RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15726
(171 letters)
>2eea_A Filamin-B; beta-sandwich, immunoglobulin-like fold, interaction
with GP1BA, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 115
Score = 70.6 bits (173), Expect = 1e-16
Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 3/107 (2%)
Query: 38 CPMEVPVVDPAVGREPSGSGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPV 97
P++ V P G S G GL + +FT+ T D+ + P +
Sbjct: 10 SPLQFYVNYPNSGS-VSAYGPGLVYGVANKTATFTIVTEDAGEGGLDLAIEGPSK--AEI 66
Query: 98 RCYQQKFANLLAEFTPTTTGVYKIDVLQGARPVRGSPYLCQVYDASK 144
C K + PT G Y I V + + GSP+ ++ D S+
Sbjct: 67 SCIDNKDGTCTVTYLPTLPGDYSILVKYNDKHIPGSPFTAKITDDSR 113
Score = 33.6 bits (77), Expect = 0.009
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 128 RPVRGSPYLCQV--YDASKVKIEHKGLSNIVVNDPISF 163
SP V ++ V GL V N +F
Sbjct: 5 SSGPESPLQFYVNYPNSGSVSAYGPGLVYGVANKTATF 42
>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10 PDB: 2eeb_A
Length = 112
Score = 69.8 bits (171), Expect = 3e-16
Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 4/107 (3%)
Query: 39 PMEVPVVDPAVGREPSGSGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVR 98
D R + + L + SF ++ G A D V +P GA
Sbjct: 3 SGSSGSDDA---RRLTVTSLQETGLKVNQPASFAVQLNG-ARGVIDARVHTPSGAVEECY 58
Query: 99 CYQQKFANLLAEFTPTTTGVYKIDVLQGARPVRGSPYLCQVYDASKV 145
+ F P GV+ IDV + GSP+ +V + S+
Sbjct: 59 VSELDSDKHTIRFIPHENGVHSIDVKFNGAHIPGSPFKIRVGEQSQA 105
Score = 37.9 bits (88), Expect = 2e-04
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 132 GSPYLCQVYDASKVKIEHKGLSNIVVNDPISF 163
GS DA ++ + + + VN P SF
Sbjct: 1 GSSGSSGSDDARRLTVTSLQETGLKVNQPASF 32
>2eec_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 125
Score = 67.6 bits (165), Expect = 2e-15
Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 7/122 (5%)
Query: 39 PMEVPVVDPAVGREPSG---SGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAV 95
+V V +P P+ G GL +GI + F + T V + P +
Sbjct: 7 GFKVRVGEPGQAGNPALVSAYGTGLEGGTTGIQSEFFINTTRAGPGTLSVTIEGPSKVKM 66
Query: 96 PVRCYQQKFANLLAEFTPTTTGVYKIDV-LQGARPVRGSPYLCQVYDASKVKIEHKGLSN 154
+ + + +TP G Y I V G + GSP+ +V V ++
Sbjct: 67 DCQETPEGY---KVMYTPMAPGNYLISVKYGGPNHIVGSPFKAKVTGQRLVSPGSANETS 123
Query: 155 IV 156
+
Sbjct: 124 SI 125
Score = 31.8 bits (72), Expect = 0.039
Identities = 7/46 (15%), Positives = 12/46 (26%), Gaps = 6/46 (13%)
Query: 129 PVRGSPYLCQVY------DASKVKIEHKGLSNIVVNDPISFKCKST 168
S + +V + + V GL F +T
Sbjct: 2 SSGSSGFKVRVGEPGQAGNPALVSAYGTGLEGGTTGIQSEFFINTT 47
>2dmc_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 116
Score = 67.1 bits (164), Expect = 3e-15
Identities = 15/89 (16%), Positives = 28/89 (31%)
Query: 54 SGSGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTP 113
+ Q + G F L+ S + +P G P + ++ F P
Sbjct: 18 TDDSRRCSQVKLGSAADFLLDISETDLSSLTASIKAPSGRDEPCLLKRLPNNHIGISFIP 77
Query: 114 TTTGVYKIDVLQGARPVRGSPYLCQVYDA 142
G + + + + V SP V +
Sbjct: 78 REVGEHLVSIKKNGNHVANSPVSIMVVQS 106
Score = 30.5 bits (69), Expect = 0.090
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 126 GARPVRGSPYLCQVYDASKVKIEHKGLSNIVVNDPISFKCKSTE 169
G+ + GSP+ ++ D + + S + + F +E
Sbjct: 4 GSSGIPGSPFTAKITD------DSRRCSQVKLGSAADFLLDISE 41
>2dia_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 113
Score = 65.2 bits (159), Expect = 1e-14
Identities = 19/96 (19%), Positives = 29/96 (30%), Gaps = 3/96 (3%)
Query: 56 SGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTT 115
SG GL + G +++ + S G V K + P T
Sbjct: 17 SGPGLEHGKVGEAGLLSVDCSEAGPGALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLT 76
