BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15726
(171 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DIC|A Chain A, Solution Structure Of The 12th Filamin Domain From Human
Filamin-B
Length = 105
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 57 GLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTTT 116
G GL +A + N FT+ T G + V P + + C K + AE+ P
Sbjct: 18 GPGLKEAFTNKPNVFTVVTRGAGIGGLGITVEGPSESKI--NCRDNKDGSCSAEYIPFAP 75
Query: 117 GVYKIDVLQGARPVRGSPYLCQVYD 141
G Y +++ G + GSP+ V D
Sbjct: 76 GDYDVNITYGGAHIPGSPFRVPVKD 100
>pdb|2DJ4|A Chain A, Solution Structure Of The 13th Filamin Domain From Human
Filamin-B
Length = 108
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 44 VVDPAVGREPSGSGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQK 103
VVDP+ + +G GLG R+ ++ SFT+++ + +V V P+G PV
Sbjct: 8 VVDPSKVKI-AGPGLG-SGVRARVLQSFTVDSSKAGLAPLEVRVLGPRGLVEPVNVVDNG 65
Query: 104 FANLLAEFTPTTTGVYKIDVLQGARPVRGSPYLCQV---YDAS 143
+TP+ G Y + V + SP+ +V YDAS
Sbjct: 66 DGTHTVTYTPSQEGPYMVSVKYADEEIPRSPFKVKVLPTYDAS 108
>pdb|3RGH|A Chain A, Structure Of Filamin A Immunoglobulin-Like Repeat 10 From
Homo Sapiens
pdb|3RGH|B Chain B, Structure Of Filamin A Immunoglobulin-Like Repeat 10 From
Homo Sapiens
Length = 100
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 56 SGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFT--P 113
SG GL +A +G V F ++ S+E + + S G +P Y Q + T P
Sbjct: 14 SGPGLERATAGEVGQFQVDCSSAGSAELTIEIXSEAG--LPAEVYIQDHGDGTHTITYIP 71
Query: 114 TTTGVYKIDVLQGARPVRGSPYLCQV 139
G Y + + G +PV P QV
Sbjct: 72 LCPGAYTVTIKYGGQPVPNFPSKLQV 97
>pdb|2EEA|A Chain A, Solution Structure Of The 17th Filamin Domain From Human
Filamin-B
Length = 115
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Query: 54 SGSGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTP 113
S G GL + +FT+ T D+ + P A + C K + P
Sbjct: 25 SAYGPGLVYGVANKTATFTIVTEDAGEGGLDLAIEGPSKAEI--SCIDNKDGTCTVTYLP 82
Query: 114 TTTGVYKIDVLQGARPVRGSPYLCQVYDASK 144
T G Y I V + + GSP+ ++ D S+
Sbjct: 83 TLPGDYSILVKYNDKHIPGSPFTAKITDDSR 113
>pdb|2EEB|A Chain A, Solution Structure Of The 22th Filamin Domain From Human
Filamin-B
Length = 106
Score = 32.7 bits (73), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 70 SFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTTTGVYKIDVLQGARP 129
SF + G A + D V SP GA + + F P GV+ IDV
Sbjct: 31 SFAIRLNG-AKGKIDAKVHSPSGAVEECHVSELEPDKYAVRFIPHENGVHTIDVKFNGSH 89
Query: 130 VRGSPYLCQV 139
V GSP+ +V
Sbjct: 90 VVGSPFKVRV 99
>pdb|2DS4|A Chain A, Solution Structure Of The Filamin Domain From Human
Tripartite Motif Protein 45
Length = 113
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 57 GLGLYQARSGIVNSFTL-------ETCGVASSEFDVIVTSPQGAAVPVRCYQQ--KFANL 107
G L++AR SFTL E G V V PVR Q K
Sbjct: 18 GEDLHRAREKQTASFTLLCKDAAGEIMGRGGDNVQVAVVPKDKKDSPVRTMVQDNKDGTY 77
Query: 108 LAEFTPTTTGVYKIDVLQGARPVRGSPYLCQV 139
+TP GVY + V + V+GSP+ V
Sbjct: 78 YISYTPKEPGVYTVWVCIKEQHVQGSPFTVTV 109
>pdb|4B7L|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain
With 1st Filamin Repeat
pdb|4B7L|B Chain B, Crystal Structure Of Human Filamin B Actin Binding Domain
With 1st Filamin Repeat
Length = 347
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 71 FTLETCGVASSEFDVIVTSPQG--AAVPVRCYQQKFANLLAEFTPTTTGVYKIDVLQGAR 128
FT++T + V V P+G V K E+ P TG++K+ VL +
Sbjct: 277 FTVDTISAGQGDVMVFVEDPEGNKEEAQVTPDSDKNKTYSVEYLPKVTGLHKVTVLFAGQ 336
