RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15726
         (171 letters)



>gnl|CDD|214720 smart00557, IG_FLMN, Filamin-type immunoglobulin domains.  These
           form a rod-like structure in the actin-binding
           cytoskeleton protein, filamin. The C-terminal repeats of
           filamin bind beta1-integrin (CD29).
          Length = 93

 Score = 73.0 bits (180), Expect = 1e-17
 Identities = 29/87 (33%), Positives = 38/87 (43%)

Query: 56  SGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTT 115
           SG GL +   G    FT++T      E +V VT P G  VPV             +TPT 
Sbjct: 7   SGPGLEKGVVGEPAEFTVDTRDAGGGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTE 66

Query: 116 TGVYKIDVLQGARPVRGSPYLCQVYDA 142
            G Y + V  G   + GSP+  +V  A
Sbjct: 67  PGDYTVTVKFGGEHIPGSPFTVKVGPA 93


>gnl|CDD|216033 pfam00630, Filamin, Filamin/ABP280 repeat. 
          Length = 93

 Score = 62.4 bits (152), Expect = 1e-13
 Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 3/83 (3%)

Query: 56  SGLGLYQARSGIVNSFTLET---CGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFT 112
           SG GL     G    FT++T    G   + FDV VT P G+ VPV             +T
Sbjct: 10  SGPGLEGVVVGKPAEFTVDTRDAGGGPVTGFDVEVTGPSGSKVPVEVIDNGDGTYTVSYT 69

Query: 113 PTTTGVYKIDVLQGARPVRGSPY 135
           PT  G Y + V    + + GSP+
Sbjct: 70  PTEPGDYTVSVKFNGQHIPGSPF 92



 Score = 29.6 bits (67), Expect = 0.30
 Identities = 11/26 (42%), Positives = 12/26 (46%)

Query: 139 VYDASKVKIEHKGLSNIVVNDPISFK 164
             D SKVK    GL  +VV  P  F 
Sbjct: 1   AADPSKVKASGPGLEGVVVGKPAEFT 26


>gnl|CDD|212128 cd11663, GH119_BcIgtZ-like, putative catalytic domain of glycoside
           hydrolase family 119 (GH119).  The prokaryotic subgroup
           is represented by IgtZ, an alpha-amylase from a Bacillus
           circulans strain. The GH119 family is related to GH57, a
           chiefly prokaryotic family with the majority of
           thermostable enzymes coming from extremophiles (many of
           these are archaeal hyperthermophiles), which exhibit the
           enzyme specificities of alpha-amylase (EC 3.2.1.1),
           4-alpha-glucanotransferase (EC 2.4.1.25),
           amylopullulanase (EC 3.2.1.1/41), and
           alpha-galactosidase (EC 3.2.1.22). GH57s cleave
           alpha-glycosidic bonds by employing a retaining
           mechanism, which involves a glycosyl-enzyme
           intermediate, allowing transglycosylation.
          Length = 363

 Score = 32.2 bits (73), Expect = 0.10
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 17  SWISYGLV-QARTLREETSFRSCPMEVPVVDPAVGREPSGSGLGLYQARS 65
           SW+S  +  + + +R +  F S P  V  VDPA G E    G+ + QA S
Sbjct: 204 SWVSQPMFNEQQVVRNKYPFASTPHWVRYVDPATGAESRVVGVPVAQAES 253


>gnl|CDD|237602 PRK14081, PRK14081, triple tyrosine motif-containing protein;
           Provisional.
          Length = 667

 Score = 30.8 bits (70), Expect = 0.35
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 19/72 (26%)

Query: 110 EFTPTTTGVYKIDVLQGARPVRGSPYLCQVYDASK-VKIE-HKGL-----------SNIV 156
           +F P  +G Y I+VL  A+ ++ +    + YD+ K VK    + L               
Sbjct: 537 KFIPKCSGKYTIEVL--AKNIKST----EEYDSKKEVKFYVREALPITNTKIKTSKKKFK 590

Query: 157 VNDPISFKCKST 168
            N+ ++F  KS 
Sbjct: 591 CNEEVTFSVKSE 602


>gnl|CDD|185406 PTZ00030, PTZ00030, 60S ribosomal protein L20; Provisional.
          Length = 121

 Score = 28.8 bits (65), Expect = 0.68
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 142 ASKVKIEHKGLSNIVVNDPISFKC 165
            S +++  K L+N+ + +P SFK 
Sbjct: 76  NSNIQLNRKILANLAITEPFSFKA 99


>gnl|CDD|240108 cd04791, LanC_SerThrkinase, Lanthionine synthetase C-like domain
          associated with serine threonine kinases. Some members
          of this subgroup lack the zinc binding site and the
          active site residues, and therefore are most likely
          inactive. The function of this domain is unknown.
          Length = 321

 Score = 28.1 bits (63), Expect = 2.5
 Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 2/30 (6%)

Query: 48 AVGREPSGSGLGLYQARSGIVNSFTLETCG 77
          A  RE SGS  GLY  R+GI     L   G
Sbjct: 30 AATRELSGSPPGLYDGRAGIAW--VLIELG 57


