Query psy15725
Match_columns 355
No_of_seqs 194 out of 2227
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 19:49:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15725.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15725hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 7.2E-36 2.5E-40 255.6 18.4 179 1-347 1-179 (216)
2 2hjg_A GTP-binding protein ENG 100.0 4.4E-31 1.5E-35 249.7 9.6 255 14-346 4-351 (436)
3 4dcu_A GTP-binding protein ENG 100.0 1.5E-30 5E-35 247.5 10.7 261 11-348 21-373 (456)
4 3t5g_A GTP-binding protein RHE 100.0 6.6E-28 2.3E-32 200.8 19.4 175 11-353 4-178 (181)
5 3cpj_B GTP-binding protein YPT 100.0 6.1E-28 2.1E-32 208.2 19.4 182 1-350 1-182 (223)
6 2y8e_A RAB-protein 6, GH09086P 100.0 6.9E-28 2.4E-32 199.9 18.7 176 1-345 3-178 (179)
7 3kkq_A RAS-related protein M-R 100.0 7.8E-28 2.7E-32 200.7 18.5 171 6-344 11-182 (183)
8 2efe_B Small GTP-binding prote 100.0 2.3E-27 7.9E-32 197.3 21.2 173 8-348 7-179 (181)
9 1z0f_A RAB14, member RAS oncog 100.0 1.9E-27 6.5E-32 197.3 20.1 170 7-344 9-178 (179)
10 1r2q_A RAS-related protein RAB 100.0 2E-27 6.9E-32 195.3 19.9 104 9-135 2-105 (170)
11 2fu5_C RAS-related protein RAB 100.0 3.3E-28 1.1E-32 202.9 14.6 169 12-348 7-175 (183)
12 2hxs_A RAB-26, RAS-related pro 100.0 2.1E-27 7.2E-32 197.0 18.9 173 10-347 3-176 (178)
13 2a5j_A RAS-related protein RAB 100.0 2.4E-27 8.3E-32 199.3 19.1 171 8-346 16-186 (191)
14 2ew1_A RAS-related protein RAB 100.0 1.2E-27 4.2E-32 202.8 17.4 103 10-135 23-125 (201)
15 1z0j_A RAB-22, RAS-related pro 100.0 6.9E-27 2.4E-31 192.2 21.3 167 10-344 3-169 (170)
16 1ek0_A Protein (GTP-binding pr 100.0 3.8E-27 1.3E-31 193.7 19.2 102 12-136 2-103 (170)
17 1z08_A RAS-related protein RAB 100.0 2.6E-27 8.7E-32 194.9 18.2 167 10-344 3-169 (170)
18 2hup_A RAS-related protein RAB 100.0 2E-27 6.7E-32 201.6 17.5 168 11-346 27-195 (201)
19 3tkl_A RAS-related protein RAB 100.0 5.1E-27 1.7E-31 197.8 19.8 170 11-348 14-183 (196)
20 3oes_A GTPase rhebl1; small GT 100.0 1.3E-27 4.4E-32 202.7 16.0 176 10-353 21-196 (201)
21 3cbq_A GTP-binding protein REM 100.0 2.4E-27 8.1E-32 200.1 17.4 172 9-347 19-191 (195)
22 2fg5_A RAB-22B, RAS-related pr 100.0 5.8E-27 2E-31 197.2 19.5 168 11-346 21-188 (192)
23 2gf9_A RAS-related protein RAB 100.0 7.7E-27 2.6E-31 195.9 20.2 166 11-344 20-185 (189)
24 3q3j_B RHO-related GTP-binding 100.0 2.5E-27 8.6E-32 203.0 17.6 184 9-350 23-209 (214)
25 1mky_A Probable GTP-binding pr 100.0 6.1E-28 2.1E-32 228.4 14.7 252 15-345 3-356 (439)
26 2g6b_A RAS-related protein RAB 100.0 1.2E-26 4E-31 192.8 20.6 171 10-347 7-177 (180)
27 2fn4_A P23, RAS-related protei 100.0 4E-27 1.4E-31 195.6 17.7 172 9-348 5-176 (181)
28 3tw8_B RAS-related protein RAB 100.0 2.9E-27 1E-31 196.5 16.8 169 10-347 6-174 (181)
29 2bme_A RAB4A, RAS-related prot 99.9 4.5E-27 1.5E-31 196.5 17.3 102 11-135 8-109 (186)
30 3reg_A RHO-like small GTPase; 99.9 9.2E-27 3.1E-31 196.2 19.2 103 9-135 19-122 (194)
31 2g3y_A GTP-binding protein GEM 99.9 3.4E-27 1.2E-31 201.2 16.6 171 10-346 34-205 (211)
32 3ihw_A Centg3; RAS, centaurin, 99.9 5.2E-27 1.8E-31 196.2 17.3 98 8-135 15-112 (184)
33 1x3s_A RAS-related protein RAB 99.9 1.7E-26 5.9E-31 194.4 20.5 170 9-346 11-180 (195)
34 1c1y_A RAS-related protein RAP 99.9 1.1E-26 3.9E-31 190.3 18.5 164 12-343 2-166 (167)
35 3bc1_A RAS-related protein RAB 99.9 4.8E-27 1.6E-31 197.4 16.6 175 5-346 3-187 (195)
36 2oil_A CATX-8, RAS-related pro 99.9 7.5E-27 2.6E-31 196.5 17.7 103 10-135 22-124 (193)
37 3dz8_A RAS-related protein RAB 99.9 1.7E-27 5.7E-32 200.3 13.5 169 10-346 20-188 (191)
38 3q85_A GTP-binding protein REM 99.9 7.8E-27 2.7E-31 191.9 17.1 167 13-346 2-169 (169)
39 2nzj_A GTP-binding protein REM 99.9 5.6E-27 1.9E-31 193.8 16.2 168 12-347 3-172 (175)
40 1z2a_A RAS-related protein RAB 99.9 8.9E-27 3E-31 191.2 17.2 101 12-135 4-104 (168)
41 2bcg_Y Protein YP2, GTP-bindin 99.9 3.3E-26 1.1E-30 194.6 21.4 167 11-345 6-172 (206)
42 1g16_A RAS-related protein SEC 99.9 1.4E-26 4.7E-31 190.4 18.1 101 12-135 2-102 (170)
43 3q72_A GTP-binding protein RAD 99.9 8.4E-27 2.9E-31 191.1 16.7 165 12-345 1-165 (166)
44 2o52_A RAS-related protein RAB 99.9 4.7E-27 1.6E-31 199.1 15.5 169 11-347 23-191 (200)
45 2atx_A Small GTP binding prote 99.9 2.6E-26 8.9E-31 193.4 19.8 181 6-344 11-193 (194)
46 1z06_A RAS-related protein RAB 99.9 1.2E-26 4.1E-31 194.7 17.6 168 10-344 17-188 (189)
47 3c5c_A RAS-like protein 12; GD 99.9 1.3E-26 4.6E-31 194.2 17.6 169 9-344 17-186 (187)
48 1zbd_A Rabphilin-3A; G protein 99.9 2.9E-26 1E-30 194.5 19.5 165 12-344 7-171 (203)
49 2il1_A RAB12; G-protein, GDP, 99.9 9.8E-27 3.3E-31 195.8 16.2 103 10-135 23-125 (192)
50 3t1o_A Gliding protein MGLA; G 99.9 3.2E-27 1.1E-31 199.1 13.2 187 6-347 7-195 (198)
51 1wms_A RAB-9, RAB9, RAS-relate 99.9 5.4E-26 1.8E-30 188.3 20.0 171 10-345 4-175 (177)
52 2p5s_A RAS and EF-hand domain 99.9 1.2E-26 4.1E-31 196.4 15.9 104 10-136 25-128 (199)
53 1u8z_A RAS-related protein RAL 99.9 2.5E-26 8.7E-31 188.2 17.2 165 12-344 3-167 (168)
54 2bov_A RAla, RAS-related prote 99.9 1.2E-26 3.9E-31 197.2 15.7 169 9-345 10-178 (206)
55 2a9k_A RAS-related protein RAL 99.9 1.5E-26 5E-31 193.2 15.7 171 8-346 13-183 (187)
56 1mh1_A RAC1; GTP-binding, GTPa 99.9 5.2E-26 1.8E-30 189.8 19.0 179 11-347 3-183 (186)
57 2q3h_A RAS homolog gene family 99.9 2.8E-26 9.6E-31 194.3 16.7 181 9-347 16-198 (201)
58 1m7b_A RND3/RHOE small GTP-bin 99.9 3.8E-26 1.3E-30 190.8 16.9 177 10-344 4-183 (184)
59 1kao_A RAP2A; GTP-binding prot 99.9 1.9E-26 6.6E-31 188.7 14.4 164 12-343 2-165 (167)
60 2j1l_A RHO-related GTP-binding 99.9 3.2E-26 1.1E-30 196.1 16.4 181 9-347 30-212 (214)
61 2iwr_A Centaurin gamma 1; ANK 99.9 9E-26 3.1E-30 187.3 18.6 95 11-135 5-99 (178)
62 2j0v_A RAC-like GTP-binding pr 99.9 3.4E-26 1.1E-30 195.5 16.4 177 11-349 7-185 (212)
63 2erx_A GTP-binding protein DI- 99.9 5.9E-26 2E-30 186.8 17.0 168 12-346 2-169 (172)
64 4djt_A GTP-binding nuclear pro 99.9 5.5E-26 1.9E-30 195.0 17.2 175 7-349 5-180 (218)
65 3clv_A RAB5 protein, putative; 99.9 1.8E-25 6.3E-30 189.3 20.2 100 12-134 6-142 (208)
66 1ky3_A GTP-binding protein YPT 99.9 4.7E-26 1.6E-30 189.3 16.1 103 10-135 5-108 (182)
67 2f7s_A C25KG, RAS-related prot 99.9 1.3E-26 4.6E-31 198.7 13.1 168 11-345 23-200 (217)
68 2atv_A RERG, RAS-like estrogen 99.9 3.8E-26 1.3E-30 192.8 15.6 167 10-345 25-192 (196)
69 3gj0_A GTP-binding nuclear pro 99.9 3.2E-26 1.1E-30 197.0 14.2 109 5-136 7-115 (221)
70 1gwn_A RHO-related GTP-binding 99.9 8.1E-26 2.8E-30 192.2 16.3 177 10-344 25-204 (205)
71 3cph_A RAS-related protein SEC 99.9 2.1E-25 7E-30 190.6 18.9 102 11-135 18-119 (213)
72 4dsu_A GTPase KRAS, isoform 2B 99.9 5.3E-26 1.8E-30 190.3 15.0 101 11-135 2-102 (189)
73 2fv8_A H6, RHO-related GTP-bin 99.9 3.1E-25 1.1E-29 188.9 19.6 179 11-347 23-203 (207)
74 4bas_A ADP-ribosylation factor 99.9 5.8E-26 2E-30 191.8 14.6 102 8-135 12-113 (199)
75 1vg8_A RAS-related protein RAB 99.9 3.5E-25 1.2E-29 188.3 19.5 103 10-135 5-107 (207)
76 2gco_A H9, RHO-related GTP-bin 99.9 3.5E-25 1.2E-29 187.7 19.4 175 11-343 23-199 (201)
77 2cjw_A GTP-binding protein GEM 99.9 3E-25 1E-29 186.8 18.7 168 12-345 5-173 (192)
78 2yc2_C IFT27, small RAB-relate 99.9 4E-26 1.4E-30 194.1 13.3 171 11-344 18-192 (208)
79 3con_A GTPase NRAS; structural 99.9 3.4E-25 1.2E-29 185.8 18.8 171 9-348 17-187 (190)
80 2gf0_A GTP-binding protein DI- 99.9 2.5E-25 8.5E-30 187.9 17.9 170 9-346 4-173 (199)
81 3bwd_D RAC-like GTP-binding pr 99.9 4.6E-26 1.6E-30 189.6 12.6 174 11-344 6-181 (182)
82 4gzl_A RAS-related C3 botulinu 99.9 3.2E-25 1.1E-29 188.4 16.9 176 9-342 26-203 (204)
83 2ce2_X GTPase HRAS; signaling 99.9 8.9E-25 3E-29 178.5 18.4 164 12-344 2-165 (166)
84 1r8s_A ADP-ribosylation factor 99.9 2.1E-25 7E-30 182.4 12.0 94 14-135 1-94 (164)
85 1zd9_A ADP-ribosylation factor 99.9 3.8E-25 1.3E-29 185.4 12.3 98 11-135 20-117 (188)
86 1f6b_A SAR1; gtpases, N-termin 99.9 2.6E-24 8.8E-29 181.9 17.4 98 11-136 23-120 (198)
87 1upt_A ARL1, ADP-ribosylation 99.9 1.6E-24 5.3E-29 178.3 15.5 96 12-135 6-101 (171)
88 1m2o_B GTP-binding protein SAR 99.9 7.9E-24 2.7E-28 177.7 19.0 98 11-136 21-118 (190)
89 2b6h_A ADP-ribosylation factor 99.9 9.3E-25 3.2E-29 183.7 13.1 97 11-135 27-123 (192)
90 3l0i_B RAS-related protein RAB 99.9 1.2E-25 4E-30 190.3 7.0 157 11-231 31-187 (199)
91 1zj6_A ADP-ribosylation factor 99.9 1.4E-24 4.8E-29 181.7 13.4 97 11-135 14-110 (187)
92 1fzq_A ADP-ribosylation factor 99.9 9.8E-25 3.4E-29 181.8 12.2 98 10-135 13-110 (181)
93 1ksh_A ARF-like protein 2; sma 99.9 1.7E-23 5.7E-28 174.8 18.3 97 11-135 16-112 (186)
94 2zej_A Dardarin, leucine-rich 99.9 7.1E-25 2.4E-29 183.1 9.9 103 13-136 2-108 (184)
95 2h57_A ADP-ribosylation factor 99.9 1.9E-23 6.6E-28 175.2 18.5 100 10-135 18-117 (190)
96 2x77_A ADP-ribosylation factor 99.9 2.3E-24 7.7E-29 180.7 12.2 97 11-135 20-116 (189)
97 3llu_A RAS-related GTP-binding 99.9 5.4E-24 1.9E-28 179.6 13.2 102 7-134 14-123 (196)
98 2f9l_A RAB11B, member RAS onco 99.9 8.6E-23 2.9E-27 172.6 20.5 100 12-134 4-103 (199)
99 1oix_A RAS-related protein RAB 99.9 2.2E-22 7.5E-27 169.0 20.0 102 11-135 27-128 (191)
100 2wkq_A NPH1-1, RAS-related C3 99.9 8.4E-23 2.9E-27 186.3 17.7 176 12-345 154-331 (332)
101 3c5h_A Glucocorticoid receptor 99.9 3.1E-23 1.1E-27 182.2 11.9 89 253-343 162-254 (255)
102 2fh5_B SR-beta, signal recogni 99.9 5.5E-23 1.9E-27 175.7 11.5 123 10-197 4-130 (214)
103 3o47_A ADP-ribosylation factor 99.9 6.1E-23 2.1E-27 186.7 12.2 96 12-135 164-259 (329)
104 2h17_A ADP-ribosylation factor 99.9 1.5E-22 5.1E-27 168.4 13.1 154 9-230 17-173 (181)
105 2wji_A Ferrous iron transport 99.9 2.1E-22 7E-27 165.1 13.4 83 254-343 82-164 (165)
106 3lvq_E ARF-GAP with SH3 domain 99.9 1.5E-22 5.2E-27 194.7 14.5 97 11-135 320-416 (497)
107 2lkc_A Translation initiation 99.9 2.1E-21 7.2E-26 160.6 16.7 86 11-121 6-91 (178)
108 3th5_A RAS-related C3 botulinu 99.8 3.7E-24 1.3E-28 181.7 0.0 159 11-235 28-200 (204)
109 1moz_A ARL1, ADP-ribosylation 99.9 7.8E-22 2.7E-26 164.1 12.7 150 11-230 16-170 (183)
110 3r7w_B Gtpase2, GTP-binding pr 99.9 3E-22 1E-26 179.0 10.0 90 15-130 1-93 (331)
111 2qu8_A Putative nucleolar GTP- 99.9 1.3E-20 4.3E-25 162.8 16.6 91 254-345 109-206 (228)
112 2wjg_A FEOB, ferrous iron tran 99.9 2.3E-21 7.9E-26 162.0 11.3 86 254-346 86-171 (188)
113 1svi_A GTP-binding protein YSX 99.9 2.8E-21 9.5E-26 162.5 11.8 85 255-343 107-194 (195)
114 3iev_A GTP-binding protein ERA 99.9 1.3E-20 4.3E-25 169.9 16.2 90 254-346 93-184 (308)
115 3dpu_A RAB family protein; roc 99.9 2.7E-21 9.1E-26 187.4 12.4 167 9-347 37-211 (535)
116 3r7w_A Gtpase1, GTP-binding pr 99.8 4.5E-21 1.5E-25 172.9 12.0 154 12-228 2-169 (307)
117 2cxx_A Probable GTP-binding pr 99.8 2.1E-21 7.2E-26 162.4 9.0 61 285-348 121-188 (190)
118 2gj8_A MNME, tRNA modification 99.8 6.5E-21 2.2E-25 157.3 11.3 90 12-125 3-100 (172)
119 2dyk_A GTP-binding protein; GT 99.8 1.5E-20 5E-25 152.8 11.4 53 286-343 108-161 (161)
120 3a1s_A Iron(II) transport prot 99.8 3.5E-20 1.2E-24 162.7 13.6 84 254-344 84-167 (258)
121 3pqc_A Probable GTP-binding pr 99.8 7.1E-20 2.4E-24 153.6 12.5 87 254-344 105-194 (195)
122 3b1v_A Ferrous iron uptake tra 99.8 2E-20 6.8E-25 165.2 9.3 84 254-344 81-164 (272)
123 4dhe_A Probable GTP-binding pr 99.8 3.9E-20 1.3E-24 158.9 9.4 91 254-348 116-215 (223)
124 1nrj_B SR-beta, signal recogni 99.8 1.2E-20 3.9E-25 161.7 3.7 155 6-226 5-170 (218)
125 3tr5_A RF-3, peptide chain rel 99.8 5.9E-19 2E-23 169.3 15.8 268 11-348 11-281 (528)
126 1wf3_A GTP-binding protein; GT 99.8 3.2E-19 1.1E-23 159.9 12.5 88 252-345 85-174 (301)
127 3k53_A Ferrous iron transport 99.8 3.3E-19 1.1E-23 157.9 12.3 87 254-346 82-168 (271)
128 3gee_A MNME, tRNA modification 99.8 1.7E-18 5.9E-23 164.1 14.8 55 286-343 343-397 (476)
129 3ohm_A Guanine nucleotide-bind 99.8 2.3E-19 7.7E-24 161.3 8.0 86 263-348 210-322 (327)
130 3sjy_A Translation initiation 99.8 4.4E-18 1.5E-22 159.0 15.2 117 9-136 4-126 (403)
131 3qq5_A Small GTP-binding prote 99.8 1.5E-19 5.2E-24 168.5 5.2 189 4-264 25-220 (423)
132 3iby_A Ferrous iron transport 99.8 3.8E-19 1.3E-23 155.8 7.1 149 14-235 2-162 (256)
133 3cb4_D GTP-binding protein LEP 99.8 9E-18 3.1E-22 162.9 16.0 112 13-134 4-120 (599)
134 2ywe_A GTP-binding protein LEP 99.8 1.2E-17 4.1E-22 161.7 16.5 113 12-134 5-122 (600)
135 3i8s_A Ferrous iron transport 99.8 8.3E-19 2.8E-23 155.4 7.7 150 12-234 2-163 (274)
136 1cip_A Protein (guanine nucleo 99.8 3E-20 1E-24 169.6 -1.7 119 228-346 191-346 (353)
137 2h5e_A Peptide chain release f 99.7 5.9E-18 2E-22 162.6 12.4 110 11-123 11-120 (529)
138 1lnz_A SPO0B-associated GTP-bi 99.7 5.1E-18 1.7E-22 154.2 11.2 62 285-350 273-336 (342)
139 1dar_A EF-G, elongation factor 99.7 1.5E-17 5.2E-22 164.9 15.4 276 1-348 1-286 (691)
140 1s0u_A EIF-2-gamma, translatio 99.7 5.3E-17 1.8E-21 152.0 18.3 90 12-121 7-117 (408)
141 1ega_A Protein (GTP-binding pr 99.7 1.6E-17 5.5E-22 149.1 14.1 89 252-345 87-176 (301)
142 1xzp_A Probable tRNA modificat 99.7 1.9E-17 6.4E-22 157.1 12.5 82 253-343 323-404 (482)
143 1wb1_A Translation elongation 99.7 2.6E-17 8.8E-22 156.8 13.4 97 6-120 12-108 (482)
144 2ged_A SR-beta, signal recogni 99.7 2.7E-18 9.2E-23 143.9 5.9 124 10-199 45-173 (193)
145 2e87_A Hypothetical protein PH 99.7 5E-17 1.7E-21 149.5 14.9 88 254-344 247-336 (357)
146 1g7s_A Translation initiation 99.7 1.5E-17 5.3E-22 161.4 11.9 98 11-127 3-115 (594)
147 2rdo_7 EF-G, elongation factor 99.7 7.4E-17 2.5E-21 160.1 16.7 115 10-131 7-128 (704)
148 3izy_P Translation initiation 99.7 2.1E-18 7.1E-23 164.9 4.9 95 12-130 3-97 (537)
149 3geh_A MNME, tRNA modification 99.7 2.2E-17 7.7E-22 155.8 11.7 85 252-346 302-386 (462)
150 2xtz_A Guanine nucleotide-bind 99.7 2.5E-19 8.5E-24 163.4 -1.7 118 228-345 181-346 (354)
151 1kk1_A EIF2gamma; initiation o 99.7 9.4E-17 3.2E-21 150.4 15.7 92 10-121 7-119 (410)
152 2xex_A Elongation factor G; GT 99.7 1.8E-16 6E-21 157.3 16.9 135 10-197 7-142 (693)
153 2dy1_A Elongation factor G; tr 99.7 8.3E-16 2.8E-20 151.9 21.2 262 12-346 8-276 (665)
154 2hjg_A GTP-binding protein ENG 99.7 2E-17 6.8E-22 156.2 8.2 151 12-231 174-340 (436)
155 3t5d_A Septin-7; GTP-binding p 99.7 9.8E-17 3.3E-21 142.2 12.0 88 253-344 115-204 (274)
156 3vqt_A RF-3, peptide chain rel 99.7 4.7E-17 1.6E-21 156.9 10.5 163 11-223 29-191 (548)
157 1d2e_A Elongation factor TU (E 99.7 8.9E-17 3.1E-21 149.8 11.7 108 12-128 2-109 (397)
158 4fid_A G protein alpha subunit 99.7 1.1E-18 3.8E-23 157.4 -1.4 117 228-344 159-328 (340)
159 3l0i_B RAS-related protein RAB 99.7 2.3E-17 7.8E-22 139.1 6.5 118 228-345 80-197 (199)
160 2c78_A Elongation factor TU-A; 99.7 6.5E-17 2.2E-21 151.3 9.6 116 9-134 7-123 (405)
161 3p26_A Elongation factor 1 alp 99.7 4.2E-17 1.4E-21 155.8 8.1 179 11-230 31-228 (483)
162 4dcu_A GTP-binding protein ENG 99.7 5E-17 1.7E-21 154.3 7.1 154 11-233 193-362 (456)
163 3lxw_A GTPase IMAP family memb 99.7 3.8E-16 1.3E-20 136.1 11.8 60 286-345 139-209 (247)
164 2elf_A Protein translation elo 99.7 2.4E-16 8.4E-21 145.0 10.8 86 15-135 23-108 (370)
165 3j2k_7 ERF3, eukaryotic polype 99.7 3.5E-16 1.2E-20 147.5 11.7 179 10-231 14-216 (439)
166 3lxx_A GTPase IMAP family memb 99.6 5.3E-16 1.8E-20 134.7 9.9 92 9-123 25-127 (239)
167 2qtf_A Protein HFLX, GTP-bindi 99.6 2.2E-15 7.4E-20 138.3 13.9 93 254-346 258-356 (364)
168 3avx_A Elongation factor TS, e 99.6 7.2E-16 2.4E-20 156.3 11.6 106 9-124 292-398 (1289)
169 1zun_B Sulfate adenylate trans 99.6 1E-15 3.4E-20 144.4 11.7 174 11-230 22-214 (434)
170 1jny_A EF-1-alpha, elongation 99.6 1.3E-16 4.3E-21 150.5 4.4 179 12-230 5-203 (435)
171 3def_A T7I23.11 protein; chlor 99.6 2.1E-15 7.1E-20 132.7 11.5 102 11-137 34-145 (262)
172 2h17_A ADP-ribosylation factor 99.6 9.4E-16 3.2E-20 127.1 8.7 112 229-342 64-181 (181)
173 1r5b_A Eukaryotic peptide chai 99.6 3.6E-16 1.2E-20 148.5 6.8 178 11-231 41-243 (467)
174 3izq_1 HBS1P, elongation facto 99.6 6.1E-16 2.1E-20 151.1 8.1 178 11-230 165-362 (611)
175 1zo1_I IF2, translation initia 99.6 5.9E-16 2E-20 146.8 7.6 149 12-230 3-157 (501)
176 2qag_A Septin-2, protein NEDD5 99.6 2.5E-16 8.5E-21 144.7 4.6 155 12-226 36-220 (361)
177 1f60_A Elongation factor EEF1A 99.6 1.2E-15 4E-20 144.7 7.9 173 11-229 5-201 (458)
178 2xtp_A GTPase IMAP family memb 99.6 5.4E-15 1.8E-19 129.9 11.1 86 10-120 19-117 (260)
179 1pui_A ENGB, probable GTP-bind 99.6 5.8E-15 2E-19 125.2 10.8 87 255-345 110-200 (210)
180 2aka_B Dynamin-1; fusion prote 99.6 3.3E-15 1.1E-19 134.0 9.5 103 85-231 125-244 (299)
181 1moz_A ARL1, ADP-ribosylation 99.6 1.8E-15 6E-20 125.4 6.9 114 229-344 61-180 (183)
182 1h65_A Chloroplast outer envel 99.6 1.1E-14 3.9E-19 128.6 11.4 101 11-136 37-147 (270)
183 1mky_A Probable GTP-binding pr 99.6 8E-15 2.7E-19 138.5 10.2 152 12-232 179-347 (439)
184 1azs_C GS-alpha; complex (lyas 99.6 3.5E-15 1.2E-19 137.6 7.2 74 84-197 216-299 (402)
185 1zcb_A G alpha I/13; GTP-bindi 99.6 2.7E-15 9.1E-20 137.3 6.1 108 84-231 200-344 (362)
186 4fn5_A EF-G 1, elongation fact 99.5 1.1E-14 3.8E-19 145.1 10.3 135 12-196 12-151 (709)
187 3th5_A RAS-related C3 botulinu 99.3 4.6E-16 1.6E-20 131.5 0.0 114 228-342 76-203 (204)
188 3mca_A HBS1, elongation factor 99.5 1.8E-15 6.3E-20 147.3 4.2 110 11-122 175-292 (592)
189 3j25_A Tetracycline resistance 99.5 2E-15 7E-20 148.4 3.4 132 14-197 3-134 (638)
190 1zcb_A G alpha I/13; GTP-bindi 99.5 1.2E-14 4.1E-19 133.0 7.8 119 228-346 199-355 (362)
191 1azs_C GS-alpha; complex (lyas 99.5 2.5E-14 8.4E-19 131.9 8.2 118 228-345 215-386 (402)
192 3t34_A Dynamin-related protein 99.5 2.9E-14 9.9E-19 131.2 8.4 102 85-229 136-250 (360)
193 2qnr_A Septin-2, protein NEDD5 99.5 1.9E-14 6.4E-19 128.9 6.7 60 285-345 154-215 (301)
194 1udx_A The GTP-binding protein 99.5 2.3E-13 7.9E-18 126.4 12.9 92 254-348 236-329 (416)
195 4a9a_A Ribosome-interacting GT 99.5 3.5E-13 1.2E-17 123.2 13.5 225 12-346 71-302 (376)
196 1u0l_A Probable GTPase ENGC; p 99.5 1.7E-13 5.8E-18 122.8 10.1 105 231-342 64-171 (301)
197 1n0u_A EF-2, elongation factor 99.5 1.5E-13 5.2E-18 139.0 10.6 117 10-133 16-146 (842)
198 1jwy_B Dynamin A GTPase domain 99.5 2E-13 6.8E-18 123.3 10.0 28 11-38 22-49 (315)
199 1wxq_A GTP-binding protein; st 99.4 2.6E-13 9E-18 125.8 10.5 103 14-134 1-138 (397)
200 2qag_C Septin-7; cell cycle, c 99.4 2.6E-13 8.8E-18 126.2 9.7 164 12-235 30-222 (418)
201 1u0l_A Probable GTPase ENGC; p 99.4 8.7E-14 3E-18 124.7 6.2 128 51-230 32-163 (301)
202 2j69_A Bacterial dynamin-like 99.4 1.7E-13 5.9E-18 135.9 8.4 49 86-134 175-226 (695)
203 2hf9_A Probable hydrogenase ni 99.4 5.1E-14 1.7E-18 120.8 3.5 60 286-345 164-225 (226)
204 1cip_A Protein (guanine nucleo 99.4 1.2E-13 4.1E-18 125.9 5.8 122 66-231 178-335 (353)
205 3r7w_A Gtpase1, GTP-binding pr 99.4 5.7E-13 1.9E-17 119.8 9.5 115 229-344 51-181 (307)
206 2x2e_A Dynamin-1; nitration, h 99.4 2.6E-13 8.9E-18 124.4 6.3 29 11-39 29-57 (353)
207 2qpt_A EH domain-containing pr 99.4 4.9E-13 1.7E-17 129.1 7.8 140 11-198 63-234 (550)
208 2wsm_A Hydrogenase expression/ 99.4 2.1E-12 7.2E-17 110.3 9.5 62 286-347 154-217 (221)
209 3l82_B F-box only protein 4; T 99.3 1.3E-12 4.3E-17 108.0 7.0 107 237-346 109-225 (227)
210 1jal_A YCHF protein; nucleotid 99.3 5.2E-12 1.8E-16 114.8 11.1 83 14-120 3-108 (363)
211 2xtz_A Guanine nucleotide-bind 99.3 5.1E-13 1.8E-17 121.7 3.0 109 83-231 181-336 (354)
212 3p32_A Probable GTPase RV1496/ 99.3 1.6E-12 5.6E-17 119.2 6.1 104 229-344 171-284 (355)
213 2yv5_A YJEQ protein; hydrolase 99.2 2.2E-11 7.7E-16 108.9 7.8 100 240-342 66-167 (302)
214 4fid_A G protein alpha subunit 99.2 6.5E-12 2.2E-16 113.2 4.0 88 65-196 145-242 (340)
215 3l2o_B F-box only protein 4; s 99.2 1.4E-11 4.8E-16 106.8 5.9 107 237-346 194-310 (312)
216 3qq5_A Small GTP-binding prote 99.2 2.4E-11 8.3E-16 113.2 7.9 107 231-345 84-197 (423)
217 3c5h_A Glucocorticoid receptor 99.2 4.5E-12 1.5E-16 110.8 2.8 158 9-230 15-245 (255)
218 3iby_A Ferrous iron transport 99.2 7.1E-12 2.4E-16 109.5 2.7 105 230-341 48-164 (256)
219 2dby_A GTP-binding protein; GD 99.1 7.2E-11 2.5E-15 108.0 7.7 89 14-120 2-111 (368)
220 3i8s_A Ferrous iron transport 99.1 1.3E-11 4.4E-16 109.1 2.3 109 230-345 50-170 (274)
221 2www_A Methylmalonic aciduria 99.1 2.3E-10 7.8E-15 104.5 10.7 102 230-343 167-278 (349)
222 1yrb_A ATP(GTP)binding protein 99.1 4.9E-10 1.7E-14 98.1 11.1 113 230-343 109-256 (262)
223 1nrj_B SR-beta, signal recogni 99.1 2.6E-11 9.1E-16 103.1 2.6 103 228-330 53-170 (218)
224 1zo1_I IF2, translation initia 99.0 5.8E-11 2E-15 112.6 3.1 109 230-342 51-165 (501)
225 3zvr_A Dynamin-1; hydrolase, D 99.0 7.3E-10 2.5E-14 109.5 9.6 102 86-231 151-269 (772)
226 2ohf_A Protein OLA1, GTP-bindi 99.0 2.3E-10 7.7E-15 105.1 5.3 91 12-125 21-133 (396)
227 3j2k_7 ERF3, eukaryotic polype 99.0 5.9E-10 2E-14 104.9 8.0 109 228-336 93-217 (439)
228 1zun_B Sulfate adenylate trans 99.0 1.5E-09 5E-14 102.2 9.4 102 229-334 103-214 (434)
229 2p67_A LAO/AO transport system 98.9 8.6E-11 2.9E-15 107.0 -0.4 96 84-231 148-252 (341)
230 1r5b_A Eukaryotic peptide chai 98.9 2.7E-10 9.2E-15 108.1 2.3 107 229-335 120-243 (467)
231 3p26_A Elongation factor 1 alp 98.9 1.5E-09 5E-14 103.6 7.0 105 228-333 109-227 (483)
232 2qm8_A GTPase/ATPase; G protei 98.8 1.2E-08 4.1E-13 92.6 9.8 103 230-343 148-260 (337)
233 1jny_A EF-1-alpha, elongation 98.8 1.7E-09 5.9E-14 101.7 2.8 105 228-333 82-202 (435)
234 2aka_B Dynamin-1; fusion prote 98.8 2.4E-09 8.1E-14 95.6 2.8 109 230-341 125-250 (299)
235 3izq_1 HBS1P, elongation facto 98.8 4.7E-09 1.6E-13 102.5 5.1 107 228-334 243-362 (611)
236 1f60_A Elongation factor EEF1A 98.7 4.8E-09 1.6E-13 99.2 4.4 102 228-333 83-201 (458)
237 2yv5_A YJEQ protein; hydrolase 98.7 1.6E-08 5.5E-13 90.3 7.5 92 95-230 66-159 (302)
238 2qag_A Septin-2, protein NEDD5 98.7 3.3E-09 1.1E-13 97.2 1.8 108 229-342 94-231 (361)
239 3h2y_A GTPase family protein; 98.7 2.1E-08 7.3E-13 92.0 6.7 98 239-343 55-159 (368)
240 3mca_A HBS1, elongation factor 98.7 1.5E-09 5.2E-14 105.7 -1.8 114 229-345 254-398 (592)
241 2xtp_A GTPase IMAP family memb 98.6 3E-08 1E-12 86.6 4.3 115 229-345 70-209 (260)
242 2j69_A Bacterial dynamin-like 98.5 5E-08 1.7E-12 96.8 5.3 112 231-345 175-326 (695)
243 3ec1_A YQEH GTPase; atnos1, at 98.5 3.4E-08 1.1E-12 90.7 3.8 98 239-343 57-161 (369)
244 1ni3_A YCHF GTPase, YCHF GTP-b 98.5 1.4E-07 4.8E-12 86.8 7.6 87 11-120 18-127 (392)
245 3lxx_A GTPase IMAP family memb 98.5 1.1E-07 3.6E-12 82.0 6.3 114 229-344 77-214 (239)
246 2fh5_B SR-beta, signal recogni 98.5 3.6E-08 1.2E-12 83.3 3.2 73 229-301 53-130 (214)
247 3ec1_A YQEH GTPase; atnos1, at 98.5 2.1E-07 7.1E-12 85.5 7.5 24 13-36 162-185 (369)
248 3h2y_A GTPase family protein; 98.5 1.3E-07 4.4E-12 86.8 6.0 25 13-37 160-184 (368)
249 2j37_W Signal recognition part 98.5 4.5E-07 1.5E-11 86.1 9.2 101 230-341 184-310 (504)
250 2ged_A SR-beta, signal recogni 98.4 2.3E-07 8E-12 76.7 5.2 76 228-303 89-173 (193)
251 3l82_B F-box only protein 4; T 98.4 3.8E-07 1.3E-11 75.4 5.4 100 91-229 108-212 (227)
252 1jwy_B Dynamin A GTPase domain 98.4 4.8E-07 1.7E-11 81.2 6.5 113 230-345 131-263 (315)
253 3t34_A Dynamin-related protein 98.3 1.1E-07 3.6E-12 87.3 1.5 108 231-340 137-257 (360)
254 1puj_A YLQF, conserved hypothe 98.3 6.8E-07 2.3E-11 78.8 5.0 99 237-343 6-105 (282)
255 2qag_B Septin-6, protein NEDD5 98.2 6.1E-06 2.1E-10 76.4 10.9 25 13-37 42-66 (427)
256 2qag_C Septin-7; cell cycle, c 98.2 1E-06 3.4E-11 81.9 5.3 93 248-344 131-227 (418)
257 1g7s_A Translation initiation 98.2 1.5E-06 5.3E-11 84.3 6.6 95 231-339 71-165 (594)
258 2h5e_A Peptide chain release f 98.2 1.5E-06 5E-11 83.5 6.3 109 228-342 80-193 (529)
259 3sop_A Neuronal-specific septi 98.1 1.2E-05 4.2E-10 70.3 10.0 25 13-37 2-26 (270)
260 3dm5_A SRP54, signal recogniti 98.1 9.3E-06 3.2E-10 75.5 9.6 93 230-334 183-281 (443)
261 2x2e_A Dynamin-1; nitration, h 98.1 1.6E-07 5.3E-12 85.9 -2.3 108 230-340 130-254 (353)
262 1wxq_A GTP-binding protein; st 98.1 6.3E-07 2.1E-11 82.9 1.0 53 286-343 214-270 (397)
263 3cnl_A YLQF, putative uncharac 98.1 1.7E-06 5.9E-11 75.4 3.6 25 14-38 100-124 (262)
264 1puj_A YLQF, conserved hypothe 98.0 4E-06 1.4E-10 73.9 5.3 26 12-37 119-144 (282)
265 3l2o_B F-box only protein 4; s 98.0 1.8E-06 6.3E-11 74.9 2.6 99 91-228 193-296 (312)
266 3tr5_A RF-3, peptide chain rel 98.0 1.8E-05 6.1E-10 75.9 9.2 88 228-321 80-167 (528)
267 2p67_A LAO/AO transport system 98.0 2.6E-06 9E-11 77.3 2.9 104 229-343 148-260 (341)
268 1t9h_A YLOQ, probable GTPase E 97.9 3.7E-06 1.3E-10 74.7 3.3 90 246-338 79-171 (307)
269 3zvr_A Dynamin-1; hydrolase, D 97.9 3.5E-06 1.2E-10 83.4 2.7 107 231-340 151-274 (772)
270 1n0u_A EF-2, elongation factor 97.8 1.2E-05 4.2E-10 81.4 5.5 68 228-299 96-163 (842)
271 3def_A T7I23.11 protein; chlor 97.8 3.6E-05 1.2E-09 67.0 7.7 76 228-303 82-168 (262)
272 2xex_A Elongation factor G; GT 97.8 3.5E-06 1.2E-10 83.5 0.8 69 229-301 74-142 (693)
273 3cnl_A YLQF, putative uncharac 97.8 1.1E-05 3.9E-10 70.1 3.4 84 247-341 15-98 (262)
274 2rcn_A Probable GTPase ENGC; Y 97.8 6.5E-05 2.2E-09 68.0 8.1 86 250-338 127-213 (358)
275 1f5n_A Interferon-induced guan 97.7 3.9E-05 1.3E-09 74.0 6.9 27 11-37 36-62 (592)
276 3kl4_A SRP54, signal recogniti 97.7 8E-05 2.7E-09 69.2 8.2 68 253-332 211-278 (433)
277 4dkx_A RAS-related protein RAB 97.7 4.4E-05 1.5E-09 64.4 5.3 54 226-279 58-111 (216)
278 1h65_A Chloroplast outer envel 97.7 0.00015 5E-09 63.4 8.8 76 228-304 85-172 (270)
279 1dar_A EF-G, elongation factor 97.6 0.0001 3.6E-09 73.0 8.4 69 229-301 76-144 (691)
280 1j8m_F SRP54, signal recogniti 97.6 0.00016 5.5E-09 64.0 8.6 92 230-334 181-281 (297)
281 2b6h_A ADP-ribosylation factor 97.5 0.0002 6.7E-09 59.0 7.3 115 228-344 71-191 (192)
282 2rdo_7 EF-G, elongation factor 97.5 0.00019 6.6E-09 71.2 8.2 69 229-301 81-149 (704)
283 2v3c_C SRP54, signal recogniti 97.5 5.3E-05 1.8E-09 70.7 3.5 24 13-36 99-122 (432)
284 1tq4_A IIGP1, interferon-induc 97.5 0.00049 1.7E-08 63.6 9.9 24 14-37 70-93 (413)
285 3p32_A Probable GTPase RV1496/ 97.5 6.2E-05 2.1E-09 68.6 3.9 96 84-231 171-275 (355)
286 1bif_A 6-phosphofructo-2-kinas 97.4 1.8E-05 6.2E-10 75.0 -0.5 100 12-136 38-147 (469)
287 2elf_A Protein translation elo 97.4 0.00013 4.5E-09 66.7 4.7 110 229-344 59-180 (370)
288 3q5d_A Atlastin-1; G protein, 97.4 0.00029 9.9E-09 65.7 6.9 26 11-36 65-90 (447)
289 3q3j_B RHO-related GTP-binding 97.4 0.00045 1.5E-08 57.9 7.6 74 226-300 71-145 (214)
290 2hxs_A RAB-26, RAS-related pro 97.3 0.00021 7.3E-09 57.6 5.2 54 229-282 55-108 (178)
291 3t5g_A GTP-binding protein RHE 97.3 0.00083 2.8E-08 54.3 8.2 53 227-279 51-103 (181)
292 1f6b_A SAR1; gtpases, N-termin 97.3 0.00045 1.5E-08 57.1 6.6 112 229-342 68-197 (198)
293 3t1o_A Gliding protein MGLA; G 97.3 0.00021 7E-09 58.7 4.3 48 181-230 134-182 (198)
294 3tw8_B RAS-related protein RAB 97.2 0.00097 3.3E-08 53.7 8.2 52 228-279 56-107 (181)
295 1m7b_A RND3/RHOE small GTP-bin 97.2 0.0008 2.7E-08 54.7 7.6 74 226-300 51-125 (184)
296 1m2o_B GTP-binding protein SAR 97.2 0.00076 2.6E-08 55.3 7.4 112 229-342 66-190 (190)
297 1r8s_A ADP-ribosylation factor 97.2 0.00031 1.1E-08 55.7 4.8 116 228-345 42-163 (164)
298 4bas_A ADP-ribosylation factor 97.2 0.00057 2E-08 56.1 6.5 125 227-351 60-196 (199)
299 1upt_A ARL1, ADP-ribosylation 97.2 0.00075 2.6E-08 53.8 7.1 116 229-344 50-169 (171)
300 3reg_A RHO-like small GTPase; 97.2 0.00086 2.9E-08 55.0 7.3 122 226-348 67-192 (194)
301 3q72_A GTP-binding protein RAD 97.2 0.00083 2.8E-08 53.3 7.0 54 226-279 45-98 (166)
302 2j0v_A RAC-like GTP-binding pr 97.2 0.00049 1.7E-08 57.4 5.9 74 227-301 54-128 (212)
303 2q3h_A RAS homolog gene family 97.2 0.00091 3.1E-08 55.1 7.5 72 228-300 66-138 (201)
304 2fu5_C RAS-related protein RAB 97.2 0.00051 1.7E-08 55.7 5.8 48 228-275 55-102 (183)
305 1gwn_A RHO-related GTP-binding 97.2 0.00095 3.3E-08 55.5 7.6 73 227-300 73-146 (205)
306 2dy1_A Elongation factor G; tr 97.2 0.0006 2.1E-08 67.3 7.2 90 229-325 73-165 (665)
307 3kkq_A RAS-related protein M-R 97.2 0.00062 2.1E-08 55.2 6.1 54 226-279 62-115 (183)
308 1ksh_A ARF-like protein 2; sma 97.2 0.00059 2E-08 55.5 6.0 116 228-345 60-181 (186)
309 1zj6_A ADP-ribosylation factor 97.2 0.00057 1.9E-08 55.7 5.9 120 228-349 58-183 (187)
310 3vqt_A RF-3, peptide chain rel 97.1 0.0012 4.2E-08 63.4 9.0 70 228-301 98-167 (548)
311 2x77_A ADP-ribosylation factor 97.1 0.00084 2.9E-08 54.7 6.9 116 228-345 64-185 (189)
312 2atx_A Small GTP binding prote 97.1 0.00058 2E-08 56.0 5.9 73 228-301 64-137 (194)
313 1mh1_A RAC1; GTP-binding, GTPa 97.1 0.001 3.5E-08 53.8 7.2 73 227-300 50-123 (186)
314 3oes_A GTPase rhebl1; small GT 97.1 0.00095 3.2E-08 55.1 7.1 54 227-280 69-122 (201)
315 2qpt_A EH domain-containing pr 97.1 0.00013 4.6E-09 70.2 2.0 70 231-303 155-235 (550)
316 2wkq_A NPH1-1, RAS-related C3 97.1 0.0016 5.6E-08 58.1 8.9 73 227-300 200-273 (332)
317 2g3y_A GTP-binding protein GEM 97.1 0.00011 3.7E-09 61.7 0.8 50 182-231 145-194 (211)
318 1jal_A YCHF protein; nucleotid 97.1 0.0085 2.9E-07 54.3 13.3 58 285-342 198-277 (363)
319 1wms_A RAB-9, RAB9, RAS-relate 97.1 0.0014 4.7E-08 52.6 7.4 56 228-283 54-109 (177)
320 1x3s_A RAS-related protein RAB 97.1 0.00082 2.8E-08 54.9 6.2 54 227-280 61-114 (195)
321 2hup_A RAS-related protein RAB 97.1 0.00069 2.4E-08 56.1 5.7 51 228-278 76-126 (201)
322 3gj0_A GTP-binding nuclear pro 97.1 0.0011 3.7E-08 55.7 6.9 119 226-347 60-178 (221)
323 3c5c_A RAS-like protein 12; GD 97.1 0.0012 4.1E-08 53.9 7.0 55 227-282 66-120 (187)
324 1z2a_A RAS-related protein RAB 97.1 0.00073 2.5E-08 53.7 5.5 116 228-344 52-167 (168)
325 1fzq_A ADP-ribosylation factor 97.1 0.00061 2.1E-08 55.3 5.1 116 229-346 59-180 (181)
326 2ew1_A RAS-related protein RAB 97.1 0.0015 5E-08 54.2 7.5 120 228-347 73-192 (201)
327 1z06_A RAS-related protein RAB 97.0 0.00057 1.9E-08 55.8 4.7 52 228-279 67-119 (189)
328 3szr_A Interferon-induced GTP- 97.0 0.0014 4.8E-08 64.0 8.0 23 15-37 47-69 (608)
329 3bwd_D RAC-like GTP-binding pr 97.0 0.0006 2.1E-08 55.1 4.6 73 228-301 54-127 (182)
330 1z08_A RAS-related protein RAB 97.0 0.0011 3.6E-08 52.9 6.0 51 228-278 53-103 (170)
331 1c1y_A RAS-related protein RAP 97.0 0.00076 2.6E-08 53.5 5.1 53 227-279 48-100 (167)
332 3clv_A RAB5 protein, putative; 97.0 0.00083 2.8E-08 55.2 5.4 114 228-344 91-204 (208)
333 4gzl_A RAS-related C3 botulinu 97.0 0.0015 5.2E-08 54.1 7.1 74 227-301 75-149 (204)
334 2bcg_Y Protein YP2, GTP-bindin 97.0 0.0011 3.7E-08 55.0 6.1 51 228-278 55-105 (206)
335 2g6b_A RAS-related protein RAB 97.0 0.00097 3.3E-08 53.7 5.6 48 228-275 58-105 (180)
336 3bc1_A RAS-related protein RAB 97.0 0.00073 2.5E-08 55.1 4.9 53 229-281 69-121 (195)
337 1u8z_A RAS-related protein RAL 97.0 0.00097 3.3E-08 52.8 5.4 53 227-279 49-101 (168)
338 1zd9_A ADP-ribosylation factor 97.0 0.00079 2.7E-08 55.0 4.9 117 228-346 65-187 (188)
339 3cpj_B GTP-binding protein YPT 96.9 0.001 3.6E-08 55.9 5.7 52 228-279 60-111 (223)
340 2fn4_A P23, RAS-related protei 96.9 0.0013 4.4E-08 52.9 6.1 50 228-277 55-104 (181)
341 2gco_A H9, RHO-related GTP-bin 96.9 0.0013 4.4E-08 54.3 6.2 73 228-301 71-144 (201)
342 3con_A GTPase NRAS; structural 96.9 0.0023 8E-08 52.0 7.6 52 228-279 67-118 (190)
343 1ek0_A Protein (GTP-binding pr 96.9 0.0015 5E-08 51.9 6.3 118 227-344 49-169 (170)
344 2efe_B Small GTP-binding prote 96.9 0.0011 3.8E-08 53.4 5.5 48 228-275 59-106 (181)
345 2yc2_C IFT27, small RAB-relate 96.9 0.00091 3.1E-08 55.3 5.0 55 229-283 72-126 (208)
346 4dsu_A GTPase KRAS, isoform 2B 96.9 0.0014 4.7E-08 53.2 6.0 117 227-344 49-166 (189)
347 2gf9_A RAS-related protein RAB 96.9 0.0014 4.8E-08 53.4 6.0 51 228-278 69-119 (189)
348 1r2q_A RAS-related protein RAB 96.9 0.0017 5.7E-08 51.6 6.3 117 228-344 53-169 (170)
349 2a5j_A RAS-related protein RAB 96.9 0.001 3.5E-08 54.4 5.0 51 228-278 68-118 (191)
350 2j1l_A RHO-related GTP-binding 96.9 0.0014 4.7E-08 54.8 5.9 73 228-301 80-153 (214)
351 1vg8_A RAS-related protein RAB 96.9 0.0026 9E-08 52.5 7.6 117 228-345 55-176 (207)
352 2a9k_A RAS-related protein RAL 96.9 0.0013 4.4E-08 53.2 5.4 52 228-279 64-115 (187)
353 2dby_A GTP-binding protein; GD 96.9 0.0049 1.7E-07 56.1 9.7 45 286-330 201-248 (368)
354 3dz8_A RAS-related protein RAB 96.9 0.0003 1E-08 57.6 1.6 49 182-230 128-176 (191)
355 3q85_A GTP-binding protein REM 96.8 0.0015 5.2E-08 51.9 5.7 53 227-279 48-101 (169)
356 2fv8_A H6, RHO-related GTP-bin 96.8 0.0025 8.4E-08 52.9 7.2 73 228-301 71-144 (207)
357 2bme_A RAB4A, RAS-related prot 96.8 0.0019 6.5E-08 52.3 6.4 120 228-347 57-176 (186)
358 1yrb_A ATP(GTP)binding protein 96.8 0.00041 1.4E-08 60.0 2.4 25 11-35 12-36 (262)
359 2fg5_A RAB-22B, RAS-related pr 96.8 0.0025 8.5E-08 52.1 6.9 52 227-278 69-120 (192)
360 2bov_A RAla, RAS-related prote 96.8 0.0015 5E-08 54.0 5.4 53 227-279 59-111 (206)
361 1ky3_A GTP-binding protein YPT 96.8 0.0013 4.5E-08 52.9 5.1 118 228-345 56-179 (182)
362 3cbq_A GTP-binding protein REM 96.8 0.0013 4.5E-08 54.1 5.1 53 227-279 69-122 (195)
363 2oil_A CATX-8, RAS-related pro 96.8 0.0025 8.6E-08 52.0 6.7 119 227-345 71-189 (193)
364 3tkl_A RAS-related protein RAB 96.8 0.0019 6.6E-08 52.7 6.0 52 228-279 63-114 (196)
365 1ye8_A Protein THEP1, hypothet 96.8 0.00066 2.2E-08 55.3 3.0 22 14-35 1-22 (178)
366 1zbd_A Rabphilin-3A; G protein 96.8 0.0023 8E-08 52.7 6.3 49 227-275 54-102 (203)
367 3ohm_A Guanine nucleotide-bind 96.8 0.001 3.5E-08 59.4 4.4 56 228-283 165-227 (327)
368 1g16_A RAS-related protein SEC 96.8 0.0011 3.9E-08 52.6 4.3 117 228-345 50-166 (170)
369 2y8e_A RAB-protein 6, GH09086P 96.8 0.0024 8.2E-08 51.2 6.2 50 228-277 61-110 (179)
370 1z0j_A RAB-22, RAS-related pro 96.7 0.003 1E-07 50.1 6.6 49 227-275 52-100 (170)
371 1kao_A RAP2A; GTP-binding prot 96.7 0.0019 6.6E-08 51.0 5.4 52 228-279 49-100 (167)
372 3ihw_A Centg3; RAS, centaurin, 96.7 0.0025 8.6E-08 51.8 6.1 116 227-347 64-183 (184)
373 2ce2_X GTPase HRAS; signaling 96.7 0.0022 7.4E-08 50.6 5.6 52 228-279 49-100 (166)
374 3cph_A RAS-related protein SEC 96.7 0.0017 5.7E-08 54.0 5.1 117 228-345 67-183 (213)
375 2o52_A RAS-related protein RAB 96.7 0.0029 9.8E-08 52.2 6.5 50 228-277 72-121 (200)
376 2erx_A GTP-binding protein DI- 96.7 0.0015 5.1E-08 52.0 4.6 54 228-281 49-102 (172)
377 2xxa_A Signal recognition part 96.7 0.00082 2.8E-08 62.6 3.3 23 13-35 100-122 (433)
378 1z0f_A RAB14, member RAS oncog 96.7 0.0013 4.5E-08 52.7 4.1 48 228-275 62-109 (179)
379 2h57_A ADP-ribosylation factor 96.7 0.002 6.8E-08 52.6 5.2 115 229-345 66-188 (190)
380 4fn5_A EF-G 1, elongation fact 96.7 0.0021 7.1E-08 64.0 6.2 68 228-299 83-150 (709)
381 2iwr_A Centaurin gamma 1; ANK 96.7 0.00062 2.1E-08 54.9 2.0 51 180-230 106-159 (178)
382 2f7s_A C25KG, RAS-related prot 96.6 0.00067 2.3E-08 56.7 2.0 51 229-279 83-133 (217)
383 2gf0_A GTP-binding protein DI- 96.6 0.0018 6.3E-08 53.0 4.6 55 227-281 53-107 (199)
384 2il1_A RAB12; G-protein, GDP, 96.6 0.0019 6.5E-08 52.9 4.7 117 228-344 73-190 (192)
385 2p5s_A RAS and EF-hand domain 96.6 0.0011 3.9E-08 54.5 3.2 117 228-344 75-197 (199)
386 1kgd_A CASK, peripheral plasma 96.5 0.0013 4.4E-08 53.5 3.1 23 14-36 6-28 (180)
387 3llu_A RAS-related GTP-binding 96.5 0.0018 6.1E-08 53.2 4.0 114 228-343 67-196 (196)
388 3ney_A 55 kDa erythrocyte memb 96.5 0.0014 4.8E-08 54.1 3.2 26 11-36 17-42 (197)
389 2nzj_A GTP-binding protein REM 96.5 0.0043 1.5E-07 49.4 6.0 52 228-279 50-103 (175)
390 1lvg_A Guanylate kinase, GMP k 96.5 0.0013 4.3E-08 54.5 2.8 21 15-35 6-26 (198)
391 2atv_A RERG, RAS-like estrogen 96.5 0.0033 1.1E-07 51.5 5.3 52 227-279 73-124 (196)
392 3lvq_E ARF-GAP with SH3 domain 96.5 0.0037 1.3E-07 59.4 6.3 122 228-351 364-491 (497)
393 4djt_A GTP-binding nuclear pro 96.4 0.0029 1E-07 52.8 4.9 50 229-278 60-109 (218)
394 2cxx_A Probable GTP-binding pr 96.3 0.0037 1.3E-07 50.7 4.7 145 14-230 2-174 (190)
395 1zp6_A Hypothetical protein AT 96.3 0.0022 7.6E-08 52.4 3.3 22 14-35 10-31 (191)
396 1t9h_A YLOQ, probable GTPase E 96.3 0.0042 1.4E-07 55.0 5.3 85 100-228 78-165 (307)
397 3o47_A ADP-ribosylation factor 96.3 0.0032 1.1E-07 56.5 4.5 116 228-345 207-328 (329)
398 3r7w_B Gtpase2, GTP-binding pr 96.3 0.0027 9.1E-08 56.6 3.8 113 230-345 46-175 (331)
399 3a00_A Guanylate kinase, GMP k 96.3 0.002 6.9E-08 52.6 2.8 21 16-36 4-24 (186)
400 1s96_A Guanylate kinase, GMP k 96.3 0.002 6.9E-08 54.2 2.8 22 15-36 18-39 (219)
401 3tr0_A Guanylate kinase, GMP k 96.2 0.0021 7.1E-08 53.2 2.8 22 15-36 9-30 (205)
402 2wji_A Ferrous iron transport 96.2 0.0006 2E-08 54.5 -0.5 146 12-230 2-155 (165)
403 2zej_A Dardarin, leucine-rich 96.2 0.0016 5.6E-08 52.8 2.1 119 228-347 54-181 (184)
404 4gp7_A Metallophosphoesterase; 96.2 0.0021 7.2E-08 51.8 2.6 21 15-35 11-31 (171)
405 1znw_A Guanylate kinase, GMP k 96.2 0.0023 7.7E-08 53.3 2.8 21 15-35 22-42 (207)
406 1ex7_A Guanylate kinase; subst 96.2 0.0024 8.1E-08 52.3 2.8 21 16-36 4-24 (186)
407 1z6g_A Guanylate kinase; struc 96.2 0.0023 8E-08 53.8 2.8 22 15-36 25-46 (218)
408 3c8u_A Fructokinase; YP_612366 96.2 0.0028 9.6E-08 52.8 3.3 24 12-35 21-44 (208)
409 3j25_A Tetracycline resistance 96.1 0.0015 5.2E-08 64.1 1.4 117 228-348 65-243 (638)
410 3tau_A Guanylate kinase, GMP k 96.1 0.0028 9.5E-08 52.8 2.8 22 15-36 10-31 (208)
411 2qor_A Guanylate kinase; phosp 96.0 0.0034 1.2E-07 52.0 2.8 22 14-35 13-34 (204)
412 2qt1_A Nicotinamide riboside k 95.9 0.0059 2E-07 50.6 4.2 28 8-35 16-43 (207)
413 2cdn_A Adenylate kinase; phosp 95.9 0.0044 1.5E-07 51.2 3.3 27 9-35 16-42 (201)
414 3lw7_A Adenylate kinase relate 95.9 0.0039 1.3E-07 49.9 2.9 20 14-33 2-21 (179)
415 1kag_A SKI, shikimate kinase I 95.9 0.0038 1.3E-07 50.0 2.8 21 15-35 6-26 (173)
416 3tif_A Uncharacterized ABC tra 95.9 0.0037 1.3E-07 53.2 2.8 21 15-35 33-53 (235)
417 3t61_A Gluconokinase; PSI-biol 95.9 0.0035 1.2E-07 51.8 2.5 22 14-35 19-40 (202)
418 2j41_A Guanylate kinase; GMP, 95.9 0.004 1.4E-07 51.5 2.8 24 14-37 7-30 (207)
419 3fb4_A Adenylate kinase; psych 95.8 0.0043 1.5E-07 51.8 2.9 22 14-35 1-22 (216)
420 2cjw_A GTP-binding protein GEM 95.8 0.016 5.5E-07 47.3 6.4 52 228-279 54-106 (192)
421 2i3b_A HCR-ntpase, human cance 95.8 0.0037 1.3E-07 51.3 2.5 21 15-35 3-23 (189)
422 1htw_A HI0065; nucleotide-bind 95.8 0.0045 1.5E-07 49.2 2.8 23 15-37 35-57 (158)
423 2pcj_A ABC transporter, lipopr 95.8 0.0041 1.4E-07 52.5 2.7 21 15-35 32-52 (224)
424 3kb2_A SPBC2 prophage-derived 95.8 0.0047 1.6E-07 49.3 3.0 21 15-35 3-23 (173)
425 3asz_A Uridine kinase; cytidin 95.8 0.0051 1.7E-07 51.1 3.3 23 13-35 6-28 (211)
426 3dl0_A Adenylate kinase; phosp 95.8 0.0044 1.5E-07 51.7 2.9 22 14-35 1-22 (216)
427 2bdt_A BH3686; alpha-beta prot 95.8 0.0046 1.6E-07 50.4 2.8 21 15-35 4-24 (189)
428 1ly1_A Polynucleotide kinase; 95.8 0.0046 1.6E-07 49.8 2.8 22 14-35 3-24 (181)
429 3sr0_A Adenylate kinase; phosp 95.8 0.0051 1.7E-07 51.2 3.0 22 14-35 1-22 (206)
430 4eun_A Thermoresistant glucoki 95.8 0.0047 1.6E-07 51.0 2.8 22 14-35 30-51 (200)
431 2bbw_A Adenylate kinase 4, AK4 95.7 0.005 1.7E-07 52.6 3.0 21 14-34 28-48 (246)
432 1np6_A Molybdopterin-guanine d 95.7 0.0049 1.7E-07 49.8 2.8 21 15-35 8-28 (174)
433 2onk_A Molybdate/tungstate ABC 95.7 0.0049 1.7E-07 52.6 2.9 22 15-36 26-47 (240)
434 2if2_A Dephospho-COA kinase; a 95.7 0.0055 1.9E-07 50.6 3.0 22 14-35 2-23 (204)
435 2cbz_A Multidrug resistance-as 95.7 0.0056 1.9E-07 52.1 3.1 21 15-35 33-53 (237)
436 1sgw_A Putative ABC transporte 95.7 0.0053 1.8E-07 51.4 2.8 21 15-35 37-57 (214)
437 3b85_A Phosphate starvation-in 95.7 0.005 1.7E-07 51.3 2.6 21 15-35 24-44 (208)
438 2v9p_A Replication protein E1; 95.6 0.0056 1.9E-07 54.1 3.0 21 15-35 128-148 (305)
439 2jaq_A Deoxyguanosine kinase; 95.6 0.0059 2E-07 50.3 3.0 21 15-35 2-22 (205)
440 1b0u_A Histidine permease; ABC 95.6 0.0054 1.8E-07 53.1 2.8 21 15-35 34-54 (262)
441 4dzz_A Plasmid partitioning pr 95.6 0.023 7.9E-07 46.7 6.6 48 85-136 76-123 (206)
442 1knq_A Gluconate kinase; ALFA/ 95.6 0.0083 2.8E-07 48.2 3.7 22 14-35 9-30 (175)
443 2eyu_A Twitching motility prot 95.6 0.0055 1.9E-07 53.0 2.8 23 14-36 26-48 (261)
444 3gfo_A Cobalt import ATP-bindi 95.6 0.0056 1.9E-07 53.4 2.8 21 15-35 36-56 (275)
445 1mv5_A LMRA, multidrug resista 95.6 0.0062 2.1E-07 52.1 3.0 22 15-36 30-51 (243)
446 1g6h_A High-affinity branched- 95.6 0.0058 2E-07 52.8 2.8 21 15-35 35-55 (257)
447 2ff7_A Alpha-hemolysin translo 95.6 0.0064 2.2E-07 52.1 3.1 22 15-36 37-58 (247)
448 1nks_A Adenylate kinase; therm 95.6 0.0071 2.4E-07 49.2 3.2 21 15-35 3-23 (194)
449 4g1u_C Hemin import ATP-bindin 95.6 0.0057 1.9E-07 53.1 2.7 22 15-36 39-60 (266)
450 3ec2_A DNA replication protein 95.6 0.0058 2E-07 49.4 2.6 22 14-35 39-60 (180)
451 2pze_A Cystic fibrosis transme 95.6 0.0066 2.3E-07 51.4 3.0 21 15-35 36-56 (229)
452 1kht_A Adenylate kinase; phosp 95.5 0.0068 2.3E-07 49.3 3.0 22 14-35 4-25 (192)
453 2f1r_A Molybdopterin-guanine d 95.5 0.0036 1.2E-07 50.4 1.3 21 15-35 4-24 (171)
454 3vaa_A Shikimate kinase, SK; s 95.5 0.007 2.4E-07 49.9 3.0 22 14-35 26-47 (199)
455 1ji0_A ABC transporter; ATP bi 95.5 0.0063 2.2E-07 51.9 2.8 21 15-35 34-54 (240)
456 2qi9_C Vitamin B12 import ATP- 95.5 0.0063 2.1E-07 52.2 2.8 21 15-35 28-48 (249)
457 2olj_A Amino acid ABC transpor 95.5 0.0062 2.1E-07 52.7 2.8 21 15-35 52-72 (263)
458 1cke_A CK, MSSA, protein (cyti 95.5 0.0069 2.3E-07 50.9 3.0 22 14-35 6-27 (227)
459 1e4v_A Adenylate kinase; trans 95.5 0.007 2.4E-07 50.5 3.0 22 14-35 1-22 (214)
460 2d2e_A SUFC protein; ABC-ATPas 95.5 0.0067 2.3E-07 52.1 2.9 21 15-35 31-51 (250)
461 2ghi_A Transport protein; mult 95.5 0.0073 2.5E-07 52.2 3.1 22 15-36 48-69 (260)
462 2wwf_A Thymidilate kinase, put 95.4 0.0099 3.4E-07 49.3 3.7 23 13-35 10-32 (212)
463 1vpl_A ABC transporter, ATP-bi 95.4 0.0069 2.4E-07 52.2 2.8 21 15-35 43-63 (256)
464 3uie_A Adenylyl-sulfate kinase 95.4 0.0075 2.5E-07 49.8 2.8 23 13-35 25-47 (200)
465 3lnc_A Guanylate kinase, GMP k 95.4 0.0054 1.8E-07 51.9 2.0 21 15-35 29-50 (231)
466 2ixe_A Antigen peptide transpo 95.4 0.0072 2.5E-07 52.6 2.8 22 15-36 47-68 (271)
467 3cm0_A Adenylate kinase; ATP-b 95.4 0.0094 3.2E-07 48.3 3.4 22 14-35 5-26 (186)
468 4a74_A DNA repair and recombin 95.4 0.0074 2.5E-07 50.7 2.8 22 15-36 27-48 (231)
469 2www_A Methylmalonic aciduria 95.4 0.0078 2.7E-07 54.4 3.1 25 12-36 73-97 (349)
470 2zu0_C Probable ATP-dependent 95.4 0.0076 2.6E-07 52.3 2.9 21 15-35 48-68 (267)
471 1qhx_A CPT, protein (chloramph 95.4 0.0076 2.6E-07 48.5 2.7 22 14-35 4-25 (178)
472 2nq2_C Hypothetical ABC transp 95.3 0.0076 2.6E-07 51.9 2.7 22 15-36 33-54 (253)
473 3aez_A Pantothenate kinase; tr 95.3 0.0075 2.6E-07 53.6 2.8 25 11-35 88-112 (312)
474 2ihy_A ABC transporter, ATP-bi 95.3 0.0084 2.9E-07 52.4 3.0 22 15-36 49-70 (279)
475 2rhm_A Putative kinase; P-loop 95.3 0.0094 3.2E-07 48.5 3.2 22 14-35 6-27 (193)
476 1ukz_A Uridylate kinase; trans 95.3 0.013 4.4E-07 48.3 4.0 24 12-35 14-37 (203)
477 1jjv_A Dephospho-COA kinase; P 95.3 0.0098 3.3E-07 49.2 3.3 22 14-35 3-24 (206)
478 3tlx_A Adenylate kinase 2; str 95.3 0.0096 3.3E-07 50.8 3.3 24 12-35 28-51 (243)
479 2yz2_A Putative ABC transporte 95.3 0.008 2.7E-07 52.1 2.8 21 15-35 35-55 (266)
480 1tev_A UMP-CMP kinase; ploop, 95.3 0.01 3.4E-07 48.4 3.3 23 13-35 3-25 (196)
481 2ehv_A Hypothetical protein PH 95.3 0.0082 2.8E-07 51.1 2.8 21 15-35 32-52 (251)
482 1y63_A LMAJ004144AAA protein; 95.3 0.01 3.5E-07 48.2 3.3 23 13-35 10-32 (184)
483 2qu8_A Putative nucleolar GTP- 95.3 0.0041 1.4E-07 52.5 0.8 154 11-231 27-196 (228)
484 2pt5_A Shikimate kinase, SK; a 95.3 0.0092 3.1E-07 47.5 2.9 22 14-35 1-22 (168)
485 2plr_A DTMP kinase, probable t 95.3 0.011 3.7E-07 48.9 3.4 22 14-35 5-26 (213)
486 4ido_A Atlastin-1; GTPase, GTP 95.2 0.048 1.6E-06 50.6 7.8 81 12-97 66-152 (457)
487 2kjq_A DNAA-related protein; s 95.2 0.0083 2.8E-07 47.1 2.4 22 14-35 37-58 (149)
488 3trf_A Shikimate kinase, SK; a 95.2 0.01 3.5E-07 48.1 3.0 22 14-35 6-27 (185)
489 1odf_A YGR205W, hypothetical 3 95.2 0.013 4.3E-07 51.5 3.7 25 11-35 29-53 (290)
490 2pjz_A Hypothetical protein ST 95.2 0.01 3.4E-07 51.4 3.0 23 15-37 32-54 (263)
491 1qf9_A UMP/CMP kinase, protein 95.2 0.015 5.2E-07 47.2 4.0 22 14-35 7-28 (194)
492 1lw7_A Transcriptional regulat 95.2 0.0084 2.9E-07 54.6 2.6 24 13-36 170-193 (365)
493 2v54_A DTMP kinase, thymidylat 95.1 0.013 4.6E-07 48.1 3.6 22 14-35 5-26 (204)
494 1zd8_A GTP:AMP phosphotransfer 95.1 0.01 3.6E-07 49.9 3.0 22 14-35 8-29 (227)
495 1xjc_A MOBB protein homolog; s 95.1 0.011 3.7E-07 47.4 2.8 21 15-35 6-26 (169)
496 3dpu_A RAB family protein; roc 95.1 0.015 5.1E-07 55.9 4.3 53 182-234 150-202 (535)
497 2wjg_A FEOB, ferrous iron tran 95.1 0.006 2E-07 49.4 1.3 150 9-231 3-160 (188)
498 1aky_A Adenylate kinase; ATP:A 95.1 0.012 3.9E-07 49.4 3.1 22 14-35 5-26 (220)
499 3iij_A Coilin-interacting nucl 95.1 0.011 3.9E-07 47.6 2.9 22 14-35 12-33 (180)
500 3nh6_A ATP-binding cassette SU 95.1 0.0078 2.7E-07 53.3 2.0 21 15-35 82-102 (306)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=7.2e-36 Score=255.62 Aligned_cols=179 Identities=93% Similarity=1.350 Sum_probs=136.9
Q ss_pred CCCCCCCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee
Q psy15725 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL 80 (355)
Q Consensus 1 ~~~~~~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 80 (355)
|+.+.++++|.+++||+|||++|||||||++||+.+.| ...+.||++.++..+....
T Consensus 1 ms~~~~~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f-----------------------~~~~~~Tig~d~~~k~~~~ 57 (216)
T 4dkx_A 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSF-----------------------DNTYQATIGIDFLSKTMYL 57 (216)
T ss_dssp ------------CEEEEEECSTTSSHHHHHHHHHHSCC-----------------------C----------CEEEEEEC
T ss_pred CCCCCCCCCCCCcEEEEEECcCCcCHHHHHHHHHhCCC-----------------------CCCcCCccceEEEEEEEEe
Confidence 89999999999999999999999999999999999544 4455677788888888889
Q ss_pred cCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccccccc
Q psy15725 81 EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFH 160 (355)
Q Consensus 81 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
++..+.+.+|||+|+++|..+++.+++.+|++++|||++++++|+++..|+..+...
T Consensus 58 ~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~----------------------- 114 (216)
T 4dkx_A 58 EDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE----------------------- 114 (216)
T ss_dssp SSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-----------------------
T ss_pred cceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHh-----------------------
Confidence 999999999999999999999999999999999999999999999888887665321
Q ss_pred ccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCc
Q psy15725 161 HANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQ 240 (355)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~ 240 (355)
T Consensus 115 -------------------------------------------------------------------------------- 114 (216)
T 4dkx_A 115 -------------------------------------------------------------------------------- 114 (216)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEE
Q psy15725 241 ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF 320 (355)
Q Consensus 241 ~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~ 320 (355)
...++|++||+||+|+.+.+.+..+++..+++..+++|
T Consensus 115 ------------------------------------------~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~ 152 (216)
T 4dkx_A 115 ------------------------------------------RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMF 152 (216)
T ss_dssp ------------------------------------------HTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEE
T ss_pred ------------------------------------------cCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCee
Confidence 11467888888888887778899999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHcCCCCC
Q psy15725 321 IETSAKAGYNVKQLFRRVAAALPGMDS 347 (355)
Q Consensus 321 ~~~SA~~~~gv~~l~~~l~~~i~~~~~ 347 (355)
++|||++|.||+++|+.|++.++....
T Consensus 153 ~e~SAktg~nV~e~F~~i~~~i~~~~~ 179 (216)
T 4dkx_A 153 IETSAKAGYNVKQLFRRVAAALPGMES 179 (216)
T ss_dssp EEEBTTTTBSHHHHHHHHHHHC-----
T ss_pred EEEeCCCCcCHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999976543
No 2
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.97 E-value=4.4e-31 Score=249.72 Aligned_cols=255 Identities=18% Similarity=0.148 Sum_probs=159.9
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
.+|+++|++|||||||+|+|++...... .++.+.+..............+.+||||
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v------------------------~~~~g~T~d~~~~~~~~~~~~~~l~DT~ 59 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIV------------------------EDTPGVTRDRIYSSAEWLNYDFNLIDTG 59 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------------------------------CEEEECTTCSSCCEEEC--
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee------------------------cCCCCCccceEEEEEEECCceEEEEECC
Confidence 5899999999999999999998543211 1222223233333344444579999999
Q ss_pred Ccc--------cccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcc
Q psy15725 94 GQE--------RFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165 (355)
Q Consensus 94 g~~--------~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (355)
|++ .+...+..+++.+|++++|+|+.+..++.. .|+..+.+
T Consensus 60 G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~----------------------------- 108 (436)
T 2hjg_A 60 GIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILY----------------------------- 108 (436)
T ss_dssp -------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHT-----------------------------
T ss_pred CCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHH-----------------------------
Confidence 985 566677788899999999999998766643 23322211
Q ss_pred ccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCe-EEEEeeeeecccc-----------------
Q psy15725 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNV----------------- 227 (355)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~-~~~~~sa~~~~~v----------------- 227 (355)
..++|+++|+||+|+...... ..++. ..+. .++.+|+.++.++
T Consensus 109 --------------~~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~ 169 (436)
T 2hjg_A 109 --------------RTKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPET 169 (436)
T ss_dssp --------------TCCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGGGCCSS
T ss_pred --------------HcCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcCccccc
Confidence 137899999999998542110 00000 0010 2222222222111
Q ss_pred ---------------------------------------------------ceEEEEEEeCCCc----------cccccc
Q psy15725 228 ---------------------------------------------------KQVRLQLWDTAGQ----------ERFRSL 246 (355)
Q Consensus 228 ---------------------------------------------------~~i~~~i~D~~g~----------~~~~~~ 246 (355)
+...+.+|||+|. +.|..+
T Consensus 170 ~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~ 249 (436)
T 2hjg_A 170 KYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVL 249 (436)
T ss_dssp CCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHH
T ss_pred cccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHH
Confidence 1224678899986 334433
Q ss_pred cc-ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHH-----HHHhhcCcEE
Q psy15725 247 IP-SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGE-----RKAKELNVMF 320 (355)
Q Consensus 247 ~~-~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-----~~~~~~~~~~ 320 (355)
+. .++..+|++++|+|++++.+.++. .|...+.. .++|+++|+||+|+.+.+.....+.. .+....++++
T Consensus 250 ~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~ 325 (436)
T 2hjg_A 250 RALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI 325 (436)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCE
Confidence 33 467889999999999999887775 56666655 58999999999999765544333222 2222345799
Q ss_pred EEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725 321 IETSAKAGYNVKQLFRRVAAALPGMD 346 (355)
Q Consensus 321 ~~~SA~~~~gv~~l~~~l~~~i~~~~ 346 (355)
+++||++|.||+++|+++.+.+....