Query: 129 PVRGSPYLCQV 139
+ SP+ V
Sbjct: 337 HISKSPFEVSV 347
>pdb|2K7Q|A Chain A, Filamin A Ig-Like Domains 18-19
Length = 191
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 87 VTSPQGAAVPVRCYQQKFANLLAEFTPTTTGVYKIDVLQGARPVRGSPY-----LCQVYD 141
V P G P + + ++ F P TG + + V + + V SP ++ D
Sbjct: 37 VVPPSGREEPCLLKRLRNGHVGISFVPKETGEHLVHVKKNGQHVASSPIPVVISQSEIGD 96
Query: 142 ASKVKIEHKGLSNIVVNDPISF 163
AS+V++ +GL +P F
Sbjct: 97 ASRVRVSGQGLHEGHTFEPAEF 118
Score = 26.2 bits (56), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Query: 56 SGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTT 115
SG GL++ + F ++T + + P + V + + + PT
Sbjct: 103 SGQGLHEGHTFEPAEFIIDTRDAGYGGLSLSIEGP--SKVDINTEDLEDGTCRVTYCPTE 160
Query: 116 TGVYKIDVLQGARPVRGSPYLCQVYDASKVK 146
G Y I++ + V GSP+ +V +VK
Sbjct: 161 PGNYIINIKFADQHVPGSPFSVKVTGEGRVK 191
>pdb|2D7P|A Chain A, Solution Structure Of The 22th Filamin Domain From Human
Filamin C
Length = 112
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 70 SFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTTTGVYKIDVLQGARP 129
SF ++ G A D V +P GA + F P GV+ IDV
Sbjct: 31 SFAVQLNG-ARGVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGAH 89
Query: 130 VRGSPYLCQVYDASK 144
+ GSP+ +V + S+
Sbjct: 90 IPGSPFKIRVGEQSQ 104
>pdb|2D7O|A Chain A, Solution Structure Of The 17th Filamin Domain From Human
Filamin C
Length = 111
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
Query: 51 REPSGSGLGLYQARSGIVN---SFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANL 107
R S G GL G+VN +FT+ T + V P A + C K
Sbjct: 12 RHVSAYGPGLSH---GMVNKPATFTIVTKDAGEGGLSLAVEGPSKAEI--TCKDNKDGTC 66
Query: 108 LAEFTPTTTGVYKIDVLQGARPVRGSPYLCQV 139
+ PT G Y I V + + GSP+ ++
Sbjct: 67 TVSYLPTAPGDYSIIVRFDDKHIPGSPFTAKI 98
>pdb|1C1Z|A Chain A, Crystal Structure Of Human Beta-2-Glycoprotein-I
(Apolipoprotein-H)
Length = 326
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 139 VYDASKVKIEHKGLSNIVVNDPISFKCKSTEE 170
VY +VKI+ K + ++ D +SF CK+ E+
Sbjct: 255 VYQGERVKIQEKFKNGMLHGDKVSFFCKNKEK 286
>pdb|1QUB|A Chain A, Crystal Structure Of The Glycosylated Five-domain Human
Beta2- Glycoprotein I Purified From Blood Plasma
Length = 319
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 139 VYDASKVKIEHKGLSNIVVNDPISFKCKSTEE 170
VY +VKI+ K + ++ D +SF CK+ E+
Sbjct: 255 VYQGERVKIQEKFKNGMLHGDKVSFFCKNKEK 286
>pdb|2DLG|A Chain A, Solution Structure Of The 20th Filamin Domain From Human
Filamin-B
Length = 102
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 7/86 (8%)
Query: 50 GREPSGSGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLA 109
GR PS A G + L+ + SS+ VTSP G +
Sbjct: 7 GRAPS-------VATVGSICDLNLKIPEINSSDMSAHVTSPSGRVTEAEIVPMGKNSHCV 59
Query: 110 EFTPTTTGVYKIDVLQGARPVRGSPY 135
F P GV+ + V + V GSP+
Sbjct: 60 RFVPQEMGVHTVSVKYRGQHVTGSPF 85
>pdb|2E9I|A Chain A, Solution Structure Of The N-Terminal Extended 20th Filamin
Domain From Human Filamin-B
Length = 106
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 28/73 (38%)
Query: 63 ARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTTTGVYKID 122
A G + L+ + SS+ VTSP G + F P GV+ +
Sbjct: 23 ATVGSICDLNLKIPEINSSDMSAHVTSPSGRVTEAEIVPMGKNSHCVRFVPQEMGVHTVS 82
Query: 123 VLQGARPVRGSPY 135
V + V GSP+
Sbjct: 83 VKYRGQHVTGSPF 95
>pdb|2KRI|A Chain A, Structure Of A Complex Between Domain V Of Beta2-
Glycoprotein I And The Fourth Ligand-Binding Module From
Ldlr Determined With Haddock
