd01887 59 GHEAFTNMRARGASLTDIAILVVAADDGV 87 (168)
T ss_pred CcHHHHHHHHHHHhhcCEEEEEEECCCCc
Confidence 99888888888888999999999998743
No 164
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.76 E-value=9.2e-18 Score=149.41 Aligned_cols=89 Identities=18% Similarity=0.077 Sum_probs=62.2
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCCCC
Q psy15725 252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYN 330 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~~g 330 (355)
..+|++++|+|+++..+.+ ..+...+.. .+.|+++|+||+|+...... ......+....++ +++++||++|.|
T Consensus 78 ~~aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~g 151 (270)
T TIGR00436 78 GGVDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPISALTGDN 151 (270)
T ss_pred hhCCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEecCCCCC
Confidence 4578888888887765543 233333433 47899999999998643322 1222333333344 899999999999
Q ss_pred HHHHHHHHHHHcCCCC
Q psy15725 331 VKQLFRRVAAALPGMD 346 (355)
Q Consensus 331 v~~l~~~l~~~i~~~~ 346 (355)
+++++++|.+.++...
T Consensus 152 i~~L~~~l~~~l~~~~ 167 (270)
T TIGR00436 152 TSFLAAFIEVHLPEGP 167 (270)
T ss_pred HHHHHHHHHHhCCCCC
Confidence 9999999999998653
No 165
>KOG0095|consensus
Probab=99.75 E-value=2.8e-18 Score=131.25 Aligned_cols=123 Identities=40% Similarity=0.676 Sum_probs=113.7
Q ss_pred eccccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcc
Q psy15725 223 AGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR 302 (355)
Q Consensus 223 ~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 302 (355)
...+.+.+.++||||+|+++|+++..+||+.++++|+++|++=..+|+-+++|+.++.+++..++--|+|+||.|+.+.+
T Consensus 49 vev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drr 128 (213)
T KOG0095|consen 49 VEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRR 128 (213)
T ss_pred EEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhh
Confidence 34567899999999999999999999999999999999999999999999999999999988888899999999999889
Q ss_pred cCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 303 QVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 303 ~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
++..+.+.++.+.....++++||++..||+.+|..++-.+...
T Consensus 129 evp~qigeefs~~qdmyfletsakea~nve~lf~~~a~rli~~ 171 (213)
T KOG0095|consen 129 EVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLACRLISE 171 (213)
T ss_pred hhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHHHHH
Confidence 9999999999988888999999999999999999988766543
No 166
>KOG0075|consensus
Probab=99.75 E-value=2.1e-18 Score=131.64 Aligned_cols=150 Identities=23% Similarity=0.405 Sum_probs=110.1
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
.++.+.++|-.++|||||+|.+..+.|.+... ||+|++.. .++...+.+.+||
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmi-----------------------ptvGfnmr----k~tkgnvtiklwD 71 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMI-----------------------PTVGFNMR----KVTKGNVTIKLWD 71 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhc-----------------------ccccceeE----EeccCceEEEEEe
Confidence 35789999999999999999998866655544 44565433 3446778999999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW 171 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (355)
.||+..|+..|..|+++++++++|+|+++++.+..-+..+..+.
T Consensus 72 ~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL------------------------------------ 115 (186)
T KOG0075|consen 72 LGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLL------------------------------------ 115 (186)
T ss_pred cCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHh------------------------------------
Confidence 99999999999999999999999999999988877666555553
Q ss_pred cccccccCCCccEEEEEeecCCCCcccc---eehhhhhhhhhccCeEEEEeeeeeccccc
Q psy15725 172 IDDVRTERGSDVIIMLVGNKTDLSDKRQ---VSTEEGERKAKELNVMFIETSAKAGYNVK 228 (355)
Q Consensus 172 ~~~~~~~~~~~~piilv~nK~D~~~~~~---v~~~~~~~~~~~~~~~~~~~sa~~~~~v~ 228 (355)
......++|+++.|||.|++..-. +.......-.....+.++.+|.+...|++
T Consensus 116 ----~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid 171 (186)
T KOG0075|consen 116 ----DKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNID 171 (186)
T ss_pred ----cchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHH
Confidence 234567999999999999875421 11111112222334567777777666655
No 167
>KOG1673|consensus
Probab=99.75 E-value=2.5e-18 Score=132.43 Aligned_cols=159 Identities=25% Similarity=0.538 Sum_probs=131.3
Q ss_pred CCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEE
Q psy15725 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRL 87 (355)
Q Consensus 8 ~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 87 (355)
...+-.+||.++|++..|||||+-+.+++. ++..+..+.|.++..+.+.+.+-.+.+
T Consensus 15 ~~n~Vslkv~llGD~qiGKTs~mvkYV~~~-----------------------~de~~~q~~GvN~mdkt~~i~~t~Isf 71 (205)
T KOG1673|consen 15 VSNLVSLKVGLLGDAQIGKTSLMVKYVQNE-----------------------YDEEYTQTLGVNFMDKTVSIRGTDISF 71 (205)
T ss_pred cccceEEEEEeecccccCceeeehhhhcch-----------------------hHHHHHHHhCccceeeEEEecceEEEE
Confidence 356778999999999999999999999844 445567788999999999999999999
Q ss_pred EEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcccc
Q psy15725 88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ 167 (355)
Q Consensus 88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (355)
.+||++|++++....+....++-+++|+||++.+.++..+..|+++.+...
T Consensus 72 SIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~N----------------------------- 122 (205)
T KOG1673|consen 72 SIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLN----------------------------- 122 (205)
T ss_pred EEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccC-----------------------------
Confidence 999999999999999999999999999999999999999999999986532
Q ss_pred CccccccccccCCCccEEEEEeecCCCC----cc-cceehhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725 168 TSKWIDDVRTERGSDVIIMLVGNKTDLS----DK-RQVSTEEGERKAKELNVMFIETSAKAGYNVKQVR 231 (355)
Q Consensus 168 ~~~~~~~~~~~~~~~~piilv~nK~D~~----~~-~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~ 231 (355)
..-+| ++||+|+|+- .+ ...-..+...+++-.+.+.+.+|+....|+++++
T Consensus 123 ------------ktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIF 178 (205)
T KOG1673|consen 123 ------------KTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIF 178 (205)
T ss_pred ------------Cccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHH
Confidence 22455 5789999962 21 1122245567778888999999999888887653
No 168
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.75 E-value=6.2e-17 Score=155.37 Aligned_cols=269 Identities=16% Similarity=0.145 Sum_probs=142.7
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
....+|+++|+.|+|||||+++|+...-.....+++.+++.- ......+.. .....++++......++++...+++|
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~--~~~~~D~~~-~E~~rgiSi~~~~~~~~~~~~~inli 84 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSG--RHATSDWME-MEKQRGISVTSSVMQFPYRDCLINLL 84 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccC--ccccCCCcH-HHHhhCCceeeeeEEEEECCEEEEEE
Confidence 456799999999999999999998633222222333211100 000011111 11233455555555666677899999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
||||+.+|.......++.+|++|+|+|+++..... ...+++....
T Consensus 85 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~---------------------------------- 129 (526)
T PRK00741 85 DTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCRL---------------------------------- 129 (526)
T ss_pred ECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHHh----------------------------------
Confidence 99999999888888899999999999998853222 2333333322
Q ss_pred ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725 171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY 250 (355)
Q Consensus 171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~ 250 (355)
.++|+++++||+|+..... .....++...++.+......+.+.+. -+.-++|......+......
T Consensus 130 ----------~~iPiiv~iNK~D~~~a~~--~~~l~~i~~~l~~~~~p~~~Pig~~~--~f~Gvvdl~~~~~~~~~~~~- 194 (526)
T PRK00741 130 ----------RDTPIFTFINKLDRDGREP--LELLDEIEEVLGIACAPITWPIGMGK--RFKGVYDLYNDEVELYQPGE- 194 (526)
T ss_pred ----------cCCCEEEEEECCcccccCH--HHHHHHHHHHhCCCCeeEEeccccCC--ceeEEEEeecceeeecccCC-
Confidence 3799999999999865331 11223333444544444443333321 12223332221111000000
Q ss_pred ccCCcEEEEEEeCCCcccHHH-HH-HHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCC
Q psy15725 251 IRDSTVAVVVYDITNANSFHQ-TS-KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 328 (355)
Q Consensus 251 ~~~~~~vi~v~d~~~~~s~~~-~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~ 328 (355)
-......-.+.+.++.. ++. +. ....++.+.. ++.. ..........+....-+|++++||++|
T Consensus 195 ~~~~~~~e~~~~~dd~l-le~~l~~~~~~~l~~~l-------------el~~-~~~~~~~~~~~~~~~~~PV~~GSA~~n 259 (526)
T PRK00741 195 GHTIQEVEIIKGLDNPE-LDELLGEDLAEQLREEL-------------ELVQ-GASNEFDLEAFLAGELTPVFFGSALNN 259 (526)
T ss_pred CCcceeeeeccCCCHHH-HHHHhcccHHHHHHHHH-------------Hhhh-hcccchhHHHHhcCCeEEEEEeecccC
Confidence 00000111112222111 110 00 0011111110 0100 011111223444444579999999999
Q ss_pred CCHHHHHHHHHHHcCCCCC
Q psy15725 329 YNVKQLFRRVAAALPGMDS 347 (355)
Q Consensus 329 ~gv~~l~~~l~~~i~~~~~ 347 (355)
.||+++++.|.+++|.+..
T Consensus 260 ~Gv~~LLd~i~~~~P~P~~ 278 (526)
T PRK00741 260 FGVQEFLDAFVEWAPAPQP 278 (526)
T ss_pred cCHHHHHHHHHHHCCCCCc
Confidence 9999999999999998854
No 169
>KOG3883|consensus
Probab=99.75 E-value=2.6e-17 Score=126.55 Aligned_cols=153 Identities=24% Similarity=0.354 Sum_probs=119.3
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee-cCcEEEEEEE
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTVRLQLW 90 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~ 90 (355)
+-+||+|+|..+||||+++.+++.++... -....||+. +.+...+.- ++-.-.+.++
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~---------------------~~e~~pTiE-DiY~~svet~rgarE~l~ly 65 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVP---------------------GTELHPTIE-DIYVASVETDRGAREQLRLY 65 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCC---------------------CCccccchh-hheeEeeecCCChhheEEEe
Confidence 55899999999999999999999865221 123445555 333333332 3334568999
Q ss_pred ecCCcccc-cccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725 91 DTAGQERF-RSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS 169 (355)
Q Consensus 91 D~~g~~~~-~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (355)
||.|.+.. ..+...++.-+|++++||+..+++||+.+.-+-.+|.+.
T Consensus 66 DTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~-------------------------------- 113 (198)
T KOG3883|consen 66 DTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKH-------------------------------- 113 (198)
T ss_pred ecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhc--------------------------------
Confidence 99998887 557777888899999999999999998876655555433
Q ss_pred cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccc
Q psy15725 170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226 (355)
Q Consensus 170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~ 226 (355)
.+...+||++.+||+|+..++.++.+....++....+...++++....+
T Consensus 114 --------KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~s 162 (198)
T KOG3883|consen 114 --------KDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPS 162 (198)
T ss_pred --------cccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchh
Confidence 4456899999999999999999999999999999999999998876443
No 170
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.75 E-value=4.6e-17 Score=137.11 Aligned_cols=102 Identities=25% Similarity=0.284 Sum_probs=67.3
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 94 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 94 (355)
+|+++|.+|+|||||+|++.+........+++.+ .+. ........+++.... .....+.....+.+|||||
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~liDtpG 71 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEE------TFL-DVLKEERERGITIKS--GVATFEWPDRRVNFIDTPG 71 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceec------ccc-cCCHHHHHcCCCeec--ceEEEeeCCEEEEEEeCCC
Confidence 4899999999999999999998766554443321 000 000011111111121 1222223356899999999
Q ss_pred cccccccccccccCccEEEEEEECCCcchhh
Q psy15725 95 QERFRSLIPSYIRDSTVAVVVYDITNANSFH 125 (355)
Q Consensus 95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~ 125 (355)
+..+...+..+++.+|++++|+|..++.+..
T Consensus 72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~ 102 (189)
T cd00881 72 HEDFSSEVIRGLSVSDGAILVVDANEGVQPQ 102 (189)
T ss_pred cHHHHHHHHHHHHhcCEEEEEEECCCCCcHH
Confidence 9988888888899999999999998865443
No 171
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.74 E-value=3.4e-17 Score=132.07 Aligned_cols=90 Identities=47% Similarity=0.842 Sum_probs=70.4
Q ss_pred EEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCCccc
Q psy15725 18 FLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 97 (355)
Q Consensus 18 vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 97 (355)
++|++|+|||||++++.+.... .....++. .++.............+.+||+||...
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~----------------------~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~ 57 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV----------------------PEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQER 57 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC----------------------Ccccccch-hheeeEEEEECCEEEEEEEEecCChHH
Confidence 5899999999999999985431 12223333 455555555556678999999999988
Q ss_pred ccccccccccCccEEEEEEECCCcchhhhHHHH
Q psy15725 98 FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130 (355)
Q Consensus 98 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~ 130 (355)
+.......++.+|++++|+|++++.++.....|
T Consensus 58 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~ 90 (157)
T cd00882 58 FRSLRRLYYRGADGIILVYDVTDRESFENVKEW 90 (157)
T ss_pred HHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHH
Confidence 888778888999999999999998888777665
No 172
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.74 E-value=3.3e-17 Score=148.78 Aligned_cols=57 Identities=26% Similarity=0.241 Sum_probs=42.8
Q ss_pred CCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342 (355)
Q Consensus 285 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i 342 (355)
.++|+++|+||+|+..... .......+.+..+++++++||+++.||++++++|.+.+
T Consensus 272 ~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 272 AEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred ccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 4678888888888764432 22333445555567899999999999999999999865
No 173
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.74 E-value=1.1e-17 Score=136.78 Aligned_cols=84 Identities=17% Similarity=0.120 Sum_probs=56.3
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc--EEEEecCCCCCCH
Q psy15725 254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV--MFIETSAKAGYNV 331 (355)
Q Consensus 254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~--~~~~~SA~~~~gv 331 (355)
+|++++|+|.++..++.. .|+..+. .++|+++++||+|+... ..+....+++..++ |++++||++|.||
T Consensus 65 ad~il~v~d~~~~~s~~~--~~~~~~~----~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi 135 (158)
T PRK15467 65 VDMLIYVHGANDPESRLP--AGLLDIG----VSKRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDPQSV 135 (158)
T ss_pred CCEEEEEEeCCCcccccC--HHHHhcc----CCCCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCccCH
Confidence 555566666555443311 2322221 36789999999998532 23444555556664 9999999999999
Q ss_pred HHHHHHHHHHcCCCC
Q psy15725 332 KQLFRRVAAALPGMD 346 (355)
Q Consensus 332 ~~l~~~l~~~i~~~~ 346 (355)
+++|++|.+.+....
T Consensus 136 ~~l~~~l~~~~~~~~ 150 (158)
T PRK15467 136 QQLVDYLASLTKQEE 150 (158)
T ss_pred HHHHHHHHHhchhhh
Confidence 999999999887554
No 174
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.74 E-value=1.7e-16 Score=152.48 Aligned_cols=110 Identities=16% Similarity=0.231 Sum_probs=74.7
Q ss_pred CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ 88 (355)
Q Consensus 9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 88 (355)
+..+..+|+|+|++++|||||+++|+...-.....+++.+.... +.....+. ......++++......++++...++
T Consensus 7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~--~~t~~D~~-~~E~~rgisi~~~~~~~~~~~~~in 83 (527)
T TIGR00503 7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQ--RHAKSDWM-EMEKQRGISITTSVMQFPYRDCLVN 83 (527)
T ss_pred hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceecccccc--ccccCCCC-HHHHhcCCcEEEEEEEEeeCCeEEE
Confidence 34567899999999999999999997633222222333211110 00011111 1122345566666666777789999
Q ss_pred EEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725 89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121 (355)
Q Consensus 89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 121 (355)
+|||||+.+|.......++.+|++++|+|+.+.
T Consensus 84 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g 116 (527)
T TIGR00503 84 LLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKG 116 (527)
T ss_pred EEECCChhhHHHHHHHHHHhCCEEEEEEECCCC
Confidence 999999999888777889999999999999874
No 175
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.74 E-value=4.6e-16 Score=135.07 Aligned_cols=52 Identities=29% Similarity=0.246 Sum_probs=40.2
Q ss_pred CCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343 (355)
Q Consensus 285 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~ 343 (355)
.-+|+++|+||+|+.+. .+...++.. .+++++||++|.|++++|+.|.+.+.
T Consensus 175 ~y~p~iiV~NK~Dl~~~-----~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 175 VYIPCLYVYNKIDLISI-----EELDLLARQ--PNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred eEeeEEEEEECccCCCH-----HHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 46899999999998533 233334432 46899999999999999999998764
No 176
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.74 E-value=2.9e-17 Score=138.92 Aligned_cols=30 Identities=23% Similarity=0.099 Sum_probs=27.1
Q ss_pred cCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 316 LNVMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 316 ~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
.+++++++||++|.|+++++++|..+|+.+
T Consensus 159 ~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 159 KNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred CCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 357899999999999999999999999864
No 177
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.73 E-value=1.9e-16 Score=145.09 Aligned_cols=85 Identities=26% Similarity=0.269 Sum_probs=60.6
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725 252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 331 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv 331 (355)
.++|++++|+|.+++.+.+.+..|...+......++|+++|+||+|+.....+ .... ....+++++||++|.|+
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v-----~~~~-~~~~~~i~iSAktg~GI 340 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRI-----ERLE-EGYPEAVFVSAKTGEGL 340 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhH-----HHHH-hCCCCEEEEEccCCCCH
Confidence 44788888888888777666655555554433357899999999998643221 1111 12346899999999999
Q ss_pred HHHHHHHHHHc
Q psy15725 332 KQLFRRVAAAL 342 (355)
Q Consensus 332 ~~l~~~l~~~i 342 (355)
++++++|.+.+
T Consensus 341 ~eL~~~I~~~~ 351 (351)
T TIGR03156 341 DLLLEAIAERL 351 (351)
T ss_pred HHHHHHHHhhC
Confidence 99999998753
No 178
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.73 E-value=1.5e-17 Score=160.88 Aligned_cols=95 Identities=19% Similarity=0.219 Sum_probs=65.4
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeee------------eec
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTM------------YLE 81 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~------------~~~ 81 (355)
--|+++|++++|||||+++|.+..+....++. .+++++..+..... .++
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~gg-------------------iTq~iG~~~v~~~~~~~~~~~~~~~~~v~ 65 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGG-------------------ITQHIGATEIPMDVIEGICGDLLKKFKIR 65 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCc-------------------eecccCeeEeeeccccccccccccccccc
Confidence 35999999999999999999986553332221 22333333322111 111
Q ss_pred CcEEEEEEEecCCcccccccccccccCccEEEEEEECCC---cchhhhH
Q psy15725 82 DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN---ANSFHQT 127 (355)
Q Consensus 82 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~ 127 (355)
.+...+.+|||||++.|..++..+++.+|++++|||+++ +++++.+
T Consensus 66 ~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i 114 (590)
T TIGR00491 66 LKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEAL 114 (590)
T ss_pred cccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH
Confidence 112248899999999999999999999999999999997 4444443
No 179
>KOG0097|consensus
Probab=99.72 E-value=4.5e-17 Score=123.46 Aligned_cols=126 Identities=41% Similarity=0.700 Sum_probs=113.9
Q ss_pred CeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEE
Q psy15725 213 NVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLV 292 (355)
Q Consensus 213 ~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv 292 (355)
+..++++| ...+.+.|||++|++.|+...+++|+++.+.+.|+|++.+.++.++..|+....+.-.++..|+++
T Consensus 49 gtriievs------gqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~li 122 (215)
T KOG0097|consen 49 GTRIIEVS------GQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLI 122 (215)
T ss_pred ceeEEEec------CcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEe
Confidence 44455554 357899999999999999999999999999999999999999999999998887766678899999
Q ss_pred eeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725 293 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344 (355)
Q Consensus 293 ~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~ 344 (355)
+||.|+.+.+.+..++++++++..|..++++||++|.||++.|-.-.++|..
T Consensus 123 gnkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~akkiyq 174 (215)
T KOG0097|consen 123 GNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETAKKIYQ 174 (215)
T ss_pred cchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888887753
No 180
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.72 E-value=1.6e-16 Score=155.10 Aligned_cols=110 Identities=18% Similarity=0.202 Sum_probs=71.5
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee-----cCcEEEE
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-----EDRTVRL 87 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----~~~~~~~ 87 (355)
-.+|+++|+.++|||||+.+|+...-.-... ..-..+ .+....+ .+.|+++......+ +++.+.+
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~-------~~~~~~-lD~~~~E--rerGiTi~~~~v~~~~~~~dg~~~~l 76 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSER-------EMKAQV-LDSMDLE--RERGITIKAQAVRLNYKAKDGETYIL 76 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCccc-------cccccc-ccCchHH--hhcCCcccccEEEEEEEccCCCcEEE
Confidence 3589999999999999999998743110000 000000 0111111 12233333332222 4557899
Q ss_pred EEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHH
Q psy15725 88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132 (355)
Q Consensus 88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~ 132 (355)
++|||||+.+|...+..+++.+|++++|+|+++....+....|..
T Consensus 77 nLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~ 121 (600)
T PRK05433 77 NLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYL 121 (600)
T ss_pred EEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH
Confidence 999999999999989999999999999999998766655555543
No 181
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.72 E-value=4.5e-17 Score=137.26 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=67.2
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+..+|+++|+.++|||||+++|+.............+.+ ++ .+....+....+..+.....+........+.++|
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~----~~-~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iD 76 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKN----AF-LDKHPEERERGITIDLSFISFEKNENNRKITLID 76 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHH----CH-HHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEE
T ss_pred CEEEEEEECCCCCCcEeechhhhhhcccccccccccccc----cc-ccccchhhhcccccccccccccccccccceeecc
Confidence 357999999999999999999998542211100000000 00 0111111112222222222222125567899999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchh
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 124 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~ 124 (355)
|||+..|...+...+..+|++|+|+|+.+....
T Consensus 77 tPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~ 109 (188)
T PF00009_consen 77 TPGHEDFIKEMIRGLRQADIAILVVDANDGIQP 109 (188)
T ss_dssp ESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTH
T ss_pred cccccceeecccceecccccceeeeeccccccc
Confidence 999999988888889999999999999986443
No 182
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.71 E-value=1.6e-16 Score=135.47 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=30.6
Q ss_pred EEEEEEecCCcccccccccccccCccEEEEEEECCC
Q psy15725 85 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120 (355)
Q Consensus 85 ~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 120 (355)
.++.+|||||++.|...+...+..+|++++|+|+++
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~ 118 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANE 118 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCC
Confidence 679999999998887777777778899999988876
No 183
>KOG0096|consensus
Probab=99.71 E-value=5.5e-17 Score=129.51 Aligned_cols=158 Identities=29% Similarity=0.538 Sum_probs=129.5
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+.++++++|+.|.||||+++|.+.+ .+..++.+|+|.......+.-+.+.+++..|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltg-----------------------eFe~~y~at~Gv~~~pl~f~tn~g~irf~~w 64 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTG-----------------------EFEKTYPATLGVEVHPLLFDTNRGQIRFNVW 64 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcc-----------------------cceecccCcceeEEeeeeeecccCcEEEEee
Confidence 57899999999999999999999994 4555566677888777777666677999999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
||.|++.+..++..++-++.+++++||+..+-+..++..|.+.+.+.+
T Consensus 65 dtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-------------------------------- 112 (216)
T KOG0096|consen 65 DTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-------------------------------- 112 (216)
T ss_pred ecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHh--------------------------------
Confidence 999999999999999999999999999999999999999999987653
Q ss_pred ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEE
Q psy15725 171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLW 235 (355)
Q Consensus 171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~ 235 (355)
.++||++.|||.|..... .......+....++.++++|+..+-|.+.-+..+.
T Consensus 113 ----------~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~La 165 (216)
T KOG0096|consen 113 ----------ENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLA 165 (216)
T ss_pred ----------cCCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHHh
Confidence 379999999999976532 11222334455678899999998888887665443
No 184
>PRK13351 elongation factor G; Reviewed
Probab=99.70 E-value=4.4e-16 Score=155.82 Aligned_cols=273 Identities=16% Similarity=0.117 Sum_probs=140.7
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
...||+|+|+.|+|||||+++|+...-.......+..++ +. .+....+ ...+.+.......+.++...+++||
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~-~~----~d~~~~e--~~r~~ti~~~~~~~~~~~~~i~liD 79 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGT-TV----TDWMPQE--QERGITIESAATSCDWDNHRINLID 79 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCc-cc----CCCCHHH--HhcCCCcccceEEEEECCEEEEEEE
Confidence 457999999999999999999987431111111110000 00 0001111 1122222223333445568999999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW 171 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (355)
|||+.+|...+..+++.+|++++|+|+++..+++....|.. +..
T Consensus 80 tPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~-~~~----------------------------------- 123 (687)
T PRK13351 80 TPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQ-ADR----------------------------------- 123 (687)
T ss_pred CCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHh-----------------------------------
Confidence 99999999989999999999999999999877766555532 221
Q ss_pred cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725 172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI 251 (355)
Q Consensus 172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~ 251 (355)
.++|+++++||+|+..... .....++...++.....+..+.+.+ ..+..+.|......+ .|...
T Consensus 124 ---------~~~p~iiviNK~D~~~~~~--~~~~~~i~~~l~~~~~~~~~P~~~~--~~~~g~id~~~~~~~--~~~~~- 187 (687)
T PRK13351 124 ---------YGIPRLIFINKMDRVGADL--FKVLEDIEERFGKRPLPLQLPIGSE--DGFEGVVDLITEPEL--HFSEG- 187 (687)
T ss_pred ---------cCCCEEEEEECCCCCCCCH--HHHHHHHHHHHCCCeEEEEeccccC--CceEEEEECccceEE--ecccC-
Confidence 2789999999999865321 1222233333444333332222222 123334443322211 11110
Q ss_pred cCCcEEEEEEeCCCcccHH-HHHHHHHHHHhhcC--CCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCC
Q psy15725 252 RDSTVAVVVYDITNANSFH-QTSKWIDDVRTERG--SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 328 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~-~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~ 328 (355)
.....+ ...++. .++. .+......+.+... ++.-.--.++...+ +.+.+.......+.....+|++++||++|
T Consensus 188 ~~~~~~-~~~~~~--~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l-~~~~l~~~~~~~~~~~~~~PV~~gSA~~~ 263 (687)
T PRK13351 188 DGGSTV-EEGPIP--EELLEEVEEAREKLIEALAEFDDELLELYLEGEEL-SAEQLRAPLREGTRSGHLVPVLFGSALKN 263 (687)
T ss_pred CCCCce-EEccCC--HHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCC-CHHHHHHHHHHHHHhCCEEEEEecccCcC
Confidence 001111 111111 1121 11122222211110 00000000000111 12222222233333444469999999999
Q ss_pred CCHHHHHHHHHHHcCCCCC
Q psy15725 329 YNVKQLFRRVAAALPGMDS 347 (355)
Q Consensus 329 ~gv~~l~~~l~~~i~~~~~ 347 (355)
.||+.|++.|...+|.+..
T Consensus 264 ~Gv~~LLd~I~~~lPsP~~ 282 (687)
T PRK13351 264 IGIEPLLDAVVDYLPSPLE 282 (687)
T ss_pred ccHHHHHHHHHHHCCChhh
Confidence 9999999999999999853
No 185
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.70 E-value=1.1e-16 Score=133.33 Aligned_cols=58 Identities=26% Similarity=0.263 Sum_probs=44.1
Q ss_pred CCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342 (355)
Q Consensus 285 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i 342 (355)
.++|+++|+||+|+.+................+.+++++||+++.|++++++++...+
T Consensus 119 ~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~~ 176 (176)
T cd01881 119 TAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYELL 176 (176)
T ss_pred hhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhhC
Confidence 3799999999999976554433322333444557899999999999999999998753
No 186
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.70 E-value=1.4e-16 Score=151.03 Aligned_cols=79 Identities=20% Similarity=0.250 Sum_probs=55.8
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725 252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 331 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv 331 (355)
..+|++++|+|++++.+.++...|.. ..++|+++|+||+|+....... ...+.+++++||++|.|+
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI 358 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGI 358 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCH
Confidence 33666777777766665554333322 2578999999999986433221 233468999999999999
Q ss_pred HHHHHHHHHHcCC
Q psy15725 332 KQLFRRVAAALPG 344 (355)
Q Consensus 332 ~~l~~~l~~~i~~ 344 (355)
++++++|.+.+..
T Consensus 359 ~~L~~~L~~~l~~ 371 (449)
T PRK05291 359 DELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998864
No 187
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.70 E-value=5.5e-16 Score=144.35 Aligned_cols=90 Identities=22% Similarity=0.256 Sum_probs=59.6
Q ss_pred CcEEEEEEeCCCc---ccHHHHHHHHHHHHhhcC--CCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCC
Q psy15725 254 STVAVVVYDITNA---NSFHQTSKWIDDVRTERG--SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 328 (355)
Q Consensus 254 ~~~vi~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~ 328 (355)
++++++|+|+++. ..+++...|.+++..+.. .++|+++|+||+|+... .+....+.+..+++++++||+++
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tg 312 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTG 312 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCC
Confidence 3444555555432 334444455555544321 47899999999997322 22334455555578999999999
Q ss_pred CCHHHHHHHHHHHcCCCCC
Q psy15725 329 YNVKQLFRRVAAALPGMDS 347 (355)
Q Consensus 329 ~gv~~l~~~l~~~i~~~~~ 347 (355)
.|+++++++|.+.+...+.
T Consensus 313 eGI~eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 313 QGLDELLYAVAELLEETPE 331 (424)
T ss_pred CCHHHHHHHHHHHHHhCcc
Confidence 9999999999998876543
No 188
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.70 E-value=5.3e-16 Score=150.51 Aligned_cols=87 Identities=21% Similarity=0.222 Sum_probs=63.8
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+..+|+++|+.++|||||+++|.+..+...+.+ ++..+.....+.+++. ..+.+||
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~-----------------------GIT~~ig~~~v~~~~~-~~i~~iD 141 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAG-----------------------GITQHIGAYHVENEDG-KMITFLD 141 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCC-----------------------ceeecceEEEEEECCC-cEEEEEE
Confidence 457899999999999999999998654433221 1111222222333222 2789999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcc
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 122 (355)
|||++.|..++...+..+|++++|||+++..
T Consensus 142 TPGhe~F~~~r~rga~~aDiaILVVda~dgv 172 (587)
T TIGR00487 142 TPGHEAFTSMRARGAKVTDIVVLVVAADDGV 172 (587)
T ss_pred CCCCcchhhHHHhhhccCCEEEEEEECCCCC
Confidence 9999999999998999999999999998743
No 189
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.69 E-value=2.3e-16 Score=128.59 Aligned_cols=52 Identities=23% Similarity=0.225 Sum_probs=38.0
Q ss_pred CceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCCCCHHHHHHHHHHHc
Q psy15725 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAAL 342 (355)
Q Consensus 286 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~~gv~~l~~~l~~~i 342 (355)
++|+++|+||+|+.+.... .......+. +++++||++|.|++++|++|.+.+
T Consensus 105 ~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 105 KKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred CCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhhC
Confidence 5788888888887543322 122233444 789999999999999999998764
No 190
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.69 E-value=3.2e-17 Score=131.49 Aligned_cols=143 Identities=19% Similarity=0.334 Sum_probs=91.9
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
++|+++|.||||||||+|+|++.+.. + +.|+. ...+.....+.+.+ ..+.++|+|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~------v------------~n~pG-----~Tv~~~~g~~~~~~--~~~~lvDlP 55 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQK------V------------GNWPG-----TTVEKKEGIFKLGD--QQVELVDLP 55 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEE------E------------EESTT-----SSSEEEEEEEEETT--EEEEEEE--
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCce------e------------cCCCC-----CCeeeeeEEEEecC--ceEEEEECC
Confidence 58999999999999999999995410 1 12222 12233333333333 689999999
Q ss_pred Cccccc------ccccccc--cCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcc
Q psy15725 94 GQERFR------SLIPSYI--RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165 (355)
Q Consensus 94 g~~~~~------~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (355)
|.-... .....++ ...|++++|+|+++. +.-.++..++...
T Consensus 56 G~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l---~r~l~l~~ql~e~---------------------------- 104 (156)
T PF02421_consen 56 GIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNL---ERNLYLTLQLLEL---------------------------- 104 (156)
T ss_dssp --SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGH---HHHHHHHHHHHHT----------------------------
T ss_pred CcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCH---HHHHHHHHHHHHc----------------------------
Confidence 963322 2233333 579999999999873 2222333444332
Q ss_pred ccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccce
Q psy15725 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 229 (355)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~ 229 (355)
++|++++.||+|....+.+.. ....+.+..+++++.+|+.++.+.++
T Consensus 105 ----------------g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 105 ----------------GIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp ----------------TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred ----------------CCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 899999999999876555443 35677778899999999999888764
No 191
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.68 E-value=6.2e-16 Score=152.16 Aligned_cols=91 Identities=20% Similarity=0.302 Sum_probs=65.6
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+..+|+++|+.++|||||+++|....+.....+.+ +.+++ ........++....+.|||
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~Gi-------------------Tq~i~--~~~v~~~~~~~~~kItfiD 301 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGI-------------------TQKIG--AYEVEFEYKDENQKIVFLD 301 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCcc-------------------ccccc--eEEEEEEecCCceEEEEEE
Confidence 45689999999999999999998855433221111 11111 1222222334457899999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcch
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s 123 (355)
|||++.|..++..++..+|++|+|||+++...
T Consensus 302 TPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~ 333 (742)
T CHL00189 302 TPGHEAFSSMRSRGANVTDIAILIIAADDGVK 333 (742)
T ss_pred CCcHHHHHHHHHHHHHHCCEEEEEEECcCCCC
Confidence 99999999999999999999999999988533
No 192
>KOG0076|consensus
Probab=99.68 E-value=5.3e-17 Score=127.80 Aligned_cols=98 Identities=23% Similarity=0.431 Sum_probs=73.0
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
..+.|+++|..++|||||+.+..... ...|. ..-+....+|+|.+..+..+. ...+.+||
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~-~~~~~---------------~l~~~ki~~tvgLnig~i~v~----~~~l~fwd 75 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDF-SKAYG---------------GLNPSKITPTVGLNIGTIEVC----NAPLSFWD 75 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHH-Hhhhc---------------CCCHHHeecccceeecceeec----cceeEEEE
Confidence 45889999999999999999876532 11110 112345567887766655542 46899999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHH
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~ 129 (355)
.+|++..+.+|..+|..+.++|++||+++++.|+....
T Consensus 76 lgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t 113 (197)
T KOG0076|consen 76 LGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKT 113 (197)
T ss_pred cCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHH
Confidence 99999999999999999999999999988877765443
No 193
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.68 E-value=1.3e-15 Score=143.60 Aligned_cols=63 Identities=17% Similarity=0.152 Sum_probs=47.3
Q ss_pred CCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCCCC
Q psy15725 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDST 348 (355)
Q Consensus 285 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~ 348 (355)
.++|+++|+||+|+.+...+.. .........+++++++||+++.|+++++++|.+.+...+..
T Consensus 283 ~~kP~IVVlNKiDL~da~el~e-~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~~ 345 (500)
T PRK12296 283 AERPRLVVLNKIDVPDARELAE-FVRPELEARGWPVFEVSAASREGLRELSFALAELVEEARAA 345 (500)
T ss_pred cCCCEEEEEECccchhhHHHHH-HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhhcc
Confidence 4789999999999864433211 22222334578999999999999999999999998776543
No 194
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.68 E-value=4.4e-16 Score=146.73 Aligned_cols=141 Identities=23% Similarity=0.252 Sum_probs=97.0
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+.+||+++|++|||||||+|+|++.... ....+ |+...++....+.+++ ..+.+||
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~a---------------------ivs~~-pgtTrd~~~~~i~~~g--~~v~l~D 257 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRA---------------------IVSDI-KGTTRDVVEGDFELNG--ILIKLLD 257 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCc---------------------ccCCC-CCcEEEEEEEEEEECC--EEEEEee
Confidence 3589999999999999999999985321 11111 2223345555555554 4678999
Q ss_pred cCCccccccc--------ccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccC
Q psy15725 92 TAGQERFRSL--------IPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHAN 163 (355)
Q Consensus 92 ~~g~~~~~~~--------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (355)
|||+.++... ...+++.+|++++|||++++.+++.. |+..+..
T Consensus 258 TaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~--------------------------- 308 (442)
T TIGR00450 258 TAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK--------------------------- 308 (442)
T ss_pred CCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---------------------------
Confidence 9998655432 23567899999999999998887765 6655432
Q ss_pred ccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccce
Q psy15725 164 SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 229 (355)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~ 229 (355)
.+.|+++|+||+|+... ....++...+.+++.+|+.+ .+++.
T Consensus 309 -----------------~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~gI~~ 350 (442)
T TIGR00450 309 -----------------SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LKIKA 350 (442)
T ss_pred -----------------CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CCHHH
Confidence 26899999999998543 12334455566788888886 34443
No 195
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.68 E-value=1.1e-15 Score=129.79 Aligned_cols=86 Identities=15% Similarity=0.064 Sum_probs=55.1
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCC--HHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725 254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVS--TEEGERKAKELNVMFIETSAKAGYNV 331 (355)
Q Consensus 254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~~~~~~~~~~~SA~~~~gv 331 (355)
.+++++++|.+++.+.... .....+.. .++|+++++||+|+.+..... .............+++++||+++.|+
T Consensus 107 ~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi 182 (196)
T PRK00454 107 LKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGI 182 (196)
T ss_pred ceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCH
Confidence 3456677777665443221 11222222 578999999999986543211 11122333333578999999999999
Q ss_pred HHHHHHHHHHcC
Q psy15725 332 KQLFRRVAAALP 343 (355)
Q Consensus 332 ~~l~~~l~~~i~ 343 (355)
++++++|.+.+.
T Consensus 183 ~~l~~~i~~~~~ 194 (196)
T PRK00454 183 DELRAAIAKWLA 194 (196)
T ss_pred HHHHHHHHHHhc
Confidence 999999988764
No 196
>PRK11058 GTPase HflX; Provisional
Probab=99.67 E-value=2.1e-15 Score=141.40 Aligned_cols=88 Identities=22% Similarity=0.226 Sum_probs=61.2
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcE-EEEecCCCCCC
Q psy15725 252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGYN 330 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~SA~~~~g 330 (355)
..+|++++|+|++++.+.+.+..|...+......++|+++|+||+|+..... .. . . ....+.+ ++++||++|.|
T Consensus 275 ~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~--~~-~-~-~~~~~~~~~v~ISAktG~G 349 (426)
T PRK11058 275 RQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE--PR-I-D-RDEENKPIRVWLSAQTGAG 349 (426)
T ss_pred hcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh--HH-H-H-HHhcCCCceEEEeCCCCCC
Confidence 3478888999988887766665444444433335799999999999863211 11 1 1 1123444 58999999999
Q ss_pred HHHHHHHHHHHcCC
Q psy15725 331 VKQLFRRVAAALPG 344 (355)
Q Consensus 331 v~~l~~~l~~~i~~ 344 (355)
+++++++|.+.+..
T Consensus 350 IdeL~e~I~~~l~~ 363 (426)
T PRK11058 350 IPLLFQALTERLSG 363 (426)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999998854
No 197
>KOG0072|consensus
Probab=99.67 E-value=1e-16 Score=122.01 Aligned_cols=86 Identities=24% Similarity=0.490 Sum_probs=71.6
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
...+|+++|-.|+||||++-|+.-++ ..+..||++++..... +++..+++||
T Consensus 17 ~e~rililgldGaGkttIlyrlqvge------------------------vvttkPtigfnve~v~----yKNLk~~vwd 68 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGE------------------------VVTTKPTIGFNVETVP----YKNLKFQVWD 68 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCc------------------------ccccCCCCCcCccccc----cccccceeeE
Confidence 78999999999999999998876533 2345678877655444 5889999999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhh
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 125 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~ 125 (355)
++|+...+++|..|+.+.|++|+|+|.+|+....
T Consensus 69 LggqtSirPyWRcYy~dt~avIyVVDssd~dris 102 (182)
T KOG0072|consen 69 LGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRIS 102 (182)
T ss_pred ccCcccccHHHHHHhcccceEEEEEeccchhhhh
Confidence 9999999999999999999999999999865443
No 198
>COG1159 Era GTPase [General function prediction only]
Probab=99.67 E-value=9.4e-16 Score=132.47 Aligned_cols=90 Identities=22% Similarity=0.243 Sum_probs=62.5
Q ss_pred ccCCcEEEEEEeCCCcccHHHHHHHH-HHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC-cEEEEecCCCC
Q psy15725 251 IRDSTVAVVVYDITNANSFHQTSKWI-DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAG 328 (355)
Q Consensus 251 ~~~~~~vi~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~SA~~~ 328 (355)
+.++|+++||+|++....- .++++ +.+.+ .+.|++++.||+|...++..-......+..... ..++++||++|
T Consensus 83 l~dvDlilfvvd~~~~~~~--~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g 157 (298)
T COG1159 83 LKDVDLILFVVDADEGWGP--GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKG 157 (298)
T ss_pred hccCcEEEEEEeccccCCc--cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecccc
Confidence 4568888888888775543 22333 33433 468999999999987554421222222222222 48999999999
Q ss_pred CCHHHHHHHHHHHcCCC
Q psy15725 329 YNVKQLFRRVAAALPGM 345 (355)
Q Consensus 329 ~gv~~l~~~l~~~i~~~ 345 (355)
.|++.+.+.+..+++..
T Consensus 158 ~n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 158 DNVDTLLEIIKEYLPEG 174 (298)
T ss_pred CCHHHHHHHHHHhCCCC
Confidence 99999999999999865
No 199
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.67 E-value=1.1e-15 Score=152.53 Aligned_cols=112 Identities=18% Similarity=0.192 Sum_probs=70.4
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+-.+|+|+|++++|||||+++|+...-.......+.+.+ . ..+....+..+ +++.......+.++..++.+||
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~-~----~~D~~~~e~~r--giti~~~~~~~~~~~~~i~liD 81 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGA-A----TMDWMEQEKER--GITITSAATTVFWKGHRINIID 81 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCc-c----ccCCCHHHHhc--CCCEecceEEEEECCeEEEEEE
Confidence 346999999999999999999986321110000010000 0 00111111122 3333333444445567899999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHH
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~ 130 (355)
|||+.+|...+...++.+|++++|+|+.+....+....|
T Consensus 82 TPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~ 120 (689)
T TIGR00484 82 TPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW 120 (689)
T ss_pred CCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH
Confidence 999998888888889999999999999986555443333
No 200
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.67 E-value=2.1e-15 Score=124.91 Aligned_cols=84 Identities=21% Similarity=0.263 Sum_probs=52.2
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHH-HHHHHhhc----CcEEEEecCCCC
Q psy15725 254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEE-GERKAKEL----NVMFIETSAKAG 328 (355)
Q Consensus 254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~-~~~~~~~~----~~~~~~~SA~~~ 328 (355)
+|++++|+|.+++.+.... .+...+.. .++|+++++||+|+.......... ...+.+.. ..+++++||+++
T Consensus 85 ~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (174)
T cd01895 85 ADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTG 160 (174)
T ss_pred cCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCC
Confidence 5667777777666554332 22222222 467888888888876442111111 12222222 258999999999
Q ss_pred CCHHHHHHHHHHH
Q psy15725 329 YNVKQLFRRVAAA 341 (355)
Q Consensus 329 ~gv~~l~~~l~~~ 341 (355)
.|++++++++.+.
T Consensus 161 ~~i~~~~~~l~~~ 173 (174)
T cd01895 161 QGVDKLFDAIDEV 173 (174)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999864
No 201
>PRK00089 era GTPase Era; Reviewed
Probab=99.67 E-value=1.1e-15 Score=137.94 Aligned_cols=90 Identities=21% Similarity=0.239 Sum_probs=60.3
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC-cEEEEecCCCCCC
Q psy15725 252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGYN 330 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~SA~~~~g 330 (355)
..+|++++|+|+++..+. ......+.+.. .+.|+++|+||+|+.............+.+..+ .+++++||+++.|
T Consensus 83 ~~~D~il~vvd~~~~~~~-~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g 158 (292)
T PRK00089 83 KDVDLVLFVVDADEKIGP-GDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN 158 (292)
T ss_pred hcCCEEEEEEeCCCCCCh-hHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence 347888899988873321 11222233332 478999999999996332222223333443333 6899999999999
Q ss_pred HHHHHHHHHHHcCCC
Q psy15725 331 VKQLFRRVAAALPGM 345 (355)
Q Consensus 331 v~~l~~~l~~~i~~~ 345 (355)
+++++++|.+.++..
T Consensus 159 v~~L~~~L~~~l~~~ 173 (292)
T PRK00089 159 VDELLDVIAKYLPEG 173 (292)
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999999999754
No 202
>PRK10218 GTP-binding protein; Provisional
Probab=99.66 E-value=2.9e-15 Score=145.60 Aligned_cols=102 Identities=21% Similarity=0.329 Sum_probs=74.6
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhc--CCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYD--SFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
-.||+++|+.++|||||+++|+.. .+...+. . .. +.+ +.. ....+.++++......+.++...+++|
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~--~--~~----~v~-D~~--~~E~erGiTi~~~~~~i~~~~~~inli 73 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAE--T--QE----RVM-DSN--DLEKERGITILAKNTAIKWNDYRINIV 73 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccc--c--ce----eee-ccc--cccccCceEEEEEEEEEecCCEEEEEE
Confidence 368999999999999999999973 2222110 0 00 000 111 122455667777777777888999999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhh
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 125 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~ 125 (355)
||||+.+|...+..+++.+|++++|||+.+....+
T Consensus 74 DTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~q 108 (607)
T PRK10218 74 DTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQ 108 (607)
T ss_pred ECCCcchhHHHHHHHHHhCCEEEEEEecccCccHH
Confidence 99999999999999999999999999998864443
No 203
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.66 E-value=9.5e-16 Score=149.08 Aligned_cols=97 Identities=22% Similarity=0.245 Sum_probs=64.2
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee--cCcE-----
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL--EDRT----- 84 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~----- 84 (355)
+...|+++|++|+|||||+++|.+..+....++ ..+++++..+....... .+..
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g-------------------~itq~ig~~~~~~~~~~~~~~~~~~~~~ 65 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAG-------------------GITQHIGATEVPIDVIEKIAGPLKKPLP 65 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCC-------------------ceEEeeceeeccccccccccceeccccc
Confidence 345799999999999999999987543322221 11223332222211100 0000
Q ss_pred -----EEEEEEecCCcccccccccccccCccEEEEEEECCC---cchhhhH
Q psy15725 85 -----VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN---ANSFHQT 127 (355)
Q Consensus 85 -----~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~ 127 (355)
-.+.+|||||++.|..++...++.+|++++|+|+++ +++++.+
T Consensus 66 ~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i 116 (586)
T PRK04004 66 IKLKIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAI 116 (586)
T ss_pred cccccCCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH
Confidence 127899999999999998888899999999999998 4555544
No 204
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.66 E-value=2.5e-15 Score=146.19 Aligned_cols=109 Identities=20% Similarity=0.323 Sum_probs=75.0
Q ss_pred EEEEEcCCCCChhHHHHHhhhcC--CCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDS--FDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~ 92 (355)
+|+++|+.++|||||+++|+... +.... .+. .+.+ +..+ .....++++......+.++...+++|||
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~--~v~------~~~~-D~~~--~ErerGiTI~~~~~~v~~~~~kinlIDT 71 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANE--AVA------ERVM-DSND--LERERGITILAKNTAIRYNGTKINIVDT 71 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccc--cce------eecc-cCch--HHHhCCccEEeeeEEEEECCEEEEEEEC
Confidence 79999999999999999999742 22211 110 0000 1111 1223455666666666677789999999
Q ss_pred CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
||+.+|...+..+++.+|++++|+|+.+.. ..+...|+..+.
T Consensus 72 PGh~DF~~ev~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~ 113 (594)
T TIGR01394 72 PGHADFGGEVERVLGMVDGVLLLVDASEGP-MPQTRFVLKKAL 113 (594)
T ss_pred CCHHHHHHHHHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHH
Confidence 999999999999999999999999998743 333344555544
No 205
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.66 E-value=5e-16 Score=132.27 Aligned_cols=120 Identities=19% Similarity=0.345 Sum_probs=85.3
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 94 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 94 (355)
+|+++|++|||||||+++|..+.+..++..+ ..+.........++...+.+||+||
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~------------------------~~~~~~~~~~~~~~~~~~~l~D~pG 57 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI------------------------EPNVATFILNSEGKGKKFRLVDVPG 57 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE------------------------eecceEEEeecCCCCceEEEEECCC
Confidence 6899999999999999999986554432211 1111111111113456799999999
Q ss_pred cccccccccccccCc-cEEEEEEECCCc-chhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725 95 QERFRSLIPSYIRDS-TVAVVVYDITNA-NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI 172 (355)
Q Consensus 95 ~~~~~~~~~~~~~~~-d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (355)
+.+++..+..+++.+ +++|+|+|+.+. .++.....|+..+....