Query: 116 TGVYKIDVLQGARPVRGSPYLCQVY---DASKVKIE 148
G+Y + + G V P +V D S
Sbjct: 77 AGMYTLTMKYGGELVPHFPARVKVEPAVDTSSGPSS 112
Score = 33.2 bits (76), Expect = 0.011
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 132 GSPYLCQVYDASKVKIEHKGLSNIVVNDPISF 163
GS +D SKV GL + V +
Sbjct: 1 GSSGSSGPFDPSKVVASGPGLEHGKVGEAGLL 32
>1v05_A Filamin C; actin-binding protein, immunoglobulin; 1.43A {Homo
sapiens} SCOP: b.1.18.10 PDB: 2eed_A
Length = 96
Score = 63.3 bits (154), Expect = 5e-14
Identities = 24/84 (28%), Positives = 33/84 (39%)
Query: 56 SGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTT 115
G GL QA G NSFT++ ++ V V P+ V +T
Sbjct: 12 RGPGLSQAFVGQKNSFTVDCSKAGTNMMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKE 71
Query: 116 TGVYKIDVLQGARPVRGSPYLCQV 139
G Y + V G V GSP+ +V
Sbjct: 72 KGDYILIVKWGDESVPGSPFKVKV 95
Score = 26.7 bits (59), Expect = 1.7
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 140 YDASKVKIEHKGLSNIVVNDPISFKCKSTEEP 171
DASKV GLS V SF ++
Sbjct: 4 SDASKVVTRGPGLSQAFVGQKNSFTVDCSKAG 35
>2dlg_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10
Length = 102
Score = 63.3 bits (154), Expect = 6e-14
Identities = 22/86 (25%), Positives = 31/86 (36%)
Query: 54 SGSGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTP 113
SG A G + L+ + SS+ VTSP G + F P
Sbjct: 4 GSSGRAPSVATVGSICDLNLKIPEINSSDMSAHVTSPSGRVTEAEIVPMGKNSHCVRFVP 63
Query: 114 TTTGVYKIDVLQGARPVRGSPYLCQV 139
GV+ + V + V GSP+ V
Sbjct: 64 QEMGVHTVSVKYRGQHVTGSPFQFTV 89
>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex,
phosphoprotein, disease mutation, immunoglobulin like,
zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10 PDB:
2brq_A* 2jf1_A 3isw_A
Length = 94
Score = 63.2 bits (154), Expect = 6e-14
Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
Query: 56 SGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTT 115
G GL +A +G+ F++ T + + V P A + +K + +
Sbjct: 9 GGPGLERAEAGVPAEFSIWTREAGAGGLAIAVEGPSKA--EISFEDRKDGSCGVAYVVQE 66
Query: 116 TGVYKIDVLQGARPVRGSPYLCQVYDAS 143
G Y++ V + SP++ V S
Sbjct: 67 PGDYEVSVKFNEEHIPDSPFVVPVASPS 94
Score = 25.8 bits (57), Expect = 3.1
Identities = 7/25 (28%), Positives = 8/25 (32%)
Query: 141 DASKVKIEHKGLSNIVVNDPISFKC 165
A KV+ GL P F
Sbjct: 2 GAHKVRAGGPGLERAEAGVPAEFSI 26
>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding
protein, cytoskeleton, complex; 2.32A {Homo sapiens}
SCOP: b.1.18.10 PDB: 2aav_A
Length = 97
Score = 62.8 bits (153), Expect = 9e-14
Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 2/84 (2%)
Query: 56 SGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTT 115
G GL +FT+ T + + P + C + + P
Sbjct: 12 YGPGLTHGVVNKPATFTVNTKDAGEGGLSLAIEGPSK--AEISCTDNQDGTCSVSYLPVL 69
Query: 116 TGVYKIDVLQGARPVRGSPYLCQV 139
G Y I V + V GSP+ +V
Sbjct: 70 PGDYSILVKYNEQHVPGSPFTARV 93
Score = 27.3 bits (61), Expect = 0.99
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 138 QVYDASKVKIEHKGLSNIVVNDPISFKC 165
+ + V GL++ VVN P +F
Sbjct: 2 AMVNCGHVTAYGPGLTHGVVNKPATFTV 29
>2d7o_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 111
Score = 62.9 bits (153), Expect = 9e-14
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 2/91 (2%)
Query: 56 SGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTT 115
G GL +FT+ T + V P A + C K + PT
Sbjct: 17 YGPGLSHGMVNKPATFTIVTKDAGEGGLSLAVEGPSKA--EITCKDNKDGTCTVSYLPTA 74
Query: 116 TGVYKIDVLQGARPVRGSPYLCQVYDASKVK 146
G Y I V + + GSP+ ++ ++
Sbjct: 75 PGDYSIIVRFDDKHIPGSPFTAKITGDDSMR 105
Score = 32.5 bits (74), Expect = 0.022
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 132 GSPYLCQVYDASKVKIEHKGLSNIVVNDPISFKC 165
