Query psy15727
Match_columns 195
No_of_seqs 116 out of 400
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 19:52:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15727.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15727hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02838 3-hydroxyacyl-CoA deh 100.0 5E-68 1.1E-72 451.2 16.6 174 9-182 45-219 (221)
2 PF04387 PTPLA: Protein tyrosi 100.0 8.2E-67 1.8E-71 426.3 12.9 164 19-182 1-164 (164)
3 KOG3187|consensus 100.0 4.9E-61 1.1E-65 406.7 12.3 179 7-185 44-222 (223)
4 COG5198 Ptpl Protein tyrosine 100.0 6.1E-47 1.3E-51 309.4 12.3 159 12-184 45-203 (209)
5 COG3114 CcmD Heme exporter pro 43.2 41 0.00089 23.9 3.6 23 162-184 29-51 (67)
6 PF15048 OSTbeta: Organic solu 42.5 37 0.00079 27.0 3.6 38 138-180 31-68 (125)
7 PF03814 KdpA: Potassium-trans 38.2 17 0.00036 35.5 1.3 74 96-176 162-275 (552)
8 PF05296 TAS2R: Mammalian tast 30.0 1.1E+02 0.0024 27.0 5.1 47 83-129 104-152 (303)
9 PF12669 P12: Virus attachment 26.2 69 0.0015 21.8 2.4 15 162-176 12-26 (58)
10 COG4512 AgrB Membrane protein 25.1 1.8E+02 0.0038 24.8 5.1 33 98-130 66-100 (198)
11 PF07297 DPM2: Dolichol phosph 24.6 45 0.00098 24.4 1.4 15 163-177 63-77 (78)
12 PF06324 Pigment_DH: Pigment-d 23.2 47 0.001 17.8 0.9 11 25-35 3-13 (18)
13 PF06305 DUF1049: Protein of u 21.8 1.3E+02 0.0029 20.0 3.3 21 157-177 30-50 (68)
14 PRK13454 F0F1 ATP synthase sub 21.8 1.6E+02 0.0036 24.1 4.4 35 147-181 33-70 (181)
15 PRK06231 F0F1 ATP synthase sub 21.1 66 0.0014 27.1 1.9 54 127-181 34-87 (205)
No 1
>PLN02838 3-hydroxyacyl-CoA dehydratase subunit of elongase
Probab=100.00 E-value=5e-68 Score=451.19 Aligned_cols=174 Identities=32% Similarity=0.601 Sum_probs=168.3
Q ss_pred cchhHHHHHHHHHHHHHHHHhhcccccCCcchhHHHHHhhhhhhhhhhcccccccccchhHHHHHHHhhhhhhhhhHHHH
Q psy15727 9 RNVPFVAEFEVKTADTDLVYSLCSIVRSNPCSVLFLIVCRLLIVWGVLMSSIPALHNTGLSLLILAWSTHEITRYMFYCL 88 (195)
Q Consensus 9 ~~~~~~~~~~Q~~A~lEv~H~~~GlvrS~~~tt~~QV~sR~~ivw~v~~~~p~~~~~~~~~~l~~aWsi~EviRY~yY~~ 88 (195)
.+++..++++|++|++||+|+++|+||||+.||++||+||++++|+|++..||+++++.++.|++|||++|+||||||++
T Consensus 45 ~~v~~~l~~~QtlAilEilHa~~GlVrS~v~~T~~QV~sR~~iv~~v~~~~p~~~~~~~~~~l~~aWs~tEvIRY~yY~~ 124 (221)
T PLN02838 45 AAVERPLQLAQTAAVLEILHGLVGLVRSPVSATLPQIGSRLFLTWGILWSFPEVRSHILVTSLVISWSITEIIRYSFFGM 124 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCcchHHHHHHHHHHHHHHHhhcCcchhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hh-cCCCchhHHHhhhccceeecccchhHHHHHHHhhhhhhhccCcccccCCCCCCccchhHHHHHHHHHHHhhhHHHHH
Q psy15727 89 HV-MDCLPYFMIWLRYSAFIILYPLGTAGELLCFYSSQQYFSQYPKWYLDLPEPWDSVFSYRTFLIIVIMFYIPVFPSMY 167 (195)
Q Consensus 89 ~l-~~~~p~~L~WLRYs~FivLYPlGv~~E~~~i~~aLp~~~~~~~~s~~mPn~~n~~f~~~~~l~~~l~~yipg~~~ly 167 (195)
++ +|.+|++|+|||||+|+||||+|+.||+.+||+|+|++++++.|+.+|||++|++||+++++++++++|+||+|+||