T Consensus 58 ~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~---------------------------------- 103 (203)
T cd04105 58 HPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDL---------------------------------- 103 (203)
T ss_pred CHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHH----------------------------------
Confidence 999988888889998 999999999997 67777666555443210
Q ss_pred ccccccCCCccEEEEEeecCCCCc
Q psy15725 173 DDVRTERGSDVIIMLVGNKTDLSD 196 (355)
Q Consensus 173 ~~~~~~~~~~~piilv~nK~D~~~ 196 (355)
......+|+++++||+|+..
T Consensus 104 ----~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 104 ----EKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ----hhccCCCCEEEEecchhhcc
Confidence 01124799999999999854
No 206
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.65 E-value=1.8e-15 Score=150.31 Aligned_cols=86 Identities=17% Similarity=0.203 Sum_probs=63.1
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+...|+++|+.++|||||+++|....+...+. +++..+.....+.++ ...+.||
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~-----------------------~GIT~~iga~~v~~~--~~~Itfi 342 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEA-----------------------GGITQHIGAYQVETN--GGKITFL 342 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccc-----------------------CceeeeccEEEEEEC--CEEEEEE
Confidence 455789999999999999999998755432211 111111111222233 3579999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCc
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 121 (355)
||||+..|..++...+..+|++|+|||+++.
T Consensus 343 DTPGhe~F~~m~~rga~~aDiaILVVdAddG 373 (787)
T PRK05306 343 DTPGHEAFTAMRARGAQVTDIVVLVVAADDG 373 (787)
T ss_pred ECCCCccchhHHHhhhhhCCEEEEEEECCCC
Confidence 9999999999999889999999999999884
No 207
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.65 E-value=2.3e-15 Score=139.58 Aligned_cols=91 Identities=21% Similarity=0.221 Sum_probs=59.0
Q ss_pred CcEEEEEEeCC---CcccHHHHHHHHHHHHhhcC--CCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC--cEEEEecCC
Q psy15725 254 STVAVVVYDIT---NANSFHQTSKWIDDVRTERG--SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN--VMFIETSAK 326 (355)
Q Consensus 254 ~~~vi~v~d~~---~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~SA~ 326 (355)
++++++|+|++ +...++....|++++..+.. .++|+++|+||+|+.+...+ ......+.+..+ .+++++||+
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~ 316 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAA 316 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECC
Confidence 44555555554 23344445555555554321 46899999999998644333 222233333333 379999999
Q ss_pred CCCCHHHHHHHHHHHcCCC
Q psy15725 327 AGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 327 ~~~gv~~l~~~l~~~i~~~ 345 (355)
++.||++++++|.+.++..
T Consensus 317 tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 317 SGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CCcCHHHHHHHHHHHhhhC
Confidence 9999999999999999764
No 208
>KOG0395|consensus
Probab=99.65 E-value=1.4e-15 Score=127.87 Aligned_cols=120 Identities=39% Similarity=0.578 Sum_probs=109.7
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC-CCceEEEEeeCCCCCCcccCC
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDKRQVS 305 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~v~ 305 (355)
.+.+.+.|+||+|++.+..+...++..++++++||++++..||+.+..+...+.+... ..+|+++|+||+|+...+.+.
T Consensus 48 ~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~ 127 (196)
T KOG0395|consen 48 GEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVS 127 (196)
T ss_pred CEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccC
Confidence 4567788999999999999999999999999999999999999999999888855443 678999999999998889999
Q ss_pred HHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725 306 TEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346 (355)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~ 346 (355)
.+++..++..++++++++||+.+.||+++|..|.+.+...+
T Consensus 128 ~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~~~ 168 (196)
T KOG0395|consen 128 EEEGKALARSWGCAFIETSAKLNYNVDEVFYELVREIRLPR 168 (196)
T ss_pred HHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999988743
No 209
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.65 E-value=1e-15 Score=128.00 Aligned_cols=146 Identities=19% Similarity=0.216 Sum_probs=89.2
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
....+|+++|++|+|||||+|++++..+...+ .++.+.+.....+..+. .+.+|
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~-----------------------~~~~~~t~~~~~~~~~~---~~~li 69 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLART-----------------------SKTPGRTQLINFFEVND---GFRLV 69 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccc-----------------------cCCCCcceEEEEEEeCC---cEEEE
Confidence 45689999999999999999999985422221 11222111112222222 58999
Q ss_pred ecCCcc----------ccccccccccc---CccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccc
Q psy15725 91 DTAGQE----------RFRSLIPSYIR---DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHL 157 (355)
Q Consensus 91 D~~g~~----------~~~~~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (355)
||||.. .+......+++ .+|++++|+|++++.+..... ++..+..
T Consensus 70 DtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~--------------------- 127 (179)
T TIGR03598 70 DLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE--------------------- 127 (179)
T ss_pred eCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH---------------------
Confidence 999952 23333334444 358999999998865554432 2222221
Q ss_pred cccccCccccCccccccccccCCCccEEEEEeecCCCCcccce--ehhhhhhhhhcc--CeEEEEeeeeecccc
Q psy15725 158 SFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV--STEEGERKAKEL--NVMFIETSAKAGYNV 227 (355)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v--~~~~~~~~~~~~--~~~~~~~sa~~~~~v 227 (355)
.++|+++++||+|+...... ...+........ ..+++.+|+.++.++
T Consensus 128 -----------------------~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi 178 (179)
T TIGR03598 128 -----------------------RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGI 178 (179)
T ss_pred -----------------------cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCC
Confidence 27899999999998643211 122223333332 247999999998775
No 210
>KOG0074|consensus
Probab=99.64 E-value=1.1e-15 Score=116.03 Aligned_cols=152 Identities=22% Similarity=0.328 Sum_probs=109.5
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
+-+.+||+++|-.++|||||+.+|.... +....||-|++...... ...+++++
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED------------------------~~hltpT~GFn~k~v~~---~g~f~Lnv 66 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSED------------------------PRHLTPTNGFNTKKVEY---DGTFHLNV 66 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCC------------------------hhhccccCCcceEEEee---cCcEEEEE
Confidence 3567999999999999999999987632 23346777766555443 34579999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS 169 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (355)
||.+|+...+.+|..|+.+.|++|+|+|.+|+..|+.+...+-++...
T Consensus 67 wDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELlee-------------------------------- 114 (185)
T KOG0074|consen 67 WDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEE-------------------------------- 114 (185)
T ss_pred EecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhh--------------------------------
Confidence 999999999999999999999999999999988898876655555322
Q ss_pred cccccccccCCCccEEEEEeecCCCCcccceehhhhh---hhhhccCeEEEEeeeeeccccc
Q psy15725 170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGE---RKAKELNVMFIETSAKAGYNVK 228 (355)
Q Consensus 170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~---~~~~~~~~~~~~~sa~~~~~v~ 228 (355)
.+...+|+++.+||.|+--...+...... ...+.....+.++++..+.+..
T Consensus 115 --------eKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~ 168 (185)
T KOG0074|consen 115 --------EKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGST 168 (185)
T ss_pred --------hhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCcc
Confidence 44558999999999997433222221111 1112223567777777665543
No 211
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.64 E-value=1.6e-15 Score=123.49 Aligned_cols=139 Identities=22% Similarity=0.235 Sum_probs=93.5
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
++|+++|++|+|||||++++.+...... . ..++...++....+..+ ...+.+||||
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~-----------------~-----~~~~~~~~~~~~~~~~~--~~~~~i~Dtp 57 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIV-----------------S-----DIAGTTRDVIEESIDIG--GIPVRLIDTA 57 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEec-----------------c-----CCCCCccceEEEEEEeC--CEEEEEEECC
Confidence 5899999999999999999998542110 0 01111222222233232 3578999999
Q ss_pred Cccccccc--------ccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcc
Q psy15725 94 GQERFRSL--------IPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165 (355)
Q Consensus 94 g~~~~~~~--------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (355)
|...+... ....+..+|++++|+|++++.+......|..
T Consensus 58 G~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--------------------------------- 104 (157)
T cd04164 58 GIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--------------------------------- 104 (157)
T ss_pred CcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh---------------------------------
Confidence 97655432 2245678999999999999877766554422
Q ss_pred ccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceE
Q psy15725 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230 (355)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i 230 (355)
....|+++|+||+|+.+.... .......+++.+|+.++.+++.+
T Consensus 105 --------------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~~l 148 (157)
T cd04164 105 --------------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLDEL 148 (157)
T ss_pred --------------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHHHH
Confidence 137999999999998654322 23344668899999888776643
No 212
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.64 E-value=6.5e-16 Score=147.95 Aligned_cols=153 Identities=24% Similarity=0.246 Sum_probs=99.4
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
..++|+++|++|||||||+|+|++...... ...++...+.....+.+++. .+.+||
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~----------------------s~~~gtT~d~~~~~~~~~~~--~~~l~D 265 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVV----------------------DDVAGTTVDPVDSLIELGGK--TWRFVD 265 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccc----------------------cCCCCccCCcceEEEEECCE--EEEEEE
Confidence 358999999999999999999998543111 11122223333344445443 467999
Q ss_pred cCCcc----------cccccc-cccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccccccc
Q psy15725 92 TAGQE----------RFRSLI-PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFH 160 (355)
Q Consensus 92 ~~g~~----------~~~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
|||.. .|..++ ..+++.+|++++|+|+++..+++... ++..+..
T Consensus 266 TaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~------------------------ 320 (472)
T PRK03003 266 TAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE------------------------ 320 (472)
T ss_pred CCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH------------------------
Confidence 99963 222222 23568999999999999988887764 3333321
Q ss_pred ccCccccCccccccccccCCCccEEEEEeecCCCCcccc---eehhhhhhhhhccCeEEEEeeeeeccccceEEEE
Q psy15725 161 HANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ---VSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQ 233 (355)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~ 233 (355)
.+.|+++|+||+|+.+... +..+....+......+++.+||.++.+++.++..
T Consensus 321 --------------------~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~ 376 (472)
T PRK03003 321 --------------------AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPA 376 (472)
T ss_pred --------------------cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHH
Confidence 3789999999999964321 1111111222233468899999999999876543
No 213
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.62 E-value=1.5e-15 Score=148.02 Aligned_cols=148 Identities=20% Similarity=0.207 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+.|+++|+.++|||||+++|++... +.+..++.+++..++....+..++ ..+.+||+|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~--------------------d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtP 58 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAA--------------------DRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVP 58 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccC--------------------cCChhHhcCCceEEeEEEEEEeCC--EEEEEEECC
Confidence 4799999999999999999986321 223334445555555555555544 689999999
Q ss_pred CcccccccccccccCccEEEEEEECCCc---chhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNA---NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
|++.|...+...+.++|++++|+|+++. ++++.+. .+..
T Consensus 59 Ghe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~----il~~---------------------------------- 100 (581)
T TIGR00475 59 GHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLA----VLDL---------------------------------- 100 (581)
T ss_pred CHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHH----HHHH----------------------------------
Confidence 9999998888889999999999999984 3333332 1111
Q ss_pred ccccccccCCCccE-EEEEeecCCCCccccee--hhhhhhhhhcc----CeEEEEeeeeeccccceEE
Q psy15725 171 WIDDVRTERGSDVI-IMLVGNKTDLSDKRQVS--TEEGERKAKEL----NVMFIETSAKAGYNVKQVR 231 (355)
Q Consensus 171 ~~~~~~~~~~~~~p-iilv~nK~D~~~~~~v~--~~~~~~~~~~~----~~~~~~~sa~~~~~v~~i~ 231 (355)
.++| +++|+||+|+.+...+. ..+...+.... +.+++.+|+.++.+++.++
T Consensus 101 ----------lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~ 158 (581)
T TIGR00475 101 ----------LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELK 158 (581)
T ss_pred ----------cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHH
Confidence 2567 99999999986543221 22333433332 4789999999998877643
No 214
>KOG4423|consensus
Probab=99.62 E-value=2.1e-17 Score=131.41 Aligned_cols=159 Identities=36% Similarity=0.605 Sum_probs=131.4
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCc-EEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR-TVRLQL 89 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i 89 (355)
-.-+|++|+|..|+|||+++.|.+. ..++..+..|++.++..+.+..+.+ .+++++
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~-----------------------~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqL 79 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVH-----------------------QNFSYHYRATIGVDFALKVLQWDDKTIVRLQL 79 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHH-----------------------HHHHHHHHHHHhHHHHHHHhccChHHHHHHHH
Confidence 3458999999999999999999998 5566677888999999998888765 567999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS 169 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (355)
||..||++|..+...+++++.+..+|||+++..+|+....|.+++...
T Consensus 80 wdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk-------------------------------- 127 (229)
T KOG4423|consen 80 WDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSK-------------------------------- 127 (229)
T ss_pred hcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCc--------------------------------
Confidence 999999999999999999999999999999999999999999887543
Q ss_pred cccccccccCCCccEEEEEeecCCCCccccee-hhhhhhhhhccCe-EEEEeeeeeccccce
Q psy15725 170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVS-TEEGERKAKELNV-MFIETSAKAGYNVKQ 229 (355)
Q Consensus 170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~-~~~~~~~~~~~~~-~~~~~sa~~~~~v~~ 229 (355)
+......++|+|+.+||||..+..... .....++.++.+. ...++|++.+.++++
T Consensus 128 -----~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~E 184 (229)
T KOG4423|consen 128 -----LQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIPE 184 (229)
T ss_pred -----ccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChhH
Confidence 233445689999999999987654333 3556667777664 788899988777664
No 215
>KOG1423|consensus
Probab=99.61 E-value=6.3e-15 Score=126.67 Aligned_cols=91 Identities=16% Similarity=0.200 Sum_probs=61.2
Q ss_pred CCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEE
Q psy15725 6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV 85 (355)
Q Consensus 6 ~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 85 (355)
+.++..+..+|+|+|.||||||||.|.+++....... .. ..| +.......+..+..
T Consensus 65 de~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS--------------------~K-~~T---Tr~~ilgi~ts~eT 120 (379)
T KOG1423|consen 65 DEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVS--------------------RK-VHT---TRHRILGIITSGET 120 (379)
T ss_pred CchhcceEEEEEEEcCCCcchhhhhhHhhCCcccccc--------------------cc-ccc---eeeeeeEEEecCce
Confidence 3455677899999999999999999999996643321 11 111 11122233445667
Q ss_pred EEEEEecCCccc------------ccccccccccCccEEEEEEECCC
Q psy15725 86 RLQLWDTAGQER------------FRSLIPSYIRDSTVAVVVYDITN 120 (355)
Q Consensus 86 ~~~i~D~~g~~~------------~~~~~~~~~~~~d~ii~v~d~~~ 120 (355)
++.|+||||.-. +.+.....+..+|.+++|+|+++
T Consensus 121 Qlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~ 167 (379)
T KOG1423|consen 121 QLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASA 167 (379)
T ss_pred EEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccC
Confidence 999999999521 11123344668999999999996
No 216
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.61 E-value=7.8e-15 Score=137.78 Aligned_cols=106 Identities=14% Similarity=0.095 Sum_probs=59.3
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeee-cccceeeecccCCCCCcccccccee-eeeeeeeecC------c
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIV-GKTSLITRFMYDSFDNTYQATIGID-FLSKTMYLED------R 83 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~------~ 83 (355)
+.++|+++|+.++|||||+++|.+...+.. ..... +.|..+ . +..+.....++.++. ........+. .
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~-~~e~~rg~Ti~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTH-SEELKRGISIRL-G--YADAEIYKCPECDGPECYTTEPVCPNCGSETEL 78 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccC-HhHHHcCceeEe-c--ccccccccccccCcccccccccccccccccccc
Confidence 679999999999999999999975321111 00000 000000 0 000000000111100 0000000011 2
Q ss_pred EEEEEEEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725 84 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121 (355)
Q Consensus 84 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 121 (355)
...+.+|||||+++|...+...+..+|++++|+|+++.
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g 116 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEP 116 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCC
Confidence 35799999999999988887778888999999999864
No 217
>PRK12739 elongation factor G; Reviewed
Probab=99.61 E-value=2.3e-14 Score=143.20 Aligned_cols=108 Identities=18% Similarity=0.185 Sum_probs=68.7
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+-.+|+|+|+.++|||||+++|+...-.......+.+++.. .+....+..+.+..+..... +.++..+++++
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~-----~D~~~~E~~rgiti~~~~~~--~~~~~~~i~li 78 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAAT-----MDWMEQEQERGITITSAATT--CFWKGHRINII 78 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccc-----cCCChhHhhcCCCccceeEE--EEECCEEEEEE
Confidence 345789999999999999999998632111111111111100 01112222333333333333 33355789999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhh
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 125 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~ 125 (355)
||||+.+|...+...++.+|++++|+|+.+....+
T Consensus 79 DTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~q 113 (691)
T PRK12739 79 DTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQ 113 (691)
T ss_pred cCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHH
Confidence 99999888888888899999999999998864433
No 218
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.61 E-value=8.1e-15 Score=143.09 Aligned_cols=82 Identities=21% Similarity=0.257 Sum_probs=59.9
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725 254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333 (355)
Q Consensus 254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~ 333 (355)
+|++++|+|.++.+. ...+...+.+ .++|+++++||+|+.+.+.+. .+...+.+..+++++++||++|.|+++
T Consensus 73 aDvvI~VvDat~ler---~l~l~~ql~~---~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 73 PDLVVNVVDASNLER---NLYLTLQLLE---LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIER 145 (591)
T ss_pred CCEEEEEecCCcchh---hHHHHHHHHh---cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHH
Confidence 677788888775332 1122233333 579999999999986544443 345567777889999999999999999
Q ss_pred HHHHHHHHc
Q psy15725 334 LFRRVAAAL 342 (355)
Q Consensus 334 l~~~l~~~i 342 (355)
+++++.+..
T Consensus 146 L~~~i~~~~ 154 (591)
T TIGR00437 146 LKDAIRKAI 154 (591)
T ss_pred HHHHHHHHh
Confidence 999998864
No 219
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.60 E-value=1.3e-15 Score=125.42 Aligned_cols=112 Identities=20% Similarity=0.278 Sum_probs=92.5
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCH-
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST- 306 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~- 306 (355)
..+.+.+||++|++.++.+|..++.+++++++|+|++++.++.....|+..+.... .++|+++|+||.|+...+.+..
T Consensus 42 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i 120 (164)
T cd04162 42 QDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEI 120 (164)
T ss_pred CCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHH
Confidence 46778999999999999999999999999999999999999988888888876543 6899999999999865543321
Q ss_pred ---HHHHHHHhhcCcEEEEecCCC------CCCHHHHHHHHHH
Q psy15725 307 ---EEGERKAKELNVMFIETSAKA------GYNVKQLFRRVAA 340 (355)
Q Consensus 307 ---~~~~~~~~~~~~~~~~~SA~~------~~gv~~l~~~l~~ 340 (355)
.....+++..++++++|||++ ++||+++|+.++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 121 HKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred HHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 122345566678999999998 9999999998874
No 220
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.60 E-value=1.6e-14 Score=117.54 Aligned_cols=87 Identities=17% Similarity=0.178 Sum_probs=54.3
Q ss_pred EEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCCccc
Q psy15725 18 FLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 97 (355)
Q Consensus 18 vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 97 (355)
++|++|+|||||++++++...... ....++ ............ ....+.+||+||...
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~---------------------~~~~~~-~~~~~~~~~~~~-~~~~~~~~Dt~g~~~ 57 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIV---------------------SPVPGT-TTDPVEYVWELG-PLGPVVLIDTPGIDE 57 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcccccc---------------------CCCCCc-EECCeEEEEEec-CCCcEEEEECCCCCc
Confidence 589999999999999988543210 000010 011111111111 145799999999876
Q ss_pred ccccc-------cccccCccEEEEEEECCCcchhhhH
Q psy15725 98 FRSLI-------PSYIRDSTVAVVVYDITNANSFHQT 127 (355)
Q Consensus 98 ~~~~~-------~~~~~~~d~ii~v~d~~~~~s~~~~ 127 (355)
+.... ..+++.+|++++|+|..+.......
T Consensus 58 ~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~ 94 (163)
T cd00880 58 AGGLGREREELARRVLERADLILFVVDADLRADEEEE 94 (163)
T ss_pred cccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH
Confidence 65433 3467889999999999986555443
No 221
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.59 E-value=4.8e-15 Score=126.85 Aligned_cols=169 Identities=22% Similarity=0.241 Sum_probs=94.7
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCc--eeeee------cccceeeecccCCCCCccccccceeeeeeeeeecCcEEE
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTY--QATIV------GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVR 86 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 86 (355)
+|+++|++|+|||||+++|+...-.-.. .+.+. +...+-.....+....+..+.+..+ .....+......
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~--~~~~~~~~~~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITID--VAYRYFSTPKRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCee--cceeEEecCCce
Confidence 5899999999999999999875421110 00000 0000000000111111222222223 233334445568
Q ss_pred EEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccc
Q psy15725 87 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166 (355)
Q Consensus 87 ~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (355)
+.+|||||+.+|...+...++.+|++++|+|+++...-+....| ..+...
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~-~~~~~~----------------------------- 128 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHS-YILSLL----------------------------- 128 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHH-HHHHHc-----------------------------
Confidence 89999999988877666778999999999999875322221111 111111
Q ss_pred cCccccccccccCCCccEEEEEeecCCCCcccce----ehhhhhhhhhccC---eEEEEeeeeeccccce
Q psy15725 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV----STEEGERKAKELN---VMFIETSAKAGYNVKQ 229 (355)
Q Consensus 167 ~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v----~~~~~~~~~~~~~---~~~~~~sa~~~~~v~~ 229 (355)
...++++|+||+|+.+...- ...+...+....+ .+++.+|+.++.++.+
T Consensus 129 --------------~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 129 --------------GIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred --------------CCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 12457889999998642110 1122233333444 4689999999988764
No 222
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.59 E-value=2e-14 Score=134.93 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=27.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHHHcCCCCCC
Q psy15725 317 NVMFIETSAKAGYNVKQLFRRVAAALPGMDST 348 (355)
Q Consensus 317 ~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~ 348 (355)
+++++++||++|.|+++++++|.+.++.....
T Consensus 175 ~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~~~ 206 (411)
T PRK04000 175 NAPIIPVSALHKVNIDALIEAIEEEIPTPERD 206 (411)
T ss_pred CCeEEEEECCCCcCHHHHHHHHHHhCCCCCCC
Confidence 46899999999999999999999988765433
No 223
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.58 E-value=8.5e-15 Score=138.74 Aligned_cols=176 Identities=19% Similarity=0.220 Sum_probs=107.0
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcC--CCCCceee------eecccceeeecccCCCCCccccccceeeeeeeeeec
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDS--FDNTYQAT------IVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE 81 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~--~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 81 (355)
.-+.++|+++|+.++|||||+++|+... +.....+. ..|...+...+..+....+...++..+..... +.
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~--~~ 81 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWK--FE 81 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEE--Ec
Confidence 4567999999999999999999999732 22111000 01111111111222233333444444544444 44
Q ss_pred CcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeecccccccccccccc
Q psy15725 82 DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFH 160 (355)
Q Consensus 82 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
.....+.+|||||+++|.......+..+|++++|+|+++.+++.... .+...+...
T Consensus 82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~----------------------- 138 (426)
T TIGR00483 82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART----------------------- 138 (426)
T ss_pred cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH-----------------------
Confidence 45578999999999988777777788999999999999976442211 111111111
Q ss_pred ccCccccCccccccccccCCCccEEEEEeecCCCCcccc----eehhhhhhhhhccC-----eEEEEeeeeeccccce
Q psy15725 161 HANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ----VSTEEGERKAKELN-----VMFIETSAKAGYNVKQ 229 (355)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----v~~~~~~~~~~~~~-----~~~~~~sa~~~~~v~~ 229 (355)
....|+++++||+|+.+... ....+...+++..+ .+++++|+.++.|+..
T Consensus 139 -------------------~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 139 -------------------LGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred -------------------cCCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 01358999999999863211 11233334444433 6799999999988765
No 224
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.58 E-value=1e-14 Score=145.61 Aligned_cols=147 Identities=16% Similarity=0.219 Sum_probs=102.6
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+.++|+++|++|||||||+|++++.+... +. ..|.++..+...+..+...+.+||
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~v------------------gn-------~pGvTve~k~g~~~~~~~~i~lvD 56 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRV------------------GN-------WAGVTVERKEGQFSTTDHQVTLVD 56 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcc------------------CC-------CCCceEeeEEEEEEcCceEEEEEE
Confidence 35789999999999999999998843200 11 123334444444556667899999
Q ss_pred cCCcccccccc----------cccc--cCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccc
Q psy15725 92 TAGQERFRSLI----------PSYI--RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSF 159 (355)
Q Consensus 92 ~~g~~~~~~~~----------~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
|||+..+.... ..++ ..+|++++|+|+++.+.. ..|..++..
T Consensus 57 tPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e----------------------- 110 (772)
T PRK09554 57 LPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERN---LYLTLQLLE----------------------- 110 (772)
T ss_pred CCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhh---HHHHHHHHH-----------------------
Confidence 99987664321 1222 378999999999885432 234444432
Q ss_pred cccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725 160 HHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVR 231 (355)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~ 231 (355)
.++|+++++||+|+.+.+.+. ....++.+..+++++.+|+..+.+++++.
T Consensus 111 ---------------------~giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~~g~GIdeL~ 160 (772)
T PRK09554 111 ---------------------LGIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVSTRGRGIEALK 160 (772)
T ss_pred ---------------------cCCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEeecCCCHHHHH
Confidence 279999999999986544443 34566777889999999999998877543
No 225
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.58 E-value=7.6e-15 Score=139.67 Aligned_cols=152 Identities=19% Similarity=0.170 Sum_probs=95.0
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
...++|+++|++|||||||+|+|++...... ... ++...+.....+..++ ..+.+|
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~-----------------~~~-----~gtt~~~~~~~~~~~~--~~~~li 225 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIV-----------------SDI-----AGTTRDSIDIPFERNG--KKYLLI 225 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeec-----------------CCC-----CCceECcEeEEEEECC--cEEEEE
Confidence 3458999999999999999999998542110 011 1111122222233333 368999
Q ss_pred ecCCcccccccc-----------cccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccc
Q psy15725 91 DTAGQERFRSLI-----------PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSF 159 (355)
Q Consensus 91 D~~g~~~~~~~~-----------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
||||..++.... ..+++.+|++++|+|++++.+.+... +...+..
T Consensus 226 DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----------------------- 281 (429)
T TIGR03594 226 DTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLILE----------------------- 281 (429)
T ss_pred ECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH-----------------------
Confidence 999976544322 23578999999999999987766543 2222221
Q ss_pred cccCccccCccccccccccCCCccEEEEEeecCCCCc-ccceeh--hhh-hhhhhccCeEEEEeeeeeccccceEE
Q psy15725 160 HHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD-KRQVST--EEG-ERKAKELNVMFIETSAKAGYNVKQVR 231 (355)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~-~~~v~~--~~~-~~~~~~~~~~~~~~sa~~~~~v~~i~ 231 (355)
.+.|+++|+||+|+.. ...... ... ..+......+++++||.++.+++.++
T Consensus 282 ---------------------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~ 336 (429)
T TIGR03594 282 ---------------------AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLL 336 (429)
T ss_pred ---------------------cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHH
Confidence 2689999999999862 111100 111 11111224789999999999887653
No 226
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.58 E-value=4.5e-14 Score=121.68 Aligned_cols=104 Identities=16% Similarity=0.180 Sum_probs=59.2
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccc----cccceeeeee-------------e
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQ----ATIGIDFLSK-------------T 77 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~t~~~~~~~~-------------~ 77 (355)
||+++|+.++|||||+++|..+.+.+...... ..+.++..-.-..... ..++++.... .
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~----~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 76 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKAR----LNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDI 76 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEE----eehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccc
Confidence 58999999999999999999877655322111 0011000000000000 0111111000 0
Q ss_pred eeecCcEEEEEEEecCCccccccccccccc--CccEEEEEEECCCcc
Q psy15725 78 MYLEDRTVRLQLWDTAGQERFRSLIPSYIR--DSTVAVVVYDITNAN 122 (355)
Q Consensus 78 ~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~ii~v~d~~~~~ 122 (355)
.........+.++||||+++|.......+. .+|++++|+|+.+..
T Consensus 77 ~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~ 123 (224)
T cd04165 77 EICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGI 123 (224)
T ss_pred eeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCC
Confidence 011222457899999999988766555554 689999999998753
No 227
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.57 E-value=1.6e-14 Score=136.94 Aligned_cols=175 Identities=21% Similarity=0.249 Sum_probs=102.9
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCcee--------eeecccceeeecccCCCCCccccccceeeeeeeeeecC
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQA--------TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED 82 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 82 (355)
-+.++|+++|++++|||||+++|+...-.-.... ...|...+-..+..+....+..+.+..+.... .++.
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~--~~~~ 81 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHK--KFET 81 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeE--EEec
Confidence 3679999999999999999999997432111000 00011111111111222233333433343333 3444
Q ss_pred cEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHH-HHHHhhhcCCceEEeeccccccccccccccc
Q psy15725 83 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW-IDDVRTERGSDVIIMLVGSIETNFTHLSFHH 161 (355)
Q Consensus 83 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (355)
+...+.+|||||+++|...+...++.+|++++|+|++++..+.....+ ...+...
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~------------------------ 137 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL------------------------ 137 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc------------------------
Confidence 567899999999998877666668899999999999874233222222 2222111
Q ss_pred cCccccCccccccccccCCCccEEEEEeecCCCCcccc----eehhhhhhhhhccC-----eEEEEeeeeeccccceE
Q psy15725 162 ANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ----VSTEEGERKAKELN-----VMFIETSAKAGYNVKQV 230 (355)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----v~~~~~~~~~~~~~-----~~~~~~sa~~~~~v~~i 230 (355)
...|+++++||+|+.+... ....+...+....+ .+++.+|+.++.+++..
T Consensus 138 -------------------~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 138 -------------------GINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred -------------------CCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 1247999999999864211 11123333333333 57999999999988754
No 228
>PRK00007 elongation factor G; Reviewed
Probab=99.57 E-value=4.3e-14 Score=141.18 Aligned_cols=112 Identities=19% Similarity=0.221 Sum_probs=69.0
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+-.+|+++|++++|||||+++|+...-.......+.+++.. .+....+..+.+..+ .....+.++..+++++|
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~-----~D~~~~E~~rg~ti~--~~~~~~~~~~~~~~liD 81 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAAT-----MDWMEQEQERGITIT--SAATTCFWKDHRINIID 81 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCccc-----CCCCHHHHhCCCCEe--ccEEEEEECCeEEEEEe
Confidence 45699999999999999999998632111111111111100 011111222233333 33333444557899999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHH
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~ 130 (355)
|||+.+|.......++.+|++++|+|+......+....|
T Consensus 82 TPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~ 120 (693)
T PRK00007 82 TPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVW 120 (693)
T ss_pred CCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHH
Confidence 999988877777788999999999999876544443333
No 229
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.56 E-value=1.8e-14 Score=123.61 Aligned_cols=106 Identities=20% Similarity=0.291 Sum_probs=68.6
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec--------CcEEE
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE--------DRTVR 86 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--------~~~~~ 86 (355)
+|+++|+.++|||||+.+|+...-... ....+. .+++.... .+....+.+......+.++ ++...
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~--~~~~g~----~~~~D~~~-~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~ 74 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIIS--EKLAGK----ARYMDSRE-DEQERGITMKSSAISLYFEYEEEDKADGNEYL 74 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCc--cccCCc----eeeccCCH-HHHHhccccccceEEEEEecCcccccCCCceE
Confidence 799999999999999999987432110 001111 11221111 1112222222222222222 44788
Q ss_pred EEEEecCCcccccccccccccCccEEEEEEECCCcchhhhH
Q psy15725 87 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127 (355)
Q Consensus 87 ~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~ 127 (355)
+++|||||+.+|......+++.+|++++|||+.+..+.+..
T Consensus 75 i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~ 115 (222)
T cd01885 75 INLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE 115 (222)
T ss_pred EEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH
Confidence 99999999999999999999999999999999987666543
No 230
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.55 E-value=8.4e-14 Score=136.29 Aligned_cols=85 Identities=20% Similarity=0.181 Sum_probs=57.0
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 94 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 94 (355)
-|+++|+.++|||||+++|++... +.+..+....+.++.....+.... ...+.+|||||
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~--------------------dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPG 60 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNA--------------------DRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPG 60 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--------------------ccchhcccCCceEEeeeEEEecCC-CcEEEEEECCC
Confidence 589999999999999999986321 222223322333333322222222 23589999999
Q ss_pred cccccccccccccCccEEEEEEECCC
Q psy15725 95 QERFRSLIPSYIRDSTVAVVVYDITN 120 (355)
Q Consensus 95 ~~~~~~~~~~~~~~~d~ii~v~d~~~ 120 (355)
++.|...+...+..+|++++|+|+++
T Consensus 61 he~fi~~m~~g~~~~D~~lLVVda~e 86 (614)
T PRK10512 61 HEKFLSNMLAGVGGIDHALLVVACDD 86 (614)
T ss_pred HHHHHHHHHHHhhcCCEEEEEEECCC
Confidence 98887777777788888888888766
No 231
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.55 E-value=4.7e-14 Score=114.80 Aligned_cols=113 Identities=54% Similarity=0.867 Sum_probs=100.5
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE 307 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~ 307 (355)
..+.+.+||++|.+.+...+..++++++++++|+|++++.+++.+..|+..+......++|+++++||+|+.++.....+
T Consensus 47 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 126 (159)
T cd00154 47 KTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTE 126 (159)
T ss_pred EEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHH
Confidence 45678899999999999999999999999999999999999999999999988766567999999999999756667777
Q ss_pred HHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHH
Q psy15725 308 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAA 340 (355)
Q Consensus 308 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~ 340 (355)
+...+....+++++++||+++.|++++|++|.+
T Consensus 127 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 127 EAQQFAKENGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred HHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence 888888878899999999999999999999863
No 232
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.55 E-value=2.9e-14 Score=116.91 Aligned_cols=111 Identities=17% Similarity=0.235 Sum_probs=87.3
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc---CCCceEEEEeeCCCCCCcccC
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER---GSDVIIMLVGNKTDLSDKRQV 304 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~v 304 (355)
..+.+.+||++|.+.+..+|..++..++++++|+|+++..++.....|+..+.... ..++|+++|+||+|+.+..
T Consensus 43 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~-- 120 (162)
T cd04157 43 GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL-- 120 (162)
T ss_pred CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--
Confidence 35678899999999999999999999999999999999998888878877765432 2579999999999986432
Q ss_pred CHHHHHHHH-----hhcCcEEEEecCCCCCCHHHHHHHHHH
Q psy15725 305 STEEGERKA-----KELNVMFIETSAKAGYNVKQLFRRVAA 340 (355)
Q Consensus 305 ~~~~~~~~~-----~~~~~~~~~~SA~~~~gv~~l~~~l~~ 340 (355)
...+..... ....++++++||++|.|++++|++|.+
T Consensus 121 ~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 121 TAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred CHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 122222111 112357999999999999999999975
No 233
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.55 E-value=4.9e-14 Score=115.75 Aligned_cols=148 Identities=18% Similarity=0.162 Sum_probs=89.0
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~ 92 (355)
..+|+++|++|+|||||++++.+....... . ...+.. . ............+.+|||
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~-----------------~----~~~~~~-~--~~~~~~~~~~~~~~liDt 58 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVS-----------------P----KPQTTR-N--RIRGIYTDDDAQIIFVDT 58 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEecc-----------------C----CCCcee-c--eEEEEEEcCCeEEEEEEC
Confidence 468999999999999999999885421110 0 000100 0 111112233467899999
Q ss_pred CCcccccc--------cccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCc
Q psy15725 93 AGQERFRS--------LIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164 (355)
Q Consensus 93 ~g~~~~~~--------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (355)
||...... .....+..+|++++|+|++++.+. ....+...+..
T Consensus 59 pG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~---------------------------- 109 (168)
T cd04163 59 PGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGE-GDEFILELLKK---------------------------- 109 (168)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCc-hHHHHHHHHHH----------------------------
Confidence 99754322 233457889999999999987221 11223333322
Q ss_pred cccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhcc-CeEEEEeeeeeccccce
Q psy15725 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL-NVMFIETSAKAGYNVKQ 229 (355)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~-~~~~~~~sa~~~~~v~~ 229 (355)
.+.|+++|+||+|+.............+.... ..+++.+|+..+.+++.
T Consensus 110 ----------------~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 159 (168)
T cd04163 110 ----------------SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDE 159 (168)
T ss_pred ----------------hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHH
Confidence 16899999999998632222222233333333 35788888887776654
No 234
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.55 E-value=1.5e-14 Score=119.50 Aligned_cols=113 Identities=19% Similarity=0.236 Sum_probs=89.1
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC-CCceEEEEeeCCCCCCcccCCH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDKRQVST 306 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~v~~ 306 (355)
..+.+.+||++|+..++.+|..++.+++++++|+|+++..+++.+..|+..+..... .++|+++|+||.|+...+....
T Consensus 41 ~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~ 120 (167)
T cd04161 41 DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGAD 120 (167)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHH
Confidence 457789999999999999999999999999999999999999999889888865432 5899999999999864431111
Q ss_pred H-H---HHHHHhh--cCcEEEEecCCCC------CCHHHHHHHHHH
Q psy15725 307 E-E---GERKAKE--LNVMFIETSAKAG------YNVKQLFRRVAA 340 (355)
Q Consensus 307 ~-~---~~~~~~~--~~~~~~~~SA~~~------~gv~~l~~~l~~ 340 (355)
. . ...+++. ..+++++|||++| .|+++.|+||..
T Consensus 121 i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 121 VIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred HHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 0 1 1122222 2368899999998 899999999975
No 235
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.54 E-value=6.2e-14 Score=112.30 Aligned_cols=159 Identities=26% Similarity=0.333 Sum_probs=106.0
Q ss_pred CCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEE
Q psy15725 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRL 87 (355)
Q Consensus 8 ~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 87 (355)
.......||+|.|+.++||||++.++..........+.-. .+......-|+..++..... +....+
T Consensus 5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~-----------~s~k~kr~tTva~D~g~~~~---~~~~~v 70 (187)
T COG2229 5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASS-----------VSGKGKRPTTVAMDFGSIEL---DEDTGV 70 (187)
T ss_pred cccccceeEEEEcccccchhhHHHHhhccccceeeccccc-----------cccccccceeEeecccceEE---cCcceE
Confidence 3456778999999999999999999887543222111000 00011112355555555544 233578
Q ss_pred EEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcccc
Q psy15725 88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ 167 (355)
Q Consensus 88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (355)
.+++||||++|+-.|..+.++++++++++|.+++..+ .....++.+...
T Consensus 71 ~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~------------------------------ 119 (187)
T COG2229 71 HLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR------------------------------ 119 (187)
T ss_pred EEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc------------------------------
Confidence 9999999999999999999999999999999999888 434444443321
Q ss_pred CccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhh-c-cCeEEEEeeeeeccc
Q psy15725 168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK-E-LNVMFIETSAKAGYN 226 (355)
Q Consensus 168 ~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~-~-~~~~~~~~sa~~~~~ 226 (355)
..+|+++.+||.|+.+... .+...++.+ . ...+.+..++..+.+
T Consensus 120 -------------~~ip~vVa~NK~DL~~a~p--pe~i~e~l~~~~~~~~vi~~~a~e~~~ 165 (187)
T COG2229 120 -------------NPIPVVVAINKQDLFDALP--PEKIREALKLELLSVPVIEIDATEGEG 165 (187)
T ss_pred -------------cCCCEEEEeeccccCCCCC--HHHHHHHHHhccCCCceeeeecccchh
Confidence 2399999999999976432 222222222 2 367777777775544
No 236
>PRK12740 elongation factor G; Reviewed
Probab=99.54 E-value=1.2e-13 Score=138.04 Aligned_cols=105 Identities=21% Similarity=0.230 Sum_probs=65.2
Q ss_pred EcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCCcccc
Q psy15725 19 LGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 98 (355)
Q Consensus 19 vG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 98 (355)
+|+.|+|||||+++|+...-.......+.++. . ..+....+..+++.+. .....+.++...+.+|||||+.+|
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~-~----~~d~~~~e~~rgiTi~--~~~~~~~~~~~~i~liDtPG~~~~ 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGT-T----TMDFMPEERERGISIT--SAATTCEWKGHKINLIDTPGHVDF 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCc-c----cCCCChHHHhcCCCee--eceEEEEECCEEEEEEECCCcHHH
Confidence 69999999999999977432111111110000 0 0011112222333333 333334445678999999999988
Q ss_pred cccccccccCccEEEEEEECCCcchhhhHHHH
Q psy15725 99 RSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130 (355)
Q Consensus 99 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~ 130 (355)
...+...++.+|++++|+|+++....+....|
T Consensus 74 ~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~ 105 (668)
T PRK12740 74 TGEVERALRVLDGAVVVVCAVGGVEPQTETVW 105 (668)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHH
Confidence 88888889999999999999987666554444
No 237
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.54 E-value=3.2e-14 Score=122.27 Aligned_cols=105 Identities=23% Similarity=0.284 Sum_probs=67.1
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeee--ee---cCcEEEEEE
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTM--YL---EDRTVRLQL 89 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~--~~---~~~~~~~~i 89 (355)
+|+++|+.|+|||||+++|+.............+.+ .+++ +....+. ..+.++..... .+ +++...+.+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~---~~~~-d~~~~e~--~~giti~~~~~~~~~~~~~~~~~~i~i 75 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKP---LRYT-DIRKDEQ--ERGISIKSSPISLVLPDSKGKSYLFNI 75 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCc---eeEC-CCCHHHH--HcCccccccceeEEEEcCCCCEEEEEE
Confidence 699999999999999999998664332110000000 0000 1111111 12222222222 22 345688999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhh
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 125 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~ 125 (355)
|||||+.+|...+..++..+|++++|+|+.+..++.
T Consensus 76 iDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~ 111 (213)
T cd04167 76 IDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSN 111 (213)
T ss_pred EECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHH
Confidence 999999999888888899999999999998876654
No 238
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.54 E-value=2.6e-14 Score=117.08 Aligned_cols=110 Identities=25% Similarity=0.441 Sum_probs=86.9
Q ss_pred eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC-CCceEEEEeeCCCCCCcccCCHH
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDKRQVSTE 307 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~v~~~ 307 (355)
.+.+.+||++|+..+...|..++.+++++++|+|++++.++.....|+..+..... .+.|+++|+||+|+... ....
T Consensus 43 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~ 120 (160)
T cd04156 43 HLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAE 120 (160)
T ss_pred ceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHH
Confidence 46789999999999998899999999999999999999888888888877654322 58999999999998532 2222
Q ss_pred HHHH------HHhhcCcEEEEecCCCCCCHHHHHHHHHH
Q psy15725 308 EGER------KAKELNVMFIETSAKAGYNVKQLFRRVAA 340 (355)
Q Consensus 308 ~~~~------~~~~~~~~~~~~SA~~~~gv~~l~~~l~~ 340 (355)
+... +....++++++|||++|.||+++|++|.+
T Consensus 121 ~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 121 EITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 2221 11223468999999999999999999975
No 239
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.53 E-value=7.1e-13 Score=115.33 Aligned_cols=95 Identities=19% Similarity=0.232 Sum_probs=63.8
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.-...+++||.|+||||||+++|++.+.. ...|.=| +.......+.+++.++++.
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~se----------------------va~y~FT---Tl~~VPG~l~Y~ga~IQil 115 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSE----------------------VADYPFT---TLEPVPGMLEYKGAQIQLL 115 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCcc----------------------ccccCce---ecccccceEeecCceEEEE
Confidence 34578999999999999999999984410 0011100 1222334566777899999
Q ss_pred ecCCccc-------ccccccccccCccEEEEEEECCCcch-hhhHHHH
Q psy15725 91 DTAGQER-------FRSLIPSYIRDSTVAVVVYDITNANS-FHQTSKW 130 (355)
Q Consensus 91 D~~g~~~-------~~~~~~~~~~~~d~ii~v~d~~~~~s-~~~~~~~ 130 (355)
|+||.-+ -....-...+.||.+++|+|+..... .+.+...
T Consensus 116 d~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~E 163 (365)
T COG1163 116 DLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERE 163 (365)
T ss_pred cCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHHHH
Confidence 9998521 12345567899999999999997655 4444433
No 240
>PRK12736 elongation factor Tu; Reviewed
Probab=99.53 E-value=2.1e-13 Score=127.68 Aligned_cols=107 Identities=15% Similarity=0.121 Sum_probs=65.9
Q ss_pred CCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEE
Q psy15725 6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV 85 (355)
Q Consensus 6 ~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 85 (355)
.+...-+.++|+++|+.++|||||+++|++..... +...+...-..+....+....+..+. ....++.+..
T Consensus 5 ~~~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~-------g~~~~~~~~~~d~~~~E~~rg~T~~~--~~~~~~~~~~ 75 (394)
T PRK12736 5 KFDRSKPHVNIGTIGHVDHGKTTLTAAITKVLAER-------GLNQAKDYDSIDAAPEEKERGITINT--AHVEYETEKR 75 (394)
T ss_pred hhccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhh-------ccccccchhhhcCCHHHHhcCccEEE--EeeEecCCCc
Confidence 34456678999999999999999999998632110 00000000000111222223333333 3334444556
Q ss_pred EEEEEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725 86 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121 (355)
Q Consensus 86 ~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 121 (355)
.+.+|||||+++|.......+..+|++++|+|+.+.
T Consensus 76 ~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g 111 (394)
T PRK12736 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG 111 (394)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 789999999988877666667788899999888763
No 241
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.53 E-value=7.6e-14 Score=117.68 Aligned_cols=163 Identities=15% Similarity=0.101 Sum_probs=97.8
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+.++|+++|+.++|||||+++|++..... +..........+....+..+.+ +.......+..+..++.++|
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~-------g~~~~~~~~~~d~~~~E~~rg~--Ti~~~~~~~~~~~~~i~~iD 71 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKK-------GGAKFKKYDEIDKAPEEKARGI--TINTAHVEYETANRHYAHVD 71 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhc-------ccccccccccccCChhhhhcCc--cEEeeeeEecCCCeEEEEEE
Confidence 35899999999999999999998742100 0000000000011112222233 33333344455567899999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW 171 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (355)
|||+..|.......+..+|++++|+|+.+...-+. ......+..
T Consensus 72 tPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~----------------------------------- 115 (195)
T cd01884 72 CPGHADYIKNMITGAAQMDGAILVVSATDGPMPQT-REHLLLARQ----------------------------------- 115 (195)
T ss_pred CcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH-----------------------------------
Confidence 99999888877888899999999999987432222 122222222
Q ss_pred cccccccCCCccE-EEEEeecCCCCccccee---hhhhhhhhhcc-----CeEEEEeeeeeccccc
Q psy15725 172 IDDVRTERGSDVI-IMLVGNKTDLSDKRQVS---TEEGERKAKEL-----NVMFIETSAKAGYNVK 228 (355)
Q Consensus 172 ~~~~~~~~~~~~p-iilv~nK~D~~~~~~v~---~~~~~~~~~~~-----~~~~~~~sa~~~~~v~ 228 (355)
.++| ++++.||.|+..+.... ..+...+.... +++++.+|+.++.|..
T Consensus 116 ---------~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 116 ---------VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred ---------cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCC
Confidence 1566 78999999985322211 12233333322 4689999999887643
No 242
>KOG0462|consensus
Probab=99.52 E-value=2e-13 Score=125.88 Aligned_cols=100 Identities=16% Similarity=0.171 Sum_probs=66.1
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec---CcEEEEEE
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE---DRTVRLQL 89 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~~~~i 89 (355)
--|+.||-+-..|||||..||+...-... ....-.|++. ...-+ ...|+++...+..+- ++...+++
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~-------~~~~q~q~LD-kl~vE--RERGITIkaQtasify~~~~~ylLNL 129 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLELTGTID-------NNIGQEQVLD-KLQVE--RERGITIKAQTASIFYKDGQSYLLNL 129 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhCCCC-------CCCchhhhhh-hhhhh--hhcCcEEEeeeeEEEEEcCCceEEEe
Confidence 45899999999999999999998542000 0001111111 11111 233444443333332 45589999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcc
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 122 (355)
+||||+-+|.......+..|||+|+|+|++..-
T Consensus 130 IDTPGHvDFs~EVsRslaac~G~lLvVDA~qGv 162 (650)
T KOG0462|consen 130 IDTPGHVDFSGEVSRSLAACDGALLVVDASQGV 162 (650)
T ss_pred ecCCCcccccceehehhhhcCceEEEEEcCcCc
Confidence 999999999999988899999999999987743
No 243
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.52 E-value=1.9e-14 Score=117.73 Aligned_cols=111 Identities=21% Similarity=0.337 Sum_probs=84.7
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHh-hcCCCceEEEEeeCCCCCCcccCCH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT-ERGSDVIIMLVGNKTDLSDKRQVST 306 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~v~~ 306 (355)
..+.+.+||++|.+.++.+|..++..++++++|+|++++.++....+++..+.. ....++|+++++||+|+.+.. ..