T Consensus 326 ~~~SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 326 LFMSALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred EEEecccCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999998887543
No 3
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.96 E-value=1.5e-30 Score=247.54 Aligned_cols=261 Identities=18% Similarity=0.169 Sum_probs=166.0
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
+...+|+++|++|||||||+|+|++..+... .++.+.+..............+.+|
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v------------------------~~~~g~t~~~~~~~~~~~~~~~~li 76 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIV------------------------EDTPGVTRDRIYSSAEWLNYDFNLI 76 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------------------------------CEEEECTTCSSCCEEE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCccc------------------------CCCCCcceeEEEEEEEECCceEEEE
Confidence 3456999999999999999999998543211 1122333334444445555689999
Q ss_pred ecCC--------cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccccccccc
Q psy15725 91 DTAG--------QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHA 162 (355)
Q Consensus 91 D~~g--------~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (355)
|||| ++.+...+..+++.+|++++|+|..+..+. ...|+..+..
T Consensus 77 DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~--~d~~l~~~l~-------------------------- 128 (456)
T 4dcu_A 77 DTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTA--ADEEVAKILY-------------------------- 128 (456)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCH--HHHHHHHHHT--------------------------
T ss_pred ECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCCh--HHHHHHHHHH--------------------------
Confidence 9999 667777888889999999999998774333 2333333221
Q ss_pred CccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccc----------------
Q psy15725 163 NSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN---------------- 226 (355)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~---------------- 226 (355)
..++|+++|+||+|+........ ..+....+ ..+.+|+..+.+
T Consensus 129 -----------------~~~~pvilV~NK~D~~~~~~~~~---e~~~lg~~-~~~~iSA~~g~gv~~L~~~i~~~l~~~~ 187 (456)
T 4dcu_A 129 -----------------RTKKPVVLAVNKLDNTEMRANIY---DFYSLGFG-EPYPISGTHGLGLGDLLDAVAEHFKNIP 187 (456)
T ss_dssp -----------------TCCSCEEEEEECC---------C---CSGGGSSS-SEEECCTTTCTTHHHHHHHHHTTGGGSC
T ss_pred -----------------HcCCCEEEEEECccchhhhhhHH---HHHHcCCC-ceEEeecccccchHHHHHHHHhhccccc
Confidence 13789999999999753211000 00000000 011122211111
Q ss_pred ----------------------------------------------------cceEEEEEEeCCC----------ccccc
Q psy15725 227 ----------------------------------------------------VKQVRLQLWDTAG----------QERFR 244 (355)
Q Consensus 227 ----------------------------------------------------v~~i~~~i~D~~g----------~~~~~ 244 (355)
.+...+.+|||+| .+.|.
T Consensus 188 ~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~ 267 (456)
T 4dcu_A 188 ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYS 267 (456)
T ss_dssp SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHH
T ss_pred ccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHH
Confidence 1123567999999 56666
Q ss_pred cccc-ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhc-----Cc
Q psy15725 245 SLIP-SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL-----NV 318 (355)
Q Consensus 245 ~~~~-~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-----~~ 318 (355)
.++. .++..++++++|+|+++..+.++ ..|...+.+ .++|+++|+||+|+.+.+....++....++.. ++
T Consensus 268 ~~~~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (456)
T 4dcu_A 268 VLRALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYA 343 (456)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTS
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCC
Confidence 6555 36789999999999998765333 345555555 58999999999999866666555555554432 47
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHcCCCCCC
Q psy15725 319 MFIETSAKAGYNVKQLFRRVAAALPGMDST 348 (355)
Q Consensus 319 ~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~ 348 (355)
+++++||++|.||+++|++|.+.+...+..
T Consensus 344 ~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~ 373 (456)
T 4dcu_A 344 PILFMSALTKKRIHTLMPAIIKASENHSLR 373 (456)
T ss_dssp CEEECCTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred CEEEEcCCCCcCHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999988665443
No 4
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.96 E-value=6.6e-28 Score=200.76 Aligned_cols=175 Identities=33% Similarity=0.456 Sum_probs=140.1
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+.+||+++|++|||||||+++|+++.+. ..+.+|.+..+ ...+..++..+.+.+|
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~-----------------------~~~~~t~~~~~-~~~~~~~~~~~~~~l~ 59 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFV-----------------------DSYDPTIENTF-TKLITVNGQEYHLQLV 59 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCC-----------------------SCCCTTCCEEE-EEEEEETTEEEEEEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCC-----------------------CCCCCCccccE-EEEEEECCEEEEEEEE
Confidence 46799999999999999999999985543 33445556555 5666778888899999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
||||++.|...+..+++.+|++++|||++++.+|+.+..|+.++....
T Consensus 60 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------------------- 107 (181)
T 3t5g_A 60 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV-------------------------------- 107 (181)
T ss_dssp ECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC--------------------------------
T ss_pred eCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--------------------------------
Confidence 999999999999999999999999999999988888877766553210
Q ss_pred ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725 171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY 250 (355)
Q Consensus 171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~ 250 (355)
T Consensus 108 -------------------------------------------------------------------------------- 107 (181)
T 3t5g_A 108 -------------------------------------------------------------------------------- 107 (181)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCC
Q psy15725 251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 330 (355)
Q Consensus 251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~g 330 (355)
...++|+++|+||+|+...+.+..+++..+++..+++++++||++|.|
T Consensus 108 --------------------------------~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (181)
T 3t5g_A 108 --------------------------------GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQT 155 (181)
T ss_dssp ------------------------------------CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHH
T ss_pred --------------------------------CCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCC
Confidence 003578888888888877777888888889999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCC
Q psy15725 331 VKQLFRRVAAALPGMDSTENKPP 353 (355)
Q Consensus 331 v~~l~~~l~~~i~~~~~~~~~~~ 353 (355)
|+++|++|.+.+.+.+.....+|
T Consensus 156 v~~l~~~l~~~~~~~~~~~~~gk 178 (181)
T 3t5g_A 156 AVDVFRRIILEAEKMDGACSQGK 178 (181)
T ss_dssp HHHHHHHHHHHHHTC-----CCB
T ss_pred HHHHHHHHHHHHHHhcCCcccCc
Confidence 99999999999998877766654
No 5
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.1e-28 Score=208.16 Aligned_cols=182 Identities=35% Similarity=0.613 Sum_probs=130.2
Q ss_pred CCCCCCCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee
Q psy15725 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL 80 (355)
Q Consensus 1 ~~~~~~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 80 (355)
||+..........+||+|+|++|||||||+++|.+..+... +.++++.++....+.+
T Consensus 1 Ms~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-----------------------~~~t~~~~~~~~~~~~ 57 (223)
T 3cpj_B 1 MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMD-----------------------SKSTIGVEFATRTLEI 57 (223)
T ss_dssp ---------CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC-----------------------------CCSEEEEEEEE
T ss_pred CCccccCCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCC-----------------------CCCcccceeEEEEEEE
Confidence 77776555667789999999999999999999999554433 3455666777777778
Q ss_pred cCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccccccc
Q psy15725 81 EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFH 160 (355)
Q Consensus 81 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
++..+.+.+|||||++.|..++..+++.+|++|+|||++++.+|+.+..|+..+...
T Consensus 58 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~----------------------- 114 (223)
T 3cpj_B 58 EGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELREN----------------------- 114 (223)
T ss_dssp TTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHH-----------------------
T ss_pred CCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-----------------------
Confidence 888889999999999999999989999999999999998888888777776665321
Q ss_pred ccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCc
Q psy15725 161 HANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQ 240 (355)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~ 240 (355)
T Consensus 115 -------------------------------------------------------------------------------- 114 (223)
T 3cpj_B 115 -------------------------------------------------------------------------------- 114 (223)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEE
Q psy15725 241 ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF 320 (355)
Q Consensus 241 ~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~ 320 (355)
...++|+++|+||+|+...+.+..+++..+++..++++
T Consensus 115 ------------------------------------------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~ 152 (223)
T 3cpj_B 115 ------------------------------------------ADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLF 152 (223)
T ss_dssp ------------------------------------------CC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEE
T ss_pred ------------------------------------------CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEE
Confidence 11345666666666665545566666777777788999
Q ss_pred EEecCCCCCCHHHHHHHHHHHcCCCCCCCC
Q psy15725 321 IETSAKAGYNVKQLFRRVAAALPGMDSTEN 350 (355)
Q Consensus 321 ~~~SA~~~~gv~~l~~~l~~~i~~~~~~~~ 350 (355)
+++||++|.||+++|++|.+.+........
T Consensus 153 ~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~ 182 (223)
T 3cpj_B 153 TETSALNSENVDKAFEELINTIYQKVSKHQ 182 (223)
T ss_dssp EECCCC-CCCHHHHHHHHHHHHTTCC----
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999987655443
No 6
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.96 E-value=6.9e-28 Score=199.90 Aligned_cols=176 Identities=99% Similarity=1.390 Sum_probs=132.4
Q ss_pred CCCCCCCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee
Q psy15725 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL 80 (355)
Q Consensus 1 ~~~~~~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 80 (355)
|++. +..++.+.+||+++|++|||||||+++|++..+. ..+.++++.++....+.+
T Consensus 3 m~~~-~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-----------------------~~~~~~~~~~~~~~~~~~ 58 (179)
T 2y8e_A 3 MSSG-DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFD-----------------------NTYQATIGIDFLSKTMYL 58 (179)
T ss_dssp ----------CEEEEEEEEESTTSSHHHHHHHHHHSCCC-----------------------SSCCCCCSEEEEEEEEEE
T ss_pred cccc-cccCCCcceEEEEECCCCCCHHHHHHHHHcCCCC-----------------------CCCCCceeeEEEEEEEEE
Confidence 4443 5567788999999999999999999999985443 334556677777777888
Q ss_pred cCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccccccc
Q psy15725 81 EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFH 160 (355)
Q Consensus 81 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
++....+.+|||||++.+...+..+++.+|++++|||++++.+++.+..|+..+...
T Consensus 59 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----------------------- 115 (179)
T 2y8e_A 59 EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTE----------------------- 115 (179)
T ss_dssp TTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-----------------------
T ss_pred CCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-----------------------
Confidence 888889999999999998888888888888888888888887777776666554321
Q ss_pred ccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCc
Q psy15725 161 HANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQ 240 (355)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~ 240 (355)
T Consensus 116 -------------------------------------------------------------------------------- 115 (179)
T 2y8e_A 116 -------------------------------------------------------------------------------- 115 (179)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEE
Q psy15725 241 ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF 320 (355)
Q Consensus 241 ~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~ 320 (355)
...++|+++|+||+|+.+.+.+...+...+++..++++
T Consensus 116 ------------------------------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 153 (179)
T 2y8e_A 116 ------------------------------------------RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF 153 (179)
T ss_dssp ------------------------------------------HTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEE
T ss_pred ------------------------------------------cCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeE
Confidence 11356677777777765555666666667777778999
Q ss_pred EEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 321 IETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 321 ~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
+++||++|.|++++|++|.+.+++.
T Consensus 154 ~~~Sa~~~~~i~~l~~~l~~~~~~~ 178 (179)
T 2y8e_A 154 IETSAKAGYNVKQLFRRVAAALPGM 178 (179)
T ss_dssp EEEBTTTTBSHHHHHHHHHHTCC--
T ss_pred EEEeCCCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999988764
No 7
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.96 E-value=7.8e-28 Score=200.67 Aligned_cols=171 Identities=29% Similarity=0.483 Sum_probs=137.1
Q ss_pred CCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEE
Q psy15725 6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV 85 (355)
Q Consensus 6 ~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 85 (355)
......+.+||+++|++|||||||+++|+++.+.. .+.++++..+ ......++..+
T Consensus 11 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~-----------------------~~~~t~~~~~-~~~~~~~~~~~ 66 (183)
T 3kkq_A 11 VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVD-----------------------DYDPTIEDSY-LKHTEIDNQWA 66 (183)
T ss_dssp ---CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCS-----------------------CCCTTCCEEE-EEEEEETTEEE
T ss_pred CCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-----------------------CCCCCcccee-EEEEEeCCcEE
Confidence 33456778999999999999999999999854433 3445555555 55666778888
Q ss_pred EEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcc
Q psy15725 86 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165 (355)
Q Consensus 86 ~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (355)
.+.+|||||++.+..++..+++.+|++++|||++++.+|+.+..|+..+...
T Consensus 67 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~---------------------------- 118 (183)
T 3kkq_A 67 ILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRV---------------------------- 118 (183)
T ss_dssp EEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH----------------------------
T ss_pred EEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh----------------------------
Confidence 8999999999999999999999999999999999988888887776655321
Q ss_pred ccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccc
Q psy15725 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRS 245 (355)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~ 245 (355)
T Consensus 119 -------------------------------------------------------------------------------- 118 (183)
T 3kkq_A 119 -------------------------------------------------------------------------------- 118 (183)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecC
Q psy15725 246 LIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSA 325 (355)
Q Consensus 246 ~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA 325 (355)
....++|+++|+||+|+.+.+.+..+++..+++..+++++++||
T Consensus 119 ------------------------------------~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 162 (183)
T 3kkq_A 119 ------------------------------------KDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSA 162 (183)
T ss_dssp ------------------------------------HTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBC
T ss_pred ------------------------------------cCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEecc
Confidence 00146788888888888766778888888888888899999999
Q ss_pred C-CCCCHHHHHHHHHHHcCC
Q psy15725 326 K-AGYNVKQLFRRVAAALPG 344 (355)
Q Consensus 326 ~-~~~gv~~l~~~l~~~i~~ 344 (355)
+ +|.||+++|++|.+.+.+
T Consensus 163 ~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 163 KDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp SSSCBSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 9 999999999999998753
No 8
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.96 E-value=2.3e-27 Score=197.29 Aligned_cols=173 Identities=42% Similarity=0.752 Sum_probs=133.5
Q ss_pred CCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEE
Q psy15725 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRL 87 (355)
Q Consensus 8 ~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 87 (355)
+.+.+.+||+++|++|||||||+++|++..+.. .+.++++.++....+.+++....+
T Consensus 7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 63 (181)
T 2efe_B 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVE-----------------------FQESTIGAAFFSQTLAVNDATVKF 63 (181)
T ss_dssp ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTT-----------------------TSCCCSCCSEEEEEEEETTEEEEE
T ss_pred CCCccceEEEEECcCCCCHHHHHHHHHcCCCCC-----------------------cCCCCceeEEEEEEEEECCEEEEE
Confidence 345678999999999999999999999955433 334556666777777778888899
Q ss_pred EEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcccc
Q psy15725 88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ 167 (355)
Q Consensus 88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (355)
.+|||||++.+...+..+++.+|++++|||++++.+|+.+..|+..+..
T Consensus 64 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~------------------------------- 112 (181)
T 2efe_B 64 EIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQA------------------------------- 112 (181)
T ss_dssp EEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH-------------------------------
T ss_pred EEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH-------------------------------
Confidence 9999999999988888888888888888888888777777666655432
Q ss_pred CccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccc
Q psy15725 168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLI 247 (355)
Q Consensus 168 ~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~ 247 (355)
T Consensus 113 -------------------------------------------------------------------------------- 112 (181)
T 2efe_B 113 -------------------------------------------------------------------------------- 112 (181)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCC
Q psy15725 248 PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA 327 (355)
Q Consensus 248 ~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~ 327 (355)
....++|+++|+||+|+.+.+.+..++...+++..+++++++||++
T Consensus 113 ----------------------------------~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (181)
T 2efe_B 113 ----------------------------------QGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKT 158 (181)
T ss_dssp ----------------------------------HSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSS
T ss_pred ----------------------------------hcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCC
Confidence 1113567777777777766666667777778888889999999999
Q ss_pred CCCHHHHHHHHHHHcCCCCCC
Q psy15725 328 GYNVKQLFRRVAAALPGMDST 348 (355)
Q Consensus 328 ~~gv~~l~~~l~~~i~~~~~~ 348 (355)
|.||+++|++|.+.+.+...+
T Consensus 159 g~gi~~l~~~l~~~~~~~~~~ 179 (181)
T 2efe_B 159 ATNVKEIFYEIARRLPRVQPT 179 (181)
T ss_dssp CTTHHHHHHHHHHTCC-----
T ss_pred CCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999876544
No 9
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.96 E-value=1.9e-27 Score=197.26 Aligned_cols=170 Identities=36% Similarity=0.637 Sum_probs=133.5
Q ss_pred CCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEE
Q psy15725 7 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVR 86 (355)
Q Consensus 7 ~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 86 (355)
.....+.+||+++|++|||||||+++|.+..+ ...+.++.+.++....+..++....
T Consensus 9 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-----------------------~~~~~~t~~~~~~~~~~~~~~~~~~ 65 (179)
T 1z0f_A 9 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKF-----------------------MADCPHTIGVEFGTRIIEVSGQKIK 65 (179)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHHHSCC-----------------------CSSCTTSCCCCEEEEEEEETTEEEE
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHHcCCC-----------------------CCCCCCccceEEEEEEEEECCeEEE
Confidence 34456789999999999999999999999554 3334556666777777777888889
Q ss_pred EEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccc
Q psy15725 87 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166 (355)
Q Consensus 87 ~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (355)
+.+|||||++.+...+..+++.+|++++|||++++.+++.+..|+..+..
T Consensus 66 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~------------------------------ 115 (179)
T 1z0f_A 66 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN------------------------------ 115 (179)
T ss_dssp EEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHH------------------------------
T ss_pred EEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHH------------------------------
Confidence 99999999999888888888888999999988888777777766655432
Q ss_pred cCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccc
Q psy15725 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSL 246 (355)
Q Consensus 167 ~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~ 246 (355)
T Consensus 116 -------------------------------------------------------------------------------- 115 (179)
T 1z0f_A 116 -------------------------------------------------------------------------------- 115 (179)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCC
Q psy15725 247 IPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 326 (355)
Q Consensus 247 ~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~ 326 (355)
....++|+++|+||+|+.+.+.+..++...+++..+++++++||+
T Consensus 116 -----------------------------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (179)
T 1z0f_A 116 -----------------------------------LTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAK 160 (179)
T ss_dssp -----------------------------------HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred -----------------------------------hcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 111356777777777776555666667777777788999999999
Q ss_pred CCCCHHHHHHHHHHHcCC
Q psy15725 327 AGYNVKQLFRRVAAALPG 344 (355)
Q Consensus 327 ~~~gv~~l~~~l~~~i~~ 344 (355)
+|.||+++|++|.+.+.+
T Consensus 161 ~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 161 TGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp TCTTHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999998864
No 10
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.96 E-value=2e-27 Score=195.28 Aligned_cols=104 Identities=48% Similarity=0.899 Sum_probs=85.1
Q ss_pred CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ 88 (355)
Q Consensus 9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 88 (355)
.+.+.+||+++|++|||||||+++|+++.+.. .+.++++.++....+.+++....+.
T Consensus 2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (170)
T 1r2q_A 2 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHE-----------------------FQESTIGAAFLTQTVCLDDTTVKFE 58 (170)
T ss_dssp CEEEEEEEEEECSTTSSHHHHHHHHHHSCCCT-----------------------TCCCCSSEEEEEEEEEETTEEEEEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------CCCCccceEEEEEEEEECCEEEEEE
Confidence 35678999999999999999999999955433 3445566677777777788889999
Q ss_pred EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
+|||||++.+...+..+++.+|++++|||++++.+++.+..|+..+.
T Consensus 59 ~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 105 (170)
T 1r2q_A 59 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ 105 (170)
T ss_dssp EEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred EEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 99999999998888888888999999999888888877777766653
No 11
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.96 E-value=3.3e-28 Score=202.93 Aligned_cols=169 Identities=43% Similarity=0.738 Sum_probs=109.2
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+.+||+++|++|||||||+++|.++. +...+.+|++.++....+.+++....+.+||
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~-----------------------~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D 63 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDA-----------------------FNSTFISTIGIDFKIRTIELDGKRIKLQIWD 63 (183)
T ss_dssp EEEEEEEECCCCC---------------------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC-----------------------CCCCCCCcccceeEEEEEEECCEEEEEEEEc
Confidence 57999999999999999999999844 3344567777778777777888889999999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW 171 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (355)
|||++.+..++..+++.+|++++|||++++.+|+.+..|+..+..
T Consensus 64 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~----------------------------------- 108 (183)
T 2fu5_C 64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEE----------------------------------- 108 (183)
T ss_dssp C---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHH-----------------------------------
T ss_pred CCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHH-----------------------------------
Confidence 999998888888888888888888888887777777666655532
Q ss_pred cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725 172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI 251 (355)
Q Consensus 172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~ 251 (355)
T Consensus 109 -------------------------------------------------------------------------------- 108 (183)
T 2fu5_C 109 -------------------------------------------------------------------------------- 108 (183)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725 252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 331 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv 331 (355)
....++|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.||
T Consensus 109 ------------------------------~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i 158 (183)
T 2fu5_C 109 ------------------------------HASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINV 158 (183)
T ss_dssp ------------------------------HSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCH
T ss_pred ------------------------------hcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 11135677777777777655566667777777778899999999999999
Q ss_pred HHHHHHHHHHcCCCCCC
Q psy15725 332 KQLFRRVAAALPGMDST 348 (355)
Q Consensus 332 ~~l~~~l~~~i~~~~~~ 348 (355)
+++|++|.+.+.+...+
T Consensus 159 ~~l~~~l~~~i~~~~~~ 175 (183)
T 2fu5_C 159 ENAFFTLARDIKAKMDK 175 (183)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999998765443
No 12
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.95 E-value=2.1e-27 Score=197.00 Aligned_cols=173 Identities=35% Similarity=0.546 Sum_probs=139.3
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecC-cEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED-RTVRLQ 88 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~ 88 (355)
..+.+||+++|++|||||||+++|.++.+ ...+.+|++.++....+.+++ ....+.
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~-----------------------~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 59 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETF-----------------------GKQYKQTIGLDFFLRRITLPGNLNVTLQ 59 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGT-----------------------THHHHHTTTSSEEEEEEEETTTEEEEEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcC-----------------------CCCCCCceeEEEEEEEEEeCCCCEEEEE
Confidence 45689999999999999999999998443 334556777777777777776 578999
Q ss_pred EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725 89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168 (355)
Q Consensus 89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (355)
+|||||++.+...+..+++.+|++++|||++++.+|+.+..|+..+....
T Consensus 60 ~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~------------------------------ 109 (178)
T 2hxs_A 60 IWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVS------------------------------ 109 (178)
T ss_dssp EEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH------------------------------
T ss_pred EEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh------------------------------
Confidence 99999999999999999999999999999999999988888877664210
Q ss_pred ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP 248 (355)
Q Consensus 169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~ 248 (355)
T Consensus 110 -------------------------------------------------------------------------------- 109 (178)
T 2hxs_A 110 -------------------------------------------------------------------------------- 109 (178)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCC
Q psy15725 249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 328 (355)
Q Consensus 249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~ 328 (355)
.......|+++|+||+|+.+.+.+..++...+++..+++++++||++|
T Consensus 110 --------------------------------~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 157 (178)
T 2hxs_A 110 --------------------------------EESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTG 157 (178)
T ss_dssp --------------------------------HHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTC
T ss_pred --------------------------------cccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCC
Confidence 000012337788888887665667777777788888899999999999
Q ss_pred CCHHHHHHHHHHHcCCCCC
Q psy15725 329 YNVKQLFRRVAAALPGMDS 347 (355)
Q Consensus 329 ~gv~~l~~~l~~~i~~~~~ 347 (355)
.||+++|++|.+.+.+.+.
T Consensus 158 ~gi~~l~~~l~~~~~~~~~ 176 (178)
T 2hxs_A 158 DSVFLCFQKVAAEILGIKL 176 (178)
T ss_dssp TTHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHHhhhh
Confidence 9999999999999987654
No 13
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.95 E-value=2.4e-27 Score=199.30 Aligned_cols=171 Identities=38% Similarity=0.682 Sum_probs=133.7
Q ss_pred CCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEE
Q psy15725 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRL 87 (355)
Q Consensus 8 ~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 87 (355)
....+.+||+++|++|||||||+++|++..+... +.++++.++....+.+++..+.+
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------------~~~t~~~~~~~~~~~~~~~~~~~ 72 (191)
T 2a5j_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------HDLTIGVEFGARMVNIDGKQIKL 72 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC----------------------------CCSSEEEEEEEETTEEEEE
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCC-----------------------CCCcccceeEEEEEEECCEEEEE
Confidence 3456789999999999999999999999554333 34555666777777778888999
Q ss_pred EEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcccc
Q psy15725 88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ 167 (355)
Q Consensus 88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (355)
.+|||||++.+..++..+++.+|++++|||++++.+++.+..|+..+...
T Consensus 73 ~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~------------------------------ 122 (191)
T 2a5j_A 73 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH------------------------------ 122 (191)
T ss_dssp EEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH------------------------------
T ss_pred EEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh------------------------------
Confidence 99999999999998888899999999999998888887777776655321
Q ss_pred CccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccc
Q psy15725 168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLI 247 (355)
Q Consensus 168 ~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~ 247 (355)
T Consensus 123 -------------------------------------------------------------------------------- 122 (191)
T 2a5j_A 123 -------------------------------------------------------------------------------- 122 (191)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCC
Q psy15725 248 PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA 327 (355)
Q Consensus 248 ~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~ 327 (355)
...++|+++|+||+|+.+.+.+..++...+++..+++++++||++
T Consensus 123 -----------------------------------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 167 (191)
T 2a5j_A 123 -----------------------------------SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKT 167 (191)
T ss_dssp -----------------------------------SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTT
T ss_pred -----------------------------------cCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 113566777777777655556666677777777889999999999
Q ss_pred CCCHHHHHHHHHHHcCCCC
Q psy15725 328 GYNVKQLFRRVAAALPGMD 346 (355)
Q Consensus 328 ~~gv~~l~~~l~~~i~~~~ 346 (355)
|.||+++|++|.+.+.+..
T Consensus 168 ~~gi~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 168 ACNVEEAFINTAKEIYRKI 186 (191)
T ss_dssp CTTHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 9999999999999887543
No 14
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.2e-27 Score=202.83 Aligned_cols=103 Identities=43% Similarity=0.744 Sum_probs=86.9
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
....+||+++|++|||||||+++|+++.+. ..+.+|++.++....+.+++..+.+.+
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-----------------------~~~~~t~~~~~~~~~~~~~~~~~~l~l 79 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFP-----------------------PGQGATIGVDFMIKTVEINGEKVKLQI 79 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCC-----------------------TTCCCCCSEEEEEEEEEETTEEEEEEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCC-----------------------CCCCCccceeEEEEEEEECCEEEEEEE
Confidence 345799999999999999999999995543 334566677887788888888899999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
|||||++.|..++..+++.+|++++|||++++.+|+.+..|+..+.
T Consensus 80 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~ 125 (201)
T 2ew1_A 80 WDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIE 125 (201)
T ss_dssp EEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 9999999999888889999999999999999888888877776654
No 15
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.95 E-value=6.9e-27 Score=192.18 Aligned_cols=167 Identities=38% Similarity=0.740 Sum_probs=133.3
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
..+.+||+++|++|||||||+++|.+..+. ..+.++.+.++.......++....+.+
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFD-----------------------PNINPTIGASFMTKTVQYQNELHKFLI 59 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCC-----------------------TTCCCCCSEEEEEEEEEETTEEEEEEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCC-----------------------CCCCCceeEEEEEEEEEECCeEEEEEE
Confidence 457799999999999999999999995543 334556677777777778888889999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS 169 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (355)
|||||++.+...+..+++.+|++++|||++++.+++.+..|+..+..
T Consensus 60 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~--------------------------------- 106 (170)
T 1z0j_A 60 WDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQ--------------------------------- 106 (170)
T ss_dssp EEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH---------------------------------
T ss_pred EcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHH---------------------------------
Confidence 99999999888888888888888888888888777777767665532
Q ss_pred cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725 170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS 249 (355)
Q Consensus 170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~ 249 (355)
T Consensus 107 -------------------------------------------------------------------------------- 106 (170)
T 1z0j_A 107 -------------------------------------------------------------------------------- 106 (170)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCC
Q psy15725 250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 329 (355)
Q Consensus 250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~ 329 (355)
....+.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.
T Consensus 107 --------------------------------~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (170)
T 1z0j_A 107 --------------------------------HGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAI 154 (170)
T ss_dssp --------------------------------HSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTB
T ss_pred --------------------------------hCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCc
Confidence 111456677777777766555666677777777788999999999999
Q ss_pred CHHHHHHHHHHHcCC
Q psy15725 330 NVKQLFRRVAAALPG 344 (355)
Q Consensus 330 gv~~l~~~l~~~i~~ 344 (355)
|++++|++|.+.+++
T Consensus 155 ~i~~l~~~i~~~i~~ 169 (170)
T 1z0j_A 155 NINELFIEISRRIPS 169 (170)
T ss_dssp SHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999998864
No 16
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=3.8e-27 Score=193.66 Aligned_cols=102 Identities=42% Similarity=0.848 Sum_probs=86.0
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+.+||+++|++|||||||+++|+++.+. ..+.++.+.++....+.+++....+.+||
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 58 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFA-----------------------ENKEPTIGAAFLTQRVTINEHTVKFEIWD 58 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-----------------------TTCCCCSSEEEEEEEEEETTEEEEEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-----------------------CCCCCccceeEEEEEEEECCEEEEEEEEE
Confidence 5799999999999999999999995543 33455667777777777888888999999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT 136 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~ 136 (355)
|||++.+...+..+++.+|++++|||++++.+++.+..|+..+..
T Consensus 59 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 103 (170)
T 1ek0_A 59 TAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHE 103 (170)
T ss_dssp ECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred CCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHH
Confidence 999999999998899999999999999998888888888777643
No 17
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.95 E-value=2.6e-27 Score=194.89 Aligned_cols=167 Identities=39% Similarity=0.683 Sum_probs=126.2
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
..+.+||+++|++|||||||++++++..+.. .+.++++.++....+.+++..+.+.+
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------------------~~~~t~~~~~~~~~~~~~~~~~~l~i 59 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFND-----------------------KHITTLGASFLTKKLNIGGKRVNLAI 59 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCS-----------------------SCCCCCSCEEEEEEEESSSCEEEEEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCc-----------------------CCCCccceEEEEEEEEECCEEEEEEE
Confidence 3467999999999999999999999855433 34456666777777777888899999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS 169 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (355)
|||||++.+...+..+++.+|++++|||++++.+++.+..|+..+...
T Consensus 60 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-------------------------------- 107 (170)
T 1z08_A 60 WDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKM-------------------------------- 107 (170)
T ss_dssp EECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH--------------------------------
T ss_pred EECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh--------------------------------
Confidence 999999998888888888899999999988888887777776655321
Q ss_pred cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725 170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS 249 (355)
Q Consensus 170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~ 249 (355)
T Consensus 108 -------------------------------------------------------------------------------- 107 (170)
T 1z08_A 108 -------------------------------------------------------------------------------- 107 (170)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCC
Q psy15725 250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 329 (355)
Q Consensus 250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~ 329 (355)
...++|+++|+||+|+.+.+.+..++...+++..+++++++||++|.
T Consensus 108 ---------------------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (170)
T 1z08_A 108 ---------------------------------LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNK 154 (170)
T ss_dssp ---------------------------------HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTB
T ss_pred ---------------------------------cCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCC
Confidence 11246677777777765555666667777787888999999999999
Q ss_pred CHHHHHHHHHHHcCC
Q psy15725 330 NVKQLFRRVAAALPG 344 (355)
Q Consensus 330 gv~~l~~~l~~~i~~ 344 (355)
||+++|++|.+.+.+
T Consensus 155 gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 155 GIEELFLDLCKRMIE 169 (170)
T ss_dssp SHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998764
No 18
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.95 E-value=2e-27 Score=201.64 Aligned_cols=168 Identities=45% Similarity=0.713 Sum_probs=129.4
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+.+||+++|++|||||||+++|.++.+. ..+.+|++.++....+.+++..+.+.+|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~-----------------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~ 83 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFS-----------------------ERQGSTIGVDFTMKTLEIQGKRVKLQIW 83 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC---------------------------------CEEEEEEEETTEEEEEEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCC-----------------------CCCCCCcceEEEEEEEEECCEEEEEEEE
Confidence 45799999999999999999999985543 3345666777777777788888899999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
||||+++|..++..+++.+|++++|||++++.+|+.+..|+..+...
T Consensus 84 Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~--------------------------------- 130 (201)
T 2hup_A 84 DTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKY--------------------------------- 130 (201)
T ss_dssp CCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHH---------------------------------
T ss_pred ECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh---------------------------------
Confidence 99999999888888889999999999998888887777776665321
Q ss_pred ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725 171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY 250 (355)
Q Consensus 171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~ 250 (355)
T Consensus 131 -------------------------------------------------------------------------------- 130 (201)
T 2hup_A 131 -------------------------------------------------------------------------------- 130 (201)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCCC
Q psy15725 251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGY 329 (355)
Q Consensus 251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~~ 329 (355)
...++|+++|+||+|+.+.+.+..+++..+++..++ +++++||++|.
T Consensus 131 --------------------------------~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~ 178 (201)
T 2hup_A 131 --------------------------------AGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSS 178 (201)
T ss_dssp --------------------------------SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTB
T ss_pred --------------------------------cCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 113566777777777665556666677777777888 99999999999
Q ss_pred CHHHHHHHHHHHcCCCC
Q psy15725 330 NVKQLFRRVAAALPGMD 346 (355)
Q Consensus 330 gv~~l~~~l~~~i~~~~ 346 (355)
||+++|++|.+.+.+..
T Consensus 179 gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 179 NVEEAFLRVATELIMRH 195 (201)
T ss_dssp SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999987543
No 19
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.95 E-value=5.1e-27 Score=197.84 Aligned_cols=170 Identities=39% Similarity=0.681 Sum_probs=137.8
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+.+||+++|++|||||||+++|++..+ ...+.++.+.++....+.+++..+.+.+|
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 70 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTY-----------------------TESYISTIGVDFKIRTIELDGKTIKLQIW 70 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCC-----------------------CSCCCCCSSEEEEEEEEEETTEEEEEEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCC-----------------------CCCCCCcccceEEEEEEEECCEEEEEEEE
Confidence 4579999999999999999999998544 33445666777777888888888999999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
||||++.+...+..+++.+|++++|||++++.+|+.+..|+..+...
T Consensus 71 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--------------------------------- 117 (196)
T 3tkl_A 71 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY--------------------------------- 117 (196)
T ss_dssp EECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH---------------------------------
T ss_pred ECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHh---------------------------------
Confidence 99999999988888888999999999998888887777776655321
Q ss_pred ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725 171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY 250 (355)
Q Consensus 171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~ 250 (355)
T Consensus 118 -------------------------------------------------------------------------------- 117 (196)
T 3tkl_A 118 -------------------------------------------------------------------------------- 117 (196)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCC
Q psy15725 251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 330 (355)
Q Consensus 251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~g 330 (355)
...++|+++|+||+|+.+.+.+...+...+++..+++++++||++|.|
T Consensus 118 --------------------------------~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 165 (196)
T 3tkl_A 118 --------------------------------ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 165 (196)
T ss_dssp --------------------------------SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTT
T ss_pred --------------------------------cCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 113567777777777776667777777888888889999999999999
Q ss_pred HHHHHHHHHHHcCCCCCC
Q psy15725 331 VKQLFRRVAAALPGMDST 348 (355)
Q Consensus 331 v~~l~~~l~~~i~~~~~~ 348 (355)
|+++|++|.+.+.+....
T Consensus 166 v~~l~~~l~~~i~~~~~~ 183 (196)
T 3tkl_A 166 VEQSFMTMAAEIKKRMGP 183 (196)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999998866443
No 20
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.95 E-value=1.3e-27 Score=202.69 Aligned_cols=176 Identities=31% Similarity=0.465 Sum_probs=134.8
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
..+.+||+++|++|||||||+++|++..+... +.+|.+..+ ......++..+.+.+
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-----------------------~~~t~~~~~-~~~~~~~~~~~~~~l 76 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEG-----------------------YDPTVENTY-SKIVTLGKDEFHLHL 76 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSC-----------------------CCCCSEEEE-EEEEC----CEEEEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCC-----------------------CCCccceEE-EEEEEECCEEEEEEE
Confidence 35689999999999999999999999655444 344445444 555556677789999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS 169 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (355)
|||||++.+..++..+++.+|++++|||++++.+|+.+..|+..+....
T Consensus 77 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~------------------------------- 125 (201)
T 3oes_A 77 VDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGH------------------------------- 125 (201)
T ss_dssp EEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC---------------------------------
T ss_pred EECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-------------------------------
Confidence 9999999999999999999999999999999999998888877663210
Q ss_pred cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725 170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS 249 (355)
Q Consensus 170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~ 249 (355)
T Consensus 126 -------------------------------------------------------------------------------- 125 (201)
T 3oes_A 126 -------------------------------------------------------------------------------- 125 (201)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCC
Q psy15725 250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 329 (355)
Q Consensus 250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~ 329 (355)
...++|+++|+||+|+...+.+...++..+++..+++++++||++|.
T Consensus 126 ---------------------------------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (201)
T 3oes_A 126 ---------------------------------GKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQ 172 (201)
T ss_dssp ------------------------------------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHH
T ss_pred ---------------------------------CCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCC
Confidence 00357888888888887777788888888888889999999999999
Q ss_pred CHHHHHHHHHHHcCCCCCCCCCCC
Q psy15725 330 NVKQLFRRVAAALPGMDSTENKPP 353 (355)
Q Consensus 330 gv~~l~~~l~~~i~~~~~~~~~~~ 353 (355)
||+++|++|.+.+.+.+...++++
T Consensus 173 ~v~~l~~~l~~~i~~~~~~~~~~~ 196 (201)
T 3oes_A 173 LTQGIFTKVIQEIARVENSYGQER 196 (201)
T ss_dssp HHHHHHHHHHHHHHHC--------
T ss_pred CHHHHHHHHHHHHHhhhhhhcccc
Confidence 999999999999987766655543
No 21
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.95 E-value=2.4e-27 Score=200.14 Aligned_cols=172 Identities=27% Similarity=0.358 Sum_probs=130.4
Q ss_pred CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ 88 (355)
Q Consensus 9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 88 (355)
.....+||+++|++|||||||+++|.+..... ...++.+.++....+.+++..+.+.
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~l~ 75 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDS-----------------------AHEPENPEDTYERRIMVDKEEVTLV 75 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCG-----------------------GGTTTSCTTEEEEEEEETTEEEEEE
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCc-----------------------cCCCCcccceEEEEEEECCEEEEEE
Confidence 34567999999999999999999997633211 1223344455666677888889999
Q ss_pred EEecCCcccccc-cccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcccc
Q psy15725 89 LWDTAGQERFRS-LIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ 167 (355)
Q Consensus 89 i~D~~g~~~~~~-~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (355)
+|||+|++.+.. ++..+++.+|++++|||++++.+|+.+..|+.++....
T Consensus 76 i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~----------------------------- 126 (195)
T 3cbq_A 76 VYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGR----------------------------- 126 (195)
T ss_dssp EECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-----------------------------
T ss_pred EEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-----------------------------
Confidence 999999987765 66777788888888888888888877777766543210
Q ss_pred CccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccc
Q psy15725 168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLI 247 (355)
Q Consensus 168 ~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~ 247 (355)
T Consensus 127 -------------------------------------------------------------------------------- 126 (195)
T 3cbq_A 127 -------------------------------------------------------------------------------- 126 (195)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCC
Q psy15725 248 PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA 327 (355)
Q Consensus 248 ~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~ 327 (355)
...++|+++|+||+|+.+.+.+..+++..+++..+++++++||++
T Consensus 127 -----------------------------------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~ 171 (195)
T 3cbq_A 127 -----------------------------------PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAAL 171 (195)
T ss_dssp -----------------------------------TTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTT
T ss_pred -----------------------------------CCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCC
Confidence 003678888888888876666777777788888889999999999
Q ss_pred CCCHHHHHHHHHHHcCCCCC
Q psy15725 328 GYNVKQLFRRVAAALPGMDS 347 (355)
Q Consensus 328 ~~gv~~l~~~l~~~i~~~~~ 347 (355)
|.||+++|++|++.+...+.
T Consensus 172 ~~~v~~lf~~l~~~i~~~~~ 191 (195)
T 3cbq_A 172 HHNTRELFEGAVRQIRLRRG 191 (195)
T ss_dssp TBSHHHHHHHHHHHHHTTC-
T ss_pred CCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999976554
No 22
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=5.8e-27 Score=197.20 Aligned_cols=168 Identities=39% Similarity=0.745 Sum_probs=132.4
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+.+||+++|++|||||||+++|++..+ ...+.++++.++....+..++....+.+|
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 77 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHF-----------------------DHNISPTIGASFMTKTVPCGNELHKFLIW 77 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCC-----------------------CTTCCCCSSEEEEEEEEECSSSEEEEEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCC-----------------------CCCcCCCcceeEEEEEEEeCCEEEEEEEE
Confidence 4579999999999999999999999543 33445666777777777778888999999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
||||++++...+..+++.+|++++|||++++.+|+.+..|+..+...
T Consensus 78 Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~--------------------------------- 124 (192)
T 2fg5_A 78 DTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEH--------------------------------- 124 (192)
T ss_dssp EECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHH---------------------------------
T ss_pred cCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHh---------------------------------
Confidence 99999999988888889999999999998888888777776665421
Q ss_pred ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725 171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY 250 (355)
Q Consensus 171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~ 250 (355)
T Consensus 125 -------------------------------------------------------------------------------- 124 (192)
T 2fg5_A 125 -------------------------------------------------------------------------------- 124 (192)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCC
Q psy15725 251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 330 (355)
Q Consensus 251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~g 330 (355)
...++|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|
T Consensus 125 --------------------------------~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 172 (192)
T 2fg5_A 125 --------------------------------GPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAIN 172 (192)
T ss_dssp --------------------------------SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBS
T ss_pred --------------------------------CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcC
Confidence 113456666666666654455666667777777889999999999999
Q ss_pred HHHHHHHHHHHcCCCC
Q psy15725 331 VKQLFRRVAAALPGMD 346 (355)
Q Consensus 331 v~~l~~~l~~~i~~~~ 346 (355)
|+++|++|.+.+++..
T Consensus 173 i~~l~~~l~~~i~~~~ 188 (192)
T 2fg5_A 173 IEELFQGISRQIPPLD 188 (192)
T ss_dssp HHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999987543
No 23
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.95 E-value=7.7e-27 Score=195.85 Aligned_cols=166 Identities=42% Similarity=0.731 Sum_probs=132.3
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
...+||+++|++|||||||+++|++..+.. .+.++++.++....+..++....+.+|
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-----------------------~~~~t~~~~~~~~~~~~~~~~~~~~l~ 76 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTP-----------------------AFVSTVGIDFKVKTVYRHDKRIKLQIW 76 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCC-----------------------SCCCCCCCEEEEEEEEETTEEEEEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------CcCCceeEEEEEEEEEECCeEEEEEEE
Confidence 356999999999999999999999955433 344556667766777777888899999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
||||++.+...+..+++.+|++++|||++++.+|+.+..|+..+...
T Consensus 77 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~--------------------------------- 123 (189)
T 2gf9_A 77 DTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTY--------------------------------- 123 (189)
T ss_dssp ECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH---------------------------------
T ss_pred eCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh---------------------------------
Confidence 99999999999888899999999999998888887777776665321
Q ss_pred ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725 171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY 250 (355)
Q Consensus 171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~ 250 (355)
T Consensus 124 -------------------------------------------------------------------------------- 123 (189)
T 2gf9_A 124 -------------------------------------------------------------------------------- 123 (189)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCC
Q psy15725 251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 330 (355)
Q Consensus 251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~g 330 (355)
...++|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|
T Consensus 124 --------------------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 171 (189)
T 2gf9_A 124 --------------------------------SWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENIN 171 (189)
T ss_dssp --------------------------------SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred --------------------------------cCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 113466777777777655555666667777777788999999999999
Q ss_pred HHHHHHHHHHHcCC
Q psy15725 331 VKQLFRRVAAALPG 344 (355)
Q Consensus 331 v~~l~~~l~~~i~~ 344 (355)
|+++|++|.+.+.+
T Consensus 172 i~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 172 VKQVFERLVDVICE 185 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998864
No 24
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.95 E-value=2.5e-27 Score=202.97 Aligned_cols=184 Identities=24% Similarity=0.439 Sum_probs=138.1
Q ss_pred CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ 88 (355)
Q Consensus 9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 88 (355)
...+.+||+++|++|||||||+++|+++.+... +.+|++.++ ...+.+++..+.+.
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~-----------------------~~~t~~~~~-~~~~~~~~~~~~l~ 78 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPET-----------------------YVPTVFENY-TACLETEEQRVELS 78 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSS-----------------------CCCCSEEEE-EEEEEC--CEEEEE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCC-----------------------cCCeeeeeE-EEEEEECCEEEEEE
Confidence 345689999999999999999999999655444 445555554 44556777888999
Q ss_pred EEecCCcccccccccccccCccEEEEEEECCCcchhhh-HHHHHHHHhhhcCCceEEeeccccccccccccccccCcccc
Q psy15725 89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ 167 (355)
Q Consensus 89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (355)
+|||+|++.|..++..+++.+|++|+|||++++.+|+. +..|+..+...
T Consensus 79 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~------------------------------ 128 (214)
T 3q3j_B 79 LWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDY------------------------------ 128 (214)
T ss_dssp EEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHH------------------------------
T ss_pred EEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHh------------------------------
Confidence 99999999999999999999999999999999999998 68999988753
Q ss_pred CccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccc
Q psy15725 168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLI 247 (355)
Q Consensus 168 ~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~ 247 (355)
..++|+++|+||+|+.++..
T Consensus 129 ------------~~~~piilv~nK~Dl~~~~~------------------------------------------------ 148 (214)
T 3q3j_B 129 ------------CPSTRVLLIGCKTDLRTDLS------------------------------------------------ 148 (214)
T ss_dssp ------------CTTSEEEEEEECGGGGGCHH------------------------------------------------
T ss_pred ------------CCCCCEEEEEEChhhccchh------------------------------------------------
Confidence 13789999999999743100
Q ss_pred cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCC
Q psy15725 248 PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAK 326 (355)
Q Consensus 248 ~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~ 326 (355)
. ...+... ..+.+..+++..+++..++ ++++|||+
T Consensus 149 -----------------------~----~~~~~~~-----------------~~~~v~~~~~~~~~~~~~~~~~~e~SA~ 184 (214)
T 3q3j_B 149 -----------------------T----LMELSHQ-----------------KQAPISYEQGCAIAKQLGAEIYLEGSAF 184 (214)
T ss_dssp -----------------------H----HHHHHHT-----------------TCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred -----------------------h----hhhhccc-----------------ccCccCHHHHHHHHHHcCCCEEEEeccC
Confidence 0 0011110 1245667788888888898 99999999
Q ss_pred CCCC-HHHHHHHHHHHcCCCCCCCC
Q psy15725 327 AGYN-VKQLFRRVAAALPGMDSTEN 350 (355)
Q Consensus 327 ~~~g-v~~l~~~l~~~i~~~~~~~~ 350 (355)
+|.| |+++|++|.+.+........
T Consensus 185 ~g~g~v~~lf~~l~~~~~~~~~~~~ 209 (214)
T 3q3j_B 185 TSEKSIHSIFRTASMLCLNKPSPLP 209 (214)
T ss_dssp TCHHHHHHHHHHHHHHHHC------
T ss_pred CCcccHHHHHHHHHHHHhccCcCCC
Confidence 9998 99999999999987655443
No 25
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.95 E-value=6.1e-28 Score=228.41 Aligned_cols=252 Identities=21% Similarity=0.208 Sum_probs=153.3
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 94 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 94 (355)
+|+++|++|||||||+|||++...... ...|++..+.....+.+++ ..+.+|||||
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v----------------------~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G 58 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIV----------------------EDEEGVTRDPVQDTVEWYG--KTFKLVDTCG 58 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC------------------------------------CCSEEEEEETT--EEEEEEECTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcee----------------------cCCCCCccceeeEEEEECC--eEEEEEECCC
Confidence 799999999999999999998542110 1122333333444444444 4689999999
Q ss_pred cccc---------cccccccccCccEEEEEEECCCcchhhh--HHHHHHHHhhhcCCceEEeeccccccccccccccccC
Q psy15725 95 QERF---------RSLIPSYIRDSTVAVVVYDITNANSFHQ--TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHAN 163 (355)
Q Consensus 95 ~~~~---------~~~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (355)
++.. ...+..+++++|++++|+|+++..+... +..|+..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~------------------------------ 108 (439)
T 1mky_A 59 VFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRK------------------------------ 108 (439)
T ss_dssp TTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHH------------------------------
T ss_pred ccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH------------------------------
Confidence 7642 3345667899999999999988655533 3334332
Q ss_pred ccccCccccccccccCCCccEEEEEeecCCCCcccceehhhh-hhhhhccCe-EEEEeeeeecccc--------------
Q psy15725 164 SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEG-ERKAKELNV-MFIETSAKAGYNV-------------- 227 (355)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~-~~~~~~~~~-~~~~~sa~~~~~v-------------- 227 (355)
.++|+++|+||+|+.... ..+. .++. ..+. .++.+|+.++.++
T Consensus 109 -----------------~~~p~ilv~NK~D~~~~~---~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 109 -----------------STVDTILVANKAENLREF---EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp -----------------HTCCEEEEEESCCSHHHH---HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred -----------------cCCCEEEEEeCCCCcccc---HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhcccc
Confidence 178999999999974320 0111 1111 1122 2333443332211
Q ss_pred ----------------------------------------------------------ceEEEEEEeCCCcccccccc--
Q psy15725 228 ----------------------------------------------------------KQVRLQLWDTAGQERFRSLI-- 247 (355)
Q Consensus 228 ----------------------------------------------------------~~i~~~i~D~~g~~~~~~~~-- 247 (355)
+...+.+|||+|........
T Consensus 168 ~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~ 247 (439)
T 1mky_A 168 GLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPR 247 (439)
T ss_dssp TCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC---------
T ss_pred cccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchh
Confidence 11134567888864332211
Q ss_pred ----------cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHH-----HHH
Q psy15725 248 ----------PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEG-----ERK 312 (355)
Q Consensus 248 ----------~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-----~~~ 312 (355)
..++..++++++++|.++..+.++. .+...+.. .++|+++|+||+|+.+.+.....+. ..+
T Consensus 248 ~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~ 323 (439)
T 1mky_A 248 TVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKL 323 (439)
T ss_dssp --CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHh
Confidence 1345678999999999987776542 22333333 5899999999999875544333222 222
Q ss_pred HhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 313 AKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 313 ~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
....+++++++||++|.||+++|+.+.+.+...
T Consensus 324 ~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 324 YFIDYSPLIFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp GGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 233457999999999999999999999877654
No 26
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.2e-26 Score=192.82 Aligned_cols=171 Identities=41% Similarity=0.688 Sum_probs=125.5
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
..+.+||+++|++|||||||+++|++..+.. ..+.++++.++....+..++..+.+.+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~----------------------~~~~~t~~~~~~~~~~~~~~~~~~~~~ 64 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLA----------------------GTFISTVGIDFRNKVLDVDGVKVKLQM 64 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCC----------------------CCCCCCCSCEEEEEEEEETTEEEEEEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCC----------------------CCcCCceeeEEEEEEEEECCEEEEEEE
Confidence 4567999999999999999999999855421 234566677777777777888889999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS 169 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (355)
|||||++.+...+..+++.+|++++|||++++.+++.+..|+..+..
T Consensus 65 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~--------------------------------- 111 (180)
T 2g6b_A 65 WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHE--------------------------------- 111 (180)
T ss_dssp EECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHH---------------------------------
T ss_pred EeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHH---------------------------------
Confidence 99999998888888888888888888888887777776666655432
Q ss_pred cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725 170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS 249 (355)
Q Consensus 170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~ 249 (355)
T Consensus 112 -------------------------------------------------------------------------------- 111 (180)
T 2g6b_A 112 -------------------------------------------------------------------------------- 111 (180)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCC
Q psy15725 250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 329 (355)
Q Consensus 250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~ 329 (355)
....++|+++|+||+|+.+.+.+..++...+++..+++++++||++|.
T Consensus 112 --------------------------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (180)
T 2g6b_A 112 --------------------------------YAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGL 159 (180)
T ss_dssp --------------------------------HSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCT
T ss_pred --------------------------------hCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 111356677777777766555666667777777778899999999999
Q ss_pred CHHHHHHHHHHHcCCCCC
Q psy15725 330 NVKQLFRRVAAALPGMDS 347 (355)
Q Consensus 330 gv~~l~~~l~~~i~~~~~ 347 (355)
||+++|++|.+.+.+.+.
T Consensus 160 gi~~l~~~l~~~~~~~~~ 177 (180)
T 2g6b_A 160 NVDLAFTAIAKELKRRSM 177 (180)
T ss_dssp THHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 999999999999876543
No 27
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.95 E-value=4e-27 Score=195.62 Aligned_cols=172 Identities=30% Similarity=0.482 Sum_probs=134.7
Q ss_pred CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ 88 (355)
Q Consensus 9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 88 (355)
.+.+.+||+++|++|||||||+++|++..+.. .+.+|++..+. ..+..++....+.
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------------------~~~~t~~~~~~-~~~~~~~~~~~~~ 60 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVS-----------------------DYDPTIEDSYT-KICSVDGIPARLD 60 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCS-----------------------SCCTTCCEEEE-EEEEETTEEEEEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCcc-----------------------ccCCCcCceEE-EEEEECCEEEEEE
Confidence 34567999999999999999999999954433 34455555544 5566777778999
Q ss_pred EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725 89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168 (355)
Q Consensus 89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (355)
+|||||++++..++..+++.+|++++|||++++.+++.+..|+..+...
T Consensus 61 ~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~------------------------------- 109 (181)
T 2fn4_A 61 ILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRV------------------------------- 109 (181)
T ss_dssp EEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHH-------------------------------
T ss_pred EEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-------------------------------
Confidence 9999999999999988899999999999999988888777776665321
Q ss_pred ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP 248 (355)
Q Consensus 169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~ 248 (355)
T Consensus 110 -------------------------------------------------------------------------------- 109 (181)
T 2fn4_A 110 -------------------------------------------------------------------------------- 109 (181)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCC
Q psy15725 249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 328 (355)
Q Consensus 249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~ 328 (355)
....++|+++|+||+|+.+.+.+...++..++...+++++++||++|
T Consensus 110 ---------------------------------~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 156 (181)
T 2fn4_A 110 ---------------------------------KDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLR 156 (181)
T ss_dssp ---------------------------------HTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTT
T ss_pred ---------------------------------cCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCC
Confidence 00135677777777777655566667777777778899999999999
Q ss_pred CCHHHHHHHHHHHcCCCCCC
Q psy15725 329 YNVKQLFRRVAAALPGMDST 348 (355)
Q Consensus 329 ~gv~~l~~~l~~~i~~~~~~ 348 (355)
.||+++|++|.+.+.+.+++
T Consensus 157 ~gv~~l~~~l~~~~~~~~~~ 176 (181)
T 2fn4_A 157 LNVDEAFEQLVRAVRKYQEQ 176 (181)
T ss_dssp BSHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHhhcc
Confidence 99999999999999765543
No 28
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.95 E-value=2.9e-27 Score=196.48 Aligned_cols=169 Identities=37% Similarity=0.676 Sum_probs=135.2
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
..+.+||+++|++|||||||+++|.+..+ ...+.++.+.++....+.+++....+.+
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i 62 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTF-----------------------SGSYITTIGVDFKIRTVEINGEKVKLQI 62 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC--------------------------CCTTTBSEEEEEEEEEETTEEEEEEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCC-----------------------CCccCCCceeEEEEEEEEECCEEEEEEE
Confidence 34679999999999999999999998443 3344566677777788888888899999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS 169 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (355)
|||||++.+...+..+++.+|++++|||++++.+++.+..|+..+...
T Consensus 63 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-------------------------------- 110 (181)
T 3tw8_B 63 WDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN-------------------------------- 110 (181)
T ss_dssp EEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH--------------------------------
T ss_pred EcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh--------------------------------
Confidence 999999999999999999999999999999988888777776655321
Q ss_pred cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725 170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS 249 (355)
Q Consensus 170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~ 249 (355)
T Consensus 111 -------------------------------------------------------------------------------- 110 (181)
T 3tw8_B 111 -------------------------------------------------------------------------------- 110 (181)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCC
Q psy15725 250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 329 (355)
Q Consensus 250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~ 329 (355)
. .++|+++|+||+|+.+.+.+...+...++...+++++++||++|.
T Consensus 111 ---------------------------------~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (181)
T 3tw8_B 111 ---------------------------------C-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENV 156 (181)
T ss_dssp ---------------------------------C-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTB
T ss_pred ---------------------------------C-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCC
Confidence 1 245666666777765555666677777777788999999999999
Q ss_pred CHHHHHHHHHHHcCCCCC
Q psy15725 330 NVKQLFRRVAAALPGMDS 347 (355)
Q Consensus 330 gv~~l~~~l~~~i~~~~~ 347 (355)
||+++|++|.+.+...++
T Consensus 157 gi~~l~~~l~~~~~~~~~ 174 (181)
T 3tw8_B 157 NVEEMFNCITELVLRAKK 174 (181)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 999999999999876543
No 29
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.95 E-value=4.5e-27 Score=196.48 Aligned_cols=102 Identities=39% Similarity=0.743 Sum_probs=83.8
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+.+||+++|++|||||||+++|++..+.. .+.++++.++....+..++..+.+.+|
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~ 64 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKD-----------------------DSNHTIGVEFGSKIINVGGKYVKLQIW 64 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCT-----------------------TCCCCSEEEEEEEEEEETTEEEEEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------CCCCccceEEEEEEEEECCEEEEEEEE
Confidence 457999999999999999999999955433 344556667777777788888899999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
||||++.+...+..+++.+|++++|||++++.+|+.+..|+..+.
T Consensus 65 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 109 (186)
T 2bme_A 65 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDAR 109 (186)
T ss_dssp EECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred eCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 999999988888888888999999999888888877777766553
No 30
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.95 E-value=9.2e-27 Score=196.20 Aligned_cols=103 Identities=32% Similarity=0.587 Sum_probs=83.1
Q ss_pred CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ 88 (355)
Q Consensus 9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 88 (355)
...+.+||+++|++|||||||+++|.++.+... +.+|++..+. .....++..+.+.
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~-----------------------~~~t~~~~~~-~~~~~~~~~~~~~ 74 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTA-----------------------YVPTVFENFS-HVMKYKNEEFILH 74 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSS-----------------------CCCCSEEEEE-EEEEETTEEEEEE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCc-----------------------cCCeeeeeeE-EEEEECCEEEEEE
Confidence 345679999999999999999999999655444 3445454443 3556778888999
Q ss_pred EEecCCcccccccccccccCccEEEEEEECCCcchhhhH-HHHHHHHh
Q psy15725 89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVR 135 (355)
Q Consensus 89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~ 135 (355)
+|||||++.|...+..+++.+|++++|||++++.+|+.+ ..|+..+.
T Consensus 75 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 122 (194)
T 3reg_A 75 LWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIK 122 (194)
T ss_dssp EEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred EEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999886 66766654
No 31
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=3.4e-27 Score=201.19 Aligned_cols=171 Identities=30% Similarity=0.407 Sum_probs=127.4
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
..+.+||+++|++|||||||+++|.+... .+... .++++.++....+.+++..+.+.+
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~---------------------~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~ 91 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHD---------------------SMDSD-CEVLGEDTYERTLMVDGESATIIL 91 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCC---------------------TTCCC----CCTTEEEEEEEETTEEEEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCC---------------------CCCCc-CCccceeeEEEEEEECCeeeEEEE
Confidence 34579999999999999999999986331 11221 233555666677778888889999
Q ss_pred EecCCccc-ccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725 90 WDTAGQER-FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168 (355)
Q Consensus 90 ~D~~g~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (355)
|||+|+.. +..+...+++.+|++++|||++++.+|+.+..|...+....
T Consensus 92 ~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~------------------------------ 141 (211)
T 2g3y_A 92 LDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR------------------------------ 141 (211)
T ss_dssp ECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSG------------------------------
T ss_pred eecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh------------------------------
Confidence 99999876 45566667778888888888888888887777765543110
Q ss_pred ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP 248 (355)
Q Consensus 169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~ 248 (355)
T Consensus 142 -------------------------------------------------------------------------------- 141 (211)
T 2g3y_A 142 -------------------------------------------------------------------------------- 141 (211)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCC
Q psy15725 249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 328 (355)
Q Consensus 249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~ 328 (355)
...++|+++|+||+|+...+.+..+++..++...++++++|||++|
T Consensus 142 ----------------------------------~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g 187 (211)
T 2g3y_A 142 ----------------------------------QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQ 187 (211)
T ss_dssp ----------------------------------GGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred ----------------------------------CCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCC
Confidence 0035778888888887655667777777777778899999999999
Q ss_pred CCHHHHHHHHHHHcCCCC
Q psy15725 329 YNVKQLFRRVAAALPGMD 346 (355)
Q Consensus 329 ~gv~~l~~~l~~~i~~~~ 346 (355)
.||+++|++|++.+...+
T Consensus 188 ~~v~elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 188 HNVKELFEGIVRQVRLRR 205 (211)
T ss_dssp BSHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999999986443
No 32
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.95 E-value=5.2e-27 Score=196.18 Aligned_cols=98 Identities=17% Similarity=0.316 Sum_probs=78.3
Q ss_pred CCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEE
Q psy15725 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRL 87 (355)
Q Consensus 8 ~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 87 (355)
..+.+.+||+++|++|||||||+++|+++.+... +.+|.+ .+ ...+.+++..+.+
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~-----------------------~~~t~~-~~-~~~~~~~~~~~~l 69 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQE-----------------------ESPEGG-RF-KKEIVVDGQSYLL 69 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCC-----------------------CCTTCE-EE-EEEEEETTEEEEE
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCC-----------------------cCCCcc-eE-EEEEEECCEEEEE
Confidence 3467889999999999999999999999655443 333422 23 3667778888999
Q ss_pred EEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
.+|||+|++.+. +++.+|++++|||++++.+|+.+..|+..+.
T Consensus 70 ~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~ 112 (184)
T 3ihw_A 70 LIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLC 112 (184)
T ss_dssp EEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred EEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 999999998876 6778999999999999988888888887764
No 33
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.7e-26 Score=194.36 Aligned_cols=170 Identities=39% Similarity=0.688 Sum_probs=138.0
Q ss_pred CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ 88 (355)
Q Consensus 9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 88 (355)
...+.+||+++|++|||||||+++|++..+. ..+.++++.++....+.+++....+.
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-----------------------~~~~~t~~~~~~~~~~~~~~~~~~~~ 67 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFD-----------------------PELAATIGVDFKVKTISVDGNKAKLA 67 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCC-----------------------TTCCCCCSEEEEEEEEEETTEEEEEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCC-----------------------ccCCCccceEEEEEEEEECCeEEEEE
Confidence 3467899999999999999999999995543 33455667777777777888889999
Q ss_pred EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725 89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168 (355)
Q Consensus 89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (355)
+|||||++.+..++..+++.+|++++|||++++.+++.+..|+.++....
T Consensus 68 i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~------------------------------ 117 (195)
T 1x3s_A 68 IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYC------------------------------ 117 (195)
T ss_dssp EEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCC------------------------------
T ss_pred EEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc------------------------------
Confidence 99999999999999999999999999999999989988888877763210
Q ss_pred ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP 248 (355)
Q Consensus 169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~ 248 (355)
.
T Consensus 118 ----------~--------------------------------------------------------------------- 118 (195)
T 1x3s_A 118 ----------T--------------------------------------------------------------------- 118 (195)
T ss_dssp ----------S---------------------------------------------------------------------
T ss_pred ----------C---------------------------------------------------------------------
Confidence 0
Q ss_pred ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCC
Q psy15725 249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 328 (355)
Q Consensus 249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~ 328 (355)
..++|+++|+||+|+. .+.+..+++..+++..+++++++||++|
T Consensus 119 -----------------------------------~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (195)
T 1x3s_A 119 -----------------------------------RNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTC 162 (195)
T ss_dssp -----------------------------------CSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred -----------------------------------cCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCC
Confidence 0356777777777773 3445566677777778899999999999
Q ss_pred CCHHHHHHHHHHHcCCCC
Q psy15725 329 YNVKQLFRRVAAALPGMD 346 (355)
Q Consensus 329 ~gv~~l~~~l~~~i~~~~ 346 (355)
.||+++|++|.+.+....
T Consensus 163 ~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 163 DGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp TTHHHHHHHHHHHHHTSG
T ss_pred CCHHHHHHHHHHHHHhhh
Confidence 999999999999988654
No 34
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.95 E-value=1.1e-26 Score=190.34 Aligned_cols=164 Identities=32% Similarity=0.559 Sum_probs=128.1
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+.+||+++|++|||||||+++|.++.+...+ .+|.+..+ ...+.+++....+.+||
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~-----------------------~~t~~~~~-~~~~~~~~~~~~~~l~D 57 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKY-----------------------DPTIEDSY-RKQVEVDCQQCMLEILD 57 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSC-----------------------CCCSEEEE-EEEEESSSCEEEEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCC-----------------------CCCccceE-EEEEEECCEEEEEEEEE
Confidence 5689999999999999999999996554443 34444333 34455677788999999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW 171 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (355)
|||++.+...+..+++.+|++++|||++++.+|+.+..|+..+....
T Consensus 58 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--------------------------------- 104 (167)
T 1c1y_A 58 TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK--------------------------------- 104 (167)
T ss_dssp ECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH---------------------------------
T ss_pred CCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhh---------------------------------
Confidence 99999999999888999999999999999888887777766553210
Q ss_pred cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725 172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI 251 (355)
Q Consensus 172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~ 251 (355)
T Consensus 105 -------------------------------------------------------------------------------- 104 (167)
T 1c1y_A 105 -------------------------------------------------------------------------------- 104 (167)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhc-CcEEEEecCCCCCC
Q psy15725 252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL-NVMFIETSAKAGYN 330 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~SA~~~~g 330 (355)
...++|+++|+||+|+.+.+.+..++...+++.. +++++++||++|.|
T Consensus 105 -------------------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (167)
T 1c1y_A 105 -------------------------------DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKIN 153 (167)
T ss_dssp -------------------------------CCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBS
T ss_pred -------------------------------CcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCC
Confidence 0135677777777777655666666777777766 68999999999999
Q ss_pred HHHHHHHHHHHcC
Q psy15725 331 VKQLFRRVAAALP 343 (355)
Q Consensus 331 v~~l~~~l~~~i~ 343 (355)
++++|++|.+.+.
T Consensus 154 i~~l~~~l~~~i~ 166 (167)
T 1c1y_A 154 VNEIFYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998874
No 35
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.95 E-value=4.8e-27 Score=197.45 Aligned_cols=175 Identities=33% Similarity=0.563 Sum_probs=132.6
Q ss_pred CCCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeee-eeeeeecCc
Q psy15725 5 GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL-SKTMYLEDR 83 (355)
Q Consensus 5 ~~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~ 83 (355)
|+.....+.+||+++|++|||||||+++|.++.+... +.+|++.++. ...+..++.
T Consensus 3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------------~~~t~~~~~~~~~~~~~~~~ 59 (195)
T 3bc1_A 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSK-----------------------FITTVGIDFREKRVVYRANG 59 (195)
T ss_dssp ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCS-----------------------CCCCCSEEEEEEEEEECTTS
T ss_pred CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcC-----------------------cccccceeeeeEEEEEecCC
Confidence 3444556789999999999999999999999654433 3445555555 444445544
Q ss_pred ---------EEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccc
Q psy15725 84 ---------TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNF 154 (355)
Q Consensus 84 ---------~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (355)
...+.+|||||++.+...+..+++.+|++++|||++++.+++.+..|+..+.....
T Consensus 60 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--------------- 124 (195)
T 3bc1_A 60 PDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY--------------- 124 (195)
T ss_dssp CCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS---------------
T ss_pred cccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC---------------
Confidence 68999999999999998888889999999999999998888887777766643200
Q ss_pred ccccccccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEE
Q psy15725 155 THLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234 (355)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i 234 (355)
.
T Consensus 125 -------------------------~------------------------------------------------------ 125 (195)
T 3bc1_A 125 -------------------------S------------------------------------------------------ 125 (195)
T ss_dssp -------------------------S------------------------------------------------------
T ss_pred -------------------------C------------------------------------------------------
Confidence 0
Q ss_pred EeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHh
Q psy15725 235 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK 314 (355)
Q Consensus 235 ~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~ 314 (355)
.++|+++|+||+|+.+.+.+..++...+++
T Consensus 126 --------------------------------------------------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 155 (195)
T 3bc1_A 126 --------------------------------------------------ENPDIVLCGNKSDLEDQRAVKEEEARELAE 155 (195)
T ss_dssp --------------------------------------------------SSCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred --------------------------------------------------CCCCEEEEEECcccccccccCHHHHHHHHH
Confidence 246667777777765555566666677777
Q ss_pred hcCcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725 315 ELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346 (355)
Q Consensus 315 ~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~ 346 (355)
..+++++++||++|.||+++|++|.+.+.+..
T Consensus 156 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 187 (195)
T 3bc1_A 156 KYGIPYFETSAANGTNISHAIEMLLDLIMKRM 187 (195)
T ss_dssp HHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 77889999999999999999999999987654
No 36
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.95 E-value=7.5e-27 Score=196.53 Aligned_cols=103 Identities=35% Similarity=0.728 Sum_probs=85.3
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
..+.+||+|+|++|||||||+++|++..+.. .+.++++.++....+.+++....+.+
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~-----------------------~~~~t~~~~~~~~~~~~~~~~~~~~i 78 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSH-----------------------DSRTTIGVEFSTRTVMLGTAAVKAQI 78 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCS-----------------------SCCCCSSEEEEEEEEEETTEEEEEEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCC-----------------------CCCCccceeEEEEEEEECCEEEEEEE
Confidence 3457999999999999999999999955433 34456677777777777888899999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
|||||++.+..++..+++.+|++++|||++++.+|+.+..|+..+.
T Consensus 79 ~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~ 124 (193)
T 2oil_A 79 WDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELY 124 (193)
T ss_dssp EEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred EeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 9999999998888888899999999999988888877777766653
No 37
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.7e-27 Score=200.31 Aligned_cols=169 Identities=40% Similarity=0.681 Sum_probs=136.3
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
....+||+++|++|||||||+++|++..+...+ .++.+.++....+..++..+.+.+
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----------------------~~t~~~~~~~~~~~~~~~~~~~~i 76 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAF-----------------------VSTVGIDFKVKTVYRHEKRVKLQI 76 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCE-----------------------EEEETTTEEEEEEEETTTTEEEEE
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCccc-----------------------CCCeeeEEEEEEEEECCEEEEEEE
Confidence 346799999999999999999999996654443 445566677777777788889999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS 169 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (355)
|||||++.+..++..+++.+|++++|||++++.+|+.+..|+..+...
T Consensus 77 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-------------------------------- 124 (191)
T 3dz8_A 77 WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTY-------------------------------- 124 (191)
T ss_dssp ECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH--------------------------------
T ss_pred EeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHh--------------------------------
Confidence 999999999988888899999999999999888888777776665321
Q ss_pred cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725 170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS 249 (355)
Q Consensus 170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~ 249 (355)
T Consensus 125 -------------------------------------------------------------------------------- 124 (191)
T 3dz8_A 125 -------------------------------------------------------------------------------- 124 (191)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCC
Q psy15725 250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 329 (355)
Q Consensus 250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~ 329 (355)
...++|+++|+||+|+.+.+.+..++...+++..+++++++||++|.
T Consensus 125 ---------------------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (191)
T 3dz8_A 125 ---------------------------------SWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENI 171 (191)
T ss_dssp ---------------------------------SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred ---------------------------------cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCC
Confidence 11356777777777776566677777778888888999999999999
Q ss_pred CHHHHHHHHHHHcCCCC
Q psy15725 330 NVKQLFRRVAAALPGMD 346 (355)
Q Consensus 330 gv~~l~~~l~~~i~~~~ 346 (355)
||+++|++|.+.+....
T Consensus 172 gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 172 SVRQAFERLVDAICDKM 188 (191)
T ss_dssp SHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999886543
No 38
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.95 E-value=7.8e-27 Score=191.88 Aligned_cols=167 Identities=28% Similarity=0.381 Sum_probs=121.3
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 92 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~ 92 (355)
.+||+++|++|||||||+++|.+..+... ..++.+.++....+.+++..+.+.+|||
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 58 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHA-----------------------HEMENSEDTYERRIMVDKEEVTLIVYDI 58 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-----------------------------------CEEEEEEEETTEEEEEEEECC
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccc-----------------------ccCCCcCCeeeEEEEECCeEEEEEEEEC
Confidence 47999999999999999999987443222 2223334566666778888899999999
Q ss_pred CCcccccc-cccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725 93 AGQERFRS-LIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW 171 (355)
Q Consensus 93 ~g~~~~~~-~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (355)
||++.+.. ++..+++.+|++++|||++++++|+.+..|+.++....
T Consensus 59 ~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--------------------------------- 105 (169)
T 3q85_A 59 WEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGR--------------------------------- 105 (169)
T ss_dssp CCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHS---------------------------------
T ss_pred CCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcc---------------------------------
Confidence 99988876 66667788888888888888888877777765553210
Q ss_pred cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725 172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI 251 (355)
Q Consensus 172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~ 251 (355)
T Consensus 106 -------------------------------------------------------------------------------- 105 (169)
T 3q85_A 106 -------------------------------------------------------------------------------- 105 (169)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725 252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 331 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv 331 (355)
...++|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.||
T Consensus 106 -------------------------------~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 154 (169)
T 3q85_A 106 -------------------------------PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNT 154 (169)
T ss_dssp -------------------------------TTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSH
T ss_pred -------------------------------cCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCH
Confidence 0035778888888887766777888888888888999999999999999
Q ss_pred HHHHHHHHHHcCCCC
Q psy15725 332 KQLFRRVAAALPGMD 346 (355)
Q Consensus 332 ~~l~~~l~~~i~~~~ 346 (355)
+++|++|.+.+..+|
T Consensus 155 ~~l~~~l~~~i~~~r 169 (169)
T 3q85_A 155 RELFEGAVRQIRLRR 169 (169)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999886543
No 39
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.95 E-value=5.6e-27 Score=193.78 Aligned_cols=168 Identities=32% Similarity=0.423 Sum_probs=122.8
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+.+||+++|++|||||||+++|.+..+... .++.+.++....+.+++..+.+.+||
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~D 58 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDL------------------------HEQLGEDVYERTLTVDGEDTTLVVVD 58 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----------------------------CCCSSSSEEEEEEEETTEEEEEEEEC
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccc------------------------cCccccceeEEEEEECCEEEEEEEEe
Confidence 568999999999999999999998554322 12344555666677788888999999
Q ss_pred cCCccc--ccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725 92 TAGQER--FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS 169 (355)
Q Consensus 92 ~~g~~~--~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (355)
|||++. +..+...+++.+|++++|||++++.+|+.+..|+..+....
