RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15726
(171 letters)
>d2diaa1 b.1.18.10 (A:8-107) Filamin b {Human (Homo sapiens) [TaxId:
9606]}
Length = 100
Score = 68.1 bits (166), Expect = 3e-16
Identities = 18/90 (20%), Positives = 28/90 (31%)
Query: 56 SGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTT 115
SG GL + G +++ + S G V K + P T
Sbjct: 10 SGPGLEHGKVGEAGLLSVDCSEAGPGALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLT 69
Query: 116 TGVYKIDVLQGARPVRGSPYLCQVYDASKV 145
G+Y + + G V P +V A
Sbjct: 70 AGMYTLTMKYGGELVPHFPARVKVEPAVDT 99
Score = 29.2 bits (65), Expect = 0.10
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 140 YDASKVKIEHKGLSNIVVNDPISFKCKSTE 169
+D SKV GL + V + +E
Sbjct: 2 FDPSKVVASGPGLEHGKVGEAGLLSVDCSE 31
>d2di8a1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId:
9606]}
Length = 98
Score = 64.6 bits (157), Expect = 7e-15
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Query: 56 SGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTT 115
G GL + R+ ++ F ++T + V P V ++ + + PT
Sbjct: 10 YGRGLSEGRTFEMSDFIVDTRDAGYGGISLAVEGPSK--VDIQTEDLEDGTCKVSYFPTV 67
Query: 116 TGVYKIDVLQGARPVRGSPYLCQVYDASKVK 146
GVY + V GSP+ ++ +VK
Sbjct: 68 PGVYIVSTKFADEHVPGSPFTVKISGEGRVK 98
Score = 27.6 bits (61), Expect = 0.35
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 139 VYDASKVKIEHKGLSNIVVNDPISFKC 165
+ DA + K+ +GLS + F
Sbjct: 1 IGDARRAKVYGRGLSEGRTFEMSDFIV 27
>d2d7pa1 b.1.18.10 (A:8-106) Filamin C {Human (Homo sapiens) [TaxId:
9606]}
Length = 99
Score = 63.8 bits (155), Expect = 1e-14
Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 1/92 (1%)
Query: 54 SGSGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTP 113
+ + L + SF ++ G A D V +P GA + F P
Sbjct: 8 TVTSLQETGLKVNQPASFAVQLNG-ARGVIDARVHTPSGAVEECYVSELDSDKHTIRFIP 66
Query: 114 TTTGVYKIDVLQGARPVRGSPYLCQVYDASKV 145
GV+ IDV + GSP+ +V + S+
Sbjct: 67 HENGVHSIDVKFNGAHIPGSPFKIRVGEQSQA 98
Score = 27.6 bits (61), Expect = 0.31
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 140 YDASKVKIEHKGLSNIVVNDPISFK 164
DA ++ + + + VN P SF
Sbjct: 2 DDARRLTVTSLQETGLKVNQPASFA 26
>d1v05a_ b.1.18.10 (A:) Filamin C {Human (Homo sapiens) [TaxId:
9606]}
Length = 96
Score = 62.7 bits (152), Expect = 4e-14
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
Query: 48 AVGREPSG---SGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKF 104
A+G + S G GL QA G NSFT++ ++ V V P+ V
Sbjct: 1 AMGSDASKVVTRGPGLSQAFVGQKNSFTVDCSKAGTNMMMVGVHGPKTPCEEVYVKHMGN 60
Query: 105 ANLLAEFTPTTTGVYKIDVLQGARPVRGSPYLCQV 139
+T G Y + V G V GSP+ +V
Sbjct: 61 RVYNVTYTVKEKGDYILIVKWGDESVPGSPFKVKV 95
Score = 28.0 bits (62), Expect = 0.22
Identities = 11/26 (42%), Positives = 11/26 (42%)
Query: 140 YDASKVKIEHKGLSNIVVNDPISFKC 165
DASKV GLS V SF
Sbjct: 4 SDASKVVTRGPGLSQAFVGQKNSFTV 29
>d2diba1 b.1.18.10 (A:8-122) Filamin b {Human (Homo sapiens) [TaxId:
9606]}
Length = 115
Score = 61.9 bits (150), Expect = 1e-13
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 3/93 (3%)
Query: 54 SGSGLGLYQARSGIVNSFTLET---CGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAE 110
G G+ FT+++ V + +P GA+ E