T Consensus 41 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~ 118 (158)
T cd04151 41 KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SE 118 (158)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CH
Confidence 356789999999999999999999999999999999998877766665554433 222579999999999986332 12
Q ss_pred HHH-HHHH----hhcCcEEEEecCCCCCCHHHHHHHHHH
Q psy15725 307 EEG-ERKA----KELNVMFIETSAKAGYNVKQLFRRVAA 340 (355)
Q Consensus 307 ~~~-~~~~----~~~~~~~~~~SA~~~~gv~~l~~~l~~ 340 (355)
.+. ..+. ...+++++++||++|.||+++|++|++
T Consensus 119 ~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 119 AEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 222 1221 112357999999999999999999975
No 244
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.52 E-value=3.4e-14 Score=128.10 Aligned_cols=61 Identities=20% Similarity=0.250 Sum_probs=44.9
Q ss_pred CCceEEEEeeCCCCCCcccCCHHHHHHH-HhhcCcEEEEecCCCCCCHHHHHH-HHHHHcCCCCCCC
Q psy15725 285 SDVIIMLVGNKTDLSDKRQVSTEEGERK-AKELNVMFIETSAKAGYNVKQLFR-RVAAALPGMDSTE 349 (355)
Q Consensus 285 ~~~piilv~nK~Dl~~~~~v~~~~~~~~-~~~~~~~~~~~SA~~~~gv~~l~~-~l~~~i~~~~~~~ 349 (355)
..+|+++++||.|+.+..... ..+ .+..+.+++++||+.+.|++++.+ .+.+++|.....+
T Consensus 213 t~KPvI~VlNK~Dl~~~~~~~----~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~ 275 (318)
T cd01899 213 RSKPMVIAANKADIPDAENNI----SKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFE 275 (318)
T ss_pred cCCcEEEEEEHHHccChHHHH----HHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCce
Confidence 569999999999975332211 122 222345899999999999999998 6999998765443
No 245
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=1.8e-13 Score=123.13 Aligned_cols=166 Identities=19% Similarity=0.190 Sum_probs=116.3
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.++-..+||-+|.+|||||..+|+.-.-.....+++-++. .+++..+.|..-. ...|+++....+..++.+..+++.
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk--~~~~a~SDWM~iE-kqRGISVtsSVMqF~Y~~~~iNLL 86 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRK--SGKHAKSDWMEIE-KQRGISVTSSVMQFDYADCLVNLL 86 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeecc--CCcccccHHHHHH-HhcCceEEeeEEEeccCCeEEecc
Confidence 4577899999999999999999987544444455553322 2233334444421 234667777888888888999999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
||||+++|...+...+-.+|..+.|+|+...-.-+.++ +++-.+
T Consensus 87 DTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~K-LfeVcr----------------------------------- 130 (528)
T COG4108 87 DTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLK-LFEVCR----------------------------------- 130 (528)
T ss_pred CCCCccccchhHHHHHHhhheeeEEEecccCccHHHHH-HHHHHh-----------------------------------
Confidence 99999999999999999999999999998854333322 223222
Q ss_pred ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccc
Q psy15725 171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226 (355)
Q Consensus 171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~ 226 (355)
..++||+-.+||.|.... -+.+...+..+.++.....++.+.|.+
T Consensus 131 ---------lR~iPI~TFiNKlDR~~r--dP~ELLdEiE~~L~i~~~PitWPIG~g 175 (528)
T COG4108 131 ---------LRDIPIFTFINKLDREGR--DPLELLDEIEEELGIQCAPITWPIGMG 175 (528)
T ss_pred ---------hcCCceEEEeeccccccC--ChHHHHHHHHHHhCcceecccccccCC
Confidence 248999999999997532 233444555566677666666665554
No 246
>PRK12735 elongation factor Tu; Reviewed
Probab=99.51 E-value=5e-13 Score=125.18 Aligned_cols=106 Identities=14% Similarity=0.152 Sum_probs=65.2
Q ss_pred CCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeec-ccCCCCCccccccceeeeeeeeeecCcE
Q psy15725 6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRF-MYDSFDNTYQATIGIDFLSKTMYLEDRT 84 (355)
Q Consensus 6 ~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 84 (355)
-+...-+.++|+++|+.++|||||+++|++..... +...+ ..+ ..+....+....+..+ .....+....
T Consensus 5 ~~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~-------g~~~~-~~~~~~d~~~~E~~rGiT~~--~~~~~~~~~~ 74 (396)
T PRK12735 5 KFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKK-------GGGEA-KAYDQIDNAPEEKARGITIN--TSHVEYETAN 74 (396)
T ss_pred hcCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhc-------CCccc-chhhhccCChhHHhcCceEE--EeeeEEcCCC
Confidence 34556788999999999999999999998732100 00000 000 0011111222222222 3333444455
Q ss_pred EEEEEEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725 85 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121 (355)
Q Consensus 85 ~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 121 (355)
.++.++||||+.+|...+...+..+|++++|+|+.+.
T Consensus 75 ~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g 111 (396)
T PRK12735 75 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG 111 (396)
T ss_pred cEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC
Confidence 6789999999988776666667788888888888663
No 247
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.50 E-value=9.6e-14 Score=132.31 Aligned_cols=152 Identities=22% Similarity=0.196 Sum_probs=93.8
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
...++|+++|++|||||||+|+|++...... +.. ++...+.....+.. ....+.+|
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~-----------------~~~-----~gtt~~~~~~~~~~--~~~~~~lv 226 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIV-----------------SDI-----AGTTRDSIDTPFER--DGQKYTLI 226 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceee-----------------cCC-----CCceEEEEEEEEEE--CCeeEEEE
Confidence 3569999999999999999999998431110 111 11111222222222 33568899
Q ss_pred ecCCccccccc-----------ccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccc
Q psy15725 91 DTAGQERFRSL-----------IPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSF 159 (355)
Q Consensus 91 D~~g~~~~~~~-----------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
||||....... ...+++.+|++++|+|++++.+.+... +...+..
T Consensus 227 DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~----------------------- 282 (435)
T PRK00093 227 DTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLR-IAGLALE----------------------- 282 (435)
T ss_pred ECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH-----------------------
Confidence 99996432221 123577899999999999987765543 2222221
Q ss_pred cccCccccCccccccccccCCCccEEEEEeecCCCCcccce---ehhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725 160 HHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV---STEEGERKAKELNVMFIETSAKAGYNVKQVR 231 (355)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v---~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~ 231 (355)
.+.|+++|+||+|+.+.... .......+......+++.+|+.++.+++.++
T Consensus 283 ---------------------~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~ 336 (435)
T PRK00093 283 ---------------------AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLL 336 (435)
T ss_pred ---------------------cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHH
Confidence 26899999999998643211 1111111222234789999999999887643
No 248
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.50 E-value=6.5e-14 Score=114.48 Aligned_cols=110 Identities=20% Similarity=0.290 Sum_probs=88.8
Q ss_pred eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcccCCHH
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTE 307 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~ 307 (355)
.+.+.+||++|++.+...+..++..++++++|||++++.++.....|+..+.... ..+.|+++++||+|+.... ...
T Consensus 42 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~ 119 (158)
T cd00878 42 NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVS 119 (158)
T ss_pred CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHH
Confidence 5778999999999999999999999999999999999999888888887765533 2689999999999986433 122
Q ss_pred HHHHHH-----hhcCcEEEEecCCCCCCHHHHHHHHHH
Q psy15725 308 EGERKA-----KELNVMFIETSAKAGYNVKQLFRRVAA 340 (355)
Q Consensus 308 ~~~~~~-----~~~~~~~~~~SA~~~~gv~~l~~~l~~ 340 (355)
+..... ....++++++||++|.|++++|++|..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 120 ELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 222221 224478999999999999999999975
No 249
>KOG1707|consensus
Probab=99.50 E-value=2.5e-14 Score=132.88 Aligned_cols=162 Identities=25% Similarity=0.344 Sum_probs=110.5
Q ss_pred CCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEE
Q psy15725 6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV 85 (355)
Q Consensus 6 ~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 85 (355)
+.......++|+++|+.|||||||+.+++...+++.-++-+. .-++..++.+.. +
T Consensus 2 ~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~------------------~i~IPadvtPe~-------v 56 (625)
T KOG1707|consen 2 SDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP------------------RILIPADVTPEN-------V 56 (625)
T ss_pred CCccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCC------------------ccccCCccCcCc-------C
Confidence 345677889999999999999999999999887666544331 001111222221 3
Q ss_pred EEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCc
Q psy15725 86 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164 (355)
Q Consensus 86 ~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (355)
...++|++..+.-+......++.+|++.+||+++++.+.+.+. .|+..+++..
T Consensus 57 pt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~-------------------------- 110 (625)
T KOG1707|consen 57 PTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLF-------------------------- 110 (625)
T ss_pred ceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhccc--------------------------
Confidence 4789999876666666667789999999999999999999984 6999998642
Q ss_pred cccCccccccccccCCCccEEEEEeecCCCCcccceehhh-hhhhhhccC--eEEEEeeeeeccccceEE
Q psy15725 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEE-GERKAKELN--VMFIETSAKAGYNVKQVR 231 (355)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~-~~~~~~~~~--~~~~~~sa~~~~~v~~i~ 231 (355)
...-++|+|+||||+|.........+. ..-+...+. ..+++||+.+..++.+++
T Consensus 111 -------------~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~f 167 (625)
T KOG1707|consen 111 -------------GDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSELF 167 (625)
T ss_pred -------------CCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhh
Confidence 112489999999999985433221111 111212221 246777777777776654
No 250
>KOG4252|consensus
Probab=99.49 E-value=2.6e-15 Score=118.67 Aligned_cols=158 Identities=31% Similarity=0.476 Sum_probs=127.6
Q ss_pred CccEEEEEeecCCCCcccceehhhhhhhhhc---------cCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKE---------LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI 251 (355)
Q Consensus 181 ~~~piilv~nK~D~~~~~~v~~~~~~~~~~~---------~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~ 251 (355)
.-+.+++|||+.=-.. .....+++. +++.+.+ -....+.+.+...+||++|+++|..+...||
T Consensus 19 ~aiK~vivGng~VGKs------smiqryCkgifTkdykktIgvdfle--rqi~v~~Edvr~mlWdtagqeEfDaItkAyy 90 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKS------SMIQRYCKGIFTKDYKKTIGVDFLE--RQIKVLIEDVRSMLWDTAGQEEFDAITKAYY 90 (246)
T ss_pred hhEEEEEECCCccchH------HHHHHHhccccccccccccchhhhh--HHHHhhHHHHHHHHHHhccchhHHHHHHHHh
Confidence 4688999999875422 122233322 2222222 1223445566778899999999999999999
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725 252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 331 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv 331 (355)
+++.+.++||+.+|..+|+...+|.+.+.... ..+|.++|-||+|+.+...+...+...+++.++++++.+|+++..||
T Consensus 91 rgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV 169 (246)
T KOG4252|consen 91 RGAQASVLVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNV 169 (246)
T ss_pred ccccceEEEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 99999999999999999999999999997766 78999999999999988889999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCC
Q psy15725 332 KQLFRRVAAALPGMDS 347 (355)
Q Consensus 332 ~~l~~~l~~~i~~~~~ 347 (355)
.+.|.+|+.++....+
T Consensus 170 ~~vF~YLaeK~~q~~k 185 (246)
T KOG4252|consen 170 MHVFAYLAEKLTQQKK 185 (246)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988765443
No 251
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.48 E-value=1.4e-13 Score=118.68 Aligned_cols=105 Identities=20% Similarity=0.309 Sum_probs=63.2
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCcee--ee------ecccceeeecccCCCCCccccccceeeeeeeeeecCcEEE
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQA--TI------VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVR 86 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 86 (355)
+|+++|+.++|||||+.+|+.......... .+ .|.+.+-.....+....+... +.+.......+..+...
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~r--g~T~d~~~~~~~~~~~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERER--GVTIDVGLAKFETEKYR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhC--ccCeecceEEEeeCCeE
Confidence 589999999999999999987532111000 00 001100000001111122222 22333333344455678
Q ss_pred EEEEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725 87 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121 (355)
Q Consensus 87 ~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 121 (355)
+.+|||||+..|...+...+..+|++++|+|+++.
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~ 113 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKG 113 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCC
Confidence 99999999988877777778889999999999985
No 252
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.48 E-value=5.2e-13 Score=104.75 Aligned_cols=53 Identities=23% Similarity=0.258 Sum_probs=42.4
Q ss_pred CceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCCCCHHHHHHHHH
Q psy15725 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVA 339 (355)
Q Consensus 286 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~~gv~~l~~~l~ 339 (355)
++|+|-|.||+|+... .-..+.+..+.+..|+ .+|++||.+|+||++|.++|-
T Consensus 89 ~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 89 NKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred CCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 5799999999999722 2234566667777787 789999999999999999884
No 253
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.46 E-value=2.1e-13 Score=136.73 Aligned_cols=152 Identities=21% Similarity=0.221 Sum_probs=94.6
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
..+||+++|++|||||||+|+|++..... ...+ ++...+.....+.+++. .+.+||
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~---------------------v~~~-~gtT~d~~~~~~~~~~~--~~~liD 504 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAV---------------------VNDL-AGTTRDPVDEIVEIDGE--DWLFID 504 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccc---------------------cCCC-CCCCcCcceeEEEECCC--EEEEEE
Confidence 45899999999999999999999865211 1111 11112333333444444 467999
Q ss_pred cCCccc----------ccccc-cccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccccccc
Q psy15725 92 TAGQER----------FRSLI-PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFH 160 (355)
Q Consensus 92 ~~g~~~----------~~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
|||..+ |..++ ...++.+|++++|+|+++..+++....| ..+..
T Consensus 505 TaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~-~~~~~------------------------ 559 (712)
T PRK09518 505 TAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVM-SMAVD------------------------ 559 (712)
T ss_pred CCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHH-HHHHH------------------------
Confidence 999632 11111 2346789999999999998887766533 33321
Q ss_pred ccCccccCccccccccccCCCccEEEEEeecCCCCcccceehh--hhhh-hhhccCeEEEEeeeeeccccceEEE
Q psy15725 161 HANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE--EGER-KAKELNVMFIETSAKAGYNVKQVRL 232 (355)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~--~~~~-~~~~~~~~~~~~sa~~~~~v~~i~~ 232 (355)
.+.|+++|+||+|+.+....... .... +......++..+|+.++.+++.++.
T Consensus 560 --------------------~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~ 614 (712)
T PRK09518 560 --------------------AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAP 614 (712)
T ss_pred --------------------cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHH
Confidence 27899999999998643211100 0111 1111235678899999998876543
No 254
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.46 E-value=4.6e-13 Score=122.63 Aligned_cols=141 Identities=24% Similarity=0.313 Sum_probs=94.6
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+|++++|.||||||||+|+|++.. .++| ...+.+++ ++....+.++| +.+.+.||.
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d------~AIV-----------TdI~GTTR-----Dviee~i~i~G--~pv~l~DTA 273 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRD------RAIV-----------TDIAGTTR-----DVIEEDINLNG--IPVRLVDTA 273 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC------ceEe-----------cCCCCCcc-----ceEEEEEEECC--EEEEEEecC
Confidence 899999999999999999999944 2221 23333333 55666666666 679999999
Q ss_pred Cccccccc--------ccccccCccEEEEEEECCCcchh-hhHHHHHHHHhhhcCCceEEeeccccccccccccccccCc
Q psy15725 94 GQERFRSL--------IPSYIRDSTVAVVVYDITNANSF-HQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164 (355)
Q Consensus 94 g~~~~~~~--------~~~~~~~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (355)
|..+-... ....+.++|.+++|+|.+.+.+- +....+ .
T Consensus 274 GiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~--~------------------------------- 320 (454)
T COG0486 274 GIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE--L------------------------------- 320 (454)
T ss_pred CcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH--h-------------------------------
Confidence 98654432 22347799999999999996222 221111 1
Q ss_pred cccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceE
Q psy15725 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230 (355)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i 230 (355)
...+.|+++|.||.|+......... .-..+.++..+|+.++.+.+.+
T Consensus 321 --------------~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~Gl~~L 367 (454)
T COG0486 321 --------------LPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEGLDAL 367 (454)
T ss_pred --------------cccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccCHHHH
Confidence 1247999999999999764332111 1122336888999988777654
No 255
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=2e-12 Score=126.88 Aligned_cols=135 Identities=21% Similarity=0.201 Sum_probs=97.6
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCc-EEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR-TVRLQ 88 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~ 88 (355)
.....+|.++||-++|||||..+++...-.....+.+..+...+ +....+. ..|++.........++ ...++
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~-----D~~e~Eq--eRGITI~saa~s~~~~~~~~iN 79 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATM-----DWMEQEQ--ERGITITSAATTLFWKGDYRIN 79 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccC-----CCcHHHH--hcCCEEeeeeeEEEEcCceEEE
Confidence 44567999999999999999999998553333333332111111 1111122 3344445555555555 58999
Q ss_pred EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725 89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168 (355)
Q Consensus 89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (355)
++||||+-+|.......++-+|++++|+|+...-..+...-|....+
T Consensus 80 lIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~--------------------------------- 126 (697)
T COG0480 80 LIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK--------------------------------- 126 (697)
T ss_pred EeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh---------------------------------
Confidence 99999999999999999999999999999999877777777765543
Q ss_pred ccccccccccCCCccEEEEEeecCCCCc
Q psy15725 169 SKWIDDVRTERGSDVIIMLVGNKTDLSD 196 (355)
Q Consensus 169 ~~~~~~~~~~~~~~~piilv~nK~D~~~ 196 (355)
.++|.+++.||.|...
T Consensus 127 ------------~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 127 ------------YGVPRILFVNKMDRLG 142 (697)
T ss_pred ------------cCCCeEEEEECccccc
Confidence 4899999999999754
No 256
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.45 E-value=1e-12 Score=116.78 Aligned_cols=71 Identities=18% Similarity=0.316 Sum_probs=49.6
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
-.++|+++|++|+|||||+|+|++..+.....+. ........+|+........+..++..+.+.+||
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~-------------~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiD 69 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPP-------------DPAEEHIDKTVEIKSSKAEIEENGVKLKLTVID 69 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCC-------------CccccccCCceEEEEEEEEEEECCEEEEEEEEe
Confidence 3689999999999999999999987654331100 001112345666666666666677778999999
Q ss_pred cCCc
Q psy15725 92 TAGQ 95 (355)
Q Consensus 92 ~~g~ 95 (355)
|||.
T Consensus 70 TpGf 73 (276)
T cd01850 70 TPGF 73 (276)
T ss_pred cCCc
Confidence 9994
No 257
>PRK00049 elongation factor Tu; Reviewed
Probab=99.44 E-value=3.1e-12 Score=119.79 Aligned_cols=107 Identities=13% Similarity=0.089 Sum_probs=66.5
Q ss_pred CCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEE
Q psy15725 6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV 85 (355)
Q Consensus 6 ~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 85 (355)
.+.+.-+.++|+++|+.++|||||+++|++......- ........ .+....+..+.+..+ .....+..+..
T Consensus 5 ~~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~------~~~~~~~~-~d~~~~E~~rg~Ti~--~~~~~~~~~~~ 75 (396)
T PRK00049 5 KFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGG------AEAKAYDQ-IDKAPEEKARGITIN--TAHVEYETEKR 75 (396)
T ss_pred hccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccC------Ccccchhh-ccCChHHHhcCeEEe--eeEEEEcCCCe
Confidence 4566778899999999999999999999973211000 00000000 011112222333333 33344444556
Q ss_pred EEEEEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725 86 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121 (355)
Q Consensus 86 ~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 121 (355)
++.++||||+.+|.......+..+|++++|+|+.+.
T Consensus 76 ~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g 111 (396)
T PRK00049 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG 111 (396)
T ss_pred EEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC
Confidence 789999999987776666667788888888887663
No 258
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.44 E-value=1.6e-12 Score=124.19 Aligned_cols=86 Identities=23% Similarity=0.195 Sum_probs=64.3
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725 254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333 (355)
Q Consensus 254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~ 333 (355)
.|+++-|+|+++-+.- +. ..-.+.+ -++|+++++|+.|....+.+. -+...+.+..|+|++++||++|.|+++
T Consensus 82 ~D~ivnVvDAtnLeRn--Ly-ltlQLlE---~g~p~ilaLNm~D~A~~~Gi~-ID~~~L~~~LGvPVv~tvA~~g~G~~~ 154 (653)
T COG0370 82 PDLIVNVVDATNLERN--LY-LTLQLLE---LGIPMILALNMIDEAKKRGIR-IDIEKLSKLLGVPVVPTVAKRGEGLEE 154 (653)
T ss_pred CCEEEEEcccchHHHH--HH-HHHHHHH---cCCCeEEEeccHhhHHhcCCc-ccHHHHHHHhCCCEEEEEeecCCCHHH
Confidence 5788888888865431 11 1223334 589999999999986555443 234567778899999999999999999
Q ss_pred HHHHHHHHcCCCC
Q psy15725 334 LFRRVAAALPGMD 346 (355)
Q Consensus 334 l~~~l~~~i~~~~ 346 (355)
+++.+.+..++..
T Consensus 155 l~~~i~~~~~~~~ 167 (653)
T COG0370 155 LKRAIIELAESKT 167 (653)
T ss_pred HHHHHHHhccccc
Confidence 9999998777655
No 259
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.43 E-value=6.7e-13 Score=123.27 Aligned_cols=58 Identities=22% Similarity=0.287 Sum_probs=42.5
Q ss_pred CCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH-HHHHHHHHcCCCC
Q psy15725 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ-LFRRVAAALPGMD 346 (355)
Q Consensus 285 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~-l~~~l~~~i~~~~ 346 (355)
..+|+++|+||.|+...+. ....+.+..+..++++||+.+.|+++ +++.+.+++|...
T Consensus 216 t~KPvI~VlNK~D~~~~~~----~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p 274 (396)
T PRK09602 216 ISKPMVIAANKADLPPAEE----NIERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGDS 274 (396)
T ss_pred cCCCEEEEEEchhcccchH----HHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCCC
Confidence 4699999999999753221 11222222345799999999999999 8999999888654
No 260
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.43 E-value=9.2e-13 Score=123.49 Aligned_cols=107 Identities=15% Similarity=0.130 Sum_probs=68.8
Q ss_pred CCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEE
Q psy15725 6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV 85 (355)
Q Consensus 6 ~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 85 (355)
.+.+.-+.++|+++|+.++|||||+++|++..... |+..+..-...+....+..+.+..+ .....++.+..
T Consensus 5 ~~~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~-------g~~~~~~~~~~d~~~~E~~rG~Ti~--~~~~~~~~~~~ 75 (394)
T TIGR00485 5 KFERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKE-------GGAAARAYDQIDNAPEEKARGITIN--TAHVEYETENR 75 (394)
T ss_pred hhcCCCceEEEEEEeecCCCHHHHHHHHHhhHHHh-------hcccccccccccCCHHHHhcCccee--eEEEEEcCCCE
Confidence 45566778999999999999999999998531100 0000000000111222222333333 33344555566
Q ss_pred EEEEEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725 86 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121 (355)
Q Consensus 86 ~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 121 (355)
.+.+|||||+++|..........+|++++|+|+.+.
T Consensus 76 ~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g 111 (394)
T TIGR00485 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDG 111 (394)
T ss_pred EEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 899999999999877666667788999999999884
No 261
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.42 E-value=4.9e-13 Score=110.03 Aligned_cols=142 Identities=22% Similarity=0.340 Sum_probs=83.4
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 94 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 94 (355)
.|+++|++|+|||||+++++++.+..... ++.+.+........+. .+.+|||||
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~-----------------------~~~~~t~~~~~~~~~~---~~~~~D~~g 54 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTS-----------------------KTPGKTQLINFFNVND---KFRLVDLPG 54 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeec-----------------------CCCCcceeEEEEEccC---eEEEecCCC
Confidence 38999999999999999999644322221 1222222222222222 789999999
Q ss_pred ccc----------cccccccccc---CccEEEEEEECCCcchh--hhHHHHHHHHhhhcCCceEEeeccccccccccccc
Q psy15725 95 QER----------FRSLIPSYIR---DSTVAVVVYDITNANSF--HQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSF 159 (355)
Q Consensus 95 ~~~----------~~~~~~~~~~---~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
... +......++. ..+++++++|..+..+. ..+..|+...
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------------------------- 109 (170)
T cd01876 55 YGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL------------------------- 109 (170)
T ss_pred ccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-------------------------
Confidence 532 3333444443 45788999999875322 2233444332
Q ss_pred cccCccccCccccccccccCCCccEEEEEeecCCCCcccce--ehhhhhhhhh--ccCeEEEEeeeeeccccce
Q psy15725 160 HHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV--STEEGERKAK--ELNVMFIETSAKAGYNVKQ 229 (355)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v--~~~~~~~~~~--~~~~~~~~~sa~~~~~v~~ 229 (355)
..|+++++||+|+...... .......... ....+++.+|+.++.+...
T Consensus 110 ----------------------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~ 161 (170)
T cd01876 110 ----------------------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDE 161 (170)
T ss_pred ----------------------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHH
Confidence 5899999999998533211 1111222221 3345788888887766553
No 262
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.42 E-value=1.8e-11 Score=100.52 Aligned_cols=86 Identities=14% Similarity=0.070 Sum_probs=57.4
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHH---HHHHHhhcCcE--EEEecCCCCC
Q psy15725 255 TVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEE---GERKAKELNVM--FIETSAKAGY 329 (355)
Q Consensus 255 ~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~---~~~~~~~~~~~--~~~~SA~~~~ 329 (355)
.++++++|+..+....+. +.++-+.. .++|+++++||+|..+..+..... ...+.....+. ++..|+.++.
T Consensus 108 ~~vvlliD~r~~~~~~D~-em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~ 183 (200)
T COG0218 108 KGVVLLIDARHPPKDLDR-EMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKK 183 (200)
T ss_pred eEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEeccccc
Confidence 455677888766654332 44555555 689999999999987554432211 11222223333 8899999999
Q ss_pred CHHHHHHHHHHHcCC
Q psy15725 330 NVKQLFRRVAAALPG 344 (355)
Q Consensus 330 gv~~l~~~l~~~i~~ 344 (355)
|++++...|...+..
T Consensus 184 Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 184 GIDELKAKILEWLKE 198 (200)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999887754
No 263
>CHL00071 tufA elongation factor Tu
Probab=99.40 E-value=2.2e-12 Score=121.36 Aligned_cols=165 Identities=15% Similarity=0.103 Sum_probs=98.5
Q ss_pred CCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEE
Q psy15725 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRL 87 (355)
Q Consensus 8 ~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 87 (355)
..+-+.++|+++|++++|||||+++|++..-... +...+.... .+....+..+.+..+. ....+..+..++
T Consensus 7 ~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~------~~~~~~~~~-~d~~~~e~~rg~T~~~--~~~~~~~~~~~~ 77 (409)
T CHL00071 7 ERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKG------GAKAKKYDE-IDSAPEEKARGITINT--AHVEYETENRHY 77 (409)
T ss_pred cCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccc------ccccccccc-ccCChhhhcCCEeEEc--cEEEEccCCeEE
Confidence 3456779999999999999999999997421100 000000000 0111222223333332 233344455678
Q ss_pred EEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcccc
Q psy15725 88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ 167 (355)
Q Consensus 88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (355)
.++||||+.+|...+...+..+|++++|+|+.+...-+. ...+..+..
T Consensus 78 ~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~------------------------------- 125 (409)
T CHL00071 78 AHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQT-KEHILLAKQ------------------------------- 125 (409)
T ss_pred EEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHHHH-------------------------------
Confidence 999999999887777778889999999999987432221 222222222
Q ss_pred CccccccccccCCCccE-EEEEeecCCCCcccceeh---hhhhhhhhcc-----CeEEEEeeeeeccc
Q psy15725 168 TSKWIDDVRTERGSDVI-IMLVGNKTDLSDKRQVST---EEGERKAKEL-----NVMFIETSAKAGYN 226 (355)
Q Consensus 168 ~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~v~~---~~~~~~~~~~-----~~~~~~~sa~~~~~ 226 (355)
.++| ++++.||.|+.+...... .+...+.... ..++..+|+..+.+
T Consensus 126 -------------~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 126 -------------VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred -------------cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhccc
Confidence 2678 778999999865322111 1233333322 26788888887764
No 264
>PLN03127 Elongation factor Tu; Provisional
Probab=99.40 E-value=6.5e-12 Score=118.80 Aligned_cols=103 Identities=15% Similarity=0.123 Sum_probs=63.0
Q ss_pred CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeec-ccCCCCCccccccceeeeeeeeeecCcEEEE
Q psy15725 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRF-MYDSFDNTYQATIGIDFLSKTMYLEDRTVRL 87 (355)
Q Consensus 9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 87 (355)
..-+.++|+++|+.++|||||+++|.+.... .|... ...+ ..+....+..+.+..+. ....++....++
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~-------~g~~~-~~~~~~~D~~~~E~~rGiTi~~--~~~~~~~~~~~i 126 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAE-------EGKAK-AVAFDEIDKAPEEKARGITIAT--AHVEYETAKRHY 126 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHH-------hhccc-ceeeccccCChhHhhcCceeee--eEEEEcCCCeEE
Confidence 4557899999999999999999999742100 00000 0000 01222223333443343 333444555689
Q ss_pred EEEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725 88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121 (355)
Q Consensus 88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 121 (355)
.++||||+.+|-..+...+..+|++++|+|+.+.
T Consensus 127 ~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g 160 (447)
T PLN03127 127 AHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG 160 (447)
T ss_pred EEEECCCccchHHHHHHHHhhCCEEEEEEECCCC
Confidence 9999999987766555566678888888887653
No 265
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.40 E-value=2.2e-12 Score=117.21 Aligned_cols=119 Identities=18% Similarity=0.234 Sum_probs=96.9
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE 307 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~ 307 (355)
+.+.+.++||||+-.|.-..++.++.|.+.++++|.+.+..-+.+...+-.+.. ++-|+.|.||+||.+.+.-.
T Consensus 74 ~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Adper-- 147 (603)
T COG0481 74 ETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAADPER-- 147 (603)
T ss_pred CEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCCHHH--
Confidence 678899999999999988888889999999999999999888888777777764 78999999999997544321
Q ss_pred HHHHHHhhcCc---EEEEecCCCCCCHHHHHHHHHHHcCCCCCCCCCC
Q psy15725 308 EGERKAKELNV---MFIETSAKAGYNVKQLFRRVAAALPGMDSTENKP 352 (355)
Q Consensus 308 ~~~~~~~~~~~---~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~~~~~ 352 (355)
-..+.-.-.|+ ..+.+|||+|.||++++++|++.||.+....+.|
T Consensus 148 vk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~~~p 195 (603)
T COG0481 148 VKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDPDAP 195 (603)
T ss_pred HHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCCCCCCc
Confidence 11222333453 5899999999999999999999999998666544
No 266
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.39 E-value=1.9e-12 Score=123.46 Aligned_cols=175 Identities=19% Similarity=0.214 Sum_probs=101.1
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCc--eeee------eccc--ceeeecccCCCCCccccccceeeeeeeee
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTY--QATI------VGKT--SLITRFMYDSFDNTYQATIGIDFLSKTMY 79 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~--~~~~------~~~~--~~~~~~~~~~~~~~~~~t~~~~~~~~~~~ 79 (355)
.-..++|+++|+.++|||||+++|+...-.-.. ...+ .|.+ ++-..+..+....+....+.++.....
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~-- 101 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRY-- 101 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEE--
Confidence 345699999999999999999999985421110 0000 1111 111111112223333334444433333
Q ss_pred ecCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccc
Q psy15725 80 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSF 159 (355)
Q Consensus 80 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
+.....++.+|||||++.|...+...+..+|++++|+|+.+...-+....|. .+...
T Consensus 102 ~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~-l~~~l---------------------- 158 (474)
T PRK05124 102 FSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF-IATLL---------------------- 158 (474)
T ss_pred eccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH-HHHHh----------------------
Confidence 3445568999999999988776666789999999999998743221111111 11110
Q ss_pred cccCccccCccccccccccCCCccEEEEEeecCCCCcccceehh----hhhhhhhcc----CeEEEEeeeeeccccceE
Q psy15725 160 HHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE----EGERKAKEL----NVMFIETSAKAGYNVKQV 230 (355)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~----~~~~~~~~~----~~~~~~~sa~~~~~v~~i 230 (355)
...|+++++||+|+.+...-... +...+.... ..+++.+|+.++.|+...
T Consensus 159 ---------------------g~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 159 ---------------------GIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred ---------------------CCCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 12478999999998642211111 111222222 478999999999988754
No 267
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.38 E-value=1.8e-12 Score=121.76 Aligned_cols=170 Identities=22% Similarity=0.252 Sum_probs=99.3
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCc--eeee------eccc--ceeeecccCCCCCccccccceeeeeeeeeecCc
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTY--QATI------VGKT--SLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 83 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~--~~~~------~~~~--~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 83 (355)
++|+++|+.++|||||+++|+...-.-.. ...+ .+.+ +|...+..+...++....+..+.... .+..+
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~--~~~~~ 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYR--YFSTD 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeE--EEccC
Confidence 48999999999999999999875421110 0000 1111 12112222333333333443443333 34445
Q ss_pred EEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccC
Q psy15725 84 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHAN 163 (355)
Q Consensus 84 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (355)
..++.+|||||+++|...+...+..+|++++|+|+.....-+....|. .+...
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~~-------------------------- 131 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IASLL-------------------------- 131 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHHHc--------------------------
Confidence 568999999999999877777889999999999998753322222221 11110
Q ss_pred ccccCccccccccccCCCccEEEEEeecCCCCccccee----hhhhhhhhhcc---CeEEEEeeeeeccccce
Q psy15725 164 SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVS----TEEGERKAKEL---NVMFIETSAKAGYNVKQ 229 (355)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~----~~~~~~~~~~~---~~~~~~~sa~~~~~v~~ 229 (355)
...++++++||+|+.+...-. .++...+.... ..+++.+|+.++.|+..
T Consensus 132 -----------------~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 132 -----------------GIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred -----------------CCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 123688999999986422110 11111222222 35799999999988764
No 268
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.38 E-value=2.6e-12 Score=121.57 Aligned_cols=172 Identities=19% Similarity=0.223 Sum_probs=103.8
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCcee--ee------ecccceeeecccCCCCCccccccceeeeeeeeeec
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQA--TI------VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE 81 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 81 (355)
.-+.++|+++|+.++|||||+.+|+...-...... .+ .++..+-..+..+....+....+.++. ....+.
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~--~~~~~~ 81 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDI--ALWKFE 81 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEE--EEEEec
Confidence 34679999999999999999999987432110000 00 000001001111222223333333333 334455
Q ss_pred CcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhh-------hHHHHHHHHhhhcCCceEEeecccccccc
Q psy15725 82 DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH-------QTSKWIDDVRTERGSDVIIMLVGSIETNF 154 (355)
Q Consensus 82 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (355)
.....++++|+||+++|...+...+..+|++|+|+|+.+. .|+ ........+..
T Consensus 82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~------------------ 142 (447)
T PLN00043 82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT------------------ 142 (447)
T ss_pred CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH------------------
Confidence 6667899999999999999999999999999999999872 332 11111111111
Q ss_pred ccccccccCccccCccccccccccCCCcc-EEEEEeecCCCCcccc----e--ehhhhhhhhhccC-----eEEEEeeee
Q psy15725 155 THLSFHHANSFHQTSKWIDDVRTERGSDV-IIMLVGNKTDLSDKRQ----V--STEEGERKAKELN-----VMFIETSAK 222 (355)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-piilv~nK~D~~~~~~----v--~~~~~~~~~~~~~-----~~~~~~sa~ 222 (355)
.++ ++++++||+|+.+... . ..++...+....+ .+++++|+.
T Consensus 143 --------------------------~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~ 196 (447)
T PLN00043 143 --------------------------LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGF 196 (447)
T ss_pred --------------------------cCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecc
Confidence 256 5788999999752110 0 1233444444443 679999999
Q ss_pred eccccc
Q psy15725 223 AGYNVK 228 (355)
Q Consensus 223 ~~~~v~ 228 (355)
+|.|+.
T Consensus 197 ~G~ni~ 202 (447)
T PLN00043 197 EGDNMI 202 (447)
T ss_pred cccccc
Confidence 998864
No 269
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.38 E-value=6.5e-12 Score=118.59 Aligned_cols=111 Identities=8% Similarity=0.012 Sum_probs=60.2
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCC--CC-ccccccceeeee-----eeeee-
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF--DN-TYQATIGIDFLS-----KTMYL- 80 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~t~~~~~~~-----~~~~~- 80 (355)
.-++++|+++|+-..|||||+.+|++...+.....-.-|-|..+ .|..... .+ ...++.-..+.. .....
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~l-Gfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKL-GYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhc-cccccccccCcccCCcccccccCCCcccccccccc
Confidence 45679999999999999999999997433221111110111000 0000000 00 000000000000 00000
Q ss_pred ---cCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725 81 ---EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121 (355)
Q Consensus 81 ---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 121 (355)
......+.++|+||++.|-..+...+..+|++++|+|+.+.
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g 153 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANES 153 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 00023689999999999888777778889999999999863
No 270
>KOG0075|consensus
Probab=99.38 E-value=1e-12 Score=100.71 Aligned_cols=120 Identities=22% Similarity=0.367 Sum_probs=94.5
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC-CCceEEEEeeCCCCCCc---c
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDK---R 302 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~---~ 302 (355)
..++...+||.+|++.|+.+|..|+.+++++++|+|+.++..+.-....+..+....+ .++|+++++||.|+... .
T Consensus 62 kgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~ 141 (186)
T KOG0075|consen 62 KGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKI 141 (186)
T ss_pred cCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHH
Confidence 3467788999999999999999999999999999999998887777777777766555 89999999999998532 1
Q ss_pred cCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725 303 QVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346 (355)
Q Consensus 303 ~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~ 346 (355)
.+.........+...+-.|.+|+++..|++.+.+||+++....+
T Consensus 142 ~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk~~~ 185 (186)
T KOG0075|consen 142 ALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSKSLR 185 (186)
T ss_pred HHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhhhhc
Confidence 12122222223344467999999999999999999998865543
No 271
>PRK09866 hypothetical protein; Provisional
Probab=99.37 E-value=4.9e-12 Score=120.40 Aligned_cols=113 Identities=16% Similarity=0.201 Sum_probs=73.7
Q ss_pred ccceEEEEEEeCCCccc-----ccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725 226 NVKQVRLQLWDTAGQER-----FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 300 (355)
Q Consensus 226 ~v~~i~~~i~D~~g~~~-----~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 300 (355)
......+.++||||-.. ........+..+|+++||+|.+...+..+ ....+.+.... .+.|+++|.||+|+.+
T Consensus 226 l~~~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVNKIDl~d 303 (741)
T PRK09866 226 ESYPGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVNKFDQQD 303 (741)
T ss_pred ccccCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEEcccCCC
Confidence 33445678899999432 12233446899999999999987654433 22334444321 2359999999999854
Q ss_pred cccCCHHHHHHHHh----hc---CcEEEEecCCCCCCHHHHHHHHHH
Q psy15725 301 KRQVSTEEGERKAK----EL---NVMFIETSAKAGYNVKQLFRRVAA 340 (355)
Q Consensus 301 ~~~v~~~~~~~~~~----~~---~~~~~~~SA~~~~gv~~l~~~l~~ 340 (355)
...-..+....+.. .. ...+|++||++|.|++++++.|.+
T Consensus 304 reeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 304 RNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred cccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 22211233333321 11 237999999999999999999987
No 272
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.36 E-value=4.2e-12 Score=98.18 Aligned_cols=82 Identities=21% Similarity=0.275 Sum_probs=50.1
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 94 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 94 (355)
+|+++|.+|||||||+|+|++...... +..... |... ....+.+++ ..+.++||||
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~-----------------~~~~~~---T~~~--~~~~~~~~~--~~~~~vDtpG 56 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKV-----------------SNIPGT---TRDP--VYGQFEYNN--KKFILVDTPG 56 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEE-----------------SSSTTS---SSSE--EEEEEEETT--EEEEEEESSS
T ss_pred CEEEECCCCCCHHHHHHHHhccccccc-----------------cccccc---eeee--eeeeeeece--eeEEEEeCCC
Confidence 699999999999999999998432111 111111 1111 112222333 3567999999
Q ss_pred cccc---------cccccccccCccEEEEEEECCC
Q psy15725 95 QERF---------RSLIPSYIRDSTVAVVVYDITN 120 (355)
Q Consensus 95 ~~~~---------~~~~~~~~~~~d~ii~v~d~~~ 120 (355)
...- .......+..+|++++|+|.++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~ 91 (116)
T PF01926_consen 57 INDGESQDNDGKEIRKFLEQISKSDLIIYVVDASN 91 (116)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTS
T ss_pred CcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCC
Confidence 6321 1112233478999999999877
No 273
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.36 E-value=6.1e-12 Score=115.07 Aligned_cols=149 Identities=24% Similarity=0.264 Sum_probs=96.3
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
..+||+++|.||||||||+|++++.+- .+ .+..+.++...+.. .+. .+.-.+.++|
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR------~I-----------v~~~aGTTRD~I~~-----~~e--~~~~~~~liD 232 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEER------VI-----------VSDIAGTTRDSIDI-----EFE--RDGRKYVLID 232 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCce------EE-----------ecCCCCccccceee-----eEE--ECCeEEEEEE
Confidence 569999999999999999999999541 11 13344444433332 222 3335789999
Q ss_pred cCCccccccc-----------ccccccCccEEEEEEECCCcchhhhH--HHHHHHHhhhcCCceEEeecccccccccccc
Q psy15725 92 TAGQERFRSL-----------IPSYIRDSTVAVVVYDITNANSFHQT--SKWIDDVRTERGSDVIIMLVGSIETNFTHLS 158 (355)
Q Consensus 92 ~~g~~~~~~~-----------~~~~~~~~d~ii~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (355)
|.|..+-... ....+..+|.+++|+|+..+-+-+.. ..+..+
T Consensus 233 TAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~------------------------- 287 (444)
T COG1160 233 TAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEE------------------------- 287 (444)
T ss_pred CCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHH-------------------------
Confidence 9996432211 22345689999999999997554432 222222
Q ss_pred ccccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhh-----hhhccCeEEEEeeeeeccccceEE
Q psy15725 159 FHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGER-----KAKELNVMFIETSAKAGYNVKQVR 231 (355)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~-----~~~~~~~~~~~~sa~~~~~v~~i~ 231 (355)
.+.++++|.||+|+-.....+.++... +..--..+.+.+|+.++.++.+++
T Consensus 288 ----------------------~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~ 343 (444)
T COG1160 288 ----------------------AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLF 343 (444)
T ss_pred ----------------------cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHH
Confidence 388999999999986543223322221 112224689999999999877653
No 274
>COG2262 HflX GTPases [General function prediction only]
Probab=99.36 E-value=3.4e-11 Score=108.56 Aligned_cols=88 Identities=20% Similarity=0.246 Sum_probs=65.4
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHH
Q psy15725 253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 332 (355)
Q Consensus 253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~ 332 (355)
.+|+++.|+|.+++...+.+....+-+.+-...++|+|+|+||+|+..+... ......... ..+++||++|.|++
T Consensus 271 ~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~----~~~~~~~~~-~~v~iSA~~~~gl~ 345 (411)
T COG2262 271 EADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI----LAELERGSP-NPVFISAKTGEGLD 345 (411)
T ss_pred cCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh----hhhhhhcCC-CeEEEEeccCcCHH
Confidence 3788899999999876666666666666655567999999999998654431 111111112 58999999999999
Q ss_pred HHHHHHHHHcCCC
Q psy15725 333 QLFRRVAAALPGM 345 (355)
Q Consensus 333 ~l~~~l~~~i~~~ 345 (355)
+|++.|...+...
T Consensus 346 ~L~~~i~~~l~~~ 358 (411)
T COG2262 346 LLRERIIELLSGL 358 (411)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999998854
No 275
>PLN03126 Elongation factor Tu; Provisional
Probab=99.36 E-value=4.8e-12 Score=120.32 Aligned_cols=163 Identities=15% Similarity=0.092 Sum_probs=97.3
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
.-+.++|+++|+.++|||||+++|++....-. .....++ .++ +....+....+ +.......++.+...+.+
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~--~~~~~~~----~~~-D~~~~Er~rGi--Ti~~~~~~~~~~~~~i~l 148 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMG--GSAPKKY----DEI-DAAPEERARGI--TINTATVEYETENRHYAH 148 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhc--ccccccc----ccc-cCChhHHhCCe--eEEEEEEEEecCCcEEEE
Confidence 45679999999999999999999997321000 0000000 000 11122222233 333333333444568899
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS 169 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (355)
+|+||+.+|-..+...+..+|++++|+|+.+...-+.. .++..+..
T Consensus 149 iDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~-e~~~~~~~--------------------------------- 194 (478)
T PLN03126 149 VDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTK-EHILLAKQ--------------------------------- 194 (478)
T ss_pred EECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHH---------------------------------
Confidence 99999999988887888899999999999875433322 22222322
Q ss_pred cccccccccCCCccE-EEEEeecCCCCcccceeh---hhhhhhhhcc-----CeEEEEeeeeeccc
Q psy15725 170 KWIDDVRTERGSDVI-IMLVGNKTDLSDKRQVST---EEGERKAKEL-----NVMFIETSAKAGYN 226 (355)
Q Consensus 170 ~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~v~~---~~~~~~~~~~-----~~~~~~~sa~~~~~ 226 (355)
.++| +++++||+|+.+...... .+...+.... ..+++.+|+.++.+
T Consensus 195 -----------~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 195 -----------VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred -----------cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEcccccc
Confidence 2677 788999999865322111 1222333322 46788888877643
No 276
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.36 E-value=1.9e-12 Score=106.30 Aligned_cols=120 Identities=18% Similarity=0.303 Sum_probs=70.9
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~ 92 (355)
+-.|+++|+.|+|||+|+.+|..+...++ + ++- .+..++.+ -....-.+.++|+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T----~---------------tS~-e~n~~~~~------~~~~~~~~~lvD~ 56 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPT----V---------------TSM-ENNIAYNV------NNSKGKKLRLVDI 56 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B----------------------S-SEEEECCG------SSTCGTCECEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCe----e---------------ccc-cCCceEEe------ecCCCCEEEEEEC
Confidence 34799999999999999999999643222 1 000 11111110 1122336899999
Q ss_pred CCccccccccccc---ccCccEEEEEEECCC-cchhhhHHH-HHHHHhhhcCCceEEeeccccccccccccccccCcccc
Q psy15725 93 AGQERFRSLIPSY---IRDSTVAVVVYDITN-ANSFHQTSK-WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ 167 (355)
Q Consensus 93 ~g~~~~~~~~~~~---~~~~d~ii~v~d~~~-~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (355)
||+.+.+...... ...+-+||||+|.+. ...+..+.. ++.-+...
T Consensus 57 PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~------------------------------ 106 (181)
T PF09439_consen 57 PGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDT------------------------------ 106 (181)
T ss_dssp TT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHH------------------------------
T ss_pred CCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhh------------------------------
Confidence 9999887744444 778999999999985 334544443 44433321
Q ss_pred CccccccccccCCCccEEEEEeecCCCCcc
Q psy15725 168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDK 197 (355)
Q Consensus 168 ~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 197 (355)
......+|+++++||.|+...
T Consensus 107 ---------~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 107 ---------EVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp ---------HCCTT--EEEEEEE-TTSTT-
T ss_pred ---------hhccCCCCEEEEEeCcccccc
Confidence 122458999999999998653
No 277
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.34 E-value=5e-12 Score=110.56 Aligned_cols=117 Identities=21% Similarity=0.307 Sum_probs=80.7
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeee---eecCcEEEEEE
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTM---YLEDRTVRLQL 89 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~~~i 89 (355)
...|+|.|.||||||||++++++.+. .+ -.+.|.++.+ +++.+..++++
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~Akp------Ev----------------------A~YPFTTK~i~vGhfe~~~~R~Qv 219 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKP------EV----------------------APYPFTTKGIHVGHFERGYLRIQV 219 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCC------cc----------------------CCCCccccceeEeeeecCCceEEE
Confidence 35799999999999999999998442 11 1234444444 34456679999
Q ss_pred EecCCcc-----ccccc---ccccc-cCccEEEEEEECCC--cchhhhHHHHHHHHhhhcCCceEEeecccccccccccc
Q psy15725 90 WDTAGQE-----RFRSL---IPSYI-RDSTVAVVVYDITN--ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLS 158 (355)
Q Consensus 90 ~D~~g~~-----~~~~~---~~~~~-~~~d~ii~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (355)
+||||.= +.+.+ ....+ .-.++|+|+||.+. ..+.+....++++++.+
T Consensus 220 IDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~--------------------- 278 (346)
T COG1084 220 IDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL--------------------- 278 (346)
T ss_pred ecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---------------------
Confidence 9999961 11111 11112 23688999999998 46677777888888754
Q ss_pred ccccCccccCccccccccccCCCccEEEEEeecCCCCcccce
Q psy15725 159 FHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV 200 (355)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v 200 (355)
-..|+++|.||.|..+....