GS ++ V GLS+ +VN P +F
Sbjct: 1 GSSGSSGAINSRHVSAYGPGLSHGMVNKPATFTI 34
>2dic_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 105
Score = 62.9 bits (153), Expect = 1e-13
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 56 SGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTT 115
G GL +A + N FT+ T G + V P + + C K + AE+ P
Sbjct: 17 QGPGLKEAFTNKPNVFTVVTRGAGIGGLGITVEGPSES--KINCRDNKDGSCSAEYIPFA 74
Query: 116 TGVYKIDVLQGARPVRGSPYLCQVYDAS 143
G Y +++ G + GSP+ V D
Sbjct: 75 PGDYDVNITYGGAHIPGSPFRVPVKDVV 102
Score = 32.4 bits (74), Expect = 0.019
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 132 GSPYLCQVYDASKVKIEHKGLSNIVVNDPISFKC 165
GS S+V+ + GL N P F
Sbjct: 1 GSSGSSGGCQPSRVQAQGPGLKEAFTNKPNVFTV 34
>2di9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 131
Score = 63.4 bits (154), Expect = 1e-13
Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 5/112 (4%)
Query: 38 CPMEVPVVDPAVGREPSGSGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPV 97
P V P + G GL G FT++T G + + V P +
Sbjct: 19 SPYTVEASLPPDPSKVKAHGPGLEGGLVGKPAEFTIDTKGAGTGGLGLTVEGPCE--AKI 76
Query: 98 RCYQQKFANLLAEFTPTTTGVYKIDVLQGARPVRGSPYLCQV---YDASKVK 146
C + PT G Y +++L + GSP+ + +D S
Sbjct: 77 ECSDNGDGTCSVSYLPTKPGEYFVNILFEEVHIPGSPFKADIEMPFDPSSGP 128
Score = 41.0 bits (96), Expect = 2e-05
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 116 TGVYKIDVLQGARPVRGSPYLCQVY---DASKVKIEHKGLSNIVVNDPISFKCKSTEEP 171
+ DV PV GSPY + D SKVK GL +V P F +
Sbjct: 2 SSGSSGDVTYDGHPVPGSPYTVEASLPPDPSKVKAHGPGLEGGLVGKPAEFTIDTKGAG 60
>2di8_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 111
Score = 62.9 bits (153), Expect = 1e-13
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Query: 56 SGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTT 115
G GL + R+ ++ F ++T + V P V ++ + + PT
Sbjct: 17 YGRGLSEGRTFEMSDFIVDTRDAGYGGISLAVEGPSK--VDIQTEDLEDGTCKVSYFPTV 74
Query: 116 TGVYKIDVLQGARPVRGSPYLCQVYDASKVK 146
GVY + V GSP+ ++ +VK
Sbjct: 75 PGVYIVSTKFADEHVPGSPFTVKISGEGRVK 105
Score = 36.3 bits (84), Expect = 0.001
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 132 GSPYLCQVYDASKVKIEHKGLSNIVVNDPISFKC 165
GS + DA + K+ +GLS + F
Sbjct: 1 GSSGSSGIGDARRAKVYGRGLSEGRTFEMSDFIV 34
>2nqc_A Filamin-C; immunoglobulin, metal binding, immune system; 2.05A
{Homo sapiens} SCOP: b.1.18.10 PDB: 2d7q_A 2k3t_A
Length = 138
Score = 63.4 bits (154), Expect = 1e-13
Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 5/106 (4%)
Query: 37 SCPMEVPVVDPAVGREPSGSGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVP 96
+ G S G GL +G+ + F + T S V + P +
Sbjct: 33 GSRVGEQSQAGDPGL-VSAYGPGLEGGTTGVSSEFIVNTLNAGSGALSVTIDGPSKVQLD 91
Query: 97 VRCYQQKFANLLAEFTPTTTGVYKIDV-LQGARPVRGSPYLCQVYD 141
R + +TP G Y I + G + + GSP+ +V
Sbjct: 92 CRECPEGHV---VTYTPMAPGNYLIAIKYGGPQHIVGSPFKAKVTG 134
Score = 48.0 bits (114), Expect = 7e-08
Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 2/61 (3%)
Query: 110 EFTPTTTGVYKIDVLQGARPVRGSPYLCQVY--DASKVKIEHKGLSNIVVNDPISFKCKS 167
+ +G + + G + RGS Q D V GL F +
Sbjct: 11 QQMGRGSGSHMASMTGGQQMGRGSRVGEQSQAGDPGLVSAYGPGLEGGTTGVSSEFIVNT 70
Query: 168 T 168
Sbjct: 71 L 71
>2dj4_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10
Length = 108
Score = 62.5 bits (152), Expect = 1e-13
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
Query: 39 PMEVPVVDPAVGREPSGSGLGLYQA-RSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPV 97
VVDP+ + +G GL R+ ++ SFT+++ + +V V P+G PV
Sbjct: 3 SGSSGVVDPS---KVKIAGPGLGSGVRARVLQSFTVDSSKAGLAPLEVRVLGPRGLVEPV 59
Query: 98 RCYQQKFANLLAEFTPTTTGVYKIDVLQGARPVRGSPYLCQV---YDAS 143