T Consensus 125 ~~~~~~~p~~L~WLRYt~FivLYPlGi~~E~~~i~~al~~~~~~~~~s~~~Pn~~n~sf~~~~~l~~~l~~YiPg~~~ly 204 (221)
T PLN02838 125 KEAFGFAPSWLLWLRYSTFLLLYPTGITSEVGLIYIALPYMKASEKYCLRMPNKWNFSFDYFYASILVLAIYVPGSPHMY 204 (221)
T ss_pred HHhcCCCcHHHHHHHHhccceecchHHHHHHHHHHHhchhhhcccccchhcCcccccchhHHHHHHHHHHHHHhhHHHHH
Confidence 85 59999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccc
Q psy15727 168 FHLLSKRKRALKRLK 182 (195)
Q Consensus 168 ~hM~~QRkk~l~~~~ 182 (195)
+||+|||||+++++|
T Consensus 205 ~hM~~QRkK~l~~k~ 219 (221)
T PLN02838 205 SYMLGQRKKALSKSK 219 (221)
T ss_pred HHHHHHHHHHhcccc
Confidence 999999999997543
No 2
>PF04387 PTPLA: Protein tyrosine phosphatase-like protein, PTPLA; InterPro: IPR007482 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This family includes the mammalian protein tyrosine phosphatase-like protein, PTPLA. A significant variation of PTPLA from other protein tyrosine phosphatases is the presence of proline instead of catalytic arginine at the active site. It is thought that PTPLA proteins have a role in the development, differentiation, and maintenance of a number of tissue types [].
Probab=100.00 E-value=8.2e-67 Score=426.29 Aligned_cols=164 Identities=37% Similarity=0.790 Sum_probs=162.0
Q ss_pred HHHHHHHHHHhhcccccCCcchhHHHHHhhhhhhhhhhcccccccccchhHHHHHHHhhhhhhhhhHHHHHhcCCCchhH
Q psy15727 19 VKTADTDLVYSLCSIVRSNPCSVLFLIVCRLLIVWGVLMSSIPALHNTGLSLLILAWSTHEITRYMFYCLHVMDCLPYFM 98 (195)
Q Consensus 19 Q~~A~lEv~H~~~GlvrS~~~tt~~QV~sR~~ivw~v~~~~p~~~~~~~~~~l~~aWsi~EviRY~yY~~~l~~~~p~~L 98 (195)
|++|++||+|+++|+||||+.+|++||+||++++|+++...||+++++++++|++|||++|+|||+||+++++|.+|++|
T Consensus 1 Q~~a~lEi~h~~~Glv~S~~~~t~~Qv~sR~~vv~~v~~~~p~~~~~~~~~~l~~aWsl~EviRY~yY~~~l~~~~p~~L 80 (164)
T PF04387_consen 1 QTLAVLEILHAALGLVRSPVLTTFMQVFSRLFVVWGVIYPFPEVQSSPAVPLLLIAWSLTEVIRYPYYALKLLGIVPYWL 80 (164)
T ss_pred CchHHHHHHHHHhccccCccHHHHHHHHHHHHeehhhhccccccccccchhhHHHHHHhhhcchhHHHHHHhcCCCchHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccceeecccchhHHHHHHHhhhhhhhccCcccccCCCCCCccchhHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh
Q psy15727 99 IWLRYSAFIILYPLGTAGELLCFYSSQQYFSQYPKWYLDLPEPWDSVFSYRTFLIIVIMFYIPVFPSMYFHLLSKRKRAL 178 (195)
Q Consensus 99 ~WLRYs~FivLYPlGv~~E~~~i~~aLp~~~~~~~~s~~mPn~~n~~f~~~~~l~~~l~~yipg~~~ly~hM~~QRkk~l 178 (195)
+|||||+|+||||+|+.||+.++++|+|++++++.|+.+|||.+|++|++++++.+++++|+||+|+||+||+|||||++
T Consensus 81 ~WLRYs~FivLYPlG~~~E~~~~~~al~~~~~~~~~~~~~pn~~n~~~~~~~~~~~~l~~y~pg~~~ly~hM~~qRrK~l 160 (164)
T PF04387_consen 81 TWLRYSAFIVLYPLGILSELLLIYRALPYIKETKRYSVRMPNSWNFSFSYYYFLIFVLLLYIPGFPFLYSHMLKQRRKKL 160 (164)
T ss_pred HHHHHhhHhhccchHHHHHHHHHHHhCcccccCCeeeeecCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q psy15727 179 KRLK 182 (195)
Q Consensus 179 ~~~~ 182 (195)
+++|
T Consensus 161 ~~~~ 164 (164)
T PF04387_consen 161 GKKK 164 (164)
