RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15725
(355 letters)
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 270 bits (692), Expect = 7e-91
Identities = 157/230 (68%), Positives = 161/230 (70%), Gaps = 64/230 (27%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MS+ GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI
Sbjct: 4 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI-------------- 49
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
GIDFLSKTMYLEDRTVRLQLWDTAG ERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 50 ---------GIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITN 100
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
NSF QT+KWIDDVRTERG
Sbjct: 101 -----------------------------------------VNSFQQTTKWIDDVRTERG 119
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
SDVIIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 120 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 169
Score = 217 bits (555), Expect = 3e-70
Identities = 114/128 (89%), Positives = 121/128 (94%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAG ERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 63 RTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 123 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 182
Query: 348 TENKPPED 355
T+++ ED
Sbjct: 183 TQDRSRED 190
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 265 bits (680), Expect = 1e-89
Identities = 162/228 (71%), Positives = 163/228 (71%), Gaps = 64/228 (28%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI
Sbjct: 4 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI---------------- 47
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 48 -------GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN-- 98
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
NSFHQTSKWIDDVRTERGSD
Sbjct: 99 ---------------------------------------TNSFHQTSKWIDDVRTERGSD 119
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 120 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 167
Score = 216 bits (552), Expect = 3e-70
Identities = 116/119 (97%), Positives = 117/119 (98%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSFHQTSKWIDDVRTERGSDV
Sbjct: 61 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDV 120
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD
Sbjct: 121 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 179
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 243 bits (622), Expect = 9e-81
Identities = 68/228 (29%), Positives = 106/228 (46%), Gaps = 64/228 (28%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
S GN KLV LG+ GK+SL+ RF+ D F ++TI
Sbjct: 2 SMAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTI---------------- 45
Query: 63 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
G F S+T+ + D TV+ ++WDTAGQER+ SL P Y R + A++V+D+TN
Sbjct: 46 -------GAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTN-- 96
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
SF + KW+ +++ + +
Sbjct: 97 ---------------------------------------QASFERAKKWVQELQAQGNPN 117
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
+++ L GNK+DL D R+V+ E+ + A+E + F+ETSAK NVK++
Sbjct: 118 MVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEI 165
Score = 206 bits (527), Expect = 2e-66
Identities = 51/123 (41%), Positives = 82/123 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
V+ ++WDTAGQER+ SL P Y R + A++V+D+TN SF + KW+ +++ + ++
Sbjct: 59 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNM 118
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
++ L GNK+DL D R+V+ E+ + A+E + F+ETSAK NVK++F +A LP +
Sbjct: 119 VMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQP 178
Query: 348 TEN 350
TEN
Sbjct: 179 TEN 181
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 242 bits (620), Expect = 2e-80
Identities = 62/223 (27%), Positives = 99/223 (44%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G+ LR+ K+ LG+ VGK+S++ RF+ DSFD TI
Sbjct: 1 GSALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTI--------------------- 39
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
G F++KT+ ++ + +WDTAG ERFR+L P Y R S A++VYDIT +F
Sbjct: 40 --GASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTL 97
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ ++R H +++ +
Sbjct: 98 KNWVRELRQ------------------------HGP-----------------PSIVVAI 116
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNK DL+D R+V + + A ++ +F+ETSAK N+ ++
Sbjct: 117 AGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININEL 159
Score = 196 bits (500), Expect = 2e-62
Identities = 42/116 (36%), Positives = 69/116 (59%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ + +WDTAG ERFR+L P Y R S A++VYDIT +F W+ ++R +
Sbjct: 53 ELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSI 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
++ + GNK DL+D R+V + + A ++ +F+ETSAK N+ +LF ++ +P
Sbjct: 113 VVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 241 bits (617), Expect = 4e-80
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
GN + +FKLV LGE +VGK+SL+ RF+ F ++TI
Sbjct: 1 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTI--------------------- 39
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
G FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R + A+VVYDITN
Sbjct: 40 --GAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN------- 90
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
SF + W+ +++ + +++I L
Sbjct: 91 ----------------------------------EESFARAKNWVKELQRQASPNIVIAL 116
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNK DL++KR V +E + A + +++F+ETSAK NV ++
Sbjct: 117 SGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI 159
Score = 196 bits (502), Expect = 9e-63
Identities = 49/116 (42%), Positives = 76/116 (65%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
V+ ++WDTAGQER+ SL P Y R + A+VVYDITN SF + W+ +++ + ++
Sbjct: 53 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNI 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
+I L GNK DL++KR V +E + A + +++F+ETSAK NV ++F +A LP
Sbjct: 113 VIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 241 bits (618), Expect = 5e-80
Identities = 62/223 (27%), Positives = 102/223 (45%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G+ +R+ K+ LG+ VGK+S++ RF+ D FD+ TI
Sbjct: 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTI--------------------- 56
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
G F++KT+ + + +WDTAGQERF SL P Y R S AV+VYDIT
Sbjct: 57 --GASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITK------- 107
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
+SF+ KW+ +++ ++++ +
Sbjct: 108 ----------------------------------QDSFYTLKKWVKELKEHGPENIVMAI 133
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNK DLSD R+V ++ + A+ + + +ETSAK N++++
Sbjct: 134 AGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEEL 176
Score = 205 bits (525), Expect = 5e-66
Identities = 48/123 (39%), Positives = 79/123 (64%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ + +WDTAGQERF SL P Y R S AV+VYDIT +SF+ KW+ +++ ++
Sbjct: 70 ELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENI 129
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
++ + GNK DLSD R+V ++ + A+ + + +ETSAK N+++LF+ ++ +P +D
Sbjct: 130 VMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDP 189
Query: 348 TEN 350
EN
Sbjct: 190 HEN 192
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 232 bits (594), Expect = 1e-76
Identities = 57/224 (25%), Positives = 83/224 (37%), Gaps = 62/224 (27%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G+ +R+ K+V LG+ + GKTSL T F ++F Y+ TI
Sbjct: 1 GSHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTI--------------------- 39
Query: 68 TIGIDFLSKTMYLEDR-TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 126
G+DF + + L V LQ+WD GQ ++ YI + ++VYDITN SF
Sbjct: 40 --GLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFEN 97
Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
W + V E + ++
Sbjct: 98 LEDWYTV--------------------------------------VKKVSEESETQPLVA 119
Query: 187 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
LVGNK DL R + E+ R +E SAK G +V
Sbjct: 120 LVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC 163
Score = 190 bits (486), Expect = 3e-60
Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW---IDDVRTERG 284
V LQ+WD GQ ++ YI + ++VYDITN SF W + V E
Sbjct: 54 LNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESE 113
Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
+ ++ LVGNK DL R + E+ R +E SAK G +V F++VAA + G
Sbjct: 114 TQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILG 173
Query: 345 MDSTE 349
+ +
Sbjct: 174 IKLNK 178
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 226 bits (578), Expect = 3e-74
Identities = 63/223 (28%), Positives = 99/223 (44%), Gaps = 64/223 (28%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G+ FK+V LGE VGKTSL+ R+ + F++ + T+
Sbjct: 1 GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTL--------------------- 39
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
G FL+K + + + V L +WDTAGQERF +L P Y RDS A++VYDIT+ +SF +
Sbjct: 40 --GASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKV 97
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
W+ ++R +++ + +
Sbjct: 98 KNWVKELRK------------------------MLG-----------------NEICLCI 116
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNK DL +R VS +E E A+ + TSAK ++++
Sbjct: 117 VGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEEL 159
Score = 189 bits (482), Expect = 8e-60
Identities = 47/116 (40%), Positives = 72/116 (62%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+V L +WDTAGQERF +L P Y RDS A++VYDIT+ +SF + W+ ++R G+++
Sbjct: 53 KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEI 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
+ +VGNK DL +R VS +E E A+ + TSAK +++LF + +
Sbjct: 113 CLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 223 bits (572), Expect = 3e-73
Identities = 62/217 (28%), Positives = 85/217 (39%), Gaps = 65/217 (29%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
K+V +G +VGK+S+I R+ F Y+ TI G+DF
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTI-----------------------GVDF 42
Query: 74 LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
L + + + D VRL LWDTAGQE F ++ +Y R + V+V+ T+ SF S W +
Sbjct: 43 LERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREK 102
Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
V E D+ LV NK D
Sbjct: 103 VVAEV------------------------------------------GDIPTALVQNKID 120
Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
L D + EE E AK L + F TS K NV +V
Sbjct: 121 LLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEV 157
Score = 182 bits (464), Expect = 3e-57
Identities = 45/115 (39%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ VRL LWDTAGQE F ++ +Y R + V+V+ T+ SF S W + V E D+
Sbjct: 52 EDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDI 110
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
LV NK DL D + EE E AK L + F TS K NV ++F+ +A
Sbjct: 111 PTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 165
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 211 bits (540), Expect = 5e-68
Identities = 61/230 (26%), Positives = 98/230 (42%), Gaps = 65/230 (28%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
M+S K++ LG+ VGKTSL+ +++ F N Y+ATI
Sbjct: 1 MTSRKKV-----LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI-------------- 41
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
G DFL+K + ++DR V +Q+WDTAGQERF+SL ++ R + V+V+D+T
Sbjct: 42 ---------GADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTA 92
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
N+F W D+ A+
Sbjct: 93 PNTFKTLDSWRDEFLI------------------------QAS-------------PRDP 115
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
+ +++GNK DL +++ + + N+ + ETSAK NV+Q
Sbjct: 116 ENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQA 165
Score = 167 bits (424), Expect = 1e-50
Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 4/132 (3%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT----ER 283
+ V +Q+WDTAGQERF+SL ++ R + V+V+D+T N+F W D+
Sbjct: 55 RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRD 114
Query: 284 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
+ +++GNK DL +++ + + N+ + ETSAK NV+Q F+ +A
Sbjct: 115 PENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174
Query: 344 GMDSTENKPPED 355
++ E
Sbjct: 175 KQETEVELYNEF 186
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 201 bits (514), Expect = 4e-64
Identities = 45/221 (20%), Positives = 80/221 (36%), Gaps = 63/221 (28%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
K+ +GE +VGK++LI+ F F Y T G++
Sbjct: 21 CKVAVVGEATVGKSALISMFTSKG---------------------SKFLKDYAMTSGVEV 59
Query: 74 LSKTMYLEDRTVRLQLW--DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
+ + + D TV ++L+ DTAG + ++ I Y A++V+D+++ SF W
Sbjct: 60 VVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWF 119
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
+ +++ R + +LV NK
Sbjct: 120 ELLKSARP---------------------DRE-----------------RPLRAVLVANK 141
Query: 192 TDLSDKR-QVSTEEGERKAKELNVMFIETSAKA-GYNVKQV 230
TDL +R QV + + A + F + SA G +
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAP 182
Score = 162 bits (411), Expect = 1e-48
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 228 KQVRLQLW--DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG- 284
V ++L+ DTAG + ++ I Y A++V+D+++ SF W + +++ R
Sbjct: 69 TTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPD 128
Query: 285 --SDVIIMLVGNKTDLSDKR-QVSTEEGERKAKELNVMFIETSAKA-GYNVKQLFRRVAA 340
+ +LV NKTDL +R QV + + A + F + SA G + F +A
Sbjct: 129 RERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIAT 188
Query: 341 ALP 343
Sbjct: 189 TFY 191
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 200 bits (510), Expect = 1e-63
Identities = 66/240 (27%), Positives = 97/240 (40%), Gaps = 70/240 (29%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
S + + +K+V G+ +VGK+S + R + F AT+
Sbjct: 16 PRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATL-------------- 61
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
G+DF KT+ ++ LQLWDTAGQERFRS+ SY R + +++YD+T
Sbjct: 62 ---------GVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTC 112
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
SF +W+D + A+
Sbjct: 113 EKSFLNIREWVDMIED------------------------AAH----------------- 131
Query: 181 SDVIIMLVGNKTDLSD------KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
V IMLVGNK D+ D ++ V GE+ A +F ETSAK G N+ + L L
Sbjct: 132 ETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHL 191
Score = 167 bits (426), Expect = 5e-51
Identities = 47/121 (38%), Positives = 67/121 (55%), Gaps = 6/121 (4%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
++ LQLWDTAGQERFRS+ SY R + +++YD+T SF +W+D + V
Sbjct: 75 ERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETV 134
Query: 288 IIMLVGNKTDLSD------KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 341
IMLVGNK D+ D ++ V GE+ A +F ETSAK G N+ + +A
Sbjct: 135 PIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLARE 194
Query: 342 L 342
+
Sbjct: 195 V 195
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 199 bits (507), Expect = 4e-63
Identities = 64/185 (34%), Positives = 98/185 (52%), Gaps = 42/185 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF +F +TIG+DF KT+ ++ + V+LQ+WDTAGQERFR++ SY
Sbjct: 40 VGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYY 99
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + A++ YDIT +SF WI+DVR +A
Sbjct: 100 RSANGAILAYDITKRSSFLSVPHWIEDVRK------------------------YAG--- 132
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGY 225
S+++ +L+GNK+DLS+ R+VS E + A+ +++ IETSAK
Sbjct: 133 --------------SNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSS 178
Query: 226 NVKQV 230
NV++
Sbjct: 179 NVEEA 183
Score = 170 bits (432), Expect = 5e-52
Identities = 56/116 (48%), Positives = 81/116 (69%), Gaps = 1/116 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+V+LQ+WDTAGQERFR++ SY R + A++ YDIT +SF WI+DVR GS++
Sbjct: 76 KRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNI 135
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAAL 342
+ +L+GNK+DLS+ R+VS E + A+ +++ IETSAK NV++ F RVA L
Sbjct: 136 VQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 194 bits (495), Expect = 5e-61
Identities = 48/234 (20%), Positives = 90/234 (38%), Gaps = 68/234 (29%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
M+S+ G P +FKLV +G+ GKT+ + R + F+ Y AT+
Sbjct: 4 MASAAQ-GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATL-------------- 48
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
G++ + ++ +WDTAGQE+F L Y + A++++D+T+
Sbjct: 49 ---------GVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS 99
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
++ W D+
Sbjct: 100 RVTYKNVPNWHRDLV------------------------RVCE----------------- 118
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
++ I+L GNK D+ D++ + ++ N+ + + SAK+ YN ++ L L
Sbjct: 119 -NIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 169
Score = 159 bits (403), Expect = 2e-47
Identities = 34/124 (27%), Positives = 65/124 (52%), Gaps = 3/124 (2%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
N ++ +WDTAGQE+F L Y + A++++D+T+ ++ W D+
Sbjct: 60 NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCE 118
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
++ I+L GNK D+ D++ + ++ N+ + + SAK+ YN ++ F +A L G
Sbjct: 119 NIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 176
Query: 346 DSTE 349
+ E
Sbjct: 177 PNLE 180
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 192 bits (490), Expect = 7e-61
Identities = 67/233 (28%), Positives = 98/233 (42%), Gaps = 68/233 (29%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
MSS K++ LG+ VGKTSL+ R++ D + Y+ATI
Sbjct: 1 MSSRKKN-----ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATI-------------- 41
Query: 61 FDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT 119
G DFL+K + ++ D+ +Q+WDTAGQERF+SL ++ R + V+VYD+T
Sbjct: 42 ---------GADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVT 92
Query: 120 NANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTER 179
NA+SF W D+ HAN
Sbjct: 93 NASSFENIKSWRDEFLV------------------------HAN-------------VNS 115
Query: 180 GSDVIIMLVGNKTDLSD-KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQV 230
+++GNK D + K+ VS + + AK L + TSAK NV
Sbjct: 116 PETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTA 168
Score = 154 bits (392), Expect = 3e-46
Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 6/121 (4%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT----ER 283
K +Q+WDTAGQERF+SL ++ R + V+VYD+TNA+SF W D+
Sbjct: 56 KVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNS 115
Query: 284 GSDVIIMLVGNKTDLSD-KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAA 341
+++GNK D + K+ VS + + AK L + TSAK NV F +A +
Sbjct: 116 PETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARS 175
Query: 342 L 342
Sbjct: 176 A 176
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 190 bits (485), Expect = 3e-60
Identities = 70/223 (31%), Positives = 103/223 (46%), Gaps = 67/223 (30%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+ KLV LGE +VGK+S++ RF+ + F + TI G
Sbjct: 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTI-----------------------G 37
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
FL++ + + + TV+ ++WDTAGQERF SL P Y R++ A+VVYD+T
Sbjct: 38 AAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTK---------- 87
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
SF + W+ ++ + D+II LVGN
Sbjct: 88 -------------------------------PQSFIKARHWVKELHEQASKDIIIALVGN 116
Query: 191 KTD---LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
K D +R+V+ EEGE+ A+E ++F ETSAK G NV V
Sbjct: 117 KIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDV 159
Score = 148 bits (376), Expect = 5e-44
Identities = 52/119 (43%), Positives = 75/119 (63%), Gaps = 3/119 (2%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
V+ ++WDTAGQERF SL P Y R++ A+VVYD+T SF + W+ ++ + D+
Sbjct: 50 HTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDI 109
Query: 288 IIMLVGNKTD---LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
II LVGNK D +R+V+ EEGE+ A+E ++F ETSAK G NV +F + +P
Sbjct: 110 IIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 190 bits (485), Expect = 4e-60
Identities = 64/184 (34%), Positives = 92/184 (50%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTS + R+ DSF + +T+GIDF KT+Y D+ ++LQ+WDTAGQER+R++ +Y
Sbjct: 33 VGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYY 92
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + +++YDI N SF W ++T ++
Sbjct: 93 RGAMGFLLMYDIANQESFAAVQDWATQIKT------------------------YSW--- 125
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+ ++LVGNK DL D+R V E+G R A +L F E SAK N
Sbjct: 126 --------------DNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENIN 171
Query: 227 VKQV 230
VKQV
Sbjct: 172 VKQV 175
Score = 164 bits (417), Expect = 9e-50
Identities = 48/115 (41%), Positives = 71/115 (61%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQER+R++ +Y R + +++YDI N SF W ++T +
Sbjct: 69 KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNA 128
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
++LVGNK DL D+R V E+G R A +L F E SAK NVKQ+F R+ +
Sbjct: 129 QVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 190 bits (484), Expect = 8e-60
Identities = 55/184 (29%), Positives = 98/184 (53%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK++L++RF + F+ ++TIG++F ++++ ++ +T++ Q+WDTAG ER+R++ +Y
Sbjct: 40 VGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYY 99
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + A++VYDI ++ +W+ ++R HA+
Sbjct: 100 RGAVGALLVYDIAKHLTYENVERWLKELRD------------------------HAD--- 132
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
S+++IMLVGNK+DL R V T+E A++ + FIETSA N
Sbjct: 133 --------------SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTN 178
Query: 227 VKQV 230
V+
Sbjct: 179 VEAA 182
Score = 162 bits (413), Expect = 3e-49
Identities = 43/115 (37%), Positives = 71/115 (61%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++ Q+WDTAG ER+R++ +Y R + A++VYDI ++ +W+ ++R S++
Sbjct: 76 KTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI 135
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+IMLVGNK+DL R V T+E A++ + FIETSA NV+ F+ + +
Sbjct: 136 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 190 bits (485), Expect = 9e-60
Identities = 61/232 (26%), Positives = 98/232 (42%), Gaps = 58/232 (25%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI--------------VGKTSLITRFMY 58
+K V LGE SVGK+S++ R D+F TI K +
Sbjct: 7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNN 66
Query: 59 DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 118
+ + I ++ +WDTAGQER+ S++P Y R +T A+VV+DI
Sbjct: 67 NINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDI 126
Query: 119 TNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTE 178
+N+N+ + W++ ++
Sbjct: 127 SNSNTLDRAKTWVNQLKIS----------------------------------------- 145
Query: 179 RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
S+ II+LV NK D +K QV E ++ A++ N++FI+TSAK G N+K +
Sbjct: 146 --SNYIIILVANKIDK-NKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNI 194
Score = 177 bits (451), Expect = 8e-55
Identities = 49/159 (30%), Positives = 89/159 (55%), Gaps = 3/159 (1%)
Query: 185 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFR 244
++ + + ++ + NV+ N+ ++ +WDTAGQER+
Sbjct: 48 VVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYA 107
Query: 245 SLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV 304
S++P Y R +T A+VV+DI+N+N+ + W++ ++ S+ II+LV NK D +K QV
Sbjct: 108 SIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS--SNYIIILVANKIDK-NKFQV 164
Query: 305 STEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
E ++ A++ N++FI+TSAK G N+K +F +A +
Sbjct: 165 DILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIY 203
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 190 bits (485), Expect = 9e-60
Identities = 64/184 (34%), Positives = 93/184 (50%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+ L+ RF D++ N Y +TIG+DF KT+ L+ +TV+LQ+WDTAGQERFR++ SY
Sbjct: 19 VGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R S ++VYD+T+ SF+ W+ ++ +A
Sbjct: 79 RGSHGIIIVYDVTDQESFNGVKMWLQEIDR------------------------YAT--- 111
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
S V+ +LVGNK DL DKR V + + A + F+ETSA N
Sbjct: 112 --------------STVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTN 157
Query: 227 VKQV 230
V+
Sbjct: 158 VEDA 161
Score = 164 bits (416), Expect = 2e-49
Identities = 48/115 (41%), Positives = 69/115 (60%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K V+LQ+WDTAGQERFR++ SY R S ++VYD+T+ SF+ W+ ++ S V
Sbjct: 55 KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+ +LVGNK DL DKR V + + A + F+ETSA NV+ F +A +
Sbjct: 115 LKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 188 bits (481), Expect = 1e-59
Identities = 43/218 (19%), Positives = 80/218 (36%), Gaps = 64/218 (29%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
FK++ +GE VGK++L F D+ ++ D
Sbjct: 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMEN-----------------------SEDT 39
Query: 74 LSKTMYLEDRTVRLQLWDTAGQERFRSLIPS-YIRDSTVAVVVYDITNANSFHQTSKWID 132
+ + ++ V L ++D Q + ++ ++V+ +T+ SF + + +
Sbjct: 40 YERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLL 99
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
+R R D+ ++LVGNK+
Sbjct: 100 RLRAGRPHH----------------------------------------DLPVILVGNKS 119
Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
DL+ R+VS EEG A L+ IETSA +N +++
Sbjct: 120 DLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL 157
Score = 158 bits (403), Expect = 5e-48
Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPS-YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD 286
++V L ++D Q + ++ ++V+ +T+ SF + + + +R R
Sbjct: 49 EEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH 108
Query: 287 -VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
+ ++LVGNK+DL+ R+VS EEG A L+ IETSA +N ++LF
Sbjct: 109 DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAV 162
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 188 bits (480), Expect = 2e-59
Identities = 60/184 (32%), Positives = 94/184 (51%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
GK+ L+ +F+ F + TIG++F SK + + + V+LQ+WDTAGQERFRS+ SY
Sbjct: 21 TGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYY 80
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + A++VYDIT+ +++ + W+ D R A+
Sbjct: 81 RGAAGALLVYDITSRETYNALTNWLTDARM------------------------LAS--- 113
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+++I+L GNK DL R+V+ E R A+E +MF+ETSA G N
Sbjct: 114 --------------QNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEN 159
Query: 227 VKQV 230
V++
Sbjct: 160 VEEA 163
Score = 162 bits (413), Expect = 3e-49
Identities = 51/115 (44%), Positives = 76/115 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K V+LQ+WDTAGQERFRS+ SY R + A++VYDIT+ +++ + W+ D R ++
Sbjct: 57 KYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNI 116
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+I+L GNK DL R+V+ E R A+E +MF+ETSA G NV++ F + A +
Sbjct: 117 VIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 171
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 188 bits (480), Expect = 3e-59
Identities = 57/184 (30%), Positives = 93/184 (50%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+ L+ +F F TIG++F ++ + + + ++LQ+WDTAGQERFR++ SY
Sbjct: 26 VGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYY 85
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + A++VYDIT ++++ S W+ D R N
Sbjct: 86 RGAAGALMVYDITRRSTYNHLSSWLTDARN------------------------LTN--- 118
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+ +I+L+GNK DL +R V+ EE ++ A+E ++F+E SAK G N
Sbjct: 119 --------------PNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGEN 164
Query: 227 VKQV 230
V+
Sbjct: 165 VEDA 168
Score = 163 bits (414), Expect = 2e-49
Identities = 48/115 (41%), Positives = 77/115 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
++++LQ+WDTAGQERFR++ SY R + A++VYDIT ++++ S W+ D R +
Sbjct: 62 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNT 121
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+I+L+GNK DL +R V+ EE ++ A+E ++F+E SAK G NV+ F A +
Sbjct: 122 VIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 188 bits (480), Expect = 3e-59
Identities = 55/184 (29%), Positives = 94/184 (51%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT+L++RF + F + + TIG++F ++T+ L V+ Q+WDTAG ER+R++ +Y
Sbjct: 36 VGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYY 95
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + A++V+D+T ++ +W+ ++ HA
Sbjct: 96 RGAVGALLVFDLTKHQTYAVVERWLKELYD------------------------HAE--- 128
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+ +++MLVGNK+DLS R+V TEE A+ ++F+ETSA N
Sbjct: 129 --------------ATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTN 174
Query: 227 VKQV 230
V+
Sbjct: 175 VELA 178
Score = 161 bits (410), Expect = 8e-49
Identities = 41/115 (35%), Positives = 70/115 (60%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
V+ Q+WDTAG ER+R++ +Y R + A++V+D+T ++ +W+ ++ + +
Sbjct: 72 AAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATI 131
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
++MLVGNK+DLS R+V TEE A+ ++F+ETSA NV+ F V +
Sbjct: 132 VVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 188 bits (479), Expect = 5e-59
Identities = 61/184 (33%), Positives = 99/184 (53%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+ L+ +F F + TIG++F ++ + ++ + ++LQ+WDTAGQE FRS+ SY
Sbjct: 32 VGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYY 91
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + A++VYDIT +F+ + W++D R H++
Sbjct: 92 RGAAGALLVYDITRRETFNHLTSWLEDARQ------------------------HSS--- 124
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
S+++IML+GNK+DL +R V EEGE A+E ++F+ETSAK N
Sbjct: 125 --------------SNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACN 170
Query: 227 VKQV 230
V++
Sbjct: 171 VEEA 174
Score = 162 bits (412), Expect = 4e-49
Identities = 54/115 (46%), Positives = 79/115 (68%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
KQ++LQ+WDTAGQE FRS+ SY R + A++VYDIT +F+ + W++D R S++
Sbjct: 68 KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNM 127
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+IML+GNK+DL +R V EEGE A+E ++F+ETSAK NV++ F A +
Sbjct: 128 VIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 182
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 187 bits (478), Expect = 7e-59
Identities = 61/184 (33%), Positives = 96/184 (52%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+ L+ RF D++ +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQERFR++ SY
Sbjct: 44 VGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY 103
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + +VVYD+T+ SF+ +W+ ++ +A+
Sbjct: 104 RGAHGIIVVYDVTDQESFNNVKQWLQEIDR------------------------YAS--- 136
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+V +LVGNK DL+ K+ V + A L + F+ETSAK N
Sbjct: 137 --------------ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 182
Query: 227 VKQV 230
V+Q
Sbjct: 183 VEQS 186
Score = 162 bits (412), Expect = 6e-49
Identities = 48/115 (41%), Positives = 72/115 (62%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQERFR++ SY R + +VVYD+T+ SF+ +W+ ++ +V
Sbjct: 80 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV 139
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+LVGNK DL+ K+ V + A L + F+ETSAK NV+Q F +AA +
Sbjct: 140 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 194
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 188 bits (480), Expect = 7e-59
Identities = 40/221 (18%), Positives = 82/221 (37%), Gaps = 63/221 (28%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
+K+ +G+ VGKT+ I R + F+ Y AT+ G ++
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATV-GA---------------------VNH 49
Query: 74 LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
+ + ++ +WDTAGQE+ L Y ++ A++ +D+T+ + ++W+ +
Sbjct: 50 PVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKE 109
Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
+ ++ I++ NK D
Sbjct: 110 FQA------------------------VVG-----------------NEAPIVVCANKID 128
Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
+ +++++S + K N + E SAK +N L L
Sbjct: 129 IKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHL 169
Score = 167 bits (426), Expect = 9e-51
Identities = 30/127 (23%), Positives = 61/127 (48%), Gaps = 1/127 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
++ +WDTAGQE+ L Y ++ A++ +D+T+ + ++W+ + + G++
Sbjct: 59 NVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEA 118
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG-MD 346
I++ NK D+ +++++S + K N + E SAK +N F +A G D
Sbjct: 119 PIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPD 178
Query: 347 STENKPP 353
Sbjct: 179 LIFVSNV 185
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 187 bits (478), Expect = 8e-59
Identities = 61/184 (33%), Positives = 94/184 (51%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT L+ RF F ATIG+DF+ KT+ + V+LQ+WDTAGQERFRS+ SY
Sbjct: 37 VGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYY 96
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++ YDIT SF +W+ ++ +A+
Sbjct: 97 RSANALILTYDITCEESFRCLPEWLREIEQ------------------------YAS--- 129
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+ VI +LVGNK DL+++R+VS + E ++ ++ ++ETSAK N
Sbjct: 130 --------------NKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDN 175
Query: 227 VKQV 230
V+++
Sbjct: 176 VEKL 179
Score = 162 bits (411), Expect = 1e-48
Identities = 48/115 (41%), Positives = 76/115 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
++V+LQ+WDTAGQERFRS+ SY R + ++ YDIT SF +W+ ++ + V
Sbjct: 73 EKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKV 132
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
I +LVGNK DL+++R+VS + E ++ ++ ++ETSAK NV++LF +A L
Sbjct: 133 ITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 187 bits (477), Expect = 8e-59
Identities = 69/184 (37%), Positives = 102/184 (55%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKT ++ RF D+F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQERFR++ +Y
Sbjct: 19 VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDITN SF WI ++ HA+
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIEE------------------------HAS--- 111
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+DV M++GNK D++DKRQVS E GE+ A + + F+ETSAKA N
Sbjct: 112 --------------ADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157
Query: 227 VKQV 230
V+
Sbjct: 158 VENA 161
Score = 161 bits (411), Expect = 5e-49
Identities = 53/115 (46%), Positives = 77/115 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAGQERFR++ +Y R + ++VYDITN SF WI ++ +DV
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
M++GNK D++DKRQVS E GE+ A + + F+ETSAKA NV+ F +A +
Sbjct: 115 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 187 bits (477), Expect = 1e-58
Identities = 60/184 (32%), Positives = 97/184 (52%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
GK+ L+ +F+ + F TIG++F S+ + + +TV+LQ+WDTAGQERFRS+ SY
Sbjct: 36 TGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYY 95
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + A++VYDIT+ +++ + W+ D RT A+
Sbjct: 96 RGAAGALLVYDITSRETYNSLAAWLTDART------------------------LAS--- 128
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+++++L GNK DL +R+V+ E R A+E +MF+ETSA G N
Sbjct: 129 --------------PNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGEN 174
Query: 227 VKQV 230
V++
Sbjct: 175 VEEA 178
Score = 162 bits (412), Expect = 7e-49
Identities = 51/115 (44%), Positives = 78/115 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K V+LQ+WDTAGQERFRS+ SY R + A++VYDIT+ +++ + W+ D RT ++
Sbjct: 72 KTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNI 131
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+++L GNK DL +R+V+ E R A+E +MF+ETSA G NV++ F + A +
Sbjct: 132 VVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 186
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 188 bits (479), Expect = 1e-58
Identities = 55/184 (29%), Positives = 100/184 (54%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK++L++RF + F+ ++TIG++F ++T+ +E + ++ Q+WDTAGQER+R++ +Y
Sbjct: 24 VGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYY 83
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + A++VYDI+ ++S+ + W+ ++R +A+
Sbjct: 84 RGAVGALIVYDISKSSSYENCNHWLSELRE------------------------NAD--- 116
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+V + L+GNK+DL+ R V TEE + A+E ++F ETSA N
Sbjct: 117 --------------DNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSEN 162
Query: 227 VKQV 230
V +
Sbjct: 163 VDKA 166
Score = 161 bits (408), Expect = 4e-48
Identities = 45/128 (35%), Positives = 76/128 (59%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++ Q+WDTAGQER+R++ +Y R + A++VYDI+ ++S+ + W+ ++R +V