T Consensus 279 ----------------------f~~p~v~V~nK~D~~~~e~~ 298 (346)
T COG1084 279 ----------------------FKAPIVVVINKIDIADEEKL 298 (346)
T ss_pred ----------------------cCCCeEEEEecccccchhHH
Confidence 14899999999998754433
No 278
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=2e-11 Score=113.51 Aligned_cols=84 Identities=19% Similarity=0.294 Sum_probs=61.3
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec-CcEEEEEEEecC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTA 93 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~ 93 (355)
=|.++||-..||||||..+-..........-+ +..+|- -.+..+ ...-.+.|+|||
T Consensus 7 vVtimGHVDHGKTtLLD~IR~t~Va~~EaGGI-------------------TQhIGA----~~v~~~~~~~~~itFiDTP 63 (509)
T COG0532 7 VVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGI-------------------TQHIGA----YQVPLDVIKIPGITFIDTP 63 (509)
T ss_pred EEEEeCcccCCccchhhhHhcCccccccCCce-------------------eeEeee----EEEEeccCCCceEEEEcCC
Confidence 48899999999999999998865544433222 222221 112221 123478999999
Q ss_pred CcccccccccccccCccEEEEEEECCCc
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNA 121 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 121 (355)
|++.|..++.....-+|.+++|+|+++.
T Consensus 64 GHeAFt~mRaRGa~vtDIaILVVa~dDG 91 (509)
T COG0532 64 GHEAFTAMRARGASVTDIAILVVAADDG 91 (509)
T ss_pred cHHHHHHHHhcCCccccEEEEEEEccCC
Confidence 9999999999999999999999999884
No 279
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.34 E-value=6.2e-12 Score=106.57 Aligned_cols=100 Identities=21% Similarity=0.341 Sum_probs=82.8
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-------------------CCCce
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-------------------GSDVI 288 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-------------------~~~~p 288 (355)
..+.+.+||++|++.+..++..++.+++++|+|||+++..+++++..|+.++.... ..++|
T Consensus 52 ~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~P 131 (202)
T cd04102 52 KTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIP 131 (202)
T ss_pred cEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCce
Confidence 46889999999999999999999999999999999999999999999999986531 24799
Q ss_pred EEEEeeCCCCCCcccCCHHH----HHHHHhhcCcEEEEecCCC
Q psy15725 289 IMLVGNKTDLSDKRQVSTEE----GERKAKELNVMFIETSAKA 327 (355)
Q Consensus 289 iilv~nK~Dl~~~~~v~~~~----~~~~~~~~~~~~~~~SA~~ 327 (355)
+++|+||.|+...+.+.... ...++++.+.+.++.+++.
T Consensus 132 iilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~ 174 (202)
T cd04102 132 LLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTN 174 (202)
T ss_pred EEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCC
Confidence 99999999997665554443 3345677888888777773
No 280
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.33 E-value=5.1e-12 Score=102.81 Aligned_cols=110 Identities=25% Similarity=0.388 Sum_probs=85.8
Q ss_pred eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcccCCHH
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTE 307 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~ 307 (355)
.+.+.+||++|.+.++..+..++..++++++|+|+++..++.....|+..+.... ..++|+++|+||.|+.+.... .
T Consensus 43 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~ 120 (159)
T cd04159 43 NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV--D 120 (159)
T ss_pred CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH--H
Confidence 3678899999999999999999999999999999999888877777766654432 258999999999998644322 1
Q ss_pred HHH-HH----HhhcCcEEEEecCCCCCCHHHHHHHHHH
Q psy15725 308 EGE-RK----AKELNVMFIETSAKAGYNVKQLFRRVAA 340 (355)
Q Consensus 308 ~~~-~~----~~~~~~~~~~~SA~~~~gv~~l~~~l~~ 340 (355)
... .+ .....++++++||++|.|+++++++|.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 121 ELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 111 11 1123468999999999999999999975
No 281
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.32 E-value=8e-12 Score=123.98 Aligned_cols=174 Identities=22% Similarity=0.240 Sum_probs=99.7
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCce--------eeeeccc--ceeeecccCCCCCccccccceeeeeeeee
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQ--------ATIVGKT--SLITRFMYDSFDNTYQATIGIDFLSKTMY 79 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~--------~~~~~~~--~~~~~~~~~~~~~~~~~t~~~~~~~~~~~ 79 (355)
..+.++|+++|++++|||||+++|+...-.-... ....|.| .+-..+..+....+....+..+... ..
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~--~~ 98 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAY--RY 98 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeee--eE
Confidence 3456899999999999999999999854211100 0001110 1111111122222233333333333 33
Q ss_pred ecCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccc
Q psy15725 80 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSF 159 (355)
Q Consensus 80 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
+.....++.++||||+++|...+...+..+|++++|+|+.+...-+....+ ..+...
T Consensus 99 ~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~-~~~~~~---------------------- 155 (632)
T PRK05506 99 FATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHS-FIASLL---------------------- 155 (632)
T ss_pred EccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHH-HHHHHh----------------------
Confidence 444556788999999998877666778899999999999775322221111 111111
Q ss_pred cccCccccCccccccccccCCCccEEEEEeecCCCCcccc--eeh--hhhhhhhhccC---eEEEEeeeeeccccce
Q psy15725 160 HHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ--VST--EEGERKAKELN---VMFIETSAKAGYNVKQ 229 (355)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--v~~--~~~~~~~~~~~---~~~~~~sa~~~~~v~~ 229 (355)
...|+++++||+|+.+... ... .+...+....+ .+++.+|+.++.|+..
T Consensus 156 ---------------------~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 156 ---------------------GIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred ---------------------CCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 1357899999999863111 110 11112222322 4689999999998764
No 282
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.30 E-value=1.2e-11 Score=105.01 Aligned_cols=98 Identities=14% Similarity=0.205 Sum_probs=54.0
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~ 92 (355)
++||+++|++|||||||+|++++........+.. + ....+.. ...+.. .....+.+|||
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~------------~----~~~~t~~----~~~~~~-~~~~~l~l~Dt 59 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPT------------G----VVETTMK----RTPYPH-PKFPNVTLWDL 59 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCcccc------------C----ccccccC----ceeeec-CCCCCceEEeC
Confidence 4799999999999999999999855332111111 0 0000000 001110 11236899999
Q ss_pred CCcccccccc-----cccccCccEEEEEEECCCcchhhhH-HHHHHHHh
Q psy15725 93 AGQERFRSLI-----PSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVR 135 (355)
Q Consensus 93 ~g~~~~~~~~-----~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~ 135 (355)
||........ ...+.++|+++++.+. .|... ..|++.+.
T Consensus 60 pG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~----~~~~~d~~~~~~l~ 104 (197)
T cd04104 60 PGIGSTAFPPDDYLEEMKFSEYDFFIIISST----RFSSNDVKLAKAIQ 104 (197)
T ss_pred CCCCcccCCHHHHHHHhCccCcCEEEEEeCC----CCCHHHHHHHHHHH
Confidence 9975432222 2235678998887432 34333 34555554
No 283
>KOG1673|consensus
Probab=99.28 E-value=3.7e-11 Score=93.13 Aligned_cols=134 Identities=24% Similarity=0.458 Sum_probs=106.1
Q ss_pred hhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCc
Q psy15725 208 KAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287 (355)
Q Consensus 208 ~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 287 (355)
+....|+.+..-.. ....-.+...|||.+|++++..+.+-...++-+++|+||++.+.++.++.+|+...+......+
T Consensus 49 ~~q~~GvN~mdkt~--~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAi 126 (205)
T KOG1673|consen 49 YTQTLGVNFMDKTV--SIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAI 126 (205)
T ss_pred HHHHhCccceeeEE--EecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccc
Confidence 33444554443321 1233467889999999999999999999999999999999999999999999999887766667
Q ss_pred eEEEEeeCCCCC-----CcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725 288 IIMLVGNKTDLS-----DKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344 (355)
Q Consensus 288 piilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~ 344 (355)
|| +|++|-|+- +.++.....++.+++..+.+.|+||+.++.||+.+|+.+..++-.
T Consensus 127 Pi-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vlAklFn 187 (205)
T KOG1673|consen 127 PI-LVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVLAKLFN 187 (205)
T ss_pred eE-EeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHHHHHhC
Confidence 76 789999963 223333455677888888999999999999999999998887643
No 284
>KOG0077|consensus
Probab=99.27 E-value=4.6e-12 Score=99.36 Aligned_cols=118 Identities=24% Similarity=0.343 Sum_probs=89.6
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~ 92 (355)
.-|++++|-.|+|||||++-+..... ..+.||. .||-. . +.-.++.+..+|+
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTl-------------------HPTSE----~----l~Ig~m~ftt~DL 71 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTL-------------------HPTSE----E----LSIGGMTFTTFDL 71 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccccc-cccCCCc-------------------CCChH----H----heecCceEEEEcc
Confidence 45899999999999999998876443 2233332 22221 1 1123478999999
Q ss_pred CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725 93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI 172 (355)
Q Consensus 93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (355)
+|+..-++.|..++..+|++++.+|+-+.+.|...+..++.+...
T Consensus 72 GGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~----------------------------------- 116 (193)
T KOG0077|consen 72 GGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSD----------------------------------- 116 (193)
T ss_pred ccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhH-----------------------------------
Confidence 999999999999999999999999999999998877666655322
Q ss_pred ccccccCCCccEEEEEeecCCCCccc
Q psy15725 173 DDVRTERGSDVIIMLVGNKTDLSDKR 198 (355)
Q Consensus 173 ~~~~~~~~~~~piilv~nK~D~~~~~ 198 (355)
.....+|+++.+||.|.+...
T Consensus 117 -----e~la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 117 -----ESLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred -----HHHhcCcceeecccccCCCcc
Confidence 233589999999999987654
No 285
>KOG0074|consensus
Probab=99.27 E-value=1e-11 Score=94.62 Aligned_cols=115 Identities=21% Similarity=0.246 Sum_probs=93.1
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcccCCH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVST 306 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~ 306 (355)
..+.+.+||.+|+...+..|+.||.+.|++|+|+|++|...++++.+.+.++.+.. ...+|+.+..||+|+.....+.
T Consensus 60 g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~e- 138 (185)
T KOG0074|consen 60 GTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVE- 138 (185)
T ss_pred CcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchH-
Confidence 45789999999999999999999999999999999999999999888887775544 3789999999999986443331
Q ss_pred HHHH----HHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725 307 EEGE----RKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343 (355)
Q Consensus 307 ~~~~----~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~ 343 (355)
+.+. ...+..-|.+.+|||.+++|+....+|+.+-..
T Consensus 139 eia~klnl~~lrdRswhIq~csals~eg~~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 139 EIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQSNPE 179 (185)
T ss_pred HHHHhcchhhhhhceEEeeeCccccccCccCcchhhhcCCC
Confidence 1121 122334489999999999999999999987554
No 286
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.27 E-value=2.5e-11 Score=106.68 Aligned_cols=95 Identities=18% Similarity=0.158 Sum_probs=68.3
Q ss_pred cCCcEEEEEEeCCCcc---cHHHHHHHHHHHHhhcC--CCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEE-ecC
Q psy15725 252 RDSTVAVVVYDITNAN---SFHQTSKWIDDVRTERG--SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIE-TSA 325 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~---s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~-~SA 325 (355)
..+.+.++++|++... ..++......++..+.. .++|.++|+||+|+...++........+.+..++..+. +||
T Consensus 236 ERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa 315 (369)
T COG0536 236 ERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISA 315 (369)
T ss_pred HhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeeh
Confidence 3466677788876544 35555566666655543 78999999999997655444445555566666664333 999
Q ss_pred CCCCCHHHHHHHHHHHcCCCC
Q psy15725 326 KAGYNVKQLFRRVAAALPGMD 346 (355)
Q Consensus 326 ~~~~gv~~l~~~l~~~i~~~~ 346 (355)
.+++|+++++..+.+.+...+
T Consensus 316 ~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 316 LTREGLDELLRALAELLEETK 336 (369)
T ss_pred hcccCHHHHHHHHHHHHHHhh
Confidence 999999999999999988775
No 287
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.26 E-value=1.6e-11 Score=107.34 Aligned_cols=97 Identities=20% Similarity=0.256 Sum_probs=79.4
Q ss_pred ccccccccccccCCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcE
Q psy15725 241 ERFRSLIPSYIRDSTVAVVVYDITNAN-SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM 319 (355)
Q Consensus 241 ~~~~~~~~~~~~~~~~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~ 319 (355)
+++..+.+.+++++|.+++|+|++++. ++..+..|+..+.. .++|+++|+||+||.+.+.+..+....+ +..+.+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence 567778888999999999999999877 88899999987755 6899999999999975544433334334 347789
Q ss_pred EEEecCCCCCCHHHHHHHHHHH
Q psy15725 320 FIETSAKAGYNVKQLFRRVAAA 341 (355)
Q Consensus 320 ~~~~SA~~~~gv~~l~~~l~~~ 341 (355)
++++||++|.||+++|+.+.+.
T Consensus 100 v~~~SAktg~gi~eLf~~l~~~ 121 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQNR 121 (245)
T ss_pred EEEEecCCchhHHHHHhhhcCC
Confidence 9999999999999999988754
No 288
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=4.3e-11 Score=107.84 Aligned_cols=111 Identities=23% Similarity=0.381 Sum_probs=83.2
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCC--CCC------ceeeeecccceeeecccCCCCCccccccceeeeeeeeeec
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSF--DNT------YQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE 81 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~--~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 81 (355)
..+.++++++|+.++|||||+-||+.+.- +.. ....-.|+.+|.-.+..+...++....+.++.....+..+
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 45789999999999999999999998642 110 0111256666666666666666655555555555555444
Q ss_pred CcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcc
Q psy15725 82 DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122 (355)
Q Consensus 82 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 122 (355)
...+.++|+||+.+|-..+.....++|++|+|+|+++.+
T Consensus 84 --k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~e 122 (428)
T COG5256 84 --KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGE 122 (428)
T ss_pred --CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCc
Confidence 357999999999999999999999999999999999863
No 289
>KOG1191|consensus
Probab=99.26 E-value=5.5e-11 Score=109.00 Aligned_cols=83 Identities=24% Similarity=0.356 Sum_probs=56.1
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
++|+++|+||||||||+|+|..... ++| +..+.++...+ ...+.++| ..+.+.||.
T Consensus 269 l~iaIvGrPNvGKSSLlNaL~~~dr------sIV-----------Spv~GTTRDai-----ea~v~~~G--~~v~L~DTA 324 (531)
T KOG1191|consen 269 LQIAIVGRPNVGKSSLLNALSREDR------SIV-----------SPVPGTTRDAI-----EAQVTVNG--VPVRLSDTA 324 (531)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCc------eEe-----------CCCCCcchhhh-----eeEeecCC--eEEEEEecc
Confidence 7899999999999999999999542 221 33444444333 34444445 678899999
Q ss_pred Cccccc-c--------cccccccCccEEEEEEECCC
Q psy15725 94 GQERFR-S--------LIPSYIRDSTVAVVVYDITN 120 (355)
Q Consensus 94 g~~~~~-~--------~~~~~~~~~d~ii~v~d~~~ 120 (355)
|..+-. . .....+..+|++++|+|+..
T Consensus 325 GiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~ 360 (531)
T KOG1191|consen 325 GIREESNDGIEALGIERARKRIERADVILLVVDAEE 360 (531)
T ss_pred ccccccCChhHHHhHHHHHHHHhhcCEEEEEecccc
Confidence 975511 1 12233568899999999843
No 290
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.26 E-value=1.3e-11 Score=98.97 Aligned_cols=98 Identities=18% Similarity=0.196 Sum_probs=73.5
Q ss_pred EEEeCCCc-----ccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725 233 QLWDTAGQ-----ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE 307 (355)
Q Consensus 233 ~i~D~~g~-----~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~ 307 (355)
.++|++|. ..++.+.. .+.++|++++|+|++++.++.. ..|...+ ..|+++|+||+|+.+ +....+
T Consensus 38 ~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~ 108 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIE 108 (142)
T ss_pred eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHH
Confidence 57999997 23444433 4789999999999999988755 2343321 349999999999864 334455
Q ss_pred HHHHHHhhcCc-EEEEecCCCCCCHHHHHHHHH
Q psy15725 308 EGERKAKELNV-MFIETSAKAGYNVKQLFRRVA 339 (355)
Q Consensus 308 ~~~~~~~~~~~-~~~~~SA~~~~gv~~l~~~l~ 339 (355)
+..++++..+. +++++||++|.|++++|++|.
T Consensus 109 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 109 RAKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred HHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 55666666665 899999999999999999985
No 291
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.26 E-value=1.4e-11 Score=123.61 Aligned_cols=107 Identities=21% Similarity=0.181 Sum_probs=70.9
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCC---ccccccceeeeeeeeeecCcEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN---TYQATIGIDFLSKTMYLEDRTVRL 87 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~ 87 (355)
....||+++|+.++|||||+++|+...-... ....+.+ . ...+.. ....|+...........++....+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~--~~~~~~~-~-----~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i 88 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMIS--EELAGQQ-L-----YLDFDEQEQERGITINAANVSMVHEYEGNEYLI 88 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCc--hhcCCce-e-----ecCCCHHHHhhcchhhcccceeEEeecCCceEE
Confidence 3457999999999999999999987421100 0010110 0 011111 122244433334344466778899
Q ss_pred EEEecCCcccccccccccccCccEEEEEEECCCcchhh
Q psy15725 88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 125 (355)
Q Consensus 88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~ 125 (355)
++|||||+.+|.......++.+|++++|+|+.+....+
T Consensus 89 ~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~ 126 (720)
T TIGR00490 89 NLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQ 126 (720)
T ss_pred EEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCcc
Confidence 99999999999888888999999999999998753333
No 292
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.26 E-value=3.6e-11 Score=113.93 Aligned_cols=111 Identities=19% Similarity=0.261 Sum_probs=70.2
Q ss_pred CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCcee--------eeecccceeeecccCCCCCccccccceeeeeeeeee
Q psy15725 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQA--------TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL 80 (355)
Q Consensus 9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 80 (355)
..-+.++|+++|+.++|||||+.+|+...-.-.... .-.++..+-..+..+....+....+..+ .....+
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid--~~~~~~ 80 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITID--IALWKF 80 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEE--eeeEEE
Confidence 345779999999999999999999987321100000 0001111000001122222223333333 333445
Q ss_pred cCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725 81 EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121 (355)
Q Consensus 81 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 121 (355)
..+...++++||||+.+|...+...+..+|++++|+|+.+.
T Consensus 81 ~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G 121 (446)
T PTZ00141 81 ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAG 121 (446)
T ss_pred ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCC
Confidence 56677899999999999988888889999999999999874
No 293
>KOG0096|consensus
Probab=99.25 E-value=1.9e-11 Score=98.15 Aligned_cols=130 Identities=28% Similarity=0.496 Sum_probs=106.7
Q ss_pred ccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEE
Q psy15725 211 ELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIM 290 (355)
Q Consensus 211 ~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 290 (355)
..++...++...+..+ .+.+..||+.|++.+..+..-+|-.+.+.|++||++...++..+..|...+..-. .++||+
T Consensus 42 t~Gv~~~pl~f~tn~g--~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv 118 (216)
T KOG0096|consen 42 TLGVEVHPLLFDTNRG--QIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIV 118 (216)
T ss_pred cceeEEeeeeeecccC--cEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHh-cCCCee
Confidence 3455566665555444 7899999999999999999999999999999999999999999999999987776 579999
Q ss_pred EEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 291 lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
+++||.|..+.. + ..+...+-+...+.++++||+.+.|.+.-|-|+++++-..
T Consensus 119 ~cGNKvDi~~r~-~-k~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl~G~ 171 (216)
T KOG0096|consen 119 LCGNKVDIKARK-V-KAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARKLTGD 171 (216)
T ss_pred eeccceeccccc-c-ccccceeeecccceeEEeecccccccccchHHHhhhhcCC
Confidence 999999986443 1 1222344455668999999999999999999999988654
No 294
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.24 E-value=4.1e-11 Score=98.22 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=75.0
Q ss_pred eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccC--CH
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV--ST 306 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v--~~ 306 (355)
...+.+|||+|++.+......++.++|++++|+|+++....+. ...+..+... ...|+++++||+|+.+.... ..
T Consensus 50 ~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~-~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~ 126 (164)
T cd04171 50 GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQT-REHLEILELL--GIKRGLVVLTKADLVDEDWLELVE 126 (164)
T ss_pred CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhH-HHHHHHHHHh--CCCcEEEEEECccccCHHHHHHHH
Confidence 3468899999999887766677889999999999987432221 1222222221 22499999999999644211 11
Q ss_pred HHHHHHHhh---cCcEEEEecCCCCCCHHHHHHHHHH
Q psy15725 307 EEGERKAKE---LNVMFIETSAKAGYNVKQLFRRVAA 340 (355)
Q Consensus 307 ~~~~~~~~~---~~~~~~~~SA~~~~gv~~l~~~l~~ 340 (355)
.+.....+. .+++++++||++|.|++++++.+.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 127 EEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 222233333 3579999999999999999999865
No 295
>PLN00023 GTP-binding protein; Provisional
Probab=99.24 E-value=4.1e-11 Score=106.82 Aligned_cols=90 Identities=19% Similarity=0.398 Sum_probs=78.0
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC------------CCceEEEEeeC
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG------------SDVIIMLVGNK 295 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piilv~nK 295 (355)
..+.+.|||++|++.|+.+++.++.+++++|+|||+++..+++++..|++.+..... .++|++||+||
T Consensus 81 k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK 160 (334)
T PLN00023 81 RDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNK 160 (334)
T ss_pred ceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEEC
Confidence 468899999999999999999999999999999999999999999999999976531 35899999999
Q ss_pred CCCCCcc---c---CCHHHHHHHHhhcC
Q psy15725 296 TDLSDKR---Q---VSTEEGERKAKELN 317 (355)
Q Consensus 296 ~Dl~~~~---~---v~~~~~~~~~~~~~ 317 (355)
+||...+ . +..+++..+++..+
T Consensus 161 ~DL~~~~~~r~~s~~~~e~a~~~A~~~g 188 (334)
T PLN00023 161 ADIAPKEGTRGSSGNLVDAARQWVEKQG 188 (334)
T ss_pred ccccccccccccccccHHHHHHHHHHcC
Confidence 9996543 2 35788888988877
No 296
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.23 E-value=5.2e-11 Score=102.19 Aligned_cols=120 Identities=18% Similarity=0.281 Sum_probs=74.0
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 94 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 94 (355)
||+++|+.+|||||+.+-+..+..+... ....+|+.++..... . ...+.+++||+||
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT--------------------~~L~~T~~ve~~~v~--~-~~~~~l~iwD~pG 57 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDT--------------------LRLEPTIDVEKSHVR--F-LSFLPLNIWDCPG 57 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGG--------------------GG-----SEEEEEEE--C-TTSCEEEEEEE-S
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhc--------------------cccCCcCCceEEEEe--c-CCCcEEEEEEcCC
Confidence 7999999999999998777663321110 011234433322221 1 3346899999999
Q ss_pred cccccc-----cccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725 95 QERFRS-----LIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS 169 (355)
Q Consensus 95 ~~~~~~-----~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (355)
+..+-. .+...++++.++|+|+|+...+..+.+.++..-+.++.
T Consensus 58 q~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~------------------------------- 106 (232)
T PF04670_consen 58 QDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALR------------------------------- 106 (232)
T ss_dssp SCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHH-------------------------------
T ss_pred ccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHH-------------------------------
Confidence 965433 46677899999999999996655555666555555431
Q ss_pred cccccccccCCCccEEEEEeecCCCCc
Q psy15725 170 KWIDDVRTERGSDVIIMLVGNKTDLSD 196 (355)
Q Consensus 170 ~~~~~~~~~~~~~~piilv~nK~D~~~ 196 (355)
...+++.+-+...|.|+..
T Consensus 107 --------~~sp~~~v~vfiHK~D~l~ 125 (232)
T PF04670_consen 107 --------QYSPNIKVFVFIHKMDLLS 125 (232)
T ss_dssp --------HHSTT-EEEEEEE-CCCS-
T ss_pred --------HhCCCCeEEEEEeecccCC
Confidence 2245889999999999854
No 297
>KOG0465|consensus
Probab=99.22 E-value=2.6e-11 Score=113.27 Aligned_cols=274 Identities=18% Similarity=0.157 Sum_probs=144.6
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+.-+|.++-+-.+||||+-+|++.-.--..+...+.++...+ +....+... |+..........++..+++++|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~m-----d~m~~er~r--gITiqSAAt~~~w~~~~iNiID 110 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATM-----DSMELERQR--GITIQSAATYFTWRDYRINIID 110 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceee-----ehHHHHHhc--CceeeeceeeeeeccceeEEec
Confidence 456899999999999999999987432222222222221111 111222222 3333344444455678999999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW 171 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (355)
|||+-+|.-.....++.-|+.++|+|+...-.-+...-|... ++
T Consensus 111 TPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~-~r----------------------------------- 154 (721)
T KOG0465|consen 111 TPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQM-KR----------------------------------- 154 (721)
T ss_pred CCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHH-Hh-----------------------------------
Confidence 999999999999999999999999999886555656666443 22
Q ss_pred cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeE--EEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725 172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM--FIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS 249 (355)
Q Consensus 172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~--~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~ 249 (355)
.++|.+..+||.|.....- .....++..+++.+ ++++..- .+..+.-+.|.... ..-
T Consensus 155 ---------y~vP~i~FiNKmDRmGa~~--~~~l~~i~~kl~~~~a~vqiPig----~e~~f~GvvDlv~~------kai 213 (721)
T KOG0465|consen 155 ---------YNVPRICFINKMDRMGASP--FRTLNQIRTKLNHKPAVVQIPIG----SESNFKGVVDLVNG------KAI 213 (721)
T ss_pred ---------cCCCeEEEEehhhhcCCCh--HHHHHHHHhhcCCchheeEcccc----ccccchhHHhhhhc------eEE
Confidence 3899999999999754321 11222222222211 1111111 11111111111100 001
Q ss_pred cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC---CCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCC
Q psy15725 250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG---SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 326 (355)
Q Consensus 250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~ 326 (355)
+..+.++-.+..+--.........+...++.+... +.+--..+.+| + .+.+.+.....+...++.+.|++..||.
T Consensus 214 ~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~-~-ps~~~l~~aIRr~Ti~r~fvPVl~GSAl 291 (721)
T KOG0465|consen 214 YWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEE-E-PSAQQLKAAIRRATIKRSFVPVLCGSAL 291 (721)
T ss_pred EEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccC-C-CCHHHHHHHHHHHHhhcceeeEEechhh
Confidence 11122222222221111111112222222222110 00000000000 0 1122222222233344556799999999
Q ss_pred CCCCHHHHHHHHHHHcCCCCCCCCC
Q psy15725 327 AGYNVKQLFRRVAAALPGMDSTENK 351 (355)
Q Consensus 327 ~~~gv~~l~~~l~~~i~~~~~~~~~ 351 (355)
+|.||+.++|++++++|++.+..+.
T Consensus 292 KNkGVQPlLDAVvdYLPsP~Ev~n~ 316 (721)
T KOG0465|consen 292 KNKGVQPLLDAVVDYLPSPSEVENY 316 (721)
T ss_pred cccCcchHHHHHHHhCCChhhhccc
Confidence 9999999999999999999876654
No 298
>KOG1489|consensus
Probab=99.21 E-value=5.6e-11 Score=103.20 Aligned_cols=149 Identities=21% Similarity=0.292 Sum_probs=99.3
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCC-CCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~ 92 (355)
..|.+||-||+|||||++++...+ |.+ .++ -.+..|+++ ++.+++. .++.+-|.
T Consensus 197 advGLVG~PNAGKSTLL~als~AK------pkV------------a~YaFTTL~P~iG------~v~yddf-~q~tVADi 251 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAK------PKV------------AHYAFTTLRPHIG------TVNYDDF-SQITVADI 251 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccC------Ccc------------cccceeeeccccc------eeecccc-ceeEeccC
Confidence 468899999999999999999854 222 111 122355555 2223332 34899999
Q ss_pred CCccc----cccccccc---ccCccEEEEEEECCCc---chhhhHHHHHHHHhhhcCCceEEeecccccccccccccccc
Q psy15725 93 AGQER----FRSLIPSY---IRDSTVAVVVYDITNA---NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHA 162 (355)
Q Consensus 93 ~g~~~----~~~~~~~~---~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (355)
||.-+ -+.+-..+ +..+++.+||+|++.. +-+++++.+..++..+.
T Consensus 252 PGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~ye------------------------ 307 (366)
T KOG1489|consen 252 PGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYE------------------------ 307 (366)
T ss_pred ccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHh------------------------
Confidence 99632 22333333 4579999999999998 77788877777776543
Q ss_pred CccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCe-EEEEeeeeeccccce
Q psy15725 163 NSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQ 229 (355)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~-~~~~~sa~~~~~v~~ 229 (355)
......|.++|+||.|++... .....++++.... .++.+||..+.+...
T Consensus 308 ---------------k~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~~egl~~ 357 (366)
T KOG1489|consen 308 ---------------KGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKSGEGLEE 357 (366)
T ss_pred ---------------hhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeeccccchHH
Confidence 334588999999999985211 1112455555554 489999998877654
No 299
>KOG3905|consensus
Probab=99.21 E-value=1.9e-10 Score=100.07 Aligned_cols=99 Identities=22% Similarity=0.392 Sum_probs=66.2
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec--CcEEEEEEE
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE--DRTVRLQLW 90 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~i~ 90 (355)
.-+|+|+|+.++|||||+.+|.+-. +..+..+..+....++-+ ....++.+|
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e--------------------------~~KkgsgLeY~yl~V~de~RDd~tr~~VW 105 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSE--------------------------TVKKGSGLEYLYLHVHDEDRDDLTRCNVW 105 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhccc--------------------------ccCCCCCcceEEEecccccchhhhhcceE
Confidence 4689999999999999999998722 223333333333333222 234578889
Q ss_pred ecCCcccccccccccccC----ccEEEEEEECCCcch-hhhHHHHHHHHhhh
Q psy15725 91 DTAGQERFRSLIPSYIRD----STVAVVVYDITNANS-FHQTSKWIDDVRTE 137 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~----~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~ 137 (355)
=+-|.-....+....+.. -..+|++.|++++.. ++.++.|..-+..+
T Consensus 106 iLDGd~~h~~LLk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~eh 157 (473)
T KOG3905|consen 106 ILDGDLYHKGLLKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLREH 157 (473)
T ss_pred EecCchhhhhHHhhcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHH
Confidence 888765555554444332 257899999999955 47889998877643
No 300
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.21 E-value=6.7e-11 Score=100.15 Aligned_cols=113 Identities=20% Similarity=0.256 Sum_probs=80.0
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccC-CH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV-ST 306 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v-~~ 306 (355)
....+.+||++|++.|...+..++..+|++++|+|+++... .....++..+.. .++|+++|+||+|+...+.. ..
T Consensus 63 ~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~-~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~ 138 (194)
T cd01891 63 KDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPM-PQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVV 138 (194)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCcc-HHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHH
Confidence 35678999999999999999999999999999999987532 222333444433 57999999999998643211 12
Q ss_pred HHHHHHHh-------hcCcEEEEecCCCCCCH----------HHHHHHHHHHcCC
Q psy15725 307 EEGERKAK-------ELNVMFIETSAKAGYNV----------KQLFRRVAAALPG 344 (355)
Q Consensus 307 ~~~~~~~~-------~~~~~~~~~SA~~~~gv----------~~l~~~l~~~i~~ 344 (355)
++...+.+ ..+++++++||++|.|+ ++|++.|..++|.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (194)
T cd01891 139 DEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVPA 193 (194)
T ss_pred HHHHHHHHHhCCccccCccCEEEeehhccccccccccchhhHHHHHHHHHhcCCC
Confidence 22233321 23679999999999555 5677777777764
No 301
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.19 E-value=4.5e-12 Score=115.10 Aligned_cols=119 Identities=20% Similarity=0.276 Sum_probs=89.3
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCc----------ccHHHHHHHHHHHHhhcC-CCceEEEEeeCC
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA----------NSFHQTSKWIDDVRTERG-SDVIIMLVGNKT 296 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~----------~s~~~~~~~~~~i~~~~~-~~~piilv~nK~ 296 (355)
+.+.+.+||++|+...+..|..++.++++++||+|+++. ..+++....++.+..... .++|+++++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 467788999999999999999999999999999999874 445555556666655433 789999999999
Q ss_pred CCCCc--------------c--cCCHHHHHHHHhh----------cCcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725 297 DLSDK--------------R--QVSTEEGERKAKE----------LNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346 (355)
Q Consensus 297 Dl~~~--------------~--~v~~~~~~~~~~~----------~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~ 346 (355)
|+..+ . .-....+..+... ..+.+++++|..-.++..+|+.+.+.|....
T Consensus 239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 97311 0 1223344433221 3367889999999999999999999887544
No 302
>KOG0090|consensus
Probab=99.16 E-value=3.1e-10 Score=93.17 Aligned_cols=115 Identities=20% Similarity=0.296 Sum_probs=74.7
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
-.|+++|..+||||+|+-+|..+.+. +|+ . ...+....+..+.-...++|.|
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~----~Tv-------------------t-----Siepn~a~~r~gs~~~~LVD~P 90 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHR----GTV-------------------T-----SIEPNEATYRLGSENVTLVDLP 90 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCcc----Cee-------------------e-----eeccceeeEeecCcceEEEeCC
Confidence 46999999999999999999886432 222 0 1111111111122237899999
Q ss_pred Cccccccccccccc---CccEEEEEEECCCc-chhhhHHH-HHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725 94 GQERFRSLIPSYIR---DSTVAVVVYDITNA-NSFHQTSK-WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168 (355)
Q Consensus 94 g~~~~~~~~~~~~~---~~d~ii~v~d~~~~-~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (355)
|+++.+.-...++. .+-+++||+|...- .....+.. ++.-+..-
T Consensus 91 GH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~------------------------------- 139 (238)
T KOG0090|consen 91 GHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDS------------------------------- 139 (238)
T ss_pred CcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhh-------------------------------
Confidence 99988776666665 78999999998762 23344433 33333211
Q ss_pred ccccccccccCCCccEEEEEeecCCCC
Q psy15725 169 SKWIDDVRTERGSDVIIMLVGNKTDLS 195 (355)
Q Consensus 169 ~~~~~~~~~~~~~~~piilv~nK~D~~ 195 (355)
......+|+++.+||.|+.
T Consensus 140 --------~~~~~~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 140 --------RVKKNKPPVLIACNKQDLF 158 (238)
T ss_pred --------ccccCCCCEEEEecchhhh
Confidence 1135689999999999984
No 303
>KOG3883|consensus
Probab=99.13 E-value=1.2e-09 Score=84.70 Aligned_cols=136 Identities=23% Similarity=0.311 Sum_probs=111.3
Q ss_pred EEEeeeeeccccceEEEEEEeCCCcccc-cccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC-CCceEEEEe
Q psy15725 216 FIETSAKAGYNVKQVRLQLWDTAGQERF-RSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDVIIMLVG 293 (355)
Q Consensus 216 ~~~~sa~~~~~v~~i~~~i~D~~g~~~~-~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~ 293 (355)
++..|..++.+.. -.+.+.||.|-..+ ..+..+++.-+|++++|++..++++|+.+....+.|..... ..+||++++
T Consensus 47 iY~~svet~rgar-E~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLa 125 (198)
T KOG3883|consen 47 IYVASVETDRGAR-EQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLA 125 (198)
T ss_pred heeEeeecCCChh-heEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEe
Confidence 4445555655533 36789999996665 66788889999999999999999999987666666655443 579999999
Q ss_pred eCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCCCCCCCC
Q psy15725 294 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTENKP 352 (355)
Q Consensus 294 nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~~~~~ 352 (355)
||+|+.+++.+..+-+..+++...+..++++|+....+-|.|-+|...+-.+-.++..|
T Consensus 126 N~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~~rl~~pqskS~Fp 184 (198)
T KOG3883|consen 126 NKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPFTYLASRLHQPQSKSTFP 184 (198)
T ss_pred chhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHHHHHHHhccCCcccccCc
Confidence 99999999999999999999999999999999999999999999999887766555443
No 304
>KOG0393|consensus
Probab=99.13 E-value=3.6e-10 Score=93.31 Aligned_cols=85 Identities=36% Similarity=0.622 Sum_probs=74.6
Q ss_pred eEEEEeeeeeccc-cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCceEEE
Q psy15725 214 VMFIETSAKAGYN-VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIML 291 (355)
Q Consensus 214 ~~~~~~sa~~~~~-v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piil 291 (355)
..|...++..... ...+.+.+|||+|++.|..+++..|+.+|++++||++.++.+++++ .+|+.++..+. ++.|+||
T Consensus 36 TVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiL 114 (198)
T KOG0393|consen 36 TVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIIL 114 (198)
T ss_pred eEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEE
Confidence 3444555555553 6788899999999999999999999999999999999999999996 57999999988 8999999
Q ss_pred EeeCCCCC
Q psy15725 292 VGNKTDLS 299 (355)
Q Consensus 292 v~nK~Dl~ 299 (355)
||+|.||.
T Consensus 115 VGtk~DLr 122 (198)
T KOG0393|consen 115 VGTKADLR 122 (198)
T ss_pred EeehHHhh
Confidence 99999996
No 305
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.12 E-value=5.5e-12 Score=115.38 Aligned_cols=119 Identities=18% Similarity=0.250 Sum_probs=87.8
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCc----------ccHHHHHHHHHHHHhhc-CCCceEEEEeeCC
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA----------NSFHQTSKWIDDVRTER-GSDVIIMLVGNKT 296 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~piilv~nK~ 296 (355)
..+.+.+||.+|+..++..|..++.++++++||+|+++. ..+++....++.+.... ..++|+++++||.
T Consensus 182 ~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~ 261 (342)
T smart00275 182 KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKI 261 (342)
T ss_pred CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecH
Confidence 456678999999999999999999999999999999863 35555556666665543 3789999999999
Q ss_pred CCCCc--------------c-cCCHHHHHHHHhh-----------cCcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725 297 DLSDK--------------R-QVSTEEGERKAKE-----------LNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346 (355)
Q Consensus 297 Dl~~~--------------~-~v~~~~~~~~~~~-----------~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~ 346 (355)
|+... . .-....+..+... ..+..+.+||..-.++..+|+.+...|....
T Consensus 262 D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 262 DLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred HhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence 98321 0 0122233332211 2357789999999999999999988887543
No 306
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.12 E-value=4.3e-10 Score=114.80 Aligned_cols=35 Identities=37% Similarity=0.381 Sum_probs=32.2
Q ss_pred EEEEEecCCcccccccccccccCccEEEEEEECCC
Q psy15725 86 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120 (355)
Q Consensus 86 ~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 120 (355)
.+.||||||++.|..++...+..+|++++|+|+++
T Consensus 527 ~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~ 561 (1049)
T PRK14845 527 GLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINE 561 (1049)
T ss_pred cEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcc
Confidence 38999999999998888888889999999999987
No 307
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.12 E-value=1.7e-09 Score=97.90 Aligned_cols=103 Identities=12% Similarity=0.094 Sum_probs=61.4
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccC---CH
Q psy15725 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV---ST 306 (355)
Q Consensus 230 i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v---~~ 306 (355)
+.+.++||+|-..-... ....+|.++++.+......++.. ...+.+ ...++|.||+|+.+.... ..
T Consensus 149 ~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~---k~gi~E-----~aDIiVVNKaDl~~~~~a~~~~~ 217 (332)
T PRK09435 149 YDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGI---KKGIME-----LADLIVINKADGDNKTAARRAAA 217 (332)
T ss_pred CCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHH---Hhhhhh-----hhheEEeehhcccchhHHHHHHH
Confidence 44557777774422211 35569999998764444333322 222333 224899999998643211 11
Q ss_pred HHHHHHHh------hcCcEEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725 307 EEGERKAK------ELNVMFIETSAKAGYNVKQLFRRVAAALP 343 (355)
Q Consensus 307 ~~~~~~~~------~~~~~~~~~SA~~~~gv~~l~~~l~~~i~ 343 (355)
+....+.. .+..|++++||+++.||+++++.|.+..+
T Consensus 218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 11111111 11248999999999999999999999876
No 308
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.12 E-value=1.9e-10 Score=117.26 Aligned_cols=116 Identities=16% Similarity=0.199 Sum_probs=71.9
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee---------
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL--------- 80 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--------- 80 (355)
+.+-.+|+|+|+.++|||||+++|+...-.-. ....+.+. ++ +....+....+.+......+.+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~--~~~~g~~~----~~-D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~ 88 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIA--QEVAGDVR----MT-DTRADEAERGITIKSTGISLYYEMTDESLKD 88 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcc--cccCCcee----ec-cCcHHHHHhCCceecceeEEEeecccccccc
Confidence 34456999999999999999999997542111 01111111 11 1111112222222221122222
Q ss_pred -----cCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHH
Q psy15725 81 -----EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132 (355)
Q Consensus 81 -----~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~ 132 (355)
..+...++++||||+.+|...+...++.+|++|+|+|+.+.-..+....|..
T Consensus 89 ~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~ 145 (843)
T PLN00116 89 FKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ 145 (843)
T ss_pred cccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH
Confidence 2236789999999999999988889999999999999998655544444433
No 309
>PTZ00416 elongation factor 2; Provisional
Probab=99.11 E-value=2.2e-10 Score=116.61 Aligned_cols=113 Identities=19% Similarity=0.254 Sum_probs=70.1
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec--------C
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE--------D 82 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--------~ 82 (355)
.+-.+|+++|+.++|||||+++|+...-.-. ....|.+ +++ +....+....+.+......+.++ +
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~--~~~~g~~----~~~-D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~ 89 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIIS--SKNAGDA----RFT-DTRADEQERGITIKSTGISLYYEHDLEDGDDK 89 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcc--cccCCce----eec-ccchhhHhhcceeeccceEEEeecccccccCC
Confidence 3445999999999999999999998431110 0011111 111 12222222233222222222222 2
Q ss_pred cEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHH
Q psy15725 83 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130 (355)
Q Consensus 83 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~ 130 (355)
+...++++||||+.+|.......++.+|++|+|+|+.+.-..+...-|
T Consensus 90 ~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~ 137 (836)
T PTZ00416 90 QPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL 137 (836)
T ss_pred CceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH
Confidence 357899999999999988888889999999999999886444433333
No 310
>KOG0082|consensus
Probab=99.09 E-value=7.3e-12 Score=112.25 Aligned_cols=122 Identities=19% Similarity=0.294 Sum_probs=90.7
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcc----------cHHHHHHHHHHHHhhc-CCCceEEEEeeC
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN----------SFHQTSKWIDDVRTER-GSDVIIMLVGNK 295 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~----------s~~~~~~~~~~i~~~~-~~~~piilv~nK 295 (355)
.......++|.+|+...+..|.+++.++++++||++++... .+..-.+.++.+.+.. ..+.++||.+||
T Consensus 192 ~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK 271 (354)
T KOG0082|consen 192 IKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNK 271 (354)
T ss_pred eCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeec
Confidence 44578889999999999999999999999999999987533 2333345666665544 488999999999
Q ss_pred CCCCCc--------------cc-CCHHHHHHHHhh----------cCcEEEEecCCCCCCHHHHHHHHHHHcCCCCCC
Q psy15725 296 TDLSDK--------------RQ-VSTEEGERKAKE----------LNVMFIETSAKAGYNVKQLFRRVAAALPGMDST 348 (355)
Q Consensus 296 ~Dl~~~--------------~~-v~~~~~~~~~~~----------~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~ 348 (355)
.||-.+ .. ...+++..+.+. ..+.+..++|..-.+|+.+|+++.+.|...+.+
T Consensus 272 ~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nlk 349 (354)
T KOG0082|consen 272 KDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNLK 349 (354)
T ss_pred HHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHHH
Confidence 998321 11 233344443321 236788999999999999999999998766543
No 311
>KOG1145|consensus
Probab=99.09 E-value=4.2e-10 Score=104.29 Aligned_cols=143 Identities=20% Similarity=0.272 Sum_probs=96.3
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
--|-|+|+-..||||||..|.+........+-+ +..+| .-.+.++ +.-.+.|.|||
T Consensus 154 PVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGI-------------------TQhIG----AF~V~~p-~G~~iTFLDTP 209 (683)
T KOG1145|consen 154 PVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGI-------------------TQHIG----AFTVTLP-SGKSITFLDTP 209 (683)
T ss_pred CeEEEeecccCChhhHHHHHhhCceehhhcCCc-------------------cceec----eEEEecC-CCCEEEEecCC
Confidence 347789999999999999998855433322211 11222 1222233 22578999999
Q ss_pred CcccccccccccccCccEEEEEEECCCc---chhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNA---NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
|+..|..++......+|.+++|+.+.|. ++.+.+. .
T Consensus 210 GHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIk-------h---------------------------------- 248 (683)
T KOG1145|consen 210 GHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIK-------H---------------------------------- 248 (683)
T ss_pred cHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHH-------H----------------------------------
Confidence 9999999999999999999999999984 3443332 1
Q ss_pred ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhh------hcc--CeEEEEeeeeeccccceE
Q psy15725 171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKA------KEL--NVMFIETSAKAGYNVKQV 230 (355)
Q Consensus 171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~------~~~--~~~~~~~sa~~~~~v~~i 230 (355)
.+..++|+|+..||+|.+... ......++. +.+ .+.++++|+.++.|.+.+
T Consensus 249 -------Ak~A~VpiVvAinKiDkp~a~--pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L 307 (683)
T KOG1145|consen 249 -------AKSANVPIVVAINKIDKPGAN--PEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLL 307 (683)
T ss_pred -------HHhcCCCEEEEEeccCCCCCC--HHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHH
Confidence 122489999999999975421 111111111 222 368899999999988764
No 312
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.08 E-value=7.3e-10 Score=95.57 Aligned_cols=117 Identities=43% Similarity=0.609 Sum_probs=92.1
Q ss_pred eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCccc-HHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcc-----
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS-FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR----- 302 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~----- 302 (355)
.+.+.+||++|++.++.+++.++.+++++++|+|.++..+ .+....|...+......+.|+++++||+|+....
T Consensus 53 ~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~ 132 (219)
T COG1100 53 NIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEE 132 (219)
T ss_pred EEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHH
Confidence 6778999999999999999999999999999999999554 4446789999888765679999999999997543
Q ss_pred -------cCCHHHHHHHHhh---cCcEEEEecCC--CCCCHHHHHHHHHHHcCCC
Q psy15725 303 -------QVSTEEGERKAKE---LNVMFIETSAK--AGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 303 -------~v~~~~~~~~~~~---~~~~~~~~SA~--~~~gv~~l~~~l~~~i~~~ 345 (355)
............. ....++++||+ ++.||+++|..+++.+...
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~ 187 (219)
T COG1100 133 ILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEE 187 (219)
T ss_pred HHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHh
Confidence 2222222222211 12348999999 9999999999999998643
No 313
>PRK13768 GTPase; Provisional
Probab=99.06 E-value=4.6e-10 Score=98.71 Aligned_cols=114 Identities=22% Similarity=0.182 Sum_probs=71.9
Q ss_pred EEEEEeCCCcccc---ccccccccc---C--CcEEEEEEeCCCcccHHHHH--HHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725 231 RLQLWDTAGQERF---RSLIPSYIR---D--STVAVVVYDITNANSFHQTS--KWIDDVRTERGSDVIIMLVGNKTDLSD 300 (355)
Q Consensus 231 ~~~i~D~~g~~~~---~~~~~~~~~---~--~~~vi~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~nK~Dl~~ 300 (355)
...++|++|+... +..+..+++ . .+++++++|.+...+..+.. .|+..... ...++|+++|+||+|+.+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~-~~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQ-LRLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHH-HHcCCCEEEEEEhHhhcC
Confidence 4568999996553 333322222 2 78999999997655444432 22222221 125899999999999865
Q ss_pred cccCCHHHH-----------------------H---HHHhhcC--cEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 301 KRQVSTEEG-----------------------E---RKAKELN--VMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 301 ~~~v~~~~~-----------------------~---~~~~~~~--~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
......... . +..+..+ .+++++||+++.|+++++++|.+.++.-
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~ 249 (253)
T PRK13768 177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGG 249 (253)
T ss_pred chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCC
Confidence 432211000 0 1112233 4899999999999999999999998753
No 314
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.05 E-value=3.6e-09 Score=89.54 Aligned_cols=82 Identities=21% Similarity=0.136 Sum_probs=52.5
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHh--hcCcEEEEecCCCCCCH
Q psy15725 254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK--ELNVMFIETSAKAGYNV 331 (355)
Q Consensus 254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~--~~~~~~~~~SA~~~~gv 331 (355)
++.++.|+|+.+...... ..... -...-++++||+|+.....-......+..+ +.+.+++++||++|+|+
T Consensus 113 ~~~~i~vvD~~~~~~~~~--~~~~q------i~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi 184 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR--KGGPG------ITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGL 184 (199)
T ss_pred hCcEEEEEEcchhhhhhh--hhHhH------hhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCH
Confidence 466889999886554321 11111 123358999999997321111222222222 34479999999999999
Q ss_pred HHHHHHHHHHcC
Q psy15725 332 KQLFRRVAAALP 343 (355)
Q Consensus 332 ~~l~~~l~~~i~ 343 (355)
+++|++|.++..