T Consensus 59 ~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~------------------------------- 107 (175)
T 2nzj_A 59 TWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTH------------------------------- 107 (175)
T ss_dssp CC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-------------------------------
T ss_pred cCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-------------------------------
Confidence 999877 55566677778888888888888888877777765543210
Q ss_pred cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725 170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS 249 (355)
Q Consensus 170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~ 249 (355)
T Consensus 108 -------------------------------------------------------------------------------- 107 (175)
T 2nzj_A 108 -------------------------------------------------------------------------------- 107 (175)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCC
Q psy15725 250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 329 (355)
Q Consensus 250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~ 329 (355)
...++|+++|+||+|+.+.+.+..++...++...+++++++||++|.
T Consensus 108 ---------------------------------~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~ 154 (175)
T 2nzj_A 108 ---------------------------------QADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQH 154 (175)
T ss_dssp -------------------------------------CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTB
T ss_pred ---------------------------------ccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCC
Confidence 00357888888888887666677777777777788999999999999
Q ss_pred CHHHHHHHHHHHcCCCCC
Q psy15725 330 NVKQLFRRVAAALPGMDS 347 (355)
Q Consensus 330 gv~~l~~~l~~~i~~~~~ 347 (355)
||+++|++|.+.+...++
T Consensus 155 gi~~l~~~l~~~~~~~~~ 172 (175)
T 2nzj_A 155 NVAELFEGVVRQLRLRRR 172 (175)
T ss_dssp SHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhhc
Confidence 999999999999865443
No 40
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.95 E-value=8.9e-27 Score=191.15 Aligned_cols=101 Identities=40% Similarity=0.755 Sum_probs=84.1
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
..+||+++|++|||||||+++|.++.+. ..+.+|++.++....+.+++....+.+||
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-----------------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~D 60 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFT-----------------------KDYKKTIGVDFLERQIQVNDEDVRLMLWD 60 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCC-----------------------CCSSCCCSSSEEEEEEEETTEEEEEEEEC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCC-----------------------CCCCCceEEEEEEEEEEECCEEEEEEEEc
Confidence 5799999999999999999999985443 33455666677777777788888999999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
|||++.+...+..+++.+|++++|||++++.+++.+..|+..+.
T Consensus 61 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~ 104 (168)
T 1z2a_A 61 TAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVV 104 (168)
T ss_dssp CTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred CCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 99999999998888999999999999998888877777766553
No 41
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.95 E-value=3.3e-26 Score=194.64 Aligned_cols=167 Identities=41% Similarity=0.673 Sum_probs=133.6
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
...+||+++|++|||||||+++|.+..+. ..+.++++.++....+.+++..+.+.+|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-----------------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~ 62 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYT-----------------------NDYISTIGVDFKIKTVELDGKTVKLQIW 62 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCC-----------------------TTCCCSSCCCEEEEEEEETTEEEEEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC-----------------------CCCCCcccceeEEEEEEECCEEEEEEEE
Confidence 45799999999999999999999995543 3345566777777777788888899999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
||||++.+..++..+++.+|++++|||++++.+|+.+..|+..+...
T Consensus 63 Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~--------------------------------- 109 (206)
T 2bcg_Y 63 DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRY--------------------------------- 109 (206)
T ss_dssp CCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---------------------------------
T ss_pred eCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHh---------------------------------
Confidence 99999999988888888999999999998888887777776655321
Q ss_pred ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725 171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY 250 (355)
Q Consensus 171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~ 250 (355)
T Consensus 110 -------------------------------------------------------------------------------- 109 (206)
T 2bcg_Y 110 -------------------------------------------------------------------------------- 109 (206)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCC
Q psy15725 251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 330 (355)
Q Consensus 251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~g 330 (355)
...++|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.|
T Consensus 110 --------------------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 157 (206)
T 2bcg_Y 110 --------------------------------ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTN 157 (206)
T ss_dssp --------------------------------SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTT
T ss_pred --------------------------------cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 113566777777777665556666677777777889999999999999
Q ss_pred HHHHHHHHHHHcCCC
Q psy15725 331 VKQLFRRVAAALPGM 345 (355)
Q Consensus 331 v~~l~~~l~~~i~~~ 345 (355)
|+++|++|.+.+...
T Consensus 158 i~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 158 VEDAFLTMARQIKES 172 (206)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988644
No 42
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.95 E-value=1.4e-26 Score=190.37 Aligned_cols=101 Identities=41% Similarity=0.823 Sum_probs=79.3
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
..+||+++|++|||||||+++|++..+... +.++++.++....+.+++..+.+.+||
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D 58 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPS-----------------------FITTIGIDFKIKTVDINGKKVKLQIWD 58 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC------------------------------CCEEEEEEESSSCEEEEEEEC
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCC-----------------------CCCccceeEEEEEEEECCEEEEEEEEe
Confidence 358999999999999999999999554333 345556666667777778888999999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
|||++.+...+..+++.+|++++|||++++.+++.+..|+..+.
T Consensus 59 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~ 102 (170)
T 1g16_A 59 TAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVN 102 (170)
T ss_dssp CTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred CCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 99999999888888999999999999988888877777766653
No 43
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.95 E-value=8.4e-27 Score=191.11 Aligned_cols=165 Identities=30% Similarity=0.412 Sum_probs=115.2
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+.+||+++|++|||||||+++|.+...... .++.+..+ .....+++....+.+||
T Consensus 1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~~~------------------------~~~~~~~~-~~~~~~~~~~~~~~i~D 55 (166)
T 3q72_A 1 SVYKVLLLGAPGVGKSALARIFGGVEDGPE------------------------AEAAGHTY-DRSIVVDGEEASLMVYD 55 (166)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHCCC----------------------------------CEE-EEEEEETTEEEEEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHcCccccCC------------------------CCccccce-EEEEEECCEEEEEEEEE
Confidence 358999999999999999999987443211 22333333 34556778889999999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW 171 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (355)
|+|++.+..++..+++.+|++++|||++++.+|+.+..|+..+....
T Consensus 56 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--------------------------------- 102 (166)
T 3q72_A 56 IWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRAR--------------------------------- 102 (166)
T ss_dssp CC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---------------------------------
T ss_pred CCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---------------------------------
Confidence 99999999999999999999999999999999988888877664210
Q ss_pred cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725 172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI 251 (355)
Q Consensus 172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~ 251 (355)
T Consensus 103 -------------------------------------------------------------------------------- 102 (166)
T 3q72_A 103 -------------------------------------------------------------------------------- 102 (166)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725 252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 331 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv 331 (355)
...++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.||
T Consensus 103 -------------------------------~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 151 (166)
T 3q72_A 103 -------------------------------QTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNV 151 (166)
T ss_dssp ----------------------------------CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSH
T ss_pred -------------------------------CCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCH
Confidence 0035688888888888777778888888888888999999999999999
Q ss_pred HHHHHHHHHHcCCC
Q psy15725 332 KQLFRRVAAALPGM 345 (355)
Q Consensus 332 ~~l~~~l~~~i~~~ 345 (355)
+++|++|.+.+..+
T Consensus 152 ~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 152 QALFEGVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987643
No 44
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.95 E-value=4.7e-27 Score=199.13 Aligned_cols=169 Identities=38% Similarity=0.655 Sum_probs=127.8
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+.+||+|+|++|||||||+++|+++.+.. .+.++++.++....+.+++....+.+|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~-----------------------~~~~t~~~~~~~~~~~~~~~~~~l~l~ 79 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQ-----------------------DSNHTIGVEFGSRVVNVGGKTVKLQIW 79 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-----------------------------------CCEEEEEEEETTEEEEEEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCc-----------------------cCCCcccceeEEEEEEECCeeeEEEEE
Confidence 457999999999999999999999855433 334556667777777778888899999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
||||++.+..++..+++.+|++++|||++++.+|+.+..|+..+...
T Consensus 80 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--------------------------------- 126 (200)
T 2o52_A 80 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTL--------------------------------- 126 (200)
T ss_dssp CCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH---------------------------------
T ss_pred cCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh---------------------------------
Confidence 99999999888888899999999999999888888777776665321
Q ss_pred ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725 171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY 250 (355)
Q Consensus 171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~ 250 (355)
T Consensus 127 -------------------------------------------------------------------------------- 126 (200)
T 2o52_A 127 -------------------------------------------------------------------------------- 126 (200)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCC
Q psy15725 251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 330 (355)
Q Consensus 251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~g 330 (355)
...++|+++|+||+|+.+.+.+...++..+++..+++++++||++|.|
T Consensus 127 --------------------------------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g 174 (200)
T 2o52_A 127 --------------------------------ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGEN 174 (200)
T ss_dssp --------------------------------TCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred --------------------------------cCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 112456666666666655555666666777777889999999999999
Q ss_pred HHHHHHHHHHHcCCCCC
Q psy15725 331 VKQLFRRVAAALPGMDS 347 (355)
Q Consensus 331 v~~l~~~l~~~i~~~~~ 347 (355)
|+++|++|.+.+.+...
T Consensus 175 i~~l~~~l~~~i~~~~~ 191 (200)
T 2o52_A 175 VEEAFLKCARTILNKID 191 (200)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999998876543
No 45
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=2.6e-26 Score=193.37 Aligned_cols=181 Identities=25% Similarity=0.466 Sum_probs=138.1
Q ss_pred CCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEE
Q psy15725 6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV 85 (355)
Q Consensus 6 ~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 85 (355)
....+.+.+||+++|++|||||||+++|.++.+...+ .+|++..+ ...+.+++..+
T Consensus 11 ~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~-----------------------~~t~~~~~-~~~~~~~~~~~ 66 (194)
T 2atx_A 11 AHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEY-----------------------VPTVFDHY-AVSVTVGGKQY 66 (194)
T ss_dssp SSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSC-----------------------CCSSCCCE-EEEEESSSCEE
T ss_pred CCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCC-----------------------CCccccee-EEEEEECCEEE
Confidence 3344567899999999999999999999996554443 33444333 33455667778
Q ss_pred EEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCc
Q psy15725 86 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164 (355)
Q Consensus 86 ~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (355)
.+.+|||||+++|..++..+++.+|++++|||++++.+|+.+. .|+..+...
T Consensus 67 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--------------------------- 119 (194)
T 2atx_A 67 LLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY--------------------------- 119 (194)
T ss_dssp EEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH---------------------------
T ss_pred EEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh---------------------------
Confidence 9999999999999999999999999999999999999999987 798888643
Q ss_pred cccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccc
Q psy15725 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFR 244 (355)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~ 244 (355)
..++|+++|+||+|+.+...
T Consensus 120 ---------------~~~~piilv~nK~Dl~~~~~--------------------------------------------- 139 (194)
T 2atx_A 120 ---------------APNVPFLLIGTQIDLRDDPK--------------------------------------------- 139 (194)
T ss_dssp ---------------STTCCEEEEEECTTSTTCHH---------------------------------------------
T ss_pred ---------------CCCCCEEEEEEChhhccccc---------------------------------------------
Confidence 13789999999999743110
Q ss_pred ccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEe
Q psy15725 245 SLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIET 323 (355)
Q Consensus 245 ~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~ 323 (355)
..+.+.. ...+.+..+++..+++..++ +++++
T Consensus 140 ------------------------------~~~~~~~-----------------~~~~~v~~~~~~~~~~~~~~~~~~~~ 172 (194)
T 2atx_A 140 ------------------------------TLARLND-----------------MKEKPICVEQGQKLAKEIGACCYVEC 172 (194)
T ss_dssp ------------------------------HHHHHTT-----------------TTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred ------------------------------chhhccc-----------------ccCcccCHHHHHHHHHHcCCcEEEEe
Confidence 0000000 01234556677778877776 99999
Q ss_pred cCCCCCCHHHHHHHHHHHcCC
Q psy15725 324 SAKAGYNVKQLFRRVAAALPG 344 (355)
Q Consensus 324 SA~~~~gv~~l~~~l~~~i~~ 344 (355)
||++|.||+++|++|.+.+..
T Consensus 173 Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 173 SALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred eCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999998764
No 46
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.95 E-value=1.2e-26 Score=194.66 Aligned_cols=168 Identities=39% Similarity=0.653 Sum_probs=130.4
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
..+.+||+++|++|||||||+++|+++.+.. .+.++++.++....+.+++....+.+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------~~~~t~~~~~~~~~~~~~~~~~~~~l 73 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPD-----------------------RTEATIGVDFRERAVDIDGERIKIQL 73 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCS-----------------------SCCCCCSCCEEEEEEEETTEEEEEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------CCCCCcceEEEEEEEEECCEEEEEEE
Confidence 3467999999999999999999999955433 34556666777777778888889999
Q ss_pred EecCCccccc-ccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725 90 WDTAGQERFR-SLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168 (355)
Q Consensus 90 ~D~~g~~~~~-~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (355)
|||||++.+. .++..+++.+|++++|||++++.+|+.+..|+.++....
T Consensus 74 ~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~------------------------------ 123 (189)
T 1z06_A 74 WDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL------------------------------ 123 (189)
T ss_dssp EECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHC------------------------------
T ss_pred EECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc------------------------------
Confidence 9999999888 788888889999999999998888887777766654220
Q ss_pred ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP 248 (355)
Q Consensus 169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~ 248 (355)
T Consensus 124 -------------------------------------------------------------------------------- 123 (189)
T 1z06_A 124 -------------------------------------------------------------------------------- 123 (189)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCC
Q psy15725 249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 328 (355)
Q Consensus 249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~ 328 (355)
...++|+++|+||+|+.+.+.+..++...+++..+++++++||++|
T Consensus 124 ----------------------------------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 169 (189)
T 1z06_A 124 ----------------------------------LANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNP 169 (189)
T ss_dssp ----------------------------------CCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSG
T ss_pred ----------------------------------CCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcC
Confidence 0135677777777777665666677777788888899999999999
Q ss_pred ---CCHHHHHHHHHHHcCC
Q psy15725 329 ---YNVKQLFRRVAAALPG 344 (355)
Q Consensus 329 ---~gv~~l~~~l~~~i~~ 344 (355)
.||+++|++|.+.+++
T Consensus 170 ~~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 170 NDNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp GGGSCHHHHHHHHC-----
T ss_pred CcccCHHHHHHHHHHHHhh
Confidence 9999999999988754
No 47
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.95 E-value=1.3e-26 Score=194.16 Aligned_cols=169 Identities=24% Similarity=0.402 Sum_probs=129.5
Q ss_pred CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ 88 (355)
Q Consensus 9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 88 (355)
++.+.+||+++|++|||||||+++|+++.+.. .+.+|++..+ .....+++..+.+.
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~-----------------------~~~~t~~~~~-~~~~~~~~~~~~l~ 72 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFIS-----------------------EYDPNLEDTY-SSEETVDHQPVHLR 72 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCS-----------------------CCCTTCCEEE-EEEEEETTEEEEEE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCc-----------------------ccCCCcccee-eEEEEECCEEEEEE
Confidence 45678999999999999999999999955443 3445555444 34456778889999
Q ss_pred EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725 89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168 (355)
Q Consensus 89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (355)
+|||+|++.+..+ ..+++.+|++++|||++++++|+.+..|+..+....
T Consensus 73 i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~------------------------------ 121 (187)
T 3c5c_A 73 VMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHA------------------------------ 121 (187)
T ss_dssp EEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH------------------------------
T ss_pred EEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh------------------------------
Confidence 9999999888775 568888999999999999888888888877664210
Q ss_pred ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP 248 (355)
Q Consensus 169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~ 248 (355)
T Consensus 122 -------------------------------------------------------------------------------- 121 (187)
T 3c5c_A 122 -------------------------------------------------------------------------------- 121 (187)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecC-CC
Q psy15725 249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSA-KA 327 (355)
Q Consensus 249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA-~~ 327 (355)
.....++|+++|+||+|+.+.+.+..+++..+++..+++++++|| ++
T Consensus 122 --------------------------------~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~ 169 (187)
T 3c5c_A 122 --------------------------------KETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLD 169 (187)
T ss_dssp --------------------------------HHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSC
T ss_pred --------------------------------hccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCc
Confidence 000146788888888888766777778888888888999999999 89
Q ss_pred CCCHHHHHHHHHHHcCC
Q psy15725 328 GYNVKQLFRRVAAALPG 344 (355)
Q Consensus 328 ~~gv~~l~~~l~~~i~~ 344 (355)
|.||+++|++|.+.+.+
T Consensus 170 g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 170 FEHVQHVFHEAVREARR 186 (187)
T ss_dssp SHHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHHhh
Confidence 99999999999998753
No 48
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.95 E-value=2.9e-26 Score=194.48 Aligned_cols=165 Identities=41% Similarity=0.723 Sum_probs=131.5
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
..+||+++|++|||||||+++|++..+.. .+.++++.++....+..++....+.+||
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------~~~~t~~~~~~~~~~~~~~~~~~~~l~D 63 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTP-----------------------AFVSTVGIDFKVKTIYRNDKRIKLQIWD 63 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCS-----------------------CCCCCCSEEEEEEEEEETTEEEEEEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------CcCCccceeEEEEEEEECCeEEEEEEEE
Confidence 56999999999999999999999955433 3445667777777777788889999999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW 171 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (355)
|||++.+...+..+++.+|++++|||++++.+|+.+..|+..+..
T Consensus 64 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~----------------------------------- 108 (203)
T 1zbd_A 64 TAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKT----------------------------------- 108 (203)
T ss_dssp ECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHH-----------------------------------
T ss_pred CCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH-----------------------------------
Confidence 999998888888888888888888888887777776666655432
Q ss_pred cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725 172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI 251 (355)
Q Consensus 172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~ 251 (355)
T Consensus 109 -------------------------------------------------------------------------------- 108 (203)
T 1zbd_A 109 -------------------------------------------------------------------------------- 108 (203)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725 252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 331 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv 331 (355)
....++|+++|+||+|+.+.+.+..++...+++..+++++++||++|.||
T Consensus 109 ------------------------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 158 (203)
T 1zbd_A 109 ------------------------------YSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINV 158 (203)
T ss_dssp ------------------------------HSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSS
T ss_pred ------------------------------hcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCH
Confidence 11135677777777777665666677777788888899999999999999
Q ss_pred HHHHHHHHHHcCC
Q psy15725 332 KQLFRRVAAALPG 344 (355)
Q Consensus 332 ~~l~~~l~~~i~~ 344 (355)
+++|++|.+.+.+
T Consensus 159 ~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 159 KQTFERLVDVICE 171 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 49
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.95 E-value=9.8e-27 Score=195.83 Aligned_cols=103 Identities=41% Similarity=0.768 Sum_probs=80.6
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
....+||+++|++|||||||+++|++..+ ...+.++++.++....+.+++..+.+.+
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~-----------------------~~~~~~t~~~~~~~~~~~~~~~~~~l~l 79 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTF-----------------------CEACKSTVGVDFKIKTVELRGKKIRLQI 79 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC-------------------------------CCTTEEEEEEEEEETTEEEEEEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCC-----------------------CcCCCCccceeEEEEEEEECCeEEEEEE
Confidence 34579999999999999999999998543 3334556677777777778888889999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
|||||++.+...+..+++.+|++++|||++++.+++.+..|+..+.
T Consensus 80 ~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~ 125 (192)
T 2il1_A 80 WDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMID 125 (192)
T ss_dssp EEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred EeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 9999999988888888888888888888888888877777765553
No 50
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.95 E-value=3.2e-27 Score=199.13 Aligned_cols=187 Identities=20% Similarity=0.239 Sum_probs=137.1
Q ss_pred CCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeee-eecCcE
Q psy15725 6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTM-YLEDRT 84 (355)
Q Consensus 6 ~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~ 84 (355)
+.....+.+||+++|++|||||||++. +.+.+...+.++. ......+.+|++.++....+ .+++..
T Consensus 7 ~~~~~~~~~ki~vvG~~~~GKssL~~~-l~~~~~~~~~~~~------------~~~~~~~~~t~~~~~~~~~~~~~~~~~ 73 (198)
T 3t1o_A 7 NFANREINFKIVYYGPGLSGKTTNLKW-IYSKVPEGRKGEM------------VSLATEDERTLFFDFLPLDIGEVKGFK 73 (198)
T ss_dssp ETTTTEEEEEEEEECSTTSSHHHHHHH-HHHTSCGGGBCCC------------EEEECSSCEEEEEEECCSSCCCSSSCE
T ss_pred chhccccccEEEEECCCCCCHHHHHHH-HHhhccccccccc------------cccccccccceeeeecccccccccCCc
Confidence 344556789999999999999999955 4555555544432 11223456788888777776 778888
Q ss_pred EEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCc
Q psy15725 85 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164 (355)
Q Consensus 85 ~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (355)
+.+.+|||||++.|..++..+++.+|++++|||++++.+++....
T Consensus 74 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s----------------------------------- 118 (198)
T 3t1o_A 74 TRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAES----------------------------------- 118 (198)
T ss_dssp EEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHH-----------------------------------
T ss_pred eEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHH-----------------------------------
Confidence 999999999999999999999999999999999985433332211
Q ss_pred cccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccc
Q psy15725 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFR 244 (355)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~ 244 (355)
T Consensus 119 -------------------------------------------------------------------------------- 118 (198)
T 3t1o_A 119 -------------------------------------------------------------------------------- 118 (198)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEe
Q psy15725 245 SLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIET 323 (355)
Q Consensus 245 ~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~ 323 (355)
++.+..|+..+.. ...++|+++|+||+|+.+ .+..+++..+++..++ +++++
T Consensus 119 ------------------------~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~ 171 (198)
T 3t1o_A 119 ------------------------MRNMRENLAEYGL-TLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKFPVLEA 171 (198)
T ss_dssp ------------------------HHHHHHHHHHTTC-CTTSSCEEEEEECTTSTT--CCCHHHHHHHHCTTCCSCEEEC
T ss_pred ------------------------HHHHHHHHHhhcc-ccCCCCEEEEEEchhccc--ccCHHHHHHHHHhcCCceEEEE
Confidence 1122233333311 114678888888888753 3667777788888888 99999
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCCC
Q psy15725 324 SAKAGYNVKQLFRRVAAALPGMDS 347 (355)
Q Consensus 324 SA~~~~gv~~l~~~l~~~i~~~~~ 347 (355)
||++|.||+++|++|.+.+.+..+
T Consensus 172 Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 172 VATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp BGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred ecCCCcCHHHHHHHHHHHHHHHhh
Confidence 999999999999999998876543
No 51
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.94 E-value=5.4e-26 Score=188.30 Aligned_cols=171 Identities=34% Similarity=0.588 Sum_probs=136.3
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
..+.+||+++|++|||||||+++++++.+ ...+.++++.++....+.+++..+.+.+
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i 60 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKF-----------------------DTQLFHTIGVEFLNKDLEVDGHFVTMQI 60 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCC-----------------------CC----CCSEEEEEEEEEETTEEEEEEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCC-----------------------CCCCCCceeeeEEEEEEEECCEEEEEEE
Confidence 45679999999999999999999998544 3344566677777778888888899999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS 169 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (355)
|||||++.+...+..+++.+|++++|||++++.+++.+..|+..+......
T Consensus 61 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----------------------------- 111 (177)
T 1wms_A 61 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADV----------------------------- 111 (177)
T ss_dssp EECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTC-----------------------------
T ss_pred EeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccc-----------------------------
Confidence 999999999999999999999999999999999998888887776432100
Q ss_pred cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725 170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS 249 (355)
Q Consensus 170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~ 249 (355)
T Consensus 112 -------------------------------------------------------------------------------- 111 (177)
T 1wms_A 112 -------------------------------------------------------------------------------- 111 (177)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHh-hcCcEEEEecCCCC
Q psy15725 250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK-ELNVMFIETSAKAG 328 (355)
Q Consensus 250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~SA~~~ 328 (355)
....++|+++|+||+|+. .+.+..++...+++ ..+++++++||++|
T Consensus 112 --------------------------------~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (177)
T 1wms_A 112 --------------------------------KEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDA 158 (177)
T ss_dssp --------------------------------SCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTC
T ss_pred --------------------------------cccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCC
Confidence 001467888888888876 45566667777776 55689999999999
Q ss_pred CCHHHHHHHHHHHcCCC
Q psy15725 329 YNVKQLFRRVAAALPGM 345 (355)
Q Consensus 329 ~gv~~l~~~l~~~i~~~ 345 (355)
.||+++|++|.+.+.+.
T Consensus 159 ~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 159 TNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp TTHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999998753
No 52
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=196.41 Aligned_cols=104 Identities=38% Similarity=0.747 Sum_probs=81.0
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
..+.+||+++|++|||||||+++|++..+.. .+.++++.++....+.+++....+.+
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------~~~~t~~~~~~~~~~~~~~~~~~l~i 81 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRE-----------------------NISATLGVDFQMKTLIVDGERTVLQL 81 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC---------------------------------CEEEEEEETTEEEEEEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCc-----------------------cCCCCccceeEEEEEEECCEEEEEEE
Confidence 3457999999999999999999999955433 34455666777777778888889999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT 136 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~ 136 (355)
|||||++.+..++..+++.+|++++|||++++.+++.+..|+..+..
T Consensus 82 ~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~ 128 (199)
T 2p5s_A 82 WDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIED 128 (199)
T ss_dssp EECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred EECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888888877754
No 53
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.94 E-value=2.5e-26 Score=188.21 Aligned_cols=165 Identities=35% Similarity=0.584 Sum_probs=126.7
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+.+||+++|++|||||||++++.+..+...+ .++.+..+ ...+.+++..+.+.+||
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-----------------------~~t~~~~~-~~~~~~~~~~~~~~l~D 58 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDY-----------------------EPTKADSY-RKKVVLDGEEVQIDILD 58 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCC-----------------------CTTCCEEE-EEEEEETTEEEEEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCC-----------------------CCCcceEE-EEEEEECCEEEEEEEEE
Confidence 5799999999999999999999996544333 33444333 33455677788999999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW 171 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (355)
|||++++...+..+++.+|++++|||++++.+|+.+..|+..+....
T Consensus 59 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--------------------------------- 105 (168)
T 1u8z_A 59 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK--------------------------------- 105 (168)
T ss_dssp CCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH---------------------------------
T ss_pred CCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---------------------------------
Confidence 99999998888888889999999999998888887777766653210
Q ss_pred cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725 172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI 251 (355)
Q Consensus 172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~ 251 (355)
T Consensus 106 -------------------------------------------------------------------------------- 105 (168)
T 1u8z_A 106 -------------------------------------------------------------------------------- 105 (168)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725 252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 331 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv 331 (355)
...++|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.||
T Consensus 106 -------------------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (168)
T 1u8z_A 106 -------------------------------EDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANV 154 (168)
T ss_dssp -------------------------------CCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTH
T ss_pred -------------------------------CCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCH
Confidence 0035677777788777665666677777777778899999999999999
Q ss_pred HHHHHHHHHHcCC
Q psy15725 332 KQLFRRVAAALPG 344 (355)
Q Consensus 332 ~~l~~~l~~~i~~ 344 (355)
+++|++|.+.+.+
T Consensus 155 ~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 155 DKVFFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998754
No 54
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=197.23 Aligned_cols=169 Identities=35% Similarity=0.584 Sum_probs=132.8
Q ss_pred CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ 88 (355)
Q Consensus 9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 88 (355)
.+.+.+||+|+|++|||||||+++|.+..+... +.+|.+..+ ...+.+++..+.+.
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------------~~~t~~~~~-~~~~~~~~~~~~~~ 65 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVED-----------------------YEPTKADSY-RKKVVLDGEEVQID 65 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTT-----------------------CCTTCCEEE-EEEEEETTEEEEEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCC-----------------------CCCccceEE-EEEEEECCEEEEEE
Confidence 456789999999999999999999998654433 334444333 34456677778999
Q ss_pred EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725 89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168 (355)
Q Consensus 89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (355)
+|||||++.+..++..+++.+|++++|||++++.+|+.+..|+..+....
T Consensus 66 l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~------------------------------ 115 (206)
T 2bov_A 66 ILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK------------------------------ 115 (206)
T ss_dssp EEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT------------------------------
T ss_pred EEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc------------------------------
Confidence 99999999999888888889999999999998888887777766654210
Q ss_pred ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP 248 (355)
Q Consensus 169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~ 248 (355)
T Consensus 116 -------------------------------------------------------------------------------- 115 (206)
T 2bov_A 116 -------------------------------------------------------------------------------- 115 (206)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCC
Q psy15725 249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 328 (355)
Q Consensus 249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~ 328 (355)
...++|+++|+||+|+.+.+.+..+++..+++..+++++++||++|
T Consensus 116 ----------------------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 161 (206)
T 2bov_A 116 ----------------------------------EDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTR 161 (206)
T ss_dssp ----------------------------------TCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTC
T ss_pred ----------------------------------CCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCC
Confidence 0135777788888887666667777777788778899999999999
Q ss_pred CCHHHHHHHHHHHcCCC
Q psy15725 329 YNVKQLFRRVAAALPGM 345 (355)
Q Consensus 329 ~gv~~l~~~l~~~i~~~ 345 (355)
.||+++|++|.+.+...
T Consensus 162 ~gi~~l~~~l~~~i~~~ 178 (206)
T 2bov_A 162 ANVDKVFFDLMREIRAR 178 (206)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHc
Confidence 99999999999988653
No 55
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.94 E-value=1.5e-26 Score=193.24 Aligned_cols=171 Identities=35% Similarity=0.577 Sum_probs=130.8
Q ss_pred CCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEE
Q psy15725 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRL 87 (355)
Q Consensus 8 ~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 87 (355)
....+.+||+++|++|||||||+++|.+..+...+ .++.+..+ ...+..++..+.+
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----------------------~~t~~~~~-~~~~~~~~~~~~~ 68 (187)
T 2a9k_A 13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDY-----------------------EPTKADSY-RKKVVLDGEEVQI 68 (187)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSC-----------------------CTTCCEEE-EEEEEETTEEEEE
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcC-----------------------CCccceEE-EEEEEECCEEEEE
Confidence 34567899999999999999999999996544433 33444333 3445567777899
Q ss_pred EEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcccc
Q psy15725 88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ 167 (355)
Q Consensus 88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (355)
.+|||||++.+..++..+++.+|++++|||++++.+|+.+..|+..+....
T Consensus 69 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~----------------------------- 119 (187)
T 2a9k_A 69 DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK----------------------------- 119 (187)
T ss_dssp EEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-----------------------------
T ss_pred EEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-----------------------------
Confidence 999999999998888888889999999999988888877777766653210
Q ss_pred CccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccc
Q psy15725 168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLI 247 (355)
Q Consensus 168 ~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~ 247 (355)
T Consensus 120 -------------------------------------------------------------------------------- 119 (187)
T 2a9k_A 120 -------------------------------------------------------------------------------- 119 (187)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCC
Q psy15725 248 PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA 327 (355)
Q Consensus 248 ~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~ 327 (355)
...++|+++|+||+|+.+.+.+...+...+++..+++++++||++
T Consensus 120 -----------------------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (187)
T 2a9k_A 120 -----------------------------------EDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKT 164 (187)
T ss_dssp -----------------------------------CCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred -----------------------------------CCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCC
Confidence 003567777777777765556667777778888889999999999
Q ss_pred CCCHHHHHHHHHHHcCCCC
Q psy15725 328 GYNVKQLFRRVAAALPGMD 346 (355)
Q Consensus 328 ~~gv~~l~~~l~~~i~~~~ 346 (355)
|.||+++|++|.+.+.+.+
T Consensus 165 ~~gi~~l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 165 RANVDKVFFDLMREIRARK 183 (187)
T ss_dssp CTTHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhh
Confidence 9999999999999987543
No 56
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.94 E-value=5.2e-26 Score=189.83 Aligned_cols=179 Identities=28% Similarity=0.501 Sum_probs=138.0
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+.+||+++|++|||||||+++|.++.+...+.+ |++..+ ...+.+++..+.+.+|
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~-----------------------t~~~~~-~~~~~~~~~~~~~~i~ 58 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP-----------------------TVFDNY-SANVMVDGKPVNLGLW 58 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCC-----------------------CSCCEE-EEEEEETTEEEEEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCC-----------------------ccccee-EEEEEECCEEEEEEEE
Confidence 4679999999999999999999998665444433 333222 3445667788899999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS 169 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (355)
||||++.+...+..+++.+|++++|||++++.+|+.+. .|+..+....
T Consensus 59 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------------------------- 107 (186)
T 1mh1_A 59 DTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC------------------------------- 107 (186)
T ss_dssp CCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-------------------------------
T ss_pred ECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC-------------------------------
Confidence 99999999999999999999999999999999999986 7888876431
Q ss_pred cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725 170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS 249 (355)
Q Consensus 170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~ 249 (355)
.++|+++|+||+|+.+...
T Consensus 108 -----------~~~piilv~nK~Dl~~~~~-------------------------------------------------- 126 (186)
T 1mh1_A 108 -----------PNTPIILVGTKLDLRDDKD-------------------------------------------------- 126 (186)
T ss_dssp -----------TTSCEEEEEECHHHHTCHH--------------------------------------------------
T ss_pred -----------CCCCEEEEeEcccccccch--------------------------------------------------
Confidence 2789999999999732110
Q ss_pred cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCC
Q psy15725 250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAG 328 (355)
Q Consensus 250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~ 328 (355)
..+.+... ..+.+..+++..+++..++ +++++||++|
T Consensus 127 -------------------------~~~~~~~~-----------------~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 164 (186)
T 1mh1_A 127 -------------------------TIEKLKEK-----------------KLTPITYPQGLAMAKEIGAVKYLECSALTQ 164 (186)
T ss_dssp -------------------------HHHHHHHT-----------------TCCCCCHHHHHHHHHHTTCSEEEECCTTTC
T ss_pred -------------------------hhhhhccc-----------------ccccCCHHHHHHHHHhcCCcEEEEecCCCc
Confidence 00001110 1244556677778888886 9999999999
Q ss_pred CCHHHHHHHHHHHcCCCCC
Q psy15725 329 YNVKQLFRRVAAALPGMDS 347 (355)
Q Consensus 329 ~gv~~l~~~l~~~i~~~~~ 347 (355)
.||+++|++|.+.+.....
T Consensus 165 ~gi~~l~~~l~~~~~~~~~ 183 (186)
T 1mh1_A 165 RGLKTVFDEAIRAVLCPPP 183 (186)
T ss_dssp TTHHHHHHHHHHHHSCCCC
T ss_pred cCHHHHHHHHHHHHhcccc
Confidence 9999999999999987654
No 57
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.94 E-value=2.8e-26 Score=194.27 Aligned_cols=181 Identities=29% Similarity=0.487 Sum_probs=133.1
Q ss_pred CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ 88 (355)
Q Consensus 9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 88 (355)
...+.+||+++|++|||||||+++|.++.+... +.+|++..+ ...+..++..+.+.
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~-----------------------~~~t~~~~~-~~~~~~~~~~~~~~ 71 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTE-----------------------YIPTAFDNF-SAVVSVDGRPVRLQ 71 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC-------------------------------CCSSEEE-EEEEEETTEEEEEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCC-----------------------CCCccccee-EEEEEECCEEEEEE
Confidence 356689999999999999999999998554333 334444333 34556677788999
Q ss_pred EEecCCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCcccc
Q psy15725 89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ 167 (355)
Q Consensus 89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (355)
+|||||+++|..++..+++.+|++++|||++++.+|+.+. .|+..+...
T Consensus 72 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~------------------------------ 121 (201)
T 2q3h_A 72 LCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH------------------------------ 121 (201)
T ss_dssp EEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH------------------------------
T ss_pred EEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh------------------------------
Confidence 9999999999999999999999999999999999999986 798888643
Q ss_pred CccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccc
Q psy15725 168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLI 247 (355)
Q Consensus 168 ~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~ 247 (355)
..++|+++|+||+|+.+....
T Consensus 122 ------------~~~~p~ilv~nK~Dl~~~~~~----------------------------------------------- 142 (201)
T 2q3h_A 122 ------------CPKAPIILVGTQSDLREDVKV----------------------------------------------- 142 (201)
T ss_dssp ------------CSSSCEEEEEECGGGGGCHHH-----------------------------------------------
T ss_pred ------------CCCCCEEEEEECHhhhhchhh-----------------------------------------------
Confidence 137899999999997431100
Q ss_pred cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCC
Q psy15725 248 PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAK 326 (355)
Q Consensus 248 ~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~ 326 (355)
...+... ..+.+..+++..+++..++ ++++|||+
T Consensus 143 ----------------------------~~~~~~~-----------------~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 177 (201)
T 2q3h_A 143 ----------------------------LIELDKC-----------------KEKPVPEEAAKLLAEEIKAASYIECSAL 177 (201)
T ss_dssp ----------------------------HHHHHTT-----------------TCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred ----------------------------hhhhccc-----------------ccccCCHHHHHHHHHhcCCcEEEEEecC
Confidence 0001110 1244556677777777776 99999999
Q ss_pred CCCCHHHHHHHHHHHcCCCCC
Q psy15725 327 AGYNVKQLFRRVAAALPGMDS 347 (355)
Q Consensus 327 ~~~gv~~l~~~l~~~i~~~~~ 347 (355)
+|.||+++|++|.+.+.+.+.
T Consensus 178 ~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 178 TQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp TCTTHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhcccc
Confidence 999999999999999876544
No 58
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.94 E-value=3.8e-26 Score=190.79 Aligned_cols=177 Identities=25% Similarity=0.477 Sum_probs=134.8
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
+.+.+||+++|++|||||||+++|.+..+...+ .||++..+ ...+.+++..+.+.+
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-----------------------~~t~~~~~-~~~~~~~~~~~~~~i 59 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENY-----------------------VPTVFENY-TASFEIDTQRIELSL 59 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSC-----------------------CCCSEEEE-EEEEECSSCEEEEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCC-----------------------CCccceeE-EEEEEECCEEEEEEE
Confidence 456799999999999999999999996554443 34444443 334556777889999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhhH-HHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (355)
|||||++.|..++..+++.+|++++|||++++.+|+.+ ..|+..+...
T Consensus 60 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~------------------------------- 108 (184)
T 1m7b_A 60 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF------------------------------- 108 (184)
T ss_dssp EEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-------------------------------
T ss_pred EECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHH-------------------------------
Confidence 99999999999999999999999999999999999998 7898887643
Q ss_pred ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP 248 (355)
Q Consensus 169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~ 248 (355)
..++|+++|+||+|+.++..
T Consensus 109 -----------~~~~piilv~nK~Dl~~~~~------------------------------------------------- 128 (184)
T 1m7b_A 109 -----------CPNTKMLLVGCKSDLRTDVS------------------------------------------------- 128 (184)
T ss_dssp -----------CTTCEEEEEEECGGGGGCHH-------------------------------------------------
T ss_pred -----------CCCCCEEEEEEcchhhcchh-------------------------------------------------
Confidence 13789999999999742100
Q ss_pred ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC-cEEEEecCC-
Q psy15725 249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAK- 326 (355)
Q Consensus 249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~SA~- 326 (355)
....+... ..+.+..+++..+++..+ +++++|||+
T Consensus 129 --------------------------~~~~~~~~-----------------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 165 (184)
T 1m7b_A 129 --------------------------TLVELSNH-----------------RQTPVSYDQGANMAKQIGAATYIECSALQ 165 (184)
T ss_dssp --------------------------HHHHHHTT-----------------TCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred --------------------------hHhhhhhc-----------------ccCCCCHHHHHHHHHHcCCcEEEEeeecC
Confidence 00011110 124456667777887776 699999999
Q ss_pred CCCCHHHHHHHHHHHcCC
Q psy15725 327 AGYNVKQLFRRVAAALPG 344 (355)
Q Consensus 327 ~~~gv~~l~~~l~~~i~~ 344 (355)
++.||+++|++|.+.+.+
T Consensus 166 ~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 166 SENSVRDIFHVATLACVN 183 (184)
T ss_dssp BHHHHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHhc
Confidence 689999999999998764
No 59
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.94 E-value=1.9e-26 Score=188.71 Aligned_cols=164 Identities=35% Similarity=0.577 Sum_probs=127.6
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+.+||+++|++|||||||++++.++.+...+ .++.+ +.....+.+++....+.+||
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------------------~~~~~-~~~~~~~~~~~~~~~~~l~D 57 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKY-----------------------DPTIE-DFYRKEIEVDSSPSVLEILD 57 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCC-----------------------CTTCC-EEEEEEEEETTEEEEEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccC-----------------------CCCcc-eeEEEEEEECCEEEEEEEEE
Confidence 5689999999999999999999996544433 33444 22345566777888899999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW 171 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (355)
|||++.+..++..+++.+|++++|||++++.+++.+..|+..+....
T Consensus 58 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~--------------------------------- 104 (167)
T 1kao_A 58 TAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVK--------------------------------- 104 (167)
T ss_dssp CCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT---------------------------------
T ss_pred CCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc---------------------------------
Confidence 99999998888888888999999999998888877777766553210
Q ss_pred cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725 172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI 251 (355)
Q Consensus 172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~ 251 (355)
T Consensus 105 -------------------------------------------------------------------------------- 104 (167)
T 1kao_A 105 -------------------------------------------------------------------------------- 104 (167)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725 252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 331 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv 331 (355)
...+.|+++|+||+|+.+.+.+...+...+++..+++++++||++|.|+
T Consensus 105 -------------------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 153 (167)
T 1kao_A 105 -------------------------------RYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMV 153 (167)
T ss_dssp -------------------------------TTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHH
T ss_pred -------------------------------CCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCH
Confidence 0035677777777776655566666777777777889999999999999
Q ss_pred HHHHHHHHHHcC
Q psy15725 332 KQLFRRVAAALP 343 (355)
Q Consensus 332 ~~l~~~l~~~i~ 343 (355)
+++|++|.+.+.
T Consensus 154 ~~l~~~l~~~~~ 165 (167)
T 1kao_A 154 DELFAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998874
No 60
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.94 E-value=3.2e-26 Score=196.06 Aligned_cols=181 Identities=28% Similarity=0.521 Sum_probs=120.0
Q ss_pred CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ 88 (355)
Q Consensus 9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 88 (355)
...+.+||+++|++|||||||+++|+++.+...+ .+|++.. ....+.+++..+.+.
T Consensus 30 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~-----------------------~~t~~~~-~~~~~~~~~~~~~l~ 85 (214)
T 2j1l_A 30 PGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESY-----------------------TPTVFER-YMVNLQVKGKPVHLH 85 (214)
T ss_dssp --CCEEEEEEEECTTSSHHHHHHHHHC------------------------------CCCCCEE-EEEEEEETTEEEEEE
T ss_pred CCcceEEEEEECcCCCCHHHHHHHHHcCCCCCCC-----------------------CCcccee-EEEEEEECCEEEEEE
Confidence 3456799999999999999999999986554433 3333322 234456677888999
Q ss_pred EEecCCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCcccc
Q psy15725 89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ 167 (355)
Q Consensus 89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (355)
+|||||++.|..++..+++.+|++++|||++++.+|+.+. .|+..+...
T Consensus 86 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~------------------------------ 135 (214)
T 2j1l_A 86 IWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHF------------------------------ 135 (214)
T ss_dssp EEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHH------------------------------
T ss_pred EEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHh------------------------------
Confidence 9999999999999999999999999999999999999986 798888643
Q ss_pred CccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccc
Q psy15725 168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLI 247 (355)
Q Consensus 168 ~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~ 247 (355)
..++|+++|+||+|+...+..
T Consensus 136 ------------~~~~piilv~nK~Dl~~~~~~----------------------------------------------- 156 (214)
T 2j1l_A 136 ------------CKKVPIIVVGCKTDLRKDKSL----------------------------------------------- 156 (214)
T ss_dssp ------------CSSCCEEEEEECGGGGSCHHH-----------------------------------------------
T ss_pred ------------CCCCCEEEEEEChhhhccchh-----------------------------------------------
Confidence 137899999999997431100
Q ss_pred cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCC
Q psy15725 248 PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAK 326 (355)
Q Consensus 248 ~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~ 326 (355)
.+.+.. ...+.+..+++..+++..++ ++++|||+
T Consensus 157 ----------------------------~~~~~~-----------------~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 191 (214)
T 2j1l_A 157 ----------------------------VNKLRR-----------------NGLEPVTYHRGQEMARSVGAVAYLECSAR 191 (214)
T ss_dssp ----------------------------HHHHHH-----------------TTCCCCCHHHHHHHHHHTTCSEEEECBTT
T ss_pred ----------------------------hhhhcc-----------------cccCcccHHHHHHHHHhcCCCEEEEecCC
Confidence 000001 01244666777788888887 99999999
Q ss_pred CCCCHHHHHHHHHHHcCCCCC
Q psy15725 327 AGYNVKQLFRRVAAALPGMDS 347 (355)
Q Consensus 327 ~~~gv~~l~~~l~~~i~~~~~ 347 (355)
+|.||+++|++|.+.+.+.+.
T Consensus 192 ~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 192 LHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp TTBSHHHHHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999886654
No 61
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.94 E-value=9e-26 Score=187.28 Aligned_cols=95 Identities=23% Similarity=0.417 Sum_probs=75.0
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+.+||+++|++|||||||+++|.++.+.. +.||++.. ....+.+++..+.+.+|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~------------------------~~~t~~~~-~~~~~~~~~~~~~l~i~ 59 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV------------------------LEKTESEQ-YKKEMLVDGQTHLVLIR 59 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC------------------------CSSCSSSE-EEEEEEETTEEEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC------------------------cCCCccee-EEEEEEECCEEEEEEEE
Confidence 578999999999999999999999966543 23444433 34556677888899999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
||+|+++ ..+++.+|++++|||++++++|+.+..|++.+.
T Consensus 60 Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~ 99 (178)
T 2iwr_A 60 EEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLS 99 (178)
T ss_dssp ECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred ECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 9999876 456788999999999999888888888766654
No 62
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.94 E-value=3.4e-26 Score=195.51 Aligned_cols=177 Identities=29% Similarity=0.499 Sum_probs=132.4
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+.+||+++|++|||||||+++|.++.+...+ .+|++..+ ...+.+++..+.+.+|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~-----------------------~~t~~~~~-~~~~~~~~~~~~~~i~ 62 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDY-----------------------IPTVFDNF-SANVAVDGQIVNLGLW 62 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSC-----------------------CCSSCCCE-EEEEECSSCEEEEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccC-----------------------CCccceeE-EEEEEECCEEEEEEEE
Confidence 46799999999999999999999996654443 34444333 3345567778899999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS 169 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (355)
||||++.|..++..+++.+|++++|||++++++|+.+. .|+..+...
T Consensus 63 Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~-------------------------------- 110 (212)
T 2j0v_A 63 DTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRF-------------------------------- 110 (212)
T ss_dssp CCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--------------------------------
T ss_pred ECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--------------------------------
Confidence 99999999999999999999999999999999999986 798887643
Q ss_pred cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725 170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS 249 (355)
Q Consensus 170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~ 249 (355)
..++|+++|+||+|+.+.+.+
T Consensus 111 ----------~~~~piilv~nK~Dl~~~~~~------------------------------------------------- 131 (212)
T 2j0v_A 111 ----------APNVPIVLVGTKLDLRDDKGY------------------------------------------------- 131 (212)
T ss_dssp ----------CTTCCEEEEEECHHHHTCHHH-------------------------------------------------
T ss_pred ----------CCCCCEEEEEeCHHhhhCccc-------------------------------------------------
Confidence 126889999999996321100
Q ss_pred cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCC
Q psy15725 250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAG 328 (355)
Q Consensus 250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~ 328 (355)
.. + ....+..+++..+++..++ +++++||++|
T Consensus 132 ------------------------------~~---------------~--~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 164 (212)
T 2j0v_A 132 ------------------------------LA---------------D--HTNVITSTQGEELRKQIGAAAYIECSSKTQ 164 (212)
T ss_dssp ------------------------------HH---------------T--CSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred ------------------------------cc---------------c--ccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence 00 0 0123445566667777775 9999999999
Q ss_pred CCHHHHHHHHHHHcCCCCCCC
Q psy15725 329 YNVKQLFRRVAAALPGMDSTE 349 (355)
Q Consensus 329 ~gv~~l~~~l~~~i~~~~~~~ 349 (355)
.||+++|++|.+.+...+...
T Consensus 165 ~gi~~l~~~l~~~~~~~~~~~ 185 (212)
T 2j0v_A 165 QNVKAVFDTAIKVVLQPPRRK 185 (212)
T ss_dssp TTHHHHHHHHHHHHHCC----
T ss_pred CCHHHHHHHHHHHHhhhhhhc
Confidence 999999999999998765443
No 63
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=5.9e-26 Score=186.85 Aligned_cols=168 Identities=29% Similarity=0.462 Sum_probs=129.2
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+.+||+++|++|||||||+++|+++.+...+. ++++..+ ......++....+.+||
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-----------------------~t~~~~~-~~~~~~~~~~~~~~~~D 57 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYI-----------------------PTVEDTY-RQVISCDKSICTLQITD 57 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCC-----------------------CCSCEEE-EEEEEETTEEEEEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCC-----------------------CCccccE-EEEEEECCEEEEEEEEE
Confidence 46899999999999999999999965544333 3333332 23445667778899999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW 171 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (355)
|||++++...+..+++.+|++++|||++++.+++.+..|+..+.....
T Consensus 58 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~-------------------------------- 105 (172)
T 2erx_A 58 TTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG-------------------------------- 105 (172)
T ss_dssp CCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC--------------------------------
T ss_pred CCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC--------------------------------
Confidence 999999999888889999999999999998888887777666542200
Q ss_pred cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725 172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI 251 (355)
Q Consensus 172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~ 251 (355)
.
T Consensus 106 -------~------------------------------------------------------------------------ 106 (172)
T 2erx_A 106 -------D------------------------------------------------------------------------ 106 (172)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------C------------------------------------------------------------------------
Confidence 0
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725 252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 331 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv 331 (355)
..++|+++|+||+|+.+.+.+...+...+++..+++++++||++|.||
T Consensus 107 --------------------------------~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (172)
T 2erx_A 107 --------------------------------VESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNV 154 (172)
T ss_dssp ----------------------------------CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred --------------------------------CCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCH
Confidence 024677777777777655566666667777777899999999999999
Q ss_pred HHHHHHHHHHcCCCC
Q psy15725 332 KQLFRRVAAALPGMD 346 (355)
Q Consensus 332 ~~l~~~l~~~i~~~~ 346 (355)
+++|++|.+.+.+++
T Consensus 155 ~~l~~~l~~~~~~~~ 169 (172)
T 2erx_A 155 KELFQELLNLEKRRT 169 (172)
T ss_dssp HHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHHhhhh
Confidence 999999999887654
No 64
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.94 E-value=5.5e-26 Score=195.00 Aligned_cols=175 Identities=25% Similarity=0.435 Sum_probs=130.8
Q ss_pred CCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecC-cEE
Q psy15725 7 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED-RTV 85 (355)
Q Consensus 7 ~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~ 85 (355)
.......+||+++|++|||||||+++|+++.+. ..+.++.+............ ..+
T Consensus 5 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-----------------------~~~~~t~~~~~~~~~~~~~~~~~~ 61 (218)
T 4djt_A 5 MERRELTYKICLIGDGGVGKTTYINRVLDGRFE-----------------------KNYNATVGAVNHPVTFLDDQGNVI 61 (218)
T ss_dssp -----CEEEEEEECCTTSSHHHHHCBCTTCSTT-----------------------CEEETTTTEEEEEEEEEBTTSCEE
T ss_pred cccccCccEEEEECCCCCCHHHHHHHHhcCCCC-----------------------CCCCCccceeeEEEEEEeCCCcEE
Confidence 344567899999999999999999999985543 33445555555555544433 448
Q ss_pred EEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcc
Q psy15725 86 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165 (355)
Q Consensus 86 ~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (355)
.+.+|||||++.+..++..+++.+|++++|||++++.+++.+..|+..+...
T Consensus 62 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~---------------------------- 113 (218)
T 4djt_A 62 KFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAV---------------------------- 113 (218)
T ss_dssp EEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----------------------------
T ss_pred EEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHh----------------------------
Confidence 8999999999999888888888899999999988888887777776665321
Q ss_pred ccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccc
Q psy15725 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRS 245 (355)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~ 245 (355)
T Consensus 114 -------------------------------------------------------------------------------- 113 (218)
T 4djt_A 114 -------------------------------------------------------------------------------- 113 (218)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecC
Q psy15725 246 LIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSA 325 (355)
Q Consensus 246 ~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA 325 (355)
...++|+++|+||+|+.+.+.+.......++...+++++++||
T Consensus 114 -------------------------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (218)
T 4djt_A 114 -------------------------------------VGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISA 156 (218)
T ss_dssp -------------------------------------HCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBT
T ss_pred -------------------------------------cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEec
Confidence 1134677888888887666667777777788888899999999
Q ss_pred CCCCCHHHHHHHHHHHcCCCCCCC
Q psy15725 326 KAGYNVKQLFRRVAAALPGMDSTE 349 (355)
Q Consensus 326 ~~~~gv~~l~~~l~~~i~~~~~~~ 349 (355)
++|.||+++|++|.+.+.......
T Consensus 157 ~~g~gv~~l~~~l~~~~~~~~~~~ 180 (218)
T 4djt_A 157 KTAHNFGLPFLHLARIFTGRPDLI 180 (218)
T ss_dssp TTTBTTTHHHHHHHHHHHCCTTCC
T ss_pred CCCCCHHHHHHHHHHHHhcccccc
Confidence 999999999999999998765543
No 65
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.94 E-value=1.8e-25 Score=189.33 Aligned_cols=100 Identities=40% Similarity=0.818 Sum_probs=74.7
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCc--------
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR-------- 83 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-------- 83 (355)
+.+||+|+|++|||||||+++|++..+...+.|++ +.++....+.+++.
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-----------------------~~~~~~~~~~~~~~~~~~~~~~ 62 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTI-----------------------GASFCTYVVNLNDINIKNNSNN 62 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCC-----------------------SCEEEEEEEETTC---------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccc-----------------------cceeEEEEEEecCccccccccc
Confidence 56999999999999999999999977665554443 33333333333222
Q ss_pred -----------------------------EEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725 84 -----------------------------TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134 (355)
Q Consensus 84 -----------------------------~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 134 (355)
...+.+|||||++.+...+..+++.+|++++|||++++.+++.+..|+..+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i 142 (208)
T 3clv_A 63 EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQL 142 (208)
T ss_dssp ----------------------CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 278999999999998888888888888888888888877777666665554
No 66
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.94 E-value=4.7e-26 Score=189.32 Aligned_cols=103 Identities=44% Similarity=0.813 Sum_probs=73.4
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec-CcEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-DRTVRLQ 88 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~ 88 (355)
..+.+||+++|++|||||||++++++..+... +.++++.++....+.++ +....+.
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQ-----------------------YKATIGADFLTKEVTVDGDKVATMQ 61 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTT-----------------------C---CCCSCEEEEECCSSSCCEEEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcc-----------------------cCCccceEEEEEEEEEcCCcEEEEE
Confidence 34679999999999999999999999554433 44555666666666666 5567899
Q ss_pred EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
+|||||++.+...+..+++.+|++++|||++++.+++.+..|+..+.
T Consensus 62 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 108 (182)
T 1ky3_A 62 VWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFL 108 (182)
T ss_dssp EECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred EEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988888877764
No 67
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.94 E-value=1.3e-26 Score=198.70 Aligned_cols=168 Identities=34% Similarity=0.603 Sum_probs=134.4
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCc-------
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR------- 83 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~------- 83 (355)
.+.+||+++|++|||||||+++|++..+... +.+|++.++....+.+++.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~-----------------------~~~t~~~~~~~~~~~~~~~~~~~~~~ 79 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPK-----------------------FITTVGIDFREKRVVYNAQGPNGSSG 79 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCE-----------------------EEEEEEEEEEEEEEEEEC-------C
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcC-----------------------CCCceeEEEEEEEEEECCcccccccc
Confidence 4579999999999999999999998655433 3455566666666666655
Q ss_pred ---EEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccccccc
Q psy15725 84 ---TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFH 160 (355)
Q Consensus 84 ---~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
...+.+|||||++.|...+..+++.+|++++|||++++.+++.+..|+..+....
T Consensus 80 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~---------------------- 137 (217)
T 2f7s_A 80 KAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA---------------------- 137 (217)
T ss_dssp CEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCC----------------------
T ss_pred CceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc----------------------
Confidence 7889999999999999999999999999999999999999988888866542100
Q ss_pred ccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCc
Q psy15725 161 HANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQ 240 (355)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~ 240 (355)
.
T Consensus 138 ------------------~------------------------------------------------------------- 138 (217)
T 2f7s_A 138 ------------------Y------------------------------------------------------------- 138 (217)
T ss_dssp ------------------T-------------------------------------------------------------
T ss_pred ------------------C-------------------------------------------------------------
Confidence 0
Q ss_pred ccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEE
Q psy15725 241 ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF 320 (355)
Q Consensus 241 ~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~ 320 (355)
..++|+++|+||+|+.+.+.+...+...+++..++++
T Consensus 139 -------------------------------------------~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~ 175 (217)
T 2f7s_A 139 -------------------------------------------CENPDIVLIGNKADLPDQREVNERQARELADKYGIPY 175 (217)
T ss_dssp -------------------------------------------TTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCE
T ss_pred -------------------------------------------cCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcE
Confidence 0357788888888876656677777778888888999
Q ss_pred EEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 321 IETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 321 ~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
+++||++|.||+++|++|.+.+.+.
T Consensus 176 ~~~Sa~~g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 176 FETSAATGQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp EEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999988754
No 68
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=3.8e-26 Score=192.80 Aligned_cols=167 Identities=34% Similarity=0.499 Sum_probs=128.3
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
+.+.+||+++|++|||||||+++|+++.+...+ .+|++..+ ...+.+++....+.+
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-----------------------~~t~~~~~-~~~~~~~~~~~~~~l 80 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEY-----------------------DPTLESTY-RHQATIDDEVVSMEI 80 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCC-----------------------CTTCCEEE-EEEEEETTEEEEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCccc-----------------------CCCCCceE-EEEEEECCEEEEEEE
Confidence 356799999999999999999999996554443 34444333 344566777889999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS 169 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (355)
|||||++. ...+..+++.+|++++|||++++++|+.+..|+..+....
T Consensus 81 ~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~------------------------------- 128 (196)
T 2atv_A 81 LDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIK------------------------------- 128 (196)
T ss_dssp EECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-------------------------------
T ss_pred EECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhh-------------------------------
Confidence 99999987 6677778888899999999888888887777766553210
Q ss_pred cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725 170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS 249 (355)
Q Consensus 170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~ 249 (355)
T Consensus 129 -------------------------------------------------------------------------------- 128 (196)
T 2atv_A 129 -------------------------------------------------------------------------------- 128 (196)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCC
Q psy15725 250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 329 (355)
Q Consensus 250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~ 329 (355)
...++|+++|+||+|+.+.+.+...++..+++..+++++++||++|.
T Consensus 129 ---------------------------------~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~ 175 (196)
T 2atv_A 129 ---------------------------------KPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGE 175 (196)
T ss_dssp ---------------------------------TTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCT
T ss_pred ---------------------------------CCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCC
Confidence 01356777777777776556666777777787788999999999999
Q ss_pred -CHHHHHHHHHHHcCCC
Q psy15725 330 -NVKQLFRRVAAALPGM 345 (355)
Q Consensus 330 -gv~~l~~~l~~~i~~~ 345 (355)
||+++|++|.+.+.+.
T Consensus 176 ~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 176 GNITEIFYELCREVRRR 192 (196)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhh
Confidence 9999999999988654
No 69
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.94 E-value=3.2e-26 Score=196.98 Aligned_cols=109 Identities=28% Similarity=0.642 Sum_probs=93.3
Q ss_pred CCCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcE
Q psy15725 5 GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 84 (355)
Q Consensus 5 ~~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 84 (355)
+....+.+.+||+++|++|||||||+++|+.+. +...+.++.+.++.......++..
T Consensus 7 ~~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~-----------------------~~~~~~~t~~~~~~~~~~~~~~~~ 63 (221)
T 3gj0_A 7 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGE-----------------------FEKKYVATLGVEVHPLVFHTNRGP 63 (221)
T ss_dssp CSTTCCCCEEEEEEEECTTSSHHHHHTTBHHHH-----------------------HTCEEETTTTEEEEEEEEEETTEE
T ss_pred ccCCCcccceEEEEECCCCCCHHHHHHHHHcCC-----------------------CCCCCCCccceeEEEEEEEECCEE
Confidence 345566788999999999999999999988743 334456677788888888888889
Q ss_pred EEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725 85 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT 136 (355)
Q Consensus 85 ~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~ 136 (355)
+.+.+|||||++.+..++..+++.+|++++|||++++.+|+.+..|+..+..
T Consensus 64 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~ 115 (221)
T 3gj0_A 64 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR 115 (221)
T ss_dssp EEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred EEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988888887754
No 70
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.94 E-value=8.1e-26 Score=192.24 Aligned_cols=177 Identities=25% Similarity=0.484 Sum_probs=134.8
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
....+||+++|++|||||||+++|.+..+... +.+|++..+ ...+.+++..+.+.+
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~-----------------------~~~t~~~~~-~~~~~~~~~~~~l~i 80 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPEN-----------------------YVPTVFENY-TASFEIDTQRIELSL 80 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSS-----------------------CCCCSEEEE-EEEEESSSSEEEEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCC-----------------------cCCccceeE-EEEEEECCEEEEEEE
Confidence 34679999999999999999999999655444 344444444 344566777889999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhhH-HHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (355)
|||||++.|..++..+++.+|++++|||++++.+|+.+ ..|+..+...
T Consensus 81 ~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~------------------------------- 129 (205)
T 1gwn_A 81 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF------------------------------- 129 (205)
T ss_dssp EEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-------------------------------
T ss_pred EeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH-------------------------------
Confidence 99999999999999999999999999999999999998 7898888643
Q ss_pred ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP 248 (355)
Q Consensus 169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~ 248 (355)
..++|+++|+||+|+.+...
T Consensus 130 -----------~~~~piilv~nK~Dl~~~~~------------------------------------------------- 149 (205)
T 1gwn_A 130 -----------CPNTKMLLVGCKSDLRTDVS------------------------------------------------- 149 (205)
T ss_dssp -----------CTTCEEEEEEECGGGGGCHH-------------------------------------------------
T ss_pred -----------CCCCCEEEEEechhhccchh-------------------------------------------------
Confidence 13789999999999742100
Q ss_pred ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC-cEEEEecCC-
Q psy15725 249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAK- 326 (355)
Q Consensus 249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~SA~- 326 (355)
. ...+... ..+.+..+++..+++..+ +++++|||+
T Consensus 150 ----------------------~----~~~~~~~-----------------~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 186 (205)
T 1gwn_A 150 ----------------------T----LVELSNH-----------------RQTPVSYDQGANMAKQIGAATYIECSALQ 186 (205)
T ss_dssp ----------------------H----HHHHHTT-----------------TCCCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred ----------------------h----hhhhccc-----------------ccCCCCHHHHHHHHHHcCCCEEEEeeecc
Confidence 0 0011110 124456667777877776 699999999
Q ss_pred CCCCHHHHHHHHHHHcCC
Q psy15725 327 AGYNVKQLFRRVAAALPG 344 (355)
Q Consensus 327 ~~~gv~~l~~~l~~~i~~ 344 (355)
+|.||+++|++|.+.+.+
T Consensus 187 ~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 187 SENSVRDIFHVATLACVN 204 (205)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhh
Confidence 689999999999988753
No 71
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=2.1e-25 Score=190.56 Aligned_cols=102 Identities=40% Similarity=0.803 Sum_probs=81.6
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+.+||+|+|++|||||||+++|++..+.. .+.++++.++....+.+++..+.+.+|
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~ 74 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNP-----------------------SFITTIGIDFKIKTVDINGKKVKLQLW 74 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCC-----------------------SSSCCCSCCEEEEEEEETTEEEEEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCc-----------------------ccCCcccceEEEEEEEECCEEEEEEEE
Confidence 456999999999999999999999855433 344556667777777778888899999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
||||++.+...+..+++.+|++++|||++++.+|+.+..|+..+.
T Consensus 75 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~ 119 (213)
T 3cph_A 75 DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVN 119 (213)
T ss_dssp CCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred eCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999998888888888888888888888777777666665543
No 72
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.94 E-value=5.3e-26 Score=190.26 Aligned_cols=101 Identities=29% Similarity=0.557 Sum_probs=79.3
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+.+||+++|++|||||||+++|++..+...+ .++.+ +.....+.+++..+.+.+|
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----------------------~~t~~-~~~~~~~~~~~~~~~~~i~ 57 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEY-----------------------DPTIE-DSYRKQVVIDGETCLLDIL 57 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCC-----------------------CTTCC-EEEEEEEEETTEEEEEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCC-----------------------CCCch-heEEEEEEECCcEEEEEEE
Confidence 36799999999999999999999986544433 33333 3444556677888899999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
||||++.+..++..+++.+|++++|||++++.+|+.+..|+..+.
T Consensus 58 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~ 102 (189)
T 4dsu_A 58 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 102 (189)
T ss_dssp ECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred ECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888888877776654
No 73
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=3.1e-25 Score=188.85 Aligned_cols=179 Identities=28% Similarity=0.496 Sum_probs=134.4
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
..++||+++|++|||||||+++|.+..+...+ .++++..+.. .+..++..+.+.+|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-----------------------~~t~~~~~~~-~~~~~~~~~~~~i~ 78 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVY-----------------------VPTVFENYVA-DIEVDGKQVELALW 78 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC------------------------------CCEEEE-EEEETTEEEEEEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcC-----------------------CCcccceEEE-EEEECCEEEEEEEE
Confidence 46789999999999999999999996654443 3444444433 35567778899999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhH-HHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS 169 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (355)
||||++.+...+..+++.+|++++|||++++.+|+.+ ..|+..+...
T Consensus 79 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------------------- 126 (207)
T 2fv8_A 79 DTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHF-------------------------------- 126 (207)
T ss_dssp ECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHH--------------------------------
T ss_pred ECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--------------------------------
Confidence 9999999999999999999999999999999999988 6788887643
Q ss_pred cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725 170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS 249 (355)
Q Consensus 170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~ 249 (355)
..++|+++|+||+|+.+..
T Consensus 127 ----------~~~~piilv~nK~Dl~~~~--------------------------------------------------- 145 (207)
T 2fv8_A 127 ----------CPNVPIILVANKKDLRSDE--------------------------------------------------- 145 (207)
T ss_dssp ----------STTCCEEEEEECGGGGGCH---------------------------------------------------
T ss_pred ----------CCCCCEEEEEEchhhhccc---------------------------------------------------
Confidence 1378999999999974311
Q ss_pred cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCC
Q psy15725 250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAG 328 (355)
Q Consensus 250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~ 328 (355)
.. .+.+... ..+.+..+++..+++..++ +++++||++|
T Consensus 146 ---------------------~~---~~~~~~~-----------------~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g 184 (207)
T 2fv8_A 146 ---------------------HV---RTELARM-----------------KQEPVRTDDGRAMAVRIQAYDYLECSAKTK 184 (207)
T ss_dssp ---------------------HH---HHHHHHT-----------------TCCCCCHHHHHHHHHHTTCSEEEECCTTTC
T ss_pred ---------------------cc---hhhhhhc-----------------ccCCCCHHHHHHHHHhcCCCEEEEeeCCCC
Confidence 00 0011110 0133556677777877776 9999999999
Q ss_pred CCHHHHHHHHHHHcCCCCC
Q psy15725 329 YNVKQLFRRVAAALPGMDS 347 (355)
Q Consensus 329 ~gv~~l~~~l~~~i~~~~~ 347 (355)
.||+++|++|.+.+.+.+.
T Consensus 185 ~gi~el~~~l~~~i~~~~~ 203 (207)
T 2fv8_A 185 EGVREVFETATRAALQKRY 203 (207)
T ss_dssp TTHHHHHHHHHHHHHSCCC
T ss_pred CCHHHHHHHHHHHHHHHhh
Confidence 9999999999999886543
No 74
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.94 E-value=5.8e-26 Score=191.79 Aligned_cols=102 Identities=22% Similarity=0.369 Sum_probs=79.0
Q ss_pred CCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEE
Q psy15725 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRL 87 (355)
Q Consensus 8 ~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 87 (355)
+.+.+..||+|+|++|||||||+++|++..+... .+.+|++..... +++....+
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~----------------------~~~~t~~~~~~~----~~~~~~~~ 65 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK----------------------HITATVGYNVET----FEKGRVAF 65 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC--------------------------CCCCCSSEEEEE----EEETTEEE
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccc----------------------ccccccceeEEE----EEeCCEEE
Confidence 4566789999999999999999999999654440 234455533322 23456789
Q ss_pred EEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
.+|||||++.+..++..+++.+|++|+|||++++++|..+..|+..+.
T Consensus 66 ~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~ 113 (199)
T 4bas_A 66 TVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAML 113 (199)
T ss_dssp EEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHH
T ss_pred EEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988877764
No 75
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.94 E-value=3.5e-25 Score=188.28 Aligned_cols=103 Identities=43% Similarity=0.798 Sum_probs=87.3
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
..+.+||+++|++|||||||+++|++..+. ..+.++++.++....+.+++..+.+.+
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~-----------------------~~~~~t~~~~~~~~~~~~~~~~~~~~l 61 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFS-----------------------NQYKATIGADFLTKEVMVDDRLVTMQI 61 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCC-----------------------SSCCCCCSEEEEEEEEESSSCEEEEEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCC-----------------------CCCCCcccceEEEEEEEECCEEEEEEE
Confidence 346799999999999999999999995543 334556677777777778888889999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
|||||++.+..++..+++.+|++++|||++++.+|+.+..|+..+.
T Consensus 62 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 107 (207)
T 1vg8_A 62 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL 107 (207)
T ss_dssp EEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred EeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988888877764
No 76
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.94 E-value=3.5e-25 Score=187.67 Aligned_cols=175 Identities=30% Similarity=0.510 Sum_probs=134.5
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
...+||+++|++|||||||+++|.+..+...+ .+|++.++.. .+.+++..+.+.+|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-----------------------~~t~~~~~~~-~~~~~~~~~~l~i~ 78 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVY-----------------------VPTVFENYIA-DIEVDGKQVELALW 78 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSC-----------------------CCSSCCCCEE-EEEETTEEEEEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCccc-----------------------CCcccceEEE-EEEECCEEEEEEEE
Confidence 45799999999999999999999996654443 3344444432 34567778899999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhH-HHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS 169 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (355)
||||++.+..++..+++.+|++++|||++++.+|+.+ ..|+..+...
T Consensus 79 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------------------- 126 (201)
T 2gco_A 79 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-------------------------------- 126 (201)
T ss_dssp CCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--------------------------------
T ss_pred ECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--------------------------------
Confidence 9999999999999999999999999999999999988 6788877643
Q ss_pred cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725 170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS 249 (355)
Q Consensus 170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~ 249 (355)
..++|+++|+||+|+.....
T Consensus 127 ----------~~~~piilv~nK~Dl~~~~~-------------------------------------------------- 146 (201)
T 2gco_A 127 ----------CPNVPIILVGNKKDLRQDEH-------------------------------------------------- 146 (201)
T ss_dssp ----------STTCCEEEEEECGGGTTCHH--------------------------------------------------
T ss_pred ----------CCCCCEEEEEecHHhhcCcc--------------------------------------------------
Confidence 13789999999999743110
Q ss_pred cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCC
Q psy15725 250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAG 328 (355)
Q Consensus 250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~ 328 (355)
..+.+... ..+.+..+++..+++..++ +++++||++|
T Consensus 147 -------------------------~~~~~~~~-----------------~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g 184 (201)
T 2gco_A 147 -------------------------TRRELAKM-----------------KQEPVRSEEGRDMANRISAFGYLECSAKTK 184 (201)
T ss_dssp -------------------------HHHHHHTT-----------------TCCCCCHHHHHHHHHHTTCSEEEECCTTTC
T ss_pred -------------------------chhhhccc-----------------ccCcCCHHHHHHHHHhCCCcEEEEeeCCCC
Confidence 00011110 1234556677778888787 9999999999
Q ss_pred CCHHHHHHHHHHHcC
Q psy15725 329 YNVKQLFRRVAAALP 343 (355)
Q Consensus 329 ~gv~~l~~~l~~~i~ 343 (355)
.||+++|++|.+.+.
T Consensus 185 ~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 185 EGVREVFEMATRAGL 199 (201)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998764
No 77
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.93 E-value=3e-25 Score=186.76 Aligned_cols=168 Identities=31% Similarity=0.437 Sum_probs=123.4
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+.+||+++|++|||||||+++|.+... .+... .++++.++....+.+++..+.+.+||
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~---------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~D 62 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHD---------------------SMDSD-XEVLGEDTYERTLMVDGESATIILLD 62 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSC---------------------CC-----GGGCTTEEEEEEEETTEEEEEEEEC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcC---------------------CcCcc-ccccceeEEEEEEEECCeEEEEEEEE
Confidence 469999999999999999999997331 11221 23345566667777888888999999
Q ss_pred cCCccc-ccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 92 TAGQER-FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 92 ~~g~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
|+|+.. +..++..+++.+|++++|||++++++|+.+..|+..+....
T Consensus 63 t~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~-------------------------------- 110 (192)
T 2cjw_A 63 MWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR-------------------------------- 110 (192)
T ss_dssp CCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT--------------------------------
T ss_pred eccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--------------------------------
Confidence 999876 45566677778888888888888888877776655443210
Q ss_pred ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725 171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY 250 (355)
Q Consensus 171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~ 250 (355)
T Consensus 111 -------------------------------------------------------------------------------- 110 (192)
T 2cjw_A 111 -------------------------------------------------------------------------------- 110 (192)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCC
Q psy15725 251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 330 (355)
Q Consensus 251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~g 330 (355)
...++|+++|+||+|+...+.+...++..++...++++++|||++|.|
T Consensus 111 --------------------------------~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~ 158 (192)
T 2cjw_A 111 --------------------------------QTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHN 158 (192)
T ss_dssp --------------------------------TTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBS
T ss_pred --------------------------------CCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCC
Confidence 013577788888888765566666666677777788999999999999
Q ss_pred HHHHHHHHHHHcCCC
Q psy15725 331 VKQLFRRVAAALPGM 345 (355)
Q Consensus 331 v~~l~~~l~~~i~~~ 345 (355)
|+++|++|.+.+...
T Consensus 159 v~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 159 VKELFEGIVRQVRLR 173 (192)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988543
No 78
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.93 E-value=4e-26 Score=194.10 Aligned_cols=171 Identities=27% Similarity=0.476 Sum_probs=102.5
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCc--EEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR--TVRLQ 88 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~~~ 88 (355)
.+.+||+++|++|||||||+++|.+.. ..+...+.+|++.++....+.+++. .+.+.
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~---------------------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 76 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKG---------------------SKFLKDYAMTSGVEVVVAPVTIPDTTVSVELF 76 (208)
T ss_dssp EEEEEEEEC-------------------------------------------------------CEEEECTTSSEEEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCC---------------------CcccCCCCCccceEEEEEEEEECCcccEEEEE
Confidence 356999999999999999999999851 0233344566666677777777776 88999
Q ss_pred EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725 89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168 (355)
Q Consensus 89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (355)
+|||||++.+...+..+++.+|++++|||++++.+|+.+..|+..+.....