>gnl|CDD|130104 TIGR01032, rplT_bact, ribosomal protein L20.  This model describes
           bacterial ribosomal protein L20 and its chloroplast
           equvalent. This protein binds directly to 23s ribosomal
           RNA and is necessary for the in vitro assembly process
           of the 50s ribosomal subunit. It is not involved in the
           protein synthesizing functions of that subunit. GO
           process changed accordingly (SS 5/09/03) [Protein
           synthesis, Ribosomal proteins: synthesis and
           modification].
          Length = 113

 Score = 27.0 bits (60), Expect = 2.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 143 SKVKIEHKGLSNIVVNDPISFK 164
           + ++I  K LS + +NDP +FK
Sbjct: 85  ANIEINRKVLSELAINDPEAFK 106


>gnl|CDD|233006 TIGR00521, coaBC_dfp, phosphopantothenoylcysteine decarboxylase /
           phosphopantothenate--cysteine ligase.  This model
           represents a bifunctional enzyme that catalyzes the
           second and third steps (cysteine ligation, EC 6.3.2.5,
           and decarboxylation, EC 4.1.1.36) in the biosynthesis of
           coenzyme A (CoA) from pantothenate in bacteria. In early
           descriptions of this flavoprotein, a ts mutation in one
           region of the protein appeared to cause a defect in DNA
           metaobolism rather than an increased need for the
           pantothenate precursor beta-alanine. This protein was
           then called dfp, for DNA/pantothenate metabolism
           flavoprotein. The authors responsible for detecting
           phosphopantothenate--cysteine ligase activity suggest
           renaming this bifunctional protein coaBC for its role in
           CoA biosynthesis. This enzyme contains the FMN cofactor,
           but no FAD or pyruvoyl group. The amino-terminal region
           contains the phosphopantothenoylcysteine decarboxylase
           activity [Biosynthesis of cofactors, prosthetic groups,
           and carriers, Pantothenate and coenzyme A].
          Length = 390

 Score = 27.7 bits (62), Expect = 3.3
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 39/100 (39%)

Query: 83  FDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTTTGVYKI---------------DVLQGA 127
           FD+ +++   AAV             A+F P T    KI               D++   
Sbjct: 266 FDIFISA---AAV-------------ADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEV 309

Query: 128 RPVRGSPYLC--------QVYDASKVKIEHKGLSNIVVND 159
           R ++    +          +   +K K++ K L  IV ND
Sbjct: 310 RKIKKHQVIVGFKAETNDDLIKYAKEKLKKKNLDMIVAND 349


>gnl|CDD|227335 COG5002, VicK, Signal transduction histidine kinase [Signal
           transduction mechanisms].
          Length = 459

 Score = 27.8 bits (62), Expect = 3.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 45  VDPAVGREPSGSGLGLYQARS 65
           VD A  R+  G+GLGL  A+ 
Sbjct: 401 VDKARSRKMGGTGLGLAIAKE 421


>gnl|CDD|201238 pfam00453, Ribosomal_L20, Ribosomal protein L20. 
          Length = 108

 Score = 25.9 bits (58), Expect = 5.9
 Identities = 7/23 (30%), Positives = 15/23 (65%)

Query: 143 SKVKIEHKGLSNIVVNDPISFKC 165
           + +++  K L+ + +NDP +FK 
Sbjct: 85  ANIELNRKVLAQLAINDPEAFKA 107


>gnl|CDD|133117 cd06907, M14_AGBL2-3_like, Peptidase M14-like domain of ATP/GTP
           binding protein AGBL-2 and AGBL-3, and related proteins.
            Peptidase M14-like domain of ATP/GTP binding
           protein_like (AGBL)-2, and related proteins. The
           Peptidase M14 family of metallocarboxypeptidases are
           zinc-binding carboxypeptidases (CPs) which hydrolyze
           single, C-terminal amino acids from polypeptide chains,
           and have a recognition site for the free C-terminal
           carboxyl group, which is a key determinant of
           specificity. This subgroup includes the human AGBL-2,
           and -3, and the mouse cytosolic carboxypeptidase
           (CCPs)-2, and -3. ATP/GTP binding protein
           (AGTPBP-1/Nna1)-like proteins are active
           metallopeptidases that are thought to act on cytosolic
           proteins such as alpha-tubulin, to remove a C-terminal
           tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell
           degeneration (pcd). AGTPBP-1/Nna1 however does not
           belong to this subgroup. AGTPBP-1/Nna1-like proteins
           from the different phyla are highly diverse, but they
           all contain a unique N-terminal conserved domain right
           before the CP domain. It has been suggested that this
           N-terminal domain might act as a folding domain.
          Length = 261

 Score = 26.6 bits (59), Expect = 7.0
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 12/47 (25%)

Query: 34  SFRSCPMEVPVVDPAVGREPSGSGLGLYQA-RSGIVNSFTLET--CG 77
           SFRSC  +V         + S  G G     R GI+NSFT+E   CG
Sbjct: 193 SFRSCKFKV---------QKSKEGTGRVVMWRLGILNSFTMEATFCG 230


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.318    0.133    0.396 

Gapped
Lambda     K      H
   0.267   0.0777    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,366,114
Number of extensions: 740177
Number of successful extensions: 527
Number of sequences better than 10.0: 1
Number of HSP's gapped: 526
Number of HSP's successfully gapped: 14
Length of query: 171
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 81
Effective length of database: 6,945,742
Effective search space: 562605102
Effective search space used: 562605102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.9 bits)