Sbjct: 60 KRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+ L+GNK+DL+ R V TEE + A+E ++F ETSA NV + F + + S
Sbjct: 120 AVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVS 179
Query: 348 TENKPPED 355
D
Sbjct: 180 KHQMDLGD 187
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 186 bits (475), Expect = 1e-58
Identities = 58/188 (30%), Positives = 95/188 (50%), Gaps = 42/188 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+SL+ RF ++F +Y TIG+DF +T+ + V+LQ+WDTAGQERFR++ +Y
Sbjct: 20 VGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + +VVYD+T+A SF +W+ ++ + +
Sbjct: 80 RGTHGVIVVYDVTSAESFVNVKRWLHEINQ------------------------NCD--- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV +LVGNK D +++ V TE+ + A ++ + ETSAK N
Sbjct: 113 ---------------DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVN 157
Query: 227 VKQVRLQL 234
V+++ +
Sbjct: 158 VEEMFNCI 165
Score = 160 bits (406), Expect = 3e-48
Identities = 44/115 (38%), Positives = 74/115 (64%), Gaps = 1/115 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
++V+LQ+WDTAGQERFR++ +Y R + +VVYD+T+A SF +W+ ++ + DV
Sbjct: 56 EKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEIN-QNCDDV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+LVGNK D +++ V TE+ + A ++ + ETSAK NV+++F + +
Sbjct: 115 CRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELV 169
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 187 bits (477), Expect = 1e-58
Identities = 57/184 (30%), Positives = 100/184 (54%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK++L++RF + F+ ++TIG++F ++++ ++ +T++ Q+WDTAGQER+R + +Y
Sbjct: 16 VGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYY 75
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + A++VYDI ++ +W+ ++R HA+
Sbjct: 76 RGAVGALLVYDIAKHLTYENVERWLKELRD------------------------HAD--- 108
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
S+++IMLVGNK+DL R V T+E A++ N+ FIETSA N
Sbjct: 109 --------------SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTN 154
Query: 227 VKQV 230
V++
Sbjct: 155 VEEA 158
Score = 160 bits (408), Expect = 2e-48
Identities = 45/115 (39%), Positives = 73/115 (63%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++ Q+WDTAGQER+R + +Y R + A++VYDI ++ +W+ ++R S++
Sbjct: 52 KTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI 111
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+IMLVGNK+DL R V T+E A++ N+ FIETSA NV++ F+ + +
Sbjct: 112 VIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 166
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 187 bits (476), Expect = 1e-58
Identities = 61/184 (33%), Positives = 96/184 (52%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+ L+ RF D++ +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQERFR++ SY
Sbjct: 27 VGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY 86
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + +VVYD+T+ SF+ +W+ ++ +A+
Sbjct: 87 RGAHGIIVVYDVTDQESFNNVKQWLQEIDR------------------------YAS--- 119
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+V +LVGNK DL+ K+ V + A L + F+ETSAK N
Sbjct: 120 --------------ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 165
Query: 227 VKQV 230
V+Q
Sbjct: 166 VEQS 169
Score = 162 bits (411), Expect = 7e-49
Identities = 48/115 (41%), Positives = 72/115 (62%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K ++LQ+WDTAGQERFR++ SY R + +VVYD+T+ SF+ +W+ ++ +V
Sbjct: 63 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
+LVGNK DL+ K+ V + A L + F+ETSAK NV+Q F +AA +
Sbjct: 123 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 186 bits (474), Expect = 2e-58
Identities = 68/217 (31%), Positives = 102/217 (47%), Gaps = 63/217 (29%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
FK++ +G+ VGKT L+ RF +F T+ +T+GIDF
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFL----------------------AGTFISTVGIDF 48
Query: 74 LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
+K + ++ V+LQ+WDTAGQERFRS+ +Y RD+ +++YD+TN SF W+ +
Sbjct: 49 RNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTE 108
Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
+ +A DV +ML+GNK D
Sbjct: 109 IHE------------------------YAQ-----------------HDVALMLLGNKVD 127
Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
+ +R V E+GE+ AKE + F+ETSAK G NV
Sbjct: 128 SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA 164
Score = 163 bits (415), Expect = 1e-49
Identities = 53/125 (42%), Positives = 76/125 (60%), Gaps = 2/125 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+V+LQ+WDTAGQERFRS+ +Y RD+ +++YD+TN SF W+ ++ DV
Sbjct: 58 VKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDV 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
+ML+GNK D + +R V E+GE+ AKE + F+ETSAK G NV F +A L
Sbjct: 118 ALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL--KRR 175
Query: 348 TENKP 352
+ P
Sbjct: 176 SMKAP 180
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 186 bits (475), Expect = 3e-58
Identities = 62/184 (33%), Positives = 92/184 (50%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTS + R+ DSF + +T+GIDF KT+Y D+ ++LQ+WDTAG ER+R++ +Y
Sbjct: 19 VGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + +++YDITN SF+ W ++T ++
Sbjct: 79 RGAMGFILMYDITNEESFNAVQDWSTQIKT------------------------YSW--- 111
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+ ++LVGNK D+ D+R VS+E G + A L F E SAK N
Sbjct: 112 --------------DNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNIN 157
Query: 227 VKQV 230
VKQ
Sbjct: 158 VKQT 161
Score = 161 bits (409), Expect = 2e-48
Identities = 47/115 (40%), Positives = 71/115 (61%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+++LQ+WDTAG ER+R++ +Y R + +++YDITN SF+ W ++T +
Sbjct: 55 KRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNA 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
++LVGNK D+ D+R VS+E G + A L F E SAK NVKQ F R+ +
Sbjct: 115 QVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 169
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 185 bits (472), Expect = 4e-58
Identities = 59/188 (31%), Positives = 88/188 (46%), Gaps = 44/188 (23%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSY 105
VGKT L RF F + +ATIG+DF + + ++ +++QLWDTAGQERFR S++ Y
Sbjct: 31 VGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHY 90
Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
R+ V VYD+TN SFH WI++ + H +
Sbjct: 91 YRNVHAVVFVYDMTNMASFHSLPAWIEECKQ------------------------HLLA- 125
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA-- 223
+D+ +LVGNK DL QV T+ ++ A ++ ETSAK
Sbjct: 126 ---------------NDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPN 170
Query: 224 -GYNVKQV 230
+V+ +
Sbjct: 171 DNDHVEAI 178
Score = 153 bits (390), Expect = 1e-45
Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 5/120 (4%)
Query: 228 KQVRLQLWDTAGQERFR-SLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE-RGS 285
+++++QLWDTAGQERFR S++ Y R+ V VYD+TN SFH WI++ + +
Sbjct: 67 ERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAN 126
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA---GYNVKQLFRRVAAAL 342
D+ +LVGNK DL QV T+ ++ A ++ ETSAK +V+ +F +A L
Sbjct: 127 DIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 185 bits (471), Expect = 5e-58
Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 39/185 (21%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+SL+ R++ + FD TIG++FL+K + ++ V +Q+WDTAGQERFRSL +
Sbjct: 18 VGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFY 77
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R S ++ + + ++ SF S W + +A+
Sbjct: 78 RGSDCCLLTFSVDDSQSFQNLSNWKKEFIY------------------------YAD--- 110
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGY 225
+ +++GNK D+S+ RQVSTEE + ++ + ETSAK
Sbjct: 111 ----------VKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDAT 159
Query: 226 NVKQV 230
NV
Sbjct: 160 NVAAA 164
Score = 147 bits (374), Expect = 1e-43
Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT----ER 283
V +Q+WDTAGQERFRSL + R S ++ + + ++ SF S W + +
Sbjct: 54 HFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKE 113
Query: 284 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVA 339
+++GNK D+S+ RQVSTEE + ++ + ETSAK NV F
Sbjct: 114 PESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAV 169
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 185 bits (472), Expect = 6e-58
Identities = 59/184 (32%), Positives = 95/184 (51%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTS + R+ D+F + +T+GIDF KT+Y ++ V+LQ+WDTAGQER+R++ +Y
Sbjct: 34 VGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYY 93
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + +++YDITN SF+ W ++T ++
Sbjct: 94 RGAMGFILMYDITNEESFNAVQDWATQIKT------------------------YSW--- 126
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+ ++LVGNK D+ ++R V TE+G+ A++L F E SAK +
Sbjct: 127 --------------DNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENIS 172
Query: 227 VKQV 230
V+Q
Sbjct: 173 VRQA 176
Score = 160 bits (407), Expect = 2e-48
Identities = 47/115 (40%), Positives = 75/115 (65%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+V+LQ+WDTAGQER+R++ +Y R + +++YDITN SF+ W ++T +
Sbjct: 70 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNA 129
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
++LVGNK D+ ++R V TE+G+ A++L F E SAK +V+Q F R+ A+
Sbjct: 130 QVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 184 bits (469), Expect = 2e-57
Identities = 61/184 (33%), Positives = 95/184 (51%), Gaps = 41/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+SL+ RF D+FD ATIG+DF KT+ ++ +L +WDTAGQERFR+L PSY
Sbjct: 26 VGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYY 85
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYD+T ++F + W++++ T +
Sbjct: 86 RGAQGVILVYDVTRRDTFVKLDNWLNELET------------------------YCTR-- 119
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+D++ MLVGNK D + R+V EG + A++ +++FIE SAK
Sbjct: 120 --------------NDIVNMLVGNKIDK-ENREVDRNEGLKFARKHSMLFIEASAKTCDG 164
Query: 227 VKQV 230
V+
Sbjct: 165 VQCA 168
Score = 153 bits (388), Expect = 2e-45
Identities = 48/129 (37%), Positives = 80/129 (62%), Gaps = 5/129 (3%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SD 286
+ +L +WDTAGQERFR+L PSY R + ++VYD+T ++F + W++++ T +D
Sbjct: 62 NKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRND 121
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL---P 343
++ MLVGNK D + R+V EG + A++ +++FIE SAK V+ F + + P
Sbjct: 122 IVNMLVGNKIDK-ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP 180
Query: 344 GMDSTENKP 352
G+ +EN+
Sbjct: 181 GLWESENQN 189
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 183 bits (467), Expect = 2e-57
Identities = 40/243 (16%), Positives = 82/243 (33%), Gaps = 73/243 (30%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+ KL+ +G GKT+L+ + M + AT+GID
Sbjct: 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGM---------------------QSATVGID 40
Query: 73 FLSKTMYLED---RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
+ + D R + L +WD AG+E F S P ++ + + VYD++ +
Sbjct: 41 VKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAE----- 95
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
W+ +++ R S ++LVG
Sbjct: 96 -----------------------------------VDAMKPWLFNIK-ARASSSPVILVG 119
Query: 190 NKTDLSDKRQ---VSTEEGERKAKELNVMFI-----ETSAKAGYNVKQVRLQLWDTAGQE 241
D+SD++Q ++ + + I + + + ++R + + +
Sbjct: 120 THLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNF 179
Query: 242 RFR 244
+ R
Sbjct: 180 KIR 182
Score = 139 bits (352), Expect = 3e-40
Identities = 24/131 (18%), Positives = 54/131 (41%), Gaps = 10/131 (7%)
Query: 224 GYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS-FHQTSKWIDDVRTE 282
+ + L +WD AG+E F S P ++ + + VYD++ + W+ +++
Sbjct: 50 DKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIK-A 108
Query: 283 RGSDVIIMLVGNKTDLSDKRQ---VSTEEGERKAKELNVMFI-----ETSAKAGYNVKQL 334
R S ++LVG D+SD++Q ++ + + I + + + +L
Sbjct: 109 RASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKL 168
Query: 335 FRRVAAALPGM 345
+ +
Sbjct: 169 RKTIINESLNF 179
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 183 bits (466), Expect = 4e-57
Identities = 59/185 (31%), Positives = 94/185 (50%), Gaps = 42/185 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGKTSL+ RF D+F ++T+G+DF KT+ L + +RLQ+WDTAGQERF S+ +Y
Sbjct: 37 VGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYY 96
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDIT +F KW+ + +A+
Sbjct: 97 RSAKGIILVYDITKKETFDDLPKWMKMIDK------------------------YAS--- 129
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGY 225
D ++LVGNK D R+++ ++GE+ A+++ + F E SAK +
Sbjct: 130 --------------EDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNF 175
Query: 226 NVKQV 230
NV ++
Sbjct: 176 NVDEI 180
Score = 157 bits (399), Expect = 4e-47
Identities = 43/116 (37%), Positives = 72/116 (62%), Gaps = 1/116 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K++RLQ+WDTAGQERF S+ +Y R + ++VYDIT +F KW+ + D
Sbjct: 73 KKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDA 132
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRRVAAAL 342
++LVGNK D R+++ ++GE+ A+++ + F E SAK +NV ++F ++ +
Sbjct: 133 ELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 183 bits (467), Expect = 6e-57
Identities = 54/194 (27%), Positives = 88/194 (45%), Gaps = 50/194 (25%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR----------TVRLQLWDTAGQE 96
VGKT+ + R+ + F+ + T+GIDF K + + V LQLWDTAGQE
Sbjct: 36 VGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE 95
Query: 97 RFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTH 156
RFRSL ++ RD+ ++++D+T+ SF W+ ++
Sbjct: 96 RFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQA-------------------- 135
Query: 157 LSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF 216
+A + I+L+GNK DL D+R+V+ + A + + +
Sbjct: 136 ----NAYC----------------ENPDIVLIGNKADLPDQREVNERQARELADKYGIPY 175
Query: 217 IETSAKAGYNVKQV 230
ETSA G NV++
Sbjct: 176 FETSAATGQNVEKA 189
Score = 158 bits (402), Expect = 3e-47
Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 1/126 (0%)
Query: 218 ETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 277
+ + +V LQLWDTAGQERFRSL ++ RD+ ++++D+T+ SF W+
Sbjct: 72 QGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMS 131
Query: 278 DVRT-ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFR 336
++ + I+L+GNK DL D+R+V+ + A + + + ETSA G NV++
Sbjct: 132 QLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVE 191
Query: 337 RVAAAL 342
+ +
Sbjct: 192 TLLDLI 197
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 181 bits (463), Expect = 6e-57
Identities = 64/184 (34%), Positives = 97/184 (52%), Gaps = 42/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+ L+ RF+ D F+ ++ TIGIDF KT+ + + V+LQ+WDTAGQERFR++ +Y
Sbjct: 14 VGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYY 73
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYDIT+ +F +W V HAN
Sbjct: 74 RGAMGIILVYDITDERTFTNIKQWFKTVNE------------------------HAN--- 106
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+ ++LVGNK+D+ + R V+ ++GE AKEL + FIE+SAK N
Sbjct: 107 --------------DEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDN 151
Query: 227 VKQV 230
V ++
Sbjct: 152 VNEI 155
Score = 157 bits (399), Expect = 2e-47
Identities = 48/115 (41%), Positives = 75/115 (65%), Gaps = 1/115 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+V+LQ+WDTAGQERFR++ +Y R + ++VYDIT+ +F +W V +
Sbjct: 50 KKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEA 109
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
++LVGNK+D+ + R V+ ++GE AKEL + FIE+SAK NV ++F +A +
Sbjct: 110 QLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 182 bits (463), Expect = 1e-56
Identities = 57/194 (29%), Positives = 87/194 (44%), Gaps = 50/194 (25%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE----------DRTVRLQLWDTAGQE 96
VGKTS++ ++ F++ + T+GIDF K + + + LQLWDTAG E
Sbjct: 22 VGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE 81
Query: 97 RFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTH 156
RFRSL ++ RD+ ++++D+TN SF WI ++
Sbjct: 82 RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQM-------------------- 121
Query: 157 LSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF 216
HA S + I+L GNK+DL D+R V EE A++ + +
Sbjct: 122 ----HAYS----------------ENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPY 161
Query: 217 IETSAKAGYNVKQV 230
ETSA G N+
Sbjct: 162 FETSAANGTNISHA 175
Score = 160 bits (408), Expect = 2e-48
Identities = 45/136 (33%), Positives = 71/136 (52%), Gaps = 2/136 (1%)
Query: 208 KAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 267
+ K + G +++ LQLWDTAG ERFRSL ++ RD+ ++++D+TN
Sbjct: 49 REKRVVYRANGPDGAVGRG-QRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQ 107
Query: 268 SFHQTSKWIDDVRTERGS-DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 326
SF WI ++ S + I+L GNK+DL D+R V EE A++ + + ETSA
Sbjct: 108 SFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAA 167
Query: 327 AGYNVKQLFRRVAAAL 342
G N+ + +
Sbjct: 168 NGTNISHAIEMLLDLI 183
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 180 bits (460), Expect = 6e-56
Identities = 64/184 (34%), Positives = 97/184 (52%), Gaps = 42/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK+ L+ RF+ D F+ ++ TIGIDF KT+ + + V+LQLWDTAGQERFR++ +Y
Sbjct: 31 VGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYY 90
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + ++VYD+T+ +F +W V HAN
Sbjct: 91 RGAMGIILVYDVTDERTFTNIKQWFKTVNE------------------------HAN--- 123
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
+ ++LVGNK+D+ + R V+ ++GE AKEL + FIE+SAK N
Sbjct: 124 --------------DEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDN 168
Query: 227 VKQV 230
V ++
Sbjct: 169 VNEI 172
Score = 155 bits (395), Expect = 2e-46
Identities = 48/115 (41%), Positives = 75/115 (65%), Gaps = 1/115 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
K+V+LQLWDTAGQERFR++ +Y R + ++VYD+T+ +F +W V +
Sbjct: 67 KKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEA 126
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
++LVGNK+D+ + R V+ ++GE AKEL + FIE+SAK NV ++F +A +
Sbjct: 127 QLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 180
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 179 bits (457), Expect = 1e-55
Identities = 39/185 (21%), Positives = 73/185 (39%), Gaps = 41/185 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS-Y 105
VGK++L F D+ ++ D + + ++ V L ++D Q +
Sbjct: 34 VGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHC 93
Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