T Consensus 77 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----------------------------- 127 (208)
T 2yc2_C 77 LLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARP----------------------------- 127 (208)
T ss_dssp EEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCS-----------------------------
T ss_pred EEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhc-----------------------------
Confidence 999999999988888889999999999999998888888888777653200
Q ss_pred ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP 248 (355)
Q Consensus 169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~ 248 (355)
T Consensus 128 -------------------------------------------------------------------------------- 127 (208)
T 2yc2_C 128 -------------------------------------------------------------------------------- 127 (208)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCC-cccCCHHHHHHHHhhcCcEEEEecCCC
Q psy15725 249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD-KRQVSTEEGERKAKELNVMFIETSAKA 327 (355)
Q Consensus 249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~SA~~ 327 (355)
....++|+++|+||+|+.+ .+.+..+++..+++..+++++++||++
T Consensus 128 ---------------------------------~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 174 (208)
T 2yc2_C 128 ---------------------------------DRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANP 174 (208)
T ss_dssp ---------------------------------CTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC--
T ss_pred ---------------------------------ccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCC
Confidence 0014678888888888766 566777788888888889999999999
Q ss_pred -CCCHHHHHHHHHHHcCC
Q psy15725 328 -GYNVKQLFRRVAAALPG 344 (355)
Q Consensus 328 -~~gv~~l~~~l~~~i~~ 344 (355)
|.||+++|++|.+.+.+
T Consensus 175 ~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 175 PGKDADAPFLSIATTFYR 192 (208)
T ss_dssp -----CHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHH
Confidence 99999999999998764
No 79
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.93 E-value=3.4e-25 Score=185.79 Aligned_cols=171 Identities=30% Similarity=0.501 Sum_probs=120.1
Q ss_pred CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ 88 (355)
Q Consensus 9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 88 (355)
++.+.+||+++|++|||||||+++|+++.+... +.++.+.. ....+..++..+.+.
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-----------------------~~~t~~~~-~~~~~~~~~~~~~~~ 72 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDE-----------------------YDPTIEDS-YRKQVVIDGETCLLD 72 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSC-----------------------CCTTCCEE-EEEEEEETTEEEEEE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccc-----------------------cCCccceE-EEEEEEECCEEEEEE
Confidence 456789999999999999999999998654333 23333322 234555677778899
Q ss_pred EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725 89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168 (355)
Q Consensus 89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (355)
+|||||++++...+..+++.+|++++|||++++.+++.+..|+..+....
T Consensus 73 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~------------------------------ 122 (190)
T 3con_A 73 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVK------------------------------ 122 (190)
T ss_dssp EEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH------------------------------
T ss_pred EEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHh------------------------------
Confidence 99999999999999889999999999999999888888777766653210
Q ss_pred ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP 248 (355)
Q Consensus 169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~ 248 (355)
T Consensus 123 -------------------------------------------------------------------------------- 122 (190)
T 3con_A 123 -------------------------------------------------------------------------------- 122 (190)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCC
Q psy15725 249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 328 (355)
Q Consensus 249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~ 328 (355)
...++|+++|+||+|+.+ +.+..++...+++..+++++++||++|
T Consensus 123 ----------------------------------~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 167 (190)
T 3con_A 123 ----------------------------------DSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTR 167 (190)
T ss_dssp ----------------------------------TCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTC
T ss_pred ----------------------------------CCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 003567777777777754 445566677777777889999999999
Q ss_pred CCHHHHHHHHHHHcCCCCCC
Q psy15725 329 YNVKQLFRRVAAALPGMDST 348 (355)
Q Consensus 329 ~gv~~l~~~l~~~i~~~~~~ 348 (355)
.|++++|++|.+.+.+.+.+
T Consensus 168 ~gi~~l~~~l~~~~~~~~~~ 187 (190)
T 3con_A 168 QGVEDAFYTLVREIRQYRMK 187 (190)
T ss_dssp TTHHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 99999999999998765443
No 80
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=2.5e-25 Score=187.91 Aligned_cols=170 Identities=30% Similarity=0.490 Sum_probs=130.1
Q ss_pred CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ 88 (355)
Q Consensus 9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 88 (355)
+..+.+||+++|++|||||||+++|+++.+...+ .++++..+ ......++....+.
T Consensus 4 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-----------------------~~t~~~~~-~~~~~~~~~~~~~~ 59 (199)
T 2gf0_A 4 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTY-----------------------IPTIEDTY-RQVISCDKSVCTLQ 59 (199)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTT-----------------------SCCCCEEE-EEEEEETTEEEEEE
T ss_pred cCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcc-----------------------cCccccce-eEEEEECCEEEEEE
Confidence 3456799999999999999999999996554433 33444332 33445677788999
Q ss_pred EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725 89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168 (355)
Q Consensus 89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (355)
+|||||++.+..++..+++.+|++++|||++++.+|+.+..|+..+.....
T Consensus 60 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----------------------------- 110 (199)
T 2gf0_A 60 ITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKG----------------------------- 110 (199)
T ss_dssp EEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHS-----------------------------
T ss_pred EEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhc-----------------------------
Confidence 999999999999998899999999999999998888887777665532200
Q ss_pred ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP 248 (355)
Q Consensus 169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~ 248 (355)
T Consensus 111 -------------------------------------------------------------------------------- 110 (199)
T 2gf0_A 111 -------------------------------------------------------------------------------- 110 (199)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCC
Q psy15725 249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 328 (355)
Q Consensus 249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~ 328 (355)
. ..++|+++|+||+|+.. +.+...++..+++..+++++++||++|
T Consensus 111 ---------------------------------~-~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (199)
T 2gf0_A 111 ---------------------------------S-VEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMN 155 (199)
T ss_dssp ---------------------------------C-GGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred ---------------------------------C-CCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCC
Confidence 0 02467777777777653 445566666777777889999999999
Q ss_pred CCHHHHHHHHHHHcCCCC
Q psy15725 329 YNVKQLFRRVAAALPGMD 346 (355)
Q Consensus 329 ~gv~~l~~~l~~~i~~~~ 346 (355)
.||+++|++|.+.+..++
T Consensus 156 ~gi~~l~~~l~~~~~~~~ 173 (199)
T 2gf0_A 156 YNVKELFQELLTLETRRN 173 (199)
T ss_dssp BSHHHHHHHHHHHCSSSC
T ss_pred CCHHHHHHHHHHHHhhhh
Confidence 999999999999997664
No 81
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.93 E-value=4.6e-26 Score=189.55 Aligned_cols=174 Identities=32% Similarity=0.511 Sum_probs=122.2
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+.+||+++|++|||||||++++..+.+...+.|++ +..+ ...+..++..+.+.+|
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~-----------------------~~~~-~~~~~~~~~~~~~~i~ 61 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-----------------------FDNF-SANVVVNGATVNLGLW 61 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC---------------------------------C-BCCCC-------CEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCee-----------------------eeeE-EEEEEECCEEEEEEEE
Confidence 456999999999999999999999976655544433 3222 1223345666788999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS 169 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (355)
||||++++...+..+++.+|++++|||++++.+|+.+. .|+..+...
T Consensus 62 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------------------- 109 (182)
T 3bwd_D 62 DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY-------------------------------- 109 (182)
T ss_dssp CCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--------------------------------
T ss_pred ECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--------------------------------
Confidence 99999999999999999999999999999999999987 698887643
Q ss_pred cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725 170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS 249 (355)
Q Consensus 170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~ 249 (355)
..++|+++|+||+|+.+.+...
T Consensus 110 ----------~~~~piilv~nK~Dl~~~~~~~------------------------------------------------ 131 (182)
T 3bwd_D 110 ----------APGVPIVLVGTKLDLRDDKQFF------------------------------------------------ 131 (182)
T ss_dssp ----------CTTCCEEEEEECHHHHTCHHHH------------------------------------------------
T ss_pred ----------CCCCCEEEEEechhhhcCcccc------------------------------------------------
Confidence 1278999999999973311000
Q ss_pred cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCC
Q psy15725 250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAG 328 (355)
Q Consensus 250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~ 328 (355)
... .....+..+++..+++..++ +++++||++|
T Consensus 132 ------------------------------~~~----------------~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (182)
T 3bwd_D 132 ------------------------------IDH----------------PGAVPITTVQGEELKKLIGAPAYIECSSKSQ 165 (182)
T ss_dssp ------------------------------HHC------------------CCCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred ------------------------------ccc----------------ccCCCCCHHHHHHHHHHcCCCEEEEEECCCC
Confidence 000 00233455666777777776 9999999999
Q ss_pred CCHHHHHHHHHHHcCC
Q psy15725 329 YNVKQLFRRVAAALPG 344 (355)
Q Consensus 329 ~gv~~l~~~l~~~i~~ 344 (355)
.||+++|++|.+.+..
T Consensus 166 ~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 166 ENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp TTHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999998865
No 82
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.93 E-value=3.2e-25 Score=188.38 Aligned_cols=176 Identities=28% Similarity=0.495 Sum_probs=132.8
Q ss_pred CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ 88 (355)
Q Consensus 9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 88 (355)
...+.+||+++|++|||||||+++|+.+.+...+. ++++ +.....+.+++..+.+.
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~-----------------------~t~~-~~~~~~~~~~~~~~~l~ 81 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYI-----------------------PTVF-DNYSANVMVDGKPVNLG 81 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CC-----------------------CCSE-EEEEEEEECC-CEEEEE
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcC-----------------------Ceec-ceeEEEEEECCEEEEEE
Confidence 34678999999999999999999999966544433 3333 33445556777888999
Q ss_pred EEecCCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCcccc
Q psy15725 89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ 167 (355)
Q Consensus 89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (355)
+|||||++.+...+..+++.+|++++|||++++.+|+.+. .|+..+....
T Consensus 82 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----------------------------- 132 (204)
T 4gzl_A 82 LWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC----------------------------- 132 (204)
T ss_dssp EEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-----------------------------
T ss_pred EEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----------------------------
Confidence 9999999999999999999999999999999999999986 7888886531
Q ss_pred CccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccc
Q psy15725 168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLI 247 (355)
Q Consensus 168 ~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~ 247 (355)
.++|+++|+||+|+.+.+.
T Consensus 133 -------------~~~piilv~nK~Dl~~~~~------------------------------------------------ 151 (204)
T 4gzl_A 133 -------------PNTPIILVGTKLDLRDDKD------------------------------------------------ 151 (204)
T ss_dssp -------------SSCCEEEEEECHHHHTCHH------------------------------------------------
T ss_pred -------------CCCCEEEEEechhhccchh------------------------------------------------
Confidence 3789999999999743110
Q ss_pred cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCC
Q psy15725 248 PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAK 326 (355)
Q Consensus 248 ~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~ 326 (355)
..+.+... ..+.+...++..+++..++ +++++||+
T Consensus 152 ---------------------------~~~~~~~~-----------------~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 187 (204)
T 4gzl_A 152 ---------------------------TIEKLKEK-----------------KLTPITYPQGLAMAKEIGAVKYLECSAL 187 (204)
T ss_dssp ---------------------------HHHHHHHT-----------------TCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred ---------------------------hhhhhhcc-----------------ccccccHHHHHHHHHhcCCcEEEEeeCC
Confidence 00001110 1234556677788888775 79999999
Q ss_pred CCCCHHHHHHHHHHHc
Q psy15725 327 AGYNVKQLFRRVAAAL 342 (355)
Q Consensus 327 ~~~gv~~l~~~l~~~i 342 (355)
+|.||+++|++|.+.+
T Consensus 188 ~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 188 TQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TCTTHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999999875
No 83
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.93 E-value=8.9e-25 Score=178.47 Aligned_cols=164 Identities=29% Similarity=0.509 Sum_probs=126.6
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+.+||+++|++|||||||++++.+..+...+ .++.+.. ....+..++..+.+.+||
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-----------------------~~~~~~~-~~~~~~~~~~~~~~~~~D 57 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEC-----------------------DPTIEDS-YRKQVVIDGETCLLDILD 57 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCC-----------------------CTTCCEE-EEEEEEETTEEEEEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCcccc-----------------------CCccceE-EEEEEEECCEEEEEEEEE
Confidence 4689999999999999999999986544433 3333322 234455667778899999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW 171 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (355)
|||++++...+..+++.+|++++|||++++.+++.+..|+..+....
T Consensus 58 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~--------------------------------- 104 (166)
T 2ce2_X 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK--------------------------------- 104 (166)
T ss_dssp CCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH---------------------------------
T ss_pred CCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---------------------------------
Confidence 99999988888888889999999999988888877777766553210
Q ss_pred cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725 172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI 251 (355)
Q Consensus 172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~ 251 (355)
T Consensus 105 -------------------------------------------------------------------------------- 104 (166)
T 2ce2_X 105 -------------------------------------------------------------------------------- 104 (166)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725 252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 331 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv 331 (355)
...++|+++|+||+|+.+ +.+...+...+++..+++++++||++|.|+
T Consensus 105 -------------------------------~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 152 (166)
T 2ce2_X 105 -------------------------------DSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGV 152 (166)
T ss_dssp -------------------------------TCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTH
T ss_pred -------------------------------CCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCH
Confidence 003567888888888754 445566677777777889999999999999
Q ss_pred HHHHHHHHHHcCC
Q psy15725 332 KQLFRRVAAALPG 344 (355)
Q Consensus 332 ~~l~~~l~~~i~~ 344 (355)
+++|++|.+.+.+
T Consensus 153 ~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 153 EDAFYTLVREIRQ 165 (166)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998754
No 84
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.93 E-value=2.1e-25 Score=182.41 Aligned_cols=94 Identities=19% Similarity=0.456 Sum_probs=75.4
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|++|||||||++++.++.+.. +.||++... .. ++.....+.+||||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~------------------------~~~t~~~~~--~~--~~~~~~~~~i~Dt~ 52 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT------------------------TIPTIGFNV--ET--VEYKNISFTVWDVG 52 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC------------------------CCCCSSCCE--EE--EECSSCEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc------------------------ccCcCceeE--EE--EEECCEEEEEEEcC
Confidence 589999999999999999999865432 133444222 22 22344789999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
|++.+...+..+++.+|++++|||++++++|+.+..|+..+.
T Consensus 53 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 94 (164)
T 1r8s_A 53 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML 94 (164)
T ss_dssp CCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998888877764
No 85
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.92 E-value=3.8e-25 Score=185.37 Aligned_cols=98 Identities=23% Similarity=0.476 Sum_probs=79.7
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+.+||+|+|++|||||||+++|+++.+... +.+|++.++.. ++.....+.+|
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------------~~~t~~~~~~~----~~~~~~~~~l~ 72 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNED-----------------------MIPTVGFNMRK----ITKGNVTIKLW 72 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCS-----------------------CCCCCSEEEEE----EEETTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCc-----------------------cCCCCceeEEE----EEeCCEEEEEE
Confidence 4579999999999999999999999655433 34455554432 22345789999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
||||++++...+..+++.+|++++|||++++++|+.+..|+..+.
T Consensus 73 Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~ 117 (188)
T 1zd9_A 73 DIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLL 117 (188)
T ss_dssp EECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHH
T ss_pred ECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998888877764
No 86
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.92 E-value=2.6e-24 Score=181.92 Aligned_cols=98 Identities=20% Similarity=0.310 Sum_probs=73.4
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+.+||+++|++|||||||++++.++.+.. +.||++... ..+.+++ ..+.+|
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~------------------------~~~t~~~~~--~~~~~~~--~~l~i~ 74 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ------------------------HVPTLHPTS--EELTIAG--MTFTTF 74 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------------------------------CCCCCSC--EEEEETT--EEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCc------------------------cCCCCCcee--EEEEECC--EEEEEE
Confidence 456899999999999999999998855421 223333332 2333444 789999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT 136 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~ 136 (355)
||||++.+..++..+++.+|++++|||++++++|+.+..|+.++..
T Consensus 75 Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~ 120 (198)
T 1f6b_A 75 DLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 120 (198)
T ss_dssp EECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHT
T ss_pred ECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999888753
No 87
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.92 E-value=1.6e-24 Score=178.32 Aligned_cols=96 Identities=20% Similarity=0.403 Sum_probs=77.1
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+.+||+++|++|||||||+++|.++.+.. +.||++... ..+.++ ...+.+||
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~------------------------~~~t~~~~~--~~~~~~--~~~~~~~D 57 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT------------------------TIPTIGFNV--ETVTYK--NLKFQVWD 57 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC------------------------CCCCSSEEE--EEEEET--TEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC------------------------cCCcCccce--EEEEEC--CEEEEEEE
Confidence 46899999999999999999999865422 234444332 223333 47899999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
|||++.+...+..+++.+|++++|||++++.+|.....|+..+.
T Consensus 58 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 101 (171)
T 1upt_A 58 LGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAML 101 (171)
T ss_dssp ECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHH
T ss_pred CCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888777664
No 88
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.92 E-value=7.9e-24 Score=177.73 Aligned_cols=98 Identities=22% Similarity=0.361 Sum_probs=78.1
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+.+||+++|++|||||||++++.++.+.. +.+|++.. ...+.+++ ..+.+|
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~------------------------~~~t~~~~--~~~~~~~~--~~~~i~ 72 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT------------------------LQPTWHPT--SEELAIGN--IKFTTF 72 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC------------------------CCCCCSCE--EEEEEETT--EEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc------------------------cccCCCCC--eEEEEECC--EEEEEE
Confidence 456899999999999999999999865432 23344433 23334444 789999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT 136 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~ 136 (355)
||||++.+..++..+++.+|++++|||++++++|+.+..|+..+..
T Consensus 73 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 118 (190)
T 1m2o_B 73 DLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFN 118 (190)
T ss_dssp ECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHT
T ss_pred ECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999888753
No 89
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.92 E-value=9.3e-25 Score=183.73 Aligned_cols=97 Identities=18% Similarity=0.451 Sum_probs=73.3
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+.+||+++|++|||||||++++..+.+.. +.||++... ..+.. ....+.+|
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~------------------------~~~t~~~~~--~~~~~--~~~~~~i~ 78 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT------------------------TIPTIGFNV--ETVEY--KNICFTVW 78 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE------------------------EEEETTEEE--EEEEE--TTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc------------------------cCCcCceeE--EEEEE--CCEEEEEE
Confidence 467999999999999999999998855421 234545332 22222 44789999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
||||++.+...+..+++.+|++++|||++++++|+.+..|+..+.
T Consensus 79 Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~ 123 (192)
T 2b6h_A 79 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKML 123 (192)
T ss_dssp ECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHH
T ss_pred ECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999888887764
No 90
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.92 E-value=1.2e-25 Score=190.28 Aligned_cols=157 Identities=41% Similarity=0.715 Sum_probs=126.6
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+.+||+++|++|||||||+++|++.. +...+.++++.++....+.+++..+.+.+|
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 87 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDT-----------------------YTESYISTIGVDFKIRTIELDGKTIKLQIW 87 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCC-----------------------CCCHHHHHHCCSEEEEEEEETTEEEEEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC-----------------------CCCCcCCcccceEEEEEEEECCEEEEEEEE
Confidence 457999999999999999999999844 344455667777778888888888999999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
||||++.+...+..+++.+|++++|||++++.+|+.+..|+..+...
T Consensus 88 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--------------------------------- 134 (199)
T 3l0i_B 88 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY--------------------------------- 134 (199)
T ss_dssp CCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSC---------------------------------
T ss_pred ECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh---------------------------------
Confidence 99999999999999999999999999999999999999999988643
Q ss_pred ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725 171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVR 231 (355)
Q Consensus 171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~ 231 (355)
...++|+++|+||+|+.+.+.+...+...++...+++++++|+.++.++++++
T Consensus 135 --------~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~ 187 (199)
T 3l0i_B 135 --------ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 187 (199)
T ss_dssp --------C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHH
T ss_pred --------ccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 12479999999999998877777788888889999999999999998887643
No 91
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=1.4e-24 Score=181.70 Aligned_cols=97 Identities=24% Similarity=0.450 Sum_probs=73.9
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+.+||+++|++|||||||+++|.++.+. . +.||++... ..+.++ ...+.+|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~-----------------------~~~t~~~~~--~~~~~~--~~~~~i~ 65 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-H-----------------------TSPTIGSNV--EEIVIN--NTRFLMW 65 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-E-----------------------EECCSCSSC--EEEEET--TEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-c-----------------------CcCCCccce--EEEEEC--CEEEEEE
Confidence 35799999999999999999999985543 2 234444332 222333 3789999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
||||++++...+..+++.+|++++|||++++++|+.+..|+..+.
T Consensus 66 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 110 (187)
T 1zj6_A 66 DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKML 110 (187)
T ss_dssp ECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHH
T ss_pred ECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888887764
No 92
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.92 E-value=9.8e-25 Score=181.80 Aligned_cols=98 Identities=22% Similarity=0.515 Sum_probs=78.0
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
+.+.+||+++|++|||||||++++.+..+. .+.||++... ..+.++ ...+.+
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~------------------------~~~~t~g~~~--~~~~~~--~~~l~i 64 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDIS------------------------HITPTQGFNI--KSVQSQ--GFKLNV 64 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCCE------------------------EEEEETTEEE--EEEEET--TEEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCCCC------------------------cccCcCCeEE--EEEEEC--CEEEEE
Confidence 346799999999999999999999885321 2345555432 233333 478999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
|||||++.+...+..+++.+|++++|||++++++|+.+..|+..+.
T Consensus 65 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~ 110 (181)
T 1fzq_A 65 WDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELL 110 (181)
T ss_dssp EECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHT
T ss_pred EECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998888877653
No 93
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.91 E-value=1.7e-23 Score=174.84 Aligned_cols=97 Identities=24% Similarity=0.481 Sum_probs=77.7
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+.+||+++|++|||||||++++.++. .. .+.||++... ..+.++ ...+.+|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~-----------------------~~~~t~~~~~--~~~~~~--~~~~~~~ 67 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VD-----------------------TISPTLGFNI--KTLEHR--GFKLNIW 67 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CS-----------------------SCCCCSSEEE--EEEEET--TEEEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CC-----------------------cccccCccce--EEEEEC--CEEEEEE
Confidence 467999999999999999999999854 22 2344545332 233333 4789999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
||||++++...+..+++.+|++++|||++++.+|+.+..|+..+.
T Consensus 68 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 112 (186)
T 1ksh_A 68 DVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLL 112 (186)
T ss_dssp EECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHH
T ss_pred ECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998888877764
No 94
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.91 E-value=7.1e-25 Score=183.13 Aligned_cols=103 Identities=27% Similarity=0.551 Sum_probs=73.5
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee---cCcEEEEEE
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL---EDRTVRLQL 89 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i 89 (355)
++||+++|++|||||||+++|.+.. ..+...+.+|++.++....+.+ ++..+.+.+
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~---------------------~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i 60 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTK---------------------KSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNV 60 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC--------------------------------CSEEEEEEEC---------CEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC---------------------CccCCCcceeccEEeEEeeeccccCCCCceEEEE
Confidence 5899999999999999999999842 1122334566677766655543 235678999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCc-chhhhHHHHHHHHhh
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNA-NSFHQTSKWIDDVRT 136 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~ 136 (355)
|||+|+++|..+++.+++.+|++++|||++++ .+|+.+..|+.++..
T Consensus 61 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~ 108 (184)
T 2zej_A 61 WDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKA 108 (184)
T ss_dssp EEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHH
T ss_pred EecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHh
Confidence 99999999999998889999999999999987 478888888777653
No 95
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.91 E-value=1.9e-23 Score=175.20 Aligned_cols=100 Identities=19% Similarity=0.356 Sum_probs=77.0
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
..+.+||+++|++|||||||+++|.+... +...+.+|++.. ...+.++ ...+.+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~----------------------~~~~~~~t~~~~--~~~~~~~--~~~~~l 71 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNA----------------------QSQNILPTIGFS--IEKFKSS--SLSFTV 71 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGG----------------------CCSSCCCCSSEE--EEEEECS--SCEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCC----------------------CCCCcCCcccee--EEEEEEC--CEEEEE
Confidence 45679999999999999999999998541 122234455533 3333333 368999
Q ss_pred EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
|||||++.+...+..+++.+|++++|||++++.+|+.+..|+..+.
T Consensus 72 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 117 (190)
T 2h57_A 72 FDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLL 117 (190)
T ss_dssp EEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988888877764
No 96
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.91 E-value=2.3e-24 Score=180.69 Aligned_cols=97 Identities=23% Similarity=0.427 Sum_probs=77.2
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+.+||+++|++|||||||++++..+.+.. +.||++.... .+..+ ...+.+|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~------------------------~~~t~~~~~~--~~~~~--~~~~~~~ 71 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT------------------------TVPTVGVNLE--TLQYK--NISFEVW 71 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE------------------------ECSSTTCCEE--EEEET--TEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC------------------------cCCCCceEEE--EEEEC--CEEEEEE
Confidence 357999999999999999999998754321 2344443322 22232 4789999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
||||++.+...+..+++.+|++++|||++++++|+.+..|+..+.
T Consensus 72 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 116 (189)
T 2x77_A 72 DLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALL 116 (189)
T ss_dssp EECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHH
T ss_pred ECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998888877764
No 97
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.91 E-value=5.4e-24 Score=179.57 Aligned_cols=102 Identities=17% Similarity=0.231 Sum_probs=70.8
Q ss_pred CCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeee--e-cCc
Q psy15725 7 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY--L-EDR 83 (355)
Q Consensus 7 ~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~--~-~~~ 83 (355)
..++.+.+||+++|++|||||||++++.+... . .++++.++...... + ++.
T Consensus 14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~-------------------------~~~~~~~~~~~~~~~~~~~~~ 67 (196)
T 3llu_A 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHKMS-P-------------------------NETLFLESTNKIYKDDISNSS 67 (196)
T ss_dssp ------CCEEEEEESTTSSHHHHHHHHHSCCC-G-------------------------GGGGGCCCCCSCEEEEECCTT
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHHhcCC-C-------------------------cceeeeccccceeeeeccCCC
Confidence 34556789999999999999999998776321 1 12333333333332 2 256
Q ss_pred EEEEEEEecCCcccccccc---cccccCccEEEEEEECCCc--chhhhHHHHHHHH
Q psy15725 84 TVRLQLWDTAGQERFRSLI---PSYIRDSTVAVVVYDITNA--NSFHQTSKWIDDV 134 (355)
Q Consensus 84 ~~~~~i~D~~g~~~~~~~~---~~~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~~ 134 (355)
.+.+.+|||+|++.|.... ..+++.+|++++|||++++ +++..+..|+.++
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~ 123 (196)
T 3llu_A 68 FVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKA 123 (196)
T ss_dssp SCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHH
T ss_pred eeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHH
Confidence 6789999999999988876 7999999999999999997 5555555665554
No 98
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.91 E-value=8.6e-23 Score=172.62 Aligned_cols=100 Identities=34% Similarity=0.800 Sum_probs=81.7
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
..+||+++|++|||||||++++.+..+.. .+.++++.++....+.+++..+.+.+||
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~-----------------------~~~~t~~~~~~~~~i~~~g~~~~~~i~D 60 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL-----------------------ESKSTIGVEFATRSIQVDGKTIKAQIWD 60 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC--------------------------CCCSCEEEEEEEEETTEEEEEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCC-----------------------CCCCccceeEEEEEEEECCEEEEEEEEE
Confidence 46899999999999999999999955433 3445666677777788888889999999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 134 (355)
++|++.+...+..+++.+|++++|||+.+..+|+.+..|+..+
T Consensus 61 t~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~ 103 (199)
T 2f9l_A 61 TAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKEL 103 (199)
T ss_dssp CSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred CCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 9999999888888888899999999998888887776676554
No 99
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.90 E-value=2.2e-22 Score=169.03 Aligned_cols=102 Identities=33% Similarity=0.777 Sum_probs=85.3
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
...++|+++|++|||||||++++.+..++. .+.+|++.++....+.+++..+.+.+|
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~-----------------------~~~~t~~~~~~~~~i~~~g~~~~~~i~ 83 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNL-----------------------ESKSTIGVEFATRSIQVDGKTIKAQIW 83 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCC-----------------------SCCCCCSEEEEEEEEEETTEEEEEEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCC-----------------------CCCCccceEEEEEEEEECCEEEEEEEE
Confidence 456999999999999999999999955433 345666777778888888888899999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
|++|++++...+..+++.++++++|||..+..+|+++..|+..+.
T Consensus 84 Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~ 128 (191)
T 1oix_A 84 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR 128 (191)
T ss_dssp EECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred ECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 999999998888888888999999999998888887777766553
No 100
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.90 E-value=8.4e-23 Score=186.29 Aligned_cols=176 Identities=28% Similarity=0.487 Sum_probs=135.4
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
..+||+++|++|||||||++++.++.+...+ .+|++. .....+.+++..+.+.+||
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~-----------------------~~t~~~-~~~~~~~~~~~~~~~~l~D 209 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEY-----------------------IPTVFD-NYSANVMVDGKPVNLGLWD 209 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSC-----------------------CCCSEE-EEEEEEEETTEEEEEEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCccc-----------------------CCcccc-eeEEEEEECCEEEEEEEEe
Confidence 3589999999999999999999986554443 334442 3344556778888999999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
|||++.+...+..+++.+|++++|||++++.+|+.+. .|+..+....
T Consensus 210 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------------------------- 257 (332)
T 2wkq_A 210 TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-------------------------------- 257 (332)
T ss_dssp ECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--------------------------------
T ss_pred CCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC--------------------------------
Confidence 9999999999999999999999999999999999886 7888876431
Q ss_pred ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725 171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY 250 (355)
Q Consensus 171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~ 250 (355)
.++|+++|+||+|+.+...
T Consensus 258 ----------~~~p~ilv~nK~Dl~~~~~--------------------------------------------------- 276 (332)
T 2wkq_A 258 ----------PNTPIILVGTKLDLRDDKD--------------------------------------------------- 276 (332)
T ss_dssp ----------TTSCEEEEEECHHHHTCHH---------------------------------------------------
T ss_pred ----------CCCcEEEEEEchhcccccc---------------------------------------------------
Confidence 2789999999999632110
Q ss_pred ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCCC
Q psy15725 251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGY 329 (355)
Q Consensus 251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~~ 329 (355)
..+.+... ..+.+...++..+++..++ ++++|||++|.
T Consensus 277 ------------------------~~~~~~~~-----------------~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 315 (332)
T 2wkq_A 277 ------------------------TIEKLKEK-----------------KLTPITYPQGLAMAKEIGAVKYLECSALTQR 315 (332)
T ss_dssp ------------------------HHHHHHHT-----------------TCCCCCHHHHHHHHHHTTCSEEEECCTTTCT
T ss_pred ------------------------hhhhcccc-----------------ccccccHHHHHHHHHHcCCcEEEEecCCCCc
Confidence 00011110 1244566777788888886 99999999999
Q ss_pred CHHHHHHHHHHHcCCC
Q psy15725 330 NVKQLFRRVAAALPGM 345 (355)
Q Consensus 330 gv~~l~~~l~~~i~~~ 345 (355)
||+++|++|.+.+..+
T Consensus 316 gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 316 GLKTVFDEAIRAVLCP 331 (332)
T ss_dssp THHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999988654
No 101
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.89 E-value=3.1e-23 Score=182.16 Aligned_cols=89 Identities=19% Similarity=0.257 Sum_probs=73.2
Q ss_pred CCcEEEEEEeCCCc--ccHHHHHHHHHHHHhh-cCCCceEEEEeeCCCCCCcccCCHHHHHHHHhh-cCcEEEEecCCCC
Q psy15725 253 DSTVAVVVYDITNA--NSFHQTSKWIDDVRTE-RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAG 328 (355)
Q Consensus 253 ~~~~vi~v~d~~~~--~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~SA~~~ 328 (355)
++|++++|||++++ .+++.+..|+..+... ...++|+++|+||+|+.+.+.+ .+...+++. .+++++++||++|
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g 239 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSN 239 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTT
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCC
Confidence 89999999999998 8999999999888664 2368999999999999655544 455566655 4789999999999
Q ss_pred CCHHHHHHHHHHHcC
Q psy15725 329 YNVKQLFRRVAAALP 343 (355)
Q Consensus 329 ~gv~~l~~~l~~~i~ 343 (355)
.||+++|++|.+.+.
T Consensus 240 ~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 240 VNVDLAFSTLVQLID 254 (255)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc
Confidence 999999999998764
No 102
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.89 E-value=5.5e-23 Score=175.74 Aligned_cols=123 Identities=18% Similarity=0.240 Sum_probs=86.9
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCc-EEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR-TVRLQ 88 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~ 88 (355)
..+.+||+++|++|||||||+++|+++.+...+.+ +..++.. +.+++. ...+.
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~------------------------~~~~~~~--~~~~~~~~~~~~ 57 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS------------------------ITDSSAI--YKVNNNRGNSLT 57 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC------------------------CSCEEEE--EECSSTTCCEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC------------------------cceeeEE--EEecCCCccEEE
Confidence 34679999999999999999999999665444322 1223222 334433 57899
Q ss_pred EEecCCcccccc-cccccccCccEEEEEEECCCcc-hhhhHHH-HHHHHhhhcCCceEEeeccccccccccccccccCcc
Q psy15725 89 LWDTAGQERFRS-LIPSYIRDSTVAVVVYDITNAN-SFHQTSK-WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165 (355)
Q Consensus 89 i~D~~g~~~~~~-~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (355)
+|||||++.+.. ++..+++.+|++++|||+++.. ++..... |...+....
T Consensus 58 i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 110 (214)
T 2fh5_B 58 LIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSM--------------------------- 110 (214)
T ss_dssp EEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHH---------------------------
T ss_pred EEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhh---------------------------
Confidence 999999999987 7888899999999999999853 4555444 544443210
Q ss_pred ccCccccccccccCCCccEEEEEeecCCCCcc
Q psy15725 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 197 (355)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 197 (355)
....++|+++|+||+|+...
T Consensus 111 ------------~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 111 ------------ALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp ------------TSTTCCEEEEEEECTTSTTC
T ss_pred ------------hcccCCCEEEEEECCCCCCc
Confidence 11247999999999998653
No 103
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.89 E-value=6.1e-23 Score=186.71 Aligned_cols=96 Identities=19% Similarity=0.458 Sum_probs=72.4
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+.+||+|+|++|||||||+++|.+..+... .||++..+.. ++.....+.+||
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~------------------------~pT~~~~~~~----~~~~~~~l~i~D 215 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT------------------------IPTIGFNVET----VEYKNISFTVWD 215 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE------------------------EEETTEEEEE----EEETTEEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc------------------------ccccceEEEE----EecCcEEEEEEE
Confidence 467999999999999999999988553221 2455544332 233457899999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
|||++.|..++..+++.+|++|+|||++++.+|..+..|+..+.
T Consensus 216 t~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~ 259 (329)
T 3o47_A 216 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML 259 (329)
T ss_dssp CC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHH
T ss_pred CCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998887766654
No 104
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.88 E-value=1.5e-22 Score=168.43 Aligned_cols=154 Identities=21% Similarity=0.311 Sum_probs=112.5
Q ss_pred CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ 88 (355)
Q Consensus 9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 88 (355)
...+.+||+++|++|||||||+++|.++.+ . .+.+|++... ..+.++ ...+.
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~-----------------------~~~~t~~~~~--~~~~~~--~~~~~ 68 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-V-----------------------HTSPTIGSNV--EEIVIN--NTRFL 68 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-E-----------------------EEECCSSSSC--EEEEET--TEEEE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-C-----------------------ccCCcCceee--EEEEEC--CEEEE
Confidence 345679999999999999999999998654 1 1234444332 223333 37899
Q ss_pred EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725 89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168 (355)
Q Consensus 89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (355)
+|||||++++...+..+++.+|++++|||++++++|+.+..|+..+...
T Consensus 69 i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~------------------------------- 117 (181)
T 2h17_A 69 MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH------------------------------- 117 (181)
T ss_dssp EEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTC-------------------------------
T ss_pred EEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhC-------------------------------
Confidence 9999999999999999999999999999999999999998888877532
Q ss_pred ccccccccccCCCccEEEEEeecCCCCcccc---eehhhhhhhhhccCeEEEEeeeeeccccceE
Q psy15725 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ---VSTEEGERKAKELNVMFIETSAKAGYNVKQV 230 (355)
Q Consensus 169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i 230 (355)
....++|+++|+||+|+.+... +............+.+++++|+.++.+++++
T Consensus 118 ---------~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 173 (181)
T 2h17_A 118 ---------EDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQG 173 (181)
T ss_dssp ---------GGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred ---------hhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHH
Confidence 1124799999999999965321 1111112222345678999999999887654
No 105
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.88 E-value=2.1e-22 Score=165.07 Aligned_cols=83 Identities=18% Similarity=0.209 Sum_probs=60.2
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725 254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333 (355)
Q Consensus 254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~ 333 (355)
++++++|+|+++. +....|+..+.+ .++|+++|+||+|+...+.+.. +...+++..+++++++||++|.||++
T Consensus 82 ~~~~i~v~D~~~~---~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~ 154 (165)
T 2wji_A 82 PDLVVNIVDATAL---ERNLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIEE 154 (165)
T ss_dssp CSEEEEEEETTCH---HHHHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHHH
T ss_pred CCEEEEEecCCch---hHhHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHHH
Confidence 5667777777653 233346555554 4788999999999754444432 34566667788999999999999999
Q ss_pred HHHHHHHHcC
Q psy15725 334 LFRRVAAALP 343 (355)
Q Consensus 334 l~~~l~~~i~ 343 (355)
+|++|.+.+.
T Consensus 155 l~~~l~~~~~ 164 (165)
T 2wji_A 155 LKKAISIAVK 164 (165)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhh
Confidence 9999998763
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.88 E-value=1.5e-22 Score=194.74 Aligned_cols=97 Identities=18% Similarity=0.426 Sum_probs=79.7
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+.+||+++|.+|||||||+++|++..+.. +.+|++..+.. ++.+.+.+.+|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~------------------------~~~T~~~~~~~----~~~~~~~~~l~ 371 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT------------------------TIPTVGFNVET----VTYKNVKFNVW 371 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC------------------------CCCCSSEEEEE----EESSSCEEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC------------------------cCCccceeEEE----EEeCCEEEEEE
Confidence 457999999999999999999999965322 23455544433 23345789999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
||+|++.|..++..+++.+|++|+|||++++.+|+.+..|+..+.
T Consensus 372 Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~ 416 (497)
T 3lvq_E 372 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRII 416 (497)
T ss_dssp EECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHH
T ss_pred ECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988877764
No 107
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.87 E-value=2.1e-21 Score=160.64 Aligned_cols=86 Identities=16% Similarity=0.251 Sum_probs=65.7
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+.++|+++|++|||||||+++|.+..+...+.+ +++.++....+.+++ ..+.+|
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~--~~~~l~ 60 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAG-----------------------GITQHIGAYQVTVND--KKITFL 60 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCC-----------------------SSSTTCCCCEEEETT--EEEEES
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCC-----------------------ceeEeeeEEEEEeCC--ceEEEE
Confidence 3568999999999999999999999665443322 222233333344444 467899
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCc
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 121 (355)
||||++.+...+..++..+|++++|||++++
T Consensus 61 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 91 (178)
T 2lkc_A 61 DTPGHEAFTTMRARGAQVTDIVILVVAADDG 91 (178)
T ss_dssp CCCSSSSSSCSCCSSCCCCCEEEEEEETTCC
T ss_pred ECCCCHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 9999999999999999999999999998874
No 108
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.79 E-value=3.7e-24 Score=181.68 Aligned_cols=159 Identities=30% Similarity=0.504 Sum_probs=126.0
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+.+||+++|++|||||||+++|.++.+...+.++ ++.. ....+..++..+.+.+|
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t-----------------------~~~~-~~~~~~~~~~~~~l~i~ 83 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT-----------------------VFDN-YSANVMVDGKPVNLGLW 83 (204)
Confidence 46799999999999999999999986655444333 2222 23334455667789999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS 169 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (355)
||||++++...+..+++.+|++++|||++++.+|+.+. .|+..+...
T Consensus 84 Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~-------------------------------- 131 (204)
T 3th5_A 84 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-------------------------------- 131 (204)
Confidence 99999999999999999999999999999999999886 787776532
Q ss_pred cccccccccCCCccEEEEEeecCCCCccc------------ceehhhhhhhhhccCe-EEEEeeeeeccccceEEEEEE
Q psy15725 170 KWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELNV-MFIETSAKAGYNVKQVRLQLW 235 (355)
Q Consensus 170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~------------~v~~~~~~~~~~~~~~-~~~~~sa~~~~~v~~i~~~i~ 235 (355)
..++|+++|+||+|+.+.. .+...+...++...+. +++++|+.++.+++.++..+.
T Consensus 132 ----------~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~ 200 (204)
T 3th5_A 132 ----------CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200 (204)
Confidence 1278999999999996543 4555666777777777 899999999999988776654
No 109
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.87 E-value=7.8e-22 Score=164.08 Aligned_cols=150 Identities=24% Similarity=0.405 Sum_probs=108.4
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+.+||+++|++|||||||++++.++.+ ..+.+|++... ..+.++ ...+.+|
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~------------------------~~~~~t~~~~~--~~~~~~--~~~~~i~ 67 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV------------------------VTTKPTIGFNV--ETLSYK--NLKLNVW 67 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE------------------------EEECSSTTCCE--EEEEET--TEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc------------------------CccCCcCccce--EEEEEC--CEEEEEE
Confidence 4679999999999999999999987543 11234555332 223333 3789999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
||||++.+...+..+++.+|++++|||++++.+|+.+..|+..+...
T Consensus 68 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~--------------------------------- 114 (183)
T 1moz_A 68 DLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQE--------------------------------- 114 (183)
T ss_dssp EEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTS---------------------------------
T ss_pred ECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcC---------------------------------
Confidence 99999999999999999999999999999999999998888877532
Q ss_pred ccccccccCCCccEEEEEeecCCCCcccceehhhhhh-----hhhccCeEEEEeeeeeccccceE
Q psy15725 171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGER-----KAKELNVMFIETSAKAGYNVKQV 230 (355)
Q Consensus 171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~-----~~~~~~~~~~~~sa~~~~~v~~i 230 (355)
....++|+++|+||+|+.+.. ...+... .....+.+++++|+.++.+++++
T Consensus 115 -------~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 170 (183)
T 1moz_A 115 -------EELQDAALLVFANKQDQPGAL--SASEVSKELNLVELKDRSWSIVASSAIKGEGITEG 170 (183)
T ss_dssp -------STTSSCEEEEEEECTTSTTCC--CHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHH
T ss_pred -------hhhCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEEccCCCCcCHHHH
Confidence 113479999999999986532 1111111 12234568999999999887753
No 110
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.87 E-value=3e-22 Score=178.96 Aligned_cols=90 Identities=12% Similarity=0.134 Sum_probs=65.9
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 94 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 94 (355)
||+++|+.|||||||++++.++..+.. ...+.||++.++... +..+.+++|||+|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~--------------------~~~~~~Tig~~~~~v-----~~~v~LqIWDTAG 55 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLD--------------------TLYLESTSNPSLEHF-----STLIDLAVMELPG 55 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGG--------------------GTTCCCCCSCCCEEE-----CSSSCEEEEECCS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCc--------------------cceecCeeeeeeEEE-----ccEEEEEEEECCC
Confidence 699999999999999998776322111 112457777776542 2347899999999
Q ss_pred cccccc---cccccccCccEEEEEEECCCcchhhhHHHH
Q psy15725 95 QERFRS---LIPSYIRDSTVAVVVYDITNANSFHQTSKW 130 (355)
Q Consensus 95 ~~~~~~---~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~ 130 (355)
+++|.. .+..++++++++|+|||++++ .++....|
T Consensus 56 QErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l 93 (331)
T 3r7w_B 56 QLNYFEPSYDSERLFKSVGALVYVIDSQDE-YINAITNL 93 (331)
T ss_dssp CSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHHHHH
T ss_pred chhccchhhhhhhhccCCCEEEEEEECCch-HHHHHHHH
Confidence 999964 468889999999999999987 33333333
No 111
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.85 E-value=1.3e-20 Score=162.78 Aligned_cols=91 Identities=16% Similarity=0.164 Sum_probs=57.8
Q ss_pred CcEEEEEEeCCCcccHH--HHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH---HHHHHHhhcC--cEEEEecCC
Q psy15725 254 STVAVVVYDITNANSFH--QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE---EGERKAKELN--VMFIETSAK 326 (355)
Q Consensus 254 ~~~vi~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~---~~~~~~~~~~--~~~~~~SA~ 326 (355)
++++++|+|+++..++. ....|+..+.... .++|+++|+||+|+.+.+.+... ....++...+ +++++|||+
T Consensus 109 ~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 187 (228)
T 2qu8_A 109 NGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTL 187 (228)
T ss_dssp SEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTT
T ss_pred ccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 34455555555544432 1123444443321 36788888888887665555543 3344555666 899999999
Q ss_pred CCCCHHHHHHHHHHHcCCC
Q psy15725 327 AGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 327 ~~~gv~~l~~~l~~~i~~~ 345 (355)
+|.||+++|++|.+.+.+.
T Consensus 188 ~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 188 TGVGVEQAKITACELLKND 206 (228)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988654
No 112
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.85 E-value=2.3e-21 Score=161.98 Aligned_cols=86 Identities=17% Similarity=0.203 Sum_probs=61.9
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725 254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333 (355)
Q Consensus 254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~ 333 (355)
++++++|+|.++ ++....|...+.. .+.|+++|+||+|+...+.+. .....+++..+++++++||++|.||++
T Consensus 86 ~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 158 (188)
T 2wjg_A 86 PDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGIEE 158 (188)
T ss_dssp CSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSHHH
T ss_pred CCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCHHH
Confidence 456666776553 3444556665554 468888888888875444333 234566667788999999999999999
Q ss_pred HHHHHHHHcCCCC
Q psy15725 334 LFRRVAAALPGMD 346 (355)
Q Consensus 334 l~~~l~~~i~~~~ 346 (355)
+|++|.+.+....
T Consensus 159 l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 159 LKKAISIAVKDKK 171 (188)
T ss_dssp HHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhcc
Confidence 9999999998765
No 113
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.85 E-value=2.8e-21 Score=162.47 Aligned_cols=85 Identities=11% Similarity=0.110 Sum_probs=53.4
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCH--HHHHH-HHhhcCcEEEEecCCCCCCH
Q psy15725 255 TVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST--EEGER-KAKELNVMFIETSAKAGYNV 331 (355)
Q Consensus 255 ~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~-~~~~~~~~~~~~SA~~~~gv 331 (355)
+++++|+|+++..+..+.. +...+.. .++|+++|+||+|+.+.+.+.. ++... +....+++++++||++|.||
T Consensus 107 ~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 182 (195)
T 1svi_A 107 KAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGK 182 (195)
T ss_dssp EEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTH
T ss_pred CEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCH
Confidence 4556666666555544321 1222222 4677888888888765443322 11111 33234579999999999999
Q ss_pred HHHHHHHHHHcC
Q psy15725 332 KQLFRRVAAALP 343 (355)
Q Consensus 332 ~~l~~~l~~~i~ 343 (355)
+++|++|.+.+.
T Consensus 183 ~~l~~~l~~~l~ 194 (195)
T 1svi_A 183 DEAWGAIKKMIN 194 (195)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999998875
No 114
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.85 E-value=1.3e-20 Score=169.92 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=59.6
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC--cEEEEecCCCCCCH
Q psy15725 254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN--VMFIETSAKAGYNV 331 (355)
Q Consensus 254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~SA~~~~gv 331 (355)
+|++++|+|+++..+..+...|+..+.. .++|+++|+||+|+.............+.+..+ .+++++||++|.|+
T Consensus 93 aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv 169 (308)
T 3iev_A 93 ADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANL 169 (308)
T ss_dssp CSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSH
T ss_pred CCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCH
Confidence 5555666666555555554444554444 356777777777765333333444445555553 68999999999999
Q ss_pred HHHHHHHHHHcCCCC
Q psy15725 332 KQLFRRVAAALPGMD 346 (355)
Q Consensus 332 ~~l~~~l~~~i~~~~ 346 (355)
+++|++|.+.++...
T Consensus 170 ~~L~~~l~~~l~~~~ 184 (308)
T 3iev_A 170 DELVKTILKYLPEGE 184 (308)
T ss_dssp HHHHHHHHHHSCBCC
T ss_pred HHHHHHHHHhCccCC
Confidence 999999999998653
No 115
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.85 E-value=2.7e-21 Score=187.45 Aligned_cols=167 Identities=21% Similarity=0.354 Sum_probs=113.3
Q ss_pred CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeee------ee--ee
Q psy15725 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSK------TM--YL 80 (355)
Q Consensus 9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~------~~--~~ 80 (355)
.+...+||+++|.+|||||||++++++..+...+. +|++.++... .+ ..
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~-----------------------~t~g~~~~~~~~~~~~~v~~~~ 93 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKES-----------------------QTHGLNVVTKQAPNIKGLENDD 93 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC----------------------------------CCCEEEEEGGGSGGGTTCS
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCC-----------------------CccceEEEEeccccccceeecC
Confidence 46778999999999999999999999966544443 4444444433 11 12
Q ss_pred cCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccccccc
Q psy15725 81 EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFH 160 (355)
Q Consensus 81 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
++....+.+|||||++.+..+...+++.+|++++|||+++. +.+..|+.++
T Consensus 94 ~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l-------------------------- 144 (535)
T 3dpu_A 94 ELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHI-------------------------- 144 (535)
T ss_dssp TTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHH--------------------------
T ss_pred CCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHH--------------------------
Confidence 33467899999999999988888888889999999887542 3334444433
Q ss_pred ccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCc
Q psy15725 161 HANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQ 240 (355)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~ 240 (355)
T Consensus 145 -------------------------------------------------------------------------------- 144 (535)
T 3dpu_A 145 -------------------------------------------------------------------------------- 144 (535)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEE
Q psy15725 241 ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF 320 (355)
Q Consensus 241 ~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~ 320 (355)
.... .++|+++|+||+|+...+.+..+.....+...++++
T Consensus 145 ---------------------------------------~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~ 184 (535)
T 3dpu_A 145 ---------------------------------------EKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRF 184 (535)
T ss_dssp ---------------------------------------HHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCE
T ss_pred ---------------------------------------HHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCce
Confidence 2222 356777777777776556666666777777778899
Q ss_pred EEecCCCCCCHHHHHHHHHHHcCCCCC
Q psy15725 321 IETSAKAGYNVKQLFRRVAAALPGMDS 347 (355)
Q Consensus 321 ~~~SA~~~~gv~~l~~~l~~~i~~~~~ 347 (355)
+++||++|.||+++|++|.+.+.....
T Consensus 185 ~~vSA~~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 185 HRISCKNGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp EECCC-----CTTHHHHHHHHHTCTTS
T ss_pred EEEecCcccCHHHHHHHHHHHHhcccc
Confidence 999999999999999999999987543
No 116
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.85 E-value=4.5e-21 Score=172.86 Aligned_cols=154 Identities=19% Similarity=0.295 Sum_probs=117.2
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
..+||+++|++|||||||+++++++..... ...+.+|++..+.... +++ .+.+.+||
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~--------------------~~~~~~Ti~~~~~~~~--~~~-~~~l~i~D 58 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFD--------------------TRRLGATIDVEHSHLR--FLG-NMTLNLWD 58 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGG--------------------GGGCCCCCSEEEEEEE--ETT-TEEEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcc--------------------ccCcCCccceEEEEEE--eCC-ceEEEEEE
Confidence 468999999999999999999988531110 1134456665555433 333 57899999
Q ss_pred cCCcccc-----cccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccc
Q psy15725 92 TAGQERF-----RSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166 (355)
Q Consensus 92 ~~g~~~~-----~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (355)
|||++.+ ...+..+++.+|++++|||++++++|+++..|...+....
T Consensus 59 t~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~---------------------------- 110 (307)
T 3r7w_A 59 CGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLR---------------------------- 110 (307)
T ss_dssp ECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHH----------------------------
T ss_pred CCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHH----------------------------
Confidence 9999988 7888889999999999999999999999988766665431
Q ss_pred cCccccccccccCCCccEEEEEeecCCCCc--ccc----eehhhhhhhhhccC---eEEEEeeeeeccccc
Q psy15725 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSD--KRQ----VSTEEGERKAKELN---VMFIETSAKAGYNVK 228 (355)
Q Consensus 167 ~~~~~~~~~~~~~~~~~piilv~nK~D~~~--~~~----v~~~~~~~~~~~~~---~~~~~~sa~~~~~v~ 228 (355)
....++|+++|+||+|+.. .+. +...+..+++...+ .+++++|+.+ .++.
T Consensus 111 -----------~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~ 169 (307)
T 3r7w_A 111 -----------KYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLY 169 (307)
T ss_dssp -----------HHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHH
T ss_pred -----------HhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHH
Confidence 1124799999999999976 444 55677778888886 7999999987 4433
No 117
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.85 E-value=2.1e-21 Score=162.38 Aligned_cols=61 Identities=26% Similarity=0.279 Sum_probs=46.9
Q ss_pred CCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-------EEEEecCCCCCCHHHHHHHHHHHcCCCCCC
Q psy15725 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-------MFIETSAKAGYNVKQLFRRVAAALPGMDST 348 (355)
Q Consensus 285 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-------~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~ 348 (355)
.++|+++|+||+|+...+ .+....+++..++ +++++||++|.||+++|++|.+.+...+++
T Consensus 121 ~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 188 (190)
T 2cxx_A 121 LDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQGR 188 (190)
T ss_dssp TTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC---
T ss_pred cCCceEEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhcc
Confidence 478999999999986544 4455566666554 479999999999999999999998776554
No 118
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.84 E-value=6.5e-21 Score=157.26 Aligned_cols=90 Identities=20% Similarity=0.243 Sum_probs=55.8
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+.+||+++|++|||||||+++|.+...... . ..++...++....+.+++ ..+.+||
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~---------------------~-~~~~~t~~~~~~~~~~~~--~~~~l~D 58 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIV---------------------T-DIAGTTRDVLREHIHIDG--MPLHIID 58 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCC---------------------C-SSTTCCCSCEEEEEEETT--EEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccee---------------------e-CCCCceeceeeEEEEECC--eEEEEEE
Confidence 458999999999999999999998542110 0 112222344445555555 3588999
Q ss_pred cCCcccccccc--------cccccCccEEEEEEECCCcchhh
Q psy15725 92 TAGQERFRSLI--------PSYIRDSTVAVVVYDITNANSFH 125 (355)
Q Consensus 92 ~~g~~~~~~~~--------~~~~~~~d~ii~v~d~~~~~s~~ 125 (355)
|||+.++.... ..+++.+|++++|||++++.+++
T Consensus 59 t~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~ 100 (172)
T 2gj8_A 59 TAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVD 100 (172)
T ss_dssp CCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCS
T ss_pred CCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHH
Confidence 99986532211 12355666666666666655554
No 119
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.84 E-value=1.5e-20 Score=152.85 Aligned_cols=53 Identities=21% Similarity=0.168 Sum_probs=36.8
Q ss_pred CceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALP 343 (355)
Q Consensus 286 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~~gv~~l~~~l~~~i~ 343 (355)
++|+++|+||+|+.+.+ .+...++ ..++ +++++||++|.|++++|++|.+.+|
T Consensus 108 ~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 108 GKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERLP 161 (161)
T ss_dssp TCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHCC
T ss_pred CCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhCc
Confidence 45666666666664331 1112223 3455 7999999999999999999999875
No 120
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.83 E-value=3.5e-20 Score=162.70 Aligned_cols=84 Identities=14% Similarity=0.171 Sum_probs=59.9
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725 254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333 (355)
Q Consensus 254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~ 333 (355)
+|++++|+|.++..+. ..|...+.+ .++|+++|+||+|+...+.+.. ....+++.++++++++||++|.||++
T Consensus 84 ~d~ii~V~D~t~~~~~---~~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi~e 156 (258)
T 3a1s_A 84 ADLVILVADSVNPEQS---LYLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEGLEE 156 (258)
T ss_dssp CSEEEEEEETTSCHHH---HHHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTTHHH
T ss_pred CCEEEEEeCCCchhhH---HHHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcCHHH
Confidence 5666777776654332 234444444 4688888888888754444432 34566777889999999999999999
Q ss_pred HHHHHHHHcCC
Q psy15725 334 LFRRVAAALPG 344 (355)
Q Consensus 334 l~~~l~~~i~~ 344 (355)
+|++|.+.+..
T Consensus 157 l~~~i~~~~~~ 167 (258)
T 3a1s_A 157 LKEKIVEYAQK 167 (258)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHhhc
Confidence 99999998753
No 121
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.82 E-value=7.1e-20 Score=153.61 Aligned_cols=87 Identities=14% Similarity=0.125 Sum_probs=54.2
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCccc--CCHHHHHHHHhh-cCcEEEEecCCCCCC
Q psy15725 254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ--VSTEEGERKAKE-LNVMFIETSAKAGYN 330 (355)
Q Consensus 254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~--v~~~~~~~~~~~-~~~~~~~~SA~~~~g 330 (355)
++++++|+|.++..+.... .....+.. .++|+++|+||+|+.+... ...++...++.. .+++++++||++|.|
T Consensus 105 ~~~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 180 (195)
T 3pqc_A 105 LQMVFLLVDGRIPPQDSDL-MMVEWMKS---LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEG 180 (195)
T ss_dssp EEEEEEEEETTSCCCHHHH-HHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTT
T ss_pred ceEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCC
Confidence 4556666666554433221 11222222 2678888888888754322 222333444444 336999999999999
Q ss_pred HHHHHHHHHHHcCC
Q psy15725 331 VKQLFRRVAAALPG 344 (355)
Q Consensus 331 v~~l~~~l~~~i~~ 344 (355)
|+++|++|.+.+.+
T Consensus 181 v~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 181 ISELLDLISTLLKE 194 (195)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999998864
No 122
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.82 E-value=2e-20 Score=165.23 Aligned_cols=84 Identities=18% Similarity=0.174 Sum_probs=57.9
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725 254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333 (355)
Q Consensus 254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~ 333 (355)
+|++++|+|+++.. ....|...+.+ .++|+++|+||+|+...+.+. .....+++.++++++++||++|.||++
T Consensus 81 ~d~vi~V~D~t~~e---~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~e 153 (272)
T 3b1v_A 81 ADSILNVVDATNLE---RNLYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVDQ 153 (272)
T ss_dssp CSEEEEEEEGGGHH---HHHHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHHH
T ss_pred CCEEEEEecCCchH---hHHHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHHH
Confidence 55566666655432 22234444444 478888888888875443333 234556677789999999999999999
Q ss_pred HHHHHHHHcCC
Q psy15725 334 LFRRVAAALPG 344 (355)
Q Consensus 334 l~~~l~~~i~~ 344 (355)
+|++|.+.+..
T Consensus 154 l~~~i~~~~~~ 164 (272)
T 3b1v_A 154 VVKKAAHTTTS 164 (272)
T ss_dssp HHHHHHHSCTT
T ss_pred HHHHHHHHHhh
Confidence 99999998754
No 123
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.81 E-value=3.9e-20 Score=158.89 Aligned_cols=91 Identities=9% Similarity=-0.031 Sum_probs=53.5
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCH---HHHHHHHh------hcCcEEEEec
Q psy15725 254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST---EEGERKAK------ELNVMFIETS 324 (355)
Q Consensus 254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~---~~~~~~~~------~~~~~~~~~S 324 (355)
+|++++|+|.++..+.. ...++..+.. .++|+++|+||+|+.+.+.... .....+.. ..+++++++|
T Consensus 116 ~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~S 191 (223)
T 4dhe_A 116 LCGMILMMDARRPLTEL-DRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFS 191 (223)
T ss_dssp EEEEEEEEETTSCCCHH-HHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEB
T ss_pred cCEEEEEEeCCCCCCHH-HHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEee
Confidence 35566667766544321 2233444433 4677777777777754332211 11111222 2457999999
Q ss_pred CCCCCCHHHHHHHHHHHcCCCCCC
Q psy15725 325 AKAGYNVKQLFRRVAAALPGMDST 348 (355)
Q Consensus 325 A~~~~gv~~l~~~l~~~i~~~~~~ 348 (355)
|++|.||+++|++|.+.++.....
T Consensus 192 A~~g~gv~~l~~~l~~~~~~~~~~ 215 (223)
T 4dhe_A 192 ALKRTGLDDAHALIESWLRPAAAD 215 (223)
T ss_dssp TTTTBSHHHHHHHHHHHHC-----
T ss_pred cCCCcCHHHHHHHHHHhcCccCCc
Confidence 999999999999999999876543
No 124
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.80 E-value=1.2e-20 Score=161.71 Aligned_cols=155 Identities=19% Similarity=0.254 Sum_probs=104.5
Q ss_pred CCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEE
Q psy15725 6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV 85 (355)
Q Consensus 6 ~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 85 (355)
......+.++|+++|++|||||||+++|.+..+... ...+.++++.++ ...
T Consensus 5 ~~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~--------------------~~~~~~~~~~~~---------~~~ 55 (218)
T 1nrj_B 5 GIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT--------------------VVSQEPLSAADY---------DGS 55 (218)
T ss_dssp -----CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB--------------------CCCSSCEEETTG---------GGS
T ss_pred CCCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCe--------------------eeecCceEEEEe---------eCc
Confidence 334455679999999999999999999999664331 011222322222 334
Q ss_pred EEEEEecCCcccccccccccccC----ccEEEEEEECC-CcchhhhHHHHHHHHhhhcCCceEEeecccccccccccccc
Q psy15725 86 RLQLWDTAGQERFRSLIPSYIRD----STVAVVVYDIT-NANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFH 160 (355)
Q Consensus 86 ~~~i~D~~g~~~~~~~~~~~~~~----~d~ii~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
.+.+|||||++.+...+..+++. +|++++|||++ ++.+|.....|+.++.....
T Consensus 56 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~--------------------- 114 (218)
T 1nrj_B 56 GVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITE--------------------- 114 (218)
T ss_dssp SCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHH---------------------
T ss_pred eEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhccc---------------------
Confidence 68999999999999888888887 89999999999 88999998888887754310
Q ss_pred ccCccccCccccccccccCCCccEEEEEeecCCCCccccee------hhhhhhhhhccCeEEEEeeeeeccc
Q psy15725 161 HANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVS------TEEGERKAKELNVMFIETSAKAGYN 226 (355)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~------~~~~~~~~~~~~~~~~~~sa~~~~~ 226 (355)
.....++|+++|+||+|+...+.+. ..+...++...+.+++++|+.++.+
T Consensus 115 ----------------~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 115 ----------------SSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp ----------------HHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred ----------------ccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 0023479999999999997765443 3445556666667788888876654
No 125
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.80 E-value=5.9e-19 Score=169.33 Aligned_cols=268 Identities=16% Similarity=0.122 Sum_probs=141.7
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+..+|+++|++|+|||||+++|+..........++......-..+ .+....+ ...+.++......+.++...+++|
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~-~d~~~~e--~~~GiTi~~~~~~~~~~~~~i~li 87 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHAT-SDWMELE--KQRGISVTTSVMQFPYKDYLINLL 87 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCH-HHHHHHH--HHHCCSSSSSEEEEEETTEEEEEE
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeecccccccee-cccchhh--hcCCeeEEEeEEEEEeCCEEEEEE
Confidence 3468999999999999999999975321111111110000000000 0000000 012333333444444556789999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
||||+.+|...+..+++.+|++++|+|+++..+.+....|... ..
T Consensus 88 DTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~-~~---------------------------------- 132 (528)
T 3tr5_A 88 DTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVC-RL---------------------------------- 132 (528)
T ss_dssp CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHH-HT----------------------------------
T ss_pred ECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH-HH----------------------------------
Confidence 9999999999999999999999999999998777776666432 21
Q ss_pred ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccc--cc
Q psy15725 171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSL--IP 248 (355)
Q Consensus 171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~--~~ 248 (355)
.++|+++|+||+|+.... ......++.+.++..+..+....+.+. -+.-++|......+.-. ..
T Consensus 133 ----------~~iPiivviNK~Dl~~~~--~~~~l~ei~~~l~~~~~~~~~pig~~~--~f~gv~dl~~~~~~~~~~~~~ 198 (528)
T 3tr5_A 133 ----------RHTPIMTFINKMDRDTRP--SIELLDEIESILRIHCAPVTWPIGMGK--YFKGIYHLIEDAIYLYQPGKH 198 (528)
T ss_dssp ----------TTCCEEEEEECTTSCCSC--HHHHHHHHHHHHCCEEEESEEEESCGG--GCCEEEETTTTEEEECCTTSS
T ss_pred ----------cCCCEEEEEeCCCCcccc--HHHHHHHHHHhhCCCceeeecccccCC--ceeEEEEeecCEEEEecCCCC
Confidence 278999999999986432 223344455555655555443332211 11122222221111000 00
Q ss_pred ccccCCcEEEEEEeCCCcccHHH-HHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCC
Q psy15725 249 SYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA 327 (355)
Q Consensus 249 ~~~~~~~~vi~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~ 327 (355)
....... ..-+..+.. +.. +.+..+.+.+.. .+. ...........+.....+|++++||++
T Consensus 199 ~~~~~~~---~~~~~~~~~-~~~~l~~~~~~~~e~~-------------~l~-~~~~~~~~~~~~~~~~~~PV~~gSA~~ 260 (528)
T 3tr5_A 199 ERVGESE---RIEGINNPE-LDKKLGDLASELRNEI-------------ELV-KGASHPFEREGYLKGELTPIFFGSAIN 260 (528)
T ss_dssp SSTTCSC---EEECTTCHH-HHHHHTHHHHHHHHHH-------------HHH-HHHSCCCCHHHHHTTSEEEEEECBGGG
T ss_pred Ccccccc---cccccchHH-HHHHHHHHHHHHhhhc-------------chh-hhhhhHHHHHHHhcCceeEEEeccccC
Confidence 0001111 111222221 111 111011111000 000 000000002344444557999999999
Q ss_pred CCCHHHHHHHHHHHcCCCCCC
Q psy15725 328 GYNVKQLFRRVAAALPGMDST 348 (355)
Q Consensus 328 ~~gv~~l~~~l~~~i~~~~~~ 348 (355)
|.||+++|++|.+.+|.+...
T Consensus 261 ~~GV~~Lld~i~~~~p~p~~~ 281 (528)
T 3tr5_A 261 NFGVGELLDAFVKEAPPPQGR 281 (528)
T ss_dssp TBSHHHHHHHHHHHSCCCCCB
T ss_pred CccHHHHHHHHHHhCCCCCcc
Confidence 999999999999999987643
No 126
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.80 E-value=3.2e-19 Score=159.88 Aligned_cols=88 Identities=20% Similarity=0.156 Sum_probs=54.7
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHH-HHHHhhcCCCceEEEEeeCCCCCCccc-CCHHHHHHHHhhcCcEEEEecCCCCC
Q psy15725 252 RDSTVAVVVYDITNANSFHQTSKWI-DDVRTERGSDVIIMLVGNKTDLSDKRQ-VSTEEGERKAKELNVMFIETSAKAGY 329 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~piilv~nK~Dl~~~~~-v~~~~~~~~~~~~~~~~~~~SA~~~~ 329 (355)
..+|++++|+|+++..+.. ..|+ +.+.... .++|+++|+||+|+.+.+. + .+....+ ....+++++||++|.
T Consensus 85 ~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~--~~~~~~~~iSA~~g~ 158 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEEA-MKAYHEL--LPEAEPRMLSALDER 158 (301)
T ss_dssp SSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHH-HHHHHHT--STTSEEEECCTTCHH
T ss_pred hcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHHH-HHHHHHh--cCcCcEEEEeCCCCC
Confidence 3466666666666554332 2333 3333321 3678888888888754332 1 1111111 123589999999999
Q ss_pred CHHHHHHHHHHHcCCC
Q psy15725 330 NVKQLFRRVAAALPGM 345 (355)
Q Consensus 330 gv~~l~~~l~~~i~~~ 345 (355)
|++++|++|.+.++..
T Consensus 159 gv~~l~~~l~~~l~~~ 174 (301)
T 1wf3_A 159 QVAELKADLLALMPEG 174 (301)
T ss_dssp HHHHHHHHHHTTCCBC
T ss_pred CHHHHHHHHHHhcccC
Confidence 9999999999988754
No 127
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.80 E-value=3.3e-19 Score=157.93 Aligned_cols=87 Identities=30% Similarity=0.226 Sum_probs=58.4
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725 254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333 (355)
Q Consensus 254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~ 333 (355)
+|++++|+|.++.. ....+...+.+. ..+|+++|+||+|+...+.+... ...+.+..+++++++||++|.|+++
T Consensus 82 ~d~vi~v~D~~~~~---~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~~ 155 (271)
T 3k53_A 82 ADVIVDIVDSTCLM---RNLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGVEE 155 (271)
T ss_dssp CSEEEEEEEGGGHH---HHHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTHHH
T ss_pred CcEEEEEecCCcch---hhHHHHHHHHhc--CCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCHHH
Confidence 56666666665532 222333333332 12888888888887543333222 4556677789999999999999999
Q ss_pred HHHHHHHHcCCCC
Q psy15725 334 LFRRVAAALPGMD 346 (355)
Q Consensus 334 l~~~l~~~i~~~~ 346 (355)
+|++|.+.+....
T Consensus 156 l~~~i~~~~~~~~ 168 (271)
T 3k53_A 156 LKRMIALMAEGKV 168 (271)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHhccc
Confidence 9999999886554
No 128
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.78 E-value=1.7e-18 Score=164.07 Aligned_cols=55 Identities=18% Similarity=0.135 Sum_probs=39.9
Q ss_pred CceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343 (355)
Q Consensus 286 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~ 343 (355)
++|+++|+||+|+....... ...+.+...++++++||++|.||+++|++|.+.+.
T Consensus 343 ~~piIvV~NK~Dl~~~~~~~---~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 343 AAKFLTVANKLDRAANADAL---IRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TSEEEEEEECTTSCTTTHHH---HHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred CCCEEEEEECcCCCCccchh---HHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 57777888888875443321 12233322368999999999999999999999987
No 129
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.78 E-value=2.3e-19 Score=161.32 Aligned_cols=86 Identities=16% Similarity=0.173 Sum_probs=65.8
Q ss_pred CCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcc----------------cCCHHHHHHHH----------hh
Q psy15725 263 ITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKR----------------QVSTEEGERKA----------KE 315 (355)
Q Consensus 263 ~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~----------------~v~~~~~~~~~----------~~ 315 (355)
.++..++++...|+..+.... ..++|++|++||+|+...+ .+..+++..++ ..
T Consensus 210 ~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~ 289 (327)
T 3ohm_A 210 SDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSD 289 (327)
T ss_dssp CTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTT
T ss_pred cccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhccccc
Confidence 345566777777777776543 2689999999999985433 46677777773 34
Q ss_pred cCcEEEEecCCCCCCHHHHHHHHHHHcCCCCCC
Q psy15725 316 LNVMFIETSAKAGYNVKQLFRRVAAALPGMDST 348 (355)
Q Consensus 316 ~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~ 348 (355)
.++.+++|||+++.||+++|+.+.+.|.+...+
T Consensus 290 ~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~l~ 322 (327)
T 3ohm_A 290 KIIYSHFTCATDTENIRFVFAAVKDTILQLNLK 322 (327)
T ss_dssp SCEEEEECCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCcEEEEEEeecCHHHHHHHHHHHHHHHHHhHH
Confidence 567899999999999999999999999876543
No 130
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.77 E-value=4.4e-18 Score=159.05 Aligned_cols=117 Identities=15% Similarity=0.051 Sum_probs=74.2
Q ss_pred CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCC---ceeeeecccceeeecccCCCCCccccccceeeeeeeeee---cC
Q psy15725 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNT---YQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL---ED 82 (355)
Q Consensus 9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~ 82 (355)
...+.++|+++|++|+|||||+++|++...... ...++ +.+ ........+..+........ ..
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNI-GVC----------ESCKKPEAYVTEPSCKSCGSDDEPK 72 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEE-EEC----------TTSCTTTTEESSSCCGGGTCCSCCE
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccce-eec----------cccccccceeccccccccccccccc
Confidence 455779999999999999999999998543321 11111 000 00000000000000000000 12
Q ss_pred cEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725 83 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT 136 (355)
Q Consensus 83 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~ 136 (355)
....+.+|||||++.|...+...+..+|++++|+|+++..++.+...|+..+..
T Consensus 73 ~~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~ 126 (403)
T 3sjy_A 73 FLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI 126 (403)
T ss_dssp EEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHH
T ss_pred ccceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHH
Confidence 236899999999999999999999999999999999997767666666665543
No 131
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.77 E-value=1.5e-19 Score=168.52 Aligned_cols=189 Identities=15% Similarity=0.139 Sum_probs=126.4
Q ss_pred CCCCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCc
Q psy15725 4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 83 (355)
Q Consensus 4 ~~~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 83 (355)
+++.......++|+++|+.|+|||||+++|++..+... ...+++..+.....+.+...
T Consensus 25 sm~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~----------------------~~~~gtT~d~~~~~~~~~~~ 82 (423)
T 3qq5_A 25 TMRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIV----------------------SDYAGTTTDPVYKSMELHPI 82 (423)
T ss_dssp CCCC---CCCEEEEEECSCSTTTTTTTTSSCC-----------------------------------CCCCEEEEEETTT
T ss_pred ccccCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCcc----------------------CCCCCeeeeeEEEEEEECCC
Confidence 34444556789999999999999999999998653211 01112222333344444443
Q ss_pred EEEEEEEecCCcccccccc-------cccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccc
Q psy15725 84 TVRLQLWDTAGQERFRSLI-------PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTH 156 (355)
Q Consensus 84 ~~~~~i~D~~g~~~~~~~~-------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (355)
..+.+|||||+..|..+. ..+++.+|++++|||++.. +....|+..+...
T Consensus 83 -~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~------------------- 139 (423)
T 3qq5_A 83 -GPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM------------------- 139 (423)
T ss_dssp -EEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT-------------------
T ss_pred -CeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc-------------------
Confidence 278999999998887653 3468899999999999332 3345566666542
Q ss_pred ccccccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEe
Q psy15725 157 LSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWD 236 (355)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D 236 (355)
++|+++|+||+|+.+.+.. +...+++...+.+++++|+.++.+++.++..+.+
T Consensus 140 -------------------------~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~ 192 (423)
T 3qq5_A 140 -------------------------EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISE 192 (423)
T ss_dssp -------------------------TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHH
T ss_pred -------------------------CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999765543 4556677778889999999999999887665554
Q ss_pred CCCcccccccccccccCCcEEEEEEeCC
Q psy15725 237 TAGQERFRSLIPSYIRDSTVAVVVYDIT 264 (355)
Q Consensus 237 ~~g~~~~~~~~~~~~~~~~~vi~v~d~~ 264 (355)
.........+...+....+.++++..++
T Consensus 193 ~l~~~~e~~l~~dLv~~gd~v~lv~pid 220 (423)
T 3qq5_A 193 ILPGDEEIPYLGDLIDGGDLVILVVPID 220 (423)
T ss_dssp HSCCCCCCCSCSCCCCTTCCEEEECCCS
T ss_pred hhhhhccCcchhhccccCceEEEEeecc
Confidence 4333323345567778888888888665
No 132
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.76 E-value=3.8e-19 Score=155.83 Aligned_cols=149 Identities=13% Similarity=0.178 Sum_probs=105.1
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
.+|+++|.+|||||||+|+|++..... ...|++..+.....+..++ ..+.+||||
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v-----------------------~~~pg~Tv~~~~~~~~~~~--~~~~lvDtp 56 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRV-----------------------GNWPGVTVEKKTGEFLLGE--HLIEITDLP 56 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEE-----------------------EECTTSSSEEEEEEEEETT--EEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCc-----------------------cCCCCceEEEEEEEEEECC--eEEEEEeCC
Confidence 379999999999999999999853110 1123333344444444444 479999999
Q ss_pred Ccccccc----------cccccc--cCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccc
Q psy15725 94 GQERFRS----------LIPSYI--RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHH 161 (355)
Q Consensus 94 g~~~~~~----------~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (355)
|+..+.. +...++ ..+|++++|+|+++.+++..+..|+.+
T Consensus 57 G~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~l~~---------------------------- 108 (256)
T 3iby_A 57 GVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLFE---------------------------- 108 (256)
T ss_dssp CCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHHHTT----------------------------
T ss_pred CcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHHHHH----------------------------
Confidence 9977764 445556 789999999999996555444333222
Q ss_pred cCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEE
Q psy15725 162 ANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLW 235 (355)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~ 235 (355)
.++|+++|+||+|+...+.+.. ....+....+++++++|+.++.+++.++..+.