T Consensus 185 ~el~~~i~~~~~ 196 (199)
T TIGR00101 185 DTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHHhhcC
Confidence 999999998764
No 315
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.05 E-value=7.5e-10 Score=86.26 Aligned_cols=93 Identities=27% Similarity=0.408 Sum_probs=65.7
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|+.|||||+|+.|+....+...+. + +|++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~--~--------------------~t~~----------------------- 35 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPT--V--------------------FTIG----------------------- 35 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCc--e--------------------ehhh-----------------------
Confidence 589999999999999999997754432211 0 2222
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID 173 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (355)
+........+.++.+++|++..++++++.+ |...+...
T Consensus 36 ----~~~~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~------------------------------------ 73 (124)
T smart00010 36 ----IDVYDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVG------------------------------------ 73 (124)
T ss_pred ----hhhccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhc------------------------------------
Confidence 222334557788999999999999998766 77666432
Q ss_pred cccccCCCccEEEEEeecCCCCccc
Q psy15725 174 DVRTERGSDVIIMLVGNKTDLSDKR 198 (355)
Q Consensus 174 ~~~~~~~~~~piilv~nK~D~~~~~ 198 (355)
...++|.++++||.|+....
T Consensus 74 -----~k~dl~~~~~~nk~dl~~~~ 93 (124)
T smart00010 74 -----NKSDLPILVGGNRDVLEEER 93 (124)
T ss_pred -----CCCCCcEEEEeechhhHhhC
Confidence 12368899999999985433
No 316
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.05 E-value=1.7e-09 Score=102.10 Aligned_cols=101 Identities=22% Similarity=0.392 Sum_probs=70.2
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccc--cceeeeeeeeeecCcEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT--IGIDFLSKTMYLEDRTVRLQ 88 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~~~ 88 (355)
.+.-.|+|+|..++|||||+.+|.+.. .+.++ .+|.|....-.......+++
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e--------------------------~~~~~~aLeYty~~v~d~~~dd~~rl~ 76 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIE--------------------------DPKKGLALEYTYLDVKDEDRDDLARLN 76 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccC--------------------------CCCCCcccceEEEeeccCcCCcCceee
Confidence 455789999999999999999986522 12223 33333332211112345789
Q ss_pred EEecCCcccccccccccccC----ccEEEEEEECCCcchh-hhHHHHHHHHhhh
Q psy15725 89 LWDTAGQERFRSLIPSYIRD----STVAVVVYDITNANSF-HQTSKWIDDVRTE 137 (355)
Q Consensus 89 i~D~~g~~~~~~~~~~~~~~----~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~ 137 (355)
+|-+.|...+..+....+.. --.||+|+|++.|..+ +.+..|+..++.+
T Consensus 77 vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~ 130 (472)
T PF05783_consen 77 VWELDGDPSHSDLLKFALTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVLREH 130 (472)
T ss_pred EEEcCCCcchHhHhcccCCcccccceEEEEEecCCChHHHHHHHHHHHHHHHHH
Confidence 99999877777766555442 3578999999999887 6789999888754
No 317
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.04 E-value=4.2e-10 Score=113.34 Aligned_cols=114 Identities=17% Similarity=0.127 Sum_probs=70.0
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeee--eeeecCcEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSK--TMYLEDRTVRLQ 88 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~ 88 (355)
.+-.+|+++|+.++|||||+.+|+...-.... ...|.+. ++ +....+....+.+..... .+..++....++
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~--~~~g~~~----~~-D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~ 90 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISE--ELAGEQL----AL-DFDEEEQARGITIKAANVSMVHEYEGKEYLIN 90 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcch--hhcCcce----ec-CccHHHHHhhhhhhccceEEEEEecCCcEEEE
Confidence 34568999999999999999999874321110 0111110 00 111111112222222212 222344568899
Q ss_pred EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHH
Q psy15725 89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131 (355)
Q Consensus 89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~ 131 (355)
++||||+.+|.......++.+|++++|+|+......+....|.
T Consensus 91 liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~ 133 (731)
T PRK07560 91 LIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR 133 (731)
T ss_pred EEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHH
Confidence 9999999999888888899999999999998754444334443
No 318
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.03 E-value=1.1e-08 Score=87.40 Aligned_cols=57 Identities=21% Similarity=0.229 Sum_probs=41.3
Q ss_pred CceEEEEeeCCCCCCcccCCHHHHHHHHhh--cCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKE--LNVMFIETSAKAGYNVKQLFRRVAAAL 342 (355)
Q Consensus 286 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~--~~~~~~~~SA~~~~gv~~l~~~l~~~i 342 (355)
+.|.++++||+|+.+.............+. .+++++++||++|.|++++|+++.++.
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 567899999999964322222233333333 337999999999999999999998764
No 319
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.03 E-value=4e-10 Score=96.49 Aligned_cols=96 Identities=18% Similarity=0.269 Sum_probs=62.4
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
-+.++|+++|..|+|||||+|+++.+...+.. .......++ ...... +++ -.+.+|
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~-----------------~vg~~t~~~---~~~~~~--~~~--~~l~lw 92 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVS-----------------KVGVGTDIT---TRLRLS--YDG--ENLVLW 92 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceee-----------------ecccCCCch---hhHHhh--ccc--cceEEe
Confidence 35699999999999999999999964432221 011111111 011111 222 468999
Q ss_pred ecCCccc-------ccccccccccCccEEEEEEECCCcchhhhHHHH
Q psy15725 91 DTAGQER-------FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130 (355)
Q Consensus 91 D~~g~~~-------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~ 130 (355)
|+||.++ +++....++.+.|.++++.++.++.---....|
T Consensus 93 DtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~ 139 (296)
T COG3596 93 DTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFL 139 (296)
T ss_pred cCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHH
Confidence 9999754 666677888899999999999997543333333
No 320
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.03 E-value=2.9e-09 Score=85.67 Aligned_cols=111 Identities=24% Similarity=0.320 Sum_probs=90.1
Q ss_pred eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHH
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEE 308 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~ 308 (355)
...+.++++||+++|+-+|..+.+++.+.|+++|.+.+..+ +..+.++.+.... -+|+++..||.||. .....+.
T Consensus 67 ~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~--~a~ppe~ 141 (187)
T COG2229 67 DTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLF--DALPPEK 141 (187)
T ss_pred cceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccC--CCCCHHH
Confidence 35788999999999999999999999999999999999988 4445555555432 29999999999995 4455556
Q ss_pred HHHHHhhc--CcEEEEecCCCCCCHHHHHHHHHHH-cCC
Q psy15725 309 GERKAKEL--NVMFIETSAKAGYNVKQLFRRVAAA-LPG 344 (355)
Q Consensus 309 ~~~~~~~~--~~~~~~~SA~~~~gv~~l~~~l~~~-i~~ 344 (355)
..++.... ..++++++|.+++++.+.++.+..+ .+.
T Consensus 142 i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~~~~~ 180 (187)
T COG2229 142 IREALKLELLSVPVIEIDATEGEGARDQLDVLLLKDLLG 180 (187)
T ss_pred HHHHHHhccCCCceeeeecccchhHHHHHHHHHhhcccC
Confidence 55555444 6899999999999999999999887 443
No 321
>KOG4423|consensus
Probab=99.02 E-value=5.7e-10 Score=89.33 Aligned_cols=120 Identities=33% Similarity=0.480 Sum_probs=99.1
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC----CCceEEEEeeCCCCCCcccCC
Q psy15725 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG----SDVIIMLVGNKTDLSDKRQVS 305 (355)
Q Consensus 230 i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~~~v~ 305 (355)
+.+.+||..|+++|..+.+.+|+.+++..+|||.++..+++...+|...+-+..+ .-.|+++..||||....-...
T Consensus 75 vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~ 154 (229)
T KOG4423|consen 75 VRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNE 154 (229)
T ss_pred HHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhh
Confidence 4567899999999999999999999999999999999999999999999877654 236799999999974222222
Q ss_pred -HHHHHHHHhhcCc-EEEEecCCCCCCHHHHHHHHHHHcCCCCCCC
Q psy15725 306 -TEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349 (355)
Q Consensus 306 -~~~~~~~~~~~~~-~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~~ 349 (355)
......+.++.|+ ..+++|||.+.|++|+-+.|++++.-...+.
T Consensus 155 ~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~lvnd~q~ 200 (229)
T KOG4423|consen 155 ATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKILVNDEQP 200 (229)
T ss_pred hHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHHHhhccCC
Confidence 2445566777776 7999999999999999999999998665443
No 322
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.01 E-value=1.4e-09 Score=99.12 Aligned_cols=103 Identities=17% Similarity=0.250 Sum_probs=78.2
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
-+|+|+.+-..|||||+.+|+.+.-.=.....+ -.|.|. ++......|++...+...+.++..+++++|||
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v------~ERvMD---SnDlEkERGITILaKnTav~~~~~~INIvDTP 76 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEV------AERVMD---SNDLEKERGITILAKNTAVNYNGTRINIVDTP 76 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccch------hhhhcC---ccchhhhcCcEEEeccceeecCCeEEEEecCC
Confidence 479999999999999999999965211111111 111111 12333456788888888889999999999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhh
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFH 125 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~ 125 (355)
|+-+|....+..++-+|++++++|+.+....+
T Consensus 77 GHADFGGEVERvl~MVDgvlLlVDA~EGpMPQ 108 (603)
T COG1217 77 GHADFGGEVERVLSMVDGVLLLVDASEGPMPQ 108 (603)
T ss_pred CcCCccchhhhhhhhcceEEEEEEcccCCCCc
Confidence 99999999999999999999999999865444
No 323
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.00 E-value=2.5e-09 Score=90.66 Aligned_cols=84 Identities=13% Similarity=0.149 Sum_probs=51.2
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
.+|+++|.+|||||||+|++++....... . .....|. ......... ....+.++|||
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~-----------------~--~~~~~T~--~~~~~~~~~--~~~~i~viDTP 57 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESK-----------------L--SASSVTK--TCQKESAVW--DGRRVNVIDTP 57 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccc-----------------c--CCCCccc--ccceeeEEE--CCeEEEEEECc
Confidence 47999999999999999999985421110 0 0000111 111111122 33579999999
Q ss_pred Ccccccc--------c---ccccccCccEEEEEEECCC
Q psy15725 94 GQERFRS--------L---IPSYIRDSTVAVVVYDITN 120 (355)
Q Consensus 94 g~~~~~~--------~---~~~~~~~~d~ii~v~d~~~ 120 (355)
|..+... + ......+.|++++|+++.+
T Consensus 58 G~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~ 95 (196)
T cd01852 58 GLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR 95 (196)
T ss_pred CCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC
Confidence 9754321 1 1122457899999999987
No 324
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.00 E-value=2.6e-09 Score=86.65 Aligned_cols=101 Identities=21% Similarity=0.179 Sum_probs=75.4
Q ss_pred eEEEEEEeCCCccccccc--------ccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725 229 QVRLQLWDTAGQERFRSL--------IPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 300 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~--------~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 300 (355)
...+.++|++|...+... ....+..++++++|+|++++.+......+.. ..++|+++|+||+|+.+
T Consensus 48 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 48 GIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLP 121 (157)
T ss_pred CEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCC
Confidence 456789999996544321 2245678999999999998877665433322 25899999999999875
Q ss_pred cccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725 301 KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342 (355)
Q Consensus 301 ~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i 342 (355)
.... .....+.+++++||+++.|+++++++|.+.+
T Consensus 122 ~~~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 122 DSEL-------LSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred cccc-------ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 4433 2334456899999999999999999998764
No 325
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.98 E-value=4e-09 Score=93.62 Aligned_cols=85 Identities=15% Similarity=0.281 Sum_probs=51.9
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCc-cccccceeeeeeeeeecCcEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT-YQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
...++|+++|.+||||||++|++++...... +.+... ..++ ...... ....+.+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~v-----------------s~f~s~t~~~~------~~~~~~--~G~~l~V 90 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATV-----------------SAFQSEGLRPM------MVSRTR--AGFTLNI 90 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccc-----------------cCCCCcceeEE------EEEEEE--CCeEEEE
Confidence 4678999999999999999999998553211 111111 1111 111122 3467999
Q ss_pred EecCCccccccc-------ccccc--cCccEEEEEEECCC
Q psy15725 90 WDTAGQERFRSL-------IPSYI--RDSTVAVVVYDITN 120 (355)
Q Consensus 90 ~D~~g~~~~~~~-------~~~~~--~~~d~ii~v~d~~~ 120 (355)
|||||..+.... ...++ ...|++++|..++.
T Consensus 91 IDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~ 130 (313)
T TIGR00991 91 IDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDA 130 (313)
T ss_pred EECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCc
Confidence 999997543211 11111 26899999966553
No 326
>KOG1532|consensus
Probab=98.97 E-value=8.6e-09 Score=87.96 Aligned_cols=88 Identities=20% Similarity=0.224 Sum_probs=58.0
Q ss_pred EEEEEEeC---CCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCC--------HHHHH--------------
Q psy15725 256 VAVVVYDI---TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVS--------TEEGE-------------- 310 (355)
Q Consensus 256 ~vi~v~d~---~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~--------~~~~~-------------- 310 (355)
++++++|. +++.+|-+-.-+-..+... ..+|.|+++||+|+.+..... .+++.
T Consensus 150 vv~YvvDt~rs~~p~tFMSNMlYAcSilyk--tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~S 227 (366)
T KOG1532|consen 150 VVVYVVDTPRSTSPTTFMSNMLYACSILYK--TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRS 227 (366)
T ss_pred EEEEEecCCcCCCchhHHHHHHHHHHHHHh--ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhh
Confidence 56777775 4455666555556666554 689999999999996542110 00000
Q ss_pred ---HHHhh-cCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 311 ---RKAKE-LNVMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 311 ---~~~~~-~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
.+-.. .++..+.+||.+|.|.+++|.++...+...
T Consensus 228 mSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 228 MSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred HHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 00111 336899999999999999999998877543
No 327
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.96 E-value=3.2e-09 Score=100.43 Aligned_cols=106 Identities=22% Similarity=0.201 Sum_probs=79.6
Q ss_pred ceEEEEEEeCCCccccccc--------ccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCC
Q psy15725 228 KQVRLQLWDTAGQERFRSL--------IPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS 299 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~--------~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 299 (355)
+...+.+|||+|...+... ...++..+|++++|+|.+++.+.+.. |+..+.. .++|+++|+||+|+.
T Consensus 249 ~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~ 323 (442)
T TIGR00450 249 NGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLK 323 (442)
T ss_pred CCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCC
Confidence 3456689999997654432 23577899999999999988877664 6665543 478999999999985
Q ss_pred CcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 300 DKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 300 ~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
.. ....+.+..+.+++++||++ .||+++|+.|.+.+...
T Consensus 324 ~~------~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 324 IN------SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred Cc------chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 33 11234455667899999998 69999999999988654
No 328
>PTZ00258 GTP-binding protein; Provisional
Probab=98.95 E-value=7.5e-09 Score=95.41 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=23.7
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDS 37 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~ 37 (355)
...++|++||.||||||||+|+|++..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~ 45 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQ 45 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCc
Confidence 345899999999999999999998754
No 329
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.95 E-value=4.1e-09 Score=103.25 Aligned_cols=113 Identities=19% Similarity=0.213 Sum_probs=83.3
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCce-EEEEeeCCCCCCcccCC--H
Q psy15725 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKRQVS--T 306 (355)
Q Consensus 230 i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~--~ 306 (355)
..+.+||+||++.|...+...+.++|++++|+|++++...+.. +.+..+.. .++| +++|+||+|+.+.+.+. .
T Consensus 50 ~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~-ehl~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~ 125 (581)
T TIGR00475 50 YRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTG-EHLAVLDL---LGIPHTIVVITKADRVNEEEIKRTE 125 (581)
T ss_pred EEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEECCCCCCHHHHHHHH
Confidence 6789999999999988888889999999999999985432222 22222322 4788 99999999997544321 2
Q ss_pred HHHHHHHhhc----CcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725 307 EEGERKAKEL----NVMFIETSAKAGYNVKQLFRRVAAALPGMD 346 (355)
Q Consensus 307 ~~~~~~~~~~----~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~ 346 (355)
.+...+.+.. +++++++||++|.|+++++++|...+....
T Consensus 126 ~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~ 169 (581)
T TIGR00475 126 MFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESLD 169 (581)
T ss_pred HHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCC
Confidence 2333444333 478999999999999999999988776543
No 330
>KOG1144|consensus
Probab=98.94 E-value=1.2e-09 Score=104.33 Aligned_cols=102 Identities=25% Similarity=0.268 Sum_probs=65.6
Q ss_pred CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee----cCcE
Q psy15725 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL----EDRT 84 (355)
Q Consensus 9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~----~~~~ 84 (355)
..++..=++|+|+-.+|||-|+..+.+.+......+.+ | +..-.++.|.-.+.-.+..+.- ..+.
T Consensus 471 ~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggi---t--------qqIgAt~fp~~ni~e~tk~~~~~~K~~~kv 539 (1064)
T KOG1144|consen 471 ENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGI---T--------QQIGATYFPAENIREKTKELKKDAKKRLKV 539 (1064)
T ss_pred hhcCCceEEEeecccccchHHHHHhhccccccccccce---e--------eeccccccchHHHHHHHHHHHhhhhhhcCC
Confidence 35666679999999999999999998866544433332 0 1111111111110000000000 1122
Q ss_pred EEEEEEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725 85 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121 (355)
Q Consensus 85 ~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 121 (355)
-.+.++||||++.|..++.....-||.+|+|+|+...
T Consensus 540 Pg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhG 576 (1064)
T KOG1144|consen 540 PGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHG 576 (1064)
T ss_pred CeeEEecCCCchhhhhhhhccccccceEEEEeehhcc
Confidence 3478999999999999999999999999999999874
No 331
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.94 E-value=8.3e-10 Score=93.62 Aligned_cols=158 Identities=23% Similarity=0.350 Sum_probs=122.0
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+|+|++|||||||+++|+++.+...+ .||.+.++....+.+++..+.+.+||||
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~-----------------------~pt~~~~~~~~~i~~~~~~~~l~i~Dt~ 57 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEY-----------------------IPTEHRRLYRPAVVLSGRVYDLHILDVP 57 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCccc-----------------------CCccccccceeEEEECCEEEEEEEEeCC
Confidence 58999999999999999999996654444 4454555555556677777899999999
Q ss_pred Cccccccc--------ccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcc
Q psy15725 94 GQERFRSL--------IPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165 (355)
Q Consensus 94 g~~~~~~~--------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (355)
|...+... ....++.+|++++|||++++++|+.+..|++.+.....
T Consensus 58 G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~-------------------------- 111 (198)
T cd04142 58 NMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRP-------------------------- 111 (198)
T ss_pred CcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc--------------------------
Confidence 97655322 33457899999999999999999999999988865421
Q ss_pred ccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhh-ccCeEEEEeeeeeccccceEEE
Q psy15725 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK-ELNVMFIETSAKAGYNVKQVRL 232 (355)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~-~~~~~~~~~sa~~~~~v~~i~~ 232 (355)
....++|+++|+||+|+...+.+..++...++. ..+++++++|+.++.+++.++.
T Consensus 112 ------------~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~ 167 (198)
T cd04142 112 ------------AGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFK 167 (198)
T ss_pred ------------cCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHH
Confidence 113479999999999997766666665655544 5578999999999999887653
No 332
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.94 E-value=6.9e-09 Score=90.71 Aligned_cols=86 Identities=21% Similarity=0.278 Sum_probs=51.5
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
...++|+++|.+|||||||+|++++...... +.+.. .|..... .... .....+.+|
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v-----------------~~~~~---~T~~~~~--~~~~--~~g~~i~vI 84 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAAT-----------------SAFQS---ETLRVRE--VSGT--VDGFKLNII 84 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCccc-----------------CCCCC---ceEEEEE--EEEE--ECCeEEEEE
Confidence 4568999999999999999999999543221 11111 1111111 1112 233578999
Q ss_pred ecCCcccccc---c-------cccccc--CccEEEEEEECCC
Q psy15725 91 DTAGQERFRS---L-------IPSYIR--DSTVAVVVYDITN 120 (355)
Q Consensus 91 D~~g~~~~~~---~-------~~~~~~--~~d~ii~v~d~~~ 120 (355)
||||..+... . ...++. ..|++++|..++.
T Consensus 85 DTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~ 126 (249)
T cd01853 85 DTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDM 126 (249)
T ss_pred ECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCC
Confidence 9999764421 0 112222 5788888876654
No 333
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=1.3e-08 Score=88.81 Aligned_cols=121 Identities=22% Similarity=0.242 Sum_probs=84.5
Q ss_pred EEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccC--CHHH
Q psy15725 231 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV--STEE 308 (355)
Q Consensus 231 ~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v--~~~~ 308 (355)
...+.|.+|++.....+-+-.+-.|+.++|++...+..--...+.+-.+.-. .-+-+|++-||+|+.+.++. ..++
T Consensus 87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi--gik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII--GIKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh--ccceEEEEecccceecHHHHHHHHHH
Confidence 4578999999988776666666778889999876543211122333333332 23559999999999765432 2344
Q ss_pred HHHHHhh---cCcEEEEecCCCCCCHHHHHHHHHHHcCCCCCCCCCCC
Q psy15725 309 GERKAKE---LNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTENKPP 353 (355)
Q Consensus 309 ~~~~~~~---~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~~~~~~ 353 (355)
..+|.+. .+.|++++||..+.|||.++++|.+.||.+...-.+++
T Consensus 165 Ik~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~~~p 212 (415)
T COG5257 165 IKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLDKPP 212 (415)
T ss_pred HHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCCCCc
Confidence 4555543 34699999999999999999999999998876665553
No 334
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=1.7e-08 Score=86.94 Aligned_cols=107 Identities=17% Similarity=0.156 Sum_probs=69.7
Q ss_pred CCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCcc-ccccceeeeeeeeeecCcE
Q psy15725 6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTY-QATIGIDFLSKTMYLEDRT 84 (355)
Q Consensus 6 ~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~ 84 (355)
.+...-+.+||..+|+-+.|||||..+++.--.... ......++..++.+ ....|++....-+.++...
T Consensus 5 kf~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~----------~~~~~~y~~id~aPeEk~rGITIntahveyet~~ 74 (394)
T COG0050 5 KFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKG----------GAEAKAYDQIDNAPEEKARGITINTAHVEYETAN 74 (394)
T ss_pred hhcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhc----------cccccchhhhccCchHhhcCceeccceeEEecCC
Confidence 345567889999999999999999988876211000 00000111122111 1133445555555555556
Q ss_pred EEEEEEecCCcccccccccccccCccEEEEEEECCCcc
Q psy15725 85 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122 (355)
Q Consensus 85 ~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 122 (355)
-++..+|+||+-+|-..+.....+.|+.|+|+.+.+..
T Consensus 75 rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGp 112 (394)
T COG0050 75 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGP 112 (394)
T ss_pred ceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCC
Confidence 67889999999988887777777889999998888743
No 335
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.88 E-value=1e-08 Score=97.44 Aligned_cols=113 Identities=19% Similarity=0.168 Sum_probs=75.5
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCceEEEEeeCCCCCCccc--
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDKRQ-- 303 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-- 303 (355)
.+...+.+||++|++.|.......+..+|++++|+|+++..+..... .+...+.... ...|+++++||+|+.+...
T Consensus 82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~~~ 160 (426)
T TIGR00483 82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL-GINQLIVAINKMDSVNYDEEE 160 (426)
T ss_pred cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc-CCCeEEEEEEChhccCccHHH
Confidence 34678899999999988766666678999999999999874321111 1111222222 2357999999999963211
Q ss_pred --CCHHHHHHHHhhcC-----cEEEEecCCCCCCHHH------------HHHHHHH
Q psy15725 304 --VSTEEGERKAKELN-----VMFIETSAKAGYNVKQ------------LFRRVAA 340 (355)
Q Consensus 304 --v~~~~~~~~~~~~~-----~~~~~~SA~~~~gv~~------------l~~~l~~ 340 (355)
....+...+++..+ ++++++||++|.||++ |+++|..
T Consensus 161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~ 216 (426)
T TIGR00483 161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDA 216 (426)
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHhc
Confidence 11223334444443 6899999999999986 7777754
No 336
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.87 E-value=1.3e-08 Score=83.99 Aligned_cols=51 Identities=18% Similarity=0.211 Sum_probs=37.2
Q ss_pred EEEEEEecCCccc----ccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 85 VRLQLWDTAGQER----FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 85 ~~~~i~D~~g~~~----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
..+.++||||... ...++..++..+|++++|.++....+-.....+.+...
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~ 155 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLD 155 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHT
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhc
Confidence 3578999999743 33567778899999999999999655555555555543
No 337
>KOG0464|consensus
Probab=98.85 E-value=3.3e-09 Score=95.20 Aligned_cols=116 Identities=20% Similarity=0.286 Sum_probs=83.6
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
..+--+|.|+.+-.+||||...|++.-.-.-...+.+ +...-+..|+ ......|+++....+.++++..++++
T Consensus 34 ~akirnigiiahidagktttterily~ag~~~s~g~v-ddgdtvtdfl------a~erergitiqsaav~fdwkg~rinl 106 (753)
T KOG0464|consen 34 IAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDV-DDGDTVTDFL------AIERERGITIQSAAVNFDWKGHRINL 106 (753)
T ss_pred hhhhhcceeEEEecCCCchhHHHHHHHhhhhhccccc-CCCchHHHHH------HHHHhcCceeeeeeeecccccceEee
Confidence 3455789999999999999999998722111111111 0111111111 11234577788888899999999999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHH
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~ 132 (355)
+||||+-+|+-..+.+++.-|+++.|||.+-.-.-+.+.-|..
T Consensus 107 idtpghvdf~leverclrvldgavav~dasagve~qtltvwrq 149 (753)
T KOG0464|consen 107 IDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ 149 (753)
T ss_pred ecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehh
Confidence 9999999999999999999999999999998766666777743
No 338
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.85 E-value=4e-08 Score=89.56 Aligned_cols=162 Identities=15% Similarity=0.135 Sum_probs=87.6
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceee---eeeeee-ecCcEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF---LSKTMY-LEDRTVR 86 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~ 86 (355)
.-++.|.|+|+.++|||||+|+|.+.-..+.....- .......=+.++....+.-|...-| ....+. .++-...
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~--~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~ 92 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEY--DKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFK 92 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchh--HHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCccc
Confidence 346899999999999999999999973222211000 0000000011223332222222222 222222 2344578
Q ss_pred EEEEecCCccc--------ccc-----------c----------cccccc-CccEEEEEE-ECC----Ccc-hhhhHHHH
Q psy15725 87 LQLWDTAGQER--------FRS-----------L----------IPSYIR-DSTVAVVVY-DIT----NAN-SFHQTSKW 130 (355)
Q Consensus 87 ~~i~D~~g~~~--------~~~-----------~----------~~~~~~-~~d~ii~v~-d~~----~~~-s~~~~~~~ 130 (355)
+.++||+|... ... . +...+. .+|..++|. |.+ .++ ..+.-..|
T Consensus 93 VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~ 172 (492)
T TIGR02836 93 VRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERV 172 (492)
T ss_pred EEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHH
Confidence 89999999531 111 0 122233 789999998 774 122 33445667
Q ss_pred HHHHhhhcCCceEEeeccccccccccccccccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhh
Q psy15725 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK 210 (355)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~ 210 (355)
+++++.. ++|+++|.||.|...+. +......+..
T Consensus 173 i~eLk~~--------------------------------------------~kPfiivlN~~dp~~~e--t~~l~~~l~e 206 (492)
T TIGR02836 173 IEELKEL--------------------------------------------NKPFIILLNSTHPYHPE--TEALRQELEE 206 (492)
T ss_pred HHHHHhc--------------------------------------------CCCEEEEEECcCCCCch--hHHHHHHHHH
Confidence 7777654 89999999999953222 2222234445
Q ss_pred ccCeEEEEee
Q psy15725 211 ELNVMFIETS 220 (355)
Q Consensus 211 ~~~~~~~~~s 220 (355)
++++++..++
T Consensus 207 ky~vpvl~v~ 216 (492)
T TIGR02836 207 KYDVPVLAMD 216 (492)
T ss_pred HhCCceEEEE
Confidence 5566544443
No 339
>KOG1145|consensus
Probab=98.84 E-value=1.8e-08 Score=93.62 Aligned_cols=155 Identities=15% Similarity=0.186 Sum_probs=105.2
Q ss_pred CCccEEEEEeecCCCCcccceehhhhhhhhh------ccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccC
Q psy15725 180 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAK------ELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRD 253 (355)
Q Consensus 180 ~~~~piilv~nK~D~~~~~~v~~~~~~~~~~------~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~ 253 (355)
.+..|++-++-..|.-.-.-++..+.-+.+. ..++.-+.++...| -+.+|.||||+..|..++..-...
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-----~~iTFLDTPGHaAF~aMRaRGA~v 224 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-----KSITFLDTPGHAAFSAMRARGANV 224 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-----CEEEEecCCcHHHHHHHHhccCcc
Confidence 4578999999999974322222211111111 12344555655533 467899999999999999999999
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCc--ccCCHHHHHH--HHhhcC--cEEEEecCCC
Q psy15725 254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK--RQVSTEEGER--KAKELN--VMFIETSAKA 327 (355)
Q Consensus 254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~--~~v~~~~~~~--~~~~~~--~~~~~~SA~~ 327 (355)
+|.+++|+..+|...-+. .+.|......+.|+|+..||+|.... +++..+.... ..+.+| ..++++||++
T Consensus 225 tDIvVLVVAadDGVmpQT----~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~ 300 (683)
T KOG1145|consen 225 TDIVVLVVAADDGVMPQT----LEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALT 300 (683)
T ss_pred ccEEEEEEEccCCccHhH----HHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeeccc
Confidence 999999999998865443 34444444479999999999997532 2222211111 122344 6899999999
Q ss_pred CCCHHHHHHHHHHHcC
Q psy15725 328 GYNVKQLFRRVAAALP 343 (355)
Q Consensus 328 ~~gv~~l~~~l~~~i~ 343 (355)
|.|++.|.++++-...
T Consensus 301 g~nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 301 GENLDLLEEAILLLAE 316 (683)
T ss_pred CCChHHHHHHHHHHHH
Confidence 9999999998876543
No 340
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.84 E-value=4.1e-10 Score=97.75 Aligned_cols=112 Identities=22% Similarity=0.196 Sum_probs=61.1
Q ss_pred EEEEEeCCCcccccccccccc--------cCCcEEEEEEeCCCcccHHH-HHHHHHHHHhhcCCCceEEEEeeCCCCCCc
Q psy15725 231 RLQLWDTAGQERFRSLIPSYI--------RDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSDVIIMLVGNKTDLSDK 301 (355)
Q Consensus 231 ~~~i~D~~g~~~~~~~~~~~~--------~~~~~vi~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 301 (355)
...++|||||.++-..|.... ...-++++++|+....+... +..++-.+......+.|.|.|.||+|+.++
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 567999999888776655443 55668888888765443222 233343333333358999999999999752
Q ss_pred c------------cC-------CHHHHHHHHh---hcC-c-EEEEecCCCCCCHHHHHHHHHHHc
Q psy15725 302 R------------QV-------STEEGERKAK---ELN-V-MFIETSAKAGYNVKQLFRRVAAAL 342 (355)
Q Consensus 302 ~------------~v-------~~~~~~~~~~---~~~-~-~~~~~SA~~~~gv~~l~~~l~~~i 342 (355)
. .. ......+++. ..+ . .+++.|+++++|+++++..|-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 1 00 0011111221 122 4 799999999999999999987754
No 341
>KOG1486|consensus
Probab=98.83 E-value=5e-07 Score=76.33 Aligned_cols=87 Identities=18% Similarity=0.270 Sum_probs=59.1
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeee---eeecCcEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKT---MYLEDRTVRL 87 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~~~~ 87 (355)
+-..+|+++|-|.||||||+..++..+ ....++.|.+.. ..+.++...+
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~----------------------------SeaA~yeFTTLtcIpGvi~y~ga~I 111 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTH----------------------------SEAASYEFTTLTCIPGVIHYNGANI 111 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcch----------------------------hhhhceeeeEEEeecceEEecCceE
Confidence 446799999999999999999988733 111122222222 2233445679
Q ss_pred EEEecCCccc-------ccccccccccCccEEEEEEECCCcchhh
Q psy15725 88 QLWDTAGQER-------FRSLIPSYIRDSTVAVVVYDITNANSFH 125 (355)
Q Consensus 88 ~i~D~~g~~~-------~~~~~~~~~~~~d~ii~v~d~~~~~s~~ 125 (355)
++.|+||.-+ -........+.+|.++.|.|++..+.-.
T Consensus 112 QllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e~qr 156 (364)
T KOG1486|consen 112 QLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSEDQR 156 (364)
T ss_pred EEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcchhHH
Confidence 9999999622 1224445678999999999999865554
No 342
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.83 E-value=4.4e-09 Score=84.58 Aligned_cols=103 Identities=21% Similarity=0.333 Sum_probs=68.9
Q ss_pred eEEEEEEeCCCcccccc------cccccc--cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725 229 QVRLQLWDTAGQERFRS------LIPSYI--RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 300 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~------~~~~~~--~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 300 (355)
.....++|+||-..... ....++ ...|+++.|+|.++. +.-......+.+ .++|+++++||+|...
T Consensus 46 ~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l---~r~l~l~~ql~e---~g~P~vvvlN~~D~a~ 119 (156)
T PF02421_consen 46 DQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNL---ERNLYLTLQLLE---LGIPVVVVLNKMDEAE 119 (156)
T ss_dssp TEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGH---HHHHHHHHHHHH---TTSSEEEEEETHHHHH
T ss_pred CceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCH---HHHHHHHHHHHH---cCCCEEEEEeCHHHHH
Confidence 35678999999443332 223333 689999999998863 222234444555 5899999999999864
Q ss_pred cccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHH
Q psy15725 301 KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338 (355)
Q Consensus 301 ~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l 338 (355)
.+.+.. ....+.+..++|++++||++++|+++++++|
T Consensus 120 ~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 120 RKGIEI-DAEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp HTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred HcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 443322 3456667789999999999999999999876
No 343
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.81 E-value=2.6e-08 Score=94.59 Aligned_cols=104 Identities=19% Similarity=0.171 Sum_probs=68.0
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCC-ceEEEEeeCCCCCCccc---
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD-VIIMLVGNKTDLSDKRQ--- 303 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~piilv~nK~Dl~~~~~--- 303 (355)
+...+.+|||+|++.|.......+..+|++++|+|+++.........+.-.+... .+ .|+++++||+|+.+...
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~--~~~~~iivviNK~Dl~~~~~~~~ 159 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART--LGINQLIVAINKMDAVNYDEKRY 159 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH--cCCCeEEEEEEccccccccHHHH
Confidence 4678899999999887665555578899999999998732222222222222222 24 46999999999864211
Q ss_pred -CCHHHHHHHHhhcC-----cEEEEecCCCCCCHHH
Q psy15725 304 -VSTEEGERKAKELN-----VMFIETSAKAGYNVKQ 333 (355)
Q Consensus 304 -v~~~~~~~~~~~~~-----~~~~~~SA~~~~gv~~ 333 (355)
...++...+.+..+ ++++++||++|.|+++
T Consensus 160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 11122333333333 5899999999999987
No 344
>KOG1490|consensus
Probab=98.81 E-value=8.3e-09 Score=94.92 Aligned_cols=150 Identities=20% Similarity=0.196 Sum_probs=97.3
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeee---eeecCcEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKT---MYLEDRTVRL 87 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~~~~ 87 (355)
+.+-.++++|.||||||||+|.++.....-. .+.|.++. .+++++..+|
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradvevq----------------------------pYaFTTksL~vGH~dykYlrw 217 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQ----------------------------PYAFTTKLLLVGHLDYKYLRW 217 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccccC----------------------------Ccccccchhhhhhhhhheeee
Confidence 3456899999999999999998877442211 12222222 2456778899
Q ss_pred EEEecCCcccccc----cccc-----cccCccEEEEEEECCC--cchhhhHHHHHHHHhhhcCCceEEeecccccccccc
Q psy15725 88 QLWDTAGQERFRS----LIPS-----YIRDSTVAVVVYDITN--ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTH 156 (355)
Q Consensus 88 ~i~D~~g~~~~~~----~~~~-----~~~~~d~ii~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (355)
+++||||.-+... ..+. ...--.+|+|+.|++. ..|.+..-.++..|+-+
T Consensus 218 QViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpL------------------- 278 (620)
T KOG1490|consen 218 QVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL------------------- 278 (620)
T ss_pred eecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHH-------------------
Confidence 9999999632211 1110 0111246899999998 56777766677777633
Q ss_pred ccccccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhh---hhhhccCeEEEEeeeeeccccceE
Q psy15725 157 LSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGE---RKAKELNVMFIETSAKAGYNVKQV 230 (355)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~---~~~~~~~~~~~~~sa~~~~~v~~i 230 (355)
..+.|+|+|+||+|......++++... ......++++++.|-.+..++-.+
T Consensus 279 -----------------------FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~V 332 (620)
T KOG1490|consen 279 -----------------------FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDV 332 (620)
T ss_pred -----------------------hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccchhceeeH
Confidence 348999999999998766555544322 333344578888887776665543
No 345
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.80 E-value=8.4e-09 Score=84.04 Aligned_cols=95 Identities=22% Similarity=0.198 Sum_probs=65.4
Q ss_pred cccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEe
Q psy15725 244 RSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323 (355)
Q Consensus 244 ~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 323 (355)
+.++.+...++|++++|+|++++..... ..+...+.. .++|+++|+||+|+.+.... .....+....+.+++++
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~i 76 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVLE---LGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVYV 76 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHHh---CCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEEE
Confidence 3455666778999999999987654322 122222222 47899999999998533221 11112333455789999
Q ss_pred cCCCCCCHHHHHHHHHHHcCC
Q psy15725 324 SAKAGYNVKQLFRRVAAALPG 344 (355)
Q Consensus 324 SA~~~~gv~~l~~~l~~~i~~ 344 (355)
||+++.|++++++.|.+.++.
T Consensus 77 Sa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 77 SAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred EccccccHHHHHHHHHHHHhh
Confidence 999999999999999998874
No 346
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.79 E-value=4.8e-08 Score=84.46 Aligned_cols=83 Identities=14% Similarity=0.228 Sum_probs=52.4
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
..+...|+++|++|+|||||++.+....- .. + .....|. + .+ ...+..++.+
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~-~~---~-------------------~~~~~g~-i---~i-~~~~~~~i~~ 87 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYT-KQ---N-------------------ISDIKGP-I---TV-VTGKKRRLTF 87 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcc-cC---c-------------------ccccccc-E---EE-EecCCceEEE
Confidence 34567899999999999999999987311 00 0 0000110 0 01 1123457899
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcch
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s 123 (355)
+||||.- .......+.+|++++|+|++....
T Consensus 88 vDtPg~~---~~~l~~ak~aDvVllviDa~~~~~ 118 (225)
T cd01882 88 IECPNDI---NAMIDIAKVADLVLLLIDASFGFE 118 (225)
T ss_pred EeCCchH---HHHHHHHHhcCEEEEEEecCcCCC
Confidence 9999853 222234678999999999987543
No 347
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.77 E-value=7e-10 Score=104.02 Aligned_cols=115 Identities=19% Similarity=0.250 Sum_probs=83.4
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCc----------ccHHHHHHHHHHHHhhc-CCCceEEEEeeCC
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA----------NSFHQTSKWIDDVRTER-GSDVIIMLVGNKT 296 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~piilv~nK~ 296 (355)
....+.++|.+|+...+..|..++.++++++||+++++. ..+++....++.+.... ..+.|++|++||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 567789999999999999999999999999999998532 23445455666665543 3789999999999
Q ss_pred CCCC------c-------c-----cCCHHHHHHHHhh------------cCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725 297 DLSD------K-------R-----QVSTEEGERKAKE------------LNVMFIETSAKAGYNVKQLFRRVAAAL 342 (355)
Q Consensus 297 Dl~~------~-------~-----~v~~~~~~~~~~~------------~~~~~~~~SA~~~~gv~~l~~~l~~~i 342 (355)
|+.. + + .-....+..+... ..+.++.++|....++..+|+.+.+.|
T Consensus 314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 9721 1 0 0223344444321 234788999999999999999998764
No 348
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.77 E-value=7.5e-08 Score=81.27 Aligned_cols=113 Identities=16% Similarity=0.163 Sum_probs=76.5
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCce-EEEEeeCCCCCCcccCCH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKRQVST 306 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~~ 306 (355)
+...+.++||||...|.......+..+|++++|+|++....-+. .+....+.. .++| +|++.||+|+........
T Consensus 63 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~ 138 (195)
T cd01884 63 ANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQT-REHLLLARQ---VGVPYIVVFLNKADMVDDEELLE 138 (195)
T ss_pred CCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHH
Confidence 34567899999988887766677789999999999987654222 233333443 4677 889999999863322111
Q ss_pred ---HHHHHHHhhc-----CcEEEEecCCCCCC----------HHHHHHHHHHHcCC
Q psy15725 307 ---EEGERKAKEL-----NVMFIETSAKAGYN----------VKQLFRRVAAALPG 344 (355)
Q Consensus 307 ---~~~~~~~~~~-----~~~~~~~SA~~~~g----------v~~l~~~l~~~i~~ 344 (355)
.+...+.... +++++++||++|.| +..|+++|.+.++.
T Consensus 139 ~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~~~~~w~~~~~~l~~~l~~~~~~ 194 (195)
T cd01884 139 LVEMEVRELLSKYGFDGDNTPIVRGSALKALEGDDPNKWVKKILELLDALDSYIPT 194 (195)
T ss_pred HHHHHHHHHHHHhcccccCCeEEEeeCccccCCCCCCcchhcHhHHHHHHHhCCCC
Confidence 1233333333 36899999999997 45788888766553
No 349
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.76 E-value=4.9e-08 Score=79.78 Aligned_cols=110 Identities=20% Similarity=0.186 Sum_probs=73.8
Q ss_pred eEEEEEEeCCCcccccc--------cccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725 229 QVRLQLWDTAGQERFRS--------LIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 300 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~--------~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 300 (355)
...+.++|++|...... .....+..++++++|+|++++.+. ....+...+.. .+.|+++++||+|+..
T Consensus 50 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~---~~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 50 DAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGE-GDEFILELLKK---SKTPVILVLNKIDLVK 125 (168)
T ss_pred CeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCc-hHHHHHHHHHH---hCCCEEEEEEchhccc
Confidence 45678999999543322 233457889999999999987321 12223333433 3689999999999873
Q ss_pred cccCCHHHHHHHHhhc-CcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725 301 KRQVSTEEGERKAKEL-NVMFIETSAKAGYNVKQLFRRVAAAL 342 (355)
Q Consensus 301 ~~~v~~~~~~~~~~~~-~~~~~~~SA~~~~gv~~l~~~l~~~i 342 (355)
...........+.... ..+++++||+++.|+++++++|.+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 126 DKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKYL 168 (168)
T ss_pred cHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhhC
Confidence 2222222233333333 36899999999999999999998753
No 350
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.76 E-value=3e-08 Score=83.63 Aligned_cols=94 Identities=26% Similarity=0.252 Sum_probs=66.1
Q ss_pred ccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHH-----hhcC
Q psy15725 243 FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKA-----KELN 317 (355)
Q Consensus 243 ~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~ 317 (355)
++..+..++..++++++|+|+++.... |...+.... .++|+++|+||+|+..... .......+. +..+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~~-~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLFG-GNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHhc-CCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcC
Confidence 566778889999999999999876421 222222222 5789999999999864332 222222222 2223
Q ss_pred ---cEEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725 318 ---VMFIETSAKAGYNVKQLFRRVAAALP 343 (355)
Q Consensus 318 ---~~~~~~SA~~~~gv~~l~~~l~~~i~ 343 (355)
.+++++||++|.|+++++++|.+.++
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 26999999999999999999999876
No 351
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.76 E-value=7.7e-08 Score=83.25 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=23.4
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCC
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSF 38 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~ 38 (355)
.-..|+|+|+.|+||||+++++.+..+
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~ 51 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDF 51 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCc
Confidence 334799999999999999999998753
No 352
>KOG1707|consensus
Probab=98.76 E-value=7.3e-08 Score=90.46 Aligned_cols=135 Identities=19% Similarity=0.275 Sum_probs=90.6
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+-+...|+|+.++|||.|+++|++..+... ...+....+....+...+..-++.+-|
T Consensus 424 ~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~-----------------------~~~~~~~~~avn~v~~~g~~k~LiL~e 480 (625)
T KOG1707|consen 424 KVFQCFVVGPKNCGKSALLQSFLGRSMSDN-----------------------NTGTTKPRYAVNSVEVKGQQKYLILRE 480 (625)
T ss_pred eeeeEEEEcCCcCchHHHHHHHhccccccc-----------------------cccCCCCceeeeeeeeccccceEEEee
Confidence 458899999999999999999999554332 222223333333333335555677777
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW 171 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (355)
.+-. ....+.... ..||+++++||.+++.+|+.....++....
T Consensus 481 i~~~-~~~~l~~ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~----------------------------------- 523 (625)
T KOG1707|consen 481 IGED-DQDFLTSKE-AACDVACLVYDSSNPRSFEYLAEVYNKYFD----------------------------------- 523 (625)
T ss_pred cCcc-ccccccCcc-ceeeeEEEecccCCchHHHHHHHHHHHhhh-----------------------------------
Confidence 7754 222222222 679999999999999999887665544321
Q ss_pred cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCe
Q psy15725 172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV 214 (355)
Q Consensus 172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~ 214 (355)
...+|+++|++|+|+....+...-+...++.+++.
T Consensus 524 --------~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i 558 (625)
T KOG1707|consen 524 --------LYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGL 558 (625)
T ss_pred --------ccCCceEEEeeccccchhhhccCCChHHHHHhcCC
Confidence 15899999999999976543333334666766665
No 353
>PRK12289 GTPase RsgA; Reviewed
Probab=98.76 E-value=3.6e-08 Score=90.25 Aligned_cols=92 Identities=14% Similarity=0.244 Sum_probs=68.5
Q ss_pred cccccccCCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEec
Q psy15725 246 LIPSYIRDSTVAVVVYDITNAN-SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETS 324 (355)
Q Consensus 246 ~~~~~~~~~~~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 324 (355)
+.+..+.++|.+++|+|+.++. ....+..|+..+.. .++|+++|+||+||.++... .......+..+++++++|
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~iS 156 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFIS 156 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEEE
Confidence 3445588999999999998765 44456777766643 68999999999999644322 112233346678999999
Q ss_pred CCCCCCHHHHHHHHHHHc
Q psy15725 325 AKAGYNVKQLFRRVAAAL 342 (355)
Q Consensus 325 A~~~~gv~~l~~~l~~~i 342 (355)
|+++.|++++++.|...+
T Consensus 157 A~tg~GI~eL~~~L~~ki 174 (352)
T PRK12289 157 VETGIGLEALLEQLRNKI 174 (352)
T ss_pred cCCCCCHHHHhhhhccce
Confidence 999999999999987644
No 354
>KOG3886|consensus
Probab=98.75 E-value=9.7e-09 Score=85.45 Aligned_cols=100 Identities=23% Similarity=0.351 Sum_probs=65.8
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCC-ccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
.-||+++|..|+|||++-.-++.+. ..++. ...+|+.+......+ -+++.+++||
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny---------------------~a~D~~rlg~tidveHsh~Rf---lGnl~LnlwD 59 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANY---------------------IARDTRRLGATIDVEHSHVRF---LGNLVLNLWD 59 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhh---------------------hhhhhhccCCcceeeehhhhh---hhhheeehhc
Confidence 4589999999999999876655422 11111 223344333333322 2347899999
Q ss_pred cCCcccc-----cccccccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725 92 TAGQERF-----RSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT 136 (355)
Q Consensus 92 ~~g~~~~-----~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~ 136 (355)
++|++.| .......++..+++++|||++..+--.++..+.+-++.