pdb|3OP8|A Chain A, Crystal Structure Of The Domain V From Beta2-Glycoprotein
I
pdb|3OP8|B Chain B, Crystal Structure Of The Domain V From Beta2-Glycoprotein
I
Length = 85
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 139 VYDASKVKIEHKGLSNIVVNDPISFKCKSTEE 170
VY +VKI+ K + ++ D +SF CK+ E+
Sbjct: 13 VYQGERVKIQEKFKNGMLHGDKVSFFCKNKEK 44
>pdb|1QFH|A Chain A, Dimerization Of Gelation Factor From Dictyostelium
Discoideum: Crystal Structure Of Rod Domains 5 And 6
pdb|1QFH|B Chain B, Dimerization Of Gelation Factor From Dictyostelium
Discoideum: Crystal Structure Of Rod Domains 5 And 6
Length = 212
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 71 FTLETCGVASSE----FDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTTTGVYKIDVLQG 126
F ++T GVA ++ F+V + P G V + + G Y ++V
Sbjct: 30 FAVDTKGVARTDGGDPFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAPVEGNYNVNVTLR 89
Query: 127 ARPVRGSP 134
P++ P
Sbjct: 90 GNPIKNMP 97
>pdb|2DI8|A Chain A, Solution Structure Of The 19th Filamin Domain From Human
Filamin-B
Length = 111
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Query: 57 GLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTTT 116
G GL + R+ ++ F ++T + V P + V ++ + + PT
Sbjct: 18 GRGLSEGRTFEMSDFIVDTRDAGYGGISLAVEGP--SKVDIQTEDLEDGTCKVSYFPTVP 75
Query: 117 GVYKIDVLQGARPVRGSPYLCQVYDASKVK 146
GVY + V GSP+ ++ +VK
Sbjct: 76 GVYIVSTKFADEHVPGSPFTVKISGEGRVK 105
>pdb|1G4F|A Chain A, Nmr Structure Of The Fifth Domain Of Human Beta2-
Glycoprotein I
pdb|1G4G|A Chain A, Nmr Structure Of The Fifth Domain Of Human Beta2-
Glycoprotein I
Length = 86
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 139 VYDASKVKIEHKGLSNIVVNDPISFKCKSTEE 170
VY +VKI+ K + ++ D +SF CK+ E+
Sbjct: 15 VYQGERVKIQEKFKNGMLHGDKVSFFCKNKEK 46
>pdb|1WLH|A Chain A, Molecular Structure Of The Rod Domain Of Dictyostelium
Filamin
pdb|1WLH|B Chain B, Molecular Structure Of The Rod Domain Of Dictyostelium
Filamin
Length = 311
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 71 FTLETCGVASSE----FDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTTTGVYKIDVLQG 126
F ++T GVA ++ F+V + P G V + + G Y ++V
Sbjct: 129 FAVDTKGVARTDGGDPFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAPVEGNYNVNVTLR 188
Query: 127 ARPVRGSP 134
P++ P
Sbjct: 189 GNPIKNMP 196
>pdb|2J3S|A Chain A, Crystal Structure Of The Human Filamin A Ig Domains 19 To
21
pdb|2J3S|B Chain B, Crystal Structure Of The Human Filamin A Ig Domains 19 To
21
Length = 288
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Query: 56 SGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTT 115
SG GL++ + F ++T + + P + V + + + PT
Sbjct: 12 SGQGLHEGHTFEPAEFIIDTRDAGYGGLSLSIEGP--SKVDINTEDLEDGTCRVTYCPTE 69
Query: 116 TGVYKIDVLQGARPVRGSPYLCQVYDASKVK 146
G Y I++ + V GSP+ +V +VK
Sbjct: 70 PGNYIINIKFADQHVPGSPFSVKVTGEGRVK 100
>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3URH|B Chain B, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 491
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 36 RSCPMEVPVVDPAVGREPSGSGLGLYQARSGIV 68
+ ++ VV A GR+PS GLGL A++G+V
Sbjct: 283 EATTLDAEVVLIATGRKPSTDGLGL--AKAGVV 313
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,927,498
Number of Sequences: 62578
Number of extensions: 192298
Number of successful extensions: 394
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 380
Number of HSP's gapped (non-prelim): 30
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)