T Consensus 109 -------------------~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~ 162 (256)
T 3iby_A 109 -------------------LGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNIGIPALQQSLL 162 (256)
T ss_dssp -------------------SCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTBSHHHHHHHHH
T ss_pred -------------------cCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 2789999999999865544333 24456677889999999999999887654443
No 133
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.76 E-value=9e-18 Score=162.88 Aligned_cols=112 Identities=17% Similarity=0.214 Sum_probs=67.0
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee-----cCcEEEE
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-----EDRTVRL 87 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----~~~~~~~ 87 (355)
..||+++|+.++|||||+++|+.....-... . +-..++ +....+. +.|+++......+ ++....+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~-~------~~~~~~-D~~~~Er--erGiTi~~~~~~~~~~~~~g~~~~l 73 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDR-E------MEAQVL-DSMDLER--ERGITIKAQSVTLDYKASDGETYQL 73 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC------------------------------------CEEEEEEECTTSCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccc-c------cccccc-ccchhhh--cccceeeeeEEEEEEecCCCCeEEE
Confidence 4799999999999999999998743110000 0 000000 1111111 2233333222222 4557899
Q ss_pred EEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725 88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134 (355)
Q Consensus 88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 134 (355)
++|||||+.+|...+...++.+|++++|||+++..+++....|...+
T Consensus 74 ~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~ 120 (599)
T 3cb4_D 74 NFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM 120 (599)
T ss_dssp EEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH
T ss_pred EEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888777776554
No 134
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.76 E-value=1.2e-17 Score=161.67 Aligned_cols=113 Identities=16% Similarity=0.269 Sum_probs=69.5
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcC--CCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee---cCcEEE
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDS--FDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL---EDRTVR 86 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~ 86 (355)
...+|+++|+.++|||||+++|+... +.... .-..+ .+....+....+.+......+.+ ++....
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~---------~~~~~-~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~ 74 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISERE---------KREQL-LDTLDVERERGITVKMQAVRMFYKAKDGNTYK 74 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC---------------------------------CCCCSEEEEEECTTSCEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCccccc---------ccccc-cccchhhhcccceeeeeEEEEEEEcCCCCeEE
Confidence 46799999999999999999998732 11100 00000 01111111111111111112212 455689
Q ss_pred EEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725 87 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134 (355)
Q Consensus 87 ~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 134 (355)
+++|||||+.+|...+...++.+|++++|||+++..+++....|....
T Consensus 75 inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~ 122 (600)
T 2ywe_A 75 LHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV 122 (600)
T ss_dssp EEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH
T ss_pred EEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH
Confidence 999999999999998888999999999999999988888777776554
No 135
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.76 E-value=8.3e-19 Score=155.41 Aligned_cols=150 Identities=17% Similarity=0.248 Sum_probs=103.4
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
++++|+++|.+|||||||+|+|++..+.. ...|++..+.....+...+ ..+.+||
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v-----------------------~~~~g~t~~~~~~~~~~~~--~~~~liD 56 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRV-----------------------GNWAGVTVERKEGQFSTTD--HQVTLVD 56 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEE-----------------------EECTTSSSEEEEEEEECSS--CEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCccc-----------------------CCCCCeeEEEEEEEEEeCC--CceEEEE
Confidence 46899999999999999999999854211 1112223333344444433 4688999
Q ss_pred cCCccccccc----------ccccc--cCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccc
Q psy15725 92 TAGQERFRSL----------IPSYI--RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSF 159 (355)
Q Consensus 92 ~~g~~~~~~~----------~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
|||+..+... ...++ +.+|++++|+|+++.+....+..|+.++
T Consensus 57 tpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~------------------------- 111 (274)
T 3i8s_A 57 LPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLEL------------------------- 111 (274)
T ss_dssp CCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH-------------------------
T ss_pred CcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHhc-------------------------
Confidence 9999877632 22222 6899999999999865544433333322
Q ss_pred cccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEE
Q psy15725 160 HHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234 (355)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i 234 (355)
++|+++|+||+|+.+.+.+.. ....++...+++++++|+.++.+++.++..+
T Consensus 112 ----------------------~~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i 163 (274)
T 3i8s_A 112 ----------------------GIPCIVALNMLDIAEKQNIRI-EIDALSARLGCPVIPLVSTRGRGIEALKLAI 163 (274)
T ss_dssp ----------------------TCCEEEEEECHHHHHHTTEEE-CHHHHHHHHTSCEEECCCGGGHHHHHHHHHH
T ss_pred ----------------------CCCEEEEEECccchhhhhHHH-HHHHHHHhcCCCEEEEEcCCCCCHHHHHHHH
Confidence 799999999999865444332 3456677788999999999999988765443
No 136
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.75 E-value=3e-20 Score=169.55 Aligned_cols=119 Identities=21% Similarity=0.286 Sum_probs=100.6
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCC----------cccHHHHHHHHHHHHhhc-CCCceEEEEeeCC
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN----------ANSFHQTSKWIDDVRTER-GSDVIIMLVGNKT 296 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~ 296 (355)
+.+.+.+||++|++.++.+|..++.+++++|||+|+++ ..++++...|+..+.... ..+.|++|++||+
T Consensus 191 ~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 191 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECc
Confidence 46789999999999999999999999999999999998 567888888988887643 3689999999999
Q ss_pred CCCCcc---------------cCCHHHHHHHHh-----------hcCcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725 297 DLSDKR---------------QVSTEEGERKAK-----------ELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346 (355)
Q Consensus 297 Dl~~~~---------------~v~~~~~~~~~~-----------~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~ 346 (355)
|+...+ .+..+++..++. ..++++++|||+++.||+++|+++.+.|....
T Consensus 271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~ 346 (353)
T 1cip_A 271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 346 (353)
T ss_dssp HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHH
Confidence 985322 356677777765 35689999999999999999999999987544
No 137
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.74 E-value=5.9e-18 Score=162.59 Aligned_cols=110 Identities=15% Similarity=0.218 Sum_probs=65.5
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+..+|+++|++|+|||||+++|+.........+++.+..... .....+.. ..++.++++......+.++...+++|
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~--~~~~D~~~-~E~~rGiTi~~~~~~~~~~~~~i~li 87 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQ--HAKSDWME-MEKQRGISITTSVMQFPYHDCLVNLL 87 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC----------------------------------CCTTEEEEEETTEEEEEE
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCcccc--ceeeccch-hcccCCcceeeeEEEEEECCeEEEEE
Confidence 4578999999999999999999997421111111111100000 00001100 11233333333344445556789999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcch
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s 123 (355)
||||+.+|...+..+++.+|++|+|+|+++...
T Consensus 88 DTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~ 120 (529)
T 2h5e_A 88 DTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVE 120 (529)
T ss_dssp CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSC
T ss_pred ECCCChhHHHHHHHHHHHCCEEEEEEeCCccch
Confidence 999999999988899999999999999998643
No 138
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.74 E-value=5.1e-18 Score=154.25 Aligned_cols=62 Identities=21% Similarity=0.205 Sum_probs=44.3
Q ss_pred CCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC--cEEEEecCCCCCCHHHHHHHHHHHcCCCCCCCC
Q psy15725 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN--VMFIETSAKAGYNVKQLFRRVAAALPGMDSTEN 350 (355)
Q Consensus 285 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~~~ 350 (355)
.++|+++|+||+|+...+ +....+.+... ++++++||+++.||++++++|.+.+...+....
T Consensus 273 ~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~~~~ 336 (342)
T 1lnz_A 273 TERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTPEFPL 336 (342)
T ss_dssp TTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSCCCCCS
T ss_pred cCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhhCccccC
Confidence 356777777777765322 22233444444 689999999999999999999999987765333
No 139
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.74 E-value=1.5e-17 Score=164.86 Aligned_cols=276 Identities=13% Similarity=0.079 Sum_probs=142.1
Q ss_pred CCCCCCCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCC--ccccccceeeeeeee
Q psy15725 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN--TYQATIGIDFLSKTM 78 (355)
Q Consensus 1 ~~~~~~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~t~~~~~~~~~~ 78 (355)
|+..+. .......+|+++|++|+|||||+++|+...........+.+++..+ +.... ....|+... ..
T Consensus 1 M~~~l~-~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~-----d~~~~E~~~giTi~~~----~~ 70 (691)
T 1dar_A 1 MAVKVE-YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATM-----DFMEQERERGITITAA----VT 70 (691)
T ss_dssp CCTTCC-CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC---------------------------------CC----EE
T ss_pred CCcccc-CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceec-----cCchhhhhcccccccc----eE
Confidence 554432 2345679999999999999999999986321111001111110000 00011 112233222 22
Q ss_pred eecCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccccc
Q psy15725 79 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLS 158 (355)
Q Consensus 79 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (355)
.+.+....+++|||||+.+|...+..+++.+|++++|+|+++..+++....|.... .
T Consensus 71 ~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~-~---------------------- 127 (691)
T 1dar_A 71 TCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE-K---------------------- 127 (691)
T ss_dssp EEEETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHH-H----------------------
T ss_pred EEEECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHH-H----------------------
Confidence 23334578999999999999999999999999999999999988888777665432 2
Q ss_pred ccccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeE----EEEeeeeeccccceEEEEE
Q psy15725 159 FHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM----FIETSAKAGYNVKQVRLQL 234 (355)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~----~~~~sa~~~~~v~~i~~~i 234 (355)
.++|+++|+||+|+.... ......++...++.. ...+++ +.+... +
T Consensus 128 ----------------------~~~p~ivviNKiD~~~~~--~~~~~~~l~~~l~~~~~~~~~Pi~~--~~~~~g----~ 177 (691)
T 1dar_A 128 ----------------------YKVPRIAFANKMDKTGAD--LWLVIRTMQERLGARPVVMQLPIGR--EDTFSG----I 177 (691)
T ss_dssp ----------------------TTCCEEEEEECTTSTTCC--HHHHHHHHHHTTCCCEEECEEEESC--GGGCCE----E
T ss_pred ----------------------cCCCEEEEEECCCcccCC--HHHHHHHHHHHhCCCccceeccccC--CCcccc----h
Confidence 278999999999986532 112222333333322 223332 222222 2
Q ss_pred EeCCCccccccccc-ccccCCcEEEEEEeCCCcccHH-HHHHHHHHHHhhcCCCce--EEEEeeCCCCCCcccCCHHHHH
Q psy15725 235 WDTAGQERFRSLIP-SYIRDSTVAVVVYDITNANSFH-QTSKWIDDVRTERGSDVI--IMLVGNKTDLSDKRQVSTEEGE 310 (355)
Q Consensus 235 ~D~~g~~~~~~~~~-~~~~~~~~vi~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~p--iilv~nK~Dl~~~~~v~~~~~~ 310 (355)
.|......+ .|. . .+.. ....+.. ..+. ....+.+.+.+...+.-. +--.++..++ +...+......
T Consensus 178 ~d~~~~~~~--~~~~~--~g~~--~~~~~~~--~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~-~~~~~~~~~~~ 248 (691)
T 1dar_A 178 IDVLRMKAY--TYGND--LGTD--IREIPIP--EEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEP-TEEELVAAIRK 248 (691)
T ss_dssp EETTTTEEE--EECST--TSCC--EEEECCC--GGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCC-CHHHHHHHHHH
T ss_pred hhhhcceee--EeccC--CCce--eEEecCC--HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCC-CHHHHHHHHHH
Confidence 332211111 000 0 0110 1111221 2222 233444444332211000 0000000011 11112122222
Q ss_pred HHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCCCC
Q psy15725 311 RKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDST 348 (355)
Q Consensus 311 ~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~ 348 (355)
.+.....+|++++||.+|.|++++++.|.+.+|.+...
T Consensus 249 ~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~ 286 (691)
T 1dar_A 249 GTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDI 286 (691)
T ss_dssp HHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTTS
T ss_pred HHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChhhc
Confidence 33333447999999999999999999999999988653
No 140
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.74 E-value=5.3e-17 Score=151.96 Aligned_cols=90 Identities=17% Similarity=0.154 Sum_probs=59.7
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCcccc--ccceeeeeeeeee---------
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA--TIGIDFLSKTMYL--------- 80 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~--------- 80 (355)
+.++|+++|+.++|||||+++|++.... .+..+..+ |+...+....+..
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~--------------------~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~ 66 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTD--------------------RHSEELRRGISIRLGYADCEIRKCPQCGTYTT 66 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCC--------------------C-------CCCCCCEEEEEEEEECTTTCCEES
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccc--------------------cCcccccCCcEEEecccccccccccccccccc
Confidence 5699999999999999999999863211 11111122 2222222211110
Q ss_pred ----c--C----cEEEEEEEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725 81 ----E--D----RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121 (355)
Q Consensus 81 ----~--~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 121 (355)
+ + ....+.+|||||++.|...+...+..+|++++|+|+++.
T Consensus 67 ~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g 117 (408)
T 1s0u_A 67 KPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEP 117 (408)
T ss_dssp SSBCTTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSC
T ss_pred cccccccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCC
Confidence 1 1 136899999999999988887778888999999999864
No 141
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.74 E-value=1.6e-17 Score=149.05 Aligned_cols=89 Identities=19% Similarity=0.187 Sum_probs=55.5
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCCCC
Q psy15725 252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYN 330 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~~g 330 (355)
..+|++++|+|.++ .+ ....++..... ..+.|+++++||+|+...+.........+.+..++ .++++||++|.|
T Consensus 87 ~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~ 161 (301)
T 1ega_A 87 GDVELVIFVVEGTR-WT--PDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLN 161 (301)
T ss_dssp CCEEEEEEEEETTC-CC--HHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred hcCCEEEEEEeCCC-CC--HHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCC
Confidence 33555566666544 22 22223322221 14688888888888764222112233344455565 799999999999
Q ss_pred HHHHHHHHHHHcCCC
Q psy15725 331 VKQLFRRVAAALPGM 345 (355)
Q Consensus 331 v~~l~~~l~~~i~~~ 345 (355)
+++++++|.+.++..
T Consensus 162 v~~l~~~i~~~l~~~ 176 (301)
T 1ega_A 162 VDTIAAIVRKHLPEA 176 (301)
T ss_dssp HHHHHHHHHTTCCBC
T ss_pred HHHHHHHHHHhCCcC
Confidence 999999999988754
No 142
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.73 E-value=1.9e-17 Score=157.08 Aligned_cols=82 Identities=17% Similarity=0.244 Sum_probs=54.6
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHH
Q psy15725 253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 332 (355)
Q Consensus 253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~ 332 (355)
.+|++++|+|++++.++++.. +++.+ .++|+++|+||+|+... +...+...+. ..+++++++||++|.||+
T Consensus 323 ~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAktg~Gi~ 393 (482)
T 1xzp_A 323 KADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALKGEGLE 393 (482)
T ss_dssp HCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGGTCCHH
T ss_pred cccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCCCCCHH
Confidence 356666666666665554321 22222 36789999999998532 3333333332 234689999999999999
Q ss_pred HHHHHHHHHcC
Q psy15725 333 QLFRRVAAALP 343 (355)
Q Consensus 333 ~l~~~l~~~i~ 343 (355)
+++++|.+.+.
T Consensus 394 eL~~~l~~~~~ 404 (482)
T 1xzp_A 394 KLEESIYRETQ 404 (482)
T ss_dssp HHHHHHHHHTH
T ss_pred HHHHHHHHHHh
Confidence 99999999865
No 143
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.72 E-value=2.6e-17 Score=156.82 Aligned_cols=97 Identities=21% Similarity=0.224 Sum_probs=62.8
Q ss_pred CCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEE
Q psy15725 6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV 85 (355)
Q Consensus 6 ~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 85 (355)
.+....+.++|+++|+.++|||||+++|++...... .+.+..+..+++..+.....+.+++ .
T Consensus 12 ~~~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~----------------~d~~~~e~~~GiTi~~~~~~~~~~~--~ 73 (482)
T 1wb1_A 12 RPHMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSA----------------HDKLPESQKRGITIDIGFSAFKLEN--Y 73 (482)
T ss_dssp -CCCCCEEEEEEEEECTTSSHHHHHHHHHTTC------------------------------------CCCEEEETT--E
T ss_pred chhhcCCCCEEEEECCCCChHHHHHHHHHCCCcccc----------------cccccccccCccEEecceEEEEECC--E
Confidence 344567889999999999999999999987441000 0112222222222232223333333 6
Q ss_pred EEEEEecCCcccccccccccccCccEEEEEEECCC
Q psy15725 86 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120 (355)
Q Consensus 86 ~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 120 (355)
.+.+|||||+++|...+...+..+|++++|+|+++
T Consensus 74 ~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~ 108 (482)
T 1wb1_A 74 RITLVDAPGHADLIRAVVSAADIIDLALIVVDAKE 108 (482)
T ss_dssp EEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTT
T ss_pred EEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCC
Confidence 89999999999998888888999999999999987
No 144
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.7e-18 Score=143.92 Aligned_cols=124 Identities=21% Similarity=0.312 Sum_probs=88.5
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 89 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i 89 (355)
..+.++|+++|++|||||||+++|.+..+.... ....++++.++ ....+.+
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~--------------------~~~~~~~~~~~---------~~~~~~l 95 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV--------------------VSQEPLSAADY---------DGSGVTL 95 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------------------CC---------CCTTCSE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCccc--------------------ccCCCceeeee---------cCCeEEE
Confidence 356789999999999999999999996543210 01122222221 3346889
Q ss_pred EecCCcccccccccccccC----ccEEEEEEECC-CcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCc
Q psy15725 90 WDTAGQERFRSLIPSYIRD----STVAVVVYDIT-NANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164 (355)
Q Consensus 90 ~D~~g~~~~~~~~~~~~~~----~d~ii~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (355)
|||||++.+...+..++.. +|++++|||++ ++.++..+..|+..+.....
T Consensus 96 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~------------------------- 150 (193)
T 2ged_A 96 VDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITE------------------------- 150 (193)
T ss_dssp EEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHH-------------------------
T ss_pred EECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhh-------------------------
Confidence 9999999998888888776 89999999999 88999988888877754210
Q ss_pred cccCccccccccccCCCccEEEEEeecCCCCcccc
Q psy15725 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ 199 (355)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~ 199 (355)
.....++|+++|+||+|+.+.+.
T Consensus 151 ------------~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 151 ------------SSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp ------------HHSTTCCCEEEEEECTTSTTCCC
T ss_pred ------------hccccCCCEEEEEEchHhcCCCC
Confidence 00224799999999999976543
No 145
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.72 E-value=5e-17 Score=149.51 Aligned_cols=88 Identities=19% Similarity=0.294 Sum_probs=67.1
Q ss_pred CcEEEEEEeCCCcc--cHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725 254 STVAVVVYDITNAN--SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 331 (355)
Q Consensus 254 ~~~vi~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv 331 (355)
++.+++|+|+++.. +++....|+..+.... .++|+++|+||+|+.....+ .+...++...+++++++||++|.||
T Consensus 247 ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~g~gi 323 (357)
T 2e87_A 247 GNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-KDLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALKGTGI 323 (357)
T ss_dssp CSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-TTSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTTTBTH
T ss_pred CCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-CCCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCCCcCH
Confidence 56677888877765 5666677777776643 27999999999998654433 3344555567789999999999999
Q ss_pred HHHHHHHHHHcCC
Q psy15725 332 KQLFRRVAAALPG 344 (355)
Q Consensus 332 ~~l~~~l~~~i~~ 344 (355)
++++++|.+.+..
T Consensus 324 ~~l~~~i~~~l~~ 336 (357)
T 2e87_A 324 DLVKEEIIKTLRP 336 (357)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988753
No 146
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.72 E-value=1.5e-17 Score=161.39 Aligned_cols=98 Identities=19% Similarity=0.242 Sum_probs=66.5
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeee------------e
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKT------------M 78 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~------------~ 78 (355)
.+..+|+++|++|+|||||+++|++..+....++ ..+++++..+.... .
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~g-------------------giT~~ig~~~~~~~~~~~~~~~~~~~~ 63 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAG-------------------GITQHIGATEIPMDVIEGICGDFLKKF 63 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC-----------------------CCCBTTEEEEEHHHHHHHSCGGGGGC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCC-------------------ceecccCeEEEeechhhhhcccccccc
Confidence 3457999999999999999999998543222111 11222332222111 0
Q ss_pred eecCcEEEEEEEecCCcccccccccccccCccEEEEEEECCC---cchhhhH
Q psy15725 79 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN---ANSFHQT 127 (355)
Q Consensus 79 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~ 127 (355)
..+.....+++|||||++.|...+...++.+|++|+|||+++ +++++.+
T Consensus 64 ~v~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l 115 (594)
T 1g7s_A 64 SIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEAL 115 (594)
T ss_dssp GGGGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH
T ss_pred ccccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH
Confidence 011122359999999999999999999999999999999999 4555443
No 147
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.72 E-value=7.4e-17 Score=160.14 Aligned_cols=115 Identities=18% Similarity=0.197 Sum_probs=71.8
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCc--cccccceeeeeeeeee-----cC
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT--YQATIGIDFLSKTMYL-----ED 82 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~t~~~~~~~~~~~~-----~~ 82 (355)
..+..+|+|+|+.|+|||||+++|+.....-.....+..+...+ +....+ ...|+.... ..+.+ ++
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~-----D~~~~E~~rgiTi~~~~--~~~~~~~~~~~~ 79 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATM-----DWMEQEQERGITITSAA--TTAFWSGMAKQY 79 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceee-----cChhhHHhcCceeeece--EEEEECCccccC
Confidence 34568999999999999999999986321100000111010000 111111 111222211 12222 23
Q ss_pred cEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHH
Q psy15725 83 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131 (355)
Q Consensus 83 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~ 131 (355)
....+++|||||+.+|...+..+++.+|++|+|+|+++..+.+....|.
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~ 128 (704)
T 2rdo_7 80 EPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR 128 (704)
T ss_pred CceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH
Confidence 3478999999999999999999999999999999999977666655553
No 148
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.72 E-value=2.1e-18 Score=164.89 Aligned_cols=95 Identities=14% Similarity=0.182 Sum_probs=68.4
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+..+|+++|++|+|||||+++|.+..+...+.| ++..++....+..+. ...+.+||
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~-----------------------giT~~i~~~~v~~~~-g~~i~~iD 58 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAG-----------------------GITQHIGAFLVSLPS-GEKITFLD 58 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSC-----------------------CBCCCTTSCCBCSSC-SSCCBCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-----------------------ceeEEEeEEEEEeCC-CCEEEEEE
Confidence 346899999999999999999998554333222 222222222222211 23688999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHH
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~ 130 (355)
|||++.|...+..+++.+|++++|||+++....+....|
T Consensus 59 TPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l 97 (537)
T 3izy_P 59 TPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESI 97 (537)
T ss_dssp CSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHH
T ss_pred CCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHH
Confidence 999999999999999999999999999997666554443
No 149
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.72 E-value=2.2e-17 Score=155.85 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=55.1
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725 252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 331 (355)
Q Consensus 252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv 331 (355)
..+|++++|+|.+++.+... ..++..+ .++|+++|+||+|+.....+.. ...+. .+++++++||++|.|+
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l-----~~~piivV~NK~Dl~~~~~~~~--~~~~~--~~~~~i~iSAktg~Gi 371 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQV-----KHRPLILVMNKIDLVEKQLITS--LEYPE--NITQIVHTAAAQKQGI 371 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHH-----TTSCEEEEEECTTSSCGGGSTT--CCCCT--TCCCEEEEBTTTTBSH
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhc-----cCCcEEEEEECCCCCcchhhHH--HHHhc--cCCcEEEEECCCCCCH
Confidence 44666777777666555433 2333333 2357888888888765443320 00001 3468999999999999
Q ss_pred HHHHHHHHHHcCCCC
Q psy15725 332 KQLFRRVAAALPGMD 346 (355)
Q Consensus 332 ~~l~~~l~~~i~~~~ 346 (355)
++++++|.+.+....
T Consensus 372 ~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 372 DSLETAILEIVQTGK 386 (462)
T ss_dssp HHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999987654
No 150
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.72 E-value=2.5e-19 Score=163.37 Aligned_cols=118 Identities=23% Similarity=0.192 Sum_probs=93.9
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCC----------CcccHHHHHHHHHHHHhhc-CCCceEEEEeeCC
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT----------NANSFHQTSKWIDDVRTER-GSDVIIMLVGNKT 296 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~ 296 (355)
..+.+.+||++|++.++.+|..++.+++++|+|+|++ +..++++...|++.+.+.. ..++|++|++||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 4688999999999999999999999999999999998 7889999889998887643 3689999999999
Q ss_pred CCCCccc--C-------------------CHHHHHHHHhh----------------cCcEEEEecCCCCCCHHHHHHHHH
Q psy15725 297 DLSDKRQ--V-------------------STEEGERKAKE----------------LNVMFIETSAKAGYNVKQLFRRVA 339 (355)
Q Consensus 297 Dl~~~~~--v-------------------~~~~~~~~~~~----------------~~~~~~~~SA~~~~gv~~l~~~l~ 339 (355)
|+.+.+. + ..+++..++.. ..+.+++|||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9853321 1 13455555322 235679999999999999999999
Q ss_pred HHcCCC
Q psy15725 340 AALPGM 345 (355)
Q Consensus 340 ~~i~~~ 345 (355)
+.|...
T Consensus 341 ~~I~~~ 346 (354)
T 2xtz_A 341 ETLRRR 346 (354)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988643
No 151
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.72 E-value=9.4e-17 Score=150.44 Aligned_cols=92 Identities=17% Similarity=0.183 Sum_probs=62.6
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCcccc--ccceeeeeeeeee-------
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA--TIGIDFLSKTMYL------- 80 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~------- 80 (355)
..+.++|+++|+.++|||||+++|++... +.+..+..+ |+...+....+..
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~--------------------~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y 66 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWT--------------------DTHSEELRRGITIKIGFADAEIRRCPNCGRY 66 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCC--------------------C--CGGGGSCSSSCCEEEEEEEEECTTTCCE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCcc--------------------ccChhhhcCCcEEEEeeeeeecccccccccc
Confidence 45679999999999999999999986321 111122222 2322222211110
Q ss_pred ------c--C----cEEEEEEEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725 81 ------E--D----RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121 (355)
Q Consensus 81 ------~--~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 121 (355)
+ + ....+.+|||||++.|...+...+..+|++|+|+|+++.
T Consensus 67 ~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g 119 (410)
T 1kk1_A 67 STSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEP 119 (410)
T ss_dssp ESSSBCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSC
T ss_pred cccccccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCC
Confidence 1 1 136899999999999988888888899999999999864
No 152
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.71 E-value=1.8e-16 Score=157.28 Aligned_cols=135 Identities=18% Similarity=0.148 Sum_probs=85.2
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCC-CCccccccceeeeeeeeeecCcEEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTVRLQ 88 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~ 88 (355)
.....+|+++|++|+|||||+++|+...........+..++.. ..+ ..+..+.+ +.......+......++
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~------~D~~~~e~~~gi--Ti~~~~~~~~~~~~~i~ 78 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQ------MDWMEQEQDRGI--TITSAATTAAWEGHRVN 78 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC---------------------------------CCSEEEEEETTEEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcee------cccchhhhhcCc--eEeeeeEEEEECCeeEE
Confidence 3456899999999999999999999632110000001000000 111 11111111 11111222233357899
Q ss_pred EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725 89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT 168 (355)
Q Consensus 89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (355)
+|||||+.+|...+..+++.+|++++|+|+++..+++....|.. +..
T Consensus 79 liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~-------------------------------- 125 (693)
T 2xex_A 79 IIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT-------------------------------- 125 (693)
T ss_dssp EECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH--------------------------------
T ss_pred EEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH--------------------------------
Confidence 99999999999999999999999999999999888777666643 322
Q ss_pred ccccccccccCCCccEEEEEeecCCCCcc
Q psy15725 169 SKWIDDVRTERGSDVIIMLVGNKTDLSDK 197 (355)
Q Consensus 169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~ 197 (355)
.++|+++|+||+|+...
T Consensus 126 ------------~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 126 ------------YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp ------------TTCCEEEEEECTTSTTC
T ss_pred ------------cCCCEEEEEECCCcccc
Confidence 27899999999998653
No 153
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.70 E-value=8.3e-16 Score=151.89 Aligned_cols=262 Identities=14% Similarity=0.076 Sum_probs=139.4
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCC-ccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
+..+|+++|+.|+|||||+++|++........+++..+... ..+.. +. ..++.+......+.+....+++|
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~------~d~~~~e~--~~giti~~~~~~~~~~~~~~nli 79 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTT------TDYTPEAK--LHRTTVRTGVAPLLFRGHRVFLL 79 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCS------SCCSHHHH--HTTSCCSCEEEEEEETTEEEEEE
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCccc------ccCCHHHH--hcCCeEEecceEEeeCCEEEEEE
Confidence 45789999999999999999999755432222222111000 00100 11 12233333344444456789999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
||||+.+|...+..+++.+|++++|+|+.+....+.. .++..+..
T Consensus 80 DTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~---------------------------------- 124 (665)
T 2dy1_A 80 DAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER---------------------------------- 124 (665)
T ss_dssp ECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH----------------------------------
T ss_pred eCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH----------------------------------
Confidence 9999999999999999999999999998876554433 33333332
Q ss_pred ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccC---eEEEEeeeeeccccceEEEEEEeCCCcccccccc
Q psy15725 171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN---VMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLI 247 (355)
Q Consensus 171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~---~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~ 247 (355)
.++|+++++||+|+. .. ......++...++ .....+++ +.+. ..+.|......+
T Consensus 125 ----------~~ip~ilv~NKiD~~-~~--~~~~~~~l~~~l~~~~~~~~Pi~~--~~~~----~g~~d~~~~~~~---- 181 (665)
T 2dy1_A 125 ----------LGLPRMVVVTKLDKG-GD--YYALLEDLRSTLGPILPIDLPLYE--GGKW----VGLIDVFHGKAY---- 181 (665)
T ss_dssp ----------TTCCEEEEEECGGGC-CC--HHHHHHHHHHHHCSEEECEEEEEE--TTEE----EEEEETTTTEEE----
T ss_pred ----------ccCCEEEEecCCchh-hh--HHHHHHHHHHHhCCcceEEeeecC--CCcc----cchhhhhhhhee----
Confidence 278999999999986 22 2333444444433 11233333 2222 223333221111
Q ss_pred cccccCCcEEEEEEeCCCcccHH-HHHHHHHHHHhhcCC-Cce-EEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEec
Q psy15725 248 PSYIRDSTVAVVVYDITNANSFH-QTSKWIDDVRTERGS-DVI-IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETS 324 (355)
Q Consensus 248 ~~~~~~~~~vi~v~d~~~~~s~~-~~~~~~~~i~~~~~~-~~p-iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 324 (355)
++... . .-..+. +..+. ....+...+.+...+ +-. +--.+...++ +.+.+.............+|++++|
T Consensus 182 --~~~~g-~-~~~~~~--~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l-~~~~~~~~~~~~~~~~~~~pv~~~S 254 (665)
T 2dy1_A 182 --RYENG-E-EREAEV--PPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEV-TGEALEKAFHEAVRRGLLYPVALAS 254 (665)
T ss_dssp --EEETT-E-EEEECC--CGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-CHHHHHHHHHHHHHTTSCEEEEECB
T ss_pred --ecCCC-c-eeEecC--CHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCC-CHHHHHHHHHHHHHhCCeeEEEEee
Confidence 11111 1 111222 22222 223333333322100 000 0000000011 1111111222223333447999999
Q ss_pred CCCCCCHHHHHHHHHHHcCCCC
Q psy15725 325 AKAGYNVKQLFRRVAAALPGMD 346 (355)
Q Consensus 325 A~~~~gv~~l~~~l~~~i~~~~ 346 (355)
|++|.||+++|++|.+.+|.+.
T Consensus 255 A~~~~Gv~~Ll~~i~~~lp~p~ 276 (665)
T 2dy1_A 255 GEREIGVLPLLELILEALPSPT 276 (665)
T ss_dssp TTTTBSHHHHHHHHHHHSCCHH
T ss_pred cccCcCHHHHHHHHHHhCCCcc
Confidence 9999999999999999999764
No 154
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.70 E-value=2e-17 Score=156.20 Aligned_cols=151 Identities=19% Similarity=0.181 Sum_probs=101.2
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
..+||+++|++|||||||+|+|++...... + ..+++..+.....+..++. .+.+||
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~---------------------~-~~~gtT~d~~~~~~~~~~~--~~~l~D 229 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIV---------------------S-NVAGTTRDAVDTSFTYNQQ--EFVIVD 229 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEE---------------------C----------CCEEEEETTE--EEEETT
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceee---------------------c-CCCCceeeeeEEEEEECCe--EEEEEE
Confidence 468999999999999999999998543100 0 1112222333334444443 589999
Q ss_pred cCCcc----------ccccccc-ccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccccccc
Q psy15725 92 TAGQE----------RFRSLIP-SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFH 160 (355)
Q Consensus 92 ~~g~~----------~~~~~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
|||+. .|..++. .+++.+|++++|+|++++.+++.. .|...+..
T Consensus 230 T~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~------------------------ 284 (436)
T 2hjg_A 230 TAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE------------------------ 284 (436)
T ss_dssp HHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH------------------------
T ss_pred CCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH------------------------
Confidence 99983 3333332 467889999999999998888775 46655542
Q ss_pred ccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhh-----hhhhhccCeEEEEeeeeeccccceEE
Q psy15725 161 HANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEG-----ERKAKELNVMFIETSAKAGYNVKQVR 231 (355)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~-----~~~~~~~~~~~~~~sa~~~~~v~~i~ 231 (355)
.+.|+++|+||+|+.+.+....++. ..+....+.+++++|+.++.+++.++
T Consensus 285 --------------------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~ 340 (436)
T 2hjg_A 285 --------------------AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLM 340 (436)
T ss_dssp --------------------TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHH
T ss_pred --------------------cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHH
Confidence 2799999999999876544332222 22333346799999999999988754
No 155
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.69 E-value=9.8e-17 Score=142.20 Aligned_cols=88 Identities=10% Similarity=0.120 Sum_probs=49.7
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCH--HHHHHHHhhcCcEEEEecCCCCCC
Q psy15725 253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST--EEGERKAKELNVMFIETSAKAGYN 330 (355)
Q Consensus 253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~~~~~~~~~SA~~~~g 330 (355)
.+|+++++++.+...-......+++.+.. ++|+++|+||+|+.+...... ..........+++++++||+++.|
T Consensus 115 r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~ 190 (274)
T 3t5d_A 115 RVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEE 190 (274)
T ss_dssp CCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-------
T ss_pred ceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChh
Confidence 36788888866543221222234444433 799999999999865433221 223344456788999999999999
Q ss_pred HHHHHHHHHHHcCC
Q psy15725 331 VKQLFRRVAAALPG 344 (355)
Q Consensus 331 v~~l~~~l~~~i~~ 344 (355)
+++++++|.+.+|-
T Consensus 191 ~~~l~~~l~~~~p~ 204 (274)
T 3t5d_A 191 ENKLVKKIKDRLPL 204 (274)
T ss_dssp ----CHHHHHTCSE
T ss_pred HHHHHHHHhcCCCc
Confidence 99999999998873
No 156
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.69 E-value=4.7e-17 Score=156.93 Aligned_cols=163 Identities=15% Similarity=0.110 Sum_probs=102.8
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+.-||+|+|+.++|||||..+|+...-.-...+.+.+++..-.+++ +....+.. .|++.......+.+++..++++
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~-D~~~~Ere--RGITI~s~~~~~~~~~~~iNlI 105 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATS-DWMAMERE--RGISVTTSVMQFPYRDRVVNLL 105 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC-----------------------CTTTEEEEEETTEEEEEE
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCcccccccc-CChHHHHH--CCCcEeeceEEEEECCEEEEEE
Confidence 46789999999999999999999874321111111111111100111 11122222 2344444555566677899999
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
||||+.+|.......++.+|++|+|+|+.+.-..+...-|....+
T Consensus 106 DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~----------------------------------- 150 (548)
T 3vqt_A 106 DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM----------------------------------- 150 (548)
T ss_dssp CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH-----------------------------------
T ss_pred eCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH-----------------------------------
Confidence 999999999999999999999999999999877777777754433
Q ss_pred ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeee
Q psy15725 171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA 223 (355)
Q Consensus 171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~ 223 (355)
.++|+++++||.|..... ......++...++.....+....
T Consensus 151 ----------~~lp~i~fINK~Dr~~ad--~~~~~~~i~~~l~~~~~p~~~Pi 191 (548)
T 3vqt_A 151 ----------RATPVMTFVNKMDREALH--PLDVMADIEQHLQIECAPMTWPI 191 (548)
T ss_dssp ----------TTCCEEEEEECTTSCCCC--HHHHHHHHHHHHTSEEEESEEEE
T ss_pred ----------hCCceEEEEecccchhcc--hhHhhhhhhhhcCCceEeEEeee
Confidence 389999999999986543 12333344445555555554443
No 157
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.69 E-value=8.9e-17 Score=149.83 Aligned_cols=108 Identities=11% Similarity=0.067 Sum_probs=67.3
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+.+||+++|+.++|||||+++|++..... +...+......+....+... +.+.......++.....+.+||
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~-------g~~~~~~~~~~d~~~~e~~~--giTi~~~~~~~~~~~~~~~iiD 72 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEG-------GGAKFKKYEEIDNAPEERAR--GITINAAHVEYSTAARHYAHTD 72 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHT-------TSBCCCCHHHHHSCCEEEET--TEEEECEEEEEECSSCEEEEEE
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhc-------CccccchhhhhhcCHHHHhc--CcEEEeeeEEeccCCeEEEEEE
Confidence 46899999999999999999998742000 00000000000011111111 2222222333444556899999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHH
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 128 (355)
|||+++|...+..+++.+|++|+|+|+++....+...
T Consensus 73 tpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e 109 (397)
T 1d2e_A 73 CPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTRE 109 (397)
T ss_dssp CSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHH
T ss_pred CCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHH
Confidence 9999999888888899999999999999865444333
No 158
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.69 E-value=1.1e-18 Score=157.36 Aligned_cols=117 Identities=21% Similarity=0.297 Sum_probs=95.5
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCC----------CcccHHHHHHHHHHHHhhc-CCCceEEEEeeCC
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT----------NANSFHQTSKWIDDVRTER-GSDVIIMLVGNKT 296 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~ 296 (355)
+.+.+.+||++|++.++.+|..++.+++++|+|+|++ +..++++...|+..+.... ..++|++|++||+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 4578999999999999999999999999999999998 7788888888888876643 3789999999999
Q ss_pred CCCCcc---------------cCCHHHHHHHHhh---------------------------cCcEEEEecCCCCCCHHHH
Q psy15725 297 DLSDKR---------------QVSTEEGERKAKE---------------------------LNVMFIETSAKAGYNVKQL 334 (355)
Q Consensus 297 Dl~~~~---------------~v~~~~~~~~~~~---------------------------~~~~~~~~SA~~~~gv~~l 334 (355)
|+...+ ....+++..++.. ..+.++++||+++.||+.+
T Consensus 239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v 318 (340)
T 4fid_A 239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV 318 (340)
T ss_dssp HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence 984321 1234555444322 2378999999999999999
Q ss_pred HHHHHHHcCC
Q psy15725 335 FRRVAAALPG 344 (355)
Q Consensus 335 ~~~l~~~i~~ 344 (355)
|+.+.+.|..
T Consensus 319 F~~v~~~Il~ 328 (340)
T 4fid_A 319 FMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 159
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.68 E-value=2.3e-17 Score=139.11 Aligned_cols=118 Identities=41% Similarity=0.678 Sum_probs=96.8
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE 307 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~ 307 (355)
..+.+.+||++|++.+..++..++..+|++++|+|+++..+++.+..|+..+......++|+++|+||+|+.+.+.+...
T Consensus 80 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~ 159 (199)
T 3l0i_B 80 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYT 159 (199)
T ss_dssp EEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSC
T ss_pred EEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHH
Confidence 45788999999999999999999999999999999999999999999999997766568999999999999877777666
Q ss_pred HHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 308 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 308 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
+...+++..+++++++||++|.||+++|++|.+.+.++
T Consensus 160 ~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 160 TAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 197 (199)
T ss_dssp C-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTTTT
T ss_pred HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 77778888889999999999999999999999988754
No 160
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.68 E-value=6.5e-17 Score=151.29 Aligned_cols=116 Identities=14% Similarity=0.118 Sum_probs=70.7
Q ss_pred CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeec-ccCCCCCccccccceeeeeeeeeecCcEEEE
Q psy15725 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRF-MYDSFDNTYQATIGIDFLSKTMYLEDRTVRL 87 (355)
Q Consensus 9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 87 (355)
...+.++|+++|++|+|||||+++|++........ ..+. .+ ..+....+ .+.+.++......++.....+
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~------~~~~-~~~~~d~~~~e--~~~GiTi~~~~~~~~~~~~~~ 77 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPN------VEVK-DYGDIDKAPEE--RARGITINTAHVEYETAKRHY 77 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTT------SCCC-CHHHHSCSHHH--HHHTCCCSCEEEEEECSSCEE
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCcc------cccc-chhhccCCHHH--HHcCCCEEeeeeEeccCCeEE
Confidence 34567999999999999999999998731000000 0000 00 00001111 122222222333444455689
Q ss_pred EEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725 88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134 (355)
Q Consensus 88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 134 (355)
.+|||||+++|...+..+++.+|++|+|+|+++....+ ...|+..+
T Consensus 78 ~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~ 123 (405)
T 2c78_A 78 SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLA 123 (405)
T ss_dssp EEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHH
T ss_pred EEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHH
Confidence 99999999999888888899999999999998865433 33444444
No 161
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.68 E-value=4.2e-17 Score=155.83 Aligned_cols=179 Identities=18% Similarity=0.231 Sum_probs=99.4
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcC--CCCCceeee------ecccceeeecccCCCCCccccccceeeeeeeeeecC
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDS--FDNTYQATI------VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED 82 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~--~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 82 (355)
.+.+||+++|++|+|||||+++|++.. +...+.+++ .|+..+...+..+....+..+ |+++......++.
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~--GiTi~~~~~~~~~ 108 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERER--GVTVSICTSHFST 108 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------C--CSSCCCCEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhc--CcceEeeeEEEec
Confidence 356999999999999999999998762 111111110 111111111111112222222 2233333334445
Q ss_pred cEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhH--HHHHHHHhhhcCCceEEeecccccccccccccc
Q psy15725 83 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT--SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFH 160 (355)
Q Consensus 83 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
....+.+|||||+++|...+..+++.+|++|+|||+++..++..+ ..+..+.....
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~---------------------- 166 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA---------------------- 166 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHH----------------------
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHH----------------------
Confidence 567899999999999999999999999999999999997554321 11111111000
Q ss_pred ccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhh----hhhhcc-----CeEEEEeeeeeccccceE
Q psy15725 161 HANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGE----RKAKEL-----NVMFIETSAKAGYNVKQV 230 (355)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~----~~~~~~-----~~~~~~~sa~~~~~v~~i 230 (355)
......|+++|+||+|+.+.+....++.. .+.... ..+++++|+.++.|+.++
T Consensus 167 -----------------~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 167 -----------------SSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp -----------------HHTTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred -----------------HHcCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 00112469999999998653322222222 222211 578999999999988753
No 162
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.67 E-value=5e-17 Score=154.34 Aligned_cols=154 Identities=20% Similarity=0.213 Sum_probs=103.4
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
...+||+++|++|||||||+|+|++..... . ...+++..+.....+..++ ..+.+|
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~---------------------~-~~~~gtt~~~~~~~~~~~~--~~~~l~ 248 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVI---------------------V-SNVAGTTRDAVDTSFTYNQ--QEFVIV 248 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEE---------------------E-CC------CTTSEEEEETT--EEEEET
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccc---------------------c-CCCCCeEEEEEEEEEEECC--ceEEEE
Confidence 457899999999999999999999743100 0 0111222233333344444 378999
Q ss_pred ecCC----------ccccccccc-ccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccc
Q psy15725 91 DTAG----------QERFRSLIP-SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSF 159 (355)
Q Consensus 91 D~~g----------~~~~~~~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
|||| ++.|...+. .+++.+|++++|+|+++..+ +....|...+..
T Consensus 249 DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~----------------------- 304 (456)
T 4dcu_A 249 DTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE----------------------- 304 (456)
T ss_dssp TGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH-----------------------
T ss_pred ECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH-----------------------
Confidence 9999 566655554 36789999999999998543 223345444432
Q ss_pred cccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhcc-----CeEEEEeeeeeccccceEEEE
Q psy15725 160 HHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL-----NVMFIETSAKAGYNVKQVRLQ 233 (355)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~-----~~~~~~~sa~~~~~v~~i~~~ 233 (355)
.++|+++|+||+|+.+.+....++..+.+... ..+++++||.++.++++++..
T Consensus 305 ---------------------~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~ 362 (456)
T 4dcu_A 305 ---------------------AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPA 362 (456)
T ss_dssp ---------------------TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHH
T ss_pred ---------------------cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHH
Confidence 27999999999999766555555544444432 579999999999998876543
No 163
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.66 E-value=3.8e-16 Score=136.13 Aligned_cols=60 Identities=15% Similarity=0.115 Sum_probs=38.9
Q ss_pred CceEEEEeeCCCCCCccc------CCHHHHHHHHhhcCcEEEEecCCC-----CCCHHHHHHHHHHHcCCC
Q psy15725 286 DVIIMLVGNKTDLSDKRQ------VSTEEGERKAKELNVMFIETSAKA-----GYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 286 ~~piilv~nK~Dl~~~~~------v~~~~~~~~~~~~~~~~~~~SA~~-----~~gv~~l~~~l~~~i~~~ 345 (355)
+.|++++.||+|+..... ........+.+.++.+++..++.. +.||++|++.|.+.+...
T Consensus 139 ~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 139 KWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp GGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 567777777777743210 011234556666776666665543 689999999999988753
No 164
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.66 E-value=2.4e-16 Score=144.98 Aligned_cols=86 Identities=14% Similarity=0.145 Sum_probs=62.1
Q ss_pred EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 94 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 94 (355)
+|+++|++++|||||+++|+. . ..|+...+ .. +......+.+|||||
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~------~-----------------------giTi~~~~--~~--~~~~~~~i~iiDtPG 69 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK------K-----------------------GTSSDITM--YN--NDKEGRNMVFVDAHS 69 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE------E-----------------------EEESSSEE--EE--ECSSSSEEEEEECTT
T ss_pred EEEEECCCCCCHHHHHHHHHh------C-----------------------CEEEEeeE--EE--EecCCeEEEEEECCC
Confidence 999999999999999999972 0 11222222 12 233345699999999
Q ss_pred cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725 95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 135 (355)
Q Consensus 95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 135 (355)
+++|...+...++.+|++++|+| ++ ..+.+...|...+.
T Consensus 70 h~~f~~~~~~~~~~aD~ailVvd-~~-g~~~qt~e~~~~~~ 108 (370)
T 2elf_A 70 YPKTLKSLITALNISDIAVLCIP-PQ-GLDAHTGECIIALD 108 (370)
T ss_dssp TTTCHHHHHHHHHTCSEEEEEEC-TT-CCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCEEEEEEc-CC-CCcHHHHHHHHHHH
Confidence 99998888888999999999999 43 34445555555443
No 165
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.66 E-value=3.5e-16 Score=147.48 Aligned_cols=179 Identities=15% Similarity=0.197 Sum_probs=107.2
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCcee--ee------ecccceeeecccCCCCCccccccceeeeeeeeeec
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQA--TI------VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE 81 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 81 (355)
..+.++|+++|++++|||||+++|++..-.-.... .+ .++..+-..+..+....+..+++..+.....+.
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~-- 91 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE-- 91 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe--
Confidence 34679999999999999999999976431110000 00 011111111112333333334455554444443
Q ss_pred CcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcch---hhhHHHHHHHHhhhcCCceEEeecccccccccccc
Q psy15725 82 DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS---FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLS 158 (355)
Q Consensus 82 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (355)
.....+.+|||||+++|...+...++.+|++|+|+|+++... |+....+.+.+...
T Consensus 92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~--------------------- 150 (439)
T 3j2k_7 92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA--------------------- 150 (439)
T ss_pred cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHH---------------------
Confidence 344589999999999999999999999999999999998532 22111111111110
Q ss_pred ccccCccccCccccccccccCCCccE-EEEEeecCCCCccc------ceehhhhhhhhhcc------CeEEEEeeeeecc
Q psy15725 159 FHHANSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKR------QVSTEEGERKAKEL------NVMFIETSAKAGY 225 (355)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~------~v~~~~~~~~~~~~------~~~~~~~sa~~~~ 225 (355)
...++| +++++||+|+.... .....+...+.... ..+++.+|+.++.
T Consensus 151 --------------------~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ 210 (439)
T 3j2k_7 151 --------------------KTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGA 210 (439)
T ss_pred --------------------HHcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCc
Confidence 012566 99999999985321 01112222333332 4579999999999
Q ss_pred ccceEE
Q psy15725 226 NVKQVR 231 (355)
Q Consensus 226 ~v~~i~ 231 (355)
|+..+.
T Consensus 211 ni~~l~ 216 (439)
T 3j2k_7 211 NLKEQS 216 (439)
T ss_pred cccccc
Confidence 988743
No 166
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.64 E-value=5.3e-16 Score=134.66 Aligned_cols=92 Identities=13% Similarity=0.125 Sum_probs=58.6
Q ss_pred CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ 88 (355)
Q Consensus 9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 88 (355)
.....+||+++|++|||||||+|+|++..+.....+. .++........+.+++ ..+.
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~---------------------~~~t~~~~~~~~~~~~--~~i~ 81 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAA---------------------KSITKKCEKRSSSWKE--TELV 81 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC----------------------------CCSCEEEEEEETT--EEEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCC---------------------CceeeeEEEEEEEeCC--ceEE
Confidence 3456799999999999999999999996543322111 0122222233333333 4789
Q ss_pred EEecCCcc-----------cccccccccccCccEEEEEEECCCcch
Q psy15725 89 LWDTAGQE-----------RFRSLIPSYIRDSTVAVVVYDITNANS 123 (355)
Q Consensus 89 i~D~~g~~-----------~~~~~~~~~~~~~d~ii~v~d~~~~~s 123 (355)
+|||||.. .+.......++.+|++++|+|+++...
T Consensus 82 liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~ 127 (239)
T 3lxx_A 82 VVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTE 127 (239)
T ss_dssp EEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSS
T ss_pred EEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCH
Confidence 99999943 344445555678899999999986433
No 167
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.63 E-value=2.2e-15 Score=138.29 Aligned_cols=93 Identities=20% Similarity=0.114 Sum_probs=55.5
Q ss_pred CcEEEEEEeCCCcc--cHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCccc-CCHHHHHHHHhhc---CcEEEEecCCC
Q psy15725 254 STVAVVVYDITNAN--SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ-VSTEEGERKAKEL---NVMFIETSAKA 327 (355)
Q Consensus 254 ~~~vi~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-v~~~~~~~~~~~~---~~~~~~~SA~~ 327 (355)
+|.+++|+|++++. ..+.+..|.+.+......++|+++|+||+|+.+... .....+..++... +.+++++||++
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~ 337 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK 337 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence 45556666665544 233333344334333335678888888888754321 0001121222332 34789999999
Q ss_pred CCCHHHHHHHHHHHcCCCC
Q psy15725 328 GYNVKQLFRRVAAALPGMD 346 (355)
Q Consensus 328 ~~gv~~l~~~l~~~i~~~~ 346 (355)
+.|+++++++|.+.+....
T Consensus 338 g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 338 RTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp TBSHHHHHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHhcccC
Confidence 9999999999998876543
No 168
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.63 E-value=7.2e-16 Score=156.35 Aligned_cols=106 Identities=14% Similarity=0.095 Sum_probs=65.8
Q ss_pred CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeec-ccCCCCCccccccceeeeeeeeeecCcEEEE
Q psy15725 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRF-MYDSFDNTYQATIGIDFLSKTMYLEDRTVRL 87 (355)
Q Consensus 9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 87 (355)
...+.++|+++|+.++|||||+++|++..... +...+. .+ ..+.... ..+.|+++......++.....+
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~-------G~a~f~-~~a~lD~~~~--ErerGITIdva~v~f~~~~~kI 361 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKT-------YGGAAR-AFDQIDNAPE--EKARGITINTSHVEYDTPTRHY 361 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHH-------SCC------------------------CCSCEEEECSSCEE
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccc-------cccccc-cccccccccc--cccCceeEEEEEEEEcCCCEEE
Confidence 34567999999999999999999998741000 000000 00 0000111 1223333333334455556789
Q ss_pred EEEecCCcccccccccccccCccEEEEEEECCCcchh
Q psy15725 88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 124 (355)
Q Consensus 88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~ 124 (355)
.+|||||+++|...+...++.+|++|+|||+++....
T Consensus 362 ~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~ 398 (1289)
T 3avx_A 362 AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP 398 (1289)
T ss_dssp EEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCT
T ss_pred EEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcH
Confidence 9999999999988888889999999999999886433
No 169
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.63 E-value=1e-15 Score=144.40 Aligned_cols=174 Identities=20% Similarity=0.227 Sum_probs=102.2
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCC--CCCceeeee------ccc--ceeeecccCCCCCccccccceeeeeeeeee
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSF--DNTYQATIV------GKT--SLITRFMYDSFDNTYQATIGIDFLSKTMYL 80 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~--~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 80 (355)
.+.+||+++|+.++|||||+++|++... .......+. +.+ .+-.....+....+....+..+. ....+
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~--~~~~~ 99 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDV--AYRYF 99 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCC--EEEEE
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEe--eeeEe
Confidence 4569999999999999999999998641 111000000 000 00000000000011111222221 12223
Q ss_pred cCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccccccc
Q psy15725 81 EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFH 160 (355)
Q Consensus 81 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
......+.+|||||+++|...+..++..+|++|+|+|+++....+ ...|+..+...
T Consensus 100 ~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~----------------------- 155 (434)
T 1zun_B 100 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL----------------------- 155 (434)
T ss_dssp ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT-----------------------
T ss_pred ecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc-----------------------
Confidence 344568999999999999988888999999999999999865333 23333333221
Q ss_pred ccCccccCccccccccccCCCccEEEEEeecCCCCccc--ce--ehhhhhhhhhccC-----eEEEEeeeeeccccceE
Q psy15725 161 HANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR--QV--STEEGERKAKELN-----VMFIETSAKAGYNVKQV 230 (355)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~v--~~~~~~~~~~~~~-----~~~~~~sa~~~~~v~~i 230 (355)
.-.|+++|+||+|+.+.. .. ...+...++...+ .+++++|+.++.++..+
T Consensus 156 --------------------~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 156 --------------------GIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp --------------------TCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred --------------------CCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 123699999999996521 11 1233445555555 78999999999987753
No 170
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.62 E-value=1.3e-16 Score=150.54 Aligned_cols=179 Identities=17% Similarity=0.290 Sum_probs=103.4
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhc--CCCCCceeee------ecccceeeecccCCCCCccccccceeeeeeeeeecCc
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYD--SFDNTYQATI------VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 83 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~--~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 83 (355)
+.+||+++|+.|+|||||+++|++. .+.......+ .|...+-.....+....+..+.+..+... ..++..
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~--~~~~~~ 82 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTF--MRFETK 82 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------CEEECS
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeE--EEEecC
Confidence 5689999999999999999999874 2221100000 00000000000000011111222222222 223444
Q ss_pred EEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccC
Q psy15725 84 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHAN 163 (355)
Q Consensus 84 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (355)
...+.+|||||+++|...+..+++.+|++|+|||+++ .+|+....|..+.+...
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~------------------------- 136 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHI------------------------- 136 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHH-------------------------
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHH-------------------------
Confidence 5689999999999999999999999999999999999 67776554443332210
Q ss_pred ccccCccccccccccCCCcc-EEEEEeecCCCCccc------ceehhhhhhhhhccC-----eEEEEeeeeeccccceE
Q psy15725 164 SFHQTSKWIDDVRTERGSDV-IIMLVGNKTDLSDKR------QVSTEEGERKAKELN-----VMFIETSAKAGYNVKQV 230 (355)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~-piilv~nK~D~~~~~------~v~~~~~~~~~~~~~-----~~~~~~sa~~~~~v~~i 230 (355)
......++ |+++++||+|+.+.. .....+...++...+ .+++++|+.++.++.+.
T Consensus 137 ------------~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 137 ------------ILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp ------------HHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred ------------HHHHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 00001133 589999999986521 111233444444443 68999999999887643
No 171
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.62 E-value=2.1e-15 Score=132.73 Aligned_cols=102 Identities=14% Similarity=0.211 Sum_probs=68.3
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
.+.++|+++|++|||||||+|+|++...... ..+.++ ........+.. ....+.+|
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~---------------------~~~~~~-t~~~~~~~~~~--~~~~l~li 89 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRV---------------------SPFQAE-GLRPVMVSRTM--GGFTINII 89 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCC---------------------CSSCC--CCCCEEEEEEE--TTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCccc---------------------CCCCCc-ceeeEEEEEEE--CCeeEEEE
Confidence 4679999999999999999999998653111 111111 11112222223 33589999
Q ss_pred ecCCccccccccccccc---------CccEEEEEEECCCcchhhhH-HHHHHHHhhh
Q psy15725 91 DTAGQERFRSLIPSYIR---------DSTVAVVVYDITNANSFHQT-SKWIDDVRTE 137 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~---------~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~ 137 (355)
||||+.++......+++ .+|++++|++++... +... ..|++.+...
T Consensus 90 DTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~ 145 (262)
T 3def_A 90 DTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQT 145 (262)
T ss_dssp ECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHH
T ss_pred ECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHH
Confidence 99999888766555554 789999999998755 5443 4677777643
No 172
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.62 E-value=9.4e-16 Score=127.08 Aligned_cols=112 Identities=21% Similarity=0.282 Sum_probs=91.6
Q ss_pred eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcccCCHH
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTE 307 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~ 307 (355)
...+.+||++|.+.+..++..++..+|++++|+|+++..+++.+..|+..+.... ..++|+++|+||+|+.+. ....
T Consensus 64 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~ 141 (181)
T 2h17_A 64 NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVA 141 (181)
T ss_dssp TEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHH
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHH
Confidence 4778999999999999999999999999999999999999999988888876542 268999999999999643 2233
Q ss_pred HHHHHH-----hhcCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725 308 EGERKA-----KELNVMFIETSAKAGYNVKQLFRRVAAAL 342 (355)
Q Consensus 308 ~~~~~~-----~~~~~~~~~~SA~~~~gv~~l~~~l~~~i 342 (355)
+..... ...+++++++||++|.||+++|++|.+.+
T Consensus 142 ~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l 181 (181)
T 2h17_A 142 EISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 181 (181)
T ss_dssp HHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC-
T ss_pred HHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhhC
Confidence 333322 23457999999999999999999998653
No 173
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.62 E-value=3.6e-16 Score=148.55 Aligned_cols=178 Identities=17% Similarity=0.250 Sum_probs=90.5
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcC--CCCC----cee--eeecccceeeecccCCCCCccccccceeeeeeeeeecC
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDS--FDNT----YQA--TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED 82 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~--~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 82 (355)
.+.++|+++|+.++|||||+++|+... +... +.. ...|.+.+...+..+....+....+.++.....+..
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-- 118 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-- 118 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC--
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec--
Confidence 356899999999999999999998632 2110 000 000111111011111111111122222222223333
Q ss_pred cEEEEEEEecCCcccccccccccccCccEEEEEEECCCc---chhhhHHHHHHHHhhhcCCceEEeeccccccccccccc
Q psy15725 83 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA---NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSF 159 (355)
Q Consensus 83 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
....+.+|||||+++|...+...++.+|++|+|||+++. .+|+...+|.+.+...
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~---------------------- 176 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA---------------------- 176 (467)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH----------------------
T ss_pred CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHH----------------------
Confidence 346899999999999999999999999999999999986 4555433343333211
Q ss_pred cccCccccCccccccccccCCCccE-EEEEeecCCCCccc------ceehhhhhhhhhcc-------CeEEEEeeeeecc
Q psy15725 160 HHANSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKR------QVSTEEGERKAKEL-------NVMFIETSAKAGY 225 (355)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~------~v~~~~~~~~~~~~-------~~~~~~~sa~~~~ 225 (355)
...++| +++++||+|+.... .....+...+.... ..+++++|+.++.
T Consensus 177 -------------------~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~ 237 (467)
T 1r5b_A 177 -------------------RTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQ 237 (467)
T ss_dssp -------------------HHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTB
T ss_pred -------------------HHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccc
Confidence 012677 99999999985411 11112333444333 4689999999999
Q ss_pred ccceEE
Q psy15725 226 NVKQVR 231 (355)
Q Consensus 226 ~v~~i~ 231 (355)
++..++
T Consensus 238 ~i~~l~ 243 (467)
T 1r5b_A 238 NVKDRV 243 (467)
T ss_dssp TTSSCC
T ss_pred cccccc
Confidence 987643
No 174
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.61 E-value=6.1e-16 Score=151.07 Aligned_cols=178 Identities=18% Similarity=0.229 Sum_probs=101.7
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCce--ee------eecccceeeecccCCCCCccccccceeeeeeeeeecC
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQ--AT------IVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED 82 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 82 (355)
.+.+||+++|++|+|||||+++|++....-... .. -.|+..+-..+..+.......+ |+++......+..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~--GiTid~~~~~~~~ 242 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERER--GVTVSICTSHFST 242 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHT--TTCCSCSCCEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhC--CeeEeeeeEEEec
Confidence 457999999999999999999999753211100 00 0000000000000000011112 2222223333444
Q ss_pred cEEEEEEEecCCcccccccccccccCccEEEEEEECCCcc---hhhhHHHHHHHHhhhcCCceEEeeccccccccccccc
Q psy15725 83 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN---SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSF 159 (355)
Q Consensus 83 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
....+.+|||||+++|...+..+++.+|++|+|+|+++.. +|.....+.+.+....
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~--------------------- 301 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS--------------------- 301 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHH---------------------
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHH---------------------
Confidence 5568999999999999999999999999999999998742 2211111111111110
Q ss_pred cccCccccCccccccccccCCCccEEEEEeecCCCCcccceeh----hhhhhhhhcc-----CeEEEEeeeeeccccceE
Q psy15725 160 HHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST----EEGERKAKEL-----NVMFIETSAKAGYNVKQV 230 (355)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~----~~~~~~~~~~-----~~~~~~~sa~~~~~v~~i 230 (355)
...-.|+++|+||+|+.+...... .+...+.... ..+++.+|+.++.|+..+
T Consensus 302 -------------------~lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 302 -------------------SLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp -------------------TTTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred -------------------HcCCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 011246999999999875322111 1222222222 468999999999998754
No 175
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.61 E-value=5.9e-16 Score=146.79 Aligned_cols=149 Identities=19% Similarity=0.232 Sum_probs=97.5
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+..+|+++|+.++|||||+++|....+...+.+ ++..+.....+..++ ..+.+||
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~-----------------------GIT~~i~~~~v~~~~--~~i~~iD 57 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAG-----------------------GITQHIGAYHVETEN--GMITFLD 57 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBC-----------------------CCCCCSSCCCCCTTS--SCCCEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCC-----------------------CeeEeEEEEEEEECC--EEEEEEE
Confidence 456899999999999999999988543322211 111111111122222 3688999
Q ss_pred cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725 92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW 171 (355)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (355)
|||++.|...+...+..+|++++|||+++....+....|. .+..
T Consensus 58 TPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~-~~~~----------------------------------- 101 (501)
T 1zo1_I 58 TPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQ-HAKA----------------------------------- 101 (501)
T ss_dssp CCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHH-HHHH-----------------------------------
T ss_pred CCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHH-HHHh-----------------------------------
Confidence 9999999999999999999999999998854333333221 2211
Q ss_pred cccccccCCCccEEEEEeecCCCCccc--ceehh--hhhhhhhccC--eEEEEeeeeeccccceE
Q psy15725 172 IDDVRTERGSDVIIMLVGNKTDLSDKR--QVSTE--EGERKAKELN--VMFIETSAKAGYNVKQV 230 (355)
Q Consensus 172 ~~~~~~~~~~~~piilv~nK~D~~~~~--~v~~~--~~~~~~~~~~--~~~~~~sa~~~~~v~~i 230 (355)
.++|+++++||+|+.+.. .+... +...++..++ .+++++|+.++.+++.+
T Consensus 102 ---------~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eL 157 (501)
T 1zo1_I 102 ---------AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDEL 157 (501)
T ss_dssp ---------TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTH
T ss_pred ---------cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchh
Confidence 278999999999986421 11111 1111222232 68999999999887654
No 176
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.61 E-value=2.5e-16 Score=144.72 Aligned_cols=155 Identities=18% Similarity=0.291 Sum_probs=85.7
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCC-CCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
..++|+|+|++|+|||||+++|++... ...+.+. ......+|++..+....+..++....+.+|
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~---------------~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~ 100 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPG---------------AAEKIERTVQIEASTVEIEERGVKLRLTVV 100 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC------------------------------CEEEEEEEEC----CEEEEEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccC---------------CCcccCCceeEEEEEEEeecCCcccceEEE
Confidence 458999999999999999999876432 1111110 011123455555544444455566789999
Q ss_pred ecCCc-------cccccccc-------ccccCccEE-----------EEEEECCC-cchhhhHH-HHHHHHhhhcCCceE
Q psy15725 91 DTAGQ-------ERFRSLIP-------SYIRDSTVA-----------VVVYDITN-ANSFHQTS-KWIDDVRTERGSDVI 143 (355)
Q Consensus 91 D~~g~-------~~~~~~~~-------~~~~~~d~i-----------i~v~d~~~-~~s~~~~~-~~~~~~~~~~~~~~~ 143 (355)
||||. +.|..++. .+++.++++ +++|++++ ..++..+. .|++.+.
T Consensus 101 DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-------- 172 (361)
T 2qag_A 101 DTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-------- 172 (361)
T ss_dssp C--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC--------
T ss_pred EeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc--------
Confidence 99998 66776665 555554433 35555554 45665554 3544431
Q ss_pred EeeccccccccccccccccCccccCccccccccccCCCccEEEEEeecCCCCcccceeh--hhhhhhhhccCeEEEEeee
Q psy15725 144 IMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST--EEGERKAKELNVMFIETSA 221 (355)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~--~~~~~~~~~~~~~~~~~sa 221 (355)
.++|+|+|+||+|+...+.+.. .+...++...+++++++|+
T Consensus 173 -------------------------------------~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa 215 (361)
T 2qag_A 173 -------------------------------------NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPD 215 (361)
T ss_dssp -------------------------------------S-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC-
T ss_pred -------------------------------------cCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCC
Confidence 3789999999999977665544 4566677777889999999
Q ss_pred eeccc
Q psy15725 222 KAGYN 226 (355)
Q Consensus 222 ~~~~~ 226 (355)
..+.+
T Consensus 216 ~~~~~ 220 (361)
T 2qag_A 216 AESDE 220 (361)
T ss_dssp -----
T ss_pred cCCCc
Confidence 88776
No 177
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.59 E-value=1.2e-15 Score=144.67 Aligned_cols=173 Identities=18% Similarity=0.240 Sum_probs=100.0
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcC--CCCCc----ee--eeecccceeeecccCCCCCccccccceeeeeeeeeecC
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDS--FDNTY----QA--TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED 82 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~--~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 82 (355)
.+.++|+++|++++|||||+++|++.. +.... .. .-.|...+-..+..+....+..+.+.++. ....++.
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~--~~~~~~~ 82 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDI--ALWKFET 82 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSC--SCEEEEC
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEE--EEEEEec
Confidence 367999999999999999999998742 11100 00 00000000000000000000011111121 2223344
Q ss_pred cEEEEEEEecCCcccccccccccccCccEEEEEEECCCcc---hhh---hHHHHHHHHhhhcCCceEEeecccccccccc
Q psy15725 83 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN---SFH---QTSKWIDDVRTERGSDVIIMLVGSIETNFTH 156 (355)
Q Consensus 83 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (355)
....+.+|||||+++|...+..+++.+|++|+|+|+++.. +|+ +...+...+..
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-------------------- 142 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-------------------- 142 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--------------------
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--------------------
Confidence 5568999999999999999999999999999999999752 342 11122222211
Q ss_pred ccccccCccccCccccccccccCCCccE-EEEEeecCCCCc--ccc--eehhhhhhhhhccC-----eEEEEeeeeeccc
Q psy15725 157 LSFHHANSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSD--KRQ--VSTEEGERKAKELN-----VMFIETSAKAGYN 226 (355)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~--~~~--v~~~~~~~~~~~~~-----~~~~~~sa~~~~~ 226 (355)
.++| +++|+||+|+.+ +.. ....+...++...+ .+++++|+.++.+
T Consensus 143 ------------------------~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~n 198 (458)
T 1f60_A 143 ------------------------LGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDN 198 (458)
T ss_dssp ------------------------TTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBT
T ss_pred ------------------------cCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcC
Confidence 1554 999999999863 111 11123333434333 6899999999998
Q ss_pred cce
Q psy15725 227 VKQ 229 (355)
Q Consensus 227 v~~ 229 (355)
+.+
T Consensus 199 v~~ 201 (458)
T 1f60_A 199 MIE 201 (458)
T ss_dssp TTB
T ss_pred ccc
Confidence 864
No 178
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.59 E-value=5.4e-15 Score=129.92 Aligned_cols=86 Identities=8% Similarity=0.137 Sum_probs=57.5
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCC-CCCceeeeecccceeeecccCCCCCccccc-cceeeeeeeeeecCcEEEE
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIVGKTSLITRFMYDSFDNTYQAT-IGIDFLSKTMYLEDRTVRL 87 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~ 87 (355)
..+.++|+++|++|||||||+++|++... ...+ .++ +........+..+ ...+
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~-----------------------~~~~~t~~~~~~~~~~~--~~~i 73 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKL-----------------------GSQTLTKTCSKSQGSWG--NREI 73 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCT-----------------------TSCCCCCSCEEEEEEET--TEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCC-----------------------CCCceeeeeEEEEEEeC--CCEE
Confidence 34579999999999999999999998552 1111 111 1122222233333 3579
Q ss_pred EEEecCCccccccccc-----------ccccCccEEEEEEECCC
Q psy15725 88 QLWDTAGQERFRSLIP-----------SYIRDSTVAVVVYDITN 120 (355)
Q Consensus 88 ~i~D~~g~~~~~~~~~-----------~~~~~~d~ii~v~d~~~ 120 (355)
.+|||||+..+..... .+++.+|++++|||+++
T Consensus 74 ~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~ 117 (260)
T 2xtp_A 74 VIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR 117 (260)
T ss_dssp EEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC
T ss_pred EEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC
Confidence 9999999876543222 25688999999999986
No 179
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.59 E-value=5.8e-15 Score=125.23 Aligned_cols=87 Identities=15% Similarity=0.112 Sum_probs=55.7
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCccc--CCHHHHHHHHhhc--CcEEEEecCCCCCC
Q psy15725 255 TVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ--VSTEEGERKAKEL--NVMFIETSAKAGYN 330 (355)
Q Consensus 255 ~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~--v~~~~~~~~~~~~--~~~~~~~SA~~~~g 330 (355)
+++++++|+++..+..+. .....+.. .++|+++++||+|+.+..+ .....+..++... .+.++++||+++.|
T Consensus 110 ~~~~~v~d~~~~~~~~~~-~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~ 185 (210)
T 1pui_A 110 QGLVVLMDIRHPLKDLDQ-QMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQG 185 (210)
T ss_dssp EEEEEEEETTSCCCHHHH-HHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBS
T ss_pred cEEEEEEECCCCCchhHH-HHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCC
Confidence 445677777665543321 11111222 5789999999999865321 1123444444444 35899999999999
Q ss_pred HHHHHHHHHHHcCCC
Q psy15725 331 VKQLFRRVAAALPGM 345 (355)
Q Consensus 331 v~~l~~~l~~~i~~~ 345 (355)
+++++++|.+.+...
T Consensus 186 ~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 186 VDKLRQKLDTWFSEM 200 (210)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999987654
No 180
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.58 E-value=3.3e-15 Score=133.96 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=65.5
Q ss_pred EEEEEEecCCcc-------------cccccccccccCccEEE-EEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccc
Q psy15725 85 VRLQLWDTAGQE-------------RFRSLIPSYIRDSTVAV-VVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSI 150 (355)
Q Consensus 85 ~~~~i~D~~g~~-------------~~~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (355)
..+.+|||||.. .+...+..+++.++.++ +|+|+++..+......|.+.+.
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~--------------- 189 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD--------------- 189 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC---------------
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC---------------
Confidence 479999999964 34456667777887666 7999988655544434554442
Q ss_pred ccccccccccccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhc--cC-eEEEEeeeeecccc
Q psy15725 151 ETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE--LN-VMFIETSAKAGYNV 227 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~--~~-~~~~~~sa~~~~~v 227 (355)
..+.|+++|+||+|+.+............... .+ .+++.+|+.++.++
T Consensus 190 -----------------------------~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi 240 (299)
T 2aka_B 190 -----------------------------PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGK 240 (299)
T ss_dssp -----------------------------TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSC
T ss_pred -----------------------------CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhcccc
Confidence 13789999999999865433111111111111 12 46788899988887
Q ss_pred ceEE
Q psy15725 228 KQVR 231 (355)
Q Consensus 228 ~~i~ 231 (355)
+.++
T Consensus 241 ~~l~ 244 (299)
T 2aka_B 241 KDIT 244 (299)
T ss_dssp BCHH
T ss_pred ccHH
Confidence 7543
No 181
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.58 E-value=1.8e-15 Score=125.41 Aligned_cols=114 Identities=21% Similarity=0.345 Sum_probs=90.2
Q ss_pred eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcccCCHH
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTE 307 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~ 307 (355)
...+.+||++|.+.+...+..++..+|++++|+|++++.+++.+..|+..+.... ..++|+++|+||+|+.+. ....
