Query psy15727
Match_columns 195
No_of_seqs 116 out of 400
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 19:52:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15727.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15727hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kpa_A ARNO(375-400); hydrolas 18.8 21 0.00071 20.1 -0.3 16 167-182 6-21 (26)
2 2a1i_A DNA excision repair pro 8.1 19 0.00065 28.1 -3.6 18 69-86 113-130 (146)
3 2rdd_B UPF0092 membrane protei 8.0 3.5E+02 0.012 15.5 2.9 13 165-177 15-27 (37)
4 4b19_A PEPA1; toxin, toxin apo 7.6 1.4E+02 0.005 17.1 0.9 14 164-177 17-30 (30)
5 1f32_A Major pepsin inhibitor 6.1 1.1E+02 0.0039 23.7 -0.1 25 170-194 113-137 (149)
6 2zw3_A GAP junction beta-2 pro 6.1 7.2E+02 0.025 20.3 4.9 20 149-168 76-95 (226)
7 3im4_C Dual specificity A kina 5.3 2.3E+02 0.0079 17.7 1.0 9 73-81 17-25 (45)
8 3p8c_D Wiskott-aldrich syndrom 5.1 1.8E+02 0.0062 24.8 0.6 29 18-50 39-67 (279)
9 3hb3_B Cytochrome C oxidase su 5.0 6E+02 0.021 21.5 3.9 53 124-176 27-92 (298)
10 3h8k_B Autocrine motility fact 4.2 3.7E+02 0.013 15.0 1.3 11 170-180 9-19 (28)
No 1
>2kpa_A ARNO(375-400); hydrolase; NMR {Synthetic} PDB: 2kpb_A
Probab=18.79 E-value=21 Score=20.10 Aligned_cols=16 Identities=25% Similarity=0.627 Sum_probs=12.1
Q ss_pred HHHHHHHHHhhhcccc
Q psy15727 167 YFHLLSKRKRALKRLK 182 (195)
Q Consensus 167 y~hM~~QRkk~l~~~~ 182 (195)
|-+|++.|||++...+
T Consensus 6 FYdml~~RKkKi~~~~ 21 (26)
T 2kpa_A 6 FYEMLAARKKRISVKK 21 (26)
T ss_dssp HHHHHTCTHHHHHCHH
T ss_pred HHHHHHHHHHHhcccc
Confidence 4489999999987543
No 2
>2a1i_A DNA excision repair protein ERCC-1; XPF, central domain, DNA repair, endonuclease, DNA binding protein; HET: DNA; 1.90A {Homo sapiens} SCOP: c.52.1.20 PDB: 2jnw_A* 2jpd_A*
Probab=8.12 E-value=19 Score=28.13 Aligned_cols=18 Identities=50% Similarity=0.765 Sum_probs=15.0
Q ss_pred HHHHHHHhhhhhhhhhHH
Q psy15727 69 SLLILAWSTHEITRYMFY 86 (195)
Q Consensus 69 ~~l~~aWsi~EviRY~yY 86 (195)
+++++|||.-|.-||.=.
T Consensus 113 ~TLiLawS~eEaa~Yle~ 130 (146)
T 2a1i_A 113 CTLILAWSPEEAGRYLET 130 (146)
T ss_dssp CEEEEESSHHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHH
Confidence 567889999999999753
No 3
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=8.01 E-value=3.5e+02 Score=15.55 Aligned_cols=13 Identities=23% Similarity=0.626 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHhh
Q psy15727 165 SMYFHLLSKRKRA 177 (195)
Q Consensus 165 ~ly~hM~~QRkk~ 177 (195)
.+|.-|.|-.||.