++ ++V+ +T+ SF + + + +R R
Sbjct: 94 LQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH------------------------ 129
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 225
D+ ++LVGNK+DL+ R+VS EEG A L+ IETSA +
Sbjct: 130 ----------------DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHH 173
Query: 226 NVKQV 230
N +++
Sbjct: 174 NTREL 178
Score = 151 bits (385), Expect = 5e-45
Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPS-YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD 286
++V L ++D Q + ++ ++V+ +T+ SF + + + +R R
Sbjct: 70 EEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH 129
Query: 287 -VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
+ ++LVGNK+DL+ R+VS EEG A L+ IETSA +N ++LF
Sbjct: 130 DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAV 183
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 176 bits (448), Expect = 8e-55
Identities = 49/217 (22%), Positives = 79/217 (36%), Gaps = 65/217 (29%)
Query: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
+K++ LG VGK++L F D G +
Sbjct: 3 YKVLLLGAPGVGKSALARIFG------------------------GVEDGPEAEAAGHTY 38
Query: 74 LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
+++ ++ L ++D Q+ R L + V+VY +T+ SF + S+
Sbjct: 39 -DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQ 97
Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
+R R +D DV I+LVGNK+D
Sbjct: 98 LRRARQTD----------------------------------------DVPIILVGNKSD 117
Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
L R+VS +EG A + FIETSA +NV+ +
Sbjct: 118 LVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQAL 154
Score = 154 bits (392), Expect = 2e-46
Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
++ L ++D Q+ R L + V+VY +T+ SF + S+ +R R +D
Sbjct: 47 EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD 106
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
V I+LVGNK+DL R+VS +EG A + FIETSA +NV+ LF V
Sbjct: 107 VPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 175 bits (446), Expect = 5e-54
Identities = 54/221 (24%), Positives = 82/221 (37%), Gaps = 64/221 (28%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
+R K+V LG + VGKTSL +F+ F Y D T+
Sbjct: 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGY----------------DP-------TV 57
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
+ SK + L L L DTAGQ+ + L S+I V+VY +T+ +SF
Sbjct: 58 ENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIES 116
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
+ G V ++LVG
Sbjct: 117 LYQKLHEGHGKT----------------------------------------RVPVVLVG 136
Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DLS +R+V EG++ A+ F+E+SA+ + +
Sbjct: 137 NKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGI 177
Score = 152 bits (387), Expect = 3e-45
Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 1/125 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
+ L L DTAGQ+ + L S+I V+VY +T+ +SF + G
Sbjct: 70 DEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTR 129
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
V ++LVGNK DLS +R+V EG++ A+ F+E+SA+ + +F +V + ++
Sbjct: 130 VPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVE 189
Query: 347 STENK 351
++ +
Sbjct: 190 NSYGQ 194
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 174 bits (443), Expect = 6e-54
Identities = 47/219 (21%), Positives = 81/219 (36%), Gaps = 63/219 (28%)
Query: 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
+++ G VGK+SL+ RF+ +F +Y T+
Sbjct: 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTV-----------------------ED 38
Query: 72 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
+ + + + LQ+ DT G +F ++ I ++VY IT+ S +
Sbjct: 39 TY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIY 97
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
+ I +++ + + IMLVGNK
Sbjct: 98 EQ--------------------------------------ICEIKGDV-ESIPIMLVGNK 118
Query: 192 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
D S R+V + E E A+ F+ETSAK +NVK++
Sbjct: 119 CDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKEL 157
Score = 149 bits (379), Expect = 2e-44
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS-- 285
LQ+ DT G +F ++ I ++VY IT+ S + + + +G
Sbjct: 49 SICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVE 108
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
+ IMLVGNK D S R+V + E E A+ F+ETSAK +NVK+LF+ +
Sbjct: 109 SIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 174 bits (443), Expect = 1e-53
Identities = 61/231 (26%), Positives = 97/231 (41%), Gaps = 65/231 (28%)
Query: 1 MSSSGDFG-NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYD 59
+S G N L K++ +G VGK++L +FMYD F Y+ T
Sbjct: 5 ISGGGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK------------- 51
Query: 60 SFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT 119
+ K + L+ V++ + DTAGQE + ++ +Y R + V+ IT
Sbjct: 52 ----------ADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSIT 100
Query: 120 NANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTER 179
SF T+ + + + + +
Sbjct: 101 EMESFAATADFREQILRVKEDE-------------------------------------- 122
Query: 180 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
+V +LVGNK+DL DKRQVS EE + +A++ NV ++ETSAK NV +V
Sbjct: 123 --NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV 171
Score = 148 bits (377), Expect = 6e-44
Identities = 42/113 (37%), Positives = 70/113 (61%), Gaps = 1/113 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
++V++ + DTAGQE + ++ +Y R + V+ IT SF T+ + + + + +
Sbjct: 64 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 123
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
V +LVGNK+DL DKRQVS EE + +A++ NV ++ETSAK NV ++F +
Sbjct: 124 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 176
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 172 bits (439), Expect = 8e-53
Identities = 52/232 (22%), Positives = 90/232 (38%), Gaps = 67/232 (28%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
S + +++V +GEQ VGK++L F ++DS
Sbjct: 26 DSVISSESGNTYYRVVLIGEQGVGKSTLANIFAG---------------------VHDSM 64
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVR---LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 118
D+ + D +T+ ++ + L +W+ G+ + L ++ ++VY I
Sbjct: 65 DSDCEVLG-EDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSI 121
Query: 119 TNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTE 178
T+ SF + S+ +R R ++
Sbjct: 122 TDRASFEKASELRIQLRRARQTE------------------------------------- 144
Query: 179 RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
D+ I+LVGNK+DL R+VS EG A + FIETSA +NVK++
Sbjct: 145 ---DIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL 193
Score = 148 bits (375), Expect = 3e-43
Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 224 GYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER 283
G + + L +W+ G+ + L ++ ++VY IT+ SF + S+ +R R
Sbjct: 84 GESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR 141
Query: 284 GSD-VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
++ + I+LVGNK+DL R+VS EG A + FIETSA +NVK+LF +
Sbjct: 142 QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIV 198
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 170 bits (432), Expect = 3e-52
Identities = 51/222 (22%), Positives = 81/222 (36%), Gaps = 66/222 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+ +++V LG+ VGKTSL + F + + +G
Sbjct: 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH------------------------EQLG 37
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP--SYIRDSTVAVVVYDITNANSFHQTS 128
D +T+ ++ L + DT E+ S ++ + V+VY I + SF S
Sbjct: 38 EDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESAS 97
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
+ +R +D V I+LV
Sbjct: 98 ELRIQLRRTHQAD----------------------------------------HVPIILV 117
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
GNK DL+ R+VS EEG A + FIETSA +NV ++
Sbjct: 118 GNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAEL 159
Score = 144 bits (367), Expect = 1e-42
Identities = 41/115 (35%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 228 KQVRLQLWDTAGQERFRSLIP--SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
+ L + DT E+ S ++ + V+VY I + SF S+ +R +
Sbjct: 50 EDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQA 109
Query: 286 D-VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
D V I+LVGNK DL+ R+VS EEG A + FIETSA +NV +LF V
Sbjct: 110 DHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVV 164
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 169 bits (431), Expect = 4e-52
Identities = 55/220 (25%), Positives = 89/220 (40%), Gaps = 64/220 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+R++K+V LG VGK++L +F+ +F Y TI
Sbjct: 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE----------------------- 37
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
DF K + ++ L++ DTAG E+F S+ YI++ ++VY + N SF
Sbjct: 38 -DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPM 96
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
D + + + V ++LVGN
Sbjct: 97 RDQIIRVKRYE----------------------------------------KVPVILVGN 116
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
K DL +R+VS+ EG A+E F+ETSAK+ V ++
Sbjct: 117 KVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDEL 156
Score = 144 bits (367), Expect = 1e-42
Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
L++ DTAG E+F S+ YI++ ++VY + N SF D + + +
Sbjct: 49 SPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK 108
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
V ++LVGNK DL +R+VS+ EG A+E F+ETSAK+ V +LF +
Sbjct: 109 VPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 169 bits (431), Expect = 4e-52
Identities = 58/220 (26%), Positives = 92/220 (41%), Gaps = 64/220 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
L K++ +G VGK++L +FMYD F Y+ T
Sbjct: 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK-----------------------A 38
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
+ K + L+ V++ + DTAGQE + ++ +Y R + V+ IT SF T+ +
Sbjct: 39 DSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADF 97
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
+ + + + +V +LVGN
Sbjct: 98 REQILRVKEDE----------------------------------------NVPFLLVGN 117
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
K+DL DKRQVS EE + +A + NV ++ETSAK NV +V
Sbjct: 118 KSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKV 157
Score = 146 bits (371), Expect = 4e-43
Identities = 42/113 (37%), Positives = 69/113 (61%), Gaps = 1/113 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
++V++ + DTAGQE + ++ +Y R + V+ IT SF T+ + + + + +
Sbjct: 50 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 109
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
V +LVGNK+DL DKRQVS EE + +A + NV ++ETSAK NV ++F +
Sbjct: 110 VPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLM 162
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 170 bits (433), Expect = 5e-52
Identities = 61/231 (26%), Positives = 99/231 (42%), Gaps = 65/231 (28%)
Query: 1 MSSSGDFG-NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYD 59
M+++ G N L K++ +G VGK++L +FMYD F Y +
Sbjct: 1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDY----------------E 44
Query: 60 SFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT 119
T + K + L+ V++ + DTAGQE + ++ +Y R + V+ IT
Sbjct: 45 P-------TKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSIT 96
Query: 120 NANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTER 179
SF T+ + + + + +
Sbjct: 97 EMESFAATADFREQILRVKEDE-------------------------------------- 118
Query: 180 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
+V +LVGNK+DL DKRQVS EE + +A++ NV ++ETSAK NV +V
Sbjct: 119 --NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV 167
Score = 145 bits (367), Expect = 3e-42
Identities = 42/113 (37%), Positives = 70/113 (61%), Gaps = 1/113 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
++V++ + DTAGQE + ++ +Y R + V+ IT SF T+ + + + + +
Sbjct: 60 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 119
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
V +LVGNK+DL DKRQVS EE + +A++ NV ++ETSAK NV ++F +
Sbjct: 120 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 172
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 168 bits (429), Expect = 9e-52
Identities = 55/221 (24%), Positives = 82/221 (37%), Gaps = 64/221 (28%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
+ K+ LG +SVGK+SL +F+ F ++Y D TI
Sbjct: 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSY----------------DP-------TI 39
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
F +K + + + LQL DTAGQ+ + +Y D ++VY +T+ SF
Sbjct: 40 ENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKV 98
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
+ G + IMLVG
Sbjct: 99 IHGKLLDMVGKV----------------------------------------QIPIMLVG 118
Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL +R +S EEG+ A+ N F+E+SAK V
Sbjct: 119 NKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDV 159
Score = 146 bits (371), Expect = 4e-43
Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
++ LQL DTAGQ+ + +Y D ++VY +T+ SF + G
Sbjct: 52 QEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ 111
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
+ IMLVGNK DL +R +S EEG+ A+ N F+E+SAK +FRR+ MD
Sbjct: 112 IPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMD 171
Query: 347 STENK 351
++
Sbjct: 172 GACSQ 176
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 174 bits (442), Expect = 4e-50
Identities = 38/263 (14%), Positives = 81/263 (30%), Gaps = 79/263 (30%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
S G+ L++ K+ +G+ GKTSL+ + + ++FD T
Sbjct: 29 ARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTH-------------- 74
Query: 61 FDNTYQATIGIDFLSKTMYL--------EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 112
G++ ++K E + WD GQE + ++ S+V
Sbjct: 75 ---------GLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVY 125
Query: 113 VVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI 172
+++ D + W+ +
Sbjct: 126 MLLLDSR---TDSNKHYWLRHIE------------------------------------- 145
Query: 173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRL 232
+ G +++V NK D + + ++ + + F S K G V+ +
Sbjct: 146 -----KYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAK 200
Query: 233 QLWDTA--GQERFRSLIP-SYIR 252
L + + + S+I+
Sbjct: 201 SLKSAVLHPDSIYGTPLAPSWIK 223
Score = 153 bits (387), Expect = 3e-42
Identities = 32/180 (17%), Positives = 67/180 (37%), Gaps = 19/180 (10%)
Query: 185 IMLVGN----KTDL--------SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRL 232
+ L+G+ KT L D ++ T K+ + +K+
Sbjct: 44 VHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQA---PNIKGLENDDELKECLF 100
Query: 233 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLV 292
WD GQE + ++ S+V +++ D + W+ + + G +++V
Sbjct: 101 HFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIE-KYGGKSPVIVV 156
Query: 293 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTENKP 352
NK D + + ++ + + F S K G V+ + + + +A+ DS P
Sbjct: 157 MNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPDSIYGTP 216
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 163 bits (416), Expect = 1e-49
Identities = 52/221 (23%), Positives = 79/221 (35%), Gaps = 64/221 (28%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
P KLV +G VGK++L +F+ F + Y TI
Sbjct: 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE---------------------- 43
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
D +K ++ RL + DTAGQE F ++ Y+R ++V+ I + SF++ K
Sbjct: 44 --DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGK 101
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
+ + D D ++LVG
Sbjct: 102 LFTQILRVKDRD----------------------------------------DFPVVLVG 121
Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK DL +RQV E +V + E SAK NV +
Sbjct: 122 NKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA 162
Score = 144 bits (366), Expect = 2e-42
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
RL + DTAGQE F ++ Y+R ++V+ I + SF++ K + + D
Sbjct: 55 IPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDD 114
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
++LVGNK DL +RQV E +V + E SAK NV + F ++ A+
Sbjct: 115 FPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 174
Query: 347 STENKP 352
E P
Sbjct: 175 EQELPP 180
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 162 bits (413), Expect = 2e-49
Identities = 53/231 (22%), Positives = 90/231 (38%), Gaps = 65/231 (28%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
M++S L +KLV +G+ VGK++L +F F + Y D
Sbjct: 6 MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDY----------------DP 49
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
TI D K ++++ L + DTAGQE F ++ Y+R ++VY +T+
Sbjct: 50 -------TIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTD 101
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
SF ++ + + +
Sbjct: 102 KASFEHVDRFHQLILRVKDRE--------------------------------------- 122
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG-YNVKQV 230
++LV NK DL R+V+ ++G+ A + N+ +IETSAK NV +
Sbjct: 123 -SFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKT 172
Score = 138 bits (349), Expect = 9e-40
Identities = 35/114 (30%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
+ L + DTAGQE F ++ Y+R ++VY +T+ SF ++ + + +
Sbjct: 64 QWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRES 123
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG-YNVKQLFRRVA 339
++LV NK DL R+V+ ++G+ A + N+ +IETSAK NV + F +
Sbjct: 124 FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 160 bits (406), Expect = 4e-48
Identities = 49/223 (21%), Positives = 85/223 (38%), Gaps = 67/223 (30%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+ +++V +GEQ VGK++L F +G
Sbjct: 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDS----------------------DXEVLG 41
Query: 71 IDFLSKTMYLEDRT---VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
D +T+ ++ + + L +W+ G+ + L ++ ++VY IT+ SF +
Sbjct: 42 EDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA 99
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
S+ +R R ++ D+ I+L
Sbjct: 100 SELRIQLRRARQTE----------------------------------------DIPIIL 119
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
VGNK+DL R+VS EG A + FIETSA +NVK++
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162
Score = 138 bits (350), Expect = 7e-40
Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 3/131 (2%)
Query: 224 GYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER 283