Sbjct: 20 FGPGIEGKDVFREATTDFTVDSRPLTQVGGDHIKAHIANPSGASTECFVTDNADGTYQVE 79
Query: 111 FTPTTTGVYKIDVLQGARPVRGSPYLCQVYDAS 143
+TP G++ ++V P+ SP+ V +
Sbjct: 80 YTPFEKGLHVVEVTYDDVPIPNSPFKVAVTEGC 112
Score = 23.7 bits (51), Expect = 8.0
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
Query: 133 SPYLCQV---YDASKVKIEHKGLS--NIVVNDPISF 163
P +V D S++K+ G+ ++ F
Sbjct: 2 FPARVKVEPAVDTSRIKVFGPGIEGKDVFREATTDF 37
>d2dmca1 b.1.18.10 (A:8-110) Filamin b {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 61.5 bits (149), Expect = 1e-13
Identities = 15/89 (16%), Positives = 28/89 (31%)
Query: 54 SGSGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTP 113
+ Q + G F L+ S + +P G P + ++ F P
Sbjct: 11 TDDSRRCSQVKLGSAADFLLDISETDLSSLTASIKAPSGRDEPCLLKRLPNNHIGISFIP 70
Query: 114 TTTGVYKIDVLQGARPVRGSPYLCQVYDA 142
G + + + + V SP V +
Sbjct: 71 REVGEHLVSIKKNGNHVANSPVSIMVVQS 99
Score = 29.9 bits (67), Expect = 0.047
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 130 VRGSPYLCQVYDASKVKIEHKGLSNIVVNDPISFKCKSTE 169
+ GSP+ ++ D S + S + + F +E
Sbjct: 1 IPGSPFTAKITDDS------RRCSQVKLGSAADFLLDISE 34
>d2dj4a1 b.1.18.10 (A:8-108) Filamin b {Human (Homo sapiens) [TaxId:
9606]}
Length = 101
Score = 61.1 bits (148), Expect = 2e-13
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Query: 44 VVDPAVGREPSGSGLGLYQA-RSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQ 102
VVDP+ + +G GL R+ ++ SFT+++ + +V V P+G PV
Sbjct: 1 VVDPS---KVKIAGPGLGSGVRARVLQSFTVDSSKAGLAPLEVRVLGPRGLVEPVNVVDN 57
Query: 103 KFANLLAEFTPTTTGVYKIDVLQGARPVRGSPYLCQV---YDAS 143
+TP+ G Y + V + SP+ +V YDAS
Sbjct: 58 GDGTHTVTYTPSQEGPYMVSVKYADEEIPRSPFKVKVLPTYDAS 101
Score = 26.4 bits (58), Expect = 0.82
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 139 VYDASKVKIEHKGLSN-IVVNDPISF 163
V D SKVKI GL + + SF
Sbjct: 1 VVDPSKVKIAGPGLGSGVRARVLQSF 26
>d2nqca1 b.1.18.10 (A:2482-2578) Filamin C {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 60.3 bits (146), Expect = 2e-13
Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 4/87 (4%)
Query: 56 SGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTT 115
G GL +G+ + F + T S V + P + R + +TP
Sbjct: 10 YGPGLEGGTTGVSSEFIVNTLNAGSGALSVTIDGPSKVQLDCRECPEGHV---VTYTPMA 66
Query: 116 TGVYKIDVL-QGARPVRGSPYLCQVYD 141
G Y I + G + + GSP+ +V
Sbjct: 67 PGNYLIAIKYGGPQHIVGSPFKAKVTG 93
Score = 27.6 bits (61), Expect = 0.36
Identities = 5/30 (16%), Positives = 6/30 (20%)
Query: 140 YDASKVKIEHKGLSNIVVNDPISFKCKSTE 169
D V GL F +
Sbjct: 2 GDPGLVSAYGPGLEGGTTGVSSEFIVNTLN 31
>d2dica1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId:
9606]}
Length = 98
Score = 59.9 bits (145), Expect = 3e-13
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Query: 56 SGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTT 115
G GL +A + N FT+ T G + V P + + C K + AE+ P
Sbjct: 10 QGPGLKEAFTNKPNVFTVVTRGAGIGGLGITVEGPSESKIN--CRDNKDGSCSAEYIPFA 67
Query: 116 TGVYKIDVLQGARPVRGSPYLCQVYDASKV 145
G Y +++ G + GSP+ V D
Sbjct: 68 PGDYDVNITYGGAHIPGSPFRVPVKDVVDP 97
Score = 27.2 bits (60), Expect = 0.47
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 140 YDASKVKIEHKGLSNIVVNDPISF 163
S+V+ + GL N P F