T Consensus 61 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~ 138 (183)
T 1moz_A 61 NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSAS 138 (183)
T ss_dssp TEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHH
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHH
Confidence 4778999999999999999999999999999999999999999989988886653 368999999999998643 2233
Q ss_pred HHHHHH-----hhcCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725 308 EGERKA-----KELNVMFIETSAKAGYNVKQLFRRVAAALPG 344 (355)
Q Consensus 308 ~~~~~~-----~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~ 344 (355)
+..... ...+++++++||++|.||+++|++|.+.+.+
T Consensus 139 ~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 139 EVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp HHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred HHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHh
Confidence 333322 2234689999999999999999999998754
No 182
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.57 E-value=1.1e-14 Score=128.57 Aligned_cols=101 Identities=12% Similarity=0.134 Sum_probs=64.8
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
...++|+++|.+|+|||||+|+|++..+... +..... +........+.....+.+|
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~-----------------~~~~~~-------t~~~~~~~~~~~~~~l~ii 92 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSI-----------------SPFQSE-------GPRPVMVSRSRAGFTLNII 92 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCC-----------------CSSSCC-------CSSCEEEEEEETTEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccc-----------------cCCCCc-------ceeeEEEEEeeCCeEEEEE
Confidence 3579999999999999999999998654211 111111 1111112223344679999
Q ss_pred ecCCcccccccccc---------cccCccEEEEEEECCCcchhhh-HHHHHHHHhh
Q psy15725 91 DTAGQERFRSLIPS---------YIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRT 136 (355)
Q Consensus 91 D~~g~~~~~~~~~~---------~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~ 136 (355)
||||..++...... ..+.+|++++|+|++.. ++.. ...|+..+..
T Consensus 93 DTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~ 147 (270)
T 1h65_A 93 DTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITD 147 (270)
T ss_dssp ECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHH
T ss_pred ECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHH
Confidence 99999776543321 13479999999999764 4544 3467777654
No 183
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.56 E-value=8e-15 Score=138.48 Aligned_cols=152 Identities=22% Similarity=0.238 Sum_probs=93.9
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
..++|+++|++|||||||+|++++...... +.. ++...+.....+.+++. .+.+||
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v-----------------~~~-----~gtT~d~~~~~i~~~g~--~~~l~D 234 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALV-----------------SPI-----PGTTRDPVDDEVFIDGR--KYVFVD 234 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEE-----------------CCC-----C------CCEEEEETTE--EEEESS
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCccccc-----------------CCC-----CCCcCCceEEEEEECCE--EEEEEE
Confidence 458999999999999999999998542100 111 11112223334445554 578999
Q ss_pred cCCcccccccc------------cccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccc
Q psy15725 92 TAGQERFRSLI------------PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSF 159 (355)
Q Consensus 92 ~~g~~~~~~~~------------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
|+|...+.... ..+++.+|++++|+|+++..+.+.. .+...+..
T Consensus 235 t~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~----------------------- 290 (439)
T 1mky_A 235 TAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER----------------------- 290 (439)
T ss_dssp CSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH-----------------------
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH-----------------------
Confidence 99985433221 2356789999999999987666542 22222221
Q ss_pred cccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhh-----hhhhhccCeEEEEeeeeeccccceEEE
Q psy15725 160 HHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEG-----ERKAKELNVMFIETSAKAGYNVKQVRL 232 (355)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~-----~~~~~~~~~~~~~~sa~~~~~v~~i~~ 232 (355)
.+.|+++|+||+|+.+.+.....+. ..+......+++.+||.++.+++.++.
T Consensus 291 ---------------------~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~ 347 (439)
T 1mky_A 291 ---------------------RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMID 347 (439)
T ss_dssp ---------------------TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHH
T ss_pred ---------------------cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHH
Confidence 2789999999999865443222221 223333457899999999998886543
No 184
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.56 E-value=3.5e-15 Score=137.55 Aligned_cols=74 Identities=19% Similarity=0.282 Sum_probs=64.8
Q ss_pred EEEEEEEecCCcccccccccccccCccEEEEEEECCC----------cchhhhHHHHHHHHhhhcCCceEEeeccccccc
Q psy15725 84 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN----------ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETN 153 (355)
Q Consensus 84 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (355)
.+.+++|||+|++.|+.+|..++++++++|+|||+++ ..+|+....|++.+...
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~---------------- 279 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN---------------- 279 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC----------------
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc----------------
Confidence 4789999999999999999999999999999999999 89999999999887542
Q ss_pred cccccccccCccccCccccccccccCCCccEEEEEeecCCCCcc
Q psy15725 154 FTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 197 (355)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~ 197 (355)
....++|++||+||+|+...
T Consensus 280 ------------------------~~~~~~piiLvgNK~DL~~~ 299 (402)
T 1azs_C 280 ------------------------RWLRTISVILFLNKQDLLAE 299 (402)
T ss_dssp ------------------------TTCSSCCEEEEEECHHHHHH
T ss_pred ------------------------ccCCCCeEEEEEEChhhhhh
Confidence 12347999999999998543
No 185
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.55 E-value=2.7e-15 Score=137.28 Aligned_cols=108 Identities=19% Similarity=0.189 Sum_probs=76.2
Q ss_pred EEEEEEEecCCcccccccccccccCccEEEEEEECCC----------cchhhhHHHHHHHHhhhcCCceEEeeccccccc
Q psy15725 84 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN----------ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETN 153 (355)
Q Consensus 84 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (355)
.+.+.+|||+|++.++..|..++++++++|||||+++ ..+|.....|+..+...
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~---------------- 263 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN---------------- 263 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC----------------
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcc----------------
Confidence 4789999999999999999999999999999999999 77898888888877532
Q ss_pred cccccccccCccccCccccccccccCCCccEEEEEeecCCCCccc----------------ceehhhhhhhh--------
Q psy15725 154 FTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR----------------QVSTEEGERKA-------- 209 (355)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~----------------~v~~~~~~~~~-------- 209 (355)
....++|++|++||+|+..++ .++.+++..++
T Consensus 264 ------------------------~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~ 319 (362)
T 1zcb_A 264 ------------------------RVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKR 319 (362)
T ss_dssp ------------------------GGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTC
T ss_pred ------------------------hhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhh
Confidence 112479999999999985332 13444444443
Q ss_pred h---ccCeEEEEeeeeeccccceEE
Q psy15725 210 K---ELNVMFIETSAKAGYNVKQVR 231 (355)
Q Consensus 210 ~---~~~~~~~~~sa~~~~~v~~i~ 231 (355)
. ...+.+.++||.++.++..++
T Consensus 320 ~~~~~~~~~~~~tSA~d~~nV~~vF 344 (362)
T 1zcb_A 320 RDQQQRPLYHHFTTAINTENIRLVF 344 (362)
T ss_dssp SSCC--CCEEEECCTTCHHHHHHHH
T ss_pred cccCCCceEEEEEecCCchhHHHHH
Confidence 2 335678899999988887543
No 186
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.55 E-value=1.1e-14 Score=145.10 Aligned_cols=135 Identities=19% Similarity=0.174 Sum_probs=85.9
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec-----CcEEE
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-----DRTVR 86 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~ 86 (355)
+--||+|+||.++|||||..+|+...-.....+.+.+++.. + +....+....+.+......+.+. ++.+.
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~----~-D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~ 86 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAAT----T-DWMVQEQERGITITSAAVTTFWKGSRGQYDNYR 86 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC-----------------------------CCEEEEEECCTTSCSCCEE
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCcc----C-CChHHHHHcCCeEEeeeEEEEeccCcCCCCCEE
Confidence 44689999999999999999998633111111112111111 1 22222333333333333333332 23689
Q ss_pred EEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccc
Q psy15725 87 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166 (355)
Q Consensus 87 ~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (355)
++++||||+-+|.......++-+|++|+|+|+...-..+...-|....+.
T Consensus 87 iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~------------------------------ 136 (709)
T 4fn5_A 87 VNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY------------------------------ 136 (709)
T ss_dssp EEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH------------------------------
T ss_pred EEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc------------------------------
Confidence 99999999999999999999999999999999997666666666555442
Q ss_pred cCccccccccccCCCccEEEEEeecCCCCc
Q psy15725 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSD 196 (355)
Q Consensus 167 ~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 196 (355)
++|.++++||.|...
T Consensus 137 ---------------~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 137 ---------------GVPRIVYVNKMDRQG 151 (709)
T ss_dssp ---------------TCCEEEEEECSSSTT
T ss_pred ---------------CCCeEEEEccccccC
Confidence 899999999999854
No 187
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.31 E-value=4.6e-16 Score=131.53 Aligned_cols=114 Identities=33% Similarity=0.571 Sum_probs=96.8
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCceEEEEeeCCCCCCcc----
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDKR---- 302 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~---- 302 (355)
..+.+.+||++|++.+...+..++..+|++++|+|++++.+++.+. .|+..+.... .++|+++|+||+|+.+..
T Consensus 76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~ 154 (204)
T 3th5_A 76 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIE 154 (204)
Confidence 3466779999999999999999999999999999999999998886 7888776644 489999999999996542
Q ss_pred --------cCCHHHHHHHHhhcCc-EEEEecCCCCCCHHHHHHHHHHHc
Q psy15725 303 --------QVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAAL 342 (355)
Q Consensus 303 --------~v~~~~~~~~~~~~~~-~~~~~SA~~~~gv~~l~~~l~~~i 342 (355)
.+...+...+++..++ +++++||++|.||+++|++|.+.+
T Consensus 155 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 155 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 4555666677777776 899999999999999999998865
No 188
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.54 E-value=1.8e-15 Score=147.29 Aligned_cols=110 Identities=23% Similarity=0.304 Sum_probs=48.8
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCce--------eeeecccceeeecccCCCCCccccccceeeeeeeeeecC
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQ--------ATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED 82 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 82 (355)
.+.++|+++|++|+|||||+++|++....-... ..-.|+..+-..+..+.+..+..+++..+.....+ ..
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~--~~ 252 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTF--ES 252 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEE--Ee
Confidence 456899999999999999999997643111000 00011111211222233333334444444444333 33
Q ss_pred cEEEEEEEecCCcccccccccccccCccEEEEEEECCCcc
Q psy15725 83 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122 (355)
Q Consensus 83 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 122 (355)
....+.||||||+.+|...+...++.+|++|+|+|+++..
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~ 292 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNN 292 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECC
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCc
Confidence 4468999999999999999999999999999999998753
No 189
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.53 E-value=2e-15 Score=148.43 Aligned_cols=132 Identities=15% Similarity=0.134 Sum_probs=91.9
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
.||+|+||.++|||||..+|+...-.-.....+.+++..+ +....+. ..|++.......+.+++..++++|||
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~-----D~~~~Er--eRGITI~s~~~~~~~~~~~iNlIDTP 75 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRT-----DNTLLER--QRGITIQTGITSFQWENTKVNIIDTP 75 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCST-----TCSTTHH--HHSSCSSCCCCCCBCSSCBCCCEECC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCccc-----CCcHHHH--hCCCcEEeeeEEEEECCEEEEEEECC
Confidence 4799999999999999999987442222222221111110 1111122 23444455555666777889999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725 94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID 173 (355)
Q Consensus 94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (355)
|+.+|...+...++.+|++++|+|+.+.-..+...-|....+
T Consensus 76 GH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~-------------------------------------- 117 (638)
T 3j25_A 76 GHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK-------------------------------------- 117 (638)
T ss_dssp CSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHH--------------------------------------
T ss_pred CcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH--------------------------------------
Confidence 999999999999999999999999998665555555544333
Q ss_pred cccccCCCccEEEEEeecCCCCcc
Q psy15725 174 DVRTERGSDVIIMLVGNKTDLSDK 197 (355)
Q Consensus 174 ~~~~~~~~~~piilv~nK~D~~~~ 197 (355)
.++|.++++||.|....
T Consensus 118 -------~~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 118 -------MGIPTIFFINKIDQNGI 134 (638)
T ss_dssp -------HTCSCEECCEECCSSSC
T ss_pred -------cCCCeEEEEeccccccC
Confidence 27899999999998653
No 190
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.52 E-value=1.2e-14 Score=132.97 Aligned_cols=119 Identities=20% Similarity=0.239 Sum_probs=91.9
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCC----------cccHHHHHHHHHHHHhhc-CCCceEEEEeeCC
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN----------ANSFHQTSKWIDDVRTER-GSDVIIMLVGNKT 296 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~ 296 (355)
+.+.+.+||++|++.++..|..++.+++++|||+|+++ ..++++...|+..+.... ..+.|+||++||+
T Consensus 199 ~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~ 278 (362)
T 1zcb_A 199 KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKT 278 (362)
T ss_dssp TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEECh
Confidence 46789999999999999999999999999999999999 778988888988887643 3689999999999
Q ss_pred CCCCcc----------------cCCHHHHHHHH--------h---hcCcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725 297 DLSDKR----------------QVSTEEGERKA--------K---ELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346 (355)
Q Consensus 297 Dl~~~~----------------~v~~~~~~~~~--------~---~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~ 346 (355)
|+.+.+ .+..+++..++ + ..++.+++|||+++.||+++|+++.+.|....
T Consensus 279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~ 355 (362)
T 1zcb_A 279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN 355 (362)
T ss_dssp HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHH
Confidence 985322 25666766654 1 34578999999999999999999999887543
No 191
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.50 E-value=2.5e-14 Score=131.89 Aligned_cols=118 Identities=17% Similarity=0.215 Sum_probs=96.4
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCC----------cccHHHHHHHHHHHHhhc-CCCceEEEEeeCC
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN----------ANSFHQTSKWIDDVRTER-GSDVIIMLVGNKT 296 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~ 296 (355)
+.+.+.+||++|++.++.+|..++.+++++|+|||+++ ..++++...|+..+.... ..++|++|++||+
T Consensus 215 ~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~ 294 (402)
T 1azs_C 215 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 294 (402)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECH
T ss_pred CCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEECh
Confidence 35889999999999999999999999999999999999 889999999999987653 3789999999999
Q ss_pred CCCCccc---C---------------------------CHHHHHHHH-----hh--------cCcEEEEecCCCCCCHHH
Q psy15725 297 DLSDKRQ---V---------------------------STEEGERKA-----KE--------LNVMFIETSAKAGYNVKQ 333 (355)
Q Consensus 297 Dl~~~~~---v---------------------------~~~~~~~~~-----~~--------~~~~~~~~SA~~~~gv~~ 333 (355)
|+...+. + ..+++..++ +. .++.+++|||+++.||++
T Consensus 295 DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~ 374 (402)
T 1azs_C 295 DLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR 374 (402)
T ss_dssp HHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHH
T ss_pred hhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHH
Confidence 9853321 1 024444442 11 357889999999999999
Q ss_pred HHHHHHHHcCCC
Q psy15725 334 LFRRVAAALPGM 345 (355)
Q Consensus 334 l~~~l~~~i~~~ 345 (355)
+|+++.+.|...
T Consensus 375 vF~~v~~~I~~~ 386 (402)
T 1azs_C 375 VFNDCRDIIQRM 386 (402)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887643
No 192
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.50 E-value=2.9e-14 Score=131.24 Aligned_cols=102 Identities=22% Similarity=0.228 Sum_probs=70.2
Q ss_pred EEEEEEecCCcccc-------------cccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccc
Q psy15725 85 VRLQLWDTAGQERF-------------RSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIE 151 (355)
Q Consensus 85 ~~~~i~D~~g~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (355)
..+.+|||||...+ ..+...+++.+|++|+|+|..+..... ..|+..++..
T Consensus 136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~-------------- 199 (360)
T 3t34_A 136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREV-------------- 199 (360)
T ss_dssp CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHS--------------
T ss_pred CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHh--------------
Confidence 36899999998776 456677889999999999987654432 2233333221
Q ss_pred cccccccccccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccce
Q psy15725 152 TNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 229 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~ 229 (355)
...+.|+++|+||+|+.+......+.........+.+++.+++..+.+++.
T Consensus 200 ---------------------------~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~ 250 (360)
T 3t34_A 200 ---------------------------DPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINK 250 (360)
T ss_dssp ---------------------------CTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHT
T ss_pred ---------------------------cccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhcc
Confidence 123679999999999876554443444445556677888898888776653
No 193
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.50 E-value=1.9e-14 Score=128.94 Aligned_cols=60 Identities=15% Similarity=0.102 Sum_probs=40.0
Q ss_pred CCceEEEEeeCCCCCCcccC--CHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 285 SDVIIMLVGNKTDLSDKRQV--STEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 285 ~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
.+.|+++|+||.|+.+.+++ ..+++..+++..+++++++||++| |++++|.++.+.+.+.
T Consensus 154 ~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 154 NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 56899999999999765433 234566777888899999999999 9999999999887543
No 194
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.48 E-value=2.3e-13 Score=126.44 Aligned_cols=92 Identities=14% Similarity=0.122 Sum_probs=61.1
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcC--CCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725 254 STVAVVVYDITNANSFHQTSKWIDDVRTERG--SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 331 (355)
Q Consensus 254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv 331 (355)
++.+++++|++ ...+.++..+...+..... .+.|.++++||+|+... . .........+..+++++++||+++.|+
T Consensus 236 a~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~-~~~~l~~~l~~~g~~vi~iSA~~g~gi 312 (416)
T 1udx_A 236 TRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-E-AVKALADALAREGLAVLPVSALTGAGL 312 (416)
T ss_dssp SSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-HHHHHHHHHHTTTSCEEECCTTTCTTH
T ss_pred HHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-HHHHHHHHHHhcCCeEEEEECCCccCH
Confidence 44555666665 3444455555444443321 35788999999998643 1 122233344455789999999999999
Q ss_pred HHHHHHHHHHcCCCCCC
Q psy15725 332 KQLFRRVAAALPGMDST 348 (355)
Q Consensus 332 ~~l~~~l~~~i~~~~~~ 348 (355)
++++++|.+.+...+..
T Consensus 313 ~eL~~~i~~~l~~~~~~ 329 (416)
T 1udx_A 313 PALKEALHALVRSTPPP 329 (416)
T ss_dssp HHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHhcccc
Confidence 99999999999876653
No 195
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.48 E-value=3.5e-13 Score=123.24 Aligned_cols=225 Identities=16% Similarity=0.169 Sum_probs=122.2
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
-..+|++||.||||||||+|+|++..... ..++-+ |+ +.....+.+ .+.++.++|
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v------------------~~~pft---T~--~~~~g~~~~--~~~~i~l~D 125 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEA------------------AEYEFT---TL--VTVPGVIRY--KGAKIQMLD 125 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCG------------------GGTCSS---CC--CEEEEEEEE--TTEEEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcc------------------cCCCCc---ee--eeeeEEEEe--CCcEEEEEe
Confidence 34689999999999999999999854211 111111 11 111222333 346799999
Q ss_pred cCCcccccc-------cccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCc
Q psy15725 92 TAGQERFRS-------LIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164 (355)
Q Consensus 92 ~~g~~~~~~-------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (355)
|||...-.. ..-..++.+|++++|+|++++.. .......++...
T Consensus 126 ~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~--------------------------- 176 (376)
T 4a9a_A 126 LPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLH--HKQIIEKELEGV--------------------------- 176 (376)
T ss_dssp CGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHH--HHHHHHHHHHHT---------------------------
T ss_pred CCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHH--HHHHHHHHHHHh---------------------------
Confidence 999732211 12234678999999999998632 222222333221
Q ss_pred cccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccc
Q psy15725 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFR 244 (355)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~ 244 (355)
.......|.+++.||.|..... +......... +.+...
T Consensus 177 ------------~~~l~~k~~~i~~nK~d~~gi~-----------------i~~~~~~~~l-------------~~eeik 214 (376)
T 4a9a_A 177 ------------GIRLNKTPPDILIKKKEKGGIS-----------------ITNTVPLTHL-------------GNDEIR 214 (376)
T ss_dssp ------------TEEETCCCCCEEEEECSSSCEE-----------------EEESSCCSSC-------------CHHHHH
T ss_pred ------------hHhhccCChhhhhhHhhhhhhh-----------------hhcchhhhhc-------------cHHHHH
Confidence 0112356788899999964211 0000000000 011111
Q ss_pred ccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEec
Q psy15725 245 SLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETS 324 (355)
Q Consensus 245 ~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 324 (355)
.+...+.-...-++++.+.+ .++ ....+........|++++.||+|..+. ++...+.+ .-.++++|
T Consensus 215 ~il~~~~lt~kpv~~~~nv~----edd---l~d~~~~~~~~~~p~i~v~nKid~~~~-----eele~l~~--~~~~~~is 280 (376)
T 4a9a_A 215 AVMSEYRINSAEIAFRCDAT----VDD---LIDVLEASSRRYMPAIYVLNKIDSLSI-----EELELLYR--IPNAVPIS 280 (376)
T ss_dssp HHHHHTTCCSEEEEECSCCC----HHH---HHHHHTTTTCEEECEEEEEECGGGSCH-----HHHHHHTT--STTEEECC
T ss_pred HHHHHhcccCCCeeecccCC----HHH---HHHHHHHHHhhccceEEEEecccccCH-----HHHHHHhc--ccchhhhh
Confidence 12222222233334443332 222 222332222256899999999996432 22222222 12588999
Q ss_pred CCCCCCHHHHHHHHHHHcCCCC
Q psy15725 325 AKAGYNVKQLFRRVAAALPGMD 346 (355)
Q Consensus 325 A~~~~gv~~l~~~l~~~i~~~~ 346 (355)
+..+.|++++.+.+.+.+--.+
T Consensus 281 ~~~e~gLd~Li~~~y~~L~Li~ 302 (376)
T 4a9a_A 281 SGQDWNLDELLQVMWDRLNLVR 302 (376)
T ss_dssp TTTCTTHHHHHHHHHHHHCCEE
T ss_pred hhhcccchhHHHHHHHHcCCcE
Confidence 9999999999999988875443
No 196
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.46 E-value=1.7e-13 Score=122.80 Aligned_cols=105 Identities=16% Similarity=0.184 Sum_probs=87.7
Q ss_pred EEEEEeCCCcccccccccccccCCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHH
Q psy15725 231 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN-SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEG 309 (355)
Q Consensus 231 ~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~ 309 (355)
.+.+||+ ++.++.+++.+++++|++++|||++++. ++..+..|+..+.. .++|+++|+||+|+.+.+.+ ++.
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~ 136 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLYDEDDL--RKV 136 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHH
Confidence 5679999 8899999999999999999999999987 78888899988765 58999999999999755443 334
Q ss_pred HHHHhhcC--cEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725 310 ERKAKELN--VMFIETSAKAGYNVKQLFRRVAAAL 342 (355)
Q Consensus 310 ~~~~~~~~--~~~~~~SA~~~~gv~~l~~~l~~~i 342 (355)
..+++.++ +++++|||++|.||+++|.++...+
T Consensus 137 ~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~gei 171 (301)
T 1u0l_A 137 RELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKI 171 (301)
T ss_dssp HHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSSE
T ss_pred HHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCCe
Confidence 45555555 8999999999999999999886543
No 197
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.46 E-value=1.5e-13 Score=138.95 Aligned_cols=117 Identities=15% Similarity=0.155 Sum_probs=75.0
Q ss_pred CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccc--cccceeeeeeeee--------
Q psy15725 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQ--ATIGIDFLSKTMY-------- 79 (355)
Q Consensus 10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~t~~~~~~~~~~~-------- 79 (355)
+....||+|+|+.|+|||||+++|+......... ..+.+.+ + +....+.. .|+........+.
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~--~~~~~~~----~-D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~ 88 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAA--KAGEARF----T-DTRKDEQERGITIKSTAISLYSEMSDEDVKE 88 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC-------------------------CCCBCCCEEEEEEECCHHHHHH
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccc--cCCCcee----e-cCchhhhhcceeEeeceeEEEeccccccccc
Confidence 3456899999999999999999999852111000 0011111 1 11111111 2332222222221
Q ss_pred ----ecCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHH
Q psy15725 80 ----LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133 (355)
Q Consensus 80 ----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~ 133 (355)
.++....+++|||||+.+|...+..+++.+|++|+|||+++..+++....|...
T Consensus 89 i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~ 146 (842)
T 1n0u_A 89 IKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQA 146 (842)
T ss_dssp CSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHH
T ss_pred ccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH
Confidence 234578999999999999999999999999999999999999888887766544
No 198
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.45 E-value=2e-13 Score=123.27 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=25.2
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCC
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSF 38 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~ 38 (355)
....+|+|+|++|||||||+|+|++..+
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 4557899999999999999999999876
No 199
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.45 E-value=2.6e-13 Score=125.78 Aligned_cols=103 Identities=18% Similarity=0.299 Sum_probs=55.7
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCC-CCceeeeecccceeeecccCCCCCccccccceeeeeee---------------
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKT--------------- 77 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~--------------- 77 (355)
++|+++|.+|||||||+|+|++.... ..++.+ +..++.+..+....
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~t------------------T~~~~~g~~~~~~~~~~~~l~~~~~p~~~ 62 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFT------------------TIEANVGVTYAITDHPCKELGCSPNPQNY 62 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------------------------CCEEEEEEEEECSCSSSCCSCCCSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCc------------------ccCCceEEEeeccCCchHHhhhhcccccc
Confidence 58999999999999999999986521 111110 11222232111100
Q ss_pred eeecC-cEEEEEEEecCCccc----cccccc---ccccCccEEEEEEECCCc-----------chhhhHHHHHHHH
Q psy15725 78 MYLED-RTVRLQLWDTAGQER----FRSLIP---SYIRDSTVAVVVYDITNA-----------NSFHQTSKWIDDV 134 (355)
Q Consensus 78 ~~~~~-~~~~~~i~D~~g~~~----~~~~~~---~~~~~~d~ii~v~d~~~~-----------~s~~~~~~~~~~~ 134 (355)
..+++ +...+.+|||||+.. ...+.. ..++.+|++++|+|+++. +.+.++..+..++
T Consensus 63 ~~~~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL 138 (397)
T 1wxq_A 63 EYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREI 138 (397)
T ss_dssp CEETTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHH
T ss_pred cccCCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHH
Confidence 01122 246899999999853 222333 457899999999999886 4555555444444
No 200
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.44 E-value=2.6e-13 Score=126.20 Aligned_cols=164 Identities=14% Similarity=0.197 Sum_probs=83.9
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
-.++|+++|++|||||||+++|++..++....+ .......++++.......+...+....+.+||
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~---------------~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~D 94 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYP---------------GPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVD 94 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCC---------------SCC-----CCEEEEEECC------CEEEEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCC---------------CcccCCccceeeeeEEEEEecCCcccceeeee
Confidence 357899999999999999999998664211000 00000122333222222222233345789999
Q ss_pred cCCccccc-------c------------------cccccccCccEEEEEEECCCc-chhhhHH-HHHHHHhhhcCCceEE
Q psy15725 92 TAGQERFR-------S------------------LIPSYIRDSTVAVVVYDITNA-NSFHQTS-KWIDDVRTERGSDVII 144 (355)
Q Consensus 92 ~~g~~~~~-------~------------------~~~~~~~~~d~ii~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~~ 144 (355)
++|...+. . +...++.++++.+++|+.... .++.... .|+..+.
T Consensus 95 t~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~--------- 165 (418)
T 2qag_C 95 TPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH--------- 165 (418)
T ss_dssp CC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---------
T ss_pred chhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---------
Confidence 99976531 1 223445566655555555443 4565544 5666653
Q ss_pred eeccccccccccccccccCccccCccccccccccCCCccEEEEEeecCCCCcccceeh--hhhhhhhhccCeEEEEeeee
Q psy15725 145 MLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST--EEGERKAKELNVMFIETSAK 222 (355)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~--~~~~~~~~~~~~~~~~~sa~ 222 (355)
.++|+|+|+||+|+...+.+.. ......+...+++++++|+.
T Consensus 166 ------------------------------------~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~ 209 (418)
T 2qag_C 166 ------------------------------------EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPET 209 (418)
T ss_dssp ------------------------------------TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC--
T ss_pred ------------------------------------ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCC
Confidence 2789999999999876555443 45566666778889999988
Q ss_pred eccccceEEEEEE
Q psy15725 223 AGYNVKQVRLQLW 235 (355)
Q Consensus 223 ~~~~v~~i~~~i~ 235 (355)
.+.+++..+..+.
T Consensus 210 ~~~~v~~~~~~l~ 222 (418)
T 2qag_C 210 DDEEENKLVKKIK 222 (418)
T ss_dssp -------------
T ss_pred CCcCHHHHHHHHH
Confidence 8887776554443
No 201
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.43 E-value=8.7e-14 Score=124.68 Aligned_cols=128 Identities=16% Similarity=0.142 Sum_probs=98.8
Q ss_pred ceeeecccCCCC-CccccccceeeeeeeeeecCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcc-hhhhHH
Q psy15725 51 SLITRFMYDSFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN-SFHQTS 128 (355)
Q Consensus 51 ~~~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~ 128 (355)
..+.+|..+.+. ..+.||+|..+. .....++ .+.+||+ +++|..+++.+++++|++|+|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 455666667777 678888885444 3332222 6899999 8999999999999999999999999987 788899
Q ss_pred HHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhh
Q psy15725 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERK 208 (355)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~ 208 (355)
.|+..++. .++|+++|+||+|+.+.+.+ ++..++
T Consensus 106 ~~l~~~~~--------------------------------------------~~~piilv~NK~DL~~~~~v--~~~~~~ 139 (301)
T 1u0l_A 106 KFLVLAEK--------------------------------------------NELETVMVINKMDLYDEDDL--RKVREL 139 (301)
T ss_dssp HHHHHHHH--------------------------------------------TTCEEEEEECCGGGCCHHHH--HHHHHH
T ss_pred HHHHHHHH--------------------------------------------CCCCEEEEEeHHHcCCchhH--HHHHHH
Confidence 99987753 27999999999999765433 334455
Q ss_pred hhccC--eEEEEeeeeeccccceE
Q psy15725 209 AKELN--VMFIETSAKAGYNVKQV 230 (355)
Q Consensus 209 ~~~~~--~~~~~~sa~~~~~v~~i 230 (355)
+..+. .+++++||.++.+++.+
T Consensus 140 ~~~~~~~~~~~~~SAktg~gv~~l 163 (301)
T 1u0l_A 140 EEIYSGLYPIVKTSAKTGMGIEEL 163 (301)
T ss_dssp HHHHTTTSCEEECCTTTCTTHHHH
T ss_pred HHHHhhhCcEEEEECCCCcCHHHH
Confidence 55555 78999999999988764
No 202
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.43 E-value=1.7e-13 Score=135.94 Aligned_cols=49 Identities=10% Similarity=0.213 Sum_probs=38.7
Q ss_pred EEEEEecCCccc---ccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725 86 RLQLWDTAGQER---FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134 (355)
Q Consensus 86 ~~~i~D~~g~~~---~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 134 (355)
.+.+|||||... ....+..+++.+|++++|+|++++.+......|.+.+
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 589999999754 3455667788999999999999988877776665544
No 203
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.42 E-value=5.1e-14 Score=120.85 Aligned_cols=60 Identities=18% Similarity=0.209 Sum_probs=47.0
Q ss_pred CceEEEEeeCCCCCCcccCCHHHHHHHHhhc--CcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKEL--NVMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 286 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
+.|+++|+||+|+.+.+.....+....++.. +++++++||++|.|++++|++|.+.+...
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 4789999999998654444555555555543 57999999999999999999999887543
No 204
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.41 E-value=1.2e-13 Score=125.90 Aligned_cols=122 Identities=21% Similarity=0.249 Sum_probs=90.9
Q ss_pred ccccceeeeeeeeeecCcEEEEEEEecCCcccccccccccccCccEEEEEEECCC----------cchhhhHHHHHHHHh
Q psy15725 66 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN----------ANSFHQTSKWIDDVR 135 (355)
Q Consensus 66 ~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~ 135 (355)
.+|+|+.... +.+ +.+.+.+|||+|++.++..|..++++++++|+|||+++ ..+|+....|++.+.
T Consensus 178 ~~T~Gi~~~~--~~~--~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~ 253 (353)
T 1cip_A 178 VKTTGIVETH--FTF--KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSIC 253 (353)
T ss_dssp CCCCSEEEEE--EEE--TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHH
T ss_pred CceeceEEEE--Eee--CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHH
Confidence 3566654322 223 35789999999999999999999999999999999999 566888778877775
Q ss_pred hhcCCceEEeeccccccccccccccccCccccCccccccccccCCCccEEEEEeecCCCCccc---------------ce
Q psy15725 136 TERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR---------------QV 200 (355)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~---------------~v 200 (355)
.. ....++|++|++||+|+..++ .+
T Consensus 254 ~~----------------------------------------~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~ 293 (353)
T 1cip_A 254 NN----------------------------------------KWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSN 293 (353)
T ss_dssp TC----------------------------------------GGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCS
T ss_pred cC----------------------------------------ccccCCcEEEEEECcCchhhhccccchhhcccccCCCC
Confidence 32 112479999999999985332 24
Q ss_pred ehhhhhhhhh-----------ccCeEEEEeeeeeccccceEE
Q psy15725 201 STEEGERKAK-----------ELNVMFIETSAKAGYNVKQVR 231 (355)
Q Consensus 201 ~~~~~~~~~~-----------~~~~~~~~~sa~~~~~v~~i~ 231 (355)
+.+++..++. ..++.+.++||.++.++..++
T Consensus 294 ~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF 335 (353)
T 1cip_A 294 TYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVF 335 (353)
T ss_dssp CHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHH
Confidence 4555555554 356789999999998887543
No 205
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.41 E-value=5.7e-13 Score=119.79 Aligned_cols=115 Identities=19% Similarity=0.336 Sum_probs=94.8
Q ss_pred eEEEEEEeCCCcccc-----cccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc--CCCceEEEEeeCCCCCC-
Q psy15725 229 QVRLQLWDTAGQERF-----RSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER--GSDVIIMLVGNKTDLSD- 300 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~-----~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~- 300 (355)
.+.+.+||++|++.+ ..++..++.+++++++|||+++..+++++..|...+.... ..++|+++|+||+|+.+
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~ 130 (307)
T 3r7w_A 51 NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL 130 (307)
T ss_dssp TEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred ceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch
Confidence 578899999999988 7788889999999999999999999998877655443321 26899999999999975
Q ss_pred -ccc----CCHHHHHHHHhhcC---cEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725 301 -KRQ----VSTEEGERKAKELN---VMFIETSAKAGYNVKQLFRRVAAALPG 344 (355)
Q Consensus 301 -~~~----v~~~~~~~~~~~~~---~~~~~~SA~~~~gv~~l~~~l~~~i~~ 344 (355)
.+. +...++..+++..| ++++++||++ .|+.++|..+++.+..
T Consensus 131 ~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 131 DKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTTCS
T ss_pred hhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHHcC
Confidence 333 55566777888876 7999999999 8999999999887654
No 206
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.39 E-value=2.6e-13 Score=124.45 Aligned_cols=29 Identities=31% Similarity=0.472 Sum_probs=25.7
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCC
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFD 39 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~ 39 (355)
....+|+|+|.+|||||||+|+|++..+.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 44579999999999999999999998764
No 207
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.38 E-value=4.9e-13 Score=129.11 Aligned_cols=140 Identities=19% Similarity=0.222 Sum_probs=82.7
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCC---CCceeeeecccceeeecccCCCCCc-ccccc----ceeeee-------
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFD---NTYQATIVGKTSLITRFMYDSFDNT-YQATI----GIDFLS------- 75 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~t~----~~~~~~------- 75 (355)
....+|+|+|.+|||||||+|+|++..+. ....|+. ........+..... ...+. ...+..
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T----~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~ 138 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTT----DCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNT 138 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCC----CSEEEEECCSSSEEECCC------------------C
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCcc----ceEEEEEECCcccccCCceeeecCcccHHHHhhhccc
Confidence 35689999999999999999999998763 1222211 01111111110000 00000 000000
Q ss_pred -----eeeeecCc-EEEEEEEecCCccc-----------ccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhc
Q psy15725 76 -----KTMYLEDR-TVRLQLWDTAGQER-----------FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER 138 (355)
Q Consensus 76 -----~~~~~~~~-~~~~~i~D~~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~ 138 (355)
..+.++.. ...+.+|||||... |...+..++..+|++++|+|+++....+....|++.+..
T Consensus 139 ~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-- 216 (550)
T 2qpt_A 139 FLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG-- 216 (550)
T ss_dssp CCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT--
T ss_pred ccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh--
Confidence 00001110 02588999999864 445566678899999999999886666666667666542
Q ss_pred CCceEEeeccccccccccccccccCccccCccccccccccCCCccEEEEEeecCCCCccc
Q psy15725 139 GSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR 198 (355)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~ 198 (355)
...|+++|+||+|+.+..
T Consensus 217 ------------------------------------------~~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 217 ------------------------------------------HEDKIRVVLNKADMVETQ 234 (550)
T ss_dssp ------------------------------------------CGGGEEEEEECGGGSCHH
T ss_pred ------------------------------------------cCCCEEEEEECCCccCHH
Confidence 268899999999986543
No 208
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.36 E-value=2.1e-12 Score=110.30 Aligned_cols=62 Identities=21% Similarity=0.206 Sum_probs=44.8
Q ss_pred CceEEEEeeCCCCCCcccCCHHHHHHHHhhc--CcEEEEecCCCCCCHHHHHHHHHHHcCCCCC
Q psy15725 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKEL--NVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347 (355)
Q Consensus 286 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~ 347 (355)
+.|+++|+||+|+.+............++.. +++++++||++|.|++++|++|.+.+...+.
T Consensus 154 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 217 (221)
T 2wsm_A 154 RVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHSD 217 (221)
T ss_dssp HTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC----
T ss_pred hcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHHh
Confidence 4789999999998543333444444444432 4799999999999999999999999876543
No 209
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.34 E-value=1.3e-12 Score=108.02 Aligned_cols=107 Identities=5% Similarity=-0.071 Sum_probs=72.6
Q ss_pred CCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHH---HHHHhhc--CCCceEEEEeeCC-CCCCcccCCHHHHH
Q psy15725 237 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI---DDVRTER--GSDVIIMLVGNKT-DLSDKRQVSTEEGE 310 (355)
Q Consensus 237 ~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~---~~i~~~~--~~~~piilv~nK~-Dl~~~~~v~~~~~~ 310 (355)
.+|+..++.+|+.||.++|++|||+|++|....+ ..+.+ ..+.... ..+.|+++++||. |+. ...+..+..
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI~ 185 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLA 185 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHHH
Confidence 4678999999999999999999999999886544 43443 2232222 2589999999995 774 334444443
Q ss_pred HHHh----hcCcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725 311 RKAK----ELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346 (355)
Q Consensus 311 ~~~~----~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~ 346 (355)
.... ...|.++.|||++|+|+.+.++||.+.+.+++
T Consensus 186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 3221 24589999999999999999999999887655
No 210
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.33 E-value=5.2e-12 Score=114.82 Aligned_cols=83 Identities=22% Similarity=0.275 Sum_probs=53.4
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCC-CceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCc---------
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDN-TYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR--------- 83 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------- 83 (355)
++|+++|.+|||||||+|++++..... .++.+ +..|+.+ .+.+++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~t------------------Ti~p~~g------~v~~~~~r~~~l~~~~ 58 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFC------------------TIEPNTG------VVPMPDPRLDALAEIV 58 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCC------------------CCCCCSS------EEECCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCc------------------eECceEE------EEecCCcccceeeeee
Confidence 689999999999999999999865211 11100 1112211 1111111
Q ss_pred ------EEEEEEEecCCccccc----ccccc---cccCccEEEEEEECCC
Q psy15725 84 ------TVRLQLWDTAGQERFR----SLIPS---YIRDSTVAVVVYDITN 120 (355)
Q Consensus 84 ------~~~~~i~D~~g~~~~~----~~~~~---~~~~~d~ii~v~d~~~ 120 (355)
...+.+|||||+.++. .+... .++.+|++++|+|+++
T Consensus 59 ~~~~~~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 59 KPERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CCSEEECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cccceeeeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 1479999999987653 33333 4789999999999987
No 211
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.31 E-value=5.1e-13 Score=121.68 Aligned_cols=109 Identities=22% Similarity=0.160 Sum_probs=80.8
Q ss_pred cEEEEEEEecCCcccccccccccccCccEEEEEEECC----------CcchhhhHHHHHHHHhhhcCCceEEeecccccc
Q psy15725 83 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT----------NANSFHQTSKWIDDVRTERGSDVIIMLVGSIET 152 (355)
Q Consensus 83 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (355)
+.+.+++|||+|++.|+.+|..++++++++|+|||++ +.++|+....|++.+...
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~--------------- 245 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ--------------- 245 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTC---------------
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhc---------------
Confidence 5789999999999999999999999999999999998 788999888888887532
Q ss_pred ccccccccccCccccCccccccccccCCCccEEEEEeecCCCCcccc--e-------------------ehhhhhhhhhc
Q psy15725 153 NFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ--V-------------------STEEGERKAKE 211 (355)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--v-------------------~~~~~~~~~~~ 211 (355)
....++|++||+||+|+..++. + +.+++..++..
T Consensus 246 -------------------------~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~ 300 (354)
T 2xtz_A 246 -------------------------PCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKK 300 (354)
T ss_dssp -------------------------GGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHH
T ss_pred -------------------------cccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHH
Confidence 1124799999999999854321 1 12334444221
Q ss_pred ----------------cCeEEEEeeeeeccccceEE
Q psy15725 212 ----------------LNVMFIETSAKAGYNVKQVR 231 (355)
Q Consensus 212 ----------------~~~~~~~~sa~~~~~v~~i~ 231 (355)
....++++||.++.++..++
T Consensus 301 ~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF 336 (354)
T 2xtz_A 301 KFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTF 336 (354)
T ss_dssp HHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHH
T ss_pred HHHHhhhccccccccCcceEEEEEEeecchhHHHHH
Confidence 23456899999998887643
No 212
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.30 E-value=1.6e-12 Score=119.17 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=67.6
Q ss_pred eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHH
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEE 308 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~ 308 (355)
.+.+.|+||+|... .....+..+|.+++|+|.+.....+.+. . ...+.|+++|+||+|+.+..... ..
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~-------~-~~~~~p~ivVlNK~Dl~~~~~~~-~~ 238 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK-------K-GVLELADIVVVNKADGEHHKEAR-LA 238 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC-------T-TSGGGCSEEEEECCCGGGHHHHH-HH
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH-------H-hHhhcCCEEEEECCCCcChhHHH-HH
Confidence 34567889998322 1222347899999999987655432221 1 11346999999999985432211 11
Q ss_pred HHHHHh----------hcCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725 309 GERKAK----------ELNVMFIETSAKAGYNVKQLFRRVAAALPG 344 (355)
Q Consensus 309 ~~~~~~----------~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~ 344 (355)
...+.. .++.+++++||++|.||++++++|.+.++.
T Consensus 239 ~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 239 ARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 111211 124689999999999999999999988754
No 213
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.20 E-value=2.2e-11 Score=108.93 Aligned_cols=100 Identities=17% Similarity=0.144 Sum_probs=80.8
Q ss_pred cccccccccccccCCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCC-HHHHHHHHhhcC
Q psy15725 240 QERFRSLIPSYIRDSTVAVVVYDITNAN-SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVS-TEEGERKAKELN 317 (355)
Q Consensus 240 ~~~~~~~~~~~~~~~~~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~-~~~~~~~~~~~~ 317 (355)
++.+..+.+.+++++|.+++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+++.+. .++...+.+..+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 5667777788999999999999999886 88888899987765 689999999999997554322 233445556678
Q ss_pred cEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725 318 VMFIETSAKAGYNVKQLFRRVAAAL 342 (355)
Q Consensus 318 ~~~~~~SA~~~~gv~~l~~~l~~~i 342 (355)
++++++||++|.|++++++.+...+
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l~G~i 167 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYLEGFI 167 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHTTTCE
T ss_pred CeEEEEECCCCCCHHHHHhhccCcE
Confidence 8999999999999999999876543
No 214
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.20 E-value=6.5e-12 Score=113.20 Aligned_cols=88 Identities=23% Similarity=0.288 Sum_probs=69.7
Q ss_pred cccccceeeeeeeeeecCcEEEEEEEecCCcccccccccccccCccEEEEEEECC----------CcchhhhHHHHHHHH
Q psy15725 65 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT----------NANSFHQTSKWIDDV 134 (355)
Q Consensus 65 ~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~ 134 (355)
..+|+|+...... .+.+.+++|||+|++.++.+|..++++++++|+|||++ +.++|.....|+..+
T Consensus 145 ~~~TiGi~~~~~~----~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i 220 (340)
T 4fid_A 145 RTKTTGIHEYDFV----VKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDI 220 (340)
T ss_dssp CCCCCSCEEEEEE----SSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHH
T ss_pred ccceeeeEEEEEE----eeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHH
Confidence 4456665443332 34578999999999999999999999999999999998 678888887777776
Q ss_pred hhhcCCceEEeeccccccccccccccccCccccCccccccccccCCCccEEEEEeecCCCCc
Q psy15725 135 RTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 196 (355)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~ 196 (355)
... ....++|++|++||+|+..
T Consensus 221 ~~~----------------------------------------~~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 221 MTN----------------------------------------EFLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp HHC----------------------------------------GGGTTSEEEEEEECHHHHH
T ss_pred hhh----------------------------------------hccCCCeEEEEEECchhhh
Confidence 532 2224799999999999854
No 215
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.20 E-value=1.4e-11 Score=106.82 Aligned_cols=107 Identities=5% Similarity=-0.071 Sum_probs=76.7
Q ss_pred CCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHH---HHH-hhc-CCCceEEEEeeC-CCCCCcccCCHHHHH
Q psy15725 237 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID---DVR-TER-GSDVIIMLVGNK-TDLSDKRQVSTEEGE 310 (355)
Q Consensus 237 ~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~---~i~-~~~-~~~~piilv~nK-~Dl~~~~~v~~~~~~ 310 (355)
.+|+..++.+|+.||.++|++|||+|++|...++ ..+.+. .+. +.. ..+.|+++.+|| .|+. ...+..+..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp--~Ams~~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTS--CBCCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCccccc--CCCCHHHHH
Confidence 4688999999999999999999999999988654 333222 222 221 268999999997 5874 334444433
Q ss_pred HHHh----hcCcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725 311 RKAK----ELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346 (355)
Q Consensus 311 ~~~~----~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~ 346 (355)
+... ...|.++.|||++|+|+.|.++||.+.+.+++
T Consensus 271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 3221 24589999999999999999999999997665
No 216
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.19 E-value=2.4e-11 Score=113.18 Aligned_cols=107 Identities=16% Similarity=0.179 Sum_probs=85.9
Q ss_pred EEEEEeCCCccccccccc-------ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCccc
Q psy15725 231 RLQLWDTAGQERFRSLIP-------SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ 303 (355)
Q Consensus 231 ~~~i~D~~g~~~~~~~~~-------~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 303 (355)
.+.+|||+|...+..+.. .++..+|++++|+|.+.. .....|+..+.+ .++|+++|+||+|+.+.+.
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~---~~~piIvV~NK~Dl~~~~~ 157 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPT---PYEDDVVNLFKE---MEIPFVVVVNKIDVLGEKA 157 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHH---TTCCEEEECCCCTTTTCCC
T ss_pred eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHh---cCCCEEEEEeCcCCCCccH
Confidence 678999999887766533 368889999999998322 233567777766 4899999999999976554
Q ss_pred CCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 304 VSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 304 v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
. +....+.+..+++++++||++|.|++++|++|.+.++..
T Consensus 158 ~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 158 E--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp T--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred H--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 4 455566667788999999999999999999999999766
No 217
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.19 E-value=4.5e-12 Score=110.85 Aligned_cols=158 Identities=18% Similarity=0.238 Sum_probs=112.7
Q ss_pred CCcceeEEEEEcCC---------CCChhHHHHHhhh---cCCCCCceeeeecccceeeecccCCCCCccccccceeeeee
Q psy15725 9 NPLRKFKLVFLGEQ---------SVGKTSLITRFMY---DSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSK 76 (355)
Q Consensus 9 ~~~~~~~I~vvG~~---------~vGKStLl~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 76 (355)
...+.+||+++|++ |||||||+++|++ ..+...+.|++. +.++...
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~----------------------~~~~~~~ 72 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLS----------------------TSDFGGR 72 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEEC----------------------HHHHTST
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCccc----------------------cccccee
Confidence 35667999999999 9999999999998 445444444431 1111111
Q ss_pred e--------------eeecCcEEEEEEEe-----------------------cCCccccccccccccc------------
Q psy15725 77 T--------------MYLEDRTVRLQLWD-----------------------TAGQERFRSLIPSYIR------------ 107 (355)
Q Consensus 77 ~--------------~~~~~~~~~~~i~D-----------------------~~g~~~~~~~~~~~~~------------ 107 (355)
. ..+++..+.+.+|| ++|+++|..++..+++
T Consensus 73 ~i~~~~~~~~~~~~~~~~~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~ 152 (255)
T 3c5h_A 73 VVNNDHFLYWGEVSRSLEDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFE 152 (255)
T ss_dssp TTTTCSEEEEEEEC---------CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSC
T ss_pred EeecccccccccccccccCCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhcccccccccccc
Confidence 1 12356678899999 7788888888888887
Q ss_pred ---------CccEEEEEEECCCc--chhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccccccc
Q psy15725 108 ---------DSTVAVVVYDITNA--NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVR 176 (355)
Q Consensus 108 ---------~~d~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (355)
++|++++|||++++ .+|+.+..|+.++....
T Consensus 153 ~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~-------------------------------------- 194 (255)
T 3c5h_A 153 QKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQL-------------------------------------- 194 (255)
T ss_dssp CCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHH--------------------------------------
T ss_pred ccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHh--------------------------------------
Confidence 79999999999998 99999999999886431
Q ss_pred ccCCCccEEEEEeecCCCCcccceehhhhhhhhhc-cCeEEEEeeeeeccccceE
Q psy15725 177 TERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGYNVKQV 230 (355)
Q Consensus 177 ~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~-~~~~~~~~sa~~~~~v~~i 230 (355)
...++|+++|+||+|+...+.+ .+..+++.. .+.+++++|+.++.+++.+
T Consensus 195 --~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~el 245 (255)
T 3c5h_A 195 --AKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLA 245 (255)
T ss_dssp --HHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHH
T ss_pred --ccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHH
Confidence 1137999999999999765554 355566655 4789999999999887754
No 218
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.17 E-value=7.1e-12 Score=109.49 Aligned_cols=105 Identities=12% Similarity=0.147 Sum_probs=78.9
Q ss_pred EEEEEEeCCCcccccc----------cccccc--cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCC
Q psy15725 230 VRLQLWDTAGQERFRS----------LIPSYI--RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 297 (355)
Q Consensus 230 i~~~i~D~~g~~~~~~----------~~~~~~--~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 297 (355)
..+.+||+||...+.. +...++ ..+|++++|+|+++..+.. .+...+.+ .++|+++|+||+|
T Consensus 48 ~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~---~l~~~l~~---~~~pvilv~NK~D 121 (256)
T 3iby_A 48 HLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHL---YLTSQLFE---LGKPVVVALNMMD 121 (256)
T ss_dssp EEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHH---HHHHHHTT---SCSCEEEEEECHH
T ss_pred eEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHH---HHHHHHHH---cCCCEEEEEEChh
Confidence 4778999999877653 445556 7899999999998754333 23333333 4899999999999
Q ss_pred CCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHH
Q psy15725 298 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 341 (355)
Q Consensus 298 l~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~ 341 (355)
+...+.+.. ....+.+..+++++++||++|.|++++|++|.+.
T Consensus 122 l~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 122 IAEHRGISI-DTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp HHHHTTCEE-CHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred cCCcCCcHH-HHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 865443322 2334666778999999999999999999999987
No 219
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.13 E-value=7.2e-11 Score=108.01 Aligned_cols=89 Identities=19% Similarity=0.200 Sum_probs=54.6
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCC-CCceeeeecccceeeecccCCCCCccccccceeeee--------eeeeec---
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLS--------KTMYLE--- 81 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~--------~~~~~~--- 81 (355)
++|+++|.+|||||||+|++++.... ..++. .+..|+++..... ......
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~------------------~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~ 63 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPF------------------ATIDKNVGVVPLEDERLYALQRTFAKGERV 63 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCG------------------GGGSTTEEEEECCCHHHHHHHHHHCBTTBC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCC------------------ceeccceeeEecChHHHHHHHHHhcccccc
Confidence 57999999999999999999985411 11110 0123333321100 000001
Q ss_pred --CcEEEEEEEecCCccccc----cccc---ccccCccEEEEEEECCC
Q psy15725 82 --DRTVRLQLWDTAGQERFR----SLIP---SYIRDSTVAVVVYDITN 120 (355)
Q Consensus 82 --~~~~~~~i~D~~g~~~~~----~~~~---~~~~~~d~ii~v~d~~~ 120 (355)
.....+.+|||||+.++. .+.. ..++.+|++++|+|+++
T Consensus 64 ~~~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 64 PPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccCCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 123579999999987643 2222 34789999999999986
No 220
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.12 E-value=1.3e-11 Score=109.08 Aligned_cols=109 Identities=16% Similarity=0.168 Sum_probs=80.2
Q ss_pred EEEEEEeCCCccccccc----------ccccc--cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCC
Q psy15725 230 VRLQLWDTAGQERFRSL----------IPSYI--RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 297 (355)
Q Consensus 230 i~~~i~D~~g~~~~~~~----------~~~~~--~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 297 (355)
..+.+||++|...+... +..++ ..+|++++|+|+++.... ..+...+.+ .++|+++|+||+|
T Consensus 50 ~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~---~~~~~~l~~---~~~p~ivv~NK~D 123 (274)
T 3i8s_A 50 HQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLD 123 (274)
T ss_dssp CEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHH---HHHHHHHHH---HTCCEEEEEECHH
T ss_pred CceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHH---HHHHHHHHh---cCCCEEEEEECcc
Confidence 35678999998876632 22222 689999999998875433 334444444 3799999999999
Q ss_pred CCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 298 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 298 l~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
+...+.+.. ....+.+..+++++++||++|.|++++|++|.+.++..
T Consensus 124 l~~~~~~~~-~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 124 IAEKQNIRI-EIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp HHHHTTEEE-CHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred chhhhhHHH-HHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 864433221 23456667789999999999999999999999988765
No 221
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.12 E-value=2.3e-10 Score=104.45 Aligned_cols=102 Identities=10% Similarity=0.079 Sum_probs=60.5
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHH
Q psy15725 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEG 309 (355)
Q Consensus 230 i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~ 309 (355)
+.+.++||+|-... .......+|.+++|+|.+.+...+.+. ..+ .+.|.++|+||+|+.+..... ...
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~---~~i-----l~~~~ivVlNK~Dl~~~~~~~-~~~ 234 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIK---RGI-----IEMADLVAVTKSDGDLIVPAR-RIQ 234 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHHH-HHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhH---HHH-----HhcCCEEEEeeecCCCchhHH-HHH
Confidence 34668899884211 123456899999999988654322111 111 356889999999985321110 011
Q ss_pred HHHHh----------hcCcEEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725 310 ERKAK----------ELNVMFIETSAKAGYNVKQLFRRVAAALP 343 (355)
Q Consensus 310 ~~~~~----------~~~~~~~~~SA~~~~gv~~l~~~l~~~i~ 343 (355)
..+.. .++.+++++||++|.|+++++++|.+.+.
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 11111 12358999999999999999999988753
No 222
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.09 E-value=4.9e-10 Score=98.12 Aligned_cols=113 Identities=16% Similarity=-0.008 Sum_probs=69.2
Q ss_pred EEEEEEeCCCccccccccc------ccccCCcEEEEEEeCCCcccHHHHHHHHHHH-HhhcCCCceEEEEeeCCCCCCcc
Q psy15725 230 VRLQLWDTAGQERFRSLIP------SYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIMLVGNKTDLSDKR 302 (355)
Q Consensus 230 i~~~i~D~~g~~~~~~~~~------~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~piilv~nK~Dl~~~~ 302 (355)
+.+.++||+|......... ..+.. +.+++++|.+......+........ ......++|+++|+||+|+.+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 4577999999766543322 13456 8899999876544433332211111 11111478999999999986443
Q ss_pred cCCHHHH---------HH-----------------HHhhcC--cEEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725 303 QVSTEEG---------ER-----------------KAKELN--VMFIETSAKAGYNVKQLFRRVAAALP 343 (355)
Q Consensus 303 ~v~~~~~---------~~-----------------~~~~~~--~~~~~~SA~~~~gv~~l~~~l~~~i~ 343 (355)
.+..... .. +++..+ ++++++||++|.|+++++++|.+.+.
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 2100000 00 012222 48999999999999999999998765
No 223
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.09 E-value=2.6e-11 Score=103.12 Aligned_cols=103 Identities=17% Similarity=0.250 Sum_probs=74.3
Q ss_pred ceEEEEEEeCCCcccccccccccccC----CcEEEEEEeCC-CcccHHHHHHHHHHHHhh----cCCCceEEEEeeCCCC
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRD----STVAVVVYDIT-NANSFHQTSKWIDDVRTE----RGSDVIIMLVGNKTDL 298 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~----~~~vi~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl 298 (355)
....+.+||++|.+.++..+..++.. ++++++|+|++ +..++.....|+..+... ...++|+++|+||+|+
T Consensus 53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 132 (218)
T 1nrj_B 53 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 132 (218)
T ss_dssp GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHh
Confidence 45567899999999998888888877 89999999999 888888888888777554 2368999999999999
Q ss_pred CCcccCC------HHHHHHHHhhcCcEEEEecCCCCCC
Q psy15725 299 SDKRQVS------TEEGERKAKELNVMFIETSAKAGYN 330 (355)
Q Consensus 299 ~~~~~v~------~~~~~~~~~~~~~~~~~~SA~~~~g 330 (355)
.+.+.+. ..+...++...+++++++||++|.+
T Consensus 133 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 133 FTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 7655433 3334455555567888899988765
No 224
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.04 E-value=5.8e-11 Score=112.60 Aligned_cols=109 Identities=19% Similarity=0.267 Sum_probs=78.6
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCc--ccCCHH
Q psy15725 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK--RQVSTE 307 (355)
Q Consensus 230 i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~--~~v~~~ 307 (355)
..+.+|||||++.|...+...+..+|++++|+|+++....+....+ ..+.. .++|+++++||+|+.+. +.+...
T Consensus 51 ~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l-~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~ 126 (501)
T 1zo1_I 51 GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAI-QHAKA---AQVPVVVAVNKIDKPEADPDRVKNE 126 (501)
T ss_dssp SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHH-HHHHH---TTCCEEEEEECSSSSTTCCCCTTCC
T ss_pred EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHH-HHHHh---cCceEEEEEEeccccccCHHHHHHH
Confidence 4678999999999999999999999999999999885443332222 22222 58999999999999642 222111
Q ss_pred HH--HHHHhhcC--cEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725 308 EG--ERKAKELN--VMFIETSAKAGYNVKQLFRRVAAAL 342 (355)
Q Consensus 308 ~~--~~~~~~~~--~~~~~~SA~~~~gv~~l~~~l~~~i 342 (355)
.. ..+...++ ++++++||++|.||+++|++|....
T Consensus 127 l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~~ 165 (501)
T 1zo1_I 127 LSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQA 165 (501)
T ss_dssp CCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTTTC
T ss_pred HHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhhhh
Confidence 10 01112222 6999999999999999999998653
No 225
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.01 E-value=7.3e-10 Score=109.49 Aligned_cols=102 Identities=17% Similarity=0.163 Sum_probs=61.8
Q ss_pred EEEEEecCCccc-------------ccccccccc-cCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccc
Q psy15725 86 RLQLWDTAGQER-------------FRSLIPSYI-RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIE 151 (355)
Q Consensus 86 ~~~i~D~~g~~~-------------~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (355)
.+.++||||... +......++ ..+|++++|+|++....-.....+...+.
T Consensus 151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~---------------- 214 (772)
T 3zvr_A 151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---------------- 214 (772)
T ss_dssp SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHC----------------
T ss_pred ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHH----------------
Confidence 588999999643 122333344 57899999999988544433323444432
Q ss_pred cccccccccccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhh--hhhhccC-eEEEEeeeeeccccc
Q psy15725 152 TNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGE--RKAKELN-VMFIETSAKAGYNVK 228 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~--~~~~~~~-~~~~~~sa~~~~~v~ 228 (355)
..+.|+++|.||+|+.+.......... .+....+ .+++.+|+.++.+++
T Consensus 215 ----------------------------~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~Gvd 266 (772)
T 3zvr_A 215 ----------------------------PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKK 266 (772)
T ss_dssp ----------------------------TTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSE
T ss_pred ----------------------------hcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccch
Confidence 237899999999998654322111111 0001112 467778999888877
Q ss_pred eEE
Q psy15725 229 QVR 231 (355)
Q Consensus 229 ~i~ 231 (355)
.+.
T Consensus 267 eL~ 269 (772)
T 3zvr_A 267 DIT 269 (772)
T ss_dssp EHH
T ss_pred hHH
Confidence 643
No 226
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.00 E-value=2.3e-10 Score=105.10 Aligned_cols=91 Identities=15% Similarity=0.112 Sum_probs=48.1
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecC---------
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED--------- 82 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------- 82 (355)
..++|+++|.+|||||||+|++++..+.....|. .|+..+. ..+.+++
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~---------------------tTi~p~~--g~v~v~~~r~~~l~~~ 77 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPF---------------------CTIDPNE--SRVPVPDERFDFLCQY 77 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC----------------------------------CCSE--EEEECCCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCc---------------------cccCcee--EEEEECCccceeeccc
Confidence 4578999999999999999999986531111110 1111111 1111111
Q ss_pred ------cEEEEEEEecCCcccccc-------cccccccCccEEEEEEECCCcchhh
Q psy15725 83 ------RTVRLQLWDTAGQERFRS-------LIPSYIRDSTVAVVVYDITNANSFH 125 (355)
Q Consensus 83 ------~~~~~~i~D~~g~~~~~~-------~~~~~~~~~d~ii~v~d~~~~~s~~ 125 (355)
....+.+|||||...+.. ....+++++|++++|+|+.+.+++.
T Consensus 78 ~~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~ 133 (396)
T 2ohf_A 78 HKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDIT 133 (396)
T ss_dssp HCCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC-------
T ss_pred cCcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchh
Confidence 023599999999876443 3445678999999999998766654
No 227
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.99 E-value=5.9e-10 Score=104.89 Aligned_cols=109 Identities=17% Similarity=0.221 Sum_probs=73.2
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCccc---HHHHHHHHHHHHhhcCCCce-EEEEeeCCCCCCcc-
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS---FHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKR- 302 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s---~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~- 302 (355)
+...+.++||+|++.|...+...+..+|++++|+|+++... ++....+.+.+......++| +++++||+|+.+..
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~ 172 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 172 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccch
Confidence 45588999999999999998899999999999999988643 11111111111111114677 99999999985321
Q ss_pred -c----CCHHHHHHHHhhc------CcEEEEecCCCCCCHHHHHH
Q psy15725 303 -Q----VSTEEGERKAKEL------NVMFIETSAKAGYNVKQLFR 336 (355)
Q Consensus 303 -~----v~~~~~~~~~~~~------~~~~~~~SA~~~~gv~~l~~ 336 (355)
+ ....+...+.+.. .++++++||++|.|++++++
T Consensus 173 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 173 SNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 1 1112222333333 35899999999999999544
No 228
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.97 E-value=1.5e-09 Score=102.21 Aligned_cols=102 Identities=18% Similarity=0.201 Sum_probs=75.3
Q ss_pred eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCc-eEEEEeeCCCCCCccc--C-
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV-IIMLVGNKTDLSDKRQ--V- 304 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-piilv~nK~Dl~~~~~--v- 304 (355)
...+.+|||+|++.|...+..++..+|++++|+|+++....+. .+++..+.. .+. |+++|+||+|+.+... +
T Consensus 103 ~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~~~---~~~~~iIvviNK~Dl~~~~~~~~~ 178 (434)
T 1zun_B 103 KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASL---LGIKHIVVAINKMDLNGFDERVFE 178 (434)
T ss_dssp SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEEECTTTTTSCHHHHH
T ss_pred CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCeEEEEEEcCcCCcccHHHHH
Confidence 4578899999999998888888999999999999998765433 334433333 344 6999999999975211 1
Q ss_pred -CHHHHHHHHhhcC-----cEEEEecCCCCCCHHHH
Q psy15725 305 -STEEGERKAKELN-----VMFIETSAKAGYNVKQL 334 (355)
Q Consensus 305 -~~~~~~~~~~~~~-----~~~~~~SA~~~~gv~~l 334 (355)
...+...+++..+ ++++++||++|.||+++
T Consensus 179 ~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 179 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 1233445555566 78999999999999983
No 229
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.93 E-value=8.6e-11 Score=107.04 Aligned_cols=96 Identities=15% Similarity=0.115 Sum_probs=56.3
Q ss_pred EEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccC
Q psy15725 84 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHAN 163 (355)
Q Consensus 84 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (355)
...+.+|||||...+... ....+|++++|+|.+....++.+... .
T Consensus 148 ~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~~---~----------------------------- 192 (341)
T 2p67_A 148 GYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKKG---L----------------------------- 192 (341)
T ss_dssp TCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCHH---H-----------------------------
T ss_pred CCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHHh---h-----------------------------
Confidence 357999999997544332 35899999999999765433221110 0
Q ss_pred ccccCccccccccccCCCccEEEEEeecCCCCcccceeh--hhhhhhh---h----ccCeEEEEeeeeeccccceEE
Q psy15725 164 SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST--EEGERKA---K----ELNVMFIETSAKAGYNVKQVR 231 (355)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~--~~~~~~~---~----~~~~~~~~~sa~~~~~v~~i~ 231 (355)
.+.|.++|+||+|+.+...... .+..... . ....+++.+|+.++.+++.+.
T Consensus 193 -----------------~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~ 252 (341)
T 2p67_A 193 -----------------MEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIW 252 (341)
T ss_dssp -----------------HHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHH
T ss_pred -----------------hcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHH
Confidence 1578899999999865322111 1111110 1 114578899999988877643
No 230
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.91 E-value=2.7e-10 Score=108.10 Aligned_cols=107 Identities=18% Similarity=0.251 Sum_probs=63.5
Q ss_pred eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcc---cHHHHHHHHHHHHhhcCCCce-EEEEeeCCCCCCccc-
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN---SFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKRQ- 303 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~- 303 (355)
...+.+|||+|++.|...+...+..+|++|+|+|+++.. +|+....+.+.+......++| +++++||+|+.+...
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence 467899999999999998888999999999999999863 222211222222111125787 999999999953210
Q ss_pred -----CCHHHHHHHHhhc-------CcEEEEecCCCCCCHHHHH
Q psy15725 304 -----VSTEEGERKAKEL-------NVMFIETSAKAGYNVKQLF 335 (355)
Q Consensus 304 -----v~~~~~~~~~~~~-------~~~~~~~SA~~~~gv~~l~ 335 (355)
....+...+++.. .++++++||++|.|+++++
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 1112233444443 4689999999999998754
No 231
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.90 E-value=1.5e-09 Score=103.57 Aligned_cols=105 Identities=17% Similarity=0.114 Sum_probs=69.3
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHH-----HHHHHHHHHhhcCCCceEEEEeeCCCCCCcc
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-----TSKWIDDVRTERGSDVIIMLVGNKTDLSDKR 302 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~-----~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 302 (355)
....+.||||+|++.|...+..++..+|++++|+|++++..... ...+...+.... ...|+++|+||+|+.+.+
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTTC
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCcccch
Confidence 34678999999999999999999999999999999998754322 112222222221 235699999999986533
Q ss_pred cCCHHHH----HHHHhhc-----CcEEEEecCCCCCCHHH
Q psy15725 303 QVSTEEG----ERKAKEL-----NVMFIETSAKAGYNVKQ 333 (355)
Q Consensus 303 ~v~~~~~----~~~~~~~-----~~~~~~~SA~~~~gv~~ 333 (355)
+...++. ..+.... +++++++||++|.||++
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 2222222 2222222 46899999999999974
No 232
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.82 E-value=1.2e-08 Score=92.57 Aligned_cols=103 Identities=14% Similarity=0.140 Sum_probs=58.7
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHH
Q psy15725 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEG 309 (355)
Q Consensus 230 i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~ 309 (355)
..+.++||+|-..-. ......+|.+++++|.+.....+.+.. .+ .+.|.++++||+|+...........
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~---~i-----~~~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKK---GI-----FELADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCT---TH-----HHHCSEEEEECCSTTCCHHHHHHHH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHH---HH-----hccccEEEEEchhccCchhHHHHHH
Confidence 345677888743211 122457899999998764322111100 11 1346677889999743221111111
Q ss_pred HHHHh----h------cCcEEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725 310 ERKAK----E------LNVMFIETSAKAGYNVKQLFRRVAAALP 343 (355)
Q Consensus 310 ~~~~~----~------~~~~~~~~SA~~~~gv~~l~~~l~~~i~ 343 (355)
..+.. . ++.+++++||+++.|++++++.|.+...
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 12211 0 1347999999999999999999988764
No 233
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.78 E-value=1.7e-09 Score=101.73 Aligned_cols=105 Identities=15% Similarity=0.256 Sum_probs=73.1
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhh----cCCCc-eEEEEeeCCCCCCcc
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE----RGSDV-IIMLVGNKTDLSDKR 302 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~-piilv~nK~Dl~~~~ 302 (355)
....+.+|||+|++.|...+..++..+|++++|+|+++ .+++....|.....++ ...++ |+++++||+|+.+..
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence 34678999999999999888889999999999999998 4555433221111110 01354 599999999987521
Q ss_pred ------cCCHHHHHHHHhhcC-----cEEEEecCCCCCCHHH
Q psy15725 303 ------QVSTEEGERKAKELN-----VMFIETSAKAGYNVKQ 333 (355)
Q Consensus 303 ------~v~~~~~~~~~~~~~-----~~~~~~SA~~~~gv~~ 333 (355)
....++...+++..+ ++++++||++|.|+.+
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e 202 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 202 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccc
Confidence 111233444555544 6899999999999974
No 234
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.76 E-value=2.4e-09 Score=95.59 Aligned_cols=109 Identities=18% Similarity=0.176 Sum_probs=73.9
Q ss_pred EEEEEEeCCCcc-------------cccccccccccCCcEEE-EEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeC
Q psy15725 230 VRLQLWDTAGQE-------------RFRSLIPSYIRDSTVAV-VVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNK 295 (355)
Q Consensus 230 i~~~i~D~~g~~-------------~~~~~~~~~~~~~~~vi-~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK 295 (355)
..+.+|||||.. .+..++..++..++.++ +|+|.++..+..+...+...+.. .+.|+++|+||
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~---~~~~~i~V~NK 201 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP---QGQRTIGVITK 201 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT---TCSSEEEEEEC
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCC---CCCeEEEEEEc
Confidence 467899999953 34455667777888766 68998876554443344444433 57999999999
Q ss_pred CCCCCcccCCHHHHHHH--HhhcC-cEEEEecCCCCCCHHHHHHHHHHH
Q psy15725 296 TDLSDKRQVSTEEGERK--AKELN-VMFIETSAKAGYNVKQLFRRVAAA 341 (355)
Q Consensus 296 ~Dl~~~~~v~~~~~~~~--~~~~~-~~~~~~SA~~~~gv~~l~~~l~~~ 341 (355)
+|+.+............ ....+ .+++++||++|.|+++++++|.+.
T Consensus 202 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 202 LDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp GGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred cccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 99975543222221110 01123 378999999999999999998874
No 235
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.76 E-value=4.7e-09 Score=102.50 Aligned_cols=107 Identities=15% Similarity=0.169 Sum_probs=70.7
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcc---cHHHHHHHHHHHHhhcCCC-ceEEEEeeCCCCCCccc
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN---SFHQTSKWIDDVRTERGSD-VIIMLVGNKTDLSDKRQ 303 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~---s~~~~~~~~~~i~~~~~~~-~piilv~nK~Dl~~~~~ 303 (355)
....+.||||+|++.|...+..++..+|++++|+|++++. ++.....+.+.+......+ .|+++|+||+|+.+.+.
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence 3457899999999999999999999999999999998742 1100111111111111134 45999999999975322
Q ss_pred CCH----HHHHHHHhhc-----CcEEEEecCCCCCCHHHH
Q psy15725 304 VST----EEGERKAKEL-----NVMFIETSAKAGYNVKQL 334 (355)
Q Consensus 304 v~~----~~~~~~~~~~-----~~~~~~~SA~~~~gv~~l 334 (355)
... .+...+.... +++++++||++|.||+++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 111 1222233332 369999999999999865
No 236
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.74 E-value=4.8e-09 Score=99.23 Aligned_cols=102 Identities=16% Similarity=0.133 Sum_probs=70.9
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCccc---H----HHHHHHHHHHHhhcCCCce-EEEEeeCCCCC
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS---F----HQTSKWIDDVRTERGSDVI-IMLVGNKTDLS 299 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s---~----~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 299 (355)
+...+.+|||+|++.|...+...+..+|++++|+|+++... | +.. ++...+.. .++| +++++||+|+.
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~-~~~~~~~~---~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTR-EHALLAFT---LGVRQLIVAVNKMDSV 158 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHH-HHHHHHHH---TTCCEEEEEEECGGGG
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHH-HHHHHHHH---cCCCeEEEEEEccccc
Confidence 35678999999999999888888999999999999987531 2 221 22222222 4665 99999999986
Q ss_pred Cccc----CCHHHHHHHHhhcC-----cEEEEecCCCCCCHHH
Q psy15725 300 DKRQ----VSTEEGERKAKELN-----VMFIETSAKAGYNVKQ 333 (355)
Q Consensus 300 ~~~~----v~~~~~~~~~~~~~-----~~~~~~SA~~~~gv~~ 333 (355)
+.+. ....+...+++..+ ++++++||++|.|+++
T Consensus 159 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 159 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 3111 11122334444443 6899999999999873
No 237
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.74 E-value=1.6e-08 Score=90.34 Aligned_cols=92 Identities=17% Similarity=0.145 Sum_probs=73.3
Q ss_pred cccccccccccccCccEEEEEEECCCcc-hhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725 95 QERFRSLIPSYIRDSTVAVVVYDITNAN-SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID 173 (355)
Q Consensus 95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (355)
++++..+.+.+++++|++++|+|++++. ++..+..|+..+..
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~------------------------------------- 108 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY------------------------------------- 108 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-------------------------------------
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-------------------------------------
Confidence 5778888889999999999999999986 88888999887654
Q ss_pred cccccCCCccEEEEEeecCCCCccccee-hhhhhhhhhccCeEEEEeeeeeccccceE
Q psy15725 174 DVRTERGSDVIIMLVGNKTDLSDKRQVS-TEEGERKAKELNVMFIETSAKAGYNVKQV 230 (355)
Q Consensus 174 ~~~~~~~~~~piilv~nK~D~~~~~~v~-~~~~~~~~~~~~~~~~~~sa~~~~~v~~i 230 (355)
.++|+++|+||+|+.++..+. ..+...+....+.+++.+|+.++.+++.+
T Consensus 109 -------~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L 159 (302)
T 2yv5_A 109 -------FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDEL 159 (302)
T ss_dssp -------TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred -------CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHH
Confidence 279999999999997544322 23344555566789999999999887754
No 238
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.70 E-value=3.3e-09 Score=97.23 Aligned_cols=108 Identities=17% Similarity=0.259 Sum_probs=56.8
Q ss_pred eEEEEEEeCCCc-------cccccccc-------ccccCC-------------cEEEEEEeCCCcccHHHHH-HHHHHHH
Q psy15725 229 QVRLQLWDTAGQ-------ERFRSLIP-------SYIRDS-------------TVAVVVYDITNANSFHQTS-KWIDDVR 280 (355)
Q Consensus 229 ~i~~~i~D~~g~-------~~~~~~~~-------~~~~~~-------------~~vi~v~d~~~~~s~~~~~-~~~~~i~ 280 (355)
.+.+.+|||+|. +.+..++. .++..+ +++++.++.+ ..++..+. .++..+
T Consensus 94 ~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l- 171 (361)
T 2qag_A 94 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI- 171 (361)
T ss_dssp EEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT-
T ss_pred ccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh-
Confidence 457899999997 56665554 333332 3444444431 34444443 344443
Q ss_pred hhcCCCceEEEEeeCCCCCCcccCCH--HHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725 281 TERGSDVIIMLVGNKTDLSDKRQVST--EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342 (355)
Q Consensus 281 ~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i 342 (355)
..++|+|+|+||+|+.+.+.+.. .....+++..+++++++||++|.| ++.|.++.+.+
T Consensus 172 ---~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i 231 (361)
T 2qag_A 172 ---HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLL 231 (361)
T ss_dssp ---CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHH
T ss_pred ---ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHH
Confidence 26899999999999987665543 455666777889999999999998 76666665554
No 239
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.68 E-value=2.1e-08 Score=91.98 Aligned_cols=98 Identities=22% Similarity=0.327 Sum_probs=73.6
Q ss_pred CcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHH----HHHh
Q psy15725 239 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGE----RKAK 314 (355)
Q Consensus 239 g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~----~~~~ 314 (355)
..+.|+.....++..++++++|+|++++. ..|...+.+.. .++|+++|+||+|+.... ...+... ..++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 46778888888899999999999998753 34555555544 489999999999996432 2222222 2345
Q ss_pred hcCc---EEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725 315 ELNV---MFIETSAKAGYNVKQLFRRVAAALP 343 (355)
Q Consensus 315 ~~~~---~~~~~SA~~~~gv~~l~~~l~~~i~ 343 (355)
..++ +++++||++|.|+++++++|.+...