G + + L +W+ G+ + L ++ ++VY IT+ SF + S+ +R R
Sbjct: 53 GESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR 110
Query: 284 GSD-VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
++ + I+LVGNK+DL R+VS EG A + FIETSA +NVK+LF + +
Sbjct: 111 QTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170
Query: 343 PGMDSTENKPP 353
++ K
Sbjct: 171 RLRRDSKEKNE 181
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 160 bits (406), Expect = 5e-48
Identities = 53/221 (23%), Positives = 85/221 (38%), Gaps = 64/221 (28%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
+++V G VGK+SL+ RF+ +F +TY TI ++TY+ I
Sbjct: 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTI---------------EDTYRQVI 49
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
D LQ+ DT G +F ++ I ++V+ +T+ S +
Sbjct: 50 SCD---------KSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGP 100
Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
I ++ D+ +MLVG
Sbjct: 101 IYK--------------------------------------LIVQIK-GSVEDIPVMLVG 121
Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
NK D +R+V T E + A+E F+ETSAK YNVK++
Sbjct: 122 NKCDE-TQREVDTREAQAVAQEWKCAFMETSAKMNYNVKEL 161
Score = 137 bits (348), Expect = 2e-39
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR--TERGS 285
LQ+ DT G +F ++ I ++V+ +T+ S + +
Sbjct: 54 SVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE 113
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
D+ +MLVGNK D +R+V T E + A+E F+ETSAK YNVK+LF+ +
Sbjct: 114 DIPVMLVGNKCDE-TQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELL 166
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 156 bits (396), Expect = 5e-47
Identities = 50/220 (22%), Positives = 87/220 (39%), Gaps = 65/220 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+ ++KLV +G VGK++L TI + + + F + TI
Sbjct: 1 MTEYKLVVVGAGGVGKSAL---------------TI--------QLIQNHFVDECDPTIE 37
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
+ K + ++ T L + DTAGQE + ++ Y+R + V+ I N SF ++
Sbjct: 38 DSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQY 96
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
+ ++ + SD DV ++LVGN
Sbjct: 97 REQIKRVKDSD----------------------------------------DVPMVLVGN 116
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
K+DL R V + + + A+ + +IETSAK V+
Sbjct: 117 KSDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDA 155
Score = 134 bits (341), Expect = 7e-39
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
+ L + DTAGQE + ++ Y+R + V+ I N SF ++ + ++ + SD
Sbjct: 49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
V ++LVGNK+DL R V + + + A+ + +IETSAK V+ F +
Sbjct: 109 VPMVLVGNKSDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 154 bits (392), Expect = 4e-46
Identities = 54/225 (24%), Positives = 89/225 (39%), Gaps = 65/225 (28%)
Query: 6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTY 65
+ + ++KLV +G VGK++L TI + + + F + Y
Sbjct: 14 LYFQGMTEYKLVVVGAGGVGKSAL---------------TI--------QLIQNHFVDEY 50
Query: 66 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 125
TI + K + ++ T L + DTAGQE + ++ Y+R + V+ I N+ SF
Sbjct: 51 DPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFA 109
Query: 126 QTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVII 185
+ + + ++ + SD DV +
Sbjct: 110 DINLYREQIKRVKDSD----------------------------------------DVPM 129
Query: 186 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
+LVGNK DL R V T++ AK + FIETSAK V+
Sbjct: 130 VLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDA 173
Score = 132 bits (335), Expect = 1e-37
Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
+ L + DTAGQE + ++ Y+R + V+ I N+ SF + + + ++ + SD
Sbjct: 67 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDD 126
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
V ++LVGNK DL R V T++ AK + FIETSAK V+ F +
Sbjct: 127 VPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLV 178
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 154 bits (391), Expect = 6e-46
Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 42/184 (22%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
VGK++L + + + F + Y TI + K + ++ T L + DTAGQE + ++ Y+
Sbjct: 15 VGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYM 73
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
R + V+ I N SF + + ++ + S+
Sbjct: 74 RTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSE------------------------- 108
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
DV ++LVGNK DL R V T++ + A+ + FIETSAK
Sbjct: 109 ---------------DVPMVLVGNKCDL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQG 152
Query: 227 VKQV 230
V
Sbjct: 153 VDDA 156
Score = 133 bits (336), Expect = 7e-38
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 2/113 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
+ L + DTAGQE + ++ Y+R + V+ I N SF + + ++ + S+
Sbjct: 50 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED 109
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
V ++LVGNK DL R V T++ + A+ + FIETSAK V F +
Sbjct: 110 VPMVLVGNKCDL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 153 bits (388), Expect = 8e-46
Identities = 53/221 (23%), Positives = 94/221 (42%), Gaps = 65/221 (29%)
Query: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
+R++KLV LG VGK++L +F+ F Y D TI
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKY----------------DP-------TIE 37
Query: 71 IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
+ K + ++ + L++ DTAG E+F ++ Y+++ +VY IT ++F+
Sbjct: 38 DSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDL 96
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
+ + + ++ DV ++LVGN
Sbjct: 97 REQILRVKDTE----------------------------------------DVPMILVGN 116
Query: 191 KTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGYNVKQV 230
K DL D+R V E+G+ A++ N F+E+SAK+ NV ++
Sbjct: 117 KCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEI 157
Score = 133 bits (336), Expect = 5e-38
Identities = 37/114 (32%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
+Q L++ DTAG E+F ++ Y+++ +VY IT ++F+ + + + ++
Sbjct: 49 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTED 108
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGYNVKQLFRRVA 339
V ++LVGNK DL D+R V E+G+ A++ N F+E+SAK+ NV ++F +
Sbjct: 109 VPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLV 162
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 153 bits (390), Expect = 9e-46
Identities = 43/223 (19%), Positives = 80/223 (35%), Gaps = 64/223 (28%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ L LG + GK++L +F+ F + Y + ++TY +
Sbjct: 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNL---------------EDTYSSE 61
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
+D + V L++ DTA + R+ Y+ + +VVY + + SF +S
Sbjct: 62 ETVD---------HQPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSS 111
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
+++ + E + +L+
Sbjct: 112 SYLEL--------------------------------------LALHAKETQRSIPALLL 133
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY-NVKQV 230
GNK D++ RQV+ EG A +F E SA + +V+ V
Sbjct: 134 GNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHV 176
Score = 131 bits (332), Expect = 3e-37
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW---IDDVRTERG 284
+ V L++ DTA + R+ Y+ + +VVY + + SF +S + + E
Sbjct: 67 QPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQ 125
Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY-NVKQLFRRVA 339
+ +L+GNK D++ RQV+ EG A +F E SA + +V+ +F
Sbjct: 126 RSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAV 181
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 152 bits (387), Expect = 3e-45
Identities = 56/223 (25%), Positives = 83/223 (37%), Gaps = 66/223 (29%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ KL G VGK++L+ RF+ F YD T
Sbjct: 24 AKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWE----------------YDP-------T 60
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
+ + ++D V +++ DTAGQE ++R V+VYDIT+ SF +
Sbjct: 61 LESTY-RHQATIDDEVVSMEILDTAGQEDTIQR-EGHMRWGEGFVLVYDITDRGSFEEVL 118
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
+ + + +V ++LV
Sbjct: 119 PLKNILDEIKKPK----------------------------------------NVTLILV 138
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY-NVKQV 230
GNK DL RQVSTEEGE+ A EL F E SA G N+ ++
Sbjct: 139 GNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEI 181
Score = 131 bits (333), Expect = 3e-37
Identities = 43/114 (37%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
+ V +++ DTAGQE ++R V+VYDIT+ SF + + + +
Sbjct: 74 EVVSMEILDTAGQEDTIQR-EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKN 132
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY-NVKQLFRRVA 339
V ++LVGNK DL RQVSTEEGE+ A EL F E SA G N+ ++F +
Sbjct: 133 VTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELC 186
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 141 bits (358), Expect = 5e-41
Identities = 51/233 (21%), Positives = 85/233 (36%), Gaps = 70/233 (30%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
+ +G N + K+V +G+ +VGKT L+ F Y T+ F
Sbjct: 12 TGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTV--------------F 57
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
+N + + + L LWDTAGQE + L P DS V ++ + + N
Sbjct: 58 EN-FSHVMKYK---------NEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNR 107
Query: 122 NSFHQ-TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
SF ++KW +++ H+
Sbjct: 108 TSFDNISTKWEPEIK------------------------HYI------------------ 125
Query: 181 SDVIIMLVGNKTDLSDKRQ--VSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
+LVG K DL V+ +EG+ ++L V +IE S+ A + +V
Sbjct: 126 DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEV 178
Score = 119 bits (300), Expect = 1e-32
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 6/133 (4%)
Query: 215 MFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TS 273
+F S Y ++ L LWDTAGQE + L P DS V ++ + + N SF ++
Sbjct: 56 VFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNIST 115
Query: 274 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQ--VSTEEGERKAKELN-VMFIETSAKAGYN 330
KW +++ +LVG K DL V+ +EG+ ++L V +IE S+ A
Sbjct: 116 KWEPEIK-HYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIG 174
Query: 331 VKQLFRRVA-AAL 342
+ ++F +
Sbjct: 175 LNEVFEKSVDCIF 187
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 140 bits (354), Expect = 2e-40
Identities = 31/222 (13%), Positives = 69/222 (31%), Gaps = 73/222 (32%)
Query: 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
+ K+ +G S GK++L+ R++ ++ F
Sbjct: 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG------------GRF---------- 56
Query: 72 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
K + ++ ++ L + D G + + V V+ + + SF +
Sbjct: 57 ---KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYF 108
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
+ + R + +V ++LVG +
Sbjct: 109 LRLCSFRNAS----------------------------------------EVPMVLVGTQ 128
Query: 192 TDLS--DKRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQV 230
+S + R + + + +L + ET A G NV++V
Sbjct: 129 DAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERV 170
Score = 123 bits (310), Expect = 5e-34
Identities = 23/116 (19%), Positives = 49/116 (42%), Gaps = 9/116 (7%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
+ L + D G + + V V+ + + SF + + + R +
Sbjct: 65 QSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASE 119
Query: 288 I-IMLVGNKTDLS--DKRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVA 339
+ ++LVG + +S + R + + + +L + ET A G NV+++F+ VA
Sbjct: 120 VPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVA 175
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 135 bits (342), Expect = 7e-39
Identities = 38/226 (16%), Positives = 69/226 (30%), Gaps = 73/226 (32%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
+ + +L LG+ GK+SLI RF+ S+ + T
Sbjct: 3 RSIPELRLGVLGDARSGKSSLIHRFLTGSYQ------------------------VLEKT 38
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
+ K M ++ +T + + + AG + + + + V+ + + NSF S
Sbjct: 39 ES-EQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVS 92
Query: 129 KW---IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVII 185
+ + +R E + + LVG
Sbjct: 93 RLHGQLSSLRGEGRGGLALALVG------------------------------------- 115
Query: 186 MLVGNKTDLSDKRQVSTEEGER-KAKELNVMFIETSAKAGYNVKQV 230
++ S R V A + ET A G NV +V
Sbjct: 116 --TQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRV 159
Score = 111 bits (279), Expect = 1e-29
Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 11/118 (9%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
+ + + + AG + + + + V+ + + NSF S+ + + RG
Sbjct: 52 QTHLVLIREEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGR 106
Query: 287 ----VIIMLVGNKTDLSDKRQVSTEEGER-KAKELNVMFIETSAKAGYNVKQLFRRVA 339
+ ++ ++ S R V A + ET A G NV ++F+ VA
Sbjct: 107 GGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVA 164
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 125 bits (316), Expect = 5e-35
Identities = 59/231 (25%), Positives = 93/231 (40%), Gaps = 78/231 (33%)
Query: 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
R K V +G+ +VGKT L+ + ++F Y T+ FDN + A + +
Sbjct: 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV--------------FDN-FSANVVV 51
Query: 72 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKW 130
+ TV L LWDTAGQE + L P R + V ++ + + + S+ + KW
Sbjct: 52 N---------GATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKW 102
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
I +++ H+A V I+LVG
Sbjct: 103 IPELK------------------------HYA------------------PGVPIVLVGT 120
Query: 191 KTDLSDKRQ----------VSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
K DL D +Q ++T +GE K + +IE S+K+ NVK V
Sbjct: 121 KLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGV 171
Score = 109 bits (275), Expect = 4e-29
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 13/133 (9%)
Query: 215 MFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TS 273
+F SA N V L LWDTAGQE + L P R + V ++ + + + S+ +
Sbjct: 41 VFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSK 100
Query: 274 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQ----------VSTEEGERKAKELN-VMFIE 322
KWI +++ V I+LVG K DL D +Q ++T +GE K + +IE
Sbjct: 101 KWIPELK-HYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIE 159
Query: 323 TSAKAGYNVKQLF 335
S+K+ NVK +F
Sbjct: 160 CSSKSQENVKGVF 172
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 125 bits (317), Expect = 7e-35
Identities = 54/229 (23%), Positives = 88/229 (38%), Gaps = 76/229 (33%)
Query: 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
+ K V +G+ +VGKT ++ + + F Y T+ FDN + A + +
Sbjct: 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV--------------FDN-FSANVAV 52
Query: 72 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKW 130
D + V L LWDTAGQE + L P R + + V+ + + + S+ KW
Sbjct: 53 D---------GQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKW 103
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
+ ++R A +V I+LVG
Sbjct: 104 MPELR------------------------RFA------------------PNVPIVLVGT 121
Query: 191 KTDLSD--------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
K DL D +++ +GE K++ +IE S+K NVK V
Sbjct: 122 KLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAV 170
Score = 108 bits (273), Expect = 2e-28
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 11/118 (9%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
+ V L LWDTAGQE + L P R + + V+ + + + S+ KW+ ++R +
Sbjct: 55 QIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PN 113
Query: 287 VIIMLVGNKTDLSD--------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLF 335
V I+LVG K DL D +++ +GE K++ +IE S+K NVK +F
Sbjct: 114 VPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 125 bits (315), Expect = 2e-34
Identities = 56/244 (22%), Positives = 94/244 (38%), Gaps = 81/244 (33%)
Query: 2 SSSGDFGNP-LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
S +G+ P +R K+V +G+ GKTSL+ F +F +Y T+
Sbjct: 22 SMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTV-------------- 67
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
F+ Y + + + V L +WDTAGQ+ + L P + D++V ++ +D+T+
Sbjct: 68 FER-YMVNLQVK---------GKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTS 117
Query: 121 ANSFHQ-TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTER 179
NSF ++W +V H
Sbjct: 118 PNSFDNIFNRWYPEVN------------------------HFC----------------- 136
Query: 180 GSDVIIMLVGNKTDLSDKRQ------------VSTEEGERKAKELN-VMFIETSAKAGYN 226
V I++VG KTDL + V+ G+ A+ + V ++E SA+ N
Sbjct: 137 -KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDN 195
Query: 227 VKQV 230
V V
Sbjct: 196 VHAV 199
Score = 107 bits (269), Expect = 8e-28
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 15/135 (11%)
Query: 215 MFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TS 273
+F K V L +WDTAGQ+ + L P + D++V ++ +D+T+ NSF +
Sbjct: 67 VFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFN 126
Query: 274 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQ------------VSTEEGERKAKELN-VMF 320
+W +V V I++VG KTDL + V+ G+ A+ + V +
Sbjct: 127 RWYPEVN-HFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAY 185
Query: 321 IETSAKAGYNVKQLF 335
+E SA+ NV +F
Sbjct: 186 LECSARLHDNVHAVF 200
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 123 bits (311), Expect = 4e-34
Identities = 57/243 (23%), Positives = 88/243 (36%), Gaps = 80/243 (32%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
S + + K V +G+ +VGKT L+ + ++F Y T+ F
Sbjct: 19 SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------F 64
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DN Y A + +D + V L LWDTAGQE + L P + V ++ + + +
Sbjct: 65 DN-YSANVMVD---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP 114
Query: 122 NSFHQ-TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
SF +KW +VR HH
Sbjct: 115 ASFENVRAKWYPEVR------------------------HHC------------------ 132
Query: 181 SDVIIMLVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNV 227
+ I+LVG K DL D ++ +G AKE+ V ++E SA +
Sbjct: 133 PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL 192
Query: 228 KQV 230
K V
Sbjct: 193 KTV 195
Score = 106 bits (265), Expect = 2e-27
Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 16/143 (11%)
Query: 215 MFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TS 273
+F SA + K V L LWDTAGQE + L P + V ++ + + + SF +
Sbjct: 63 VFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRA 122
Query: 274 KWIDDVRTERGSDVIIMLVGNKTDLSD------------KRQVSTEEGERKAKELN-VMF 320
KW +VR + I+LVG K DL D ++ +G AKE+ V +