+TP+ G Y + V + SP+ +V YDAS
Sbjct: 60 NVVDNGDGTHTVTYTPSQEGPYMVSVKYADEEIPRSPFKVKVLPTYDAS 108
Score = 32.4 bits (74), Expect = 0.023
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 132 GSPYLCQVYDASKVKIEHKGLSN-IVVNDPISF 163
GS V D SKVKI GL + + SF
Sbjct: 1 GSSGSSGVVDPSKVKIAGPGLGSGVRARVLQSF 33
>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation,
actin-binding, cytoplasm, cytoskeleton, disease
mutation, phosphoprotein; 1.65A {Homo sapiens}
Length = 89
Score = 61.6 bits (150), Expect = 2e-13
Identities = 21/84 (25%), Positives = 32/84 (38%)
Query: 56 SGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTT 115
GLGL +A G +SFT++ ++ V V P+ + +
Sbjct: 5 KGLGLSKAYVGQKSSFTVDCSKAGNNMLLVGVHGPRTPCEEILVKHVGSRLYSVSYLLKD 64
Query: 116 TGVYKIDVLQGARPVRGSPYLCQV 139
G Y + V G + GSPY V
Sbjct: 65 KGEYTLVVKWGHEHIPGSPYRVVV 88
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation,
immun like, cytoskeleton, actin-binding, cell junction,
shape; HET: CME; 2.44A {Homo sapiens}
Length = 100
Score = 60.9 bits (148), Expect = 5e-13
Identities = 23/87 (26%), Positives = 34/87 (39%)
Query: 56 SGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTT 115
SG GL +A +G V F ++ S+E + + S G V + P
Sbjct: 14 SGPGLERATAGEVGQFQVDCSSAGSAELTIEICSEAGLPAEVYIQDHGDGTHTITYIPLC 73
Query: 116 TGVYKIDVLQGARPVRGSPYLCQVYDA 142
G Y + + G +PV P QV A
Sbjct: 74 PGAYTVTIKYGGQPVPNFPSKLQVEPA 100
Score = 26.6 bits (59), Expect = 2.0
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 139 VYDASKVKIEHKGLSNIVVNDPISF 163
+DASKVK GL + F
Sbjct: 5 PFDASKVKCSGPGLERATAGEVGQF 29
>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 105
Score = 60.2 bits (146), Expect = 8e-13
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 56 SGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTT 115
G GL + +G+ F++ T + + V P A + K + +
Sbjct: 17 GGPGLERGEAGVPAEFSIWTREAGAGGLSIAVEGPSKA--EITFDDHKNGSCGVSYIAQE 74
Query: 116 TGVYKIDVLQGARPVRGSPYLCQVYDAS 143
G Y++ + + SPYL V S
Sbjct: 75 PGNYEVSIKFNDEHIPESPYLVPVIAPS 102
Score = 31.7 bits (72), Expect = 0.034
Identities = 10/40 (25%), Positives = 12/40 (30%)
Query: 132 GSPYLCQVYDASKVKIEHKGLSNIVVNDPISFKCKSTEEP 171
GS A KV+ GL P F + E
Sbjct: 1 GSSGSSGEGGAHKVRAGGPGLERGEAGVPAEFSIWTREAG 40
>2e9j_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 59.9 bits (145), Expect = 2e-12
Identities = 20/92 (21%), Positives = 30/92 (32%)
Query: 54 SGSGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTP 113
SG GL Y + + F ++ V +T +G + K + P
Sbjct: 27 SGPGLSSYGVPASLPVDFAIDARDAGEGLLAVQITDQEGKPKRAIVHDNKDGTYAVTYIP 86
Query: 114 TTTGVYKIDVLQGARPVRGSPYLCQVYDASKV 145
TG Y I V G + SPY +
Sbjct: 87 DKTGRYMIGVTYGGDDIPLSPYRIRATQTGDA 118
>2k7q_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation,
actin-binding, cytoplasm, cytoskeleton, disease
mutation, phosphoprotein; NMR {Homo sapiens}
Length = 191
Score = 61.3 bits (148), Expect = 2e-12
Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 5/117 (4%)
Query: 54 SGSGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTP 113
+ + + G + S V P G P + + ++ F P
Sbjct: 4 GDDSMRMSHLKVGSAADIPINISETDLSLLTATVVPPSGREEPCLLKRLRNGHVGISFVP 63
Query: 114 TTTGVYKIDVLQGARPVRGSPYLCQV-----YDASKVKIEHKGLSNIVVNDPISFKC 165
TG + + V + + V SP + DAS+V++ +GL +P F
Sbjct: 64 KETGEHLVHVKKNGQHVASSPIPVVISQSEIGDASRVRVSGQGLHEGHTFEPAEFII 120
Score = 59.4 bits (143), Expect = 1e-11
Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 2/110 (1%)
Query: 37 SCPMEVPVVDPAVGREPSGSGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVP 96
P+ + + SG GL++ + F ++T + + P V
Sbjct: 84 PIPVVISQSEIGDASRVRVSGQGLHEGHTFEPAEFIIDTRDAGYGGLSLSIEGPSK--VD 141