Sbjct: 2 CQPSRVQAQGPGLKEAFTNKPNVF 25
>d2d7ma1 b.1.18.10 (A:8-109) Filamin C {Human (Homo sapiens) [TaxId:
9606]}
Length = 102
Score = 59.2 bits (143), Expect = 7e-13
Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 3/93 (3%)
Query: 54 SGSGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTP 113
SG GL + + FT++ V + P+G + P
Sbjct: 10 SGPGLNASGIPASLPVEFTIDARDAGEGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLP 69
Query: 114 TTTGVYKIDVLQGARPVRGSPYLCQV---YDAS 143
+G Y I + G + SP+ DAS
Sbjct: 70 DMSGRYTITIKYGGDEIPYSPFRIHALPTGDAS 102
Score = 25.3 bits (55), Expect = 2.4
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 140 YDASKVKIEHKGL--SNIVVNDPISFK 164
+DASKV+ GL S I + P+ F
Sbjct: 2 HDASKVRASGPGLNASGIPASLPVEFT 28
>d2dmba1 b.1.18.10 (A:8-118) Filamin b {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 59.6 bits (144), Expect = 8e-13
Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 1/94 (1%)
Query: 56 SGLGLYQA-RSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPT 114
+G G+ ++G F ++ + V +P G + + +T
Sbjct: 10 TGPGIASTVKTGEEVGFVVDAKTAGKGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAA 69
Query: 115 TTGVYKIDVLQGARPVRGSPYLCQVYDASKVKIE 148
G Y I V G + SP+ D +E
Sbjct: 70 KPGTYVIYVRFGGVDIPNSPFTVMATDGEVTAVE 103
>d2j3sa2 b.1.18.10 (A:2149-2236) Filamin b {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 57.2 bits (138), Expect = 3e-12
Identities = 17/82 (20%), Positives = 28/82 (34%)
Query: 62 QARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTTTGVYKI 121
A G +L+ ++ + VTSP G + + F P G + +
Sbjct: 5 VANVGSHCDLSLKIPEISIQDMTAQVTSPSGKTHEAEIVEGENHTYCIRFVPAEMGTHTV 64
Query: 122 DVLQGARPVRGSPYLCQVYDAS 143
V + V GSP+ V
Sbjct: 65 SVKYKGQHVPGSPFQFTVGPLG 86
>d1qfha1 b.1.18.10 (A:646-749) F-actin cross-linking gelation factor
(ABP-120) repeats {Dictyostelium discoideum [TaxId:
44689]}
Length = 104
Score = 57.3 bits (138), Expect = 4e-12
Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 7/93 (7%)
Query: 56 SGLGLYQARSGIVNSFTLET-------CGVASSEFDVIVTSPQGAAVPVRCYQQKFANLL 108
G GL + FT+ F+V + P G V +
Sbjct: 12 EGEGLVKVFDNAPAEFTIFAVDTKGVARTDGGDPFEVAINGPDGLVVDAKVTDNNDGTYG 71
Query: 109 AEFTPTTTGVYKIDVLQGARPVRGSPYLCQVYD 141
+ G Y ++V P++ P + +
Sbjct: 72 VVYDAPVEGNYNVNVTLRGNPIKNMPIDVKCIE 104
Score = 24.6 bits (53), Expect = 4.2
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 141 DASKVKIEHKGLSNIVVNDPISFK 164
A E +GL + N P F
Sbjct: 5 SAEHSYAEGEGLVKVFDNAPAEFT 28
>d2di9a1 b.1.18.10 (A:8-125) Filamin b {Human (Homo sapiens) [TaxId:
9606]}
Length = 118
Score = 57.3 bits (138), Expect = 6e-12
Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 2/105 (1%)
Query: 38 CPMEVPVVDPAVGREPSGSGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPV 97
P V P + G GL G FT++T G + + V P +
Sbjct: 12 SPYTVEASLPPDPSKVKAHGPGLEGGLVGKPAEFTIDTKGAGTGGLGLTVEGPCE--AKI 69
Query: 98 RCYQQKFANLLAEFTPTTTGVYKIDVLQGARPVRGSPYLCQVYDA 142
C + PT G Y +++L + GSP+ +
Sbjct: 70 ECSDNGDGTCSVSYLPTKPGEYFVNILFEEVHIPGSPFKADIEMP 114
Score = 39.6 bits (92), Expect = 2e-05
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 122 DVLQGARPVRGSPYLCQVY---DASKVKIEHKGLSNIVVNDPISFKC 165