T ss_pred ccCC
Confidence 9765
No 3
>KOG3187|consensus
Probab=100.00 E-value=4.9e-61 Score=406.73 Aligned_cols=179 Identities=31% Similarity=0.646 Sum_probs=174.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhcccccCCcchhHHHHHhhhhhhhhhhcccccccccchhHHHHHHHhhhhhhhhhHH
Q psy15727 7 SERNVPFVAEFEVKTADTDLVYSLCSIVRSNPCSVLFLIVCRLLIVWGVLMSSIPALHNTGLSLLILAWSTHEITRYMFY 86 (195)
Q Consensus 7 ~~~~~~~~~~~~Q~~A~lEv~H~~~GlvrS~~~tt~~QV~sR~~ivw~v~~~~p~~~~~~~~~~l~~aWsi~EviRY~yY 86 (195)
+.+++.+.+++||++|++|++|+++|+|+|++++|++||.||++++|++++..|+++.++++..++.+|+++|++||+||
T Consensus 44 ~y~si~~~l~~~Qtla~lEi~~~~~g~v~S~~v~t~~Qv~sRl~il~~i~~~~~~~~~~~~~~~l~~~ws~tEIiRY~fY 123 (223)
T KOG3187|consen 44 LYDSIEKVLKFCQTLALLEIINASFGLVKSSPVVTLFQVSSRLFILWGIFHMCSIIQASAVVFFLLIAWSLTEIIRYSFY 123 (223)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccccCCceeeeeeecccceehhhhhhccchhhccchHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCchhHHHhhhccceeecccchhHHHHHHHhhhhhhhccCcccccCCCCCCccchhHHHHHHHHHHHhhhHHHH
Q psy15727 87 CLHVMDCLPYFMIWLRYSAFIILYPLGTAGELLCFYSSQQYFSQYPKWYLDLPEPWDSVFSYRTFLIIVIMFYIPVFPSM 166 (195)
Q Consensus 87 ~~~l~~~~p~~L~WLRYs~FivLYPlGv~~E~~~i~~aLp~~~~~~~~s~~mPn~~n~~f~~~~~l~~~l~~yipg~~~l 166 (195)
+++++|..|++++|||||+|++|||+|+.||+.++++++|+.++++.++++|||++|++||+++|+++++++|+||+|++
T Consensus 124 ~f~~~~~~p~~l~wlRYt~Fi~LYP~Gi~~E~l~i~~al~~~~~~~~~sv~~pn~~n~~f~~~~fL~i~ml~Yipgf~~l 203 (223)
T KOG3187|consen 124 AFNLLGVLPKLLTWLRYTLFILLYPIGITSELLTLYAALPAAGETERFSVVMPNKLNISFDFFSFLWIVMLLYIPGFYQL 203 (223)
T ss_pred HHHhccCCchhhhHhhhhhheeeecceehhhHHHHHHHHHHhcccceeEEEcCccccchhHHHHHHHHHHHHHHcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccccccc
Q psy15727 167 YFHLLSKRKRALKRLKINQ 185 (195)
Q Consensus 167 y~hM~~QRkk~l~~~~~~~ 185 (195)
|+||.+||||.++++++|+
T Consensus 204 ~~hm~~QRkk~l~~~r~~~ 222 (223)
T KOG3187|consen 204 YSHMLKQRKKILKKKRKKK 222 (223)
T ss_pred HHHHHHHHHhhcccccccC
Confidence 9999999999999877663
No 4
>COG5198 Ptpl Protein tyrosine phosphatase-like protein (contains Pro instead of catalytic Arg) [General function prediction only]
Probab=100.00 E-value=6.1e-47 Score=309.40 Aligned_cols=159 Identities=30% Similarity=0.512 Sum_probs=139.3
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccCCcchhHHHHHhhhhhhhhhhcccccccccchhHHHHHHHhhhhhhhhhHHHHHhc
Q psy15727 12 PFVAEFEVKTADTDLVYSLCSIVRSNPCSVLFLIVCRLLIVWGVLMSSIPALHNTGLSLLILAWSTHEITRYMFYCLHVM 91 (195)
Q Consensus 12 ~~~~~~~Q~~A~lEv~H~~~GlvrS~~~tt~~QV~sR~~ivw~v~~~~p~~~~~~~~~~l~~aWsi~EviRY~yY~~~l~ 91 (195)
-.+..++|++|++|++|+.+|.|+|+++||.+||.||++++|||++++-.+-++|.+..+.+|||++|++||.||++++=
T Consensus 45 ~~va~lvQt~ai~E~~ns~~g~v~S~~LtTv~Qv~SRl~ivwgvf~p~~~~i~s~~y~s~~~aWsiteivRYafY~F~ln 124 (209)