Query: 97 VRCYQQKFANLLAEFTPTTTGVYKIDVLQGARPVRGSPYLCQVYDASKVK 146
+ + + PT G Y I++ + V GSP+ +V +VK
Sbjct: 142 INTEDLEDGTCRVTYCPTEPGNYIINIKFADQHVPGSPFSVKVTGEGRVK 191
>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 115
Score = 59.5 bits (144), Expect = 3e-12
Identities = 20/115 (17%), Positives = 32/115 (27%), Gaps = 10/115 (8%)
Query: 39 PMEVPVVDPA---VGREPSGSGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAV 95
D + SG GL + + FT++ V + P+G
Sbjct: 3 SGSSGAHDASKVRA----SGPGLNASGIPASLPVEFTIDARDAGEGLLTVQILDPEGKPK 58
Query: 96 PVRCYQQKFANLLAEFTPTTTGVYKIDVLQGARPVRGSPYLCQVY---DASKVKI 147
+ P +G Y I + G + SP+ DAS
Sbjct: 59 KANIRDNGDGTYTVSYLPDMSGRYTITIKYGGDEIPYSPFRIHALPTGDASSGPS 113
Score = 29.8 bits (67), Expect = 0.18
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 132 GSPYLCQVYDASKVKIEHKGLS--NIVVNDPISF 163
GS +DASKV+ GL+ I + P+ F
Sbjct: 1 GSSGSSGAHDASKVRASGPGLNASGIPASLPVEF 34
>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 124
Score = 59.5 bits (144), Expect = 3e-12
Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 1/97 (1%)
Query: 56 SGLGLYQA-RSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPT 114
+G G+ ++G F ++ + V +P G + + +T
Sbjct: 17 TGPGIASTVKTGEEVGFVVDAKTAGKGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAA 76
Query: 115 TTGVYKIDVLQGARPVRGSPYLCQVYDASKVKIEHKG 151
G Y I V G + SP+ D +E
Sbjct: 77 KPGTYVIYVRFGGVDIPNSPFTVMATDGEVTAVEEAP 113
Score = 30.2 bits (68), Expect = 0.17
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 132 GSPYLCQVYDASKVKIEHKGLSN-IVVNDPISF 163
GS DASK G+++ + + + F
Sbjct: 1 GSSGSSGTGDASKCLATGPGIASTVKTGEEVGF 33
>2k9u_A Gamma filamin; cytoskeletal complex, alternative splicing, cell
adhesion, cell junction, cell shape, cytoplasm,
cytoskeleton; NMR {Homo sapiens}
Length = 119
Score = 58.0 bits (140), Expect = 1e-11
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
Query: 56 SGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTT 115
G GL + +G+ F++ T + + V P A + +K + +
Sbjct: 24 GGTGLERGVAGVPAEFSIWTREAGAGGLSIAVEGPSKA--EIAFEDRKDGSCGVSYVVQE 81
Query: 116 TGVYKIDVLQGARPVRGSPYLCQVYDAS 143
G Y++ + + SP++ V S
Sbjct: 82 PGDYEVSIKFNDEHIPDSPFVVPVASLS 109
Score = 29.1 bits (65), Expect = 0.31
Identities = 11/41 (26%), Positives = 12/41 (29%), Gaps = 7/41 (17%)
Query: 132 GSPYLCQVY-------DASKVKIEHKGLSNIVVNDPISFKC 165
G P Q A KV+ GL V P F
Sbjct: 1 GIPEFFQFTVGPLGEGGAHKVRAGGTGLERGVAGVPAEFSI 41
>2ds4_A Tripartite motif protein 45; beta-sandwich, immunoglobulin-like
fold, filamin domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 113
Score = 57.5 bits (139), Expect = 1e-11
Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 9/93 (9%)
Query: 56 SGLGLYQARSGIVNSFTLET-------CGVASSEFDVIVTSPQGAAVPVRCYQQKFANL- 107
G L++AR SFTL G V V PVR Q +
Sbjct: 17 QGEDLHRAREKQTASFTLLCKDAAGEIMGRGGDNVQVAVVPKDKKDSPVRTMVQDNKDGT 76
Query: 108 -LAEFTPTTTGVYKIDVLQGARPVRGSPYLCQV 139
+TP GVY + V + V+GSP+ V
Sbjct: 77 YYISYTPKEPGVYTVWVCIKEQHVQGSPFTVTV 109
Score = 28.6 bits (64), Expect = 0.49
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 132 GSPYLCQVYDASKVKIEHKGLSNIVVNDPISF 163
GS D +K ++ + L SF
Sbjct: 1 GSSGSSGEVDPAKCVLQGEDLHRAREKQTASF 32
>2dib_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 128
Score = 57.5 bits (139), Expect = 2e-11
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 6/101 (5%)
Query: 54 SGSGLGLYQARSGIVNSFTLET---CGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAE 110
G G+ FT+++ V + +P GA+ E
Sbjct: 27 FGPGIEGKDVFREATTDFTVDSRPLTQVGGDHIKAHIANPSGASTECFVTDNADGTYQVE 86