DV PV GSPY + D SKVK GL +V P F
Sbjct: 1 DVTYDGHPVPGSPYTVEASLPPDPSKVKAHGPGLEGGLVGKPAEFTI 47
>d2w0pa1 b.1.18.10 (A:2237-2328) Filamin a {Human (Homo sapiens)
[TaxId: 9606]}
Length = 92
Score = 56.5 bits (136), Expect = 8e-12
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 56 SGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTT 115
G GL +A +G+ F++ T + + V P + +K + +
Sbjct: 8 GGPGLERAEAGVPAEFSIWTREAGAGGLAIAVEGPSK--AEISFEDRKDGSCGVAYVVQE 65
Query: 116 TGVYKIDVLQGARPVRGSPYLCQVYD 141
G Y++ V + SP++ V
Sbjct: 66 PGDYEVSVKFNEEHIPDSPFVVPVAS 91
Score = 24.9 bits (54), Expect = 2.8
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 142 ASKVKIEHKGLSNIVVNDPISF 163
A KV+ GL P F
Sbjct: 2 AHKVRAGGPGLERAEAGVPAEF 23
>d2d7na1 b.1.18.10 (A:8-87) Filamin C {Human (Homo sapiens) [TaxId:
9606]}
Length = 80
Score = 55.2 bits (133), Expect = 2e-11
Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 70 SFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTTTGVYKIDVLQGARP 129
+ + V E V P G K + + PT G++++ +
Sbjct: 5 NLVIP-FAVQKGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGNH 63
Query: 130 VRGSPYLCQVYDAS 143
+ GSP V +
Sbjct: 64 IPGSPLQFYVDAIN 77
>d2bp3a1 b.1.18.10 (A:1863-1954) Filamin a {Human (Homo sapiens)
[TaxId: 9606]}
Length = 92
Score = 55.4 bits (133), Expect = 2e-11
Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 2/84 (2%)
Query: 56 SGLGLYQARSGIVNSFTLETCGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTT 115
G GL +FT+ T + + P A + C + + P
Sbjct: 9 YGPGLTHGVVNKPATFTVNTKDAGEGGLSLAIEGPSKAEIS--CTDNQDGTCSVSYLPVL 66
Query: 116 TGVYKIDVLQGARPVRGSPYLCQV 139
G Y I V + V GSP+ +V
Sbjct: 67 PGDYSILVKYNEQHVPGSPFTARV 90
Score = 25.7 bits (56), Expect = 1.4
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 141 DASKVKIEHKGLSNIVVNDPISFK 164
+ V GL++ VVN P +F
Sbjct: 2 NCGHVTAYGPGLTHGVVNKPATFT 25
>d1wlha1 b.1.18.10 (A:547-647) F-actin cross-linking gelation factor
(ABP-120) repeats {Dictyostelium discoideum [TaxId:
44689]}
Length = 101
Score = 50.1 bits (119), Expect = 2e-09
Identities = 18/89 (20%), Positives = 23/89 (25%), Gaps = 5/89 (5%)
Query: 56 SGLGLYQARSGIVNSFTLETCG-----VASSEFDVIVTSPQGAAVPVRCYQQKFANLLAE 110
G GL + F + +VT A V E
Sbjct: 11 EGPGLDGGECFQPSKFKIHAVDPDGVHRTDGGDGFVVTIEGPAPVDPVMVDNGDGTYDVE 70
Query: 111 FTPTTTGVYKIDVLQGARPVRGSPYLCQV 139
F P G Y I++ V G P V
Sbjct: 71 FEPKEAGDYVINLTLDGDNVNGFPKTVTV 99
Score = 26.2 bits (57), Expect = 1.2
Identities = 7/24 (29%), Positives = 7/24 (29%)
Query: 140 YDASKVKIEHKGLSNIVVNDPISF 163
D K E GL P F
Sbjct: 3 ADPEKSYAEGPGLDGGECFQPSKF 26
>d1qfha2 b.1.18.10 (A:750-857) F-actin cross-linking gelation factor
(ABP-120) repeats {Dictyostelium discoideum [TaxId:
44689]}
Length = 108
Score = 45.8 bits (108), Expect = 1e-07
Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 12/88 (13%)
Query: 70 SFTLET-------CGVASSEFDVIVTSPQGAAVPVRCYQQKFANLLAEFTPTTTGVYKID 122
+FT+ +F+V +T P + + + A ++ G +
Sbjct: 13 TFTVAAKNKKGEVKTYGGDKFEVSITGP-AEEITLDAIDNQDGTYTAAYSLVGNGRFSTG 71
Query: 123 VLQGARPVRGSPYLCQVY----DASKVK 146
V + + GSP+ + +VK
Sbjct: 72 VKLNGKHIEGSPFKQVLGNPGKKNPEVK 99