T Consensus 15 ifYFl~iRPQ~Kr 27 (37)
T 2rdd_B 15 IFYFMILRPQQKR 27 (37)
T ss_dssp HHHHHTHHHHHHH
T ss_pred HHHHHHhhhHHHH
Confidence 3455555544433
No 4
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=7.60 E-value=1.4e+02 Score=17.13 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhh
Q psy15727 164 PSMYFHLLSKRKRA 177 (195)
Q Consensus 164 ~~ly~hM~~QRkk~ 177 (195)
.-+|+|-++.|.|+
T Consensus 17 valF~hWL~~r~~k 30 (30)
T 4b19_A 17 IAFFSYWLSRRNTK 30 (30)
T ss_dssp HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhccCC
Confidence 46899999999763
No 5
>1f32_A Major pepsin inhibitor PI-3; proteinase inhibitor, hydrolase inhibitor; 1.75A {Ascaris suum} SCOP: d.62.1.1 PDB: 1f34_B*
Probab=6.10 E-value=1.1e+02 Score=23.75 Aligned_cols=25 Identities=12% Similarity=0.039 Sum_probs=3.8
Q ss_pred HHHHHHhhhcccccccchhcccCCC
Q psy15727 170 LLSKRKRALKRLKINQDTIKSAEGL 194 (195)
Q Consensus 170 M~~QRkk~l~~~~~~~~~~~~~~~~ 194 (195)
-+++|++.+..+...++.+|.+||+
T Consensus 113 a~eer~e~~~~~~~~~k~~k~~~~~ 137 (149)
T 1f32_A 113 AFEEQQENQPPSSGMPHGAVPAGGL 137 (149)
T ss_dssp HHHHC--------------------
T ss_pred HHHHHHhccchhhcCCCCCcccccC
Confidence 5788888888776655566666664
No 6
>2zw3_A GAP junction beta-2 protein; ION channel, alpha helical membrane channel, two double layered lipid spanning, cellular adhesion, cell junction; 3.50A {Homo sapiens} PDB: 3iz1_A 3iz2_A
Probab=6.08 E-value=7.2e+02 Score=20.27 Aligned_cols=20 Identities=10% Similarity=0.017 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhhhHHHHHH
Q psy15727 149 RTFLIIVIMFYIPVFPSMYF 168 (195)
Q Consensus 149 ~~~l~~~l~~yipg~~~ly~ 168 (195)
.|.+.++++.-+...+.+|.
T Consensus 76 fW~lQii~Vs~Psllf~~y~ 95 (226)
T 2zw3_A 76 LWALQLIFVSTPALLVAMHV 95 (226)
T ss_dssp HHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 46667766666666666665
No 7
>3im4_C Dual specificity A kinase-anchoring protein 2; four-helix bundle, acetylation, CAMP, CAMP-binding, disulfide bond, nucleotide-binding; 2.29A {Homo sapiens} PDB: 3tmh_D
Probab=5.34 E-value=2.3e+02 Score=17.66 Aligned_cols=9 Identities=33% Similarity=0.829 Sum_probs=6.7
Q ss_pred HHHhhhhhh
Q psy15727 73 LAWSTHEIT 81 (195)
Q Consensus 73 ~aWsi~Evi 81 (195)
+||-++|+|
T Consensus 17 MAWqIA~MI 25 (45)
T 3im4_C 17 LAWKIAKMI 25 (45)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 578887766
No 8
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=5.07 E-value=1.8e+02 Score=24.81 Aligned_cols=29 Identities=3% Similarity=-0.069 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhhcccccCCcchhHHHHHhhhh
Q psy15727 18 EVKTADTDLVYSLCSIVRSNPCSVLFLIVCRLL 50 (195)
Q Consensus 18 ~Q~~A~lEv~H~~~GlvrS~~~tt~~QV~sR~~ 50 (195)
-|...+-+....++ ..+..-+..+..|.-
T Consensus 39 RQL~dLs~~A~dIF----~eL~~e~~~~~~R~~ 67 (279)
T 3p8c_D 39 RQLSSLSKYAEDIF----GELFNEAHSFSFRVN 67 (279)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 34444444444443 223344444454443
No 9
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=5.02 E-value=6e+02 Score=21.51 Aligned_cols=53 Identities=13% Similarity=0.028 Sum_probs=23.6
Q ss_pred hhhhhhccCcccccCCCCCCccch------------hHHHH-HHHHHHHhhhHHHHHHHHHHHHHh
Q psy15727 124 SQQYFSQYPKWYLDLPEPWDSVFS------------YRTFL-IIVIMFYIPVFPSMYFHLLSKRKR 176 (195)
Q Consensus 124 aLp~~~~~~~~s~~mPn~~n~~f~------------~~~~l-~~~l~~yipg~~~ly~hM~~QRkk 176 (195)
+++-....+.--..+|..|++.|. ++... .+.+++.+..+..+..-++|-||+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~fqd~aSp~a~~i~~lh~~~~~i~~~I~v~V~~l~~~~~~r~r~~ 92 (298)
T 3hb3_B 27 ALAQDVLGDLPVIGKPVNGGMNFQPASSPLAHDQQWLDHFVLYIITAVTIFVCLLLLICIVRFNRR 92 (298)
T ss_dssp ---CCSSTTCCEEECCCTTCCSCSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSBTT
T ss_pred HHHHHhhccccccCCCChhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444444333222456666655443 33333 233344445555566666655554
No 10
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=4.19 E-value=3.7e+02 Score=15.02 Aligned_cols=11 Identities=36% Similarity=0.555 Sum_probs=6.5
Q ss_pred HHHHHHhhhcc
Q psy15727 170 LLSKRKRALKR 180 (195)
Q Consensus 170 M~~QRkk~l~~ 180 (195)
|+++||..+-.
T Consensus 9 ~Lq~Rk~~mi~ 19 (28)
T 3h8k_B 9 MLVQRKDELLQ 19 (28)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56677666543
Done!