Sbjct: 123 KWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 181
Query: 321 IETSAKAGYNVKQLFRRVA-AAL 342
+E SA +K +F A L
Sbjct: 182 LECSALTQRGLKTVFDEAIRAVL 204
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 122 bits (307), Expect = 2e-33
Identities = 55/243 (22%), Positives = 90/243 (37%), Gaps = 80/243 (32%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
G R K V +G+ +VGKTSL+ + + + Y T F
Sbjct: 9 GRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA--------------F 54
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
DN + A + +D R VRLQL DTAGQ+ F L P ++ + ++ + + +
Sbjct: 55 DN-FSAVVSVD---------GRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSP 104
Query: 122 NSFH-QTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
+SF + KW+ ++R H
Sbjct: 105 SSFQNVSEKWVPEIR------------------------CHC------------------ 122
Query: 181 SDVIIMLVGNKTDLSDKRQ------------VSTEEGERKAKELN-VMFIETSAKAGYNV 227
I+LVG ++DL + + V E + A+E+ +IE SA N+
Sbjct: 123 PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNL 182
Query: 228 KQV 230
K+V
Sbjct: 183 KEV 185
Score = 103 bits (258), Expect = 2e-26
Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH-QTSKWIDDVRTERGSD 286
+ VRLQL DTAGQ+ F L P ++ + ++ + + + +SF + KW+ ++R
Sbjct: 66 RPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIR-CHCPK 124
Query: 287 VIIMLVGNKTDLSDKRQ------------VSTEEGERKAKELN-VMFIETSAKAGYNVKQ 333
I+LVG ++DL + + V E + A+E+ +IE SA N+K+
Sbjct: 125 APIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKE 184
Query: 334 LF 335
+F
Sbjct: 185 VF 186
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 121 bits (305), Expect = 4e-33
Identities = 56/244 (22%), Positives = 89/244 (36%), Gaps = 80/244 (32%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
+ + + + + KLV +G+ + GKT L+ F D F Y T+
Sbjct: 13 LGTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-------------- 58
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
F+N Y A I +D + V L LWDTAGQE + L P D+ V ++ + + +
Sbjct: 59 FEN-YVADIEVD---------GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDS 108
Query: 121 ANSFHQ-TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTER 179
+S KW+ +V+ H
Sbjct: 109 PDSLENIPEKWVPEVK------------------------HFC----------------- 127
Query: 180 GSDVIIMLVGNKTDLSDKRQ------------VSTEEGERKAKELN-VMFIETSAKAGYN 226
+V I+LV NK DL V T++G A + ++E SAK
Sbjct: 128 -PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEG 186
Query: 227 VKQV 230
V++V
Sbjct: 187 VREV 190
Score = 104 bits (260), Expect = 1e-26
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 15/135 (11%)
Query: 215 MFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TS 273
+F A + KQV L LWDTAGQE + L P D+ V ++ + + + +S
Sbjct: 58 VFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPE 117
Query: 274 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQ------------VSTEEGERKAKELN-VMF 320
KW+ +V+ +V I+LV NK DL V T++G A + +
Sbjct: 118 KWVPEVK-HFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDY 176
Query: 321 IETSAKAGYNVKQLF 335
+E SAK V+++F
Sbjct: 177 LECSAKTKEGVREVF 191
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 119 bits (301), Expect = 8e-33
Identities = 49/238 (20%), Positives = 84/238 (35%), Gaps = 81/238 (34%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
N K K+V +G+ GKT+L+ F D F Y T+ F+N Y A
Sbjct: 2 SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV--------------FEN-YTA 46
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ- 126
+ ID + + L LWDT+G + ++ P DS ++ +DI+ +
Sbjct: 47 SFEID---------TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSV 97
Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
KW +++ + ++
Sbjct: 98 LKKWKGEIQ------------------------EFC------------------PNTKML 115
Query: 187 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAG-YNVKQV 230
LVG K+DL + VS ++G AK++ +IE SA +V+ +
Sbjct: 116 LVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDI 173
Score = 103 bits (258), Expect = 1e-26
Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 16/136 (11%)
Query: 215 MFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TS 273
+F +A + +++ L LWDT+G + ++ P DS ++ +DI+ +
Sbjct: 40 VFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLK 99
Query: 274 KWIDDVRTERGSDVIIMLVGNKTDLSD------------KRQVSTEEGERKAKELN-VMF 320
KW +++ E + ++LVG K+DL + VS ++G AK++ +
Sbjct: 100 KWKGEIQ-EFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATY 158
Query: 321 IETSAKAG-YNVKQLF 335
IE SA +V+ +F
Sbjct: 159 IECSALQSENSVRDIF 174
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 120 bits (302), Expect = 1e-32
Identities = 59/232 (25%), Positives = 87/232 (37%), Gaps = 80/232 (34%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+ KLV +G+ + GKT L+ F D F Y T+ F+N Y A I +D
Sbjct: 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV--------------FEN-YIADIEVD 69
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWI 131
+ V L LWDTAGQE + L P D+ V ++ + I + +S KW
Sbjct: 70 ---------GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT 120
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
+V+ H +V I+LVGNK
Sbjct: 121 PEVK------------------------HFC------------------PNVPIILVGNK 138
Query: 192 TDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
DL + V +EEG A ++ ++E SAK V++V
Sbjct: 139 KDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREV 190
Score = 106 bits (266), Expect = 1e-27
Identities = 45/143 (31%), Positives = 67/143 (46%), Gaps = 16/143 (11%)
Query: 215 MFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TS 273
+F A + KQV L LWDTAGQE + L P D+ V ++ + I + +S
Sbjct: 58 VFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE 117
Query: 274 KWIDDVRTERGSDVIIMLVGNKTDLSD------------KRQVSTEEGERKAKELN-VMF 320
KW +V+ +V I+LVGNK DL + V +EEG A ++ +
Sbjct: 118 KWTPEVK-HFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGY 176
Query: 321 IETSAKAGYNVKQLFRRVA-AAL 342
+E SAK V+++F A L
Sbjct: 177 LECSAKTKEGVREVFEMATRAGL 199
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 114 bits (287), Expect = 8e-31
Identities = 58/237 (24%), Positives = 90/237 (37%), Gaps = 81/237 (34%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
G+P + K V +G+ +VGKT L+ + ++F Y T+ FDN Y A
Sbjct: 1 GSP-QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSA 44
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ- 126
+ +D + V L LWDTAGQE + L P + V+++ + + + SF
Sbjct: 45 NVMVD---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENV 95
Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
+KW +VR HH + I+
Sbjct: 96 RAKWYPEVR------------------------HHC------------------PNTPII 113
Query: 187 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
LVG K DL D ++ +G AKE+ V ++E SA +K V
Sbjct: 114 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 170
Score = 103 bits (258), Expect = 2e-26
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ +F SA + K V L LWDTAGQE + L P + V+++ + + + SF
Sbjct: 35 IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFEN 94
Query: 272 -TSKWIDDVRTERGSDVIIMLVGNKTDLSD------------KRQVSTEEGERKAKELN- 317
+KW +VR + I+LVG K DL D ++ +G AKE+
Sbjct: 95 VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 153
Query: 318 VMFIETSAKAGYNVKQLF 335
V ++E SA +K +F
Sbjct: 154 VKYLECSALTQRGLKTVF 171
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 113 bits (284), Expect = 3e-30
Identities = 50/243 (20%), Positives = 88/243 (36%), Gaps = 80/243 (32%)
Query: 2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
SS G K V +G+ +VGKT L+ + D+F Y T+ F
Sbjct: 7 RSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV--------------F 52
Query: 62 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
D+ Y ++ + + L L+DTAGQE + L P + V ++ + + N
Sbjct: 53 DH-YAVSVTVG---------GKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNP 102
Query: 122 NSFH-QTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
SF +W+ +++ +A
Sbjct: 103 ASFQNVKEEWVPELK------------------------EYA------------------ 120
Query: 181 SDVIIMLVGNKTDLSDKRQ------------VSTEEGERKAKELN-VMFIETSAKAGYNV 227
+V +L+G + DL D + + E+G++ AKE+ ++E SA +
Sbjct: 121 PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGL 180
Query: 228 KQV 230
K V
Sbjct: 181 KTV 183
Score = 99.5 bits (248), Expect = 4e-25
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 15/130 (11%)
Query: 220 SAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH-QTSKWIDD 278
+ KQ L L+DTAGQE + L P + V ++ + + N SF +W+ +
Sbjct: 56 AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPE 115
Query: 279 VRTERGSDVIIMLVGNKTDLSDKRQ------------VSTEEGERKAKELN-VMFIETSA 325
++ E +V +L+G + DL D + + E+G++ AKE+ ++E SA
Sbjct: 116 LK-EYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA 174
Query: 326 KAGYNVKQLF 335
+K +F
Sbjct: 175 LTQKGLKTVF 184
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 112 bits (282), Expect = 9e-30
Identities = 48/233 (20%), Positives = 83/233 (35%), Gaps = 81/233 (34%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
K K+V +G+ GKT+L+ F D F Y T+ F+N Y A+ ID
Sbjct: 28 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV--------------FEN-YTASFEID 72
Query: 73 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWI 131
+ + L LWDT+G + ++ P DS ++ +DI+ + KW
Sbjct: 73 ---------TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWK 123
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
+++ + ++LVG K
Sbjct: 124 GEIQ------------------------EFC------------------PNTKMLLVGCK 141
Query: 192 TDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAG-YNVKQV 230
+DL + VS ++G AK++ +IE SA +V+ +
Sbjct: 142 SDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDI 194
Score = 97.9 bits (244), Expect = 2e-24
Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 16/136 (11%)
Query: 215 MFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TS 273
+F +A + +++ L LWDT+G + ++ P DS ++ +DI+ +
Sbjct: 61 VFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLK 120
Query: 274 KWIDDVRTERGSDVIIMLVGNKTDLSD------------KRQVSTEEGERKAKELN-VMF 320
KW +++ E + ++LVG K+DL + VS ++G AK++ +
Sbjct: 121 KWKGEIQ-EFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATY 179
Query: 321 IETSAKAG-YNVKQLF 335
IE SA +V+ +F
Sbjct: 180 IECSALQSENSVRDIF 195
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 109 bits (275), Expect = 1e-28
Identities = 44/238 (18%), Positives = 83/238 (34%), Gaps = 81/238 (34%)
Query: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
+ + KLV +G+ GKT+++ D + TY T+ F+N Y A
Sbjct: 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV--------------FEN-YTA 66
Query: 68 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ- 126
+ + ++ V L LWDT+G + ++ P DS ++ +DI+ +
Sbjct: 67 CLETE---------EQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSA 117
Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
KW ++ + ++
Sbjct: 118 LKKWRTEIL------------------------DYC------------------PSTRVL 135
Query: 187 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAG-YNVKQV 230
L+G KTDL + +S E+G AK+L +++E SA ++ +
Sbjct: 136 LIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI 193
Score = 94.2 bits (234), Expect = 7e-23
Identities = 32/136 (23%), Positives = 61/136 (44%), Gaps = 16/136 (11%)
Query: 215 MFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TS 273
+F +A ++V L LWDT+G + ++ P DS ++ +DI+ +
Sbjct: 60 VFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALK 119
Query: 274 KWIDDVRTERGSDVIIMLVGNKTDLSD------------KRQVSTEEGERKAKELN-VMF 320
KW ++ + ++L+G KTDL + +S E+G AK+L ++
Sbjct: 120 KWRTEIL-DYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIY 178
Query: 321 IETSAKAG-YNVKQLF 335
+E SA ++ +F
Sbjct: 179 LEGSAFTSEKSIHSIF 194
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 101 bits (252), Expect = 4e-25
Identities = 36/223 (16%), Positives = 79/223 (35%), Gaps = 24/223 (10%)
Query: 20 GEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY 79
G+ +GK+ L RF+ S D + S+++ + + +S++
Sbjct: 35 GQCGIGKSCLCNRFVRPSADEFHLDHT----SVLSTSDFGGRVVNNDHFLYWGEVSRS-L 89
Query: 80 LEDRTVRLQLW-------DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
+ ++ + D Q + + YI+ + +A D
Sbjct: 90 EDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKR----AAATKLASAEKLMYFCT--D 143
Query: 133 DVRTERGSDVIIMLVGSIETNFTHL----SFHHANSFHQTSKWIDDVRTERGSDVI-IML 187
+ E+ + M G + + L S +F K++ ++ + I++
Sbjct: 144 QLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVV 203
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
V K D +R + +K+ N+ +ETSA++ NV
Sbjct: 204 VLTKCDEGVERYIRDAHTFALSKK-NLQVVETSARSNVNVDLA 245
Score = 92.0 bits (228), Expect = 8e-22
Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 6/110 (5%)
Query: 235 WDTAGQERF--RSLIPSYIRDSTVAVVVYDITNAN--SFHQTSKWIDDVRTERGSDVI-I 289
D G E+ + +P ++ D++ +F K++ ++ + I
Sbjct: 142 TDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPI 201
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
++V K D +R + +K+ N+ +ETSA++ NV F +
Sbjct: 202 VVVLTKCDEGVERYIRDAHTFALSKK-NLQVVETSARSNVNVDLAFSTLV 250
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 90.4 bits (224), Expect = 1e-20
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
K V L LWDTAG E + L P + V ++ + + + SFH +KW +VR +
Sbjct: 201 KPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPN 259
Query: 287 VIIMLVGNKTDL----------SDKRQ--VSTEEGERKAKELN-VMFIETSAKAGYNVKQ 333
I+LVG K DL +K+ ++ +G AKE+ V ++E SA +K
Sbjct: 260 TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKT 319
Query: 334 LF 335
+F
Sbjct: 320 VF 321
Score = 80.8 bits (199), Expect = 2e-17
Identities = 54/236 (22%), Positives = 86/236 (36%), Gaps = 80/236 (33%)
Query: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
K V +G+ +VGKT L+ + ++F ++ FDN Y A
Sbjct: 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFP--------------GEYIPTVFDN-YSAN 195
Query: 69 IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-T 127
+ +D + V L LWDTAG E + L P + V ++ + + + SFH
Sbjct: 196 VMVD---------GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVR 246
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
+KW +VR HH + I+L
Sbjct: 247 AKWYPEVR------------------------HHC------------------PNTPIIL 264
Query: 188 VGNKTDL----------SDKRQ--VSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
VG K DL +K+ ++ +G AKE+ V ++E SA +K V
Sbjct: 265 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 320
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 64.0 bits (156), Expect = 3e-12
Identities = 41/230 (17%), Positives = 72/230 (31%), Gaps = 53/230 (23%)
Query: 3 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
S+ +F N FK+V+ G GKT+ + +++Y + +V + R
Sbjct: 4 STINFANREINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDER------- 55
Query: 63 NTYQATIGIDFLSKTM-YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
T+ DFL + ++ R L+ GQ + + +R V V D
Sbjct: 56 -----TLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSA-- 108
Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
R ++ + + ++ L
Sbjct: 109 -----------PNRLRANAESMRNMRENLAEYGLTL-----------------------D 134
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERK-AKELNVMFIETSAKAGYNVKQV 230
DV I++ NK DL D + E E +E A G V +
Sbjct: 135 DVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFET 182
Score = 56.7 bits (137), Expect = 8e-10
Identities = 28/159 (17%), Positives = 52/159 (32%), Gaps = 20/159 (12%)
Query: 198 RQVSTEEGERKAKELNVMFIETSAKAGYNV----------KQVRLQLWDTAGQERFRSLI 247
+ + ++ E + E+ + E ++ + R L+ GQ + +
Sbjct: 32 KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASR 91
Query: 248 PSYIRDSTVAVVVYDIT------NANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 301
+R V V D NA S + + + I++ V NK DL D
Sbjct: 92 KLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQV-NKRDLPD- 149
Query: 302 RQVSTEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVA 339
+ E E +E A G V + + V+
Sbjct: 150 -ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVS 187
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.7 bits (144), Expect = 7e-10
Identities = 62/439 (14%), Positives = 119/439 (27%), Gaps = 174/439 (39%)
Query: 10 PLRKFKLV--FLG-------EQSVGKTSLITRFMYDSFDNTY-----------------Q 43
P +LV FLG VG+ + F+N Y
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND 113
Query: 44 ATIVGKTSLITRFMYDSFDNTYQATIGID----------FL-------SKTM-------- 78
T+V LI + A I ++ +
Sbjct: 114 TTLVKTKELIKNY--------ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN 165
Query: 79 ---YLEDRTVRLQ-LWDTAGQERFRSLIPSYIRDS--TVAVVVYDITNANSFHQTS---- 128
Y E+ L+ L+ T + L+ I+ S T++ ++ +A
Sbjct: 166 TDDYFEE----LRDLYQT-----YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 129 KWIDDVRTERGSDV---------IIMLVGSIETNFTH-------LSFHHANSFHQTSKWI 172
+W+++ D +I + H L F K
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGV-----IQLAHYVVTAKLLGFTPGE-LRSYLKGA 270
Query: 173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRL 232
T ++ + ++ + + E F + KA + +
Sbjct: 271 ----TGHSQGLVTAVA-----IA---ETDSWES----------FFVSVRKA------ITV 302
Query: 233 QLW-DTAGQERFR--SLIPSYIRDS--------TVAVVVYDITNANSFHQTSKWIDDVRT 281
+ E + SL PS + DS + + + ++T Q +++ +
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE----QVQDYVNKTNS 358
Query: 282 E--RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET-SAKAGYNVKQLFRRV 338
G V I LV N G + + + ++ Y + R+
Sbjct: 359 HLPAGKQVEISLV-N--------------GAK-------NLVVSGPPQSLYGLNLTLRKA 396
Query: 339 AAALPGMDST-----ENKP 352
A G+D + E K
Sbjct: 397 KAP-SGLDQSRIPFSERKL 414
Score = 36.6 bits (84), Expect = 0.013
Identities = 46/299 (15%), Positives = 86/299 (28%), Gaps = 97/299 (32%)
Query: 59 DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW-DTAGQERFR--SLIPSYIRDS------ 109
DS+++ + + + + + + E + SL PS + DS
Sbjct: 287 DSWESFFVSV-------------RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 110 --TVAVVVYDITNANSFHQTSKWIDDVRTE--RGSDVIIMLVGSIETNFTHLSFHHANSF 165
+ + + ++T Q +++ + G V I LV N +S S
Sbjct: 334 VPSPMLSISNLTQE----QVQDYVNKTNSHLPAGKQVEISLVNG-AKNLV-VS-GPPQSL 386
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSA---- 221
+ + + + G D Q ERK K + F+ ++
Sbjct: 387 YGLNLTLRKAKAPSGLD----------------QSRIPFSERKLK-FSNRFLPVASPFHS 429
Query: 222 -----------------KAGYNVKQVRLQLWDTAGQERFR----SLIPSYIRDSTVAVVV 260
+N K +++ ++DT R S+ + V
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV- 488
Query: 261 YDITNANSFHQTSKWIDD----------VRTER-----GSDVII---MLVGNKTDLSDK 301
F T I D V T R G VI+ + + D K
Sbjct: 489 -KWETTTQFKAT--HILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFK 544
Score = 31.6 bits (71), Expect = 0.56
Identities = 39/256 (15%), Positives = 70/256 (27%), Gaps = 107/256 (41%)
Query: 1 MSSSGD-FGNPLRKF-KLVF-LG---EQSVGKTSLITRFMYDSFDN-----TYQATIVGK 49
+ S + F +RK ++F +G ++ TSL + DS +N + +I