>d2j01u1 a.144.2.1 (U:2-118) Ribosomal protein L20 {Thermus
thermophilus [TaxId: 274]}
Length = 117
Score = 28.9 bits (65), Expect = 0.16
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 126 GARPVRGSPY--LCQVYDASKVKIEHKGLSNIVVNDPISFKC 165
R G Y + ++++ K L+++ V +P F
Sbjct: 67 ACRQ-HGLNYSTFIHGLKKAGIEVDRKNLADLAVREPQVFAE 107
>d1gyza_ a.144.2.1 (A:) Ribosomal protein L20 {Aquifex aeolicus
[TaxId: 63363]}
Length = 60
Score = 27.2 bits (61), Expect = 0.25
Identities = 6/22 (27%), Positives = 16/22 (72%)
Query: 143 SKVKIEHKGLSNIVVNDPISFK 164
+ ++++ K L+++ V DP +F+
Sbjct: 26 AGIELDRKILADMAVRDPQAFE 47
>d2gyco1 a.144.2.1 (O:2-116) Ribosomal protein L20 {Escherichia coli
[TaxId: 562]}
Length = 115
Score = 27.3 bits (61), Expect = 0.48
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 143 SKVKIEHKGLSNIVVNDPISFKC 165
+ V+I+ K L++I V D ++F
Sbjct: 84 ASVEIDRKILADIAVFDKVAFTA 106
>d2zjrn1 a.144.2.1 (N:2-118) Ribosomal protein L20 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 117
Score = 27.3 bits (61), Expect = 0.48
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 132 GSPY--LCQVYDASKVKIEHKGLSNIVVNDPISFKC 165
G Y + + + K L++I +P +FK
Sbjct: 72 GMNYSTFINGLKRANIDLNRKVLADIAAREPEAFKA 107
>d1ztwa1 e.8.1.2 (A:24-278) MMLV reverse transcriptase {Moloney
murine leukemia virus, MoMLV [TaxId: 11801]}
Length = 255
Score = 26.1 bits (56), Expect = 2.1
Identities = 8/38 (21%), Positives = 10/38 (26%), Gaps = 4/38 (10%)
Query: 102 QKFANLLAEFTPTTTGV----YKIDVLQGARPVRGSPY 135
F AE V I + + PV Y
Sbjct: 4 SDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQY 41
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853
{Thermotoga maritima [TaxId: 2336]}
Length = 161
Score = 25.6 bits (56), Expect = 2.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 45 VDPAVGREPSGSGLGLYQARS 65
VD ++ E G+GLGL +
Sbjct: 111 VDSSLTYEVPGTGLGLAITKE 131
>d1lp3a_ b.121.5.2 (A:) Dependovirus capsid protein
{Adeno-associated virus, aav-2 [TaxId: 272636]}
Length = 519
Score = 25.6 bits (56), Expect = 3.9
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 109 AEFTPTTTGVYKIDVLQGARPV 130
+FT T GVY G R +
Sbjct: 494 VDFTVDTNGVYSEPRPIGTRYL 515
>d1h6ha_ d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 143
Score = 24.3 bits (52), Expect = 6.5
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 26 ARTLREETSFRSCPMEVP----VVDPAVGREPS 54
A+ LR E+ F P +V + D R +
Sbjct: 3 AQQLRAESDFEQLPDDVAISANIADIEEKRGFT 35
>d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 238
Score = 24.4 bits (53), Expect = 7.3
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 2 IFFTKSCILLSEKAPSWISYGLVQ----ARTLREETSFRSCPMEV 42
++ + K +I + V +R + TS R+ +EV
Sbjct: 159 LYPLDNAFFFLTKPTLYIPFSDVSMVNISRAGQTSTSSRTFDLEV 203
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.396
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 607,113
Number of extensions: 25920
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 43
Length of query: 171
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,322,926
Effective search space: 121709192
Effective search space used: 121709192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.1 bits)