Query: 111 FTPTTTGVYKIDVLQGARPVRGSPYLCQV---YDASKVKIE 148
+TP G++ ++V P+ SP+ V S
Sbjct: 87 YTPFEKGLHVVEVTYDDVPIPNSPFKVAVTEGCQPSSGPSS 127
>2j3s_A Filamin-A; cytoskeleton, phosphorylation, structural protein; 2.5A
{Homo sapiens} SCOP: b.1.18.10 b.1.18.10 PDB: 2e9i_A
Length = 288
Score = 55.0 bits (131), Expect = 9e-10
Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 2/113 (1%)
Query: 56 SGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTT 115
SG GL++ + F ++T + + P V + + + PT
Sbjct: 12 SGQGLHEGHTFEPAEFIIDTRDAGYGGLSLSIEGPSK--VDINTEDLEDGTCRVTYCPTE 69
Query: 116 TGVYKIDVLQGARPVRGSPYLCQVYDASKVKIEHKGLSNIVVNDPISFKCKST 168
G Y I++ + V GSP+ +V +VK + C +
Sbjct: 70 PGNYIINIKFADQHVPGSPFSVKVTGEGRVKESITRRRRAPSVANVGSHCDLS 122
Score = 51.9 bits (123), Expect = 1e-08
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 2/87 (2%)
Query: 57 GLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTTT 116
G GL +A +G+ F++ T + + V P A + +K + +
Sbjct: 204 GPGLERAEAGVPAEFSIWTREAGAGGLAIAVEGPSKA--EISFEDRKDGSCGVAYVVQEP 261
Query: 117 GVYKIDVLQGARPVRGSPYLCQVYDAS 143
G Y++ V + SP++ V S
Sbjct: 262 GDYEVSVKFNEEHIPDSPFVVPVASPS 288
Score = 46.1 bits (108), Expect = 1e-06
Identities = 22/117 (18%), Positives = 35/117 (29%), Gaps = 5/117 (4%)
Query: 60 LYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTTTGVY 119
A G +L+ ++ + VTSP G + + F P G +
Sbjct: 110 PSVANVGSHCDLSLKIPEISIQDMTAQVTSPSGKTHEAEIVEGENHTYCIRFVPAEMGTH 169
Query: 120 KIDVLQGARPVRGSPYLCQVYDASKVKIEH-----KGLSNIVVNDPISFKCKSTEEP 171
+ V + V GSP+ V + GL P F + E
Sbjct: 170 TVSVKYKGQHVPGSPFQFTVGPLGEGGAHKVRAGGPGLERAEAGVPAEFSIWTREAG 226
>2ee9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 95
Score = 51.4 bits (123), Expect = 2e-09
Identities = 14/90 (15%), Positives = 25/90 (27%), Gaps = 1/90 (1%)
Query: 54 SGSGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTP 113
SG+ + V E V P G K + + P
Sbjct: 4 GSSGVSDMNGLGFKPFDLVI-PFAVRKGEITGEVHMPSGKTATPEIVDNKDGTVTVRYAP 62
Query: 114 TTTGVYKIDVLQGARPVRGSPYLCQVYDAS 143
T G++++ + + SP V +
Sbjct: 63 TEVGLHEMHIKYMGSHIPESPLQFYVNYPN 92
>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 93
Score = 50.9 bits (122), Expect = 2e-09
Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 2/88 (2%)
Query: 59 GLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTTTGV 118
G + + + V E V P G K + + PT G+
Sbjct: 1 GSSGSSGLRPFNLVI-PFAVQKGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGL 59
Query: 119 YKIDVLQGARPVRGSPYLCQVYDASKVK 146
+++ + + GSP V DA +
Sbjct: 60 HQMGIKYDGNHIPGSPLQFYV-DAINSR 86
>1wlh_A Gelation factor; ABP-120, filamin, immunoglobulin fold, ROD domain,
structural protein; 2.80A {Dictyostelium discoideum}
SCOP: b.1.18.10 b.1.18.10 b.1.18.10 PDB: 1ksr_A
Length = 311
Score = 51.6 bits (122), Expect = 2e-08
Identities = 18/113 (15%), Positives = 31/113 (27%), Gaps = 7/113 (6%)
Query: 38 CPMEVPVVDPAVGREPSGSGLGLYQARSGIVNSFTLET-------CGVASSEFDVIVTSP 90
P V V G GL + FT+ F+V + P
Sbjct: 93 FPKTVTVKPAPSAEHSYAEGEGLVKVFDNAPAEFTIFAVDTKGVARTDGGDPFEVAINGP 152
Query: 91 QGAAVPVRCYQQKFANLLAEFTPTTTGVYKIDVLQGARPVRGSPYLCQVYDAS 143
G V + + G Y ++V P++ P + + +
Sbjct: 153 DGLVVDAKVTDNNDGTYGVVYDAPVEGNYNVNVTLRGNPIKNMPIDVKCIEGA 205
Score = 40.4 bits (93), Expect = 1e-04
Identities = 24/118 (20%), Positives = 31/118 (26%), Gaps = 12/118 (10%)
Query: 56 SGLGLYQARSGIVNSFTLET-------CGVASSEFDVIVTSPQGAAVPVRCYQQKFANLL 108
G GL + F + F V + P V
Sbjct: 11 EGPGLDGGECFQPSKFKIHAVDPDGVHRTDGGDGFVVTIEGPAP--VDPVMVDNGDGTYD 68
Query: 109 AEFTPTTTGVYKIDVLQGARPVRGSPYLC---QVYDASKVKIEHKGLSNIVVNDPISF 163
EF P G Y I++ V G P A E +GL + N P F