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL 344
Query: 50 T-----SLITRF-------------MYDSFDN------------------TYQATIGID- 72
T + + + + N +A G+D
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ 404
Query: 73 ---------------FL-------SKTMYLEDRTVRLQLWDTAGQERFR--SL-IPSY-- 105
FL S L + + F + IP Y
Sbjct: 405 SRIPFSERKLKFSNRFLPVASPFHSH--LLVPASDLINKDLVKNNVSFNAKDIQIPVYDT 462
Query: 106 -----IR---DSTVAVVVYDIT-------NANSFHQTSKWIDD-------------VRTE 137
+R S +V I F T I D R +
Sbjct: 463 FDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT--HILDFGPGGASGLGVLTHRNK 520
Query: 138 RGSDVIIMLVGSIETN 153
G+ V +++ G+++ N
Sbjct: 521 DGTGVRVIVAGTLDIN 536
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 50.0 bits (120), Expect = 2e-07
Identities = 25/137 (18%), Positives = 52/137 (37%), Gaps = 11/137 (8%)
Query: 208 KAKELNVMFIETSAKAGYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYD 262
K K N G+++++ ++D +GQ R+R+L Y ++ + V D
Sbjct: 40 KLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVID 99
Query: 263 ITNANSFHQTSKWIDDVRTE---RGSDVIIMLVGNKTDLSD---KRQVSTEEGERKAKEL 316
++ + +D + + + I+ NK DL D +VS K+
Sbjct: 100 SSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDK 159
Query: 317 NVMFIETSAKAGYNVKQ 333
+ A G +++
Sbjct: 160 PWHICASDAIKGEGLQE 176
Score = 39.9 bits (94), Expect = 3e-04
Identities = 27/150 (18%), Positives = 55/150 (36%), Gaps = 30/150 (20%)
Query: 1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
SSG ++ ++ LG + GKT++I + N I+
Sbjct: 9 HHSSGLVPRGSKEVHVLCLGLDNSGKTTIINKLK---PSNAQSQNIL------------- 52
Query: 61 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
TIG F + + ++ ++D +GQ R+R+L Y ++ + V D ++
Sbjct: 53 ------PTIG--FSIEK--FKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSD 102
Query: 121 ANSFHQTSKWIDDVRTE---RGSDVIIMLV 147
+ +D + + + I L
Sbjct: 103 RLRMVVAKEELDTLLNHPDIKHRRIPI-LF 131
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 49.2 bits (118), Expect = 3e-07
Identities = 23/127 (18%), Positives = 52/127 (40%), Gaps = 9/127 (7%)
Query: 216 FIETSAKAGYNV-----KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 270
+ T G+NV K + +WD GQ++ R L Y +++ + V D +
Sbjct: 54 IVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQ 113
Query: 271 QTSKWIDDVRTERG-SDVIIMLVGNKTDLSDK---RQVSTEEGERKAKELNVMFIETSAK 326
+++ + + E D ++++ NK D+ + +++ + G + + T A
Sbjct: 114 ESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCAT 173
Query: 327 AGYNVKQ 333
G +
Sbjct: 174 QGTGLYD 180
Score = 42.3 bits (100), Expect = 7e-05
Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKT+++ + T TIG F +T +E + + +WD GQ++ R L Y +
Sbjct: 41 GKTTILYKLKLGEIVTT-IPTIG--FNVET--VEYKNICFTVWDVGGQDKIRPLWRHYFQ 95
Query: 108 DSTVAVVVYDITNANSFHQTSKWIDDVRTER 138
++ + V D + +++ + + E
Sbjct: 96 NTQGLIFVVDSNDRERVQESADELQKMLQED 126
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.0 bits (121), Expect = 4e-07
Identities = 62/455 (13%), Positives = 130/455 (28%), Gaps = 149/455 (32%)
Query: 8 GNPLRKFKLVF--LGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTY 65
+ + +F L + + ++ +F+ + Y+ F+
Sbjct: 58 KDAVSGTLRLFWTLLSK---QEEMVQKFVEEVLRINYK------------FLMSPIKTEQ 102
Query: 66 QATIGIDFLSKTMYLEDRTV--------------RLQLWDTAGQERFRSLIPS-YIR--- 107
+ + MY+E R RLQ + ++ L P+ +
Sbjct: 103 RQPSMM----TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL-RQALLELRPAKNVLIDG 157
Query: 108 -----DSTVAVVV---YDITNANSFHQTSKWIDDVRTERGSDVIIM---LVGSIETNFTH 156
+ VA+ V Y + F W++ V+ M L+ I+ N+T
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFK--IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 157 LSFHHANSFHQTSKW-------------------IDDVR----------------TERGS 181
S H +N + + +V+ T R
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 182 DVIIMLVGNKTDLSDKRQVSTEEG--ERKAKELNVMFIETSAKA---------------- 223
V L T + + K L + +++ +
Sbjct: 276 QVTDFLSAATT--THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 224 GYNVKQ--VRLQLWDTAGQERFRSLI--------PSYIRDSTVAVVVYDITNANSFHQTS 273
+++ W ++ ++I P+ R + V+ S H +
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP----PSAHIPT 389
Query: 274 K-----WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE----LNVMFIETS 324
W D ++++ +M+V NK L V E++ KE + +++E
Sbjct: 390 ILLSLIWFDVIKSD------VMVVVNK--LHKYSLV-----EKQPKESTISIPSIYLELK 436
Query: 325 AKAGYNVKQLFRRVAAALPGMDSTEN----KPPED 355
K N L R + + ++ P D
Sbjct: 437 VKLE-NEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 47.9 bits (115), Expect = 8e-07
Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 224 GYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 278
G+N++++ ++LWD GQ RFRS+ Y R + V + D + + + +
Sbjct: 56 GFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHN 115
Query: 279 V-RTERGSDVIIMLVGNKTDLSD---KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333
+ + + ++++GNK DL ++++ + ++ + S K N+
Sbjct: 116 LLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDI 174
Score = 44.5 bits (106), Expect = 1e-05
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKT+ + F+ T+G F + + V ++LWD GQ RFRS+ Y R
Sbjct: 34 GKTTFVNVIASGQFNEDMIPTVG--FNMRK--ITKGNVTIKLWDIGGQPRFRSMWERYCR 89
Query: 108 DSTVAVVVYD 117
+ V + D
Sbjct: 90 GVSAIVYMVD 99
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 47.6 bits (114), Expect = 1e-06
Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 9/119 (7%)
Query: 224 GYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 278
G+N+K + +L +WD GQ+ RS +Y + + V D + + +
Sbjct: 51 GFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQS 110
Query: 279 V-RTERGSDVIIMLVGNKTDLSDK---RQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333
+ ER + +++ NK DL + + + SA G ++
Sbjct: 111 LLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLP 169
Score = 41.1 bits (97), Expect = 1e-04
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKT+++ +F + D T+G F KT LE R +L +WD GQ+ RS +Y
Sbjct: 30 GKTTILKKFNGEDVDTI-SPTLG--FNIKT--LEHRGFKLNIWDVGGQKSLRSYWRNYFE 84
Query: 108 DSTVAVVVYDITNANSFHQT 127
+ + V D +
Sbjct: 85 STDGLIWVVDSADRQRMQDC 104
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 47.3 bits (113), Expect = 1e-06
Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 9/127 (7%)
Query: 216 FIETSAKAGYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 270
+ T G+NV+ + +L +WD GQ R Y D+ + V D T+ +
Sbjct: 43 VVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMS 102
Query: 271 QTSKWIDDVRTERG-SDVIIMLVGNKTDLSDK---RQVSTEEGERKAKELNVMFIETSAK 326
SK + + E D +++ NK D +VS E + K+ + + +SA
Sbjct: 103 TASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAI 162
Query: 327 AGYNVKQ 333
G + +
Sbjct: 163 KGEGITE 169
Score = 42.6 bits (101), Expect = 5e-05
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKT+++ R T + TIG F +T L + ++L +WD GQ R Y
Sbjct: 30 GKTTILYRLQIGEVVTT-KPTIG--FNVET--LSYKNLKLNVWDLGGQTSIRPYWRCYYA 84
Query: 108 DSTVAVVVYDITNANSFHQT 127
D+ + V D T+ +
Sbjct: 85 DTAAVIFVVDSTDKDRMSTA 104
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 46.8 bits (112), Expect = 1e-06
Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 13/129 (10%)
Query: 216 FIETSAKAGYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 270
+ T G+NV+ V +WD GQ++ R L Y +++ + V D + +
Sbjct: 25 IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVN 84
Query: 271 QTSKWIDDV-RTERGSDVIIMLVGNKTDLSDKRQVSTEE-----GERKAKELNVMFIETS 324
+ + + + + D ++++ NK DL + ++ E G + N T
Sbjct: 85 EAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATC 142
Query: 325 AKAGYNVKQ 333
A +G + +
Sbjct: 143 ATSGDGLYE 151
Score = 41.8 bits (99), Expect = 8e-05
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKT+++ + T TIG F +T +E + + +WD GQ++ R L Y +
Sbjct: 12 GKTTILYKLKLGEIVTT-IPTIG--FNVET--VEYKNISFTVWDVGGQDKIRPLWRHYFQ 66
Query: 108 DSTVAVVVYDITNANSFHQT 127
++ + V D + ++
Sbjct: 67 NTQGLIFVVDSNDRERVNEA 86
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 46.4 bits (111), Expect = 2e-06
Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 9/127 (7%)
Query: 216 FIETSAKAGYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 270
+ T G+NV+ V + Q+WD G R Y ++ + V D + +
Sbjct: 32 VVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIG 91
Query: 271 QTSKWIDDV-RTERGSDVIIMLVGNKTDLSD---KRQVSTEEGERKAKELNVMFIETSAK 326
+ + + E I+++ NK D+ +++ G K+ +TSA
Sbjct: 92 ISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSAT 151
Query: 327 AGYNVKQ 333
G + +
Sbjct: 152 KGTGLDE 158
Score = 41.8 bits (99), Expect = 8e-05
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKT+++ R T TIG F +T + + ++ Q+WD G R Y
Sbjct: 19 GKTTILYRLQVGEVVTT-IPTIG--FNVET--VTYKNLKFQVWDLGGLTSIRPYWRCYYS 73
Query: 108 DSTVAVVVYDITNANSFHQT 127
++ + V D + + +
Sbjct: 74 NTDAVIYVVDSCDRDRIGIS 93
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 46.5 bits (111), Expect = 2e-06
Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 9/127 (7%)
Query: 216 FIETSAKAGYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 270
+ TS G NV+++ R +WD GQE RS +Y ++ +VV D T+
Sbjct: 41 VVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERIS 100
Query: 271 QTSKWIDDV-RTERGSDVIIMLVGNKTDLSD---KRQVSTEEGERKAKELNVMFIETSAK 326
T + + + E +++ NK D+ + ++S K+ A
Sbjct: 101 VTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCAL 160
Query: 327 AGYNVKQ 333
G + Q
Sbjct: 161 TGEGLCQ 167
Score = 41.5 bits (98), Expect = 1e-04
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKT+++ +F + +T TIG + + R +WD GQE RS +Y
Sbjct: 28 GKTTILYQFSMNEVVHT-SPTIG--SNVEE--IVINNTRFLMWDIGGQESLRSSWNTYYT 82
Query: 108 DSTVAVVVYDITNANSFHQT 127
++ +VV D T+ T
Sbjct: 83 NTEFVIVVVDSTDRERISVT 102
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 46.4 bits (111), Expect = 2e-06
Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 9/127 (7%)
Query: 216 FIETSAKAGYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 270
+ G+N+K V +L +WD GQ + R SY ++ + + V D + F
Sbjct: 41 ISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFE 100
Query: 271 QTSKWIDDV-RTERGSDVIIMLVGNKTDLSD---KRQVSTEEGERKAKELNVMFIETSAK 326
+T + + ++ E+ S V +++ NK DL +++ ++ SA
Sbjct: 101 ETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSAL 160
Query: 327 AGYNVKQ 333
G V+
Sbjct: 161 TGEGVQD 167
Score = 41.8 bits (99), Expect = 9e-05
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKT+L+ + + + T G F K+ ++ + +L +WD GQ + R SY
Sbjct: 28 GKTTLLKQLASEDISHI-TPTQG--FNIKS--VQSQGFKLNVWDIGGQRKIRPYWRSYFE 82
Query: 108 DSTVAVVVYD 117
++ + + V D
Sbjct: 83 NTDILIYVID 92
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 46.5 bits (111), Expect = 3e-06
Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 9/127 (7%)
Query: 216 FIETSAKAGYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 270
+ T G N++ + ++WD GQ R Y D+ + V D T+ +
Sbjct: 47 VVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMG 106
Query: 271 QTSKWIDDV-RTERGSDVIIMLVGNKTDLSD---KRQVSTEEGERKAKELNVMFIETSAK 326
+ + + ++++ NK DL D + +++ + G +++S+K
Sbjct: 107 VAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSK 166
Query: 327 AGYNVKQ 333
G + +
Sbjct: 167 TGDGLVE 173
Score = 42.2 bits (100), Expect = 7e-05
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKTS++ R T T+G +T L+ + + ++WD GQ R Y
Sbjct: 34 GKTSILYRLHLGDVVTT-VPTVG--VNLET--LQYKNISFEVWDLGGQTGVRPYWRCYFS 88
Query: 108 DSTVAVVVYDITNANSFHQT 127
D+ + V D T+ +
Sbjct: 89 DTDAVIYVVDSTDRDRMGVA 108
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 45.7 bits (109), Expect = 4e-06
Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 9/127 (7%)
Query: 216 FIETSAKAGYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 270
+ TS G NV+++ R +WD GQE RS +Y ++ +VV D T+
Sbjct: 46 VVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERIS 105
Query: 271 QTSKWIDDV-RTERGSDVIIMLVGNKTDLSD---KRQVSTEEGERKAKELNVMFIETSAK 326
T + + + E +++ NK D+ + ++S K+ A
Sbjct: 106 VTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCAL 165
Query: 327 AGYNVKQ 333
G + Q
Sbjct: 166 TGEGLCQ 172
Score = 40.7 bits (96), Expect = 2e-04
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKT+++ +F + +T TIG + + R +WD GQE RS +Y
Sbjct: 33 GKTTILYQFSMNEVVHT-SPTIG--SNVEE--IVINNTRFLMWDIGGQESLRSSWNTYYT 87
Query: 108 DSTVAVVVYD 117
++ +VV D
Sbjct: 88 NTEFVIVVVD 97
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 45.8 bits (108), Expect = 9e-06
Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 16/141 (11%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDST-----VAVVVYDITNANSFHQTSKWIDDVR 280
+ + L LWD GQ+ F + +D V + V+D+ + + ++
Sbjct: 48 FLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALK 107
Query: 281 TER--GSDVIIMLVGNKTDL--SDKRQVSTEEGERKAKEL-------NVMFIETSAKAGY 329
R D I ++ +K DL DKR+ + + E N++ TS
Sbjct: 108 QLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDES 167
Query: 330 NVKQLFRRVAAALPGMDSTEN 350
K + V + +P M + ++
Sbjct: 168 LYKAWSQIVCSLIPNMSNHQS 188
Score = 44.2 bits (104), Expect = 4e-05
Identities = 23/134 (17%), Positives = 45/134 (33%), Gaps = 29/134 (21%)
Query: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
PL KL+ +G GK+S + ++ ++ + ATI
Sbjct: 1 PLGS-KLLLMGRSGSGKSS-MRSIIFSNYSAFDTRRL-------------------GATI 39
Query: 70 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST-----VAVVVYDITNANSF 124
++ + L LWD GQ+ F + +D V + V+D+ +
Sbjct: 40 DVEHSHLRF---LGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVL 96
Query: 125 HQTSKWIDDVRTER 138
+ ++ R
Sbjct: 97 KDIEIFAKALKQLR 110
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 44.0 bits (104), Expect = 2e-05
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKTSL+T DS T + LS Y + L D G + R + Y++
Sbjct: 60 GKTSLLTLLTTDSVRPT-VVSQE--PLSAADY---DGSGVTLVDFPGHVKLRYKLSDYLK 113
Query: 108 DSTVAV--VVYDI 118
V +++ +
Sbjct: 114 TRAKFVKGLIFMV 126
Score = 41.3 bits (97), Expect = 2e-04
Identities = 12/84 (14%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAV--VVYDI---TNANSFHQTSKWIDDV- 279
+ + L D G + R + Y++ V +++ + + T++++ D+
Sbjct: 87 DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDIL 146
Query: 280 ---RTERGSDVIIMLVGNKTDLSD 300
+ + + I++ NK++L
Sbjct: 147 SITESSCENGIDILIACNKSELFT 170
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 42.8 bits (101), Expect = 5e-05
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKTSL+T DS T + LS Y + L D G + R + Y++
Sbjct: 24 GKTSLLTLLTTDSVRPT-VVSQE--PLSAADY---DGSGVTLVDFPGHVKLRYKLSDYLK 77
Query: 108 DSTVAV--VVYDI 118
V +++ +
Sbjct: 78 TRAKFVKGLIFMV 90
Score = 39.7 bits (93), Expect = 5e-04
Identities = 12/84 (14%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAV--VVYDI---TNANSFHQTSKWIDDV- 279
+ + L D G + R + Y++ V +++ + + T++++ D+
Sbjct: 51 DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDIL 110
Query: 280 ---RTERGSDVIIMLVGNKTDLSD 300
+ + + I++ NK++L
Sbjct: 111 SITESSCENGIDILIACNKSELFT 134
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 42.4 bits (100), Expect = 8e-05
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTM-YLEDRTVRLQLWDTAGQERFRSLIPSYI 106
GKT L R + + +T Q +I S +R L L D G E R +
Sbjct: 19 GKTLLFVRLLTGQYRDT-QTSIT--DSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRF 75
Query: 107 RDSTVAVV 114
+ S AVV
Sbjct: 76 KSSARAVV 83
Score = 34.3 bits (79), Expect = 0.035
Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 22/99 (22%)
Query: 213 NVMFIETSAKAGYNVKQVRLQLWDTAGQERFR-SLIPSYIRDSTVAVVVYDITNANSFHQ 271
+ + + N + L L D G E R L+ + + V V D
Sbjct: 42 SSAIYKVN-----NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAA------ 90
Query: 272 TSKWIDDVR---------TERGSDVIIMLV-GNKTDLSD 300
+ + DV + + +L+ NK D++
Sbjct: 91 FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 129
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 41.9 bits (98), Expect = 9e-05
Identities = 18/112 (16%), Positives = 32/112 (28%), Gaps = 26/112 (23%)
Query: 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
K +++ +G + GK+S+ + ++T I
Sbjct: 19 SKPRILLMGLRRSGKSSIQKVVFHK-----MSPNET---------------LFLESTNKI 58
Query: 72 DFLSKTMYLEDRTVRLQLWDTAGQERFRSL---IPSYIRDSTVAVVVYDITN 120
K V Q+WD GQ F R + + V D +
Sbjct: 59 Y---KDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQD 107
Score = 40.0 bits (93), Expect = 5e-04
Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 230 VRLQLWDTAGQERFRSL---IPSYIRDSTVAVVVYDITNA--NSFHQTSKWIDDVRTERG 284
V Q+WD GQ F R + + V D + + + + +
Sbjct: 69 VNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAY-KVN 127
Query: 285 SDVIIMLVGNKTDL--SDKRQVSTEEGERKAKE 315
D+ + +K D D + + + ++A +
Sbjct: 128 PDMNFEVFIHKVDGLSDDHKIETQRDIHQRAND 160
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 41.5 bits (98), Expect = 1e-04
Identities = 14/83 (16%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 224 GYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 278
+++ +D G + R + +Y+ V + D + ++ + +D
Sbjct: 58 HPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDS 117
Query: 279 V-RTERGSDVIIMLVGNKTDLSD 300
+ E ++V I+++GNK D +
Sbjct: 118 LMTDETIANVPILILGNKIDRPE 140
Score = 40.3 bits (95), Expect = 3e-04
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKT+L+ D T+ S+ L + +D G + R + +Y+
Sbjct: 37 GKTTLLHMLKDDRLGQH-VPTLH--PTSEE--LTIAGMTFTTFDLGGHIQARRVWKNYLP 91
Query: 108 DSTVAVVVYD 117
V + D
Sbjct: 92 AINGIVFLVD 101
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 42.1 bits (100), Expect = 2e-04
Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 17/135 (12%)
Query: 226 NVKQVRLQLWDTAGQ-------ERF---RSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 275
+ +L DTAG E RS + ++ + + + D+ + ++
Sbjct: 277 IHDKTMFRLTDTAGLREAGEEIEHEGIRRSR--MKMAEADLILYLLDLGTERLDDELTEI 334
Query: 276 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
+ + + V NK D + + A I SA G + L
Sbjct: 335 RELKAAHPAAKFLT--VANKLDRAAN---ADALIRAIADGTGTEVIGISALNGDGIDTLK 389
Query: 336 RRVAAALPGMDSTEN 350
+ + + +D
Sbjct: 390 QHMGDLVKNLDKLHE 404
Score = 34.1 bits (79), Expect = 0.070
Identities = 10/63 (15%), Positives = 17/63 (26%), Gaps = 3/63 (4%)
Query: 178 ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDT 237
+ V NK D + + A I SA G + ++ + D
Sbjct: 339 AAHPAAKFLTVANKLDRAAN---ADALIRAIADGTGTEVIGISALNGDGIDTLKQHMGDL 395
Query: 238 AGQ 240
Sbjct: 396 VKN 398
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 41.4 bits (97), Expect = 2e-04
Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 9/119 (7%)
Query: 224 GYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 278
G+NV+ V +WD GQ++ R L Y +++ + V D + ++ + +
Sbjct: 198 GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMR 257
Query: 279 V-RTERGSDVIIMLVGNKTDLSD---KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333
+ + D ++++ NK DL + +++ + G + N T A +G + +
Sbjct: 258 MLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 316
Score = 35.2 bits (81), Expect = 0.026
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 47 VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