T Consensus 60 cGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ 109 (295)
T KOG3886|consen 60 CGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEA 109 (295)
T ss_pred cCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHH
Confidence 9999743 33556678999999999999987665666655554443
No 355
>KOG0071|consensus
Probab=98.75 E-value=3.8e-08 Score=75.27 Aligned_cols=114 Identities=23% Similarity=0.422 Sum_probs=91.3
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC-CCceEEEEeeCCCCCCcccCCH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDKRQVST 306 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~v~~ 306 (355)
.++.+.+||.+|+...+.+|++||.+..++|||+|+.+...+++....+..+..... .+.|+++.+||+|+.... +.
T Consensus 59 kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~--~p 136 (180)
T KOG0071|consen 59 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM--KP 136 (180)
T ss_pred eeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc--CH
Confidence 356788999999999999999999999999999999988888777666555544332 689999999999996432 23
Q ss_pred HHHHH-----HHhhcCcEEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725 307 EEGER-----KAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343 (355)
Q Consensus 307 ~~~~~-----~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~ 343 (355)
++... -++...|.++++||.+|.|+.|.|-||.....
T Consensus 137 qei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 137 QEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred HHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhhcc
Confidence 33332 24455689999999999999999999987654
No 356
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.75 E-value=1.7e-07 Score=84.77 Aligned_cols=103 Identities=16% Similarity=0.092 Sum_probs=59.0
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCH---
Q psy15725 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST--- 306 (355)
Q Consensus 230 i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~--- 306 (355)
+.+.|+||+|.-... ......+|.++++.... +-+++......+ .++|.++++||+|+........
T Consensus 127 ~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~~ 195 (300)
T TIGR00750 127 YDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIARL 195 (300)
T ss_pred CCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHHH
Confidence 345566776632111 12345567777664322 323333333333 3578899999999864332110
Q ss_pred HH--H-HHHHhh-cC--cEEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725 307 EE--G-ERKAKE-LN--VMFIETSAKAGYNVKQLFRRVAAALP 343 (355)
Q Consensus 307 ~~--~-~~~~~~-~~--~~~~~~SA~~~~gv~~l~~~l~~~i~ 343 (355)
.. . ..+... .+ .+++++||+++.|+++++++|.+...
T Consensus 196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 00 0 111111 12 36999999999999999999998744
No 357
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.73 E-value=1.3e-08 Score=88.98 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=73.6
Q ss_pred ccccccccccccCccEEEEEEECCCcc-hhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccccc
Q psy15725 96 ERFRSLIPSYIRDSTVAVVVYDITNAN-SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDD 174 (355)
Q Consensus 96 ~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (355)
+++..+.+.+++++|++++|||+.++. +|..+..|+..+..
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~-------------------------------------- 65 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA-------------------------------------- 65 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--------------------------------------
Confidence 677888888999999999999999877 89999999876643
Q ss_pred ccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEE
Q psy15725 175 VRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQ 233 (355)
Q Consensus 175 ~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~ 233 (355)
.++|+++|+||+|+.+.+.+..+....+. ..+.+++.+|+.++.++++++..
T Consensus 66 ------~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~~v~~~SAktg~gi~eLf~~ 117 (245)
T TIGR00157 66 ------QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGYQVLMTSSKNQDGLKELIEA 117 (245)
T ss_pred ------CCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCCeEEEEecCCchhHHHHHhh
Confidence 37999999999999765544433344443 46788999999999888775543
No 358
>KOG0458|consensus
Probab=98.72 E-value=9.2e-08 Score=89.81 Aligned_cols=110 Identities=25% Similarity=0.433 Sum_probs=76.9
Q ss_pred CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCC--------ceeeeecccceeeecccCCCCCccccccceeeeeeeeee
Q psy15725 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNT--------YQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL 80 (355)
Q Consensus 9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 80 (355)
.+.+.++++|+|+-++|||||+.+++..--... ......|+.+|+.....+..-.+....+..+. ....+
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v--~~~~f 250 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDV--KTTWF 250 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEe--eeEEE
Confidence 344789999999999999999999987532111 00112455555444444444444444444444 44444
Q ss_pred cCcEEEEEEEecCCcccccccccccccCccEEEEEEECCC
Q psy15725 81 EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120 (355)
Q Consensus 81 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 120 (355)
+.+...+.++|.||+..|...+......+|++++|+|++.
T Consensus 251 es~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~ 290 (603)
T KOG0458|consen 251 ESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST 290 (603)
T ss_pred ecCceeEEEecCCCccccchhhhccccccceEEEEEECCc
Confidence 5566789999999999999999899999999999999987
No 359
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.72 E-value=4.4e-07 Score=74.30 Aligned_cols=78 Identities=29% Similarity=0.282 Sum_probs=50.9
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHh-hcCCCceEEEEeeCCCCCCcccCCHHHHHHHHh--hcCcEEEEecCCCCCCHH
Q psy15725 256 VAVVVYDITNANSFHQTSKWIDDVRT-ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK--ELNVMFIETSAKAGYNVK 332 (355)
Q Consensus 256 ~vi~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~--~~~~~~~~~SA~~~~gv~ 332 (355)
.-|+|+|.+..+-.- .. +..--..-++|.||.|+...-....+....-++ +-..|++++|+++|+|++
T Consensus 120 ~~v~VidvteGe~~P---------~K~gP~i~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~ 190 (202)
T COG0378 120 LRVVVIDVTEGEDIP---------RKGGPGIFKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLD 190 (202)
T ss_pred eEEEEEECCCCCCCc---------ccCCCceeEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHH
Confidence 667888887654311 01 111123578999999996433332233333333 344799999999999999
Q ss_pred HHHHHHHHHc
Q psy15725 333 QLFRRVAAAL 342 (355)
Q Consensus 333 ~l~~~l~~~i 342 (355)
++++|+....
T Consensus 191 ~~~~~i~~~~ 200 (202)
T COG0378 191 EWLRFIEPQA 200 (202)
T ss_pred HHHHHHHhhc
Confidence 9999998764
No 360
>KOG0468|consensus
Probab=98.71 E-value=6.4e-08 Score=91.77 Aligned_cols=115 Identities=20% Similarity=0.240 Sum_probs=78.9
Q ss_pred CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee---cCcEE
Q psy15725 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL---EDRTV 85 (355)
Q Consensus 9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~ 85 (355)
++..-.+++++|+-+.|||+|+.-|..+..+....++- .--+|....+. +....+++.....++.+ .++..
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e-----~~lrytD~l~~-E~eRg~sIK~~p~Tl~l~D~~~KS~ 197 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTE-----ADLRYTDTLFY-EQERGCSIKSTPVTLVLSDSKGKSY 197 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceecccccccccc-----ccccccccchh-hHhcCceEeecceEEEEecCcCcee
Confidence 34556899999999999999999998877654433221 11122221111 22223333333444333 45677
Q ss_pred EEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHH
Q psy15725 86 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129 (355)
Q Consensus 86 ~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~ 129 (355)
-++++||||+-.|-..+...++.+|++++|+|+.+.-.++.-+-
T Consensus 198 l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ 241 (971)
T KOG0468|consen 198 LMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERI 241 (971)
T ss_pred eeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHH
Confidence 89999999999999999999999999999999999877765433
No 361
>KOG0394|consensus
Probab=98.70 E-value=6e-08 Score=77.90 Aligned_cols=73 Identities=33% Similarity=0.641 Sum_probs=59.4
Q ss_pred hccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC
Q psy15725 210 KELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284 (355)
Q Consensus 210 ~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~ 284 (355)
..++..|..-... .+..-+.++||||+|+++|.++...+|+++|..++|||+.++.+++.+..|.+++..++.
T Consensus 40 aTIgadFltKev~--Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~ 112 (210)
T KOG0394|consen 40 ATIGADFLTKEVQ--VDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQAS 112 (210)
T ss_pred cccchhheeeEEE--EcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcC
Confidence 3444444433322 234566789999999999999999999999999999999999999999999999888753
No 362
>PRK12288 GTPase RsgA; Reviewed
Probab=98.67 E-value=1.2e-07 Score=86.85 Aligned_cols=90 Identities=16% Similarity=0.172 Sum_probs=69.4
Q ss_pred cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccC-CHHHHHHHHhhcCcEEEEecCCCC
Q psy15725 250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV-STEEGERKAKELNVMFIETSAKAG 328 (355)
Q Consensus 250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v-~~~~~~~~~~~~~~~~~~~SA~~~ 328 (355)
..+++|.+++|++.+...++..+..|+..+.. .++|+++|+||+|+.+.... .........+..+++++++||+++
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg 193 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTG 193 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 35789999999999888899889999876544 57999999999999644221 111222333456789999999999
Q ss_pred CCHHHHHHHHHHHc
Q psy15725 329 YNVKQLFRRVAAAL 342 (355)
Q Consensus 329 ~gv~~l~~~l~~~i 342 (355)
.|+++++++|...+
T Consensus 194 ~GideL~~~L~~ki 207 (347)
T PRK12288 194 EGLEELEAALTGRI 207 (347)
T ss_pred cCHHHHHHHHhhCC
Confidence 99999999997654
No 363
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.67 E-value=5e-08 Score=89.01 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhc
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYD 36 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~ 36 (355)
.+++|+|+|.+|+|||||+|+|.+-
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl 58 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGL 58 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT-
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999999773
No 364
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.66 E-value=7.1e-07 Score=78.87 Aligned_cols=56 Identities=21% Similarity=0.204 Sum_probs=39.7
Q ss_pred CceEEEEeeCCCCCCcccCCHHHHHHHHhh--cCcEEEEecCCCCCCHHHHHHHHHHH
Q psy15725 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKE--LNVMFIETSAKAGYNVKQLFRRVAAA 341 (355)
Q Consensus 286 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~--~~~~~~~~SA~~~~gv~~l~~~l~~~ 341 (355)
..+.++|.||+|+........+...+..+. .+.+++++||++|+|++++++||...
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999964211112222333333 34689999999999999999999874
No 365
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.65 E-value=1.2e-07 Score=85.06 Aligned_cols=87 Identities=17% Similarity=0.185 Sum_probs=67.9
Q ss_pred ccccCCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCC
Q psy15725 249 SYIRDSTVAVVVYDITNAN-SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA 327 (355)
Q Consensus 249 ~~~~~~~~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~ 327 (355)
..+.++|.+++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.++.. ...........+.+++++||++
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~~ 148 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAKT 148 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECCC
Confidence 3478899999999999887 77788888877765 5799999999999964421 1122223344678999999999
Q ss_pred CCCHHHHHHHHHH
Q psy15725 328 GYNVKQLFRRVAA 340 (355)
Q Consensus 328 ~~gv~~l~~~l~~ 340 (355)
+.|+++++..|..
T Consensus 149 g~gi~~L~~~L~~ 161 (287)
T cd01854 149 GEGLDELREYLKG 161 (287)
T ss_pred CccHHHHHhhhcc
Confidence 9999999998865
No 366
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.65 E-value=1.1e-07 Score=84.05 Aligned_cols=168 Identities=21% Similarity=0.268 Sum_probs=105.2
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCC--CCCceeeeecccceeee-----------cccCCCCCccccccceeeeeeeee
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSF--DNTYQATIVGKTSLITR-----------FMYDSFDNTYQATIGIDFLSKTMY 79 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~--~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~t~~~~~~~~~~~ 79 (355)
.++++-+|.-.=|||||+-||+...- .+....++ ..-+.+ .+.+.+..+....+.+++..+.+.
T Consensus 6 lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l---~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 6 LLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASL---ERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred ceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHH---hcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 47899999999999999999998642 11111111 000000 011122223334566666666654
Q ss_pred ecCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccc
Q psy15725 80 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSF 159 (355)
Q Consensus 80 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
-+. -.|.+-||||++.|...+......||.+|+++|+... .....+-+..|..+.
T Consensus 83 T~K--RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QTrRHs~I~sLL--------------------- 137 (431)
T COG2895 83 TEK--RKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQTRRHSFIASLL--------------------- 137 (431)
T ss_pred ccc--ceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHhHHHHHHHHHh---------------------
Confidence 433 4799999999999999999999999999999999552 322222233332221
Q ss_pred cccCccccCccccccccccCCCccEEEEEeecCCCCcccceeh----hhhhhhhhccC---eEEEEeeeeeccccce
Q psy15725 160 HHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST----EEGERKAKELN---VMFIETSAKAGYNVKQ 229 (355)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~----~~~~~~~~~~~---~~~~~~sa~~~~~v~~ 229 (355)
.=..+++.+||.|+.+-.+-.. .+...++..++ ..++++|+..|.|+-.
T Consensus 138 ---------------------GIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 138 ---------------------GIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred ---------------------CCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 1235788899999965322111 22334555555 4788999999988754
No 367
>PRK00098 GTPase RsgA; Reviewed
Probab=98.65 E-value=1.2e-07 Score=85.41 Aligned_cols=88 Identities=19% Similarity=0.194 Sum_probs=65.6
Q ss_pred cccCCcEEEEEEeCCCcccHHH-HHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCC
Q psy15725 250 YIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 328 (355)
Q Consensus 250 ~~~~~~~vi~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~ 328 (355)
.+.++|.+++|+|++++..... +..|+..+.. .++|+++|+||+|+.+.... ........+..+++++++||+++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~~-~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLEE-ARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHHH-HHHHHHHHHHCCCeEEEEeCCCC
Confidence 3689999999999988765444 4677776654 58999999999999632211 12223344556789999999999
Q ss_pred CCHHHHHHHHHHH
Q psy15725 329 YNVKQLFRRVAAA 341 (355)
Q Consensus 329 ~gv~~l~~~l~~~ 341 (355)
.|++++++.|...
T Consensus 153 ~gi~~L~~~l~gk 165 (298)
T PRK00098 153 EGLDELKPLLAGK 165 (298)
T ss_pred ccHHHHHhhccCc
Confidence 9999999987543
No 368
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.64 E-value=1.2e-07 Score=81.52 Aligned_cols=114 Identities=19% Similarity=0.222 Sum_probs=79.7
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCccc-CCH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ-VST 306 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-v~~ 306 (355)
..+.+.++|++|+..|......++..+|++++|+|.++..+... ..++..+.. .++|+++++||+|+...+. ...
T Consensus 69 ~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~~~~~~l~~ 144 (213)
T cd04167 69 KSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRLILELKLPP 144 (213)
T ss_pred CEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccCcccccCCH
Confidence 45788999999999988888888899999999999987766543 233343333 4699999999999752111 111
Q ss_pred HH-----------HHHHHhhcC-------cE----EEEecCCCCCCHH--------HHHHHHHHHcCCC
Q psy15725 307 EE-----------GERKAKELN-------VM----FIETSAKAGYNVK--------QLFRRVAAALPGM 345 (355)
Q Consensus 307 ~~-----------~~~~~~~~~-------~~----~~~~SA~~~~gv~--------~l~~~l~~~i~~~ 345 (355)
.+ ....+...+ +| ++++||+.+++.+ ++++.|.+.++.+
T Consensus 145 ~~~~~~l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 213 (213)
T cd04167 145 NDAYFKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIPSP 213 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCCCC
Confidence 11 111122121 23 8899999999888 8999998888753
No 369
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.63 E-value=1.6e-07 Score=80.67 Aligned_cols=114 Identities=22% Similarity=0.201 Sum_probs=79.0
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCC-CcccCCH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS-DKRQVST 306 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~v~~ 306 (355)
..+.+.++||||+..|.......+..+|++++|+|++...+.+.. ..+..... .++|+++++||+|+. .+..+..
T Consensus 71 ~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~---~~~p~ilviNKiD~~~~e~~~~~ 146 (222)
T cd01885 71 NEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK---ERVKPVLVINKIDRLILELKLSP 146 (222)
T ss_pred CceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCcchhhhcCCH
Confidence 367889999999999999888999999999999999988765542 22222222 478999999999975 2222222
Q ss_pred HHHH-----------HHHhhc-------------Cc-E----EEEecCCCCC--------CHHHHHHHHHHHcCCC
Q psy15725 307 EEGE-----------RKAKEL-------------NV-M----FIETSAKAGY--------NVKQLFRRVAAALPGM 345 (355)
Q Consensus 307 ~~~~-----------~~~~~~-------------~~-~----~~~~SA~~~~--------gv~~l~~~l~~~i~~~ 345 (355)
.++. .+.... .+ | +.++||+.|+ ++..+|+.++..+|.+
T Consensus 147 ~~~~~~~~~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~~~~f~~~~~~~~~~~~~~~~p 222 (222)
T cd01885 147 EEAYQRLARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTIIKFARIYAVLEMVVKHLPSP 222 (222)
T ss_pred HHHHHHHHHHHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEeccccccchHHHHHHHHhhCCCC
Confidence 2211 111111 12 5 8899999765 5667888888888763
No 370
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.63 E-value=7.7e-08 Score=82.96 Aligned_cols=102 Identities=22% Similarity=0.195 Sum_probs=65.6
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcc-------cHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN-------SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 300 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~-------s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 300 (355)
....+.++|++|+..|...+...+..+|++++|+|+++.. ..+... ....... . ...|+++++||+|+..
T Consensus 75 ~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~-~~~~~~~-~-~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 75 EKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTRE-HALLART-L-GVKQLIVAVNKMDDVT 151 (219)
T ss_pred CCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHH-HHHHHHH-c-CCCeEEEEEEcccccc
Confidence 4567899999998877766666678899999999998742 111221 1222222 1 2378999999999863
Q ss_pred cc--cC-CH---HHHHHHHhhc-----CcEEEEecCCCCCCHH
Q psy15725 301 KR--QV-ST---EEGERKAKEL-----NVMFIETSAKAGYNVK 332 (355)
Q Consensus 301 ~~--~v-~~---~~~~~~~~~~-----~~~~~~~SA~~~~gv~ 332 (355)
.. .- .. .....+.... .++++++||++|.||+
T Consensus 152 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 152 VNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 21 00 00 1111122232 3689999999999987
No 371
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.63 E-value=1e-07 Score=81.55 Aligned_cols=101 Identities=20% Similarity=0.195 Sum_probs=66.1
Q ss_pred eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCC-ceEEEEeeCCCCCCcccC---
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD-VIIMLVGNKTDLSDKRQV--- 304 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~piilv~nK~Dl~~~~~v--- 304 (355)
...+.++||+|.+.|.......+..+|++++|+|++++..-+. ......+.. .+ .++|+|.||+|+.+...-
T Consensus 76 ~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~ 151 (208)
T cd04166 76 KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSL---LGIRHVVVAVNKMDLVDYSEEVFE 151 (208)
T ss_pred CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHH---cCCCcEEEEEEchhcccCCHHHHH
Confidence 4467799999998876655667889999999999987643222 122222222 23 458889999998642211
Q ss_pred -CHHHHHHHHhhcC---cEEEEecCCCCCCHHH
Q psy15725 305 -STEEGERKAKELN---VMFIETSAKAGYNVKQ 333 (355)
Q Consensus 305 -~~~~~~~~~~~~~---~~~~~~SA~~~~gv~~ 333 (355)
...+...+.+..+ ++++++||++|.|+++
T Consensus 152 ~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 152 EIVADYLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 0112233344444 4699999999999975
No 372
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.63 E-value=2.7e-07 Score=86.69 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=76.5
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceE-EEEeeCCCCCCcccCC-
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII-MLVGNKTDLSDKRQVS- 305 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl~~~~~v~- 305 (355)
+...+.++||||++.|..........+|++++|+|++.....+.. +.+..+.. .++|. |++.||+|+.+.+...
T Consensus 73 ~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~ 148 (394)
T TIGR00485 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQ---VGVPYIVVFLNKCDMVDDEELLE 148 (394)
T ss_pred CCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCEEEEEEEecccCCHHHHHH
Confidence 345678999999988876555556788999999999875443322 33333333 46775 5789999987543221
Q ss_pred --HHHHHHHHhhcC-----cEEEEecCCCCC--------CHHHHHHHHHHHcCCCC
Q psy15725 306 --TEEGERKAKELN-----VMFIETSAKAGY--------NVKQLFRRVAAALPGMD 346 (355)
Q Consensus 306 --~~~~~~~~~~~~-----~~~~~~SA~~~~--------gv~~l~~~l~~~i~~~~ 346 (355)
..+...+.+..+ ++++++||++|. ++.+++++|.+.++.+.
T Consensus 149 ~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~ 204 (394)
T TIGR00485 149 LVEMEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPE 204 (394)
T ss_pred HHHHHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCC
Confidence 123334444443 689999999875 46778888887766443
No 373
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.62 E-value=6.7e-07 Score=79.63 Aligned_cols=70 Identities=19% Similarity=0.302 Sum_probs=41.3
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~ 92 (355)
.++|+|+|..|+|||||+|.|++........+. ........++..+......+.-++..+.+.++||
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~-------------~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDT 70 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSI-------------PPPSASISRTLEIEERTVELEENGVKLNLTIIDT 70 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS----------------------S------SCEEEEEEEEEEEETCEEEEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccc-------------cccccccccccceeeEEEEeccCCcceEEEEEeC
Confidence 589999999999999999999996543221000 0111122233344444444455567888999999
Q ss_pred CCc
Q psy15725 93 AGQ 95 (355)
Q Consensus 93 ~g~ 95 (355)
||-
T Consensus 71 pGf 73 (281)
T PF00735_consen 71 PGF 73 (281)
T ss_dssp C-C
T ss_pred CCc
Confidence 993
No 374
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.62 E-value=2.6e-08 Score=74.83 Aligned_cols=129 Identities=22% Similarity=0.256 Sum_probs=78.6
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 94 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 94 (355)
||++||..|+|||||++++-+... ..+++-.++++. =..+||||
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~----------------------------------lykKTQAve~~d--~~~IDTPG 46 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT----------------------------------LYKKTQAVEFND--KGDIDTPG 46 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh----------------------------------hhcccceeeccC--ccccCCch
Confidence 799999999999999999987321 111111111110 12579998
Q ss_pred c----ccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 95 Q----ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 95 ~----~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
. ..+.........++|++++|-.++++++.-.- .+
T Consensus 47 Ey~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p-~f---------------------------------------- 85 (148)
T COG4917 47 EYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPP-GF---------------------------------------- 85 (148)
T ss_pred hhhhhhHHHHHHHHHhhccceeeeeecccCccccCCc-cc----------------------------------------
Confidence 4 22222333446789999999999997553110 00
Q ss_pred ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccC-eEEEEeeeeeccccce
Q psy15725 171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQ 229 (355)
Q Consensus 171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~-~~~~~~sa~~~~~v~~ 229 (355)
...-..|+|=|++|.|+..+..+. ....+..+.+ .+++.+|+..+.+++.
T Consensus 86 -------~~~~~k~vIgvVTK~DLaed~dI~--~~~~~L~eaGa~~IF~~s~~d~~gv~~ 136 (148)
T COG4917 86 -------LDIGVKKVIGVVTKADLAEDADIS--LVKRWLREAGAEPIFETSAVDNQGVEE 136 (148)
T ss_pred -------ccccccceEEEEecccccchHhHH--HHHHHHHHcCCcceEEEeccCcccHHH
Confidence 111256699999999998544332 3334444444 4788888877766654
No 375
>KOG0084|consensus
Probab=98.61 E-value=8.9e-08 Score=77.91 Aligned_cols=69 Identities=39% Similarity=0.768 Sum_probs=57.7
Q ss_pred hhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725 209 AKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 279 (355)
Q Consensus 209 ~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i 279 (355)
...+++.+...+.. ...+.++++||||+|+++|+++..++|+++++||+|||+++.+||+.+..|+.++
T Consensus 39 ~sTIGVDf~~rt~e--~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei 107 (205)
T KOG0084|consen 39 ISTIGVDFKIRTVE--LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEI 107 (205)
T ss_pred cceeeeEEEEEEee--ecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHh
Confidence 34455555544432 3456789999999999999999999999999999999999999999999999876
No 376
>KOG0094|consensus
Probab=98.61 E-value=2.1e-07 Score=75.58 Aligned_cols=63 Identities=73% Similarity=1.110 Sum_probs=55.8
Q ss_pred eeeeccccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhh
Q psy15725 220 SAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE 282 (355)
Q Consensus 220 sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~ 282 (355)
|-........+.+++|||+|+++|+.+++.|++++.++|+|||+++..+|++..+|++.+...
T Consensus 61 skt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e 123 (221)
T KOG0094|consen 61 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRE 123 (221)
T ss_pred EEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhc
Confidence 333334445889999999999999999999999999999999999999999999999999873
No 377
>KOG0092|consensus
Probab=98.60 E-value=3e-07 Score=74.63 Aligned_cols=68 Identities=37% Similarity=0.826 Sum_probs=58.9
Q ss_pred hccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725 210 KELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 279 (355)
Q Consensus 210 ~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i 279 (355)
..++..|.......+.. .+.+.||||+|+++|+++.+.||++++++|+|||+++..||..+..|++++
T Consensus 36 ~TIGaaF~tktv~~~~~--~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL 103 (200)
T KOG0092|consen 36 PTIGAAFLTKTVTVDDN--TIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKEL 103 (200)
T ss_pred cccccEEEEEEEEeCCc--EEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHH
Confidence 34566777666554443 789999999999999999999999999999999999999999999999876
No 378
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.58 E-value=1.1e-07 Score=79.23 Aligned_cols=98 Identities=16% Similarity=0.209 Sum_probs=61.9
Q ss_pred EEEEEeCCCcc----------ccccccccccc---CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCC
Q psy15725 231 RLQLWDTAGQE----------RFRSLIPSYIR---DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 297 (355)
Q Consensus 231 ~~~i~D~~g~~----------~~~~~~~~~~~---~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 297 (355)
.+.+||++|.. .+......++. .++++++|+|.+++.+..+. .....+.. .++|+++++||+|
T Consensus 65 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D 140 (179)
T TIGR03598 65 GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKAD 140 (179)
T ss_pred cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcc
Confidence 46899999942 22222223333 45799999999876654443 22333333 4799999999999
Q ss_pred CCCcccC--CHHHHHHHHhhcC--cEEEEecCCCCCCHH
Q psy15725 298 LSDKRQV--STEEGERKAKELN--VMFIETSAKAGYNVK 332 (355)
Q Consensus 298 l~~~~~v--~~~~~~~~~~~~~--~~~~~~SA~~~~gv~ 332 (355)
+...... ..++........+ ++++++||++|+|++
T Consensus 141 ~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 141 KLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred cCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 8643221 1222233333333 589999999999974
No 379
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.57 E-value=4.9e-07 Score=91.10 Aligned_cols=109 Identities=14% Similarity=0.152 Sum_probs=80.6
Q ss_pred ceEEEEEEeCCCcccccccc----------ccc--ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeC
Q psy15725 228 KQVRLQLWDTAGQERFRSLI----------PSY--IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNK 295 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~----------~~~--~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK 295 (355)
+...+.++|+||...+.... ..+ ...+|++++|+|.++.+.. ..+...+.+ .++|+++++||
T Consensus 48 ~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK 121 (772)
T PRK09554 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNM 121 (772)
T ss_pred CceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEc
Confidence 34567899999987765321 122 2478999999999875432 223444444 58999999999
Q ss_pred CCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725 296 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343 (355)
Q Consensus 296 ~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~ 343 (355)
.|+.+.+.+. .....+.+..++|++++||++|.|++++++.+.+...
T Consensus 122 ~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 122 LDIAEKQNIR-IDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQA 168 (772)
T ss_pred hhhhhccCcH-HHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhhh
Confidence 9986554443 3455677788999999999999999999999988754
No 380
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.55 E-value=3.2e-07 Score=78.09 Aligned_cols=112 Identities=18% Similarity=0.286 Sum_probs=78.3
Q ss_pred eEEEEEEeCCCcccccccccccccCC-cEEEEEEeCCCc-ccHHHHHHHHHHHHhhc---CCCceEEEEeeCCCCCCccc
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDS-TVAVVVYDITNA-NSFHQTSKWIDDVRTER---GSDVIIMLVGNKTDLSDKRQ 303 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~-~~vi~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~ 303 (355)
...+.+||+||+..++..+..++..+ +++|+|+|+++. .++....+++..+.... ..++|+++++||+|+.....
T Consensus 47 ~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~ 126 (203)
T cd04105 47 GKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKP 126 (203)
T ss_pred CceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCC
Confidence 45678999999999998888889998 999999999987 56666666655543221 25899999999999853211
Q ss_pred ---CCHHHHHH----------------------------------HHh-hcCcEEEEecCCCCC-CHHHHHHHHHH
Q psy15725 304 ---VSTEEGER----------------------------------KAK-ELNVMFIETSAKAGY-NVKQLFRRVAA 340 (355)
Q Consensus 304 ---v~~~~~~~----------------------------------~~~-~~~~~~~~~SA~~~~-gv~~l~~~l~~ 340 (355)
+......+ +.+ ...+.+++||++.+. |++..-+||.+
T Consensus 127 ~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 127 AKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 11111000 000 011468899999877 69999998864
No 381
>KOG0099|consensus
Probab=98.52 E-value=2e-08 Score=85.05 Aligned_cols=121 Identities=20% Similarity=0.255 Sum_probs=84.1
Q ss_pred cccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcc----------cHHHHHHHHHHHHhhcC-CCceEEEEe
Q psy15725 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN----------SFHQTSKWIDDVRTERG-SDVIIMLVG 293 (355)
Q Consensus 225 ~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~----------s~~~~~~~~~~i~~~~~-~~~piilv~ 293 (355)
..++.+.+..+|.+|+...+..|-..+.+..++|||+.+++.. .+++....++.+....- ..+.+|+.+
T Consensus 197 FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFL 276 (379)
T KOG0099|consen 197 FQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFL 276 (379)
T ss_pred EeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEe
Confidence 4566777899999999999999999999999999999886532 22333334455533222 568899999
Q ss_pred eCCCCCCc---------------------------------ccCCHH-----HHHHHHh-----hcCcEEEEecCCCCCC
Q psy15725 294 NKTDLSDK---------------------------------RQVSTE-----EGERKAK-----ELNVMFIETSAKAGYN 330 (355)
Q Consensus 294 nK~Dl~~~---------------------------------~~v~~~-----~~~~~~~-----~~~~~~~~~SA~~~~g 330 (355)
||.|+..+ +.+... +...... .+.|...+++|..-+|
T Consensus 277 NKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTen 356 (379)
T KOG0099|consen 277 NKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTEN 356 (379)
T ss_pred cHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHH
Confidence 99998311 111111 1111111 1237788999999999
Q ss_pred HHHHHHHHHHHcCCC
Q psy15725 331 VKQLFRRVAAALPGM 345 (355)
Q Consensus 331 v~~l~~~l~~~i~~~ 345 (355)
|..+|..+.+.|.+.
T Consensus 357 IrrVFnDcrdiIqr~ 371 (379)
T KOG0099|consen 357 IRRVFNDCRDIIQRM 371 (379)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888654
No 382
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.51 E-value=2.6e-06 Score=74.38 Aligned_cols=84 Identities=15% Similarity=0.131 Sum_probs=51.9
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHH--H----hhcCc--EEEEe
Q psy15725 252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERK--A----KELNV--MFIET 323 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~--~----~~~~~--~~~~~ 323 (355)
.-+|.++++.=+.....++-++.= +.+ +--++|.||.|....+....+...++ . ...+| |++.+
T Consensus 163 ~~aDt~~~v~~pg~GD~~Q~iK~G---imE-----iaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t 234 (323)
T COG1703 163 NMADTFLVVMIPGAGDDLQGIKAG---IME-----IADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTT 234 (323)
T ss_pred hhcceEEEEecCCCCcHHHHHHhh---hhh-----hhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEe
Confidence 347777877755555444443322 322 34589999999653322111222221 1 12334 89999
Q ss_pred cCCCCCCHHHHHHHHHHHcC
Q psy15725 324 SAKAGYNVKQLFRRVAAALP 343 (355)
Q Consensus 324 SA~~~~gv~~l~~~l~~~i~ 343 (355)
||.+|+||+++++.|.+...
T Consensus 235 ~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 235 SALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred eeccCCCHHHHHHHHHHHHH
Confidence 99999999999999987654
No 383
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.50 E-value=2.1e-07 Score=71.87 Aligned_cols=66 Identities=35% Similarity=0.758 Sum_probs=54.7
Q ss_pred EEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHH---HHHHHHhhcCCCceEEEEeeCCC
Q psy15725 231 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK---WIDDVRTERGSDVIIMLVGNKTD 297 (355)
Q Consensus 231 ~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~---~~~~i~~~~~~~~piilv~nK~D 297 (355)
.+.+||++|.+.+...+...+..+|++++|||++++.+++.+.+ |+..+.... .++|+++|+||.|
T Consensus 51 ~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D 119 (119)
T PF08477_consen 51 SLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD 119 (119)
T ss_dssp EEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred EEEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence 38899999999888887777999999999999999999988754 556555443 5699999999998
No 384
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.48 E-value=2.6e-07 Score=81.65 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.6
Q ss_pred EEEEcCCCCChhHHHHHhhhcCC
Q psy15725 16 LVFLGEQSVGKTSLITRFMYDSF 38 (355)
Q Consensus 16 I~vvG~~~vGKStLl~~l~~~~~ 38 (355)
|++||.||||||||+|++++...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~ 23 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA 23 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC
Confidence 57999999999999999999653
No 385
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.47 E-value=5.1e-07 Score=82.43 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDS 37 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~ 37 (355)
++|++||.||||||||+|++++..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~ 26 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG 26 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999999865
No 386
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.47 E-value=1.2e-06 Score=83.23 Aligned_cols=103 Identities=20% Similarity=0.192 Sum_probs=70.3
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCccc---H---HHHHHHHHHHHhhcCCCce-EEEEeeCCCCC
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS---F---HQTSKWIDDVRTERGSDVI-IMLVGNKTDLS 299 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 299 (355)
.+...+.++|+||++.|.......+..+|++++|+|+++..- + ....+....+.. .++| +|++.||.|+.
T Consensus 82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDAT 158 (447)
T ss_pred CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCC
Confidence 346688999999999999888888899999999999987421 1 111122222222 5775 78899999975
Q ss_pred CcccCC-------HHHHHHHHhhcC-----cEEEEecCCCCCCHHH
Q psy15725 300 DKRQVS-------TEEGERKAKELN-----VMFIETSAKAGYNVKQ 333 (355)
Q Consensus 300 ~~~~v~-------~~~~~~~~~~~~-----~~~~~~SA~~~~gv~~ 333 (355)
+.. +. .++...+.+..+ ++++++||.+|.|+.+
T Consensus 159 ~~~-~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPK-YSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chh-hhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 211 11 223344444444 6899999999999853
No 387
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.46 E-value=7.7e-07 Score=72.51 Aligned_cols=90 Identities=16% Similarity=0.115 Sum_probs=58.6
Q ss_pred cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCC
Q psy15725 250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 329 (355)
Q Consensus 250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~ 329 (355)
.+.++|.+++|+|.+++..... ......+.. ...++|+++|+||+|+..++.. ......+.+...+.++++||+++.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~-~~i~~~l~~-~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRC-KHVEEYLKK-EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hhhhCCEEEEEEECCCCccccC-HHHHHHHHh-ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccccc
Confidence 3578999999999988743211 122222222 2246899999999999644321 112222333222346889999999
Q ss_pred CHHHHHHHHHHHc
Q psy15725 330 NVKQLFRRVAAAL 342 (355)
Q Consensus 330 gv~~l~~~l~~~i 342 (355)
|++++++.|....
T Consensus 82 ~~~~L~~~l~~~~ 94 (157)
T cd01858 82 GKGSLIQLLRQFS 94 (157)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999998764
No 388
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.46 E-value=5.6e-07 Score=83.31 Aligned_cols=95 Identities=29% Similarity=0.405 Sum_probs=69.2
Q ss_pred cccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHH----HHHhh
Q psy15725 240 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGE----RKAKE 315 (355)
Q Consensus 240 ~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~----~~~~~ 315 (355)
.+.|..+...++..++++++|+|+.+... .|...+.+.. .+.|+++|+||+|+... ....+... ..++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~-~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFV-GGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHh-CCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence 45677777888889999999999876552 2444444443 37899999999998643 23333333 23455
Q ss_pred cCc---EEEEecCCCCCCHHHHHHHHHHH
Q psy15725 316 LNV---MFIETSAKAGYNVKQLFRRVAAA 341 (355)
Q Consensus 316 ~~~---~~~~~SA~~~~gv~~l~~~l~~~ 341 (355)
.++ .++++||++|.|++++++.|.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 665 48999999999999999999775
No 389
>CHL00071 tufA elongation factor Tu
Probab=98.46 E-value=1.1e-06 Score=82.87 Aligned_cols=114 Identities=15% Similarity=0.138 Sum_probs=77.9
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCce-EEEEeeCCCCCCcccCCH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKRQVST 306 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~~ 306 (355)
+...+.++|+||+..|.......+..+|++++|+|+.....-+. .+.+..+.. .++| +|++.||+|+.+......
T Consensus 73 ~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~ 148 (409)
T CHL00071 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQT-KEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLE 148 (409)
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHH
Confidence 34567799999988876666666788999999999987654332 223333333 5788 789999999975332211
Q ss_pred ---HHHHHHHhhcC-----cEEEEecCCCCC------------------CHHHHHHHHHHHcCCC
Q psy15725 307 ---EEGERKAKELN-----VMFIETSAKAGY------------------NVKQLFRRVAAALPGM 345 (355)
Q Consensus 307 ---~~~~~~~~~~~-----~~~~~~SA~~~~------------------gv~~l~~~l~~~i~~~ 345 (355)
.+...+.+..+ ++++++||.+|. ++.+++++|.+.++..
T Consensus 149 ~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p 213 (409)
T CHL00071 149 LVELEVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTP 213 (409)
T ss_pred HHHHHHHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCC
Confidence 12333333332 689999999986 3678999998887654
No 390
>KOG1143|consensus
Probab=98.45 E-value=5.9e-06 Score=73.81 Aligned_cols=108 Identities=17% Similarity=0.216 Sum_probs=68.4
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeeccc----CCCCCccccccceeeeeeeeeec----
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMY----DSFDNTYQATIGIDFLSKTMYLE---- 81 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~t~~~~~~~~~~~~~---- 81 (355)
..-.++++|+|-..+|||||+--|+.+..+...-.+- ..+-|++. +..+......+|++.....+.+.
T Consensus 164 qfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrAR----ln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~t 239 (591)
T KOG1143|consen 164 QFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRAR----LNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMT 239 (591)
T ss_pred cceEEEEEEecCcccCcceeeeeeecccccCCCCeee----eehhcchhhhccCcccccchhcccccccccccchhhccc
Confidence 4557999999999999999999999888766543331 11111211 11111223345555443333321
Q ss_pred ------CcEEEEEEEecCCcccccccccccccC--ccEEEEEEECCCc
Q psy15725 82 ------DRTVRLQLWDTAGQERFRSLIPSYIRD--STVAVVVYDITNA 121 (355)
Q Consensus 82 ------~~~~~~~i~D~~g~~~~~~~~~~~~~~--~d~ii~v~d~~~~ 121 (355)
...--+.++|+.|+.+|.......+.+ .+.+++|+.+...
T Consensus 240 aEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~G 287 (591)
T KOG1143|consen 240 AEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRG 287 (591)
T ss_pred HHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCC
Confidence 122357899999999998877666654 5889999988774
No 391
>KOG1487|consensus
Probab=98.44 E-value=1.4e-06 Score=73.95 Aligned_cols=89 Identities=18% Similarity=0.239 Sum_probs=59.5
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCcccccc-ceeeeeeeeeecCcEEEEEEEe
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI-GIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~i~D 91 (355)
..++.++|-|.+|||||+..+.+.. .+. +.. +....+....+.++.-.+++.|
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~-s~v-------------------------asyefttl~~vpG~~~y~gaKiqlld 112 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTF-SEV-------------------------AAYEFTTLTTVPGVIRYKGAKIQLLD 112 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCC-Ccc-------------------------ccccceeEEEecceEeccccceeeec
Confidence 3578999999999999999988732 111 111 1122223334445667899999
Q ss_pred cCCccc-------ccccccccccCccEEEEEEECCCcchhhhH
Q psy15725 92 TAGQER-------FRSLIPSYIRDSTVAVVVYDITNANSFHQT 127 (355)
Q Consensus 92 ~~g~~~-------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~ 127 (355)
+||.-+ -........+.|..+++|.|+..|-+-..+
T Consensus 113 lpgiiegakdgkgrg~qviavartcnli~~vld~~kp~~hk~~ 155 (358)
T KOG1487|consen 113 LPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKPLSHKKI 155 (358)
T ss_pred CcchhcccccCCCCccEEEEEeecccEEEEEeeccCcccHHHH
Confidence 999632 122344557889999999999998776554
No 392
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.43 E-value=3.6e-07 Score=89.28 Aligned_cols=90 Identities=21% Similarity=0.205 Sum_probs=67.6
Q ss_pred EEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHH
Q psy15725 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGER 311 (355)
Q Consensus 232 ~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~ 311 (355)
+.+|||+|++.|..++..++..+|++++|+|+++....++.. .+..+.. .++|+++++||+|+.. .
T Consensus 71 l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e-~i~~l~~---~~vpiIVv~NK~Dl~~----------~ 136 (590)
T TIGR00491 71 LLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQE-ALNILRM---YKTPFVVAANKIDRIP----------G 136 (590)
T ss_pred EEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHH-HHHHHHH---cCCCEEEEEECCCccc----------h
Confidence 789999999999999999999999999999998754333321 1222222 5799999999999853 2
Q ss_pred HHhhcCcEEEEecCCCCCCHHHHH
Q psy15725 312 KAKELNVMFIETSAKAGYNVKQLF 335 (355)
Q Consensus 312 ~~~~~~~~~~~~SA~~~~gv~~l~ 335 (355)
++...+++++++||+.+.++..-+
T Consensus 137 ~~~~~~~~f~e~sak~~~~v~~~~ 160 (590)
T TIGR00491 137 WRSHEGRPFMESFSKQEIQVQQNL 160 (590)
T ss_pred hhhccCchHHHHHHhhhHHHHHHH
Confidence 334556789999999988765443
No 393
>KOG1489|consensus
Probab=98.42 E-value=1.6e-06 Score=75.88 Aligned_cols=107 Identities=21% Similarity=0.250 Sum_probs=77.7
Q ss_pred EEEEeCCCccccccc-------ccccccCCcEEEEEEeCCCc---ccHHHHHHHHHHHHhhc--CCCceEEEEeeCCCCC
Q psy15725 232 LQLWDTAGQERFRSL-------IPSYIRDSTVAVVVYDITNA---NSFHQTSKWIDDVRTER--GSDVIIMLVGNKTDLS 299 (355)
Q Consensus 232 ~~i~D~~g~~~~~~~-------~~~~~~~~~~vi~v~d~~~~---~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~ 299 (355)
+++.|.||--+-..+ .-.+++.|+..+||+|++.. +.++.+.....++.-+. ..+.|.++|+||+|+.
T Consensus 246 ~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 246 ITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred eEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 788999994333222 22456789999999999998 88888877776665443 3789999999999985
Q ss_pred CcccCCHHHHHHHHhhcCc-EEEEecCCCCCCHHHHHHHHHHH
Q psy15725 300 DKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAA 341 (355)
Q Consensus 300 ~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~~gv~~l~~~l~~~ 341 (355)
+.+. ....++++...- .++++||++++|++++++.|...
T Consensus 326 eae~---~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 326 EAEK---NLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred hHHH---HHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhhc
Confidence 2211 112445555443 59999999999999999988754
No 394
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.41 E-value=9.5e-07 Score=84.67 Aligned_cols=104 Identities=20% Similarity=0.189 Sum_probs=66.3
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE 307 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~ 307 (355)
+...+.++||||++.|.......+..+|++++|+|++....-+....+ .+.... .-.|++++.||+|+.+.+.-...
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~--~l~~~l-g~~~iIvvvNKiD~~~~~~~~~~ 181 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS--FIATLL-GIKHLVVAVNKMDLVDYSEEVFE 181 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH--HHHHHh-CCCceEEEEEeeccccchhHHHH
Confidence 355778999999988865544556899999999999876432221111 122221 12479999999998643221111
Q ss_pred H----HHHHHhhc----CcEEEEecCCCCCCHHHH
Q psy15725 308 E----GERKAKEL----NVMFIETSAKAGYNVKQL 334 (355)
Q Consensus 308 ~----~~~~~~~~----~~~~~~~SA~~~~gv~~l 334 (355)
+ ...+.+.. ..+++++||++|.|++++
T Consensus 182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 1 11222222 368999999999999763
No 395
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.41 E-value=7e-07 Score=76.55 Aligned_cols=84 Identities=13% Similarity=0.153 Sum_probs=47.8
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
++|+++|..|+||||++|.+++....... . ....+...........++ ..+.++|||
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~-----------------~----~~~~~t~~~~~~~~~~~g--~~v~VIDTP 57 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSG-----------------S----SAKSVTQECQKYSGEVDG--RQVTVIDTP 57 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS-------------------T----TTSS--SS-EEEEEEETT--EEEEEEE--
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeec-----------------c----ccCCcccccceeeeeecc--eEEEEEeCC
Confidence 58999999999999999999996532210 0 000111122223334444 568999999
Q ss_pred Ccccccc--------cc---cccccCccEEEEEEECCC
Q psy15725 94 GQERFRS--------LI---PSYIRDSTVAVVVYDITN 120 (355)
Q Consensus 94 g~~~~~~--------~~---~~~~~~~d~ii~v~d~~~ 120 (355)
|..+-.. +. .....+.+++++|+.+.+
T Consensus 58 Gl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r 95 (212)
T PF04548_consen 58 GLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGR 95 (212)
T ss_dssp SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB
T ss_pred CCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCc
Confidence 9532111 11 112346899999999983
No 396
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.41 E-value=1.2e-06 Score=82.65 Aligned_cols=102 Identities=23% Similarity=0.210 Sum_probs=66.6
Q ss_pred eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCH--
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST-- 306 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~-- 306 (355)
...+.++||||++.|.......+..+|++++|+|++.+..-+....+. +.... ...+++++.||+|+.+.+.-..
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~--~~~~~-~~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY--IASLL-GIRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH--HHHHc-CCCcEEEEEEecccccchHHHHHH
Confidence 457789999999988765556778999999999998765433222221 22221 1345899999999864321111
Q ss_pred --HHHHHHHhhcC---cEEEEecCCCCCCHHH
Q psy15725 307 --EEGERKAKELN---VMFIETSAKAGYNVKQ 333 (355)
Q Consensus 307 --~~~~~~~~~~~---~~~~~~SA~~~~gv~~ 333 (355)
.+...+.+..+ ++++++||++|.|+++
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 11222233333 4799999999999986
No 397
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=6e-07 Score=80.89 Aligned_cols=89 Identities=18% Similarity=0.282 Sum_probs=54.2
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCC-CCceeeeecccceeeecccCCCCCccccccceeeeeee--------ee--ecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKT--------MY--LED 82 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~--------~~--~~~ 82 (355)
+++.+||.||||||||+|+++..... ..|+-+. ..|..|.-+.+.- .. -..
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~T------------------IePN~Giv~v~d~rl~~L~~~~~c~~k~ 64 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCT------------------IEPNVGVVYVPDCRLDELAEIVKCPPKI 64 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCccc------------------ccCCeeEEecCchHHHHHHHhcCCCCcE
Confidence 68999999999999999999997632 2332221 1222222111110 00 011
Q ss_pred cEEEEEEEecCCc----ccccccccc---cccCccEEEEEEECCC
Q psy15725 83 RTVRLQLWDTAGQ----ERFRSLIPS---YIRDSTVAVVVYDITN 120 (355)
Q Consensus 83 ~~~~~~i~D~~g~----~~~~~~~~~---~~~~~d~ii~v~d~~~ 120 (355)
....+.++|.+|. +.=+.+-.. -+|++|+++.|+|+..
T Consensus 65 ~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 65 RPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred EeeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 2457899999885 222333333 3679999999999874
No 398
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.36 E-value=7.3e-07 Score=81.12 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=36.7
Q ss_pred CcEEEEEEEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725 82 DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121 (355)
Q Consensus 82 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 121 (355)
.+.+.+.+||++|+...+..|..++.+++++++|+|+++-
T Consensus 158 ~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~ 197 (317)
T cd00066 158 IKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEY 197 (317)
T ss_pred ecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhc
Confidence 3467899999999999999999999999999999999984
No 399
>KOG0461|consensus
Probab=98.35 E-value=3.1e-06 Score=74.85 Aligned_cols=100 Identities=20% Similarity=0.255 Sum_probs=60.0
Q ss_pred CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeee-------ec
Q psy15725 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY-------LE 81 (355)
Q Consensus 9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-------~~ 81 (355)
.+..++++.++|+-.+|||||..++..-.-... | +..+......+..+.....+. ..