T COG5198 45 LRVAGLVQTFAIMEAANSSAGKVNSRYLTTVMQVISRLFIVWGVFYPYCGIINSWTYPSITTAWSITEIVRYAFYTFRLN 124 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 38999999999999999999999999999999999999999999976655555899999999999999999999999985
Q ss_pred CCCchhHHHhhhccceeecccchhHHHHHHHhhhhhhhccCcccccCCCCCCccchhHHHHHHHHHHHhhhHHHHHHHHH
Q psy15727 92 DCLPYFMIWLRYSAFIILYPLGTAGELLCFYSSQQYFSQYPKWYLDLPEPWDSVFSYRTFLIIVIMFYIPVFPSMYFHLL 171 (195)
Q Consensus 92 ~~~p~~L~WLRYs~FivLYPlGv~~E~~~i~~aLp~~~~~~~~s~~mPn~~n~~f~~~~~l~~~l~~yipg~~~ly~hM~ 171 (195)
| .|..++|||||+|.+|||+|+++|+.|++.+..-.+. .||. ....+.+++++|+||||+||+||+
T Consensus 125 g-~p~~l~~lRYNlFlilyPiG~~sE~~~~~~~~naa~~--~~Sl-----------lk~vl~~~ml~YiPGf~~lf~HMl 190 (209)
T COG5198 125 G-IPNTLRVLRYNLFLILYPIGFVSEMYCLRALYNAAGK--IFSL-----------LKVVLPIVMLLYIPGFIFLFSHML 190 (209)
T ss_pred C-CchhhhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHH--HHHH-----------HHHHHHHHHHHhCCcHHHHHHHHH
Confidence 5 8999999999999999999999999999998765544 3332 124456688899999999999999
Q ss_pred HHHHhhhcccccc
Q psy15727 172 SKRKRALKRLKIN 184 (195)
Q Consensus 172 ~QRkk~l~~~~~~ 184 (195)
+||||..+.++.|
T Consensus 191 aQRkk~~K~~r~~ 203 (209)
T COG5198 191 AQRKKSRKVKRYK 203 (209)
T ss_pred HHHHHHHHHHHHh
Confidence 9999997644333
No 5
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=43.17 E-value=41 Score=23.91 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHhhhcccccc
Q psy15727 162 VFPSMYFHLLSKRKRALKRLKIN 184 (195)
Q Consensus 162 g~~~ly~hM~~QRkk~l~~~~~~ 184 (195)
..-.+..|-++|||+.|.+..++
T Consensus 29 ~l~~l~v~sv~qrr~iL~~v~r~ 51 (67)
T COG3114 29 PLAVLVVHSVLQRRAILRGVARQ 51 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999885444
No 6
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=42.51 E-value=37 Score=27.02 Aligned_cols=38 Identities=16% Similarity=0.337 Sum_probs=24.1
Q ss_pred CCCCCCccchhHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcc
Q psy15727 138 LPEPWDSVFSYRTFLIIVIMFYIPVFPSMYFHLLSKRKRALKR 180 (195)
Q Consensus 138 mPn~~n~~f~~~~~l~~~l~~yipg~~~ly~hM~~QRkk~l~~ 180 (195)
=|-+||++. +.+..++.+.|+..|-..-.+.|+++..+
T Consensus 31 D~tpWNysi-----L~Ls~vvlvi~~~LLgrsi~ANRnrK~~~ 68 (125)
T PF15048_consen 31 DATPWNYSI-----LALSFVVLVISFFLLGRSIQANRNRKMQP 68 (125)
T ss_pred CCCCcchHH-----HHHHHHHHHHHHHHHHHHhHhcccccccc
Confidence 366788863 33334445557777777777777776653
No 7
>PF03814 KdpA: Potassium-transporting ATPase A subunit; InterPro: IPR004623 Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli. It is composed of three membrane-bound subunits, KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is the K+-transporting subunit of this complex. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilise the complex. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolysing (energy providing) subunit [].; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0005886 plasma membrane