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence 5666 8999999999999999999987653
No 240
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.66 E-value=1.5e-09 Score=105.66 Aligned_cols=114 Identities=23% Similarity=0.231 Sum_probs=69.3
Q ss_pred eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcc---cH--HH-HHHHHHHHHhhcCCCce-EEEEeeCCCCCCc
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN---SF--HQ-TSKWIDDVRTERGSDVI-IMLVGNKTDLSDK 301 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~---s~--~~-~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~ 301 (355)
...+.||||+|++.|...+...+..+|++|+|+|++++. .+ .. ..+.+..+.. .++| +|+|+||+|+.+.
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~~~ 330 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLMSW 330 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGGTT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEeccccccc
Confidence 457789999999999999999999999999999998643 11 11 1122222222 4676 9999999998642
Q ss_pred ccCC----HHHHHHHH-hhcC-----cEEEEecCCCCCCHH--------------HHHHHHHHHcCCC
Q psy15725 302 RQVS----TEEGERKA-KELN-----VMFIETSAKAGYNVK--------------QLFRRVAAALPGM 345 (355)
Q Consensus 302 ~~v~----~~~~~~~~-~~~~-----~~~~~~SA~~~~gv~--------------~l~~~l~~~i~~~ 345 (355)
.... ..+...+. +..+ ++++++||++|.||+ +|++.|...++..
T Consensus 331 ~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~pp~ 398 (592)
T 3mca_A 331 SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVPPE 398 (592)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCCCS
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcccc
Confidence 1111 12222333 3334 489999999999998 7999998887743
No 241
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.57 E-value=3e-08 Score=86.60 Aligned_cols=115 Identities=13% Similarity=0.106 Sum_probs=71.1
Q ss_pred eEEEEEEeCCCcccccccc-----------cccccCCcEEEEEEeCCCcccH-HHHHHHHHHHHhhcCCCceEEEEee-C
Q psy15725 229 QVRLQLWDTAGQERFRSLI-----------PSYIRDSTVAVVVYDITNANSF-HQTSKWIDDVRTERGSDVIIMLVGN-K 295 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~-----------~~~~~~~~~vi~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~piilv~n-K 295 (355)
...+.++||||...+.... ..+++.+|++++|+|+++.... ..+..++..+.... .+.|+++++| |
T Consensus 70 ~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK 148 (260)
T 2xtp_A 70 NREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHK 148 (260)
T ss_dssp TEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECG
T ss_pred CCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcc
Confidence 4568899999976553322 2267889999999999862221 11223333332111 1456666666 9
Q ss_pred CCCCCcccCCH-------HHHHHHHhhcCcE---E--EEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 296 TDLSDKRQVST-------EEGERKAKELNVM---F--IETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 296 ~Dl~~~~~v~~-------~~~~~~~~~~~~~---~--~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
+|+... .+.. .....+.+..+.. + +++||++|.|++++|++|.+.++..
T Consensus 149 ~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 149 EDLNGG-SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp GGGTTC-CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCc-cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 998632 1111 1222344444321 2 7899999999999999999988753
No 242
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.54 E-value=5e-08 Score=96.84 Aligned_cols=112 Identities=11% Similarity=0.164 Sum_probs=79.2
Q ss_pred EEEEEeCCCccc---ccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725 231 RLQLWDTAGQER---FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE 307 (355)
Q Consensus 231 ~~~i~D~~g~~~---~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~ 307 (355)
.+.++||||... ....+..++..+|++++|+|++++.+..+...|...+.. .+.|+++|+||+|+.....+..+
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~---~~~~iiiVlNK~Dl~~~~~~~~e 251 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG---RGLTVFFLVNAWDQVRESLIDPD 251 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT---SCCCEEEEEECGGGGGGGCSSTT
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh---hCCCEEEEEECcccccccccChh
Confidence 478999999554 334566788999999999999988877666555444433 47899999999998644322111
Q ss_pred ----------HH-----HHHHhh--------cCcEEEEecCC--------------CCCCHHHHHHHHHHHcCCC
Q psy15725 308 ----------EG-----ERKAKE--------LNVMFIETSAK--------------AGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 308 ----------~~-----~~~~~~--------~~~~~~~~SA~--------------~~~gv~~l~~~l~~~i~~~ 345 (355)
.. ..+... ...+++++||+ ++.|+++++++|.+.+...
T Consensus 252 e~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~~ 326 (695)
T 2j69_A 252 DVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTRE 326 (695)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHHh
Confidence 01 112111 12479999999 9999999999999877543
No 243
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.54 E-value=3.4e-08 Score=90.73 Aligned_cols=98 Identities=24% Similarity=0.295 Sum_probs=72.0
Q ss_pred CcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHH----HHHh
Q psy15725 239 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGE----RKAK 314 (355)
Q Consensus 239 g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~----~~~~ 314 (355)
.++.|++....++..++++++|+|+++..+ .|...+.+.. .++|+++|+||+|+.... ...+... ...+
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence 467888888888899999999999998764 3444444433 479999999999996432 2222222 2345
Q ss_pred hcCc---EEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725 315 ELNV---MFIETSAKAGYNVKQLFRRVAAALP 343 (355)
Q Consensus 315 ~~~~---~~~~~SA~~~~gv~~l~~~l~~~i~ 343 (355)
..++ +++++||++|.|++++++.|.+...
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 5665 7999999999999999999987654
No 244
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.53 E-value=1.4e-07 Score=86.78 Aligned_cols=87 Identities=17% Similarity=0.237 Sum_probs=53.9
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCC-ccccccceeeeeeeeeecC-------
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLED------- 82 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~------- 82 (355)
....+|+++|++|||||||+|+|++...... ..++. +..|+.+ .+.+++
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~-----------------~~~p~tTi~p~~G------~v~v~~~r~~~l~ 74 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNP-----------------ANYPYATIDPEEA------KVAVPDERFDWLC 74 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTST-----------------TCCSSCCCCTTEE------EEEECCHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccc-----------------cCCCceeecceee------eeeeCCcchhhhh
Confidence 3457999999999999999999999553111 11111 1122222 111111
Q ss_pred ------c--EEEEEEEecCCccc-------ccccccccccCccEEEEEEECCC
Q psy15725 83 ------R--TVRLQLWDTAGQER-------FRSLIPSYIRDSTVAVVVYDITN 120 (355)
Q Consensus 83 ------~--~~~~~i~D~~g~~~-------~~~~~~~~~~~~d~ii~v~d~~~ 120 (355)
+ ...+.+||+||... +.......++.+|++++|+|+.+
T Consensus 75 ~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 75 EAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp HHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred hhcccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1 13589999999643 22223345678999999999976
No 245
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.52 E-value=1.1e-07 Score=81.98 Aligned_cols=114 Identities=13% Similarity=0.105 Sum_probs=74.3
Q ss_pred eEEEEEEeCCCc-----------ccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC--CCceEEEEeeC
Q psy15725 229 QVRLQLWDTAGQ-----------ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG--SDVIIMLVGNK 295 (355)
Q Consensus 229 ~i~~~i~D~~g~-----------~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK 295 (355)
...+.+|||+|. ..+...+..++++++++++|+|+++.... ...++..+..... ...|+++|+||
T Consensus 77 ~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 77 ETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeC
Confidence 456789999993 34445555667889999999998754442 1233333322110 34699999999
Q ss_pred CCCCCcccCC------HHHHHHHHhhcCcEEEEecCCCC-----CCHHHHHHHHHHHcCC
Q psy15725 296 TDLSDKRQVS------TEEGERKAKELNVMFIETSAKAG-----YNVKQLFRRVAAALPG 344 (355)
Q Consensus 296 ~Dl~~~~~v~------~~~~~~~~~~~~~~~~~~SA~~~-----~gv~~l~~~l~~~i~~ 344 (355)
+|+...+.+. ......+.+.++..++.+++..+ .||.++|+.+.+.+..
T Consensus 155 ~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 155 KDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp GGGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 9986544332 23455667777777777766643 7999999999888854
No 246
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.52 E-value=3.6e-08 Score=83.28 Aligned_cols=73 Identities=18% Similarity=0.262 Sum_probs=56.1
Q ss_pred eEEEEEEeCCCcccccc-cccccccCCcEEEEEEeCCCcc-cHHHHHHH-HHHHHhh--cCCCceEEEEeeCCCCCCc
Q psy15725 229 QVRLQLWDTAGQERFRS-LIPSYIRDSTVAVVVYDITNAN-SFHQTSKW-IDDVRTE--RGSDVIIMLVGNKTDLSDK 301 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~-~~~~~~~~~~~vi~v~d~~~~~-s~~~~~~~-~~~i~~~--~~~~~piilv~nK~Dl~~~ 301 (355)
.+.+.+||++|++.+.. ++..++..++++++|+|+++.. ++.....+ ...+... ...++|+++|+||+|+.+.
T Consensus 53 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 53 GNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp CCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred ccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence 57789999999999988 7888899999999999998843 34444443 3444331 2257999999999999754
No 247
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.48 E-value=2.1e-07 Score=85.45 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhc
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYD 36 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~ 36 (355)
..+|+++|.+|||||||+|+|++.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhh
Confidence 357999999999999999999985
No 248
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.48 E-value=1.3e-07 Score=86.76 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDS 37 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~ 37 (355)
..+|+++|.+|||||||+|++++..
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhh
Confidence 3579999999999999999999853
No 249
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.46 E-value=4.5e-07 Score=86.09 Aligned_cols=101 Identities=15% Similarity=0.122 Sum_probs=60.6
Q ss_pred EEEEEEeCCCcccccc-ccccc-----ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceE-EEEeeCCCCCCcc
Q psy15725 230 VRLQLWDTAGQERFRS-LIPSY-----IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII-MLVGNKTDLSDKR 302 (355)
Q Consensus 230 i~~~i~D~~g~~~~~~-~~~~~-----~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl~~~~ 302 (355)
+.+.|+||+|...... ++... +..++.+++|+|.+...... .....+.+ .+|+ ++|+||.|.....
T Consensus 184 ~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~----~~~i~gvVlNK~D~~~~~ 256 (504)
T 2j37_W 184 FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD----KVDVASVIVTKLDGHAKG 256 (504)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH----HHCCCCEEEECTTSCCCC
T ss_pred CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh----hcCceEEEEeCCccccch
Confidence 3566889998543211 11100 22688999999988764321 22223322 2675 8999999975321
Q ss_pred cCCHHHHHHHHhhcCcE------------------EEEecCCCCCC-HHHHHHHHHHH
Q psy15725 303 QVSTEEGERKAKELNVM------------------FIETSAKAGYN-VKQLFRRVAAA 341 (355)
Q Consensus 303 ~v~~~~~~~~~~~~~~~------------------~~~~SA~~~~g-v~~l~~~l~~~ 341 (355)
.. +.......+.| .+++||..|.| ++++++++.+.
T Consensus 257 --g~--~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 257 --GG--ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp --TH--HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred --HH--HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 11 12222233333 34579999999 99999999876
No 250
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.40 E-value=2.3e-07 Score=76.74 Aligned_cols=76 Identities=18% Similarity=0.330 Sum_probs=61.5
Q ss_pred ceEEEEEEeCCCcccccccccccccC----CcEEEEEEeCC-CcccHHHHHHHHHHHHhh----cCCCceEEEEeeCCCC
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRD----STVAVVVYDIT-NANSFHQTSKWIDDVRTE----RGSDVIIMLVGNKTDL 298 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~----~~~vi~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl 298 (355)
..+.+.+||++|.+.+...+..++.. ++++++|+|++ +..++..+..|+..+... ...++|+++|+||+|+
T Consensus 89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 168 (193)
T 2ged_A 89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 168 (193)
T ss_dssp CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHh
Confidence 34567899999999998888777766 89999999999 888888888888776543 2258999999999999
Q ss_pred CCccc
Q psy15725 299 SDKRQ 303 (355)
Q Consensus 299 ~~~~~ 303 (355)
.+.+.
T Consensus 169 ~~~~~ 173 (193)
T 2ged_A 169 FTARP 173 (193)
T ss_dssp TTCCC
T ss_pred cCCCC
Confidence 75543
No 251
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.36 E-value=3.8e-07 Score=75.44 Aligned_cols=100 Identities=6% Similarity=-0.050 Sum_probs=57.4
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
+.+|++.++.+|..|+.++|++|||+|.+|++.++ ....+.++....
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL-------------------------------- 154 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMT-------------------------------- 154 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHS--------------------------------
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHh--------------------------------
Confidence 45689999999999999999999999999986655 333332222210
Q ss_pred cccccccc-CCCccEEEEEeecC-CCCcccc---eehhhhhhhhhccCeEEEEeeeeeccccce
Q psy15725 171 WIDDVRTE-RGSDVIIMLVGNKT-DLSDKRQ---VSTEEGERKAKELNVMFIETSAKAGYNVKQ 229 (355)
Q Consensus 171 ~~~~~~~~-~~~~~piilv~nK~-D~~~~~~---v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~ 229 (355)
... ...++|++|.+||. |++..-. +......... .....+..|||.+|.+..+
T Consensus 155 -----~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l-~R~W~Iq~csA~TGeGL~E 212 (227)
T 3l82_B 155 -----DPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLN 212 (227)
T ss_dssp -----CTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGG-CSCEEEEEEETTTCTTHHH
T ss_pred -----cchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCC-CCCEEEEEeECCCCcCHHH
Confidence 111 13589999999995 6653321 1111111111 2456789999999887653
No 252
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.36 E-value=4.8e-07 Score=81.16 Aligned_cols=113 Identities=19% Similarity=0.222 Sum_probs=70.5
Q ss_pred EEEEEEeCCCccc-------------ccccccccccCCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCceEEEEeeC
Q psy15725 230 VRLQLWDTAGQER-------------FRSLIPSYIRDSTVAVVVYDITNAN-SFHQTSKWIDDVRTERGSDVIIMLVGNK 295 (355)
Q Consensus 230 i~~~i~D~~g~~~-------------~~~~~~~~~~~~~~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK 295 (355)
..+.++||+|... +...+..++..+|++++|+|.++.. .......+...+.. .+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~---~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP---EGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS---SCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC---CCCcEEEEEcC
Confidence 4678999999643 4445667788999999999974332 21121223333332 58999999999
Q ss_pred CCCCCcccCCHHHHHHHHhhcCc---EEEEecCCC---CCCHHHHHHHHHHHcCCC
Q psy15725 296 TDLSDKRQVSTEEGERKAKELNV---MFIETSAKA---GYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 296 ~Dl~~~~~v~~~~~~~~~~~~~~---~~~~~SA~~---~~gv~~l~~~l~~~i~~~ 345 (355)
+|+..................+. ++..+||.+ +.|++++++.+.+.++..
T Consensus 208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNH 263 (315)
T ss_dssp TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence 99975543222222110011113 444555556 899999999999888653
No 253
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.33 E-value=1.1e-07 Score=87.29 Aligned_cols=108 Identities=21% Similarity=0.214 Sum_probs=74.8
Q ss_pred EEEEEeCCCcccc-------------cccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCC
Q psy15725 231 RLQLWDTAGQERF-------------RSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 297 (355)
Q Consensus 231 ~~~i~D~~g~~~~-------------~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 297 (355)
.+.+||++|...+ ..+...++..+++++++++..+..... ..|+..+......+.|+++|+||+|
T Consensus 137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCCc
Confidence 5789999997665 455677889999999999875443221 2334434333336889999999999
Q ss_pred CCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHH
Q psy15725 298 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA 340 (355)
Q Consensus 298 l~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~ 340 (355)
+..................+.+|+++|+..+.|+++.+..+..
T Consensus 215 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~ 257 (360)
T 3t34_A 215 LMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAA 257 (360)
T ss_dssp GCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHH
T ss_pred cCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHH
Confidence 9765544433333334445678999999999998877655443
No 254
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.26 E-value=6.8e-07 Score=78.84 Aligned_cols=99 Identities=11% Similarity=0.100 Sum_probs=67.6
Q ss_pred CCCcc-cccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhh
Q psy15725 237 TAGQE-RFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE 315 (355)
Q Consensus 237 ~~g~~-~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~ 315 (355)
.||+. .........+..+|+++.|+|++++.+... ..+.... .++|+++|+||+|+.+.... +....+.+.
T Consensus 6 ~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~-----~~l~~~l-~~kp~ilVlNK~DL~~~~~~--~~~~~~~~~ 77 (282)
T 1puj_A 6 FPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN-----PMIEDIL-KNKPRIMLLNKADKADAAVT--QQWKEHFEN 77 (282)
T ss_dssp ---CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC-----HHHHHHC-SSSCEEEEEECGGGSCHHHH--HHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC-----HHHHHHH-CCCCEEEEEECcccCCHHHH--HHHHHHHHh
Confidence 35543 233344556788999999999998877543 1111222 47999999999999753221 112233444
Q ss_pred cCcEEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725 316 LNVMFIETSAKAGYNVKQLFRRVAAALP 343 (355)
Q Consensus 316 ~~~~~~~~SA~~~~gv~~l~~~l~~~i~ 343 (355)
.+++++++||+++.|++++++.+.+.+.
T Consensus 78 ~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 78 QGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp TTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred cCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 5789999999999999999999888765
No 255
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.23 E-value=6.1e-06 Score=76.41 Aligned_cols=25 Identities=24% Similarity=0.593 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDS 37 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~ 37 (355)
.++++++|++|+|||||+|.+.+..
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCcc
Confidence 3679999999999999999999854
No 256
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.22 E-value=1e-06 Score=81.90 Aligned_cols=93 Identities=14% Similarity=0.231 Sum_probs=48.4
Q ss_pred cccccCCcEEEEEEeCCCc-ccHHHHH-HHHHHHHhhcCCCceEEEEeeCCCCCCcccCCH--HHHHHHHhhcCcEEEEe
Q psy15725 248 PSYIRDSTVAVVVYDITNA-NSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST--EEGERKAKELNVMFIET 323 (355)
Q Consensus 248 ~~~~~~~~~vi~v~d~~~~-~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~~~~~~~~~ 323 (355)
+.++.++++.++++..... .++.... .|+..+. .++|+|+|+||+|+.+.+.+.. ..+...+...+++++++
T Consensus 131 Ral~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~ 206 (418)
T 2qag_C 131 RRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEF 206 (418)
T ss_dssp CCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred HHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeC
Confidence 4455555543333433332 3444443 5666664 4799999999999977665544 45566677778999999
Q ss_pred cCCCCCCHHHHHHHHHHHcCC
Q psy15725 324 SAKAGYNVKQLFRRVAAALPG 344 (355)
Q Consensus 324 SA~~~~gv~~l~~~l~~~i~~ 344 (355)
||+++.|++++|..|...+|-
T Consensus 207 sa~~~~~v~~~~~~l~~~iPf 227 (418)
T 2qag_C 207 PETDDEEENKLVKKIKDRLPL 227 (418)
T ss_dssp C-----------------CCE
T ss_pred CCCCCcCHHHHHHHHHhhCCc
Confidence 999999999999999988874
No 257
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.20 E-value=1.5e-06 Score=84.32 Aligned_cols=95 Identities=21% Similarity=0.182 Sum_probs=70.4
Q ss_pred EEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHH
Q psy15725 231 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGE 310 (355)
Q Consensus 231 ~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~ 310 (355)
.+.+|||||++.|..++...+..+|++++|+|++++..-+....|. .+.. .++|+++++||+|+.....
T Consensus 71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~-~l~~---~~vPiIVViNKiDl~~~~~------- 139 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALN-ILRM---YRTPFVVAANKIDRIHGWR------- 139 (594)
T ss_dssp EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH-HHHH---TTCCEEEEEECGGGSTTCC-------
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH-HHHH---cCCeEEEEecccccccccc-------
Confidence 5889999999999999999999999999999999854433332222 2332 5899999999999853211
Q ss_pred HHHhhcCcEEEEecCCCCCCHHHHHHHHH
Q psy15725 311 RKAKELNVMFIETSAKAGYNVKQLFRRVA 339 (355)
Q Consensus 311 ~~~~~~~~~~~~~SA~~~~gv~~l~~~l~ 339 (355)
...+.+++++|++++.++.+.|..++
T Consensus 140 ---~~~~~~~~e~sa~~~~~v~~~~~e~i 165 (594)
T 1g7s_A 140 ---VHEGRPFMETFSKQDIQVQQKLDTKV 165 (594)
T ss_dssp ---CCTTCCHHHHHTTSCHHHHHHHHHHH
T ss_pred ---cccCCchHHHHHHhHHHHHHHHHHHH
Confidence 01245677888888888877766544
No 258
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.20 E-value=1.5e-06 Score=83.46 Aligned_cols=109 Identities=19% Similarity=0.173 Sum_probs=75.5
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE 307 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~ 307 (355)
....+.++||+|+..|...+..++..+|++++|+|+++....+. ..+...+.. .++|+++++||+|+...+. .+
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~---~~ipiivviNK~Dl~~~~~--~~ 153 (529)
T 2h5e_A 80 HDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL---RDTPILTFMNKLDRDIRDP--ME 153 (529)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT---TTCCEEEEEECTTSCCSCH--HH
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH---cCCCEEEEEcCcCCccccH--HH
Confidence 35678999999999998888888999999999999988754332 222222222 5899999999999864432 22
Q ss_pred HHHHHHhhcCcE-----EEEecCCCCCCHHHHHHHHHHHc
Q psy15725 308 EGERKAKELNVM-----FIETSAKAGYNVKQLFRRVAAAL 342 (355)
Q Consensus 308 ~~~~~~~~~~~~-----~~~~SA~~~~gv~~l~~~l~~~i 342 (355)
...++.+.++.+ +..+||+++.|+.+++...+...
T Consensus 154 ~~~~i~~~l~~~~~~~~~pi~sa~~~~Gv~dl~~~~~~~~ 193 (529)
T 2h5e_A 154 LLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLY 193 (529)
T ss_dssp HHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEEC
T ss_pred HHHHHHHHhCCCccceecceecccCcceeeehhhhhHhhh
Confidence 233344444432 33479999999888876654443
No 259
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.12 E-value=1.2e-05 Score=70.28 Aligned_cols=25 Identities=20% Similarity=0.636 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYDS 37 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~~ 37 (355)
.++++++|++|+|||||+|.+.+..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999999999999854
No 260
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.12 E-value=9.3e-06 Score=75.54 Aligned_cols=93 Identities=16% Similarity=0.103 Sum_probs=53.7
Q ss_pred EEEEEEeCCCcccccc-----ccc-ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCccc
Q psy15725 230 VRLQLWDTAGQERFRS-----LIP-SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ 303 (355)
Q Consensus 230 i~~~i~D~~g~~~~~~-----~~~-~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 303 (355)
+-+.|+||+|...... +.. ......+.+++|+|.+..... ......+.+ .-.+..+|+||.|....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~---~~~i~gVIlTKlD~~~~-- 254 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKE---ATPIGSIIVTKLDGSAK-- 254 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHH---SCTTEEEEEECCSSCSS--
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHh---hCCCeEEEEECCCCccc--
Confidence 3455788888432111 100 112356889999998765332 223333333 22456799999997422
Q ss_pred CCHHHHHHHHhhcCcEEEEecCCCCCCHHHH
Q psy15725 304 VSTEEGERKAKELNVMFIETSAKAGYNVKQL 334 (355)
Q Consensus 304 v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l 334 (355)
...+.......+.|+.+++. |++++++
T Consensus 255 --gG~~ls~~~~~g~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 255 --GGGALSAVAATGAPIKFIGT--GEKIDDI 281 (443)
T ss_dssp --HHHHHHHHHTTCCCEEEEEC--SSSTTCE
T ss_pred --ccHHHHHHHHHCCCEEEEEc--CCChHHh
Confidence 23344555567889988885 7766544
No 261
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.12 E-value=1.6e-07 Score=85.89 Aligned_cols=108 Identities=18% Similarity=0.146 Sum_probs=66.1
Q ss_pred EEEEEEeCCCcc-------------cccccccccccCCcEEEE-EEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeC
Q psy15725 230 VRLQLWDTAGQE-------------RFRSLIPSYIRDSTVAVV-VYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNK 295 (355)
Q Consensus 230 i~~~i~D~~g~~-------------~~~~~~~~~~~~~~~vi~-v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK 295 (355)
..+.++||||.. .+..+...++...+.+++ +.+.+....-.+...+.+.+. ..+.|+++|+||
T Consensus 130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~---~~~~~~i~V~NK 206 (353)
T 2x2e_A 130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVD---PQGQRTIGVITK 206 (353)
T ss_dssp CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHC---TTCTTEEEEEEC
T ss_pred CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhC---cCCCceEEEecc
Confidence 467899999953 334455566655555544 556554333222222333333 268999999999
Q ss_pred CCCCCcccCCHHHHHH--HHhhcCc-EEEEecCCCCCCHHHHHHHHHH
Q psy15725 296 TDLSDKRQVSTEEGER--KAKELNV-MFIETSAKAGYNVKQLFRRVAA 340 (355)
Q Consensus 296 ~Dl~~~~~v~~~~~~~--~~~~~~~-~~~~~SA~~~~gv~~l~~~l~~ 340 (355)
+|+.+........... +....++ +++++||+++.|++++++++.+
T Consensus 207 ~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 207 LDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp GGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred ccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 9997543321111110 0111343 7899999999999999999987
No 262
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.08 E-value=6.3e-07 Score=82.92 Aligned_cols=53 Identities=21% Similarity=0.307 Sum_probs=36.4
Q ss_pred CceEEEEeeCCCCCCcccCCHHHHHHHH---hhcCcEEEEecCCCCCCHHHHHH-HHHHHcC
Q psy15725 286 DVIIMLVGNKTDLSDKRQVSTEEGERKA---KELNVMFIETSAKAGYNVKQLFR-RVAAALP 343 (355)
Q Consensus 286 ~~piilv~nK~Dl~~~~~v~~~~~~~~~---~~~~~~~~~~SA~~~~gv~~l~~-~l~~~i~ 343 (355)
.+|+++|+||+|+. . ......+. ...+.+++++||+.+.|+.++++ .|.++++
T Consensus 214 ~kP~i~v~NK~D~~-~----~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~~~l~~~~p 270 (397)
T 1wxq_A 214 NKPMVIAANKADAA-S----DEQIKRLVREEEKRGYIVIPTSAAAELTLRKAAKAGFIEYIP 270 (397)
T ss_dssp HSCEEEEEECGGGS-C----HHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSSSCCCCSCC
T ss_pred CCCEEEEEeCcccc-c----hHHHHHHHHHHhhcCCcEEEEeccchhhHHHHHhhhhhhhcC
Confidence 49999999999975 2 12222222 22367999999999999988766 4444444
No 263
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.07 E-value=1.7e-06 Score=75.40 Aligned_cols=25 Identities=16% Similarity=0.396 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSF 38 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~ 38 (355)
++++++|.+|||||||+|++.+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5999999999999999999998543
No 264
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.04 E-value=4e-06 Score=73.85 Aligned_cols=26 Identities=31% Similarity=0.603 Sum_probs=23.4
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDS 37 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~ 37 (355)
..++|+++|.+|||||||+|++++..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 45899999999999999999999854
No 265
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.02 E-value=1.8e-06 Score=74.93 Aligned_cols=99 Identities=6% Similarity=-0.058 Sum_probs=60.9
Q ss_pred ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725 91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK 170 (355)
Q Consensus 91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (355)
|.+||+..+.+|..|+.++|++|||+|.+|++.++ ....+.++...
T Consensus 193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~m--------------------------------- 238 (312)
T 3l2o_B 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAM--------------------------------- 238 (312)
T ss_dssp ----CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHH---------------------------------
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHH---------------------------------
Confidence 35789999999999999999999999999987765 22222221110
Q ss_pred cccccccc-CCCccEEEEEeec-CCCCcccc---eehhhhhhhhhccCeEEEEeeeeeccccc
Q psy15725 171 WIDDVRTE-RGSDVIIMLVGNK-TDLSDKRQ---VSTEEGERKAKELNVMFIETSAKAGYNVK 228 (355)
Q Consensus 171 ~~~~~~~~-~~~~~piilv~nK-~D~~~~~~---v~~~~~~~~~~~~~~~~~~~sa~~~~~v~ 228 (355)
+... ...++|++|.+|| .|++..-. +......... .....+..+||.+|.+..
T Consensus 239 ----L~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l-~r~W~Iq~csA~tGeGL~ 296 (312)
T 3l2o_B 239 ----TDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFL 296 (312)
T ss_dssp ----HCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGG-CSCEEEEEEETTTCTTHH
T ss_pred ----hcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccC-CCcEEEEecccCCCcCHH
Confidence 0001 1248999999997 57754321 1111111111 245678999999988765
No 266
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.99 E-value=1.8e-05 Score=75.85 Aligned_cols=88 Identities=19% Similarity=0.130 Sum_probs=64.7
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE 307 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~ 307 (355)
....+.+|||+|+..|...+..++..+|++++|+|+++..+.+....|. .+.. .++|+++++||+|+...+. ..
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~---~~iPiivviNK~Dl~~~~~--~~ 153 (528)
T 3tr5_A 80 KDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL---RHTPIMTFINKMDRDTRPS--IE 153 (528)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT---TTCCEEEEEECTTSCCSCH--HH
T ss_pred CCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEEeCCCCccccH--HH
Confidence 3577899999999999999999999999999999999988776654443 3333 5799999999999854321 22
Q ss_pred HHHHHHhhcCcEEE
Q psy15725 308 EGERKAKELNVMFI 321 (355)
Q Consensus 308 ~~~~~~~~~~~~~~ 321 (355)
...++.+..+..+.
T Consensus 154 ~l~ei~~~l~~~~~ 167 (528)
T 3tr5_A 154 LLDEIESILRIHCA 167 (528)
T ss_dssp HHHHHHHHHCCEEE
T ss_pred HHHHHHHhhCCCce
Confidence 33344445554433
No 267
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.97 E-value=2.6e-06 Score=77.29 Aligned_cols=104 Identities=13% Similarity=0.100 Sum_probs=63.7
Q ss_pred eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH-
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE- 307 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~- 307 (355)
.+.+.++||+|....... ....+|.+++|+|.+.....+.+.. .. .++|+++|+||+|+.+.......
T Consensus 148 ~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~ 216 (341)
T 2p67_A 148 GYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIAR 216 (341)
T ss_dssp TCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHH
Confidence 345678999995433322 3578999999999875533211110 11 24689999999998643221110
Q ss_pred -HHHHHHhh-------cCcEEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725 308 -EGERKAKE-------LNVMFIETSAKAGYNVKQLFRRVAAALP 343 (355)
Q Consensus 308 -~~~~~~~~-------~~~~~~~~SA~~~~gv~~l~~~l~~~i~ 343 (355)
+....... +..+++++||++|.|+++++++|.+.++
T Consensus 217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 11111111 1358999999999999999999998765
No 268
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.95 E-value=3.7e-06 Score=74.72 Aligned_cols=90 Identities=17% Similarity=0.209 Sum_probs=62.1
Q ss_pred cccccccCCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccC--CHHHHHHHHhhcCcEEEE
Q psy15725 246 LIPSYIRDSTVAVVVYDITNAN-SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV--STEEGERKAKELNVMFIE 322 (355)
Q Consensus 246 ~~~~~~~~~~~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~~~~~ 322 (355)
+.+..++++|.+++|+|+..+. +...+..++..... .++|.++|+||+|+.++... .........+..|.+++.
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~ 155 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYL 155 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEE
Confidence 4445789999999999998665 33334444444433 68999999999999754320 011223333445789999
Q ss_pred ecCCCCCCHHHHHHHH
Q psy15725 323 TSAKAGYNVKQLFRRV 338 (355)
Q Consensus 323 ~SA~~~~gv~~l~~~l 338 (355)
+||+++.|++++++.+
T Consensus 156 ~sa~~~~g~~~L~~~~ 171 (307)
T 1t9h_A 156 TSSKDQDSLADIIPHF 171 (307)
T ss_dssp CCHHHHTTCTTTGGGG
T ss_pred EecCCCCCHHHHHhhc
Confidence 9999999998877643
No 269
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.90 E-value=3.5e-06 Score=83.41 Aligned_cols=107 Identities=18% Similarity=0.179 Sum_probs=70.7
Q ss_pred EEEEEeCCCccc-------------ccccccccc-cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCC
Q psy15725 231 RLQLWDTAGQER-------------FRSLIPSYI-RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 296 (355)
Q Consensus 231 ~~~i~D~~g~~~-------------~~~~~~~~~-~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~ 296 (355)
.+.++||||-.. +..+...++ ..+|++++|+|.+.....++.......+.. .+.|+++|+||+
T Consensus 151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~---~g~pvIlVlNKi 227 (772)
T 3zvr_A 151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP---QGQRTIGVITKL 227 (772)
T ss_dssp SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCT---TCSSEEEEEECT
T ss_pred ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHh---cCCCEEEEEeCc
Confidence 577899999432 222333333 578999999999876554443334444443 589999999999
Q ss_pred CCCCcccCCHHHHHH-H-HhhcC-cEEEEecCCCCCCHHHHHHHHHH
Q psy15725 297 DLSDKRQVSTEEGER-K-AKELN-VMFIETSAKAGYNVKQLFRRVAA 340 (355)
Q Consensus 297 Dl~~~~~v~~~~~~~-~-~~~~~-~~~~~~SA~~~~gv~~l~~~l~~ 340 (355)
|+.+........... . ....+ .+++++||++|.|+++++++|.+
T Consensus 228 Dlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 228 DLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp TSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred ccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 997554432221110 0 00124 37899999999999999999987
No 270
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.84 E-value=1.2e-05 Score=81.37 Aligned_cols=68 Identities=21% Similarity=0.251 Sum_probs=58.4
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCC
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS 299 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 299 (355)
..+.+.+|||+|+..|...+..++..+|++++|+|+++..+.+....|.... . .++|+++++||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H---cCCCeEEEEECCCcc
Confidence 3678899999999999999999999999999999999998888765555433 2 579999999999985
No 271
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.84 E-value=3.6e-05 Score=67.04 Aligned_cols=76 Identities=12% Similarity=0.077 Sum_probs=52.6
Q ss_pred ceEEEEEEeCCCccccccccccccc---------CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCC--ceEEEEeeCC
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIR---------DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD--VIIMLVGNKT 296 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~---------~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~ 296 (355)
+...+.+|||+|...+......++. .++++++|++++..........|+..+......+ .|+++|+||+
T Consensus 82 ~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~ 161 (262)
T 3def_A 82 GGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHA 161 (262)
T ss_dssp TTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECT
T ss_pred CCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCc
Confidence 4458899999998877655444433 7899999998876552222346677766544333 4999999999
Q ss_pred CCCCccc
Q psy15725 297 DLSDKRQ 303 (355)
Q Consensus 297 Dl~~~~~ 303 (355)
|+..++.
T Consensus 162 Dl~~~~~ 168 (262)
T 3def_A 162 QFSPPDE 168 (262)
T ss_dssp TCCCSTT
T ss_pred ccCCCCC
Confidence 9864433
No 272
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.81 E-value=3.5e-06 Score=83.54 Aligned_cols=69 Identities=23% Similarity=0.243 Sum_probs=57.5
Q ss_pred eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCc
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 301 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 301 (355)
...+.+|||+|+..|...+..++..+|++++|+|+++..+.+....|.. +.. .++|+++++||+|+...
T Consensus 74 ~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 74 GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTTC
T ss_pred CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCcccc
Confidence 5778999999999998888888999999999999999888776655543 333 48999999999998643
No 273
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.77 E-value=1.1e-05 Score=70.13 Aligned_cols=84 Identities=17% Similarity=0.049 Sum_probs=59.7
Q ss_pred ccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCC
Q psy15725 247 IPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 326 (355)
Q Consensus 247 ~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~ 326 (355)
....++.+|+++.|+|++++.+.... .+. .. ++|.++|+||+|+.++... +....+.+..+.++ ++||+
T Consensus 15 ~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-ll--~k~~iivlNK~DL~~~~~~--~~~~~~~~~~g~~v-~iSa~ 83 (262)
T 3cnl_A 15 IKDLLRLVNTVVEVRDARAPFATSAY-----GVD-FS--RKETIILLNKVDIADEKTT--KKWVEFFKKQGKRV-ITTHK 83 (262)
T ss_dssp HHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-CT--TSEEEEEEECGGGSCHHHH--HHHHHHHHHTTCCE-EECCT
T ss_pred HHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-hc--CCCcEEEEECccCCCHHHH--HHHHHHHHHcCCeE-EEECC
Confidence 34567889999999999988765431 011 11 7999999999999754221 12223444567788 99999
Q ss_pred CCCCHHHHHHHHHHH
Q psy15725 327 AGYNVKQLFRRVAAA 341 (355)
Q Consensus 327 ~~~gv~~l~~~l~~~ 341 (355)
++.|+++++++|...
T Consensus 84 ~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 84 GEPRKVLLKKLSFDR 98 (262)
T ss_dssp TSCHHHHHHHHCCCT
T ss_pred CCcCHHHHHHHHHHh
Confidence 999999999887654
No 274
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.75 E-value=6.5e-05 Score=68.03 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=57.6
Q ss_pred cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCC-HHHHHHHHhhcCcEEEEecCCCC
Q psy15725 250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVS-TEEGERKAKELNVMFIETSAKAG 328 (355)
Q Consensus 250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~-~~~~~~~~~~~~~~~~~~SA~~~ 328 (355)
..+++|.+++|++.....+...+..++-.... .++|.++|+||+||.++.... .+.........|.+++++||+++
T Consensus 127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~ 203 (358)
T 2rcn_A 127 IAANIDQIVIVSAILPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ 203 (358)
T ss_dssp EEECCCEEEEEEESTTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 46789999988765433344445555544444 478999999999997543210 11122333456789999999999
Q ss_pred CCHHHHHHHH
Q psy15725 329 YNVKQLFRRV 338 (355)
Q Consensus 329 ~gv~~l~~~l 338 (355)
.|++++...+
T Consensus 204 ~gl~~L~~~~ 213 (358)
T 2rcn_A 204 DGLKPLEEAL 213 (358)
T ss_dssp BTHHHHHHHH
T ss_pred cCHHHHHHhc
Confidence 9999988764
No 275
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.74 E-value=3.9e-05 Score=74.05 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=24.1
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDS 37 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~ 37 (355)
.+.++|+|+|.+|||||||+|+|++..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 456889999999999999999999854
No 276
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.71 E-value=8e-05 Score=69.23 Aligned_cols=68 Identities=9% Similarity=0.014 Sum_probs=43.1
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHH
Q psy15725 253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 332 (355)
Q Consensus 253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~ 332 (355)
..+.+++|+|....... ......+.+. -.+..+|.||.|... ....+.......+.|+.+++. |++++
T Consensus 211 ~pd~vlLVlDa~~gq~a---~~~a~~f~~~---~~~~gVIlTKlD~~a----~~G~als~~~~~g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 211 KPDDVILVIDASIGQKA---YDLASRFHQA---SPIGSVIITKMDGTA----KGGGALSAVVATGATIKFIGT--GEKID 278 (433)
T ss_dssp CCSEEEEEEEGGGGGGG---HHHHHHHHHH---CSSEEEEEECGGGCS----CHHHHHHHHHHHTCEEEEEEC--CSSSS
T ss_pred CCcceEEEEeCccchHH---HHHHHHHhcc---cCCcEEEEecccccc----cchHHHHHHHHHCCCEEEEEC--CCChH
Confidence 45789999998765332 2233334332 245789999999642 233445555667899988886 66653
No 277
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.66 E-value=4.4e-05 Score=64.43 Aligned_cols=54 Identities=80% Similarity=1.250 Sum_probs=48.8
Q ss_pred ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 279 (355)
Q Consensus 226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i 279 (355)
+...+.+.||||+|++.|+.+++.++.+++++++|||+++..+++.+..|+..+
T Consensus 58 ~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i 111 (216)
T 4dkx_A 58 EDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDV 111 (216)
T ss_dssp SSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred cceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHH
Confidence 445788999999999999999999999999999999999999999988887554
No 278
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.66 E-value=0.00015 Score=63.39 Aligned_cols=76 Identities=11% Similarity=0.038 Sum_probs=51.4
Q ss_pred ceEEEEEEeCCCccccccccc---------ccccCCcEEEEEEeCCCcccHHH-HHHHHHHHHhhcCCC--ceEEEEeeC
Q psy15725 228 KQVRLQLWDTAGQERFRSLIP---------SYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD--VIIMLVGNK 295 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~---------~~~~~~~~vi~v~d~~~~~s~~~-~~~~~~~i~~~~~~~--~piilv~nK 295 (355)
....+.+|||+|...+..... .....+|++++|+|++... +.. ...|+..+......+ .|+++|+||
T Consensus 85 ~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~iivV~nK 163 (270)
T 1h65_A 85 AGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKGIWNKAIVALTH 163 (270)
T ss_dssp TTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred CCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcccccCEEEEEEC
Confidence 356789999999876553322 1234789999999987643 333 236777776543223 799999999
Q ss_pred CCCCCcccC
Q psy15725 296 TDLSDKRQV 304 (355)
Q Consensus 296 ~Dl~~~~~v 304 (355)
+|+..++..
T Consensus 164 ~Dl~~~~~~ 172 (270)
T 1h65_A 164 AQFSPPDGL 172 (270)
T ss_dssp CSCCCGGGC
T ss_pred cccCCcCCC
Confidence 999765543
No 279
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.64 E-value=0.0001 Score=73.01 Aligned_cols=69 Identities=22% Similarity=0.308 Sum_probs=58.1
Q ss_pred eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCc
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 301 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 301 (355)
...+.+|||+|+..|...+..++..+|++++|+|+++..+.+....|.. +.. .++|+++++||+|+...
T Consensus 76 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTTC
T ss_pred CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCcccC
Confidence 5788999999999998888899999999999999999888777655553 333 48999999999998643
No 280
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.63 E-value=0.00016 Score=64.00 Aligned_cols=92 Identities=12% Similarity=0.091 Sum_probs=55.0
Q ss_pred EEEEEEeCCCccc--ccc-ccc-----ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCce-EEEEeeCCCCCC
Q psy15725 230 VRLQLWDTAGQER--FRS-LIP-----SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSD 300 (355)
Q Consensus 230 i~~~i~D~~g~~~--~~~-~~~-----~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 300 (355)
+-+.++||+|... ... +.. .....++.+++|+|.... .+.......+.. ..| ..+|.||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence 3456889988655 211 111 123468899999997643 222222333332 356 778999999642
Q ss_pred cccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHH
Q psy15725 301 KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 334 (355)
Q Consensus 301 ~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l 334 (355)
............+.|+.+++ .|++++++
T Consensus 254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 254 ----KGGGALSAVAATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp ----THHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred ----chHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence 23344556667788888876 67777654
No 281
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.53 E-value=0.0002 Score=58.99 Aligned_cols=115 Identities=17% Similarity=0.320 Sum_probs=88.8
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcccCCH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVST 306 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~ 306 (355)
..+.+.+||++|.+.+...+..++..+|++++|+|++++.+++.+..|+..+.... ..++|+++|+||+|+.+.. ..
T Consensus 71 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~ 148 (192)
T 2b6h_A 71 KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PV 148 (192)
T ss_dssp TTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CH
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CH
Confidence 45788999999999999999999999999999999999999999988888876532 2589999999999996432 22
Q ss_pred HHHHH-H----HhhcCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725 307 EEGER-K----AKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344 (355)
Q Consensus 307 ~~~~~-~----~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~ 344 (355)
.+... + +...++++++|||++|.||+++|++|.+.+.+
T Consensus 149 ~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 149 SELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK 191 (192)
T ss_dssp HHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTTT
T ss_pred HHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHhc
Confidence 22211 1 22345789999999999999999999998864
No 282
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.50 E-value=0.00019 Score=71.19 Aligned_cols=69 Identities=22% Similarity=0.234 Sum_probs=56.1
Q ss_pred eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCc
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 301 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 301 (355)
.+.+.+|||+|+..|...+..++..+|++++|+|+++....+....|.. +.. .++|+++++||+|+...
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~---~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 81 PHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK---YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred ceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH---cCCCEEEEEeCCCcccc
Confidence 4788999999999998888889999999999999998876655444432 222 58999999999998643
No 283
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.48 E-value=5.3e-05 Score=70.67 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhc
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYD 36 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~ 36 (355)
...|+++|.+||||||++++|...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998873
No 284
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.47 E-value=0.00049 Score=63.64 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDS 37 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~ 37 (355)
..++++|++|+|||||+|.+.+..
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 479999999999999999999843
No 285
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.47 E-value=6.2e-05 Score=68.57 Aligned_cols=96 Identities=14% Similarity=0.075 Sum_probs=60.8
Q ss_pred EEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccC
Q psy15725 84 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHAN 163 (355)
Q Consensus 84 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (355)
...+.+|||||... .....+..+|++++|+|....+.++.+..+
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~--------------------------------- 214 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG--------------------------------- 214 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT---------------------------------
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh---------------------------------
Confidence 45789999999432 222345889999999998775544332211
Q ss_pred ccccCccccccccccCCCccEEEEEeecCCCCcccceeh--hhhhhhhh-------ccCeEEEEeeeeeccccceEE
Q psy15725 164 SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST--EEGERKAK-------ELNVMFIETSAKAGYNVKQVR 231 (355)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~--~~~~~~~~-------~~~~~~~~~sa~~~~~v~~i~ 231 (355)
..+.|+++|+||+|+.+...... .+...... ..+.+++.+|+.++.+++.++
T Consensus 215 ----------------~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~ 275 (355)
T 3p32_A 215 ----------------VLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELW 275 (355)
T ss_dssp ----------------SGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHH
T ss_pred ----------------HhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHH
Confidence 12568999999999864322111 11111111 225689999999999887653
No 286
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.41 E-value=1.8e-05 Score=74.96 Aligned_cols=100 Identities=13% Similarity=0.084 Sum_probs=58.3
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
..++|+++|.+|+||||+.++|........ .++..++.........+......+||
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~------------------------~~t~~~~~d~~r~~~~g~~~~~~ifd 93 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIG------------------------VPTREFNVGQYRRDMVKTYKSFEFFL 93 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT------------------------CCEEEEEHHHHHHHHHCSCCCGGGGC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccC------------------------CCceEEecchhhhhhccCCCcccccC
Confidence 457899999999999999999876321000 01111110000000111112345788
Q ss_pred cCCccc--ccccc--------cccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725 92 TAGQER--FRSLI--------PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT 136 (355)
Q Consensus 92 ~~g~~~--~~~~~--------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~ 136 (355)
..|.+. +...+ ..++....+.++|+|.++. +++....|++.++.
T Consensus 94 ~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~ 147 (469)
T 1bif_A 94 PDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQ 147 (469)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence 888732 22222 4455567888999999997 56666777776654
No 287
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.37 E-value=0.00013 Score=66.70 Aligned_cols=110 Identities=11% Similarity=0.030 Sum_probs=81.5
Q ss_pred eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceE-EEEee-CCCCCCcccCCH
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII-MLVGN-KTDLSDKRQVST 306 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~n-K~Dl~~~~~v~~ 306 (355)
...+.+|||||++.|.......+..+|++++|+| +.... ....++...+.. .++|. +++.| |+|+ +.+.+..
T Consensus 59 ~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~-~qt~e~~~~~~~---~~i~~~ivvvNNK~Dl-~~~~~~~ 132 (370)
T 2elf_A 59 GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLD-AHTGECIIALDL---LGFKHGIIALTRSDST-HMHAIDE 132 (370)
T ss_dssp SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCC-HHHHHHHHHHHH---TTCCEEEEEECCGGGS-CHHHHHH
T ss_pred CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCc-HHHHHHHHHHHH---cCCCeEEEEEEeccCC-CHHHHHH
Confidence 4568999999999998777778899999999999 54433 333445544444 46787 99999 9998 5433221
Q ss_pred --HHHHHHHhhc---CcEEEE--ecCCC---CCCHHHHHHHHHHHcCC
Q psy15725 307 --EEGERKAKEL---NVMFIE--TSAKA---GYNVKQLFRRVAAALPG 344 (355)
Q Consensus 307 --~~~~~~~~~~---~~~~~~--~SA~~---~~gv~~l~~~l~~~i~~ 344 (355)
++...+.+.. .+++++ +||++ +.|++++++.|.+.++.
T Consensus 133 ~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 133 LKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp HHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 3344444443 369999 99999 99999999999988764
No 288
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.36 E-value=0.00029 Score=65.71 Aligned_cols=26 Identities=15% Similarity=0.126 Sum_probs=23.1
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhc
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYD 36 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~ 36 (355)
.+-.-|+|+|++++|||+|+|+|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 45677999999999999999999974
No 289
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.36 E-value=0.00045 Score=57.90 Aligned_cols=74 Identities=27% Similarity=0.554 Sum_probs=65.8
Q ss_pred ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHH-HHHHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSDVIIMLVGNKTDLSD 300 (355)
Q Consensus 226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 300 (355)
+...+.+.+||++|++.+..++..++..++++++|||+++..+++. +..|+..+.... .++|+++|+||+|+.+
T Consensus 71 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 71 EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRT 145 (214)
T ss_dssp --CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGG
T ss_pred CCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcc
Confidence 3456788999999999999999999999999999999999999998 688999988765 6899999999999853
No 290
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.34 E-value=0.00021 Score=57.59 Aligned_cols=54 Identities=35% Similarity=0.610 Sum_probs=49.6
Q ss_pred eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhh
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE 282 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~ 282 (355)
.+.+.+||++|++.+..++..++..++++++|+|++++.+++.+..|+..+...
T Consensus 55 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 108 (178)
T 2hxs_A 55 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKV 108 (178)
T ss_dssp EEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred EEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999888898888764
No 291
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.29 E-value=0.00083 Score=54.27 Aligned_cols=53 Identities=28% Similarity=0.392 Sum_probs=46.2
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 279 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i 279 (355)
...+.+.+||++|.+.+..++..++..++++++|||+++..+++.+..|+..+
T Consensus 51 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~ 103 (181)
T 3t5g_A 51 GQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKL 103 (181)
T ss_dssp TEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999988877776543
No 292
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.28 E-value=0.00045 Score=57.14 Aligned_cols=112 Identities=18% Similarity=0.228 Sum_probs=91.5
Q ss_pred eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcccCCHH
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTE 307 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~ 307 (355)
.+.+.+||++|++.++.++..++..++++++|+|++++.+++.+..|+..+.... ..++|+++|+||+|+.. .+..+
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~ 145 (198)
T 1f6b_A 68 GMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEE 145 (198)
T ss_dssp TEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHH
T ss_pred CEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHH
Confidence 4778999999999999999999999999999999999999999999998886542 26899999999999964 45566
Q ss_pred HHHHHHhh-----------------cCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725 308 EGERKAKE-----------------LNVMFIETSAKAGYNVKQLFRRVAAAL 342 (355)
Q Consensus 308 ~~~~~~~~-----------------~~~~~~~~SA~~~~gv~~l~~~l~~~i 342 (355)
+....... .++++++|||++|.||+++|++|.+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 146 RLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp HHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred HHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 66555432 346899999999999999999998765
No 293
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.26 E-value=0.00021 Score=58.68 Aligned_cols=48 Identities=27% Similarity=0.261 Sum_probs=40.8
Q ss_pred CccEEEEEeecCCCCcccceehhhhhhhhhccCe-EEEEeeeeeccccceE
Q psy15725 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQV 230 (355)
Q Consensus 181 ~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~-~~~~~sa~~~~~v~~i 230 (355)
.++|+++|+||+|+.+. +..++..+++...+. +++++|+.++.+++++
T Consensus 134 ~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 182 (198)
T 3t1o_A 134 DDVPIVIQVNKRDLPDA--LPVEMVRAVVDPEGKFPVLEAVATEGKGVFET 182 (198)
T ss_dssp TSSCEEEEEECTTSTTC--CCHHHHHHHHCTTCCSCEEECBGGGTBTHHHH
T ss_pred CCCCEEEEEEchhcccc--cCHHHHHHHHHhcCCceEEEEecCCCcCHHHH
Confidence 48999999999999653 666778888888888 9999999999887754
No 294
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.25 E-value=0.00097 Score=53.65 Aligned_cols=52 Identities=46% Similarity=0.980 Sum_probs=44.9
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 279 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i 279 (355)
..+.+.+||++|.+.+...+..++..+|++++|+|++++.+++.+..|+..+
T Consensus 56 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 107 (181)
T 3tw8_B 56 EKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI 107 (181)
T ss_dssp EEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred EEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999988887766665443
No 295
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.23 E-value=0.0008 Score=54.69 Aligned_cols=74 Identities=26% Similarity=0.594 Sum_probs=65.3
Q ss_pred ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSD 300 (355)
Q Consensus 226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~ 300 (355)
+...+.+.+||++|++.+..++..++..++++++|||++++.+++.+ ..|+..+.... .++|+++|+||+|+.+
T Consensus 51 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 51 DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRT 125 (184)
T ss_dssp SSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGG
T ss_pred CCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhc
Confidence 34567889999999999999999999999999999999999999988 67888887654 5899999999999853
No 296
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.23 E-value=0.00076 Score=55.28 Aligned_cols=112 Identities=19% Similarity=0.237 Sum_probs=94.4
Q ss_pred eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcccCCHH
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTE 307 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~ 307 (355)
.+.+.+||++|++.++.++..++..++++++|+|++++.+++.+..|+..+.... ..++|+++|+||+|+.. .+..+
T Consensus 66 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~ 143 (190)
T 1m2o_B 66 NIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEA 143 (190)
T ss_dssp TEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHH
T ss_pred CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHH
Confidence 4778999999999999999999999999999999999999999999988876542 26899999999999964 45555
Q ss_pred HHHHHHhh------------cCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725 308 EGERKAKE------------LNVMFIETSAKAGYNVKQLFRRVAAAL 342 (355)
Q Consensus 308 ~~~~~~~~------------~~~~~~~~SA~~~~gv~~l~~~l~~~i 342 (355)
+....... .++++++|||++|.||+++|++|.+.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 144 ELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190 (190)
T ss_dssp HHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred HHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhhC
Confidence 55554432 357899999999999999999998754
No 297
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.21 E-value=0.00031 Score=55.73 Aligned_cols=116 Identities=19% Similarity=0.328 Sum_probs=92.3
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcccCCH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVST 306 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~ 306 (355)
..+.+.+||++|++.+..++..++..+|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ..
T Consensus 42 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~ 119 (164)
T 1r8s_A 42 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NA 119 (164)
T ss_dssp SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CH
T ss_pred CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CH
Confidence 34678999999999999999999999999999999999999999888888876532 2589999999999996432 22
Q ss_pred HHHHH-H----HhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 307 EEGER-K----AKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 307 ~~~~~-~----~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
.+... + ++..++++++|||++|.||+++|++|.+.+.++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 163 (164)
T 1r8s_A 120 AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163 (164)
T ss_dssp HHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC---
T ss_pred HHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhhc
Confidence 22211 1 223457899999999999999999999998754
No 298
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.21 E-value=0.00057 Score=56.15 Aligned_cols=125 Identities=14% Similarity=0.222 Sum_probs=97.8
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC--------CCceEEEEeeCCCC
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG--------SDVIIMLVGNKTDL 298 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~--------~~~piilv~nK~Dl 298 (355)
...+.+.+||++|++.+..++..++..+|++++|||+++..+++.+..|+..+..... .++|+++|+||+|+
T Consensus 60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 139 (199)
T 4bas_A 60 KGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDA 139 (199)
T ss_dssp ETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTS
T ss_pred eCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCC
Confidence 3467889999999999999999999999999999999999999999889888765421 28999999999999
Q ss_pred CCccc---CCHHHHHHH-HhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCCCCCCC
Q psy15725 299 SDKRQ---VSTEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTENK 351 (355)
Q Consensus 299 ~~~~~---v~~~~~~~~-~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~~~~ 351 (355)
.+... +........ ++..++++++|||++|.||+++|++|.+.+.....+..+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~~ 196 (199)
T 4bas_A 140 AGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQSGKAGT 196 (199)
T ss_dssp TTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC-----
T ss_pred CCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHhcccCC
Confidence 75422 211111111 145678999999999999999999999999876655443
No 299
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.21 E-value=0.00075 Score=53.84 Aligned_cols=116 Identities=17% Similarity=0.303 Sum_probs=94.1
Q ss_pred eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCccc---C
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQ---V 304 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~---v 304 (355)
...+.+||++|.+.+...+..++..+|++++|+|++++.++..+..|+..+.... ..++|+++|+||+|+.+... +
T Consensus 50 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 129 (171)
T 1upt_A 50 NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEM 129 (171)
T ss_dssp TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHH
T ss_pred CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHH
Confidence 5778999999999999999999999999999999999999999888888776543 26899999999999965422 1
Q ss_pred CHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725 305 STEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344 (355)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~ 344 (355)
........++..+++++++||++|.||+++|++|.+.+.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 130 ANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp HHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 1111111233456799999999999999999999998864
No 300
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.18 E-value=0.00086 Score=54.97 Aligned_cols=122 Identities=28% Similarity=0.515 Sum_probs=107.0
Q ss_pred ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCceEEEEeeCCCCCCc--c
Q psy15725 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDK--R 302 (355)
Q Consensus 226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~--~ 302 (355)
+...+.+.+||++|++.+..++..++..++++++|||++++.+++.+ ..|+..+.... .++|+++|+||+|+.+. +
T Consensus 67 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~ 145 (194)
T 3reg_A 67 KNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSD 145 (194)
T ss_dssp TTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTT
T ss_pred CCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCC
Confidence 33567789999999999999999999999999999999999999997 67888887654 68999999999999753 6
Q ss_pred cCCHHHHHHHHhhcCcE-EEEecCCCCCCHHHHHHHHHHHcCCCCCC
Q psy15725 303 QVSTEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAALPGMDST 348 (355)
Q Consensus 303 ~v~~~~~~~~~~~~~~~-~~~~SA~~~~gv~~l~~~l~~~i~~~~~~ 348 (355)
.+..+++..+++..+++ ++++||++|.||+++|++|.+.+.+.+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 192 (194)
T 3reg_A 146 DVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNKPV 192 (194)
T ss_dssp CCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCSCC-
T ss_pred cccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhcCCC
Confidence 78888888899888887 99999999999999999999999876543
No 301
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.18 E-value=0.00083 Score=53.31 Aligned_cols=54 Identities=22% Similarity=0.279 Sum_probs=33.0
Q ss_pred ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 279 (355)
Q Consensus 226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i 279 (355)
+...+.+.+||++|.+.+..++..++..++++++|||++++.+++.+..|+..+
T Consensus 45 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~ 98 (166)
T 3q72_A 45 DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQL 98 (166)
T ss_dssp TTEEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 345678899999999999999999999999999999999999988887777655
No 302
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.18 E-value=0.00049 Score=57.37 Aligned_cols=74 Identities=36% Similarity=0.639 Sum_probs=63.6
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCceEEEEeeCCCCCCc
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDK 301 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~ 301 (355)
...+.+.+||++|++.+..++..++..++++++|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+.
T Consensus 54 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 54 GQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDD 128 (212)
T ss_dssp SCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTC
T ss_pred CEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhC
Confidence 34678899999999999999999999999999999999999999986 7998887765 58999999999998543
No 303
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.18 E-value=0.00091 Score=55.12 Aligned_cols=72 Identities=35% Similarity=0.688 Sum_probs=64.5
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSD 300 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~ 300 (355)
..+.+.+||++|.+.+..++..++.+++++++|||++++.+++.+. .|+..+.... .++|+++|+||+|+..
T Consensus 66 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 66 RPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLRE 138 (201)
T ss_dssp EEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGG
T ss_pred EEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhh
Confidence 4577889999999999999999999999999999999999999986 7988887765 5899999999999854
No 304
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.18 E-value=0.00051 Score=55.67 Aligned_cols=48 Identities=50% Similarity=0.980 Sum_probs=33.5
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 275 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~ 275 (355)
..+.+.+||++|++.+..++..++..++++++|||++++.+++.+..|
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 102 (183)
T 2fu5_C 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 102 (183)
T ss_dssp EEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHH
T ss_pred EEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHH
Confidence 457889999999999999999999999999999999998877765444
No 305
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.17 E-value=0.00095 Score=55.51 Aligned_cols=73 Identities=26% Similarity=0.592 Sum_probs=65.2
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSD 300 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~ 300 (355)
...+.+.+||++|++.+..++..++..++++++|||+++..+++.+ ..|+..+.... .+.|+++|+||+|+.+
T Consensus 73 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 73 TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRT 146 (205)
T ss_dssp SSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGG
T ss_pred CEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhcc
Confidence 3567899999999999999999999999999999999999999988 68988887765 5899999999999853
No 306
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.17 E-value=0.0006 Score=67.28 Aligned_cols=90 Identities=16% Similarity=0.043 Sum_probs=64.8
Q ss_pred eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHH
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEE 308 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~ 308 (355)
.+.+.+|||+|+..|...+..++..+|++++++|+++....+.. .+...+.. .++|+++++||+|+. . .....
T Consensus 73 ~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~---~~ip~ilv~NKiD~~-~--~~~~~ 145 (665)
T 2dy1_A 73 GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER---LGLPRMVVVTKLDKG-G--DYYAL 145 (665)
T ss_dssp TEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCEEEEEECGGGC-C--CHHHH
T ss_pred CEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH---ccCCEEEEecCCchh-h--hHHHH
Confidence 57789999999999988888899999999999999887664443 34444443 589999999999986 2 22333
Q ss_pred HHHHHhhcC---cEEEEecC
Q psy15725 309 GERKAKELN---VMFIETSA 325 (355)
Q Consensus 309 ~~~~~~~~~---~~~~~~SA 325 (355)
...+...++ ..++++|+
T Consensus 146 ~~~l~~~l~~~~~~~~Pi~~ 165 (665)
T 2dy1_A 146 LEDLRSTLGPILPIDLPLYE 165 (665)
T ss_dssp HHHHHHHHCSEEECEEEEEE
T ss_pred HHHHHHHhCCcceEEeeecC
Confidence 344444333 23567776
No 307
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.16 E-value=0.00062 Score=55.16 Aligned_cols=54 Identities=28% Similarity=0.509 Sum_probs=46.2
Q ss_pred ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 279 (355)
Q Consensus 226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i 279 (355)
+...+.+.+||++|++.+..++..++..++++++|||++++.+++.+..|+..+
T Consensus 62 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 115 (183)
T 3kkq_A 62 DNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI 115 (183)
T ss_dssp TTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred CCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 344667889999999999999999999999999999999998888877666544
No 308
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.16 E-value=0.00059 Score=55.47 Aligned_cols=116 Identities=16% Similarity=0.262 Sum_probs=95.6
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcccCCH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVST 306 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~ 306 (355)
+...+.+||++|.+.+...+..++..+|++++|+|++++.+++.+..|+..+.... ..++|+++|+||+|+.+... .
T Consensus 60 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~ 137 (186)
T 1ksh_A 60 RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--C 137 (186)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--H
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--H
Confidence 45788999999999999999999999999999999999999999988888876542 26899999999999965422 2
Q ss_pred HHHHHHH-----hhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 307 EEGERKA-----KELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 307 ~~~~~~~-----~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
.+..... ...+++++++||++|.||+++|++|.+.+.+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 138 NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 2222221 23467999999999999999999999998754
No 309
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.16 E-value=0.00057 Score=55.73 Aligned_cols=120 Identities=19% Similarity=0.237 Sum_probs=92.2
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcccCCH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVST 306 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~ 306 (355)
+.+.+.+||++|.+.+..++..++..+|++++|+|++++.+++.+..|+..+.... ..++|+++|+||+|+.+. ...
T Consensus 58 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~ 135 (187)
T 1zj6_A 58 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTV 135 (187)
T ss_dssp TTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCH
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCH
Confidence 34788999999999999999999999999999999999999999999998887643 268999999999999642 223
Q ss_pred HHHHHHH-----hhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCCCCC
Q psy15725 307 EEGERKA-----KELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349 (355)
Q Consensus 307 ~~~~~~~-----~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~~ 349 (355)
.+..... +..+++++++||++|.||+++|++|.+.+.......
T Consensus 136 ~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~ 183 (187)
T 1zj6_A 136 AEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRLEHH 183 (187)
T ss_dssp HHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC-----
T ss_pred HHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHHHhhhh
Confidence 3333222 235679999999999999999999999997765443
No 310
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.15 E-value=0.0012 Score=63.43 Aligned_cols=70 Identities=19% Similarity=0.117 Sum_probs=58.9
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCc
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 301 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 301 (355)
+...+.|+||||+..|..-....+.-+|++++|+|...+..-+...-|.... . .++|++++.||.|....
T Consensus 98 ~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~-~---~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 98 RDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCR-M---RATPVMTFVNKMDREAL 167 (548)
T ss_dssp TTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCCEEEEEECTTSCCC
T ss_pred CCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHH-H---hCCceEEEEecccchhc
Confidence 4678999999999999998888899999999999999998877765664443 3 58999999999998543
No 311
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.15 E-value=0.00084 Score=54.74 Aligned_cols=116 Identities=19% Similarity=0.305 Sum_probs=94.4
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcccCCH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVST 306 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~ 306 (355)
+...+.+||++|++.+...+..++..+|++++|+|++++.+++.+..|+..+.... ..++|+++|+||+|+.+... .
T Consensus 64 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~ 141 (189)
T 2x77_A 64 KNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--E 141 (189)
T ss_dssp TTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--H
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--H
Confidence 35788999999999999999999999999999999999999999888888776543 25899999999999965422 1
Q ss_pred HHHHH-----HHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 307 EEGER-----KAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 307 ~~~~~-----~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
.+... .+...++++++|||++|.||+++|++|.+.+.+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 142 AEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence 22211 2233457899999999999999999999988654
No 312
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.14 E-value=0.00058 Score=55.97 Aligned_cols=73 Identities=32% Similarity=0.594 Sum_probs=65.1
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCceEEEEeeCCCCCCc
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDK 301 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~ 301 (355)
..+.+.+||++|++.+..++..++..++++++|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+.
T Consensus 64 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 64 KQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDD 137 (194)
T ss_dssp CEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTC
T ss_pred EEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccc
Confidence 4578899999999999999999999999999999999999999987 7888887754 58999999999998643
No 313
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.13 E-value=0.001 Score=53.81 Aligned_cols=73 Identities=38% Similarity=0.671 Sum_probs=64.6
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSD 300 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~ 300 (355)
...+.+.+||++|.+.+..++..++..++++++|+|++++.+++.+. .|+..+.... .++|+++|+||+|+.+
T Consensus 50 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~ 123 (186)
T 1mh1_A 50 GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 123 (186)
T ss_dssp TEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHT
T ss_pred CEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccc
Confidence 34677889999999999999999999999999999999999999987 6888887755 4899999999999854
No 314
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.13 E-value=0.00095 Score=55.14 Aligned_cols=54 Identities=30% Similarity=0.420 Sum_probs=46.9
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHH
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 280 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~ 280 (355)
...+.+.+||++|.+.+..++..++..++++++|||+++..+++.+..|+..+.
T Consensus 69 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~ 122 (201)
T 3oes_A 69 KDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLH 122 (201)
T ss_dssp --CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 346788999999999999999999999999999999999999888877776653
No 315
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.12 E-value=0.00013 Score=70.24 Aligned_cols=70 Identities=20% Similarity=0.320 Sum_probs=51.5
Q ss_pred EEEEEeCCCccc-----------ccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCC
Q psy15725 231 RLQLWDTAGQER-----------FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS 299 (355)
Q Consensus 231 ~~~i~D~~g~~~-----------~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 299 (355)
.+.++||+|... +...+..++..+|++++|+|+++.........++..+.. .+.|+++|+||+|+.
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HEDKIRVVLNKADMV 231 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CGGGEEEEEECGGGS
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cCCCEEEEEECCCcc
Confidence 467999999654 334555678899999999999875444445556655543 468999999999987
Q ss_pred Cccc
Q psy15725 300 DKRQ 303 (355)
Q Consensus 300 ~~~~ 303 (355)
+.+.
T Consensus 232 ~~~e 235 (550)
T 2qpt_A 232 ETQQ 235 (550)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 5443
No 316
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.10 E-value=0.0016 Score=58.15 Aligned_cols=73 Identities=38% Similarity=0.664 Sum_probs=64.2
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSD 300 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~ 300 (355)
...+.+.+||++|.+.+...+..++..++++++|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+
T Consensus 200 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 200 GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 273 (332)
T ss_dssp TEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHT
T ss_pred CEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhccc
Confidence 34677889999999999999999999999999999999999999886 6888887755 4899999999999853
No 317
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.08 E-value=0.00011 Score=61.75 Aligned_cols=50 Identities=48% Similarity=0.592 Sum_probs=43.4
Q ss_pred ccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVR 231 (355)
Q Consensus 182 ~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~ 231 (355)
++|+++|+||+|+.+.+.+..++...++...+++++++||.++.++++++
T Consensus 145 ~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf 194 (211)
T 2g3y_A 145 DIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 194 (211)
T ss_dssp TSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred CCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 79999999999998777777777778888888999999999999988654
No 318
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.08 E-value=0.0085 Score=54.27 Aligned_cols=58 Identities=12% Similarity=0.043 Sum_probs=39.3
Q ss_pred CCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCC----------------------CCCHHHHHHHHHHHc
Q psy15725 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA----------------------GYNVKQLFRRVAAAL 342 (355)
Q Consensus 285 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~----------------------~~gv~~l~~~l~~~i 342 (355)
..+|+++++||.|..-..........+++...+.+++++||+. ..|++++.....+.+
T Consensus 198 t~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~E~el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L 277 (363)
T 1jal_A 198 TLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALL 277 (363)
T ss_dssp TTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHHHHHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHT
T ss_pred cCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHHHHHHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHh
Confidence 3599999999999632111123344556666788999999763 367888877776654
No 319
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.08 E-value=0.0014 Score=52.63 Aligned_cols=56 Identities=36% Similarity=0.689 Sum_probs=50.8
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER 283 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~ 283 (355)
..+.+.+||++|.+.+...+..++..++++++|+|+++..+++.+..|+..+....
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 109 (177)
T 1wms_A 54 HFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYA 109 (177)
T ss_dssp EEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH
T ss_pred EEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHc
Confidence 45788999999999999999999999999999999999999999989998887654
No 320
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.08 E-value=0.00082 Score=54.93 Aligned_cols=54 Identities=41% Similarity=0.903 Sum_probs=48.4
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHH
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR 280 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~ 280 (355)
...+.+.+||++|++.+..++..++..++++++|+|++++.+++.+..|+..+.
T Consensus 61 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~ 114 (195)
T 1x3s_A 61 GNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELE 114 (195)
T ss_dssp TEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHT
T ss_pred CeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 346788999999999999999999999999999999999999988888887764
No 321
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.07 E-value=0.00069 Score=56.09 Aligned_cols=51 Identities=53% Similarity=0.988 Sum_probs=44.5
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 278 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~ 278 (355)
..+.+.+||++|++.+..++..++..++++++|||+++..+++.+..|+..
T Consensus 76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~ 126 (201)
T 2hup_A 76 KRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIED 126 (201)
T ss_dssp EEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHH
T ss_pred EEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999999998888777666544
No 322
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.07 E-value=0.0011 Score=55.70 Aligned_cols=119 Identities=28% Similarity=0.536 Sum_probs=102.6
Q ss_pred ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCC
Q psy15725 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVS 305 (355)
Q Consensus 226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~ 305 (355)
+...+.+.+||++|++.+..++..++..++++++|||+++..+++.+..|+..+.... .++|+++|+||+|+.+... .
T Consensus 60 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~-~ 137 (221)
T 3gj0_A 60 NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV-K 137 (221)
T ss_dssp TTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSS-C
T ss_pred CCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCccccccc-c
Confidence 3456788999999999999999999999999999999999999999999999988765 5899999999999964432 2
Q ss_pred HHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCCC
Q psy15725 306 TEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347 (355)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~ 347 (355)
. +...+++..+++++++||++|.||+++|++|.+.+.....
T Consensus 138 ~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 138 A-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPN 178 (221)
T ss_dssp G-GGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTCTT
T ss_pred H-HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhCcc
Confidence 2 4445666778999999999999999999999999877654
No 323
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.06 E-value=0.0012 Score=53.86 Aligned_cols=55 Identities=24% Similarity=0.393 Sum_probs=45.4
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhh
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE 282 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~ 282 (355)
...+.+.+||++|++.+..+ ..++..++++++|||+++..+++.+..|+..+...
T Consensus 66 ~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~ 120 (187)
T 3c5c_A 66 HQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALH 120 (187)
T ss_dssp TEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 45678899999999988875 56889999999999999999999999999888774
No 324
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.05 E-value=0.00073 Score=53.65 Aligned_cols=116 Identities=39% Similarity=0.598 Sum_probs=105.2
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE 307 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~ 307 (355)
..+.+.+||++|++.+..++..++..++++++|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+.+..+
T Consensus 52 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~ 130 (168)
T 1z2a_A 52 EDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNE 130 (168)
T ss_dssp EEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHH
T ss_pred EEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHH
Confidence 45788999999999999999999999999999999999999999999999887765 68999999999999877778888
Q ss_pred HHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725 308 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344 (355)
Q Consensus 308 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~ 344 (355)
+...+++..+++++++||++|.||+++|++|.+.+.+
T Consensus 131 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 131 EAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 8888888889999999999999999999999988754
No 325
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.05 E-value=0.00061 Score=55.34 Aligned_cols=116 Identities=22% Similarity=0.326 Sum_probs=92.2
Q ss_pred eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcccCCHH
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTE 307 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~ 307 (355)
.+.+.+||++|++.++..+..++..++++++|+|+++..+++.+..|+..+.... ..++|+++|+||+|+.+... ..