T Consensus 3 ~~p~n~N~GiLGHvDSGKTtLarals~~~STaA--------------F--Dk~pqS~eRgiTLDLGFS~~~v~~parLpq 66 (522)
T KOG0461|consen 3 SPPSNLNLGILGHVDSGKTTLARALSELGSTAA--------------F--DKHPQSTERGITLDLGFSTMTVLSPARLPQ 66 (522)
T ss_pred CCCceeeeeeEeeccCchHHHHHHHHhhccchh--------------h--ccCCcccccceeEeecceeeecccccccCc
Confidence 345679999999999999999999876221000 0 111111112222222211111 23
Q ss_pred CcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchh
Q psy15725 82 DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 124 (355)
Q Consensus 82 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~ 124 (355)
+...++.++|+||+...-+.......-.|..++|+|+...-.-
T Consensus 67 ~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~Qt 109 (522)
T KOG0461|consen 67 GEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQT 109 (522)
T ss_pred cccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhccccc
Confidence 5568899999999865544444444556899999999875433
No 400
>KOG0077|consensus
Probab=98.35 E-value=6.2e-07 Score=70.87 Aligned_cols=116 Identities=16% Similarity=0.233 Sum_probs=91.5
Q ss_pred cccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCccc
Q psy15725 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQ 303 (355)
Q Consensus 225 ~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~ 303 (355)
..+.++..+.+|.+|+..-+..|..++..++++++.+|+-+.+.+.+....++.+.... -..+|+++.+||+|.+..
T Consensus 59 l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a-- 136 (193)
T KOG0077|consen 59 LSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA-- 136 (193)
T ss_pred heecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc--
Confidence 45678889999999999999999999999999999999999999998888777765433 278999999999998533
Q ss_pred CCHHHHHH---HHhh-----------cC---cEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725 304 VSTEEGER---KAKE-----------LN---VMFIETSAKAGYNVKQLFRRVAAAL 342 (355)
Q Consensus 304 v~~~~~~~---~~~~-----------~~---~~~~~~SA~~~~gv~~l~~~l~~~i 342 (355)
.+.++... +.+. .+ ..+|.||...+.|--+.|.|+..+|
T Consensus 137 ~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 137 ASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred ccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhhhc
Confidence 33333221 1111 11 3589999999999999999998776
No 401
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.35 E-value=1.9e-06 Score=70.10 Aligned_cols=83 Identities=17% Similarity=0.097 Sum_probs=55.9
Q ss_pred cEEEEEEeCCCcccHHHHHHHHH-HHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725 255 TVAVVVYDITNANSFHQTSKWID-DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333 (355)
Q Consensus 255 ~~vi~v~d~~~~~s~~~~~~~~~-~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~ 333 (355)
|.+++|+|++++.+... .++. .... ..++|+++|+||+|+.+...+. .....+....+.+++++||+++.|+++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~--~~~~p~IiVlNK~Dl~~~~~~~-~~~~~~~~~~~~~ii~vSa~~~~gi~~ 75 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIK--EKGKKLILVLNKADLVPKEVLR-KWLAYLRHSYPTIPFKISATNGQGIEK 75 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHh--cCCCCEEEEEechhcCCHHHHH-HHHHHHHhhCCceEEEEeccCCcChhh
Confidence 67899999988765443 2333 1211 1579999999999996443221 111123233346789999999999999
Q ss_pred HHHHHHHHc
Q psy15725 334 LFRRVAAAL 342 (355)
Q Consensus 334 l~~~l~~~i 342 (355)
+++.|.+..
T Consensus 76 L~~~i~~~~ 84 (155)
T cd01849 76 KESAFTKQT 84 (155)
T ss_pred HHHHHHHHh
Confidence 999997754
No 402
>KOG0705|consensus
Probab=98.34 E-value=4.5e-07 Score=84.41 Aligned_cols=151 Identities=20% Similarity=0.375 Sum_probs=107.8
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
..+.+|+.|||..++|||+|++|++.+.|.....|.- ....+.+..++....+.+
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~-------------------------~~~kkE~vv~gqs~lLli 81 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEG-------------------------GRFKKEVVVDGQSHLLLI 81 (749)
T ss_pred ccchhheeeeecccCCceeeeeeeccceeccccCCcC-------------------------ccceeeEEeeccceEeee
Confidence 3577999999999999999999999977765543322 122344445677777888
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS 169 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (355)
.|.+|... ..+...+|++||||.+.+.++|+.+..+..++...+.
T Consensus 82 rdeg~~~~-----aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~------------------------------ 126 (749)
T KOG0705|consen 82 RDEGGHPD-----AQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRN------------------------------ 126 (749)
T ss_pred ecccCCch-----hhhhhhccceEEEEEeccccCHHHHHHHHhhcccccc------------------------------
Confidence 88888322 3567789999999999999999999888777754321
Q ss_pred cccccccccCCCccEEEEEeecCCC--Ccccceehhhhhhhhh-ccCeEEEEeeeeeccccceE
Q psy15725 170 KWIDDVRTERGSDVIIMLVGNKTDL--SDKRQVSTEEGERKAK-ELNVMFIETSAKAGYNVKQV 230 (355)
Q Consensus 170 ~~~~~~~~~~~~~~piilv~nK~D~--~~~~~v~~~~~~~~~~-~~~~~~~~~sa~~~~~v~~i 230 (355)
...+|+++++++.-. ..++.+......+++. ...+.+++..+.++.++...
T Consensus 127 ----------r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rv 180 (749)
T KOG0705|consen 127 ----------ISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERV 180 (749)
T ss_pred ----------cccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHH
Confidence 347888888886533 2334555555555444 45678888888888887654
No 403
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.34 E-value=9.6e-07 Score=81.03 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=41.5
Q ss_pred ccccceeeeeeeeeecCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725 66 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121 (355)
Q Consensus 66 ~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 121 (355)
.||.|+....- ..+...+.+||+||+...+..|..++.++++++||+|+++-
T Consensus 169 ~~T~Gi~~~~f----~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~ 220 (342)
T smart00275 169 VPTTGIQETAF----IVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEY 220 (342)
T ss_pred CCccceEEEEE----EECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECccc
Confidence 45666543322 23446789999999999999999999999999999999973
No 404
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.33 E-value=2.9e-06 Score=82.01 Aligned_cols=100 Identities=16% Similarity=0.286 Sum_probs=56.8
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~ 92 (355)
.++|+++|.+||||||++|++++...... +.+.. .|.. ........++ ..+.++||
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~v-----------------ss~~~---~TTr--~~ei~~~idG--~~L~VIDT 173 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFST-----------------DAFGM---GTTS--VQEIEGLVQG--VKIRVIDT 173 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccc-----------------cCCCC---CceE--EEEEEEEECC--ceEEEEEC
Confidence 47999999999999999999998542111 11101 1111 1111222233 57999999
Q ss_pred CCccccc-------cc---cccccc--CccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725 93 AGQERFR-------SL---IPSYIR--DSTVAVVVYDITNANSFHQTSKWIDDVRT 136 (355)
Q Consensus 93 ~g~~~~~-------~~---~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~ 136 (355)
||..... .+ ...++. ..|++|+|+.++.......-..+++.+..
T Consensus 174 PGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~ 229 (763)
T TIGR00993 174 PGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITD 229 (763)
T ss_pred CCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHH
Confidence 9975431 11 111223 57999999988643332222344454443
No 405
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.32 E-value=1.3e-06 Score=80.42 Aligned_cols=165 Identities=18% Similarity=0.220 Sum_probs=109.9
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeee--e---cCcEEEE
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY--L---EDRTVRL 87 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~--~---~~~~~~~ 87 (355)
--|..++.+-..|||||..|++...-.- .......+++ ++.+-+... |++.....+. + ++....+
T Consensus 9 IRNFsIIAHIDHGKSTLaDRlle~t~~~-------~~Rem~~Q~L-DsMdiERER--GITIKaq~v~l~Yk~~~g~~Y~l 78 (603)
T COG0481 9 IRNFSIIAHIDHGKSTLADRLLELTGGL-------SEREMRAQVL-DSMDIERER--GITIKAQAVRLNYKAKDGETYVL 78 (603)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhcCc-------ChHHHHHHhh-hhhhhHhhc--CceEEeeEEEEEEEeCCCCEEEE
Confidence 3578999999999999999998843211 1111111111 222222222 3333322222 2 3467899
Q ss_pred EEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcccc
Q psy15725 88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ 167 (355)
Q Consensus 88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (355)
+++||||+-+|.-.....+..|.|+++|+|++..-.-+.+...|-.+.+
T Consensus 79 nlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~------------------------------- 127 (603)
T COG0481 79 NLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN------------------------------- 127 (603)
T ss_pred EEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc-------------------------------
Confidence 9999999999999998999999999999999987666666666666643
Q ss_pred CccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCe---EEEEeeeeeccccceEEEEE
Q psy15725 168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV---MFIETSAKAGYNVKQVRLQL 234 (355)
Q Consensus 168 ~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~---~~~~~sa~~~~~v~~i~~~i 234 (355)
+.-++-|.||.|++... .+....+..+-++. ....+|+++|.+++.+.-.|
T Consensus 128 --------------~LeIiPViNKIDLP~Ad--pervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~I 181 (603)
T COG0481 128 --------------NLEIIPVLNKIDLPAAD--PERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAI 181 (603)
T ss_pred --------------CcEEEEeeecccCCCCC--HHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHH
Confidence 77899999999997542 12223333344443 57889999999988764333
No 406
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.31 E-value=1.1e-06 Score=70.33 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhHHHHHhhhcC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDS 37 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~ 37 (355)
+++++|.+|||||||+|++.+..
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~ 107 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKK 107 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999999854
No 407
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.29 E-value=1.9e-06 Score=74.09 Aligned_cols=83 Identities=16% Similarity=0.126 Sum_probs=49.4
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHH--HHHHhh--cCc--EEEEecC
Q psy15725 252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEG--ERKAKE--LNV--MFIETSA 325 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~--~~~~~~--~~~--~~~~~SA 325 (355)
.-+|.+++|.-+.....++-++.-+-+ ++-++|.||.|....+....+.. ..+... .+| |++.+||
T Consensus 141 ~~aD~~v~v~~Pg~GD~iQ~~KaGimE--------iaDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA 212 (266)
T PF03308_consen 141 DMADTVVLVLVPGLGDEIQAIKAGIME--------IADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSA 212 (266)
T ss_dssp TTSSEEEEEEESSTCCCCCTB-TTHHH--------H-SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBT
T ss_pred HhcCeEEEEecCCCccHHHHHhhhhhh--------hccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEe
Confidence 347888888877655554433222222 35689999999643322222212 222221 223 8999999
Q ss_pred CCCCCHHHHHHHHHHHc
Q psy15725 326 KAGYNVKQLFRRVAAAL 342 (355)
Q Consensus 326 ~~~~gv~~l~~~l~~~i 342 (355)
.++.||+++++.|.+.-
T Consensus 213 ~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 213 LEGEGIDELWEAIDEHR 229 (266)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998753
No 408
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.28 E-value=3.6e-06 Score=68.76 Aligned_cols=108 Identities=19% Similarity=0.268 Sum_probs=67.1
Q ss_pred EEEEEeCCCcc----------ccccccccccc---CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCC
Q psy15725 231 RLQLWDTAGQE----------RFRSLIPSYIR---DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 297 (355)
Q Consensus 231 ~~~i~D~~g~~----------~~~~~~~~~~~---~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 297 (355)
.+.++|++|.. .+......++. ..+.+++++|.+...+.... .....+.. .+.|+++++||+|
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~l~~---~~~~vi~v~nK~D 121 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDL-EMLDWLEE---LGIPFLVVLTKAD 121 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHH-HHHHHHHH---cCCCEEEEEEchh
Confidence 67789999832 23333333333 45688889988766432221 12222332 3689999999999
Q ss_pred CCCcccCCH--HHHHHHHh--hcCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725 298 LSDKRQVST--EEGERKAK--ELNVMFIETSAKAGYNVKQLFRRVAAAL 342 (355)
Q Consensus 298 l~~~~~v~~--~~~~~~~~--~~~~~~~~~SA~~~~gv~~l~~~l~~~i 342 (355)
+.++..... .......+ ....+++++||+++.|+++++++|.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 122 KLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred cCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 864432211 11111222 2346899999999999999999998764
No 409
>PLN03126 Elongation factor Tu; Provisional
Probab=98.28 E-value=5.6e-06 Score=79.17 Aligned_cols=112 Identities=15% Similarity=0.138 Sum_probs=76.3
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCce-EEEEeeCCCCCCcccCCH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKRQVST 306 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~~ 306 (355)
+...+.++|+||++.|.......+..+|++++|+|+.+...-+. .+++..+.. .++| ++++.||+|+.+.+....
T Consensus 142 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~ 217 (478)
T PLN03126 142 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLE 217 (478)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCeEEEEEecccccCHHHHHH
Confidence 34567899999999887766666778999999999987754333 233333333 4788 888999999975332211
Q ss_pred ---HHHHHHHhhc-----CcEEEEecCCCCCC------------------HHHHHHHHHHHcC
Q psy15725 307 ---EEGERKAKEL-----NVMFIETSAKAGYN------------------VKQLFRRVAAALP 343 (355)
Q Consensus 307 ---~~~~~~~~~~-----~~~~~~~SA~~~~g------------------v~~l~~~l~~~i~ 343 (355)
.+...+.... .++++++||.+|.+ +.++++.|.+.++
T Consensus 218 ~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~ 280 (478)
T PLN03126 218 LVELEVRELLSSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIP 280 (478)
T ss_pred HHHHHHHHHHHhcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCC
Confidence 1223333332 46899999998742 5678888887654
No 410
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.26 E-value=2.2e-06 Score=69.81 Aligned_cols=26 Identities=27% Similarity=0.529 Sum_probs=23.1
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDS 37 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~ 37 (355)
..++|+++|.+|||||||+|++.+..
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~ 126 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKK 126 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCC
Confidence 46789999999999999999998844
No 411
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.24 E-value=2.5e-06 Score=83.64 Aligned_cols=97 Identities=22% Similarity=0.214 Sum_probs=72.0
Q ss_pred EEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHH
Q psy15725 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGER 311 (355)
Q Consensus 232 ~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~ 311 (355)
+.+|||||++.|..++...+..+|++++|+|+++...-+.. ..+..+.. .++|+++++||+|+.. .
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~-e~i~~~~~---~~vpiIvviNK~D~~~----------~ 138 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTI-EAINILKR---RKTPFVVAANKIDRIP----------G 138 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHH-HHHHHHHH---cCCCEEEEEECcCCch----------h
Confidence 57999999999999888888999999999999874322221 11222222 5899999999999741 1
Q ss_pred HHhhcCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725 312 KAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342 (355)
Q Consensus 312 ~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i 342 (355)
+....+.+++++|++++.++.+.|+.+...+
T Consensus 139 ~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev 169 (586)
T PRK04004 139 WKSTEDAPFLESIEKQSQRVQQELEEKLYEL 169 (586)
T ss_pred hhhhcCchHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2233457899999999999988887776554
No 412
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.23 E-value=5.1e-06 Score=76.94 Aligned_cols=111 Identities=22% Similarity=0.226 Sum_probs=79.3
Q ss_pred cccceEEEEEEeCCCcccccc--------cccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCC
Q psy15725 225 YNVKQVRLQLWDTAGQERFRS--------LIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 296 (355)
Q Consensus 225 ~~v~~i~~~i~D~~g~~~~~~--------~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~ 296 (355)
.+++.+.+.++||+|-..-.. .....+..+|.+++++|.+.+.+-.+. ..+. ....++|+++|.||.
T Consensus 260 i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~-~~~~----~~~~~~~~i~v~NK~ 334 (454)
T COG0486 260 INLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDL-ALIE----LLPKKKPIIVVLNKA 334 (454)
T ss_pred EEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhH-HHHH----hcccCCCEEEEEech
Confidence 456678899999999554332 233567899999999999986432221 2222 222689999999999
Q ss_pred CCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 297 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 297 Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
|+.++...... .. ..+.+++.+||++|+|++.+.+.|.+.+...
T Consensus 335 DL~~~~~~~~~---~~--~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 335 DLVSKIELESE---KL--ANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred hcccccccchh---hc--cCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 99765442211 11 1234799999999999999999999988776
No 413
>KOG0460|consensus
Probab=98.23 E-value=9.8e-06 Score=71.63 Aligned_cols=117 Identities=20% Similarity=0.212 Sum_probs=83.6
Q ss_pred EEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCce-EEEEeeCCCCCCc-c--cCCHH
Q psy15725 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDK-R--QVSTE 307 (355)
Q Consensus 232 ~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~-~--~v~~~ 307 (355)
+.=.|+||+..|....-.-....|+.|+|+..+|...-+.-+.. -+..+ -+++ +++..||.|+.++ + +.-+.
T Consensus 119 YaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHl--LLArQ--VGV~~ivvfiNKvD~V~d~e~leLVEm 194 (449)
T KOG0460|consen 119 YAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHL--LLARQ--VGVKHIVVFINKVDLVDDPEMLELVEM 194 (449)
T ss_pred cccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHH--HHHHH--cCCceEEEEEecccccCCHHHHHHHHH
Confidence 44568999999988887888889999999999987754432221 12222 4666 8899999999833 2 23345
Q ss_pred HHHHHHhhcC-----cEEEEecCCC---CC-------CHHHHHHHHHHHcCCCCCCCCCC
Q psy15725 308 EGERKAKELN-----VMFIETSAKA---GY-------NVKQLFRRVAAALPGMDSTENKP 352 (355)
Q Consensus 308 ~~~~~~~~~~-----~~~~~~SA~~---~~-------gv~~l~~~l~~~i~~~~~~~~~~ 352 (355)
+.+++...+| +|++..||+. |. -|.+|++++-.+||-+....++|
T Consensus 195 E~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~~p 254 (449)
T KOG0460|consen 195 EIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLDKP 254 (449)
T ss_pred HHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccccCCC
Confidence 5666666655 6899998873 31 27889999999999887666654
No 414
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.22 E-value=2.3e-06 Score=70.55 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDS 37 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~ 37 (355)
.++++++|.+|||||||+|++++..
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~ 141 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSR 141 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcc
Confidence 4799999999999999999999854
No 415
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.20 E-value=3.7e-05 Score=69.16 Aligned_cols=105 Identities=12% Similarity=0.158 Sum_probs=59.8
Q ss_pred CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeee----------
Q psy15725 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTM---------- 78 (355)
Q Consensus 9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~---------- 78 (355)
+....+.+.+.|+-+.|||||+-.|+.+..+...-.+ +.|+.....+ .-....-+.....+
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~t--------R~~ldv~kHE-verGlsa~iS~~v~Gf~dgk~~rl 183 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGAT--------RSYLDVQKHE-VERGLSADISLRVYGFDDGKVVRL 183 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcch--------hhhhhhhhHH-HhhccccceeEEEEEecCCceEee
Confidence 3556899999999999999999999887654432221 1111000000 00000001111111
Q ss_pred -----------eecCcEEEEEEEecCCcccccccccccc--cCccEEEEEEECCCcc
Q psy15725 79 -----------YLEDRTVRLQLWDTAGQERFRSLIPSYI--RDSTVAVVVYDITNAN 122 (355)
Q Consensus 79 -----------~~~~~~~~~~i~D~~g~~~~~~~~~~~~--~~~d~ii~v~d~~~~~ 122 (355)
.++.-+-.+.++||.|++.|-......+ .+.|-.++++.+++..
T Consensus 184 knPld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~ 240 (527)
T COG5258 184 KNPLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGV 240 (527)
T ss_pred cCcccHHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCc
Confidence 0111223568999999998866443333 4679999999998853
No 416
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.19 E-value=4.9e-06 Score=68.79 Aligned_cols=88 Identities=18% Similarity=0.143 Sum_probs=60.3
Q ss_pred cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCC
Q psy15725 248 PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA 327 (355)
Q Consensus 248 ~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~ 327 (355)
...+.++|.+++++|.+.+....+. ...+ .. .++|+++|+||+|+.+...+ ....++.+..+..++.+||++
T Consensus 14 ~~~i~~aD~il~v~D~~~~~~~~~~-~i~~----~~-~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~iSa~~ 85 (171)
T cd01856 14 KEKLKLVDLVIEVRDARIPLSSRNP-LLEK----IL-GNKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLFVNAKS 85 (171)
T ss_pred HHHHhhCCEEEEEeeccCccCcCCh-hhHh----Hh-cCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEEEECCC
Confidence 4567889999999999876542221 1112 11 36899999999998643221 111122233345789999999
Q ss_pred CCCHHHHHHHHHHHcC
Q psy15725 328 GYNVKQLFRRVAAALP 343 (355)
Q Consensus 328 ~~gv~~l~~~l~~~i~ 343 (355)
+.|++++.+.|...++
T Consensus 86 ~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 86 GKGVKKLLKAAKKLLK 101 (171)
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999999999999865
No 417
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.18 E-value=7.4e-06 Score=77.99 Aligned_cols=112 Identities=21% Similarity=0.183 Sum_probs=73.4
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCccc---HH---HHHHHHHHHHhhcCCCce-EEEEeeCCCCC
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS---FH---QTSKWIDDVRTERGSDVI-IMLVGNKTDLS 299 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 299 (355)
.+...+.++|+||+..|.......+..+|++++|+|++.... ++ ...+....+.. .++| +|++.||.|..
T Consensus 82 ~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 82 TPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDDK 158 (446)
T ss_pred cCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEccccc
Confidence 356788999999999998777777889999999999987531 10 11122222322 5777 78999999953
Q ss_pred C--cccCC----HHHHHHHHhhc-----CcEEEEecCCCCCCHHH------------HHHHHHHH
Q psy15725 300 D--KRQVS----TEEGERKAKEL-----NVMFIETSAKAGYNVKQ------------LFRRVAAA 341 (355)
Q Consensus 300 ~--~~~v~----~~~~~~~~~~~-----~~~~~~~SA~~~~gv~~------------l~~~l~~~ 341 (355)
. ..+-. ..+...+.... .++++++||.+|.|+.+ |+++|...
T Consensus 159 ~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~ 223 (446)
T PTZ00141 159 TVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTL 223 (446)
T ss_pred cchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCC
Confidence 2 11111 11122222222 36899999999999964 77777654
No 418
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.16 E-value=7.3e-06 Score=81.80 Aligned_cols=103 Identities=22% Similarity=0.178 Sum_probs=65.9
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCH-
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST- 306 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~- 306 (355)
+...+.++||||++.|.......+..+|++++|+|++....-+... ....+... ...|++++.||+|+.+...-..
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e-~~~~~~~~--~~~~iivvvNK~D~~~~~~~~~~ 178 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRR-HSFIASLL--GIRHVVLAVNKMDLVDYDQEVFD 178 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHH-HHHHHHHh--CCCeEEEEEEecccccchhHHHH
Confidence 3446779999999887655555678999999999997765322221 12222221 2367999999999864221111
Q ss_pred ---HHHHHHHhhcC---cEEEEecCCCCCCHHH
Q psy15725 307 ---EEGERKAKELN---VMFIETSAKAGYNVKQ 333 (355)
Q Consensus 307 ---~~~~~~~~~~~---~~~~~~SA~~~~gv~~ 333 (355)
.+...+....+ ++++++||++|.|+++
T Consensus 179 ~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 179 EIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 11222233334 4799999999999973
No 419
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.15 E-value=2.8e-06 Score=68.54 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDS 37 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~ 37 (355)
-.++++|++|||||||+|+|....
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999999999854
No 420
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.13 E-value=5.7e-06 Score=67.27 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.7
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDS 37 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~ 37 (355)
...+++++|.+|+|||||+|++.+..
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~ 125 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRH 125 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999998643
No 421
>PRK12288 GTPase RsgA; Reviewed
Probab=98.11 E-value=5e-06 Score=76.26 Aligned_cols=23 Identities=35% Similarity=0.680 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHhhhcC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDS 37 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~ 37 (355)
.++++|.+|||||||+|+|++..
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred CEEEECCCCCCHHHHHHHhcccc
Confidence 37999999999999999999854
No 422
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=3.2e-06 Score=77.38 Aligned_cols=155 Identities=18% Similarity=0.150 Sum_probs=98.4
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+.|+-.|+-..|||||+..+++..- +...+.....+.++...-.. +..+..+.|+|+|
T Consensus 1 mii~t~GhidHgkT~L~~altg~~~--------------------d~l~EekKRG~TiDlg~~y~--~~~d~~~~fIDvp 58 (447)
T COG3276 1 MIIGTAGHIDHGKTTLLKALTGGVT--------------------DRLPEEKKRGITIDLGFYYR--KLEDGVMGFIDVP 58 (447)
T ss_pred CeEEEeeeeeccchhhhhhhccccc--------------------ccchhhhhcCceEeeeeEec--cCCCCceEEeeCC
Confidence 3578899999999999999988432 22333333333333333332 2333489999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcc---hhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNAN---SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
|++++-..+-..+...|.+++|+|.++.- +-+.+.- ++.
T Consensus 59 gh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~i-Ldl------------------------------------- 100 (447)
T COG3276 59 GHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLI-LDL------------------------------------- 100 (447)
T ss_pred CcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHH-HHh-------------------------------------
Confidence 99999888888888999999999997633 3333211 111
Q ss_pred ccccccccCCCccEE-EEEeecCCCCcccceeh--hhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCC
Q psy15725 171 WIDDVRTERGSDVII-MLVGNKTDLSDKRQVST--EEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTA 238 (355)
Q Consensus 171 ~~~~~~~~~~~~~pi-ilv~nK~D~~~~~~v~~--~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~ 238 (355)
-+++- ++|.+|+|..++..+.. .+..+.......+++.+|+.++.+++++...+.+.+
T Consensus 101 ----------lgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 101 ----------LGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred ----------cCCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhh
Confidence 14444 89999999876532221 111111122245778889999998887665555444
No 423
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.08 E-value=1.1e-05 Score=64.39 Aligned_cols=76 Identities=20% Similarity=0.209 Sum_probs=51.3
Q ss_pred ccccCCcEEEEEEeCCCcccHHH--HHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCC
Q psy15725 249 SYIRDSTVAVVVYDITNANSFHQ--TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 326 (355)
Q Consensus 249 ~~~~~~~~vi~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~ 326 (355)
..+..+|++++|+|++++.+..+ +.+++... ..++|+++|+||+|+.++..+ .......+..+..++++||+
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~~~k~~iivlNK~DL~~~~~~--~~~~~~~~~~~~~ii~iSa~ 80 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----DPRKKNILLLNKADLLTEEQR--KAWAEYFKKEGIVVVFFSAL 80 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----cCCCcEEEEEechhcCCHHHH--HHHHHHHHhcCCeEEEEEec
Confidence 34678999999999988765432 23333322 147899999999998644322 12233444556789999999
Q ss_pred CCCC
Q psy15725 327 AGYN 330 (355)
Q Consensus 327 ~~~g 330 (355)
++.+
T Consensus 81 ~~~~ 84 (141)
T cd01857 81 KENA 84 (141)
T ss_pred CCCc
Confidence 8764
No 424
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.08 E-value=7.3e-06 Score=67.76 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=23.7
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCC
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSF 38 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~ 38 (355)
..++++++|.+|||||||+|++.+..+
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~ 140 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKV 140 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 457999999999999999999998553
No 425
>PRK01889 GTPase RsgA; Reviewed
Probab=98.08 E-value=1.6e-05 Score=73.50 Aligned_cols=84 Identities=14% Similarity=0.174 Sum_probs=61.2
Q ss_pred cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHh-hcCcEEEEecCCCC
Q psy15725 250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK-ELNVMFIETSAKAG 328 (355)
Q Consensus 250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~SA~~~ 328 (355)
.++++|.+++|+++........++.++..+.. .++|.++|+||+||.++.. .....+.. ..+.+++++||+++
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~vSa~~g 182 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAVSALDG 182 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEEECCCC
Confidence 36889999999999755555556666666665 5788899999999974311 11111211 35679999999999
Q ss_pred CCHHHHHHHHH
Q psy15725 329 YNVKQLFRRVA 339 (355)
Q Consensus 329 ~gv~~l~~~l~ 339 (355)
.|++++..+|.
T Consensus 183 ~gl~~L~~~L~ 193 (356)
T PRK01889 183 EGLDVLAAWLS 193 (356)
T ss_pred ccHHHHHHHhh
Confidence 99999999885
No 426
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.08 E-value=1.4e-05 Score=66.84 Aligned_cols=73 Identities=26% Similarity=0.602 Sum_probs=66.4
Q ss_pred ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCceEEEEeeCCCCC
Q psy15725 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLS 299 (355)
Q Consensus 226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~ 299 (355)
+...+.+.+|||+|++.|..+++.++.+++++++|||++++.+++.+ ..|++.+.... .+.|++||+||+|+.
T Consensus 49 ~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~ 122 (182)
T cd04172 49 DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLR 122 (182)
T ss_pred CCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhh
Confidence 34568899999999999999999999999999999999999999997 78999987765 689999999999985
No 427
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.06 E-value=5e-05 Score=70.00 Aligned_cols=122 Identities=18% Similarity=0.233 Sum_probs=88.4
Q ss_pred cccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcc--
Q psy15725 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR-- 302 (355)
Q Consensus 225 ~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-- 302 (355)
..-+...+.|+||||+..|-......+.-.|++++++|......-+.- -..+.... .+++-|+|.||+|....+
T Consensus 63 v~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTr-FVlkKAl~---~gL~PIVVvNKiDrp~Arp~ 138 (603)
T COG1217 63 VNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTR-FVLKKALA---LGLKPIVVINKIDRPDARPD 138 (603)
T ss_pred eecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchh-hhHHHHHH---cCCCcEEEEeCCCCCCCCHH
Confidence 344568899999999999999988889999999999999876654431 12233333 578888999999986543
Q ss_pred cCCHHHHHHHH------hhcCcEEEEecCCCC----------CCHHHHHHHHHHHcCCCCCCCC
Q psy15725 303 QVSTEEGERKA------KELNVMFIETSAKAG----------YNVKQLFRRVAAALPGMDSTEN 350 (355)
Q Consensus 303 ~v~~~~~~~~~------~~~~~~~~~~SA~~~----------~gv~~l~~~l~~~i~~~~~~~~ 350 (355)
.+-.+-...+. .++.+|++..||+.| .+...||+.|++++|.+.....
T Consensus 139 ~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d 202 (603)
T COG1217 139 EVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLD 202 (603)
T ss_pred HHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCCC
Confidence 22222222221 345689999999965 4788999999999999875433
No 428
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.05 E-value=1.1e-05 Score=72.59 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=23.5
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDS 37 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~ 37 (355)
..++++++|.+|||||||+|++.+..
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~ 145 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKK 145 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCC
Confidence 45899999999999999999999854
No 429
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.05 E-value=8.7e-06 Score=72.72 Aligned_cols=26 Identities=31% Similarity=0.551 Sum_probs=23.5
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDS 37 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~ 37 (355)
..++++++|.+|||||||+|++.+..
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~ 142 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKK 142 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999999754
No 430
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.05 E-value=6.5e-06 Score=69.31 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDS 37 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~ 37 (355)
..+++++|.+|||||||+|+|.+..
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999999854
No 431
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.03 E-value=1.5e-05 Score=71.27 Aligned_cols=91 Identities=23% Similarity=0.258 Sum_probs=62.9
Q ss_pred ccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCC
Q psy15725 247 IPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 326 (355)
Q Consensus 247 ~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~ 326 (355)
....+..+|++++|+|++.+.+... .++.... .++|+++|.||+|+.++... .......+..+.+++++||+
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~~~~vi~iSa~ 86 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLADPAVT--KQWLKYFEEKGIKALAINAK 86 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccCCHHHH--HHHHHHHHHcCCeEEEEECC
Confidence 3455778999999999987655332 1222222 36899999999998543221 11112223345689999999
Q ss_pred CCCCHHHHHHHHHHHcCCC
Q psy15725 327 AGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 327 ~~~gv~~l~~~l~~~i~~~ 345 (355)
++.|++++++.|.+.++..
T Consensus 87 ~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 87 KGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred CcccHHHHHHHHHHHHHHh
Confidence 9999999999999888654
No 432
>KOG0467|consensus
Probab=98.03 E-value=2e-05 Score=76.50 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=76.4
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
....-+|+++.+-..|||||...|+..+- ...+.+.|+-.|+ . ...+ ..+.|++-....+.+-.+++.+++
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asng--vis~rlagkirfl----d-~red--eq~rgitmkss~is~~~~~~~~nl 76 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNG--VISSRLAGKIRFL----D-TRED--EQTRGITMKSSAISLLHKDYLINL 76 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhcc--Eechhhccceeec----c-ccch--hhhhceeeeccccccccCceEEEE
Confidence 34457899999999999999999988552 2233333333332 1 1111 224455555555556567789999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhh
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 125 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~ 125 (355)
+|+||+-+|........+-+|++++.+|+...-..+
T Consensus 77 idspghvdf~sevssas~l~d~alvlvdvvegv~~q 112 (887)
T KOG0467|consen 77 IDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQ 112 (887)
T ss_pred ecCCCccchhhhhhhhhhhcCCcEEEEeeccccchh
Confidence 999999999999999999999999999998854333
No 433
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.02 E-value=9.7e-05 Score=65.65 Aligned_cols=94 Identities=16% Similarity=0.056 Sum_probs=54.6
Q ss_pred EEEEEEeCCCccccccc-c-----------cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCC
Q psy15725 230 VRLQLWDTAGQERFRSL-I-----------PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 297 (355)
Q Consensus 230 i~~~i~D~~g~~~~~~~-~-----------~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 297 (355)
+-+.++||+|....... . ...-...+.+++|+|.+.. .+.+. +.....+.. -+.-+++||.|
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~---~~~g~IlTKlD 228 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV---GLTGIILTKLD 228 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC---CCCEEEEEccC
Confidence 45668899985432211 0 1112347889999998643 22332 223332211 24689999999
Q ss_pred CCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHH
Q psy15725 298 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335 (355)
Q Consensus 298 l~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~ 335 (355)
... .. ..+.......+.|+.+++ +|++++++-
T Consensus 229 e~~--~~--G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 229 GTA--KG--GIILSIAYELKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred CCC--Cc--cHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence 632 22 233444455678999988 888887763
No 434
>KOG0085|consensus
Probab=98.02 E-value=1e-07 Score=79.48 Aligned_cols=120 Identities=16% Similarity=0.234 Sum_probs=85.1
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCC----------CcccHHHHHHHHHHHHhhc-CCCceEEEEeeC
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT----------NANSFHQTSKWIDDVRTER-GSDVIIMLVGNK 295 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK 295 (355)
..++.+.+.|.+|+...+..|-+++.+...++|.+.++ +.+.+++-...+.-+..+. ..+.++|+.+||
T Consensus 196 l~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNK 275 (359)
T KOG0085|consen 196 LQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNK 275 (359)
T ss_pred hhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEech
Confidence 45667789999999999999999999988888876553 3445555555666665544 378999999999
Q ss_pred CCCCCcc----------------cCCHHHHHHHHhh----cC------cEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725 296 TDLSDKR----------------QVSTEEGERKAKE----LN------VMFIETSAKAGYNVKQLFRRVAAALPGMD 346 (355)
Q Consensus 296 ~Dl~~~~----------------~v~~~~~~~~~~~----~~------~~~~~~SA~~~~gv~~l~~~l~~~i~~~~ 346 (355)
.|+.++. +...+-++++.-. .+ +.-.+++|..-+||.-+|.++.+.|...+
T Consensus 276 kDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~ 352 (359)
T KOG0085|consen 276 KDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 352 (359)
T ss_pred hhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence 9985321 1222333333211 11 35679999999999999999988876543
No 435
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.00 E-value=5.5e-05 Score=67.42 Aligned_cols=104 Identities=20% Similarity=0.260 Sum_probs=74.8
Q ss_pred cccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCce-EEEEeeCCCCCCccc
Q psy15725 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKRQ 303 (355)
Q Consensus 225 ~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~ 303 (355)
...++-.+.|.||||+++|-..+-.-...|+++|+++|.....- +...-+..+... .+++ +++..||.||.+.++
T Consensus 81 FsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl--~QTrRHs~I~sL--LGIrhvvvAVNKmDLvdy~e 156 (431)
T COG2895 81 FSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVL--EQTRRHSFIASL--LGIRHVVVAVNKMDLVDYSE 156 (431)
T ss_pred cccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhH--HHhHHHHHHHHH--hCCcEEEEEEeeecccccCH
Confidence 34456678899999999999888888899999999999865432 222333334433 3444 999999999986543
Q ss_pred CC----HHHHHHHHhhcC---cEEEEecCCCCCCHH
Q psy15725 304 VS----TEEGERKAKELN---VMFIETSAKAGYNVK 332 (355)
Q Consensus 304 v~----~~~~~~~~~~~~---~~~~~~SA~~~~gv~ 332 (355)
-. ..+...++.+++ ..++++||..|.||-
T Consensus 157 ~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 157 EVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 22 233455677777 379999999999984
No 436
>KOG0070|consensus
Probab=97.99 E-value=2.1e-05 Score=63.73 Aligned_cols=159 Identities=18% Similarity=0.323 Sum_probs=117.3
Q ss_pred cCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccc-----eEEEEEEeCCCccccccccccccc
Q psy15725 178 ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK-----QVRLQLWDTAGQERFRSLIPSYIR 252 (355)
Q Consensus 178 ~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~-----~i~~~i~D~~g~~~~~~~~~~~~~ 252 (355)
.......++++| ++.+.+.+-....... .++.+....|.|++ ++.+.+||.+|++.++.+|..|+.
T Consensus 13 ~~~~e~~IlmlG----LD~AGKTTILykLk~~-----E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~ 83 (181)
T KOG0070|consen 13 FGKKEMRILMVG----LDAAGKTTILYKLKLG-----EIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQ 83 (181)
T ss_pred cCcceEEEEEEe----ccCCCceeeeEeeccC-----CcccCCCccccceeEEEEcceEEEEEecCCCcccccchhhhcc
Confidence 345678889998 4333332211111111 12222444455554 457889999999999999999999
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC-CCceEEEEeeCCCCCCc---ccCCHHHHHHHHhhcCcEEEEecCCCC
Q psy15725 253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDK---RQVSTEEGERKAKELNVMFIETSAKAG 328 (355)
Q Consensus 253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~---~~v~~~~~~~~~~~~~~~~~~~SA~~~ 328 (355)
+.+++|||+|++|...+.+..+.+..+..... .+.|+++.+||.|+... .+++........+...|.+..|||.+|
T Consensus 84 ~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G 163 (181)
T KOG0070|consen 84 NTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISG 163 (181)
T ss_pred CCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeecccccc
Confidence 99999999999999999998887777766553 68999999999998633 334444444445556789999999999
Q ss_pred CCHHHHHHHHHHHcCCC
Q psy15725 329 YNVKQLFRRVAAALPGM 345 (355)
Q Consensus 329 ~gv~~l~~~l~~~i~~~ 345 (355)
.|+.|.++||.+.+.+.
T Consensus 164 ~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 164 EGLYEGLDWLSNNLKKR 180 (181)
T ss_pred ccHHHHHHHHHHHHhcc
Confidence 99999999999988764
No 437
>KOG0410|consensus
Probab=97.97 E-value=8.2e-06 Score=71.71 Aligned_cols=99 Identities=19% Similarity=0.258 Sum_probs=60.1
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+.--|+|||..|+|||||+++|+.....+. +.+-.+.+||. +..+++.+ ..+.+.|
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~-----------------drLFATLDpT~------h~a~Lpsg-~~vlltD 232 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPN-----------------DRLFATLDPTL------HSAHLPSG-NFVLLTD 232 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCcc-----------------chhheeccchh------hhccCCCC-cEEEEee
Confidence 445699999999999999999997443222 11122223332 22233332 2467788
Q ss_pred cCCc-cc--------ccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 92 TAGQ-ER--------FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 92 ~~g~-~~--------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
|-|- +. |.... .....+|.++.|+|+++|+.=++...-+.-+.
T Consensus 233 TvGFisdLP~~LvaAF~ATL-eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~ 284 (410)
T KOG0410|consen 233 TVGFISDLPIQLVAAFQATL-EEVAEADLLLHVVDISHPNAEEQRETVLHVLN 284 (410)
T ss_pred chhhhhhCcHHHHHHHHHHH-HHHhhcceEEEEeecCCccHHHHHHHHHHHHH
Confidence 8873 22 22222 23568999999999999876555544444443
No 438
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.97 E-value=0.00023 Score=64.58 Aligned_cols=94 Identities=16% Similarity=0.119 Sum_probs=53.6
Q ss_pred eEEEEEEeCCCccccc--------ccc---cc-cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCC
Q psy15725 229 QVRLQLWDTAGQERFR--------SLI---PS-YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 296 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~--------~~~---~~-~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~ 296 (355)
.+-+.++||+|..... .+. .. .-...+.+++|+|++... ..+.+ .....+ .--+.-+|.||.
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~---~~~~~giIlTKl 269 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHE---AVGLTGIILTKL 269 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHh---hCCCCEEEEECC
Confidence 3456688888853321 111 11 112356788999988542 23322 122221 123567999999
Q ss_pred CCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHH
Q psy15725 297 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 334 (355)
Q Consensus 297 Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l 334 (355)
|.. . .. ..........+.|+.+++ +|++++++
T Consensus 270 D~t-~-~~--G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 270 DGT-A-KG--GVVFAIADELGIPIKFIG--VGEGIDDL 301 (318)
T ss_pred CCC-C-Cc--cHHHHHHHHHCCCEEEEe--CCCChhhC
Confidence 943 2 22 233445566688999999 88888776
No 439
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.96 E-value=3.9e-05 Score=63.87 Aligned_cols=73 Identities=27% Similarity=0.595 Sum_probs=66.1
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSD 300 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~ 300 (355)
...+.+.+|||+|++.|..+++.++.+++++++|||++++.+++++ ..|+..+.... .+.|+++|+||+|+.+
T Consensus 46 ~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~ 119 (178)
T cd04131 46 EQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRT 119 (178)
T ss_pred CEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhc
Confidence 3568899999999999999999999999999999999999999995 78999988765 6899999999999853
No 440
>PRK13796 GTPase YqeH; Provisional
Probab=97.95 E-value=3.7e-05 Score=71.41 Aligned_cols=82 Identities=29% Similarity=0.424 Sum_probs=56.6
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHH----HHHhhcCc---EEEEecCC
Q psy15725 254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGE----RKAKELNV---MFIETSAK 326 (355)
Q Consensus 254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~----~~~~~~~~---~~~~~SA~ 326 (355)
...+++|+|+.+... .|...+.+.. .+.|+++|+||+|+... ........ .+.+..++ .++++||+
T Consensus 70 ~~lIv~VVD~~D~~~-----s~~~~L~~~~-~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk 142 (365)
T PRK13796 70 DALVVNVVDIFDFNG-----SWIPGLHRFV-GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKELGLRPVDVVLISAQ 142 (365)
T ss_pred CcEEEEEEECccCCC-----chhHHHHHHh-CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhcCCCcCcEEEEECC
Confidence 348999999877542 2444444433 37899999999999642 22222222 23444554 68999999
Q ss_pred CCCCHHHHHHHHHHHc
Q psy15725 327 AGYNVKQLFRRVAAAL 342 (355)
Q Consensus 327 ~~~gv~~l~~~l~~~i 342 (355)
++.|++++++.|.+..
T Consensus 143 ~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 143 KGHGIDELLEAIEKYR 158 (365)
T ss_pred CCCCHHHHHHHHHHhc
Confidence 9999999999998764
No 441
>KOG1954|consensus
Probab=97.95 E-value=4.4e-05 Score=68.35 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=24.7
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNT 41 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~ 41 (355)
=|+++|.-..||||+++-|+.+.|++.
T Consensus 60 mill~GqyStGKTtfi~yLle~dypg~ 86 (532)
T KOG1954|consen 60 MILLVGQYSTGKTTFIRYLLEQDYPGL 86 (532)
T ss_pred eEEEEeccccchhHHHHHHHhCCCCcc
Confidence 489999999999999999999998764
No 442
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=97.95 E-value=3.1e-05 Score=65.20 Aligned_cols=73 Identities=34% Similarity=0.616 Sum_probs=65.3
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSD 300 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~ 300 (355)
...+.+.+||++|++.|+.+++.++.+++++|+|||++++.+++.+. .|...+.... .++|+++|+||.|+.+
T Consensus 48 ~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~ 121 (191)
T cd01875 48 GRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRN 121 (191)
T ss_pred CEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhc
Confidence 35688999999999999999999999999999999999999999996 5888876654 6899999999999954
No 443
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.95 E-value=2.3e-05 Score=70.37 Aligned_cols=72 Identities=21% Similarity=0.293 Sum_probs=52.7
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCC-ccccccceeeeeeeeeecCcEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
.-.++|+++|+.|.|||||+|.|++....... ....... ...+++.+......+.-++....+.+
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~--------------~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~v 86 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDET--------------EIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTV 86 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCC--------------CccCcccccCCcceEEEeeeeeeecCCeEEEEEE
Confidence 45689999999999999999999997433221 0011222 24577777777777777788889999
Q ss_pred EecCCcc
Q psy15725 90 WDTAGQE 96 (355)
Q Consensus 90 ~D~~g~~ 96 (355)
+||||-.
T Consensus 87 IDtpGfG 93 (373)
T COG5019 87 IDTPGFG 93 (373)
T ss_pred eccCCcc
Confidence 9999953
No 444
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.94 E-value=4.5e-05 Score=66.47 Aligned_cols=69 Identities=17% Similarity=0.197 Sum_probs=55.1
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 300 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 300 (355)
+...+.++||+|+..|...+..++..+|++++|+|.++....+ ...+...+.. .++|+++++||+|+..
T Consensus 62 ~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~~~~~~---~~~P~iivvNK~D~~~ 130 (237)
T cd04168 62 EDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQ-TRILWRLLRK---LNIPTIIFVNKIDRAG 130 (237)
T ss_pred CCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHHH---cCCCEEEEEECccccC
Confidence 4568899999999998888888999999999999998876532 2344444443 5799999999999864
No 445
>KOG1547|consensus
Probab=97.92 E-value=2.3e-05 Score=66.02 Aligned_cols=68 Identities=18% Similarity=0.353 Sum_probs=49.2
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCC-ccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
.++|+|||.+|.|||||+|.++..+...... ..... .+..|+.+....+.+.-++-.+++.++|
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~---------------~~~~~~p~pkT~eik~~thvieE~gVklkltviD 110 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSS---------------SDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVID 110 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccC---------------CCcccCcccceEEEEeeeeeeeecceEEEEEEec
Confidence 5899999999999999999998865432200 11111 3344666666677777777788999999
Q ss_pred cCCc
Q psy15725 92 TAGQ 95 (355)
Q Consensus 92 ~~g~ 95 (355)
|||-
T Consensus 111 TPGf 114 (336)
T KOG1547|consen 111 TPGF 114 (336)
T ss_pred CCCc
Confidence 9995
No 446
>KOG2655|consensus
Probab=97.91 E-value=2.7e-05 Score=70.48 Aligned_cols=71 Identities=18% Similarity=0.326 Sum_probs=49.7
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
-.++++++|++|.|||||+|.|+...+.+.... .........|..+......+.-++..+.+.++|
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~--------------~~~~~~~~~t~~i~~~~~~iee~g~~l~Ltvid 85 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREV--------------PGASERIKETVEIESTKVEIEENGVKLNLTVID 85 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCccc--------------CCcccCccccceeeeeeeeecCCCeEEeeEEec
Confidence 349999999999999999999998754332100 011222334666666666666677788999999
Q ss_pred cCCcc
Q psy15725 92 TAGQE 96 (355)
Q Consensus 92 ~~g~~ 96 (355)
|||-.
T Consensus 86 tPGfG 90 (366)
T KOG2655|consen 86 TPGFG 90 (366)
T ss_pred cCCCc
Confidence 99953
No 447
>KOG0088|consensus
Probab=97.91 E-value=1.3e-05 Score=62.77 Aligned_cols=53 Identities=47% Similarity=0.884 Sum_probs=49.7
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 280 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~ 280 (355)
....+.||||+|++.|..+-+-||.+++++++|||++|..+|+.+..|..++.
T Consensus 60 ~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr 112 (218)
T KOG0088|consen 60 CRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELR 112 (218)
T ss_pred ceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHH
Confidence 46678999999999999999999999999999999999999999999998874
No 448
>KOG2486|consensus
Probab=97.91 E-value=2.7e-05 Score=67.24 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=23.5
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDS 37 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~ 37 (355)
-.+..++++|..|||||+|||-++.-+
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k 160 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVK 160 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhh
Confidence 456899999999999999999998843
No 449
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.89 E-value=3.7e-05 Score=69.11 Aligned_cols=90 Identities=21% Similarity=0.221 Sum_probs=62.6
Q ss_pred cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCC
Q psy15725 248 PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA 327 (355)
Q Consensus 248 ~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~ 327 (355)
...+..+|++++|+|...+.+... .++.... .++|+++|+||+|+.+.... .....+.+..+.+++++||++
T Consensus 19 ~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~~--~~~~~~~~~~~~~vi~vSa~~ 90 (287)
T PRK09563 19 KENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEVT--KKWIEYFEEQGIKALAINAKK 90 (287)
T ss_pred HHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHHH--HHHHHHHHHcCCeEEEEECCC
Confidence 455778999999999987765332 2222222 26899999999998543211 111222234457899999999
Q ss_pred CCCHHHHHHHHHHHcCCC
Q psy15725 328 GYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 328 ~~gv~~l~~~l~~~i~~~ 345 (355)
+.|++++++.|...++..