Probab=38.20 E-value=17 Score=35.54 Aligned_cols=74 Identities=19% Similarity=0.435 Sum_probs=47.6
Q ss_pred hhHHHhhhccceeecccchhHHHHHHHhhhh---------------------------------------hhhccCcccc
Q psy15727 96 YFMIWLRYSAFIILYPLGTAGELLCFYSSQQ---------------------------------------YFSQYPKWYL 136 (195)
Q Consensus 96 ~~L~WLRYs~FivLYPlGv~~E~~~i~~aLp---------------------------------------~~~~~~~~s~ 136 (195)
-|.+..|- ...+|-|+.+..-++++.+..| ++..+..+++
T Consensus 162 FwvDl~R~-~l~vLLPlS~v~AliLv~qGVpQtf~~~~~v~tleg~~Q~i~~GPvAs~eaIK~LGTNGGGff~aNSAhPf 240 (552)
T PF03814_consen 162 FWVDLVRS-TLRVLLPLSFVFALILVSQGVPQTFSGYVTVTTLEGATQTIPLGPVASQEAIKQLGTNGGGFFGANSAHPF 240 (552)
T ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHHhcCccccccCCceeeeeccceeeeccCccHHHHHHHHhccCCCcccCCCCCCCC
Confidence 45555553 3345567777777777776665 3334455666
Q ss_pred cCCCCCCccchhHHHHHHHHHHHhh-hHHHHHHHHHHHHHh
Q psy15727 137 DLPEPWDSVFSYRTFLIIVIMFYIP-VFPSMYFHLLSKRKR 176 (195)
Q Consensus 137 ~mPn~~n~~f~~~~~l~~~l~~yip-g~~~ly~hM~~QRkk 176 (195)
|-|+++ .-++-.+.++.|| ..++.|.+|.+.||+
T Consensus 241 ENPt~~------sN~~e~~~illIP~al~~~fG~~~~~~rq 275 (552)
T PF03814_consen 241 ENPTPL------SNFLEMLSILLIPAALPFTFGRMVGDRRQ 275 (552)
T ss_pred CCChHH------HHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 666554 2344555666666 679999999998876
No 8
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=30.01 E-value=1.1e+02 Score=26.97 Aligned_cols=47 Identities=23% Similarity=0.432 Sum_probs=31.3
Q ss_pred hhHHHHHhcCCCchhHHHhhhccceeecccchhHHHHHH--Hhhhhhhh
Q psy15727 83 YMFYCLHVMDCLPYFMIWLRYSAFIILYPLGTAGELLCF--YSSQQYFS 129 (195)
Q Consensus 83 Y~yY~~~l~~~~p~~L~WLRYs~FivLYPlGv~~E~~~i--~~aLp~~~ 129 (195)
--||..++.+...+...||+-..=-+.+.+=..+..... ...+|...
T Consensus 104 svfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~~~~~~ 152 (303)
T PF05296_consen 104 SVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLSIPLFI 152 (303)
T ss_pred HHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 358888988888899999986655555554455555555 34445443
No 9
>PF12669 P12: Virus attachment protein p12 family
Probab=26.17 E-value=69 Score=21.81 Aligned_cols=15 Identities=13% Similarity=0.157 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHh
Q psy15727 162 VFPSMYFHLLSKRKR 176 (195)
Q Consensus 162 g~~~ly~hM~~QRkk 176 (195)
.++.+..+++|++|+
T Consensus 12 ~~~v~~r~~~k~~K~ 26 (58)
T PF12669_consen 12 VAYVAIRKFIKDKKK 26 (58)
T ss_pred HHHHHHHHHHHHhhc
Confidence 445577889988876
No 10
>COG4512 AgrB Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]
Probab=25.12 E-value=1.8e+02 Score=24.76 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=21.8
Q ss_pred HHHhhhcccee--ecccchhHHHHHHHhhhhhhhc
Q psy15727 98 MIWLRYSAFII--LYPLGTAGELLCFYSSQQYFSQ 130 (195)
Q Consensus 98 L~WLRYs~Fiv--LYPlGv~~E~~~i~~aLp~~~~ 130 (195)
-+|+|+++|=. -=-+|++..-++++...||+-.