T Consensus 59 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~ 136 (181)
T 1fzq_A 59 GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--AS 136 (181)
T ss_dssp TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HH
T ss_pred CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HH
Confidence 5678999999999999999999999999999999999999999888888775532 26899999999999965432 22
Q ss_pred HHHHH-----HhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725 308 EGERK-----AKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346 (355)
Q Consensus 308 ~~~~~-----~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~ 346 (355)
+.... +...++++++|||++|.||+++|++|.+.+.+.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 180 (181)
T 1fzq_A 137 EIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAKK 180 (181)
T ss_dssp HHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC----
T ss_pred HHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHhcc
Confidence 22221 1234578999999999999999999999987653
No 326
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.05 E-value=0.0015 Score=54.18 Aligned_cols=120 Identities=40% Similarity=0.688 Sum_probs=108.6
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE 307 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~ 307 (355)
..+.+.+||++|.+.+..++..++..++++++|||+++..+++.+..|+..+......++|+++|+||+|+.+.+.+..+
T Consensus 73 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~ 152 (201)
T 2ew1_A 73 EKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQ 152 (201)
T ss_dssp EEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHH
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHH
Confidence 46788999999999999999999999999999999999999999999999988776578999999999999877788888
Q ss_pred HHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCCC
Q psy15725 308 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347 (355)
Q Consensus 308 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~ 347 (355)
++..+++..+++++++||++|.||+++|++|.+.+....+
T Consensus 153 ~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~ 192 (201)
T 2ew1_A 153 RAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEAR 192 (201)
T ss_dssp HHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 8888888888999999999999999999999999876543
No 327
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.03 E-value=0.00057 Score=55.82 Aligned_cols=52 Identities=50% Similarity=1.003 Sum_probs=45.4
Q ss_pred ceEEEEEEeCCCccccc-ccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725 228 KQVRLQLWDTAGQERFR-SLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 279 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~-~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i 279 (355)
..+.+.+||++|.+.+. .++..++..++++++|+|+++..+++.+..|+..+
T Consensus 67 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i 119 (189)
T 1z06_A 67 ERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEEC 119 (189)
T ss_dssp EEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred EEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 45788999999999998 78889999999999999999998888877776655
No 328
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.01 E-value=0.0014 Score=63.98 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHhhhcC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDS 37 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~ 37 (355)
.|+|+|++|||||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 39999999999999999999864
No 329
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.01 E-value=0.0006 Score=55.07 Aligned_cols=73 Identities=38% Similarity=0.677 Sum_probs=61.0
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCceEEEEeeCCCCCCc
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDK 301 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~ 301 (355)
..+.+.+||++|++.+...+..++..++++++|+|++++.+++.+. .|+..+.... .++|+++|+||+|+.+.
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 54 ATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDD 127 (182)
T ss_dssp ----CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTC
T ss_pred EEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcC
Confidence 3566789999999999999999999999999999999999999987 6888887765 48999999999998543
No 330
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.00 E-value=0.0011 Score=52.88 Aligned_cols=51 Identities=53% Similarity=1.004 Sum_probs=37.7
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 278 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~ 278 (355)
..+.+.+||++|++.+..++..++..++++++|+|+++..+++.+..|+..
T Consensus 53 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~ 103 (170)
T 1z08_A 53 KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKE 103 (170)
T ss_dssp CEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHH
T ss_pred EEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999998887776666544
No 331
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.99 E-value=0.00076 Score=53.49 Aligned_cols=53 Identities=26% Similarity=0.512 Sum_probs=46.1
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 279 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i 279 (355)
...+.+.+||++|.+.+..++..++..++++++|+|++++.+++.+..|+..+
T Consensus 48 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i 100 (167)
T 1c1y_A 48 CQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQI 100 (167)
T ss_dssp SCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred CEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999998888777666554
No 332
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.99 E-value=0.00083 Score=55.19 Aligned_cols=114 Identities=39% Similarity=0.731 Sum_probs=102.0
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE 307 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~ 307 (355)
....+.+||++|++.+...+..++..+|++++|+|++++.+++.+..|+..+.... +.|+++|+||+| ...+.+..+
T Consensus 91 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-~~~~~~~~~ 167 (208)
T 3clv_A 91 CNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-KNKFQVDIL 167 (208)
T ss_dssp CEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-CC-CCSCHH
T ss_pred ceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-cccccCCHH
Confidence 34788999999999999999999999999999999999999999999999987764 499999999999 555677788
Q ss_pred HHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725 308 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344 (355)
Q Consensus 308 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~ 344 (355)
+...+++..+++++++||++|.||+++|++|.+.+.+
T Consensus 168 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 168 EVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp HHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 8888888889999999999999999999999988754
No 333
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.99 E-value=0.0015 Score=54.09 Aligned_cols=74 Identities=36% Similarity=0.630 Sum_probs=65.4
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCceEEEEeeCCCCCCc
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDK 301 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~ 301 (355)
...+.+.+||++|.+.+..++..++..++++++|||+++..+++.+. .|+..+.... .++|+++|+||+|+.+.
T Consensus 75 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 149 (204)
T 4gzl_A 75 GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 149 (204)
T ss_dssp -CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTC
T ss_pred CEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccc
Confidence 35677889999999999999999999999999999999999999986 7888887765 68999999999998644
No 334
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.98 E-value=0.0011 Score=54.97 Aligned_cols=51 Identities=49% Similarity=0.961 Sum_probs=44.5
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 278 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~ 278 (355)
..+.+.+||++|++.+..++..++..++++++|||++++.+++.+..|+..
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~ 105 (206)
T 2bcg_Y 55 KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQE 105 (206)
T ss_dssp EEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHH
T ss_pred EEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999998888776666543
No 335
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.98 E-value=0.00097 Score=53.71 Aligned_cols=48 Identities=50% Similarity=0.960 Sum_probs=33.9
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 275 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~ 275 (355)
..+.+.+||++|++.+..++..++..++++++|+|++++.+++.+..|
T Consensus 58 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~ 105 (180)
T 2g6b_A 58 VKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAW 105 (180)
T ss_dssp EEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHH
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHH
Confidence 457889999999999999999999999999999999998777655443
No 336
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.97 E-value=0.00073 Score=55.09 Aligned_cols=53 Identities=43% Similarity=0.866 Sum_probs=48.5
Q ss_pred eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHh
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT 281 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~ 281 (355)
.+.+.+||++|.+.+...+..++..+|++++|+|++++.+++.+..|+..+..
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 121 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQM 121 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999888888888765
No 337
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.95 E-value=0.00097 Score=52.82 Aligned_cols=53 Identities=28% Similarity=0.542 Sum_probs=43.0
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 279 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i 279 (355)
...+.+.+||++|.+.+..++..++..++++++|+|++++.+++.+..|+..+
T Consensus 49 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i 101 (168)
T 1u8z_A 49 GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI 101 (168)
T ss_dssp TEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 34578899999999999999999999999999999999998888776666554
No 338
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.95 E-value=0.00079 Score=54.96 Aligned_cols=117 Identities=21% Similarity=0.337 Sum_probs=93.3
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcccCCH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVST 306 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~ 306 (355)
..+.+.+||++|.+.+..++..++..++++++|+|+++..+++.+..|+..+.... ..++|+++|+||+|+.+.. ..
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~ 142 (188)
T 1zd9_A 65 GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DE 142 (188)
T ss_dssp TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CH
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CH
Confidence 35778999999999999999999999999999999999999999988888876542 2689999999999996432 22
Q ss_pred HHHHHH-----HhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725 307 EEGERK-----AKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346 (355)
Q Consensus 307 ~~~~~~-----~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~ 346 (355)
.+.... ....+++++++||++|.||+++|++|.+.+.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 187 (188)
T 1zd9_A 143 KELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 187 (188)
T ss_dssp HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC---
T ss_pred HHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 222221 1224578999999999999999999999987654
No 339
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.001 Score=55.94 Aligned_cols=52 Identities=38% Similarity=0.919 Sum_probs=44.1
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 279 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i 279 (355)
..+.+.+||++|++.+..++..++..++++++|||++++.+++.+..|+..+
T Consensus 60 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i 111 (223)
T 3cpj_B 60 KRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSEL 111 (223)
T ss_dssp EEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHH
T ss_pred EEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999999998887776665443
No 340
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.94 E-value=0.0013 Score=52.90 Aligned_cols=50 Identities=32% Similarity=0.557 Sum_probs=43.3
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 277 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~ 277 (355)
..+.+.+||++|++.+..++..++..++++++|+|+++..+++.+..|+.
T Consensus 55 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~ 104 (181)
T 2fn4_A 55 IPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFT 104 (181)
T ss_dssp EEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHH
T ss_pred EEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999888777665554
No 341
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.94 E-value=0.0013 Score=54.35 Aligned_cols=73 Identities=41% Similarity=0.692 Sum_probs=64.3
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCceEEEEeeCCCCCCc
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDK 301 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 301 (355)
..+.+.+||++|++.+..++..++..++++++|||+++..+++.+ ..|...+.... .++|+++|+||+|+.+.
T Consensus 71 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 71 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQD 144 (201)
T ss_dssp EEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTC
T ss_pred EEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcC
Confidence 457889999999999999999999999999999999999999988 57888877654 58999999999998643
No 342
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.93 E-value=0.0023 Score=52.04 Aligned_cols=52 Identities=27% Similarity=0.517 Sum_probs=34.9
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 279 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i 279 (355)
..+.+.+||++|.+.+...+..++..++++++|+|+++..+++.+..|+..+
T Consensus 67 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i 118 (190)
T 3con_A 67 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQI 118 (190)
T ss_dssp EEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred EEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 4577899999999999999999999999999999999998888776666554
No 343
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.93 E-value=0.0015 Score=51.89 Aligned_cols=118 Identities=44% Similarity=0.794 Sum_probs=106.2
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCc---cc
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK---RQ 303 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~---~~ 303 (355)
...+.+.+||++|++.+...+..++..++++++|+|++++.+++.+..|+..+......++|+++|+||+|+... +.
T Consensus 49 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~ 128 (170)
T 1ek0_A 49 EHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERK 128 (170)
T ss_dssp TEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCC
T ss_pred CEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccC
Confidence 346788999999999999999999999999999999999999999999999988776578999999999999754 67
Q ss_pred CCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725 304 VSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344 (355)
Q Consensus 304 v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~ 344 (355)
+..++...+++..+++++++||++|.|++++|++|.+.+++
T Consensus 129 v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 129 VAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPL 169 (170)
T ss_dssp SCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTSCC
T ss_pred CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 77788888888888999999999999999999999998864
No 344
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.91 E-value=0.0011 Score=53.40 Aligned_cols=48 Identities=48% Similarity=1.003 Sum_probs=41.6
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 275 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~ 275 (355)
..+.+.+||++|++.+...+..++..++++++|+|++++.+++.+..|
T Consensus 59 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 106 (181)
T 2efe_B 59 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKW 106 (181)
T ss_dssp EEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHH
T ss_pred EEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHH
Confidence 467889999999999999999999999999999999988777665443
No 345
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.91 E-value=0.00091 Score=55.29 Aligned_cols=55 Identities=29% Similarity=0.599 Sum_probs=51.1
Q ss_pred eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER 283 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~ 283 (355)
.+.+.+||++|.+.+..++..++..++++++|+|++++.+++.+..|+..+....
T Consensus 72 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 126 (208)
T 2yc2_C 72 SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSAR 126 (208)
T ss_dssp EEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhh
Confidence 6788999999999999999999999999999999999999999999999998864
No 346
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.90 E-value=0.0014 Score=53.18 Aligned_cols=117 Identities=31% Similarity=0.504 Sum_probs=101.1
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC-CCceEEEEeeCCCCCCcccCC
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDKRQVS 305 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~v~ 305 (355)
...+.+.+||++|++.+..++..++..++++++|+|+++..+++.+..|...+..... .++|+++|+||+|+. .+.+.
T Consensus 49 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~ 127 (189)
T 4dsu_A 49 GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVD 127 (189)
T ss_dssp TEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS-SCSSC
T ss_pred CcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc-ccccC
Confidence 3456788999999999999999999999999999999999999999999988877543 689999999999986 45566
Q ss_pred HHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725 306 TEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344 (355)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~ 344 (355)
.+....+++..+++++++||++|.||+++|++|.+.+..
T Consensus 128 ~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 128 TKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166 (189)
T ss_dssp HHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 778888888889999999999999999999999998864
No 347
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.89 E-value=0.0014 Score=53.43 Aligned_cols=51 Identities=41% Similarity=0.868 Sum_probs=44.0
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 278 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~ 278 (355)
..+.+.+||++|.+.+...+..++..++++++|+|+++..+++.+..|+..
T Consensus 69 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~ 119 (189)
T 2gf9_A 69 KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQ 119 (189)
T ss_dssp EEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHH
T ss_pred eEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999998887766555443
No 348
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.89 E-value=0.0017 Score=51.56 Aligned_cols=117 Identities=42% Similarity=0.791 Sum_probs=106.7
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE 307 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~ 307 (355)
..+.+.+||++|++.+...+..++..++++++|+|++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+
T Consensus 53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~ 132 (170)
T 1r2q_A 53 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 132 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHH
T ss_pred EEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHH
Confidence 46788999999999999999999999999999999999999999999999988776578999999999999777778788
Q ss_pred HHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725 308 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344 (355)
Q Consensus 308 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~ 344 (355)
+...+++..+++++++||++|.|++++|++|.+.+++
T Consensus 133 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 133 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTSCC
T ss_pred HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 8888888889999999999999999999999998864
No 349
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.88 E-value=0.001 Score=54.42 Aligned_cols=51 Identities=51% Similarity=0.980 Sum_probs=44.2
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 278 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~ 278 (355)
..+.+.+||++|++.+..++..++..++++++|+|+++..+++.+..|+..
T Consensus 68 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~ 118 (191)
T 2a5j_A 68 KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLED 118 (191)
T ss_dssp EEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHH
T ss_pred EEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999998888776666543
No 350
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.88 E-value=0.0014 Score=54.83 Aligned_cols=73 Identities=38% Similarity=0.707 Sum_probs=50.5
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCceEEEEeeCCCCCCc
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDK 301 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~ 301 (355)
..+.+.+||++|++.+..++..++..++++++|||++++.+++.+. .|+..+.... .++|+++|+||+|+...
T Consensus 80 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 80 KPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKD 153 (214)
T ss_dssp EEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSC
T ss_pred EEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhcc
Confidence 4668899999999999999999999999999999999999999986 6888887654 68999999999998644
No 351
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.87 E-value=0.0026 Score=52.47 Aligned_cols=117 Identities=36% Similarity=0.597 Sum_probs=101.8
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC----CCceEEEEeeCCCCCCccc
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG----SDVIIMLVGNKTDLSDKRQ 303 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~~~ 303 (355)
..+.+.+||++|++.+..++..++..+|++++|+|++++.+++.+..|+..+..... .++|+++|+||+|+. .+.
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~ 133 (207)
T 1vg8_A 55 RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQ 133 (207)
T ss_dssp CEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCC
T ss_pred EEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccc
Confidence 457889999999999999999999999999999999999999999999988866543 478999999999997 455
Q ss_pred CCHHHHHHHHh-hcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 304 VSTEEGERKAK-ELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 304 v~~~~~~~~~~-~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
+...+...+++ ..+++++++||++|.||+++|++|.+.+.+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 176 (207)
T 1vg8_A 134 VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 176 (207)
T ss_dssp SCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 66677777776 5678999999999999999999999988643
No 352
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.86 E-value=0.0013 Score=53.22 Aligned_cols=52 Identities=29% Similarity=0.573 Sum_probs=45.2
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 279 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i 279 (355)
..+.+.+||++|.+.+..++..++..++++++|||+++..+++.+..|+..+
T Consensus 64 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i 115 (187)
T 2a9k_A 64 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI 115 (187)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred EEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999998887776666554
No 353
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.86 E-value=0.0049 Score=56.09 Aligned_cols=45 Identities=22% Similarity=0.173 Sum_probs=30.2
Q ss_pred CceEEEEeeCCCC--CCc-ccCCHHHHHHHHhhcCcEEEEecCCCCCC
Q psy15725 286 DVIIMLVGNKTDL--SDK-RQVSTEEGERKAKELNVMFIETSAKAGYN 330 (355)
Q Consensus 286 ~~piilv~nK~Dl--~~~-~~v~~~~~~~~~~~~~~~~~~~SA~~~~g 330 (355)
.+|+++++||.|. .+. ..........+++..+.+++++||+...+
T Consensus 201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~e 248 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAE 248 (368)
T ss_dssp GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHH
T ss_pred cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHH
Confidence 4899999999983 221 01223444566666788999999987433
No 354
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.86 E-value=0.0003 Score=57.63 Aligned_cols=49 Identities=41% Similarity=0.631 Sum_probs=43.5
Q ss_pred ccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceE
Q psy15725 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230 (355)
Q Consensus 182 ~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i 230 (355)
++|+++|+||+|+.+.+.+...+...++...+.+++++|+.++.+++++
T Consensus 128 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 176 (191)
T 3dz8_A 128 NAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQA 176 (191)
T ss_dssp TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred CCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 5899999999999887888888888899999999999999999887754
No 355
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.85 E-value=0.0015 Score=51.92 Aligned_cols=53 Identities=17% Similarity=0.280 Sum_probs=39.4
Q ss_pred cceEEEEEEeCCCcccccc-cccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725 227 VKQVRLQLWDTAGQERFRS-LIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 279 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~-~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i 279 (355)
...+.+.+||++|.+.+.. ++..++..++++++|||++++.+++.+..|+..+
T Consensus 48 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 101 (169)
T 3q85_A 48 KEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRL 101 (169)
T ss_dssp TEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred CeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHH
Confidence 3467888999999998876 6778889999999999999999988887776654
No 356
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.85 E-value=0.0025 Score=52.89 Aligned_cols=73 Identities=38% Similarity=0.676 Sum_probs=64.1
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCceEEEEeeCCCCCCc
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDK 301 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 301 (355)
..+.+.+||++|++.+..++..++..++++++|||++++.+++.+ ..|+..+.... .++|+++|+||+|+.+.
T Consensus 71 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 71 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSD 144 (207)
T ss_dssp EEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGC
T ss_pred EEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhcc
Confidence 457889999999999999999999999999999999999999888 57888877654 58999999999998643
No 357
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.84 E-value=0.0019 Score=52.31 Aligned_cols=120 Identities=43% Similarity=0.688 Sum_probs=108.4
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE 307 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~ 307 (355)
..+.+.+||++|.+.+...+..++..++++++|+|++++.+++.+..|+..+......++|+++|+||+|+...+.+...
T Consensus 57 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 136 (186)
T 2bme_A 57 KYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFL 136 (186)
T ss_dssp EEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHH
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHH
Confidence 45788999999999999999999999999999999999999999999998887766578999999999999777778888
Q ss_pred HHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCCC
Q psy15725 308 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347 (355)
Q Consensus 308 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~ 347 (355)
++..+++..+++++++||++|.||+++|++|.+.+.+...
T Consensus 137 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 176 (186)
T 2bme_A 137 EASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIE 176 (186)
T ss_dssp HHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHhh
Confidence 8888888899999999999999999999999998876543
No 358
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.84 E-value=0.00041 Score=60.02 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=22.2
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhh
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~ 35 (355)
.....++++|.+|||||||++++..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 4567899999999999999999984
No 359
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.82 E-value=0.0025 Score=52.12 Aligned_cols=52 Identities=50% Similarity=0.899 Sum_probs=45.0
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHH
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 278 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~ 278 (355)
...+.+.+||++|.+.+...+..++..++++++|+|+++..+++.+..|+..
T Consensus 69 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~ 120 (192)
T 2fg5_A 69 NELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKE 120 (192)
T ss_dssp SSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHH
T ss_pred CEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999888776666543
No 360
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.80 E-value=0.0015 Score=53.97 Aligned_cols=53 Identities=28% Similarity=0.542 Sum_probs=46.0
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 279 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i 279 (355)
...+.+.+||++|.+.+..++..++..++++++|||+++..+++.+..|+..+
T Consensus 59 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i 111 (206)
T 2bov_A 59 GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI 111 (206)
T ss_dssp TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 34578899999999999999999999999999999999998888877776554
No 361
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.80 E-value=0.0013 Score=52.89 Aligned_cols=118 Identities=36% Similarity=0.547 Sum_probs=93.0
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC----CCceEEEEeeCCCCCC-cc
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG----SDVIIMLVGNKTDLSD-KR 302 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~-~~ 302 (355)
..+.+.+||++|++.+...+..++..++++++|+|++++.+++.+..|+..+..... .++|+++|+||+|+.. .+
T Consensus 56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 135 (182)
T 1ky3_A 56 KVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKK 135 (182)
T ss_dssp CCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGC
T ss_pred cEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccc
Confidence 356789999999999999999999999999999999999999999999988876543 6899999999999954 34
Q ss_pred cCCHHHHHHHHh-hcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 303 QVSTEEGERKAK-ELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 303 ~v~~~~~~~~~~-~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
.+..++...+++ ..+++++++||++|.||+++|++|.+.+.+.
T Consensus 136 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 136 IVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp CSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 567777777877 4568999999999999999999999988654
No 362
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.80 E-value=0.0013 Score=54.14 Aligned_cols=53 Identities=17% Similarity=0.280 Sum_probs=44.9
Q ss_pred cceEEEEEEeCCCcccccc-cccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725 227 VKQVRLQLWDTAGQERFRS-LIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 279 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~-~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i 279 (355)
...+.+.+||++|.+.+.. ++..++..++++++|||+++..+++.+..|+..+
T Consensus 69 ~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i 122 (195)
T 3cbq_A 69 KEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRL 122 (195)
T ss_dssp TEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred CEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 3467888999999987765 7778889999999999999999998888887654
No 363
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.79 E-value=0.0025 Score=52.01 Aligned_cols=119 Identities=34% Similarity=0.625 Sum_probs=107.6
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCH
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST 306 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~ 306 (355)
...+.+.+||++|.+.+..++..++..++++++|+|++++.++..+..|+..+......++|+++|+||+|+.+.+.+..
T Consensus 71 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~ 150 (193)
T 2oil_A 71 TAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPT 150 (193)
T ss_dssp TEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCH
T ss_pred CEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCH
Confidence 45678899999999999999999999999999999999999999999999998776557899999999999987777888
Q ss_pred HHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 307 EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 307 ~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
.++..+++..+++++++||++|.||+++|++|.+.+.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 189 (193)
T 2oil_A 151 EEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAK 189 (193)
T ss_dssp HHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 888888888899999999999999999999999988654
No 364
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.78 E-value=0.0019 Score=52.74 Aligned_cols=52 Identities=46% Similarity=0.985 Sum_probs=45.1
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 279 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i 279 (355)
..+.+.+||++|++.+..++..++..+|++++|+|+++..+++.+..|+..+
T Consensus 63 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i 114 (196)
T 3tkl_A 63 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 114 (196)
T ss_dssp EEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred EEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999988887776665543
No 365
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.78 E-value=0.00066 Score=55.26 Aligned_cols=22 Identities=36% Similarity=0.724 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChhHHHHHhhh
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~ 35 (355)
++++++|++|+|||||++.+.+
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999887
No 366
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.75 E-value=0.0023 Score=52.69 Aligned_cols=49 Identities=43% Similarity=0.891 Sum_probs=42.0
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHH
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 275 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~ 275 (355)
...+.+.+||++|.+.+..++..++..++++++|+|++++.+++.+..|
T Consensus 54 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~ 102 (203)
T 1zbd_A 54 DKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW 102 (203)
T ss_dssp TEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHH
T ss_pred CeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHH
Confidence 3467889999999999999999999999999999999998777655443
No 367
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=96.75 E-value=0.001 Score=59.44 Aligned_cols=56 Identities=14% Similarity=0.129 Sum_probs=48.6
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCC-------CcccHHHHHHHHHHHHhhc
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT-------NANSFHQTSKWIDDVRTER 283 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~-------~~~s~~~~~~~~~~i~~~~ 283 (355)
+.+.+.+||++|++.++.+|..++.+++++|+|+|++ +..+...+.++...+.+..
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~ 227 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTII 227 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHH
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHh
Confidence 4688999999999999999999999999999999998 6667777777777777643
No 368
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.75 E-value=0.0011 Score=52.62 Aligned_cols=117 Identities=41% Similarity=0.742 Sum_probs=105.2
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE 307 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~ 307 (355)
..+.+.+||++|++.+...+..++..++++++|+|++++.+++.+..|+..+......++|+++|+||+|+ ..+.+..+
T Consensus 50 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~ 128 (170)
T 1g16_A 50 KKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTAD 128 (170)
T ss_dssp CEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHH
T ss_pred EEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHH
Confidence 45778999999999999999999999999999999999999999999999988776578999999999999 45567777
Q ss_pred HHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 308 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 308 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
+...+++..+++++++||++|.||+++|++|.+.+.++
T Consensus 129 ~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 129 QGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 88888888889999999999999999999999998754
No 369
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.75 E-value=0.0024 Score=51.17 Aligned_cols=50 Identities=94% Similarity=1.414 Sum_probs=43.1
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 277 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~ 277 (355)
..+.+.+||++|.+.+...+..++..++++++|+|++++.+++.+..|+.
T Consensus 61 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~ 110 (179)
T 2y8e_A 61 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWID 110 (179)
T ss_dssp EEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHH
T ss_pred eEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999888776655543
No 370
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.73 E-value=0.003 Score=50.07 Aligned_cols=49 Identities=45% Similarity=0.885 Sum_probs=41.7
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHH
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 275 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~ 275 (355)
.....+.+||++|.+.+...+..++..++++++|+|++++.+++.+..|
T Consensus 52 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 100 (170)
T 1z0j_A 52 NELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNW 100 (170)
T ss_dssp TEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHH
T ss_pred CeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHH
Confidence 3457789999999999999999999999999999999998777655433
No 371
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.72 E-value=0.0019 Score=50.97 Aligned_cols=52 Identities=31% Similarity=0.532 Sum_probs=45.1
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 279 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i 279 (355)
..+.+.+||++|++.+..++..++..++++++|+|++++.+++.+..|...+
T Consensus 49 ~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i 100 (167)
T 1kao_A 49 SPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQI 100 (167)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred EEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999998887776666554
No 372
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.71 E-value=0.0025 Score=51.82 Aligned_cols=116 Identities=22% Similarity=0.384 Sum_probs=101.3
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC-CCceEEEEeeCCCCC--Cccc
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLS--DKRQ 303 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~--~~~~ 303 (355)
...+.+.+||++|++.+. ++..++++++|||+++..+++.+..|+..+..... .++|+++|+||+|+. ..+.
T Consensus 64 ~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~ 138 (184)
T 3ihw_A 64 GQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRV 138 (184)
T ss_dssp TEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCC
T ss_pred CEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccc
Confidence 346788999999998876 77889999999999999999999999999977653 579999999999994 5677
Q ss_pred CCHHHHHHHHhhcC-cEEEEecCCCCCCHHHHHHHHHHHcCCCCC
Q psy15725 304 VSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRRVAAALPGMDS 347 (355)
Q Consensus 304 v~~~~~~~~~~~~~-~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~ 347 (355)
+..+++..+++..+ +++++|||++|.||+++|++|.+.+...++
T Consensus 139 v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 139 IDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALRK 183 (184)
T ss_dssp SCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHHhc
Confidence 88888888998887 899999999999999999999998876554
No 373
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.70 E-value=0.0022 Score=50.57 Aligned_cols=52 Identities=27% Similarity=0.538 Sum_probs=44.5
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 279 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i 279 (355)
..+.+.+||++|.+.+...+..++..++++++|+|+++..+++.+..|+..+
T Consensus 49 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i 100 (166)
T 2ce2_X 49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI 100 (166)
T ss_dssp EEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred EEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 4577889999999999999999999999999999999988877776665544
No 374
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.70 E-value=0.0017 Score=53.96 Aligned_cols=117 Identities=41% Similarity=0.743 Sum_probs=104.4
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE 307 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~ 307 (355)
..+.+.+||++|.+.+...+..++..++++++|||++++.+++.+..|+..+......++|+++|+||+|+ ..+.+..+
T Consensus 67 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~ 145 (213)
T 3cph_A 67 KKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTAD 145 (213)
T ss_dssp EEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHH
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHH
Confidence 35788999999999999999999999999999999999999999999999987766568999999999999 45667777
Q ss_pred HHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 308 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 308 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
+...+++..+++++++||++|.||+++|++|.+.+...
T Consensus 146 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 183 (213)
T 3cph_A 146 QGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 183 (213)
T ss_dssp HHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 77888888889999999999999999999999988653
No 375
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.70 E-value=0.0029 Score=52.20 Aligned_cols=50 Identities=50% Similarity=0.939 Sum_probs=43.8
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 277 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~ 277 (355)
..+.+.+||++|.+.+..++..++..++++++|+|++++.+++.+..|+.
T Consensus 72 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~ 121 (200)
T 2o52_A 72 KTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLT 121 (200)
T ss_dssp EEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHH
T ss_pred eeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999888877665554
No 376
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.70 E-value=0.0015 Score=51.98 Aligned_cols=54 Identities=22% Similarity=0.350 Sum_probs=47.5
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHh
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT 281 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~ 281 (355)
..+.+.+||++|.+.+..++..++..++++++|+|++++.+++.+..|+..+..
T Consensus 49 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~ 102 (172)
T 2erx_A 49 SICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICE 102 (172)
T ss_dssp EEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHH
T ss_pred EEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999888888788777755
No 377
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.68 E-value=0.00082 Score=62.64 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCChhHHHHHhhh
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~ 35 (355)
...|+++|.+||||||++..|..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999998874
No 378
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.67 E-value=0.0013 Score=52.74 Aligned_cols=48 Identities=48% Similarity=0.960 Sum_probs=41.8
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 275 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~ 275 (355)
..+.+.+||++|.+.+...+..++..++++++|+|+++..+++.+..|
T Consensus 62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 109 (179)
T 1z0f_A 62 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW 109 (179)
T ss_dssp EEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHH
T ss_pred eEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHH
Confidence 467889999999999999999999999999999999998777665444
No 379
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.66 E-value=0.002 Score=52.56 Aligned_cols=115 Identities=17% Similarity=0.277 Sum_probs=94.4
Q ss_pred eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC---CCceEEEEeeCCCCCCcccCC
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG---SDVIIMLVGNKTDLSDKRQVS 305 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~~~~v~ 305 (355)
.+.+.+||++|++.+...+..++..+|++++|+|+++..+++.+..|+..+..... .++|+++|+||+|+.+. ..
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~ 143 (190)
T 2h57_A 66 SLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VT 143 (190)
T ss_dssp SCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CC
T ss_pred CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CC
Confidence 46789999999999999999999999999999999999999999889888766533 48999999999999643 33
Q ss_pred HHHHHHHHh-----hcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 306 TEEGERKAK-----ELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 306 ~~~~~~~~~-----~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
..+...... ..+++++++||++|.||+++|++|.+.+.+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 188 (190)
T 2h57_A 144 SVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQTV 188 (190)
T ss_dssp HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC---
T ss_pred HHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHHh
Confidence 344444332 2467999999999999999999999998654
No 380
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=96.66 E-value=0.0021 Score=63.97 Aligned_cols=68 Identities=24% Similarity=0.247 Sum_probs=58.0
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCC
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS 299 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 299 (355)
+.+.+.++||||+..|.......+.-+|++++|+|+......+...-|..... .++|.+++.||.|..
T Consensus 83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~----~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK----YGVPRIVYVNKMDRQ 150 (709)
T ss_dssp CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH----HTCCEEEEEECSSST
T ss_pred CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH----cCCCeEEEEcccccc
Confidence 46889999999999999888888999999999999998888776555555554 389999999999974
No 381
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.66 E-value=0.00062 Score=54.89 Aligned_cols=51 Identities=25% Similarity=0.412 Sum_probs=41.5
Q ss_pred CCccEEEEEeecCCCC--cccceehhhhhhhhhcc-CeEEEEeeeeeccccceE
Q psy15725 180 GSDVIIMLVGNKTDLS--DKRQVSTEEGERKAKEL-NVMFIETSAKAGYNVKQV 230 (355)
Q Consensus 180 ~~~~piilv~nK~D~~--~~~~v~~~~~~~~~~~~-~~~~~~~sa~~~~~v~~i 230 (355)
..++|+++|+||+|+. ..+.+..++..+++... +.+++++|+.++.+++.+
T Consensus 106 ~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 159 (178)
T 2iwr_A 106 RGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRV 159 (178)
T ss_dssp SCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHH
T ss_pred CCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHH
Confidence 4689999999999994 45667777778887765 689999999999887754
No 382
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.61 E-value=0.00067 Score=56.74 Aligned_cols=51 Identities=45% Similarity=0.893 Sum_probs=45.0
Q ss_pred eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 279 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i 279 (355)
.+.+.+||++|++.+...+..++..++++++|||+++..+++.+..|+..+
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i 133 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQL 133 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTC
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 577899999999999999999999999999999999998888777776544
No 383
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.60 E-value=0.0018 Score=53.01 Aligned_cols=55 Identities=18% Similarity=0.276 Sum_probs=47.7
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHh
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT 281 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~ 281 (355)
...+.+.+||++|.+.+..++..++..++++++|||++++.+++.+..|+..+..
T Consensus 53 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 107 (199)
T 2gf0_A 53 KSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQ 107 (199)
T ss_dssp TEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHH
T ss_pred CEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 3466789999999999999999999999999999999999888887777776654
No 384
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.60 E-value=0.0019 Score=52.89 Aligned_cols=117 Identities=37% Similarity=0.708 Sum_probs=105.1
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE 307 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~ 307 (355)
..+.+.+||++|.+.+...+..++..++++++|+|+++..+++.+..|+..+......++|+++|+||+|+.+.+.+..+
T Consensus 73 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~ 152 (192)
T 2il1_A 73 KKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQ 152 (192)
T ss_dssp EEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHH
T ss_pred eEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHH
Confidence 45788999999999999999999999999999999999999999999998887776578999999999999877778888
Q ss_pred HHHHHHhhc-CcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725 308 EGERKAKEL-NVMFIETSAKAGYNVKQLFRRVAAALPG 344 (355)
Q Consensus 308 ~~~~~~~~~-~~~~~~~SA~~~~gv~~l~~~l~~~i~~ 344 (355)
+...+++.. +++++++||++|.||+++|++|.+.+.+
T Consensus 153 ~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 153 QGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp HHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 888888774 7899999999999999999999988753
No 385
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.58 E-value=0.0011 Score=54.54 Aligned_cols=117 Identities=39% Similarity=0.627 Sum_probs=102.9
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCC------Cc
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS------DK 301 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~------~~ 301 (355)
..+.+.+||++|.+.+...+..++..+|++++|||+++..+++.+..|+..+......++|+++|+||+|+. ..
T Consensus 75 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~ 154 (199)
T 2p5s_A 75 ERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQ 154 (199)
T ss_dssp EEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTC
T ss_pred EEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccc
Confidence 457789999999999999999999999999999999999999999999998877655689999999999985 34
Q ss_pred ccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725 302 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344 (355)
Q Consensus 302 ~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~ 344 (355)
+.+..+++..+++..+++++++||++|.||+++|++|.+.+.+
T Consensus 155 ~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 155 KCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp CCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred cccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 6677888888888889999999999999999999999998864
No 386
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.53 E-value=0.0013 Score=53.51 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChhHHHHHhhhc
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYD 36 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~ 36 (355)
--++++|++|||||||++.+.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999873
No 387
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.52 E-value=0.0018 Score=53.22 Aligned_cols=114 Identities=19% Similarity=0.259 Sum_probs=91.9
Q ss_pred ceEEEEEEeCCCcccccccc---cccccCCcEEEEEEeCCCc--ccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCC--
Q psy15725 228 KQVRLQLWDTAGQERFRSLI---PSYIRDSTVAVVVYDITNA--NSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD-- 300 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~---~~~~~~~~~vi~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-- 300 (355)
..+.+.+||++|++.|.... ..++.+++++++|||+++. .+++.+..|+..+.... .++|+++|+||+|+.+
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~ 145 (196)
T 3llu_A 67 SFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDD 145 (196)
T ss_dssp TSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHH
T ss_pred CeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchh
Confidence 34678999999999987765 7999999999999999987 45555666776664333 6899999999999864
Q ss_pred -----cccCCHHHHHHHHh----hcCcEEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725 301 -----KRQVSTEEGERKAK----ELNVMFIETSAKAGYNVKQLFRRVAAALP 343 (355)
Q Consensus 301 -----~~~v~~~~~~~~~~----~~~~~~~~~SA~~~~gv~~l~~~l~~~i~ 343 (355)
.+.+.......+++ ..++++++|||++ .||+++|+.|++.+.
T Consensus 146 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~li 196 (196)
T 3llu_A 146 HKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKLI 196 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHTC
T ss_pred hhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHhC
Confidence 23455555666676 6678999999999 999999999998763
No 388
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.51 E-value=0.0014 Score=54.10 Aligned_cols=26 Identities=19% Similarity=0.446 Sum_probs=22.1
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhc
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYD 36 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~ 36 (355)
.+.--|+++|++|||||||+++|...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 34457899999999999999999873
No 389
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.48 E-value=0.0043 Score=49.45 Aligned_cols=52 Identities=23% Similarity=0.268 Sum_probs=39.3
Q ss_pred ceEEEEEEeCCCccc--ccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725 228 KQVRLQLWDTAGQER--FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 279 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~--~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i 279 (355)
..+.+.+||++|.+. +..++..++..++++++|||++++.+++.+..|+..+
T Consensus 50 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l 103 (175)
T 2nzj_A 50 EDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQL 103 (175)
T ss_dssp EEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred EEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 456788999999887 5566778889999999999999999988877776654
No 390
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.48 E-value=0.0013 Score=54.50 Aligned_cols=21 Identities=24% Similarity=0.566 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHhhh
Q psy15725 15 KLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~ 35 (355)
.++++|++|+|||||++.+.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999887
No 391
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.46 E-value=0.0033 Score=51.54 Aligned_cols=52 Identities=31% Similarity=0.340 Sum_probs=43.9
Q ss_pred cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 279 (355)
Q Consensus 227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i 279 (355)
...+.+.+||++|.+. ...+..++..++++++|||++++.+++.+..|+..+
T Consensus 73 ~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i 124 (196)
T 2atv_A 73 DEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNIL 124 (196)
T ss_dssp TEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred CEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 3467889999999888 677888899999999999999998888877776554
No 392
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=96.46 E-value=0.0037 Score=59.44 Aligned_cols=122 Identities=20% Similarity=0.363 Sum_probs=94.1
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC-CCceEEEEeeCCCCCCcccCCH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDKRQVST 306 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~v~~ 306 (355)
..+.+.+|||+|++.+..++..++..+|++++|||+++..+++.+..|+..+..... .++|+++|+||+|+.+.. ..
T Consensus 364 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~ 441 (497)
T 3lvq_E 364 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KP 441 (497)
T ss_dssp SSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC--CH
T ss_pred CCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC--CH
Confidence 456789999999999999999999999999999999999999999988888765432 689999999999996432 22
Q ss_pred HHHHHH-----HhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCCCCCCC
Q psy15725 307 EEGERK-----AKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTENK 351 (355)
Q Consensus 307 ~~~~~~-----~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~~~~ 351 (355)
.+.... ....++++++|||++|.||+++|++|.+.+.+...+...
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~~~~~~~~ 491 (497)
T 3lvq_E 442 HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSKLAAALE 491 (497)
T ss_dssp HHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC--------
T ss_pred HHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCCc
Confidence 222221 122456899999999999999999999999877665543
No 393
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.43 E-value=0.0029 Score=52.78 Aligned_cols=50 Identities=26% Similarity=0.624 Sum_probs=44.0
Q ss_pred eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHH
Q psy15725 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 278 (355)
Q Consensus 229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~ 278 (355)
.+.+.+||++|.+.+..++..++..+|++++|+|+++..+++.+..|+..
T Consensus 60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~ 109 (218)
T 4djt_A 60 VIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKE 109 (218)
T ss_dssp EEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHH
T ss_pred EEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHH
Confidence 37789999999999999999999999999999999999888777666544
No 394
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.31 E-value=0.0037 Score=50.67 Aligned_cols=145 Identities=23% Similarity=0.311 Sum_probs=101.4
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 93 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 93 (355)
+||+++|++|||||||+++|.+..+...+. |++.... ..+... .+.+||||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-----------------------~~~t~~~--~~~~~~----~~~l~Dt~ 52 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKR-----------------------PGVTRKI--IEIEWK----NHKIIDMP 52 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSS-----------------------TTCTTSC--EEEEET----TEEEEECC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCC-----------------------CCcccee--EEEecC----CEEEEECC
Confidence 689999999999999999999865443322 2222111 111122 58899999
Q ss_pred C-----------cccccccccccccC-ccEEEEEEECCCcchhhhH-HHHHHH--------HhhhcCCceEEeecccccc
Q psy15725 94 G-----------QERFRSLIPSYIRD-STVAVVVYDITNANSFHQT-SKWIDD--------VRTERGSDVIIMLVGSIET 152 (355)
Q Consensus 94 g-----------~~~~~~~~~~~~~~-~d~ii~v~d~~~~~s~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~ 152 (355)
| ++.+...+..+++. ++++++||++.+..++..+ ..|... +...
T Consensus 53 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~--------------- 117 (190)
T 2cxx_A 53 GFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQF--------------- 117 (190)
T ss_dssp CBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHH---------------
T ss_pred CccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHH---------------
Confidence 9 66777777778887 8888888888888888776 667653 1110
Q ss_pred ccccccccccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCe-------EEEEeeeeecc
Q psy15725 153 NFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-------MFIETSAKAGY 225 (355)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~-------~~~~~sa~~~~ 225 (355)
....++|+++|+||+|+...+ ..+..+++...+. +++++|+.++.
T Consensus 118 -------------------------~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 169 (190)
T 2cxx_A 118 -------------------------LRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGD 169 (190)
T ss_dssp -------------------------HHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCT
T ss_pred -------------------------HHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCC
Confidence 112379999999999987644 3445566666654 47999999998
Q ss_pred ccceE
Q psy15725 226 NVKQV 230 (355)
Q Consensus 226 ~v~~i 230 (355)
+++++
T Consensus 170 ~v~~l 174 (190)
T 2cxx_A 170 NIERL 174 (190)
T ss_dssp THHHH
T ss_pred CHHHH
Confidence 87754
No 395
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.31 E-value=0.0022 Score=52.38 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChhHHHHHhhh
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~ 35 (355)
-.|+++|++|||||||++.+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999999877
No 396
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.31 E-value=0.0042 Score=55.01 Aligned_cols=85 Identities=16% Similarity=0.182 Sum_probs=54.1
Q ss_pred ccccccccCccEEEEEEECCCcchh-hhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccccccccc
Q psy15725 100 SLIPSYIRDSTVAVVVYDITNANSF-HQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTE 178 (355)
Q Consensus 100 ~~~~~~~~~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (355)
.+....+.++|.+++|+|+.++..- ..+..++.....
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~------------------------------------------ 115 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA------------------------------------------ 115 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT------------------------------------------
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH------------------------------------------
Confidence 3444568899999999999976543 445555544332
Q ss_pred CCCccEEEEEeecCCCCcccce--ehhhhhhhhhccCeEEEEeeeeeccccc
Q psy15725 179 RGSDVIIMLVGNKTDLSDKRQV--STEEGERKAKELNVMFIETSAKAGYNVK 228 (355)
Q Consensus 179 ~~~~~piilv~nK~D~~~~~~v--~~~~~~~~~~~~~~~~~~~sa~~~~~v~ 228 (355)
.++|.++|.||+|+.++... ............+.+++.+|+..+.+++
T Consensus 116 --~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~ 165 (307)
T 1t9h_A 116 --NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLA 165 (307)
T ss_dssp --TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCT
T ss_pred --CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHH
Confidence 37899999999999764320 0111222223446678888887776544
No 397
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=96.28 E-value=0.0032 Score=56.49 Aligned_cols=116 Identities=19% Similarity=0.336 Sum_probs=88.9
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcccCCH
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVST 306 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~ 306 (355)
..+.+.+|||+|++.+..++..++..+|++++|||+++..++..+..|+..+.... ..++|+++|+||+|+.+... .
T Consensus 207 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~ 284 (329)
T 3o47_A 207 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--A 284 (329)
T ss_dssp TTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--H
T ss_pred CcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--H
Confidence 45678999999999999999999999999999999999999999888877765433 25899999999999964432 2
Q ss_pred HHHH-HH----HhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 307 EEGE-RK----AKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 307 ~~~~-~~----~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
.+.. .+ ++..+++++++||++|.||+++|++|.+.+.+.
T Consensus 285 ~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 285 AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp HHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC-
T ss_pred HHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHhc
Confidence 2222 22 223457899999999999999999999998754
No 398
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=96.27 E-value=0.0027 Score=56.63 Aligned_cols=113 Identities=18% Similarity=0.183 Sum_probs=89.6
Q ss_pred EEEEEEeCCCcccccc---cccccccCCcEEEEEEeCCCcccHHHHH---HHHHHHHhhcCCCceEEEEeeCCCCCCc--
Q psy15725 230 VRLQLWDTAGQERFRS---LIPSYIRDSTVAVVVYDITNANSFHQTS---KWIDDVRTERGSDVIIMLVGNKTDLSDK-- 301 (355)
Q Consensus 230 i~~~i~D~~g~~~~~~---~~~~~~~~~~~vi~v~d~~~~~s~~~~~---~~~~~i~~~~~~~~piilv~nK~Dl~~~-- 301 (355)
+.+.||||+|++.|+. .++.++++++++|+|||+++. ..+... +|+..+.... .++|+++++||+|+.++
T Consensus 46 v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~ 123 (331)
T 3r7w_B 46 IDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDF 123 (331)
T ss_dssp SCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHH
T ss_pred EEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhh
Confidence 6789999999999975 368899999999999999987 333333 3344444333 68999999999999754
Q ss_pred -----ccCCHHHHHHHHhh----cCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725 302 -----RQVSTEEGERKAKE----LNVMFIETSAKAGYNVKQLFRRVAAALPGM 345 (355)
Q Consensus 302 -----~~v~~~~~~~~~~~----~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~ 345 (355)
+.+..+++.++++. .++++++|||++ .||+++|..|++.+.+.
T Consensus 124 R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 124 KVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp HHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSSTT
T ss_pred hhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHhh
Confidence 35666777777775 678999999997 59999999999988754
No 399
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.25 E-value=0.002 Score=52.61 Aligned_cols=21 Identities=24% Similarity=0.608 Sum_probs=19.3
Q ss_pred EEEEcCCCCChhHHHHHhhhc
Q psy15725 16 LVFLGEQSVGKTSLITRFMYD 36 (355)
Q Consensus 16 I~vvG~~~vGKStLl~~l~~~ 36 (355)
++++|++|+|||||++.+.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999873
No 400
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.25 E-value=0.002 Score=54.23 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHhhhc
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYD 36 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~ 36 (355)
-++++|++|||||||++.+.+.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999884
No 401
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.24 E-value=0.0021 Score=53.19 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHhhhc
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYD 36 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~ 36 (355)
-|+++|++|||||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999998874
No 402
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.24 E-value=0.0006 Score=54.47 Aligned_cols=146 Identities=14% Similarity=0.238 Sum_probs=102.9
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 91 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 91 (355)
+.++|+++|++|||||||+++|.+..+...+ .|+.+.+.....+.+++ ..+.+||
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~-----------------------~~~~t~~~~~~~~~~~~--~~l~i~D 56 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGN-----------------------WPGVTVEKKEGEFEYNG--EKFKVVD 56 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC----------------------------CCCCCEEEEEETT--EEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccC-----------------------CCCcceeeeEEEEEECC--cEEEEEE
Confidence 4589999999999999999999985432211 12222233333333333 5799999
Q ss_pred cCCcccccc------ccccccc--CccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccC
Q psy15725 92 TAGQERFRS------LIPSYIR--DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHAN 163 (355)
Q Consensus 92 ~~g~~~~~~------~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (355)
|||+..+.. +...+++ .+|++++|+|+++.+ ....|+.++..
T Consensus 57 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~---~~~~~~~~~~~--------------------------- 106 (165)
T 2wji_A 57 LPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALE---RNLYLTLQLME--------------------------- 106 (165)
T ss_dssp CCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHH---HHHHHHHHHHH---------------------------
T ss_pred CCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchh---HhHHHHHHHHh---------------------------
Confidence 999988753 3355554 899999999998843 34456666543
Q ss_pred ccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceE
Q psy15725 164 SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230 (355)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i 230 (355)
.++|+++|+||+|+...+.+.. +..+++...+.+++++|+.++.+++++
T Consensus 107 -----------------~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l 155 (165)
T 2wji_A 107 -----------------MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIEEL 155 (165)
T ss_dssp -----------------TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHHHH
T ss_pred -----------------cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHHHH
Confidence 2689999999999865544443 356677777889999999999888754
No 403
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.23 E-value=0.0016 Score=52.85 Aligned_cols=119 Identities=19% Similarity=0.393 Sum_probs=95.8
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCc-ccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCC-
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA-NSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVS- 305 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~- 305 (355)
..+.+.+||++|++.+..+++.++.+++++++|+|++++ .+++.+..|+..+.... .+.|+++|+||+|+.+.+.+.
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~ 132 (184)
T 2zej_A 54 RDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKA 132 (184)
T ss_dssp --CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHH
T ss_pred CceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHH
Confidence 356788999999999999999999999999999999987 47888899999887654 589999999999987554332
Q ss_pred --HHHHHHHHhhcCcE----EEEecCCCCC-CHHHHHHHHHHHcCCCCC
Q psy15725 306 --TEEGERKAKELNVM----FIETSAKAGY-NVKQLFRRVAAALPGMDS 347 (355)
Q Consensus 306 --~~~~~~~~~~~~~~----~~~~SA~~~~-gv~~l~~~l~~~i~~~~~ 347 (355)
......+++..+++ ++++||++|. |++++++.|.+.+++.+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~~ 181 (184)
T 2zej_A 133 CMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNFKI 181 (184)
T ss_dssp HHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhcccc
Confidence 23344556566765 9999999997 999999999999887544
No 404
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.21 E-value=0.0021 Score=51.78 Aligned_cols=21 Identities=19% Similarity=0.485 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhHHHHHhhh
Q psy15725 15 KLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~ 35 (355)
-++++|++|+|||||++.+..
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 489999999999999998654
No 405
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.20 E-value=0.0023 Score=53.30 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHHHhhh
Q psy15725 15 KLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~ 35 (355)
-++++|++|+|||||++.+.+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999887
No 406
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.19 E-value=0.0024 Score=52.25 Aligned_cols=21 Identities=24% Similarity=0.608 Sum_probs=19.5
Q ss_pred EEEEcCCCCChhHHHHHhhhc
Q psy15725 16 LVFLGEQSVGKTSLITRFMYD 36 (355)
Q Consensus 16 I~vvG~~~vGKStLl~~l~~~ 36 (355)
|+++|++|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999873
No 407
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.18 E-value=0.0023 Score=53.75 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHhhhc
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYD 36 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~ 36 (355)
.++++|++|+|||||++.+.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999998873
No 408
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.16 E-value=0.0028 Score=52.76 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhh
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~ 35 (355)
+...|+|+|++|+|||||++.+.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998877
No 409
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=96.08 E-value=0.0015 Score=64.10 Aligned_cols=117 Identities=12% Similarity=0.105 Sum_probs=86.3
Q ss_pred ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccC---
Q psy15725 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV--- 304 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v--- 304 (355)
+...+.++||||+..|.......+.-+|++++|+|.......+...-|..... .++|.+++.||.|....+..
T Consensus 65 ~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~ 140 (638)
T 3j25_A 65 ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK----MGIPTIFFINKIDQNGIDLSTVY 140 (638)
T ss_dssp SSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHH----HTCSCEECCEECCSSSCCSHHHH
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH----cCCCeEEEEeccccccCCHHHHH
Confidence 45667899999999999888888899999999999998877666544544443 37999999999997432100
Q ss_pred -----------------------------CHHH------------------------------HHHHHhhcCcEEEEecC
Q psy15725 305 -----------------------------STEE------------------------------GERKAKELNVMFIETSA 325 (355)
Q Consensus 305 -----------------------------~~~~------------------------------~~~~~~~~~~~~~~~SA 325 (355)
..+. ...+......|+++.||
T Consensus 141 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa 220 (638)
T 3j25_A 141 QDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSA 220 (638)
T ss_dssp HHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCS
T ss_pred HHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhccccccccccccc
Confidence 0000 00011122358999999
Q ss_pred CCCCCHHHHHHHHHHHcCCCCCC
Q psy15725 326 KAGYNVKQLFRRVAAALPGMDST 348 (355)
Q Consensus 326 ~~~~gv~~l~~~l~~~i~~~~~~ 348 (355)
++|.||+++++.|.+.+|.+...
T Consensus 221 ~~~~Gv~~LLd~i~~~~p~p~~~ 243 (638)
T 3j25_A 221 KSNIGIDNLIEVITNKFYSSTHR 243 (638)
T ss_dssp TTCCSHHHHHHHHHHSCCCSGGG
T ss_pred ccCCCchhHhhhhhccccCcccc
Confidence 99999999999999999987543
No 410
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.08 E-value=0.0028 Score=52.83 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHhhhc
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYD 36 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~ 36 (355)
-|+++|++|||||||++.|...
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999874
No 411
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.96 E-value=0.0034 Score=52.04 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChhHHHHHhhh
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~ 35 (355)
.-|+++|++|||||||+++|..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999876
No 412
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.92 E-value=0.0059 Score=50.60 Aligned_cols=28 Identities=21% Similarity=0.263 Sum_probs=23.2
Q ss_pred CCCcceeEEEEEcCCCCChhHHHHHhhh
Q psy15725 8 GNPLRKFKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 8 ~~~~~~~~I~vvG~~~vGKStLl~~l~~ 35 (355)
+...+...|+++|.+|+|||||++.|..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444557899999999999999998876
No 413
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.91 E-value=0.0044 Score=51.16 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=22.9
Q ss_pred CCcceeEEEEEcCCCCChhHHHHHhhh
Q psy15725 9 NPLRKFKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 9 ~~~~~~~I~vvG~~~vGKStLl~~l~~ 35 (355)
.+...+.|+++|.+||||||+.+.|..
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345567899999999999999998865
No 414
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.91 E-value=0.0039 Score=49.86 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCChhHHHHHh
Q psy15725 14 FKLVFLGEQSVGKTSLITRF 33 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l 33 (355)
+-|+++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 415
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.90 E-value=0.0038 Score=50.04 Aligned_cols=21 Identities=14% Similarity=0.400 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHhhh
Q psy15725 15 KLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~ 35 (355)
.|+++|++|||||||++.|..
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998876
No 416
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.89 E-value=0.0037 Score=53.18 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhHHHHHhhh
Q psy15725 15 KLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~ 35 (355)
.++++|+.|+|||||++.+.+
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 489999999999999998877
No 417
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.87 E-value=0.0035 Score=51.84 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChhHHHHHhhh
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~ 35 (355)
..|+++|.+|||||||.+.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998876
No 418
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.86 E-value=0.004 Score=51.49 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChhHHHHHhhhcC
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYDS 37 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~~ 37 (355)
..|+++|++|||||||++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 469999999999999999987743
No 419
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.84 E-value=0.0043 Score=51.82 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChhHHHHHhhh
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~ 35 (355)
++|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 420
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.83 E-value=0.016 Score=47.28 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=40.2
Q ss_pred ceEEEEEEeCCCccc-ccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725 228 KQVRLQLWDTAGQER-FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 279 (355)
Q Consensus 228 ~~i~~~i~D~~g~~~-~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i 279 (355)
..+.+.+||+.|.+. ++.++..++..++++++|||+++..+++.+..|...+
T Consensus 54 ~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l 106 (192)
T 2cjw_A 54 ESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQL 106 (192)
T ss_dssp EEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 456778999999766 5567778889999999999999999998877665543
No 421
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.83 E-value=0.0037 Score=51.25 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHhhh
Q psy15725 15 KLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~ 35 (355)
.++++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 489999999999999999887
No 422
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.83 E-value=0.0045 Score=49.16 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHhhhcC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDS 37 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~ 37 (355)
.++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999988843
No 423
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.82 E-value=0.0041 Score=52.51 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhHHHHHhhh
Q psy15725 15 KLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~ 35 (355)
.++++|+.|+|||||++.+.+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998877
No 424
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.82 E-value=0.0047 Score=49.31 Aligned_cols=21 Identities=10% Similarity=0.222 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHhhh
Q psy15725 15 KLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~ 35 (355)
.|++.|.+||||||+.++|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 425
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.82 E-value=0.0051 Score=51.13 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCChhHHHHHhhh
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~ 35 (355)
...|+++|+.|||||||++.+.+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998877
No 426
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.81 E-value=0.0044 Score=51.73 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChhHHHHHhhh
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~ 35 (355)
++|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 427
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.78 E-value=0.0046 Score=50.44 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhHHHHHhhh
Q psy15725 15 KLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~ 35 (355)
-++++|++|+|||||++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999875
No 428
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.78 E-value=0.0046 Score=49.79 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChhHHHHHhhh
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~ 35 (355)
..|+++|.+||||||+.++|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999876
No 429
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.76 E-value=0.0051 Score=51.18 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChhHHHHHhhh
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~ 35 (355)
++|+++|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 430
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.75 E-value=0.0047 Score=51.01 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChhHHHHHhhh
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~ 35 (355)
-.|+++|++|||||||++.+.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998876
No 431
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.74 E-value=0.005 Score=52.64 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChhHHHHHhh
Q psy15725 14 FKLVFLGEQSVGKTSLITRFM 34 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~ 34 (355)
..|+++|++|||||||++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999988
No 432
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.74 E-value=0.0049 Score=49.76 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHHHhhh
Q psy15725 15 KLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~ 35 (355)
-++++|++|+|||||++++..
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 433
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.72 E-value=0.0049 Score=52.60 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHhhhc
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYD 36 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~ 36 (355)
.++++|+.|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988873
No 434
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.68 E-value=0.0055 Score=50.62 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChhHHHHHhhh
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~ 35 (355)
++|+++|.+||||||+++.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999998876
No 435
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.68 E-value=0.0056 Score=52.14 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHhhh
Q psy15725 15 KLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~ 35 (355)
.++++|+.|+|||||++.+.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999998877
No 436
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.67 E-value=0.0053 Score=51.42 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhHHHHHhhh
Q psy15725 15 KLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~ 35 (355)
.++++|+.|+|||||++.+.+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999998877
No 437
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.66 E-value=0.005 Score=51.30 Aligned_cols=21 Identities=29% Similarity=0.180 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHhhh
Q psy15725 15 KLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~ 35 (355)
.++++|+.|+|||||++.+.+
T Consensus 24 ~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999887
No 438
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.65 E-value=0.0056 Score=54.10 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHhhh
Q psy15725 15 KLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~ 35 (355)
.++|+|++|+|||||++.+.+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 689999999999999999887
No 439
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.64 E-value=0.0059 Score=50.26 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHhhh
Q psy15725 15 KLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~ 35 (355)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 699999999999999998876
No 440
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.63 E-value=0.0054 Score=53.11 Aligned_cols=21 Identities=14% Similarity=0.468 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhHHHHHhhh
Q psy15725 15 KLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~ 35 (355)
-++++|+.|+|||||++.+.+
T Consensus 34 ~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998877
No 441
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.62 E-value=0.023 Score=46.69 Aligned_cols=48 Identities=10% Similarity=0.103 Sum_probs=33.8
Q ss_pred EEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725 85 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT 136 (355)
Q Consensus 85 ~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~ 136 (355)
..+.++|+|+.. .......+..+|.+++++..+... .....+++.++.
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~ 123 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLE 123 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHT
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHH
Confidence 457899999864 334445677899999999886654 566666666654
No 442
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.61 E-value=0.0083 Score=48.16 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChhHHHHHhhh
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~ 35 (355)
..|+++|++|||||||++.+..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999998866
No 443
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.61 E-value=0.0055 Score=52.99 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChhHHHHHhhhc
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMYD 36 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~~ 36 (355)
=.++++|+.|||||||++.+.+.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 36899999999999999998873
No 444
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.60 E-value=0.0056 Score=53.38 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhHHHHHhhh
Q psy15725 15 KLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~ 35 (355)
.++++|+.|+|||||++.+.+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998877
No 445
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.60 E-value=0.0062 Score=52.08 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHhhhc
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYD 36 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~ 36 (355)
.++++|+.|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988873
No 446
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.58 E-value=0.0058 Score=52.76 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHhhh
Q psy15725 15 KLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~ 35 (355)
.++++|+.|+|||||++-+.+
T Consensus 35 ~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 488999999999999998877
No 447
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.57 E-value=0.0064 Score=52.12 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHhhhc
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYD 36 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~ 36 (355)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988773
No 448
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.57 E-value=0.0071 Score=49.22 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHhhh
Q psy15725 15 KLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~ 35 (355)
.|++.|.+||||||+.++|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999876
No 449
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.56 E-value=0.0057 Score=53.07 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHhhhc
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYD 36 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~ 36 (355)
.++++|+.|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999988873
No 450
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.56 E-value=0.0058 Score=49.42 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChhHHHHHhhh
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~ 35 (355)
-.++++|++|+|||||++.+.+
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999877
No 451
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.55 E-value=0.0066 Score=51.39 Aligned_cols=21 Identities=38% Similarity=0.453 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhHHHHHhhh
Q psy15725 15 KLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~ 35 (355)
.++++|+.|+|||||++.+.+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999998877
No 452
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.54 E-value=0.0068 Score=49.30 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChhHHHHHhhh
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~ 35 (355)
..|++.|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998866
No 453
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.54 E-value=0.0036 Score=50.41 Aligned_cols=21 Identities=48% Similarity=0.662 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHHHhhh
Q psy15725 15 KLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~ 35 (355)
.++|+|++|+|||||++.+.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999887
No 454
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.52 E-value=0.007 Score=49.88 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChhHHHHHhhh
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~ 35 (355)
-.|+++|++||||||+...|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999998876
No 455
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.52 E-value=0.0063 Score=51.91 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhHHHHHhhh
Q psy15725 15 KLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~ 35 (355)
.++++|+.|+|||||++-+.+
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999998877
No 456
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.52 E-value=0.0063 Score=52.23 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhHHHHHhhh
Q psy15725 15 KLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~ 35 (355)
.++++|+.|+|||||++.+.+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 479999999999999998877
No 457
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.52 E-value=0.0062 Score=52.70 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhHHHHHhhh
Q psy15725 15 KLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~ 35 (355)
.++++|+.|+|||||++-+.+
T Consensus 52 i~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEcCCCCcHHHHHHHHHc
Confidence 478999999999999998877
No 458
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.51 E-value=0.0069 Score=50.89 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChhHHHHHhhh
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~ 35 (355)
..|+++|++||||||+++.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998876
No 459
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.50 E-value=0.007 Score=50.48 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChhHHHHHhhh
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~ 35 (355)
++|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998866
No 460
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.49 E-value=0.0067 Score=52.09 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHhhh
Q psy15725 15 KLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~ 35 (355)
.++++|+.|+|||||++-+.+
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999887
No 461
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.46 E-value=0.0073 Score=52.18 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHhhhc
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYD 36 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~ 36 (355)
.++++|+.|+|||||++.+.+.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999998873
No 462
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.45 E-value=0.0099 Score=49.27 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCChhHHHHHhhh
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~ 35 (355)
...|++.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998875
No 463
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.44 E-value=0.0069 Score=52.20 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHhhh
Q psy15725 15 KLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~ 35 (355)
.++++|+.|+|||||++-+.+
T Consensus 43 i~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999998887
No 464
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.42 E-value=0.0075 Score=49.76 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCChhHHHHHhhh
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~ 35 (355)
...|+++|++|+|||||.+.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998876
No 465
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.41 E-value=0.0054 Score=51.87 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=14.9
Q ss_pred EEEEEcCCCCChhHHHHHhh-h
Q psy15725 15 KLVFLGEQSVGKTSLITRFM-Y 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~-~ 35 (355)
-|+++|++|||||||++.|. +
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp EEEEECSCC----CHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 58999999999999999988 6
No 466
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.41 E-value=0.0072 Score=52.58 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHHHhhhc
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYD 36 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~ 36 (355)
.++++|+.|+|||||++-+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988773
No 467
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.41 E-value=0.0094 Score=48.29 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChhHHHHHhhh
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~ 35 (355)
..|+++|.+||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 468
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.39 E-value=0.0074 Score=50.68 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHhhhc
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYD 36 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~ 36 (355)
-++++|++|+|||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 469
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.39 E-value=0.0078 Score=54.44 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=22.5
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhhc
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMYD 36 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~~ 36 (355)
....|+++|++|||||||+|+|++.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999973
No 470
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.38 E-value=0.0076 Score=52.31 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHhhh
Q psy15725 15 KLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~ 35 (355)
.++++|+.|+|||||++-+.+
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 488999999999999999887
No 471
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.38 E-value=0.0076 Score=48.48 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChhHHHHHhhh
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~ 35 (355)
..|++.|.+||||||+.++|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999876
No 472
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.35 E-value=0.0076 Score=51.87 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHHHhhhc
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYD 36 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~ 36 (355)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988873
No 473
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.35 E-value=0.0075 Score=53.60 Aligned_cols=25 Identities=20% Similarity=0.208 Sum_probs=21.9
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhh
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~ 35 (355)
.+..-|+|+|++|||||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3456899999999999999998877
No 474
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.34 E-value=0.0084 Score=52.39 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHhhhc
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYD 36 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~ 36 (355)
.++++|+.|+|||||++-+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4799999999999999988773
No 475
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.34 E-value=0.0094 Score=48.54 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChhHHHHHhhh
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~ 35 (355)
..|+++|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 476
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.33 E-value=0.013 Score=48.31 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhh
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~ 35 (355)
....|++.|.+||||||+.++|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999875
No 477
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.33 E-value=0.0098 Score=49.19 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChhHHHHHhhh
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~ 35 (355)
+.|+++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 478
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.32 E-value=0.0096 Score=50.84 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhh
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~ 35 (355)
+.++|++.|++||||||+.++|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999875
No 479
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.32 E-value=0.008 Score=52.13 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhHHHHHhhh
Q psy15725 15 KLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~ 35 (355)
.++++|+.|+|||||++-+.+
T Consensus 35 ~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 478999999999999998877
No 480
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.30 E-value=0.01 Score=48.38 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChhHHHHHhhh
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~ 35 (355)
...|++.|.+||||||+.++|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 481
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.29 E-value=0.0082 Score=51.10 Aligned_cols=21 Identities=29% Similarity=0.714 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhHHHHHhhh
Q psy15725 15 KLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~ 35 (355)
-++++|++|+|||||++.+..
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 589999999999999998883
No 482
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.28 E-value=0.01 Score=48.18 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCChhHHHHHhhh
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~ 35 (355)
..+|+++|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998876
No 483
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.27 E-value=0.0041 Score=52.46 Aligned_cols=154 Identities=17% Similarity=0.179 Sum_probs=100.8
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~ 90 (355)
...++|+++|++|||||||+++|++..+.... .+....+........ ....+.+|
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~-----------------------~~~~t~~~~~~~~~~--~~~~~~l~ 81 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQS-----------------------YSFTTKNLYVGHFDH--KLNKYQII 81 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEEC-----------------------C-----CEEEEEEEE--TTEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCC-----------------------CCCcceeeeeeeeec--CCCeEEEE
Confidence 35699999999999999999999985532110 011111111112222 23679999
Q ss_pred ecCCccccc---------ccccccccCccEEEEEEECCCcchhhh--HHHHHHHHhhhcCCceEEeeccccccccccccc
Q psy15725 91 DTAGQERFR---------SLIPSYIRDSTVAVVVYDITNANSFHQ--TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSF 159 (355)
Q Consensus 91 D~~g~~~~~---------~~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
||||+.... ..+..++..+|++++|||++++.+|+. ...|+..+..
T Consensus 82 DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~----------------------- 138 (228)
T 2qu8_A 82 DTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKS----------------------- 138 (228)
T ss_dssp ECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHT-----------------------
T ss_pred ECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHH-----------------------
Confidence 999983211 112234678899999999999988862 2345555532
Q ss_pred cccCccccCccccccccccCCCccEEEEEeecCCCCcccceehh---hhhhhhhccC--eEEEEeeeeeccccceEE
Q psy15725 160 HHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE---EGERKAKELN--VMFIETSAKAGYNVKQVR 231 (355)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~---~~~~~~~~~~--~~~~~~sa~~~~~v~~i~ 231 (355)
...++|+++|+||+|+.+.+.+... ....++...+ .+++++|+.++.+++.++
T Consensus 139 -------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 196 (228)
T 2qu8_A 139 -------------------VFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAK 196 (228)
T ss_dssp -------------------CC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHH
T ss_pred -------------------hhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHH
Confidence 1247999999999999776655443 3445556666 899999999998887643
No 484
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.27 E-value=0.0092 Score=47.47 Aligned_cols=22 Identities=14% Similarity=0.301 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChhHHHHHhhh
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~ 35 (355)
++|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998866
No 485
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.26 E-value=0.011 Score=48.94 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChhHHHHHhhh
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~ 35 (355)
..|++.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 6799999999999999999876
No 486
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.23 E-value=0.048 Score=50.65 Aligned_cols=81 Identities=19% Similarity=0.247 Sum_probs=42.7
Q ss_pred ceeEEEEEcCCCCChhHHHHHhhh---cCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeee---ecCcEE
Q psy15725 12 RKFKLVFLGEQSVGKTSLITRFMY---DSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY---LEDRTV 85 (355)
Q Consensus 12 ~~~~I~vvG~~~vGKStLl~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~ 85 (355)
+-.=|+|+|..++|||+|+|.|+. .. .+.... .+.......|..+ .....-|.|+-.+...+. .++...
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~-~~~~w~--~~~~~~~~gF~~~--~~~~~~TkGIWmw~~p~~~~~~~g~~~ 140 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQ-ESVDWV--GDYNEPLTGFSWR--GGSERETTGIQIWSEIFLINKPDGKKV 140 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCT-TCTTTT--CCTTCCCCSSCCC--CSSSCCCCSEEEESSCEEEECTTSCEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcc-cccccc--cccccCCCCceeC--CCCCCcCceEEEecCcccccCCCCCee
Confidence 556678999999999999996653 11 000000 0000000011111 122233556555544332 256678
Q ss_pred EEEEEecCCccc
Q psy15725 86 RLQLWDTAGQER 97 (355)
Q Consensus 86 ~~~i~D~~g~~~ 97 (355)
.+.++||.|...
T Consensus 141 ~vlllDTEG~~d 152 (457)
T 4ido_A 141 AVLLMDTQGTFD 152 (457)
T ss_dssp EEEEEEECCBTC
T ss_pred EEEEEeccCCCC
Confidence 999999999643
No 487
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.23 E-value=0.0083 Score=47.08 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChhHHHHHhhh
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~ 35 (355)
-.++++|++|+|||+|++.+.+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999887
No 488
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.21 E-value=0.01 Score=48.09 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChhHHHHHhhh
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~ 35 (355)
..|+++|.+||||||+.++|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999865
No 489
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.19 E-value=0.013 Score=51.53 Aligned_cols=25 Identities=20% Similarity=0.208 Sum_probs=21.8
Q ss_pred cceeEEEEEcCCCCChhHHHHHhhh
Q psy15725 11 LRKFKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 11 ~~~~~I~vvG~~~vGKStLl~~l~~ 35 (355)
.+...|+|+|++|||||||++.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999988876
No 490
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.19 E-value=0.01 Score=51.38 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHhhhcC
Q psy15725 15 KLVFLGEQSVGKTSLITRFMYDS 37 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~~~ 37 (355)
.++++|+.|+|||||++-+.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999888743
No 491
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.18 E-value=0.015 Score=47.17 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChhHHHHHhhh
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~ 35 (355)
..|++.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 492
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.16 E-value=0.0084 Score=54.57 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCChhHHHHHhhhc
Q psy15725 13 KFKLVFLGEQSVGKTSLITRFMYD 36 (355)
Q Consensus 13 ~~~I~vvG~~~vGKStLl~~l~~~ 36 (355)
.-+++|+|++|+|||||++.+.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998873
No 493
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.15 E-value=0.013 Score=48.11 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChhHHHHHhhh
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~ 35 (355)
..|++.|.+||||||+++.|..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999998876
No 494
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.14 E-value=0.01 Score=49.90 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChhHHHHHhhh
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~ 35 (355)
..|+++|.+||||||+.++|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999875
No 495
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.13 E-value=0.011 Score=47.44 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHhhh
Q psy15725 15 KLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~ 35 (355)
.|+++|.+|||||||+.++..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999887
No 496
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=95.12 E-value=0.015 Score=55.85 Aligned_cols=53 Identities=19% Similarity=0.238 Sum_probs=40.2
Q ss_pred ccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEE
Q psy15725 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234 (355)
Q Consensus 182 ~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i 234 (355)
+.|+++|+||+|+.+.+.+...+....+...+.+++++|+.++.+++.++..+
T Consensus 150 ~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l 202 (535)
T 3dpu_A 150 KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSL 202 (535)
T ss_dssp SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHH
T ss_pred CCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHH
Confidence 68999999999998777777777888888888899999999999988765444
No 497
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.10 E-value=0.006 Score=49.40 Aligned_cols=150 Identities=14% Similarity=0.236 Sum_probs=108.1
Q ss_pred CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ 88 (355)
Q Consensus 9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 88 (355)
.+.+.++|+++|++|||||||+++|.+..+.. ...+++..+.....+..+ ...+.
T Consensus 3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~-----------------------~~~~~~t~~~~~~~~~~~--~~~~~ 57 (188)
T 2wjg_A 3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYI-----------------------GNWPGVTVEKKEGEFEYN--GEKFK 57 (188)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEE-----------------------EECTTSCCEEEEEEEEET--TEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCccc-----------------------cCCCCeeccceEEEEEeC--CcEEE
Confidence 34577999999999999999999999843211 112333333344444443 36899
Q ss_pred EEecCCccccc------cccccccc--CccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccccccc
Q psy15725 89 LWDTAGQERFR------SLIPSYIR--DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFH 160 (355)
Q Consensus 89 i~D~~g~~~~~------~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
+|||||+..+. .++..+++ .+|++++|+|.++ ++....|+..+..
T Consensus 58 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~------------------------ 110 (188)
T 2wjg_A 58 VVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME------------------------ 110 (188)
T ss_dssp EEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT------------------------
T ss_pred EEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh------------------------
Confidence 99999998875 34555554 4999999999875 5666677776643
Q ss_pred ccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725 161 HANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVR 231 (355)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~ 231 (355)
.++|+++|+||+|+...+.+. ....+++...+.+++++|+.++.+++.++
T Consensus 111 --------------------~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 160 (188)
T 2wjg_A 111 --------------------MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGIEELK 160 (188)
T ss_dssp --------------------TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHH
T ss_pred --------------------cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCHHHHH
Confidence 278999999999986554444 35567777778899999999988877643
No 498
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.09 E-value=0.012 Score=49.35 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChhHHHHHhhh
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~ 35 (355)
+.|+++|.+||||||+.++|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998866
No 499
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.06 E-value=0.011 Score=47.62 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChhHHHHHhhh
Q psy15725 14 FKLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 14 ~~I~vvG~~~vGKStLl~~l~~ 35 (355)
..|+++|.+||||||+.+.|..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4699999999999999998875
No 500
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.06 E-value=0.0078 Score=53.28 Aligned_cols=21 Identities=19% Similarity=0.518 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhHHHHHhhh
Q psy15725 15 KLVFLGEQSVGKTSLITRFMY 35 (355)
Q Consensus 15 ~I~vvG~~~vGKStLl~~l~~ 35 (355)
.++++|+.|+|||||++-+.+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTT
T ss_pred EEEEECCCCchHHHHHHHHHc
Confidence 689999999999999988776
Done!