Sbjct: 69 VEFEPKEAGDYVINLTLDGDNVNGFPKTVTVKPAPSAEHSYAEGEGLVKVFDNAPAEF 126
Score = 36.6 bits (83), Expect = 0.002
Identities = 8/98 (8%), Positives = 24/98 (24%)
Query: 49 VGREPSGSGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLL 108
+G + + + + + + +
Sbjct: 201 CIEGANGEDSSFGSFTFTVAAKNKKGEVKTYGGDKFEVSITGPAEEITLDAIDNQDGTYT 260
Query: 109 AEFTPTTTGVYKIDVLQGARPVRGSPYLCQVYDASKVK 146
A ++ G + V + + GSP+ + + K
Sbjct: 261 AAYSLVGNGRFSTGVKLNGKHIEGSPFKQVLGNPGKKN 298
>1qfh_A Protein (gelation factor); actin binding protein, immunoglobulin,
ABP- 120; 2.20A {Dictyostelium discoideum} SCOP:
b.1.18.10 b.1.18.10
Length = 212
Score = 50.2 bits (119), Expect = 3e-08
Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 7/111 (6%)
Query: 56 SGLGLYQARSGIVNSFTLET-------CGVASSEFDVIVTSPQGAAVPVRCYQQKFANLL 108
G GL + FT+ F+V + P G V +
Sbjct: 12 EGEGLVKVFDNAPAEFTIFAVDTKGVARTDGGDPFEVAINGPDGLVVDAKVTDNNDGTYG 71
Query: 109 AEFTPTTTGVYKIDVLQGARPVRGSPYLCQVYDASKVKIEHKGLSNIVVND 159
+ G Y ++V P++ P + + + + G V
Sbjct: 72 VVYDAPVEGNYNVNVTLRGNPIKNMPIDVKCIEGANGEDSSFGSFTFTVAA 122
Score = 41.0 bits (95), Expect = 5e-05
Identities = 11/113 (9%), Positives = 31/113 (27%)
Query: 34 SFRSCPMEVPVVDPAVGREPSGSGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGA 93
+ R P++ +D +G + + + +
Sbjct: 87 TLRGNPIKNMPIDVKCIEGANGEDSSFGSFTFTVAAKNKKGEVKTYGGDKFEVSITGPAE 146
Query: 94 AVPVRCYQQKFANLLAEFTPTTTGVYKIDVLQGARPVRGSPYLCQVYDASKVK 146
+ + + A ++ G + V + + GSP+ + + K
Sbjct: 147 EITLDAIDNQDGTYTAAYSLVGNGRFSTGVKLNGKHIEGSPFKQVLGNPGKKN 199
Score = 26.7 bits (58), Expect = 3.7
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 140 YDASKVKIEHKGLSNIVVNDPISF 163
A E +GL + N P F
Sbjct: 4 PSAEHSYAEGEGLVKVFDNAPAEF 27
>2k7p_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation,
actin-binding, cytoplasm, cytoskeleton, disease
mutation, phosphoprotein; NMR {Homo sapiens}
Length = 188
Score = 46.0 bits (108), Expect = 7e-07
Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 2/85 (2%)
Query: 57 GLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTTT 116
G GL +FT+ T + + P + C + + P
Sbjct: 104 GPGLTHGVVNKPATFTVNTKDAGEGGLSLAIEGPSK--AEISCTDNQDGTCSVSYLPVLP 161
Query: 117 GVYKIDVLQGARPVRGSPYLCQVYD 141
G Y I V + V GSP+ +V
Sbjct: 162 GDYSILVKYNEQHVPGSPFTARVTG 186
Score = 39.5 bits (91), Expect = 2e-04
Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 6/114 (5%)
Query: 54 SGSGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTP 113
+GL + R + + E V P G K + + P
Sbjct: 11 GVNGLDVTSLRPF---DLVI-PFTIKKGEITGEVRMPSGKVAQPTITDNKDGTVTVRYAP 66
Query: 114 TTTGVYKIDVLQGARPVRGSPYLCQVYDASKVKIEHKG--LSNIVVNDPISFKC 165
+ G++++D+ + GSP V + + G L++ VVN P +F
Sbjct: 67 SEAGLHEMDIRYDNMHIPGSPLQFYVDYVNCGHVTAYGPGLTHGVVNKPATFTV 120
>2di7_A BK158_1; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 31.9 bits (72), Expect = 0.042
Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 16/102 (15%)
Query: 56 SGLGLYQARSGIVNSFTLE---------TCGVASSEFDVIVTSPQGAAVPVRCYQQKFAN 106
G GL F ++ T F V V++P+ R Q
Sbjct: 23 WGPGLKADVVLPARYFYIQAVDTSGNKFTSSPGEKVFQVKVSAPEEQ--FTRVGVQVLDR 80
Query: 107 -----LLAEFTPTTTGVYKIDVLQGARPVRGSPYLCQVYDAS 143
++ + K+++ + V SPY+ + S
Sbjct: 81 KDGSFIVRYRMYASYKNLKVEIKFQGQHVAKSPYILKGSGPS 122
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse
transcriptase, transferase, replication; 3.00A {Moloney
murine leukemia virus} SCOP: e.8.1.2
Length = 455
Score = 30.0 bits (68), Expect = 0.36
Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
Query: 92 GAAVP-VRCYQQKFANLLAEFTPTTTGVYKIDVLQGARPVRGSPY 135
G+ + + + Q +A I + + PV Y