T Consensus 66 y~flR~na~GaHak~SI~Ctl~Sll~fv~~py~~~ 100 (198)
T COG4512 66 YTFLRVNAFGAHAKHSIGCTLLSLLMFVLIPYVPF 100 (198)
T ss_pred HHHHHHHcccccccccccchHHHHHHHHHHHHHHh
Confidence 46888888732 2234555566788888888755
No 11
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=24.62 E-value=45 Score=24.36 Aligned_cols=15 Identities=7% Similarity=0.180 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhh
Q psy15727 163 FPSMYFHLLSKRKRA 177 (195)
Q Consensus 163 ~~~ly~hM~~QRkk~ 177 (195)
.-++-..|+|++||+
T Consensus 63 g~f~g~vmik~~~kk 77 (78)
T PF07297_consen 63 GTFLGYVMIKSKKKK 77 (78)
T ss_pred HHHHHHHHhhccccc
Confidence 345677888888753
No 12
>PF06324 Pigment_DH: Pigment-dispersing hormone (PDH); InterPro: IPR009396 This family consists of several eukaryotic pigment-dispersing hormone (PDH) proteins. The pigment-dispersing hormone (PDH) is produced in the eyestalks of Crustacea where it induces light-adapting movements of pigment in the compound eye and regulates the pigment dispersion in the chromatophores [].; GO: 0005179 hormone activity, 0009416 response to light stimulus, 0005576 extracellular region
Probab=23.25 E-value=47 Score=17.80 Aligned_cols=11 Identities=27% Similarity=0.522 Sum_probs=9.0
Q ss_pred HHHHhhccccc
Q psy15727 25 DLVYSLCSIVR 35 (195)
Q Consensus 25 Ev~H~~~Glvr 35 (195)
|++++++|+-|
T Consensus 3 elINslLglpk 13 (18)
T PF06324_consen 3 ELINSLLGLPK 13 (18)
T ss_pred HHHHHHHcchh
Confidence 88999999754
No 13
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.85 E-value=1.3e+02 Score=20.04 Aligned_cols=21 Identities=14% Similarity=-0.042 Sum_probs=12.5
Q ss_pred HHHhhhHHHHHHHHHHHHHhh
Q psy15727 157 MFYIPVFPSMYFHLLSKRKRA 177 (195)
Q Consensus 157 ~~yipg~~~ly~hM~~QRkk~ 177 (195)
+-.+.|+.......+++|++.
T Consensus 30 ~G~llg~l~~~~~~~~~r~~~ 50 (68)
T PF06305_consen 30 LGALLGWLLSLPSRLRLRRRI 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 335556656666666666665
No 14
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=21.79 E-value=1.6e+02 Score=24.06 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHhhhHHH---HHHHHHHHHHhhhccc
Q psy15727 147 SYRTFLIIVIMFYIPVFPS---MYFHLLSKRKRALKRL 181 (195)
Q Consensus 147 ~~~~~l~~~l~~yipg~~~---ly~hM~~QRkk~l~~~ 181 (195)
.+.++++.++++|+....+ =...++.+|++...+.
T Consensus 33 q~~~~lI~F~iL~~ll~k~l~~PI~~~l~~R~~~I~~~ 70 (181)
T PRK13454 33 QIFWLLVTLVAIYFVLTRVALPRIGAVLAERQGTITND 70 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4555555566655544333 3568889999888653
No 15
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=21.08 E-value=66 Score=27.07 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=29.6
Q ss_pred hhhccCcccccCCCCCCccchhHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccc
Q psy15727 127 YFSQYPKWYLDLPEPWDSVFSYRTFLIIVIMFYIPVFPSMYFHLLSKRKRALKRL 181 (195)
Q Consensus 127 ~~~~~~~~s~~mPn~~n~~f~~~~~l~~~l~~yipg~~~ly~hM~~QRkk~l~~~ 181 (195)
-+++...+.--.||.+.+-...--|++++.+++-- ++.-...++.+|++...+.
T Consensus 34 ~~~~~~~~~~~~~~~~~~i~qlInFlIlv~lL~k~-l~kPi~~~L~~R~~~I~~~ 87 (205)
T PRK06231 34 ELKSKSIINELFPNFWVFIAHLIAFSILLLLGIFL-FWKPTQRFLNKRKELIEAE 87 (205)
T ss_pred hcCHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34444444445677665544443344443333221 2333788999999988763
Done!