T Consensus 91 ~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 91 GQGVKKILKAAKKLLKEK 108 (287)
T ss_pred cccHHHHHHHHHHHHHHH
Confidence 999999999998887654
No 450
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.88 E-value=2.2e-05 Score=71.48 Aligned_cols=28 Identities=32% Similarity=0.541 Sum_probs=24.5
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCC
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSF 38 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~ 38 (355)
...++++|||-||||||||+|+|.+...
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~ 157 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKV 157 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccc
Confidence 3458899999999999999999999653
No 451
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.87 E-value=3.6e-05 Score=68.39 Aligned_cols=97 Identities=19% Similarity=0.156 Sum_probs=64.2
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccC-CH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV-ST 306 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v-~~ 306 (355)
....+.++||||...+...+...+..+|++++|+|..+...-+. ......+.. .++|++++.||+|+...+.- ..
T Consensus 62 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~a~~~~~~ 137 (270)
T cd01886 62 KDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTGADFFRVV 137 (270)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHH
Confidence 35678899999998888888889999999999999987654332 233333333 57999999999998643210 01
Q ss_pred HHHHHHHhhcCc-EEEEecCCCC
Q psy15725 307 EEGERKAKELNV-MFIETSAKAG 328 (355)
Q Consensus 307 ~~~~~~~~~~~~-~~~~~SA~~~ 328 (355)
.+........-+ .++++||..+
T Consensus 138 ~~l~~~l~~~~~~~~~Pisa~~~ 160 (270)
T cd01886 138 EQIREKLGANPVPLQLPIGEEDD 160 (270)
T ss_pred HHHHHHhCCCceEEEeccccCCC
Confidence 111111111112 5788898754
No 452
>KOG0463|consensus
Probab=97.87 E-value=0.00035 Score=62.84 Aligned_cols=108 Identities=17% Similarity=0.214 Sum_probs=57.5
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceee-----------eecccceeeecc-----cCCCCCccccccceeee
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQAT-----------IVGKTSLITRFM-----YDSFDNTYQATIGIDFL 74 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~-----------~~~~~~~~~~~~-----~~~~~~~~~~t~~~~~~ 74 (355)
.-.++|+|||.-.+|||||+--|+.+..+..--.+ -.|.|+.+.--. .+...+.++|. +....
T Consensus 131 F~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~H-g~~Ld 209 (641)
T KOG0463|consen 131 FIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPH-GHNLD 209 (641)
T ss_pred ceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCC-CCccc
Confidence 45689999999999999999888876654421111 012222211100 11122222222 21222
Q ss_pred eeeeeecCcEEEEEEEecCCccccccccccccc--CccEEEEEEECCC
Q psy15725 75 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR--DSTVAVVVYDITN 120 (355)
Q Consensus 75 ~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~ii~v~d~~~ 120 (355)
...+ .....-.+.|+|+.|+++|-....-.+- -.|.-++++-++-
T Consensus 210 WvkI-ce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNa 256 (641)
T KOG0463|consen 210 WVKI-CEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANA 256 (641)
T ss_pred ceee-ccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccc
Confidence 1111 1222345789999999988765543332 3466677766543
No 453
>KOG0093|consensus
Probab=97.87 E-value=2e-05 Score=61.05 Aligned_cols=56 Identities=41% Similarity=0.866 Sum_probs=51.2
Q ss_pred cccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHH
Q psy15725 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 280 (355)
Q Consensus 225 ~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~ 280 (355)
.+...+.++||||.|++.|+.+.-.++++++++|++||+++.+++..+..|...+.
T Consensus 65 r~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIk 120 (193)
T KOG0093|consen 65 RSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIK 120 (193)
T ss_pred ecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHhe
Confidence 44567999999999999999999999999999999999999999999988887764
No 454
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.86 E-value=7.9e-05 Score=64.35 Aligned_cols=90 Identities=24% Similarity=0.204 Sum_probs=53.4
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhc--CCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYD--SFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ 88 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 88 (355)
.+-.-|+|+|++++|||+|+|++++. .+.-. .....-|.|+-.+...... +....+.
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~--------------------~~~~~~T~gi~~~~~~~~~-~~~~~v~ 63 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVM--------------------DTSQQTTKGIWMWSVPFKL-GKEHAVL 63 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEec--------------------CCCCCCccceEEEeccccC-CCcceEE
Confidence 35567999999999999999999995 22111 1111223333322222211 2456899
Q ss_pred EEecCCcccccc------cccccccC--ccEEEEEEECCCc
Q psy15725 89 LWDTAGQERFRS------LIPSYIRD--STVAVVVYDITNA 121 (355)
Q Consensus 89 i~D~~g~~~~~~------~~~~~~~~--~d~ii~v~d~~~~ 121 (355)
++||+|...... .....+.. +|.+|+..+....
T Consensus 64 ~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 64 LLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred EEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCccc
Confidence 999999754322 11222333 7888888777654
No 455
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.86 E-value=3.7e-05 Score=70.44 Aligned_cols=89 Identities=17% Similarity=0.093 Sum_probs=52.5
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCC-CC-CceeeeecccceeeecccCCCCCccccccceeeeee--------eeee-cC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSF-DN-TYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSK--------TMYL-ED 82 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~--------~~~~-~~ 82 (355)
+++.+||.|+||||||+|.+++... .. .|+.+ +..|..|.-.... .+.. .-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypft------------------Ti~p~~g~v~v~d~r~d~L~~~~~~~~~ 64 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFT------------------TIEPNAGVVNPSDPRLDLLAIYIKPEKV 64 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCC------------------CCCCceeEEEechhHHHHHHHHhCCcCc
Confidence 6899999999999999999998764 21 22111 0111111111000 0000 01
Q ss_pred cEEEEEEEecCCccc-------ccccccccccCccEEEEEEECCC
Q psy15725 83 RTVRLQLWDTAGQER-------FRSLIPSYIRDSTVAVVVYDITN 120 (355)
Q Consensus 83 ~~~~~~i~D~~g~~~-------~~~~~~~~~~~~d~ii~v~d~~~ 120 (355)
....+.+.|.||... .....-..++.+|+++.|+++.+
T Consensus 65 ~~a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 65 PPTTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred CCceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 224678999999633 11223345789999999999864
No 456
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.86 E-value=3.6e-05 Score=63.89 Aligned_cols=72 Identities=39% Similarity=0.696 Sum_probs=65.8
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSD 300 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~ 300 (355)
..+.+.|||++|++.|..+++.++.+++++++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+
T Consensus 47 ~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~ 119 (176)
T cd04133 47 NTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRD 119 (176)
T ss_pred EEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhcc
Confidence 568899999999999999999999999999999999999999998 68999987655 5899999999999954
No 457
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=97.85 E-value=3.1e-05 Score=65.78 Aligned_cols=51 Identities=47% Similarity=0.920 Sum_probs=47.0
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 278 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~ 278 (355)
..+.+.+||++|++.|+.+++.++.+++++++|||+++..+++.+..|+..
T Consensus 47 ~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~ 97 (202)
T cd04120 47 KKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKM 97 (202)
T ss_pred EEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999998888654
No 458
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.85 E-value=5.1e-05 Score=60.27 Aligned_cols=112 Identities=49% Similarity=0.789 Sum_probs=86.8
Q ss_pred eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHH-HHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI-DDVRTERGSDVIIMLVGNKTDLSDKRQVSTE 307 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~ 307 (355)
...+.+||++|...+...+...+..++++++|+|++++.+......|. ..+......++|+++++||+|+.........
T Consensus 44 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~ 123 (157)
T cd00882 44 KVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEE 123 (157)
T ss_pred EEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHH
Confidence 567889999998888887788889999999999999998888877663 2222333378999999999998654433322
Q ss_pred H-HHHHHhhcCcEEEEecCCCCCCHHHHHHHHHH
Q psy15725 308 E-GERKAKELNVMFIETSAKAGYNVKQLFRRVAA 340 (355)
Q Consensus 308 ~-~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~ 340 (355)
. .........++++++||.++.|+++++++|.+
T Consensus 124 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 157 (157)
T cd00882 124 ELAEQLAKELGVPYFETSAKTGENVEELFEELAE 157 (157)
T ss_pred HHHHHHHhhcCCcEEEEecCCCCChHHHHHHHhC
Confidence 2 23344455689999999999999999999863
No 459
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=97.85 E-value=3.8e-05 Score=64.56 Aligned_cols=53 Identities=45% Similarity=0.850 Sum_probs=48.4
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 279 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i 279 (355)
...+.+.+||++|++.|..++..++.+++++++|||++++.+++.+..|++.+
T Consensus 52 ~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i 104 (189)
T cd04121 52 GRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEI 104 (189)
T ss_pred CEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999998887665
No 460
>PRK09866 hypothetical protein; Provisional
Probab=97.84 E-value=4.5e-05 Score=73.80 Aligned_cols=106 Identities=18% Similarity=0.254 Sum_probs=66.3
Q ss_pred EEEEEEecCCcccc-----cccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccc
Q psy15725 85 VRLQLWDTAGQERF-----RSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSF 159 (355)
Q Consensus 85 ~~~~i~D~~g~~~~-----~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
.++.++||||...- ...+...+..+|+|+||+|..+..+... ....+.++..
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~---------------------- 286 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV---------------------- 286 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc----------------------
Confidence 47899999997432 2234457889999999999987544433 1223333321
Q ss_pred cccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhh------cc-CeEEEEeeeeeccccceEEE
Q psy15725 160 HHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK------EL-NVMFIETSAKAGYNVKQVRL 232 (355)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~------~~-~~~~~~~sa~~~~~v~~i~~ 232 (355)
....|+++|+||+|..+...-..+....+.. .. ...++.+|+..+.+++.+..
T Consensus 287 --------------------~K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLd 346 (741)
T PRK09866 287 --------------------GQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARH 346 (741)
T ss_pred --------------------CCCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Confidence 1136999999999985422211222333221 11 34689999999999887543
Q ss_pred E
Q psy15725 233 Q 233 (355)
Q Consensus 233 ~ 233 (355)
.
T Consensus 347 e 347 (741)
T PRK09866 347 E 347 (741)
T ss_pred H
Confidence 3
No 461
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=97.83 E-value=5.1e-05 Score=64.32 Aligned_cols=116 Identities=30% Similarity=0.556 Sum_probs=101.8
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCH
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST 306 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~ 306 (355)
...+.+.|||++|++.|..++..++.+++++++|||+++..+++.+..|+..+.... .++|+++|+||+|+.. +.+..
T Consensus 41 ~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~ 118 (200)
T smart00176 41 RGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKA 118 (200)
T ss_pred CEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCH
Confidence 356889999999999999999999999999999999999999999999999998765 6899999999999853 34444
Q ss_pred HHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 307 EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 307 ~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
+. ..+++..++++++|||++|.||+++|++|++.+.+.
T Consensus 119 ~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 119 KS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 33 466777889999999999999999999999988764
No 462
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.83 E-value=4e-05 Score=62.21 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=23.4
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDS 37 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~ 37 (355)
...+++++|.+|||||||+|++.+..
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~ 124 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKL 124 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccc
Confidence 45789999999999999999999854
No 463
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.83 E-value=0.00018 Score=60.70 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHhhh
Q psy15725 15 KLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~ 35 (355)
-|++||+.||||||.+-++..
T Consensus 3 vi~lvGptGvGKTTt~aKLAa 23 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAA 23 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHH
Confidence 589999999999999999876
No 464
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.82 E-value=9.2e-05 Score=65.70 Aligned_cols=70 Identities=23% Similarity=0.262 Sum_probs=52.1
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCc
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 301 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 301 (355)
..+.+.+|||+|+..|.......+..+|++++|+|+++...... ..+...... .++|++++.||+|+...
T Consensus 69 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~-~~i~~~~~~---~~~P~iivvNK~D~~~a 138 (267)
T cd04169 69 RDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQT-RKLFEVCRL---RGIPIITFINKLDREGR 138 (267)
T ss_pred CCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHH-HHHHHHHHh---cCCCEEEEEECCccCCC
Confidence 46788999999998887766667889999999999987644222 233333322 58999999999998543
No 465
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.80 E-value=3e-05 Score=68.48 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHhhhc
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYD 36 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~ 36 (355)
..+++|++|||||||+|+|...
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCch
Confidence 5789999999999999999873
No 466
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=97.80 E-value=2.5e-05 Score=64.47 Aligned_cols=154 Identities=19% Similarity=0.205 Sum_probs=95.0
Q ss_pred EEcCCCCChhHHHHHhhhcCCC-CCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCCcc
Q psy15725 18 FLGEQSVGKTSLITRFMYDSFD-NTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 96 (355)
Q Consensus 18 vvG~~~vGKStLl~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 96 (355)
++|++|||||||++++.+.... ..+ ...|..... ....++. ...+.+|||||..
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~----------------------~~~t~~~~~--~~~~~~~-~~~~~i~DtpG~~ 55 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANY----------------------PFTTLEPNL--GVVEVPD-GARIQVADIPGLI 55 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCC----------------------CceeecCcc--eEEEcCC-CCeEEEEeccccc
Confidence 5899999999999999985430 110 011111111 1122220 3568999999973
Q ss_pred c----ccccc---cccccCccEEEEEEECCCc------chhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccC
Q psy15725 97 R----FRSLI---PSYIRDSTVAVVVYDITNA------NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHAN 163 (355)
Q Consensus 97 ~----~~~~~---~~~~~~~d~ii~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (355)
+ .+.+. ...++.+|++++|+|+++. .+++....|...+........
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 114 (176)
T cd01881 56 EGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETI--------------------- 114 (176)
T ss_pred hhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhH---------------------
Confidence 2 22222 2346789999999999998 577777777777753210000
Q ss_pred ccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceE
Q psy15725 164 SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230 (355)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i 230 (355)
.....+.|+++|+||+|+.....................++.+|+..+.+++.+
T Consensus 115 -------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l 168 (176)
T cd01881 115 -------------LGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDEL 168 (176)
T ss_pred -------------HHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHH
Confidence 000137999999999999655443332222333445567899999988877653
No 467
>PRK14974 cell division protein FtsY; Provisional
Probab=97.76 E-value=0.00026 Score=64.59 Aligned_cols=93 Identities=16% Similarity=0.137 Sum_probs=52.4
Q ss_pred EEEEEeCCCcccccc-cccc---c--ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccC
Q psy15725 231 RLQLWDTAGQERFRS-LIPS---Y--IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV 304 (355)
Q Consensus 231 ~~~i~D~~g~~~~~~-~~~~---~--~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v 304 (355)
.+.++||+|...... +... . ....+.+++|.|..... +........... --+--+++||.|.. ...
T Consensus 224 DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---d~~~~a~~f~~~---~~~~giIlTKlD~~--~~~ 295 (336)
T PRK14974 224 DVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---DAVEQAREFNEA---VGIDGVILTKVDAD--AKG 295 (336)
T ss_pred CEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---hHHHHHHHHHhc---CCCCEEEEeeecCC--CCc
Confidence 366888888543211 1110 0 12456788999886543 222222222221 12467899999963 222
Q ss_pred CHHHHHHHHhhcCcEEEEecCCCCCCHHHHH
Q psy15725 305 STEEGERKAKELNVMFIETSAKAGYNVKQLF 335 (355)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~ 335 (355)
. -+...+...+.|+.+++ +|++++++.
T Consensus 296 G--~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 296 G--AALSIAYVIGKPILFLG--VGQGYDDLI 322 (336)
T ss_pred c--HHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence 2 33444455678999988 799998774
No 468
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=7.9e-05 Score=67.99 Aligned_cols=107 Identities=21% Similarity=0.247 Sum_probs=73.7
Q ss_pred cccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcc---cHHH--HHHHHHHHHhhcCCCce-EEEEeeCCCC
Q psy15725 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN---SFHQ--TSKWIDDVRTERGSDVI-IMLVGNKTDL 298 (355)
Q Consensus 225 ~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~---s~~~--~~~~~~~i~~~~~~~~p-iilv~nK~Dl 298 (355)
...+.+.++|+|+||+..|.......+..+|..|+|+|+++.+ .+.. ....+-.+... .++. +|++.||.|+
T Consensus 80 fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t--lGi~~lIVavNKMD~ 157 (428)
T COG5256 80 FETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART--LGIKQLIVAVNKMDL 157 (428)
T ss_pred eecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHh--cCCceEEEEEEcccc
Confidence 4456778999999999999988888899999999999998774 2111 12233334444 3444 8999999999
Q ss_pred CCcccCCHHHHH----HHHhhcC-----cEEEEecCCCCCCHHH
Q psy15725 299 SDKRQVSTEEGE----RKAKELN-----VMFIETSAKAGYNVKQ 333 (355)
Q Consensus 299 ~~~~~v~~~~~~----~~~~~~~-----~~~~~~SA~~~~gv~~ 333 (355)
.+-++-+.++.. .+.+..| ++++++||.+|.|+.+
T Consensus 158 v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 158 VSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred cccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 753322222221 1334444 5699999999999864
No 469
>PRK13796 GTPase YqeH; Provisional
Probab=97.74 E-value=4.7e-05 Score=70.67 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDS 37 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~ 37 (355)
..++++||.+|||||||+|+|+...
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhc
Confidence 3479999999999999999998743
No 470
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.72 E-value=8.6e-05 Score=74.26 Aligned_cols=111 Identities=16% Similarity=0.265 Sum_probs=80.3
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcc--cCC
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR--QVS 305 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~--~v~ 305 (355)
....+.+|||||++.|..++...+..+|++++|+|+++....+....+ ..+. ..++|+++++||+|+.... .+.
T Consensus 293 ~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I-~~~k---~~~iPiIVViNKiDl~~~~~e~v~ 368 (742)
T CHL00189 293 ENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAI-NYIQ---AANVPIIVAINKIDKANANTERIK 368 (742)
T ss_pred CceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHH-HHHH---hcCceEEEEEECCCccccCHHHHH
Confidence 357889999999999999999999999999999999886544333222 2222 2589999999999986422 111
Q ss_pred HHHHH--HHHhhcC--cEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725 306 TEEGE--RKAKELN--VMFIETSAKAGYNVKQLFRRVAAAL 342 (355)
Q Consensus 306 ~~~~~--~~~~~~~--~~~~~~SA~~~~gv~~l~~~l~~~i 342 (355)
.+... .+...++ ++++++||++|.||+++|++|....
T Consensus 369 ~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 369 QQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred HHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 11100 0112223 6999999999999999999998865
No 471
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.72 E-value=0.00012 Score=64.88 Aligned_cols=128 Identities=20% Similarity=0.236 Sum_probs=83.2
Q ss_pred EEEEeeeeecccc-ceEEEEEEeCCCc-----ccc----cccccccccCCcEEEEEEeCCCcc--cHHHHHHHHHHHHhh
Q psy15725 215 MFIETSAKAGYNV-KQVRLQLWDTAGQ-----ERF----RSLIPSYIRDSTVAVVVYDITNAN--SFHQTSKWIDDVRTE 282 (355)
Q Consensus 215 ~~~~~sa~~~~~v-~~i~~~i~D~~g~-----~~~----~~~~~~~~~~~~~vi~v~d~~~~~--s~~~~~~~~~~i~~~ 282 (355)
||..-+...|.-. .....+++||||- ++. +.-+-.+..-.++|+|.||.+... +.+.....++++...
T Consensus 199 PFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~ 278 (346)
T COG1084 199 PFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL 278 (346)
T ss_pred CccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh
Confidence 4444444433332 3447899999991 111 111222334577899999987655 666667778888776
Q ss_pred cCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 283 RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 283 ~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
- ..|+++|.||.|+...+......+. +....+.....+|+..+.+++.+-+.+.......
T Consensus 279 f--~~p~v~V~nK~D~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 279 F--KAPIVVVINKIDIADEEKLEEIEAS-VLEEGGEEPLKISATKGCGLDKLREEVRKTALEP 338 (346)
T ss_pred c--CCCeEEEEecccccchhHHHHHHHH-HHhhccccccceeeeehhhHHHHHHHHHHHhhch
Confidence 4 4899999999998755554333332 2223334578899999999999998888875443
No 472
>KOG1491|consensus
Probab=97.71 E-value=9.2e-05 Score=65.72 Aligned_cols=103 Identities=16% Similarity=0.137 Sum_probs=55.9
Q ss_pred CCcceeEEEEEcCCCCChhHHHHHhhhcCCCC-CceeeeecccceeeecccCCCCCccccccceeeeeeeeeec-CcEEE
Q psy15725 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDN-TYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-DRTVR 86 (355)
Q Consensus 9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~ 86 (355)
......+|.+||.|+||||||+|.++...... .|+-+.. ..+..+.-+ |.-.++.....+... .....
T Consensus 16 R~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TI-dPn~a~V~v---------~d~Rfd~l~~~Y~~~~~vpa~ 85 (391)
T KOG1491|consen 16 RDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTI-DPNEARVEV---------PDSRFDLLCPIYGPKSKVPAF 85 (391)
T ss_pred CCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCccee-ccccceeec---------CchHHHHHHHhcCCcceeeee
Confidence 34456899999999999999999999976432 2221110 000000000 000011111111111 12467
Q ss_pred EEEEecCCccc----ccccc---cccccCccEEEEEEECCCc
Q psy15725 87 LQLWDTAGQER----FRSLI---PSYIRDSTVAVVVYDITNA 121 (355)
Q Consensus 87 ~~i~D~~g~~~----~~~~~---~~~~~~~d~ii~v~d~~~~ 121 (355)
+.++|++|.-. =..+- -..+|.+|+++-|+++...
T Consensus 86 l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~d 127 (391)
T KOG1491|consen 86 LTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFED 127 (391)
T ss_pred EEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecCc
Confidence 89999988521 12222 2346789999999988653
No 473
>PTZ00099 rab6; Provisional
Probab=97.71 E-value=8.7e-05 Score=61.61 Aligned_cols=121 Identities=69% Similarity=1.044 Sum_probs=109.1
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE 307 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~ 307 (355)
..+.+.|||++|++.+..++..++.+++++++|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+...
T Consensus 27 ~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~ 106 (176)
T PTZ00099 27 GPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYE 106 (176)
T ss_pred EEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCCHH
Confidence 56889999999999999999999999999999999999999999999999987655467999999999999766778888
Q ss_pred HHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCCCC
Q psy15725 308 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDST 348 (355)
Q Consensus 308 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~ 348 (355)
++..+++..++.+++|||++|.||+++|++|++.++...++
T Consensus 107 e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 107 EGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 88888888888999999999999999999999999876544
No 474
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.71 E-value=3.6e-05 Score=69.07 Aligned_cols=82 Identities=18% Similarity=0.218 Sum_probs=60.3
Q ss_pred ccccCccEEEEEEECCCcc-hhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccccccccCCCc
Q psy15725 104 SYIRDSTVAVVVYDITNAN-SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182 (355)
Q Consensus 104 ~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (355)
..+.++|.+++|+|+.++. ++..+..|+..+.. .+
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~--------------------------------------------~~ 109 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA--------------------------------------------AG 109 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH--------------------------------------------cC
Confidence 3478999999999999987 88888888877653 27
Q ss_pred cEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVR 231 (355)
Q Consensus 183 ~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~ 231 (355)
+|+++|+||+|+.++.. ...........+.+++.+|+.++.+++.+.
T Consensus 110 ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~ 156 (287)
T cd01854 110 IEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAKTGEGLDELR 156 (287)
T ss_pred CCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECCCCccHHHHH
Confidence 89999999999965421 111122233467788999999988876543
No 475
>PRK12289 GTPase RsgA; Reviewed
Probab=97.70 E-value=5.9e-05 Score=69.32 Aligned_cols=86 Identities=14% Similarity=0.217 Sum_probs=59.8
Q ss_pred ccccccccCccEEEEEEECCCcc-hhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccccccccc
Q psy15725 100 SLIPSYIRDSTVAVVVYDITNAN-SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTE 178 (355)
Q Consensus 100 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (355)
.+....+.++|.+++|+|+.++. .+..+..|+..+..
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~------------------------------------------ 118 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES------------------------------------------ 118 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH------------------------------------------
Confidence 34455688999999999999865 44456777765532
Q ss_pred CCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725 179 RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVR 231 (355)
Q Consensus 179 ~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~ 231 (355)
.++|+++|+||+|+.++... ..........+..++.+|+.++.+++.+.
T Consensus 119 --~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~iSA~tg~GI~eL~ 167 (352)
T PRK12289 119 --TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFISVETGIGLEALL 167 (352)
T ss_pred --CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEEEcCCCCCHHHHh
Confidence 37999999999999643221 11112223556788999999998887654
No 476
>KOG0073|consensus
Probab=97.69 E-value=8.7e-05 Score=58.82 Aligned_cols=119 Identities=21% Similarity=0.314 Sum_probs=97.2
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH-HhhcCCCceEEEEeeCCCCCC---cc
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIMLVGNKTDLSD---KR 302 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~piilv~nK~Dl~~---~~ 302 (355)
.+.+.+.+||.+|+..++..|+.||+.+|++|+|||++++..+++....+..+ .+....+.|+++++||.|+.. .+
T Consensus 57 ~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~ 136 (185)
T KOG0073|consen 57 YKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLE 136 (185)
T ss_pred ecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHH
Confidence 34567899999999999999999999999999999999999999987766554 444458999999999999862 22
Q ss_pred cCCHHHH-HHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 303 QVSTEEG-ERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 303 ~v~~~~~-~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
.+..... .++++...|+++-|||.+|+++.+.++||...+.++
T Consensus 137 ~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 137 EISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred HHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHHH
Confidence 3322222 234467789999999999999999999999988763
No 477
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=97.69 E-value=8.3e-05 Score=64.06 Aligned_cols=73 Identities=23% Similarity=0.555 Sum_probs=64.3
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSD 300 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~ 300 (355)
...+.+.+||++|++.|..+++.++.++|++++|||++++.+++.+ ..|...+.... .+.|++||+||+|+..
T Consensus 46 ~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~ 119 (222)
T cd04173 46 KRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRT 119 (222)
T ss_pred CEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECccccc
Confidence 3568899999999999999999999999999999999999999998 46877765544 6899999999999864
No 478
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.68 E-value=9.6e-05 Score=64.04 Aligned_cols=73 Identities=29% Similarity=0.577 Sum_probs=65.6
Q ss_pred ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCceEEEEeeCCCCC
Q psy15725 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLS 299 (355)
Q Consensus 226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~ 299 (355)
+...+.+.||||+|++.|..+++.++.+++++++|||+++..+++.+ ..|+..+.... .+.|+++|+||+|+.
T Consensus 57 ~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~ 130 (232)
T cd04174 57 EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLR 130 (232)
T ss_pred CCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccc
Confidence 34568899999999999999999999999999999999999999984 78999987755 578999999999985
No 479
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.67 E-value=0.00036 Score=61.78 Aligned_cols=93 Identities=17% Similarity=0.257 Sum_probs=66.6
Q ss_pred cccccCCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCC
Q psy15725 248 PSYIRDSTVAVVVYDITNAN-SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 326 (355)
Q Consensus 248 ~~~~~~~~~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~ 326 (355)
+.-..+.+-.++++.+.++. +...+++++-.... .++.-++++||.||.++...............+.+++.+||+
T Consensus 74 Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~ 150 (301)
T COG1162 74 RPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAK 150 (301)
T ss_pred CCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCc
Confidence 33344466667777766665 55556666655555 578888889999998665443333444556788999999999
Q ss_pred CCCCHHHHHHHHHHHcC
Q psy15725 327 AGYNVKQLFRRVAAALP 343 (355)
Q Consensus 327 ~~~gv~~l~~~l~~~i~ 343 (355)
++.|++++.+++...+-
T Consensus 151 ~~~~~~~l~~~l~~~~s 167 (301)
T COG1162 151 NGDGLEELAELLAGKIT 167 (301)
T ss_pred CcccHHHHHHHhcCCeE
Confidence 99999999999877654
No 480
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.67 E-value=4.8e-05 Score=67.75 Aligned_cols=112 Identities=14% Similarity=0.145 Sum_probs=75.0
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE 307 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~ 307 (355)
+...+.++||+|...+...+...+..+|++++|+|.++.........| ..+.. .++|.+++.||+|+..... ..
T Consensus 62 ~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~~~--~~ 135 (268)
T cd04170 62 KGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERADF--DK 135 (268)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCCCH--HH
Confidence 356788999999988877778888999999999999887665433333 23333 5799999999999864321 11
Q ss_pred HHHHHHhhcCcEE--EEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 308 EGERKAKELNVMF--IETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 308 ~~~~~~~~~~~~~--~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
....+....+.++ +.+...++.|+..+.+.+.......
T Consensus 136 ~~~~l~~~~~~~~~~~~ip~~~~~~~~~~vd~~~~~~~~~ 175 (268)
T cd04170 136 TLAALQEAFGRPVVPLQLPIGEGDDFKGVVDLLTEKAYIY 175 (268)
T ss_pred HHHHHHHHhCCCeEEEEecccCCCceeEEEEcccCEEEEc
Confidence 2223333344433 3455777778777777666555433
No 481
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.66 E-value=9.6e-05 Score=62.06 Aligned_cols=115 Identities=27% Similarity=0.367 Sum_probs=83.2
Q ss_pred ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcc--c
Q psy15725 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR--Q 303 (355)
Q Consensus 226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~--~ 303 (355)
......+.++|+||+..|.......+..+|++++|+|+.++...+. .+.+..+.. .++|++++.||+|+...+ .
T Consensus 66 ~~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~ 141 (188)
T PF00009_consen 66 NENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE---LGIPIIVVLNKMDLIEKELEE 141 (188)
T ss_dssp TESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH---TT-SEEEEEETCTSSHHHHHH
T ss_pred cccccceeecccccccceeecccceecccccceeeeeccccccccc-ccccccccc---cccceEEeeeeccchhhhHHH
Confidence 3457788999999999988877777889999999999998765433 334444444 589999999999987221 1
Q ss_pred CCHHHHHHHHhhc------CcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725 304 VSTEEGERKAKEL------NVMFIETSAKAGYNVKQLFRRVAAALPG 344 (355)
Q Consensus 304 v~~~~~~~~~~~~------~~~~~~~SA~~~~gv~~l~~~l~~~i~~ 344 (355)
+..+....+.+.. .+|++++||++|.|+++|+++|.+.+|.
T Consensus 142 ~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P~ 188 (188)
T PF00009_consen 142 IIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLPS 188 (188)
T ss_dssp HHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS--
T ss_pred HHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCcC
Confidence 1111121232222 3689999999999999999999999984
No 482
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.66 E-value=6e-05 Score=69.90 Aligned_cols=24 Identities=29% Similarity=0.528 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDS 37 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~ 37 (355)
.+++++|.+|||||||+|+++...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~ 178 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQN 178 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 489999999999999999999853
No 483
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=97.66 E-value=0.0001 Score=61.54 Aligned_cols=112 Identities=23% Similarity=0.262 Sum_probs=83.9
Q ss_pred eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCC--H
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVS--T 306 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~--~ 306 (355)
...+.++|++|...+...+..++..+|++++|+|++++..... ..++..+.. .++|+++++||+|+..+.... .
T Consensus 61 ~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~ 136 (189)
T cd00881 61 DRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVL 136 (189)
T ss_pred CEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHH
Confidence 5678899999998888888888999999999999987765432 234444433 589999999999987532211 1
Q ss_pred HHHHHHHhh--------------cCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725 307 EEGERKAKE--------------LNVMFIETSAKAGYNVKQLFRRVAAALPG 344 (355)
Q Consensus 307 ~~~~~~~~~--------------~~~~~~~~SA~~~~gv~~l~~~l~~~i~~ 344 (355)
....+..+. ...+++++||++|.|+++++++|.+.++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~ 188 (189)
T cd00881 137 REIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred HHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCCC
Confidence 122222222 34689999999999999999999999874
No 484
>PRK10867 signal recognition particle protein; Provisional
Probab=97.62 E-value=0.0008 Score=63.49 Aligned_cols=86 Identities=10% Similarity=0.041 Sum_probs=45.2
Q ss_pred EEEEEEeCCCcccccc-ccc---c--cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCccc
Q psy15725 230 VRLQLWDTAGQERFRS-LIP---S--YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ 303 (355)
Q Consensus 230 i~~~i~D~~g~~~~~~-~~~---~--~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 303 (355)
+-+.|+||+|...... +.. . ..-..+.+++|+|.... ++..+....+.+. .+ ..-+|+||.|-...
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~--~~-i~giIlTKlD~~~r-- 255 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEA--LG-LTGVILTKLDGDAR-- 255 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhh--CC-CCEEEEeCccCccc--
Confidence 4466889998432211 000 0 01134567899987543 3333333444331 11 24577799995211
Q ss_pred CCHHHHHHHHhhcCcEEEEecC
Q psy15725 304 VSTEEGERKAKELNVMFIETSA 325 (355)
Q Consensus 304 v~~~~~~~~~~~~~~~~~~~SA 325 (355)
...+.......++|+.+++.
T Consensus 256 --gG~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 256 --GGAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred --ccHHHHHHHHHCcCEEEEeC
Confidence 22355566667788777665
No 485
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.61 E-value=0.00028 Score=57.44 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.7
Q ss_pred EEEEcCCCCChhHHHHHhhhcC
Q psy15725 16 LVFLGEQSVGKTSLITRFMYDS 37 (355)
Q Consensus 16 I~vvG~~~vGKStLl~~l~~~~ 37 (355)
++++|..|+|||||+++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~~ 24 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTEQ 24 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhcc
Confidence 6799999999999999998753
No 486
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.60 E-value=0.00027 Score=59.85 Aligned_cols=110 Identities=15% Similarity=0.182 Sum_probs=68.2
Q ss_pred EEEEEeCCCcccccc-----cccccccCCcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCceEEEEeeCCCCCCcccC
Q psy15725 231 RLQLWDTAGQERFRS-----LIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV 304 (355)
Q Consensus 231 ~~~i~D~~g~~~~~~-----~~~~~~~~~~~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v 304 (355)
.+.+||++|...... +....+..+|.++++.+ ++ +... ..+++.+.. .+.|+++|+||+|+..+...
T Consensus 53 ~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~--~~--~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~ 125 (197)
T cd04104 53 NVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISS--TR--FSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQ 125 (197)
T ss_pred CceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeC--CC--CCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhh
Confidence 467899998543211 12223567888888743 22 2233 345666655 37899999999998432110
Q ss_pred -------CHHHHH----H-H---HhhcC---cEEEEecCC--CCCCHHHHHHHHHHHcCCCCC
Q psy15725 305 -------STEEGE----R-K---AKELN---VMFIETSAK--AGYNVKQLFRRVAAALPGMDS 347 (355)
Q Consensus 305 -------~~~~~~----~-~---~~~~~---~~~~~~SA~--~~~gv~~l~~~l~~~i~~~~~ 347 (355)
..++.. + . ....+ -++|.+|+. .+.|+..+.+.+...+++.+.
T Consensus 126 ~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~ 188 (197)
T cd04104 126 RSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence 011111 1 1 11212 379999998 689999999999999987653
No 487
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.59 E-value=0.00015 Score=60.12 Aligned_cols=73 Identities=30% Similarity=0.572 Sum_probs=64.6
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCceEEEEeeCCCCCCc
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDK 301 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~ 301 (355)
..+.+.+||++|++.+..++..++.+++++++|||++++.+++.+. .|+..+.... .++|+++|+||+|+...
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~ 120 (175)
T cd01874 47 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 120 (175)
T ss_pred EEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhC
Confidence 4578899999999999999999999999999999999999999986 5988887654 57999999999998543
No 488
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=97.58 E-value=8.3e-05 Score=68.59 Aligned_cols=146 Identities=23% Similarity=0.257 Sum_probs=96.4
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~ 92 (355)
.++|+++|.+|||||||+|+|++...... +...+|. ++....+.+++. ..+.+|||
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~---------------------~~~~tT~--d~~~~~i~~~~~-~~i~l~DT 244 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAA---------------------DQLFATL--DPTTRRLDLPDG-GEVLLTDT 244 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeec---------------------cCCcccc--CCEEEEEEeCCC-ceEEEEec
Confidence 47999999999999999999998542111 0111222 223344444332 47899999
Q ss_pred CCc-c--------cccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccC
Q psy15725 93 AGQ-E--------RFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHAN 163 (355)
Q Consensus 93 ~g~-~--------~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (355)
+|. . .|...+ ..+..+|++++|+|++++.+++++..|.+.+....
T Consensus 245 ~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~------------------------- 298 (351)
T TIGR03156 245 VGFIRDLPHELVAAFRATL-EEVREADLLLHVVDASDPDREEQIEAVEKVLEELG------------------------- 298 (351)
T ss_pred CcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhc-------------------------
Confidence 997 2 222222 24778999999999999988887776666554321
Q ss_pred ccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceE
Q psy15725 164 SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230 (355)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i 230 (355)
..+.|+++|+||+|+.+...+. ... ....+++.+|+.++.+++.+
T Consensus 299 ----------------~~~~piIlV~NK~Dl~~~~~v~-----~~~-~~~~~~i~iSAktg~GI~eL 343 (351)
T TIGR03156 299 ----------------AEDIPQLLVYNKIDLLDEPRIE-----RLE-EGYPEAVFVSAKTGEGLDLL 343 (351)
T ss_pred ----------------cCCCCEEEEEEeecCCChHhHH-----HHH-hCCCCEEEEEccCCCCHHHH
Confidence 1368999999999986532221 111 11235788999998887654
No 489
>PRK00098 GTPase RsgA; Reviewed
Probab=97.58 E-value=8.1e-05 Score=67.21 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=57.6
Q ss_pred ccCccEEEEEEECCCcchhhh-HHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccccccccCCCccE
Q psy15725 106 IRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVI 184 (355)
Q Consensus 106 ~~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 184 (355)
..++|.+++|+|+.++..+.. +..|+..+.. .++|
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~--------------------------------------------~~ip 113 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--------------------------------------------NGIK 113 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--------------------------------------------CCCC
Confidence 589999999999998876654 5677766543 2789
Q ss_pred EEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725 185 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVR 231 (355)
Q Consensus 185 iilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~ 231 (355)
+++|+||+|+.+.... .....+.....+.+++.+|+.++.+++.++
T Consensus 114 ~iIVlNK~DL~~~~~~-~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~ 159 (298)
T PRK00098 114 PIIVLNKIDLLDDLEE-ARELLALYRAIGYDVLELSAKEGEGLDELK 159 (298)
T ss_pred EEEEEEhHHcCCCHHH-HHHHHHHHHHCCCeEEEEeCCCCccHHHHH
Confidence 9999999999532211 112223334557789999999988877643
No 490
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.57 E-value=0.00012 Score=59.69 Aligned_cols=115 Identities=37% Similarity=0.568 Sum_probs=101.0
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC-CCceEEEEeeCCCCCCcccCCH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDKRQVST 306 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~v~~ 306 (355)
..+.+.+||++|++.+..++..++.+++++++|||+++..+++++..|...+..... .++|+++|+||+|+.....+..
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~ 126 (163)
T cd04176 47 SPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSS 126 (163)
T ss_pred EEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCH
Confidence 356788999999999999999999999999999999999999999999888876532 6899999999999976666666
Q ss_pred HHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725 307 EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342 (355)
Q Consensus 307 ~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i 342 (355)
.+...+++..+++++++||++|.|++++|++|++.+
T Consensus 127 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 127 AEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred HHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 667777777788999999999999999999999865
No 491
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.57 E-value=0.00011 Score=62.33 Aligned_cols=55 Identities=42% Similarity=0.797 Sum_probs=50.8
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhh
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE 282 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~ 282 (355)
..+.+.+||++|++.+..+++.++.+++++++|||++++.+++.+..|+..+...
T Consensus 48 ~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~ 102 (201)
T cd04107 48 TVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSK 102 (201)
T ss_pred CEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999999999999999999888764
No 492
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.54 E-value=0.00025 Score=61.14 Aligned_cols=116 Identities=31% Similarity=0.552 Sum_probs=101.0
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE 307 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~ 307 (355)
..+.+.+||++|++.+..++..++..++++++|||+++..+++.+..|+..+.... .++|+++|+||+|+.+ +.+...
T Consensus 60 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~ 137 (219)
T PLN03071 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK 137 (219)
T ss_pred eEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHH
Confidence 46789999999999999999999999999999999999999999999999987654 6899999999999853 334444
Q ss_pred HHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725 308 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346 (355)
Q Consensus 308 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~ 346 (355)
.. .+.+..++++++|||++|.||+++|++|++.+....
T Consensus 138 ~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~~~ 175 (219)
T PLN03071 138 QV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 175 (219)
T ss_pred HH-HHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHHHcCc
Confidence 33 666677889999999999999999999999997654
No 493
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.53 E-value=0.00015 Score=59.85 Aligned_cols=52 Identities=27% Similarity=0.511 Sum_probs=46.9
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 279 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i 279 (355)
..+.+.+||++|++.+..++..++..++++++|||+++..+++.+..|...+
T Consensus 48 ~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i 99 (172)
T cd04141 48 EPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLI 99 (172)
T ss_pred EEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999988776554
No 494
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.00043 Score=63.77 Aligned_cols=108 Identities=17% Similarity=0.167 Sum_probs=77.3
Q ss_pred EEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCce-EEEEeeCCCCCCcccCCHHHH
Q psy15725 231 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKRQVSTEEG 309 (355)
Q Consensus 231 ~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~ 309 (355)
...++|.+|++.+-.-.-..+...|..++|++.++....+..+ .+..+ +. -+++ .++|+||+|..++..+. +..
T Consensus 51 ~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgE-hL~iL-dl--lgi~~giivltk~D~~d~~r~e-~~i 125 (447)
T COG3276 51 VMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGE-HLLIL-DL--LGIKNGIIVLTKADRVDEARIE-QKI 125 (447)
T ss_pred ceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHH-HHHHH-Hh--cCCCceEEEEeccccccHHHHH-HHH
Confidence 7789999999998776666677899999999998776655432 22222 22 3555 69999999997654321 122
Q ss_pred HHHHhh---cCcEEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725 310 ERKAKE---LNVMFIETSAKAGYNVKQLFRRVAAALP 343 (355)
Q Consensus 310 ~~~~~~---~~~~~~~~SA~~~~gv~~l~~~l~~~i~ 343 (355)
...... ...++|.+||++|.||++|-++|.+...
T Consensus 126 ~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 126 KQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred HHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence 222222 2258999999999999999999999884
No 495
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.53 E-value=0.00019 Score=72.41 Aligned_cols=96 Identities=19% Similarity=0.183 Sum_probs=65.6
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE 307 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~ 307 (355)
++..+.++||+|...+...+...+..+|++++|+|.++....+... +...+.. .++|+++++||+|+...+. ..
T Consensus 73 ~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~---~~~p~ivviNK~D~~~~~~--~~ 146 (689)
T TIGR00484 73 KGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANR---YEVPRIAFVNKMDKTGANF--LR 146 (689)
T ss_pred CCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHH---cCCCEEEEEECCCCCCCCH--HH
Confidence 3578899999999888777888899999999999998876655432 2233333 5799999999999864331 11
Q ss_pred HHHHHHhhcC---c-EEEEecCCCCC
Q psy15725 308 EGERKAKELN---V-MFIETSAKAGY 329 (355)
Q Consensus 308 ~~~~~~~~~~---~-~~~~~SA~~~~ 329 (355)
....+....+ + ..+++||..+.
T Consensus 147 ~~~~i~~~l~~~~~~~~ipis~~~~~ 172 (689)
T TIGR00484 147 VVNQIKQRLGANAVPIQLPIGAEDNF 172 (689)
T ss_pred HHHHHHHHhCCCceeEEeccccCCCc
Confidence 1122222222 1 36788887764
No 496
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.52 E-value=0.0014 Score=61.77 Aligned_cols=92 Identities=13% Similarity=0.086 Sum_probs=49.9
Q ss_pred EEEEEEeCCCcccccc-ccc-----ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCccc
Q psy15725 230 VRLQLWDTAGQERFRS-LIP-----SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ 303 (355)
Q Consensus 230 i~~~i~D~~g~~~~~~-~~~-----~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 303 (355)
+-+.|+||+|...... +.. ...-..+.+++|+|.... ++...+...+.+.. + ..-+|.||.|-..
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v--~-i~giIlTKlD~~~--- 253 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL--G-LTGVVLTKLDGDA--- 253 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC--C-CCEEEEeCccCcc---
Confidence 3456889998432211 110 012245678999997643 34334444443321 2 3467799999521
Q ss_pred CCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725 304 VSTEEGERKAKELNVMFIETSAKAGYNVKQ 333 (355)
Q Consensus 304 v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~ 333 (355)
....+.......++|+.+++. |+++++
T Consensus 254 -~~G~~lsi~~~~~~PI~fi~~--Ge~i~d 280 (428)
T TIGR00959 254 -RGGAALSVRSVTGKPIKFIGV--GEKIDD 280 (428)
T ss_pred -cccHHHHHHHHHCcCEEEEeC--CCChhh
Confidence 122355666667788877665 444444
No 497
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=97.50 E-value=0.00018 Score=58.62 Aligned_cols=116 Identities=31% Similarity=0.530 Sum_probs=98.9
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCH
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST 306 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~ 306 (355)
...+.+.+||++|++.+..++..++..++++++|||++++.+++++..|+..+.... .++|+++|+||+|+... . .
T Consensus 46 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~--~-~ 121 (161)
T cd04124 46 GKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS--V-T 121 (161)
T ss_pred CEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh--H-H
Confidence 346788999999999999999999999999999999999999999999999987644 57999999999998422 1 2
Q ss_pred HHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725 307 EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346 (355)
Q Consensus 307 ~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~ 346 (355)
.+...+++..+++++++||++|.|++++|+.+++.+.+.|
T Consensus 122 ~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 161 (161)
T cd04124 122 QKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVSYK 161 (161)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhcC
Confidence 3344566667789999999999999999999999887654
No 498
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=97.50 E-value=0.00017 Score=58.66 Aligned_cols=115 Identities=37% Similarity=0.566 Sum_probs=101.7
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC-CCceEEEEeeCCCCCCcccCCH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDKRQVST 306 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~v~~ 306 (355)
..+.+.+||++|++.+..++..++.+++++++|||+++..+++.+..|...+..... .++|+++|+||+|+...+.+..
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~ 126 (163)
T cd04136 47 QQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSR 126 (163)
T ss_pred EEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecH
Confidence 456788999999999999999999999999999999999999999999988876543 5899999999999976666767
Q ss_pred HHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725 307 EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342 (355)
Q Consensus 307 ~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i 342 (355)
.+...+++.++++++++||++|.||+++|++|.+.+
T Consensus 127 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 127 EEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 777777777789999999999999999999999875
No 499
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.49 E-value=0.00012 Score=55.33 Aligned_cols=99 Identities=20% Similarity=0.146 Sum_probs=67.0
Q ss_pred EEeCCCcccccccc----cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHH
Q psy15725 234 LWDTAGQERFRSLI----PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEG 309 (355)
Q Consensus 234 i~D~~g~~~~~~~~----~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~ 309 (355)
.+||+|...-...| .....+++.++++-...++.+.-. ..+... -.+|+|-+.+|.|+.++..+ +..
T Consensus 41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~-----p~f~~~--~~k~vIgvVTK~DLaed~dI--~~~ 111 (148)
T COG4917 41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFP-----PGFLDI--GVKKVIGVVTKADLAEDADI--SLV 111 (148)
T ss_pred ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCC-----cccccc--cccceEEEEecccccchHhH--HHH
Confidence 57888854433333 334568889999888887754211 112221 24669999999999764444 234
Q ss_pred HHHHhhcCc-EEEEecCCCCCCHHHHHHHHHHH
Q psy15725 310 ERKAKELNV-MFIETSAKAGYNVKQLFRRVAAA 341 (355)
Q Consensus 310 ~~~~~~~~~-~~~~~SA~~~~gv~~l~~~l~~~ 341 (355)
+.+...-|. ++|.+||.++.||++++++|...
T Consensus 112 ~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 112 KRWLREAGAEPIFETSAVDNQGVEELVDYLASL 144 (148)
T ss_pred HHHHHHcCCcceEEEeccCcccHHHHHHHHHhh
Confidence 445555565 89999999999999999998754
No 500
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.49 E-value=0.00015 Score=60.57 Aligned_cols=117 Identities=23% Similarity=0.462 Sum_probs=98.9
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCC-----cc
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD-----KR 302 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-----~~ 302 (355)
..+.+.+||++|++.|..+++.++.+++++++|||++++.+++++..|+..+........| ++|+||+|+.. ..
T Consensus 47 ~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~ 125 (182)
T cd04128 47 TEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQ 125 (182)
T ss_pred EEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhh
Confidence 4688999999999999999999999999999999999999999999999998775545677 67899999852 11
Q ss_pred cCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 303 QVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 303 ~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
.....+...+++..++++++|||++|.||+++|+++++.+...
T Consensus 126 ~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~~ 168 (182)
T cd04128 126 EEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFDL 168 (182)
T ss_pred hhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 1223456667778889999999999999999999999988653
Done!