Sbjct: 1 GSHMTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQY 45
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.38
Identities = 29/170 (17%), Positives = 50/170 (29%), Gaps = 60/170 (35%)
Query: 3 FFTKSCILLSEKAPSWISYGLVQARTLREETSFRSCPMEVPVVDPAVG---REPSGSGLG 59
F + LL + L+ ++ SF + +++PV D G R SGS
Sbjct: 427 FHSH---LLVPASD------LINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS--- 474
Query: 60 LYQARSGIVNSFTLETCGVASSEFDVIVTSPQ--GAAVPVRCYQQKFANLLAEFTP-TTT 116
++ D I+ P + A + +F P +
Sbjct: 475 ------------------ISERIVDCIIRLPVKWETTTQFK------ATHILDFGPGGAS 510
Query: 117 GVYKI--DVLQGARPVRGSPYLCQVYDASKVKIEHKGLSNIVVNDPISFK 164
G+ + G G +V A + I +D FK
Sbjct: 511 GLGVLTHRNKDG----TG----VRVIVAGTLDINP--------DDDYGFK 544
Score = 28.1 bits (62), Expect = 1.8
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 10/48 (20%)
Query: 125 QGA-RPVRG------SPYLCQVYD-ASKVKIEHKGLS--NIVVNDPIS 162
QG+ G S V++ A + G S +IV+N+P++
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVN 1671
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 29.4 bits (67), Expect = 0.57
Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 34/101 (33%)
Query: 28 TLREETSFRSCPMEVPVVDPAVGREPSGSGLGLYQARSGIVNSFTLETCGVASSEFDVIV 87
T + S + V A+GR P L LE G++
Sbjct: 262 TWEDHASGKEDTGTFDTVLWAIGRVPETRTLN-------------LEKAGIS-------- 300
Query: 88 TSPQGAAVPVRCYQQKFANLLAEFTPTTT-GVYKI-DVLQG 126
T+P+ + V + T+ +Y I DV +G
Sbjct: 301 TNPKNQKIIVDAQEA-----------TSVPHIYAIGDVAEG 330
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.72
Identities = 23/153 (15%), Positives = 37/153 (24%), Gaps = 61/153 (39%)
Query: 78 VASSEFDVIVTSP---QGAAVPVRCYQQKFANLLAEFT---------------------- 112
++ E D I+ S G K ++ +F
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 113 --PTTTGVYKIDVLQGARPV-------RGSPY------LCQVYDASKVKIEH--KG---- 151
T + + D L V R PY L ++ A V I G
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI-DGVLGSGKT 164
Query: 152 -LSNIVVNDP------------ISF-KCKSTEE 170
++ V ++ C S E
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat
fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Length = 177
Score = 26.9 bits (60), Expect = 2.6
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 45 VDPAVGREPSGSGLGLYQARSGIV 68
VD A R+ G+GLGL A+ +V
Sbjct: 104 VDKARTRKLGGTGLGLAIAKE-MV 126
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2,
NYSGXRC, structural genomics, protein structure
initiative; 2.80A {Vibrio parahaemolyticus}
Length = 213
Score = 26.5 bits (59), Expect = 4.3
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 79 ASSEFDVIVTSPQGAAVPVRCYQQKFANLLAE 110
+ I++SP RC+ A +LAE
Sbjct: 45 KGYDVAGIISSPLS-----RCHD--LAQILAE 69
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl
MAD, two-component systems, transferase; HET: ADP; 1.9A
{Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB:
3dge_A*
Length = 258
Score = 25.9 bits (58), Expect = 7.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 45 VDPAVGREPSGSGLGL 60
VD ++ E G+GLGL
Sbjct: 200 VDSSLTYEVPGTGLGL 215
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.396
Gapped
Lambda K H
0.267 0.0837 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,494,772
Number of extensions: 137333
Number of successful extensions: 361
Number of sequences better than 10.0: 1
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 79
Length of query: 171
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 84
Effective length of database: 4,272,666
Effective search space: 358903944
Effective search space used: 358903944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.4 bits)