GKT+++ + T TIG F +T +E + + +WD GQ++ R L Y
Sbjct: 176 AGKTTILYKLKLGEIVTT-IPTIG--FNVET--VEYKNISFTVWDVGGQDKIRPLWRHYF 230
Query: 107 RDSTVAVVVYD 117
+++ + V D
Sbjct: 231 QNTQGLIFVVD 241
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 39.9 bits (94), Expect = 5e-04
Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 224 GYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 278
+++ + +D G + R L Y + V + D + F + +D
Sbjct: 56 HPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDA 115
Query: 279 V-RTERGSDVIIMLVGNKTDLSD 300
+ DV +++GNK D +
Sbjct: 116 LFNIAELKDVPFVILGNKIDAPN 138
Score = 39.5 bits (93), Expect = 5e-04
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKT+L+ D Q T S+ L ++ +D G + R L Y
Sbjct: 35 GKTTLLHMLKNDRLATL-QPTWH--PTSEE--LAIGNIKFTTFDLGGHIQARRLWKDYFP 89
Query: 108 DSTVAVVVYD 117
+ V + D
Sbjct: 90 EVNGIVFLVD 99
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 39.9 bits (93), Expect = 0.001
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 216 FIETSAKAGYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 270
+ T G+NV+ V + +WD GQ++ R L Y + + V D + +
Sbjct: 347 SVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRID 406
Query: 271 QTSKWIDDV-RTERGSDVIIMLVGNKTDL 298
+ + + + D II++ NK DL
Sbjct: 407 EARQELHRIINDREMRDAIILIFANKQDL 435
Score = 34.9 bits (80), Expect = 0.035
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 48 GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
GKT+++ + T T+G F +T + + V+ +WD GQ++ R L Y
Sbjct: 334 GKTTILYKLKLGQSVTT-IPTVG--FNVET--VTYKNVKFNVWDVGGQDKIRPLWRHYYT 388
Query: 108 DSTVAVVVYD 117
+ + V D
Sbjct: 389 GTQGLIFVVD 398
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 38.2 bits (89), Expect = 0.002
Identities = 13/90 (14%), Positives = 34/90 (37%), Gaps = 7/90 (7%)
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGE-----RKAKELNVMFIETSAKAGYNVKQVRLQLW 235
S+ I++ NK D + +S + + + F S G V+Q ++
Sbjct: 141 SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITAC 200
Query: 236 DTAGQERFRSLIPSYIRDSTVAVVVYDITN 265
+ ++ S++ ++ + + + N
Sbjct: 201 ELLKNDQAESIL--LDQEQLLNTKLGETKN 228
Score = 33.2 bits (76), Expect = 0.091
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGE-----RKAKELNVMFIETSAKAGYNVKQLFRRVA 339
S+ I++ NK D + +S + + + F S G V+Q
Sbjct: 141 SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITAC 200
Query: 340 AAL 342
L
Sbjct: 201 ELL 203
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 38.7 bits (90), Expect = 0.002
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWD 236
D+ ++V NK D++D+ + E K K LN + I SA G + V+ ++
Sbjct: 279 KDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKI--SALKGTGIDLVKEEIIK 332
Score = 37.5 bits (87), Expect = 0.005
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL-P 343
D+ ++V NK D++D+ + E K K LN + I SA G + + + L P
Sbjct: 279 KDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKI--SALKGTGIDLVKEEIIKTLRP 336
Query: 344 GMDSTENKPPED 355
+ + E
Sbjct: 337 LAEKVAREKIER 348
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 38.9 bits (91), Expect = 0.002
Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 6/86 (6%)
Query: 258 VVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN 317
+ +T++ ++ + E + +V NK D+ ++ + E
Sbjct: 116 CGIL-VTDSAPTPYEDDVVNLFK-EMEIPFV--VVVNKIDVLGEKAEELKGLYESRYEAK 171
Query: 318 VMFIETSAKAGYNVKQLFRRVAAALP 343
V + SA + + ++ LP
Sbjct: 172 V--LLVSALQKKGFDDIGKTISEILP 195
Score = 30.8 bits (70), Expect = 0.67
Identities = 12/94 (12%), Positives = 30/94 (31%), Gaps = 5/94 (5%)
Query: 170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 229
++ + E + +V NK D+ ++ + E V + SA
Sbjct: 131 DVVNLFK-EMEIPFV--VVVNKIDVLGEKAEELKGLYESRYEAKV--LLVSALQKKGFDD 185
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
+ + + + + I + ++V I
Sbjct: 186 IGKTISEILPGDEEIPYLGDLIDGGDLVILVVPI 219
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 37.1 bits (87), Expect = 0.003
Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 20/119 (16%)
Query: 226 NVKQVRLQLWDTAGQ-------ERF---RSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 275
++ + L + DTAG ER R+ I + + + D T ++ W
Sbjct: 48 HIDGMPLHIIDTAGLREASDEVERIGIERAW--QEIEQADRVLFMVDGTTTDAVDPAEIW 105
Query: 276 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 334
+ + + I +V NK D++ + +E I SA+ G V L
Sbjct: 106 -PEFIARLPAKLPITVVRNKADITGETLGMSEVNGHA-------LIRLSARTGEGVDVL 156
Score = 33.3 bits (77), Expect = 0.059
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVR 231
+ + + I +V NK D++ + +E I SA+ G V +R
Sbjct: 105 WPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHA-------LIRLSARTGEGVDVLR 157
Query: 232 LQLWDTAG 239
L + G
Sbjct: 158 NHLKQSMG 165
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 37.4 bits (88), Expect = 0.004
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 274 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333
+ + V I+LVGNK D + + + + E + SA V +
Sbjct: 105 ELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRML--SALDERQVAE 162
Query: 334 LFRRVAAALP 343
L + A +P
Sbjct: 163 LKADLLALMP 172
Score = 28.6 bits (65), Expect = 3.0
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 229
+ + V I+LVGNK D + + + + E + SA V +
Sbjct: 105 ELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRML--SALDERQVAE 162
Query: 230 VR 231
++
Sbjct: 163 LK 164
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 37.6 bits (87), Expect = 0.005
Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 12/105 (11%)
Query: 240 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS 299
+ F ++ + + V + DI + N S R + V+ LVGNK DL
Sbjct: 56 DDDFLRILNGIGKSDALVVKIVDIFDFNG----SWLPGLHRFVGNNKVL--LVGNKADLI 109
Query: 300 DKRQVSTE-----EGERKAKELNVMFI-ETSAKAGYNVKQLFRRV 338
K + K L + SA G + +L +
Sbjct: 110 PKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAI 154
Score = 29.9 bits (67), Expect = 1.3
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 185 IMLVGNKTDLSDKRQVSTE-----EGERKAKELNVMFI-ETSAKAGYNVKQV 230
++LVGNK DL K + K L + SA G + ++
Sbjct: 99 VLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAEL 150
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 37.5 bits (88), Expect = 0.005
Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 26/138 (18%)
Query: 226 NVKQVRLQLWDTAGQ--------ERF---RSLIPSYIRDSTVAVVVYDITNANSFHQTSK 274
++ + ++ DTAG ER R+L I + + + V D +S
Sbjct: 287 VIRGILFRIVDTAGVRSETNDLVERLGIERTL--QEIEKADIVLFVLD--------ASSP 336
Query: 275 WIDDVRT--ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 332
++ R ER + ++V NK D+ +K EE + + ++ SA G ++
Sbjct: 337 LDEEDRKILERIKNKRYLVVINKVDVVEK---INEEEIKNKLGTDRHMVKISALKGEGLE 393
Query: 333 QLFRRVAAALPGMDSTEN 350
+L + + +
Sbjct: 394 KLEESIYRETQEIFERGS 411
Score = 32.1 bits (74), Expect = 0.28
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 178 ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDT 237
ER + ++V NK D+ +K EE + + ++ SA G ++++ ++
Sbjct: 346 ERIKNKRYLVVINKVDVVEK---INEEEIKNKLGTDRHMVKISALKGEGLEKLEESIYRE 402
Query: 238 AG 239
Sbjct: 403 TQ 404
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 37.2 bits (87), Expect = 0.005
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTEN 350
+V NK D+ + + E+ + V I SA +++L VA L
Sbjct: 279 IVANKMDMPEAAENLEAFKEKLTDDYPVFPI--SAVTREGLRELLFEVANQLENTPEFPL 336
Query: 351 KPPED 355
E+
Sbjct: 337 YDEEE 341
Score = 31.0 bits (71), Expect = 0.59
Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 187 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWD 236
+V NK D+ + + E+ + V I SA ++++ ++ +
Sbjct: 279 IVANKMDMPEAAENLEAFKEKLTDDYPVFPI--SAVTREGLRELLFEVAN 326
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 34.8 bits (81), Expect = 0.031
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTEN 350
+ NK DL ++ V + L V+ + SA G + L + A + E
Sbjct: 274 VALNKVDLLEEEAVKALADALAREGLAVLPV--SALTGAGLPALKEALHALVRSTPPPEM 331
Query: 351 KPPE 354
P
Sbjct: 332 PKPV 335
Score = 30.6 bits (70), Expect = 0.87
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 187 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWD 236
+ NK DL ++ V + L V+ + SA G + ++ L
Sbjct: 274 VALNKVDLLEEEAVKALADALAREGLAVLPV--SALTGAGLPALKEALHA 321
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 34.4 bits (80), Expect = 0.046
Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 26/121 (21%)
Query: 226 NVKQVRLQLWDTAGQ-------ERF---RSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 275
V + +Q+ DTAG E+ RS + + ++ D + W
Sbjct: 268 VVGGIPVQVLDTAGIRETSDQVEKIGVERSR--QAANTADLVLLTID--------AATGW 317
Query: 276 IDDVRT--ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333
+ E+ ++LV NK DL +K+ +++ E ++ + T+A +
Sbjct: 318 TTGDQEIYEQVKHRPLILVMNKIDLVEKQLITSLEYPENITQI----VHTAAAQKQGIDS 373
Query: 334 L 334
L
Sbjct: 374 L 374
Score = 32.1 bits (74), Expect = 0.29
Identities = 10/61 (16%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 185 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFR 244
++LV NK DL +K+ +++ E ++ + T+A + + + + + +
Sbjct: 333 LILVMNKIDLVEKQLITSLEYPENITQI----VHTAAAQKQGIDSLETAILEIVQTGKVQ 388
Query: 245 S 245
+
Sbjct: 389 A 389
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 33.2 bits (77), Expect = 0.12
Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Query: 256 VAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL-SDKRQVSTEEGERKAK 314
V +V++ + + + + + E + VI L NK D +K + ++
Sbjct: 89 VELVIF-VVEGTRWTPDDEMVLNKLREGKAPVI--LAVNKVDNVQEKADLLPHLQFLASQ 145
Query: 315 ELNVMFIETSAKAGYNVKQLFRRVAAALP 343
+ + SA+ G NV + V LP
Sbjct: 146 MNFLDIVPISAETGLNVDTIAAIVRKHLP 174
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 32.7 bits (74), Expect = 0.17
Identities = 12/108 (11%), Positives = 31/108 (28%), Gaps = 28/108 (25%)
Query: 16 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLS 75
++ +G + GK+S I + ++ + + ++T
Sbjct: 2 VLLMGVRRCGKSS-ICKVVFHNMQPLDTLYL-------------------ESTSNPSLEH 41
Query: 76 KTMYLEDRTVRLQLWDTAGQERFRSL---IPSYIRDSTVAVVVYDITN 120
+ + L + + GQ + + V V D +
Sbjct: 42 FSTL-----IDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQD 84
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 32.4 bits (75), Expect = 0.18
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELN--VMFIETSAKAGYNVKQLFRRVAAALP 343
+++V NK D + + K+ + SA G N+ +L + + LP
Sbjct: 125 VIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLP 181
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 32.6 bits (74), Expect = 0.18
Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 12/103 (11%)
Query: 241 ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 300
+ F S++ + V + DI + N S R + ++ LVGNK DL
Sbjct: 59 DDFLSMLHRIGESKALVVNIVDIFDFNG----SFIPGLPRFAADNPIL--LVGNKADLLP 112
Query: 301 KRQVSTEEGE---RKAKELNVMFIE---TSAKAGYNVKQLFRR 337
+ + R A+EL + ++ SA G + ++
Sbjct: 113 RSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEA 155
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 31.0 bits (71), Expect = 0.44
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 179 RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN--VMFIETSAKAGYNVKQV------ 230
R +D+I++ NK L++ E+ + AK +N IE K G ++
Sbjct: 154 RVADLIVI---NKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRG 210
Query: 231 RLQLWDTAGQ 240
L + +GQ
Sbjct: 211 ILNVHSDSGQ 220
Score = 29.9 bits (68), Expect = 1.0
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 283 RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN--VMFIETSAKAGYNVKQLFRRVAA 340
R +D+I++ NK L++ E+ + AK +N IE K G ++ +
Sbjct: 154 RVADLIVI---NKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRG 210
Query: 341 AL 342
L
Sbjct: 211 IL 212
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 30.3 bits (69), Expect = 0.76
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 179 RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN--VMFIETSAKAGYNVKQV 230
+ +D+I++ NK DL+D ++ E AK +N + S K +V
Sbjct: 164 KTADLIVI---NKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKV 214
Score = 29.9 bits (68), Expect = 0.99
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 283 RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN--VMFIETSAKAG 328
+ +D+I++ NK DL+D ++ E AK +N + S K
Sbjct: 164 KTADLIVI---NKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTM 208
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport, transmembrane;
HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Length = 188
Score = 29.4 bits (67), Expect = 1.2
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 282 ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 341
E G+++++ L NK DL+ + + ++ K L V + SA +++L + ++ A
Sbjct: 110 EMGANLLLAL--NKMDLAKSLGIEIDV-DKLEKILGVKVVPLSAAKKMGIEELKKAISIA 166
Query: 342 LPGMDSTENKPPE 354
+ + E K P
Sbjct: 167 VKDKKTAEIKYPN 179
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 29.6 bits (67), Expect = 1.3
Identities = 8/54 (14%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
+++ NK D +D T++ + + + + ++ G + Q+ L
Sbjct: 54 IMLLNKADKADAAV--TQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQ 105
Score = 28.8 bits (65), Expect = 2.4
Identities = 12/81 (14%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 186 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRS 245
+++ NK D +D T++ + + + + ++ G + Q+ + QE+F
Sbjct: 54 IMLLNKADKADAAV--TQQWKEHFENQGIRSLSINSVNGQGLNQI-VPASKEILQEKFDR 110
Query: 246 LIPSYIRDSTVAVVVYDITNA 266
+ ++ + ++ I N
Sbjct: 111 MRAKGVKPRAIRALIIGIPNV 131
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell
membrane, ION transport, transmembrane; HET: GNP; 1.90A
{Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Length = 165
Score = 29.0 bits (66), Expect = 1.4
Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 282 ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 341
E G+++++ L NK DL+ + + ++ K L V + SA +++L + ++ A
Sbjct: 106 EMGANLLLAL--NKMDLAKSLGIEIDV-DKLEKILGVKVVPLSAAKKMGIEELKKAISIA 162
Query: 342 L 342
+
Sbjct: 163 V 163
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 29.2 bits (66), Expect = 1.9
Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Query: 178 ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDT 237
E G V I L N D+ D + ++ + L V + TSA V QV + T
Sbjct: 105 ETGIPVTIAL--NMIDVLDGQGKKINV-DKLSYHLGVPVVATSALKQTGVDQVVKKAAHT 161
Query: 238 AGQERFRSLIPSY 250
P Y
Sbjct: 162 TTSTVGDLAFPIY 174
Score = 28.8 bits (65), Expect = 2.4
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 282 ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 341
E G V I L N D+ D + ++ + L V + TSA V Q+ ++ A
Sbjct: 105 ETGIPVTIAL--NMIDVLDGQGKKINV-DKLSYHLGVPVVATSALKQTGVDQVVKKAAHT 161
Query: 342 LPGMDSTENKP 352
P
Sbjct: 162 TTSTVGDLAFP 172
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 28.6 bits (63), Expect = 3.4
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 24/104 (23%)
Query: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
+F L+ +GE +GK++LI ++ T L + + T+ I+
Sbjct: 18 EFTLMVVGESGLGKSTLIN-------------SLFL-TDLYPERVISGAAEKIERTVQIE 63
Query: 73 FLSKTMYLEDRTVRLQL--WDTAGQERFRSL------IPSYIRD 108
+ T+ +E+R V+L+L DT G + I SYI +
Sbjct: 64 --ASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDE 105
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate
binding, protein structure, trehalose repressor, gene
regulation; HET: T6P; 2.50A {Escherichia coli} SCOP:
c.93.1.1
Length = 255
Score = 28.2 bits (64), Expect = 3.4
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 110 TVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIM 145
VA++V + + S + + + E+G D I+M
Sbjct: 4 VVAIIVTRLDS-LSENLAVQTMLPAFYEQGYDPIMM 38
Score = 28.2 bits (64), Expect = 3.4
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 255 TVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIM 290
VA++V + + S + + + E+G D I+M
Sbjct: 4 VVAIIVTRLDS-LSENLAVQTMLPAFYEQGYDPIMM 38
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase,
G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima}
PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 28.0 bits (63), Expect = 4.2
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 282 ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 341
E VI+ + D + K + + K L + + TS+ G +++L ++
Sbjct: 108 EMEKKVILAM--TAIDEAKKTGMKIDR-YELQKHLGIPVVFTSSVTGEGLEELKEKIVEY 164
Query: 342 LPG 344
Sbjct: 165 AQK 167
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 27.9 bits (62), Expect = 4.5
Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 11/115 (9%)
Query: 226 NVKQVRLQLWDTAG-------QERFRSLIPSYIRDSTVAVVVY--DITNANSFHQTSKWI 276
+ + + DT G + LI ++ + T+ V++Y + + +
Sbjct: 80 TMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVV 139
Query: 277 DDVRTERGSDVI--IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 329
+ G ++ +LV S ++S E K + + I +K
Sbjct: 140 IAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRK 194
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 27.8 bits (61), Expect = 6.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 13 KFKLVFLGEQSVGKTSLI 30
K ++ G+ S GKTS I
Sbjct: 65 KPMVLVAGQYSTGKTSFI 82
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 27.3 bits (61), Expect = 7.7
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
+I++L NK DL K+ + ++ KEL V I T+AK G V++L R +A G
Sbjct: 112 IILVL--NKFDLLKKKGAKIDI-KKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEG 166
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION transport,
membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 27.3 bits (61), Expect = 8.2
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 282 ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 341
E G I+ L N D+++K+ + E + + L I + G ++ L +
Sbjct: 110 ELGIPCIVAL--NMLDIAEKQNIRIEI-DALSARLGCPVIPLVSTRGRGIEALKLAIDRY 166
Query: 342 LPG 344
Sbjct: 167 KAN 169
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component;
rieske center, oxygen binding/activation, substrate
bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2
d.129.3.3 PDB: 1z02_A 1z03_A*
Length = 446
Score = 27.4 bits (60), Expect = 8.6
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 154 FTHLSFHHANSFHQTSKWIDDVRTERGSDVII 185
H+ H N+ W+ + SD I
Sbjct: 219 NAHILVHKDNTIVHAMDWVLPLGLLPTSDDCI 250
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.372
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,174,883
Number of extensions: 299191
Number of successful extensions: 1385
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1024
Number of HSP's successfully gapped: 374
Length of query: 355
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 260
Effective length of database: 4,049,298
Effective search space: 1052817480
Effective search space used: 1052817480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)