Query psy15727
Match_columns 195
No_of_seqs 116 out of 400
Neff 5.6
Searched_HMMs 13730
Date Fri Aug 16 19:53:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15727.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15727hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74h1 f.23.27.1 (H:3-29) Pet 15.4 41 0.003 17.3 1.7 15 67-81 7-21 (27)
2 d1k1va_ a.37.1.1 (A:) Mafg {Mo 14.3 32 0.0023 19.8 1.2 12 170-181 28-39 (41)
3 d3dtub2 f.17.2.1 (B:30-129) Ba 9.5 1.7E+02 0.013 18.6 4.1 19 159-177 40-58 (100)
4 d1s99a_ d.58.48.2 (A:) Putativ 8.5 74 0.0054 23.9 1.9 31 105-135 109-139 (189)
5 d2a1ia1 c.52.1.20 (A:99-227) D 7.6 9.6 0.0007 27.4 -3.6 23 69-92 96-118 (129)
6 d2db7a1 a.273.1.1 (A:3-57) Hai 5.4 89 0.0065 18.8 0.7 15 70-84 14-28 (55)
7 d1z9ha1 a.45.1.1 (A:213-373) M 4.9 4.4E+02 0.032 18.4 4.6 17 161-179 69-85 (161)
8 d1rqja_ a.128.1.1 (A:) Farnesy 4.3 2E+02 0.015 21.7 2.4 16 16-31 65-80 (299)
9 d1a32a_ a.16.1.2 (A:) Ribosoma 4.3 1.3E+02 0.0093 19.3 0.9 18 167-184 54-71 (85)
10 d1kuqa_ a.16.1.2 (A:) Ribosoma 4.1 1.6E+02 0.012 18.8 1.4 18 167-184 53-70 (84)
No 1
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=15.36 E-value=41 Score=17.30 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=10.7
Q ss_pred hhHHHHHHHhhhhhh
Q psy15727 67 GLSLLILAWSTHEIT 81 (195)
Q Consensus 67 ~~~~l~~aWsi~Evi 81 (195)
...+.++.||++-++
T Consensus 7 v~llvvftwsiamvv 21 (27)
T d2e74h1 7 VALLVVFTWSIAMVV 21 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHhhheeeeEE
Confidence 445678899987654
No 2
>d1k1va_ a.37.1.1 (A:) Mafg {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.25 E-value=32 Score=19.80 Aligned_cols=12 Identities=42% Similarity=0.612 Sum_probs=8.9
Q ss_pred HHHHHHhhhccc
Q psy15727 170 LLSKRKRALKRL 181 (195)
Q Consensus 170 M~~QRkk~l~~~ 181 (195)
=+||||+-|+++
T Consensus 28 ~lKqrRRTLKNR 39 (41)
T d1k1va_ 28 QLKQRRRTLKNR 39 (41)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHhhhcC
Confidence 368888888764
No 3
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=9.54 E-value=1.7e+02 Score=18.61 Aligned_cols=19 Identities=11% Similarity=0.062 Sum_probs=10.9
Q ss_pred HhhhHHHHHHHHHHHHHhh
Q psy15727 159 YIPVFPSMYFHLLSKRKRA 177 (195)
Q Consensus 159 yipg~~~ly~hM~~QRkk~ 177 (195)
.+-....+..=+.|.|+|.
T Consensus 40 ~~~V~~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 40 TIFVTLLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHHHHhhhhhccC
Confidence 3344555666667777553
No 4
>d1s99a_ d.58.48.2 (A:) Putative thiamin/HMP-binding protein YkoF {Bacillus subtilis [TaxId: 1423]}
Probab=8.53 E-value=74 Score=23.85 Aligned_cols=31 Identities=10% Similarity=0.141 Sum_probs=26.3
Q ss_pred cceeecccchhHHHHHHHhhhhhhhccCccc
Q psy15727 105 AFIILYPLGTAGELLCFYSSQQYFSQYPKWY 135 (195)
Q Consensus 105 ~FivLYPlGv~~E~~~i~~aLp~~~~~~~~s 135 (195)
+=+-|||+|..=-|--||..+.+.++.+.|.
T Consensus 109 ~qfsLYpmg~~d~m~~Iy~~id~~k~~G~~~ 139 (189)
T d1s99a_ 109 CQFALYPMNEPDYMGLIMEAVDIAKAQGTFV 139 (189)
T ss_dssp EEEEEEETTCTTHHHHHHHHHHHHHHTTCEE
T ss_pred eeEEEEecCCccHHHHHHHHHHHHHHcCCCc
Confidence 3467999999988999999999999987664
No 5
>d2a1ia1 c.52.1.20 (A:99-227) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.55 E-value=9.6 Score=27.40 Aligned_cols=23 Identities=39% Similarity=0.665 Sum_probs=17.1
Q ss_pred HHHHHHHhhhhhhhhhHHHHHhcC
Q psy15727 69 SLLILAWSTHEITRYMFYCLHVMD 92 (195)
Q Consensus 69 ~~l~~aWsi~EviRY~yY~~~l~~ 92 (195)
+++++|||.-|.-||.= +++...
T Consensus 96 ~TLilaws~eEaa~YlE-~~k~~e 118 (129)
T d2a1ia1 96 CTLILAWSPEEAGRYLE-TYKAYE 118 (129)
T ss_dssp CEEEEESSHHHHHHHHH-HHHTCC
T ss_pred CEEEEEcCHHHHHHHHH-HHHHhc
Confidence 56788999999999953 445443
No 6
>d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with YRPW motif protein 1; HESR-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.37 E-value=89 Score=18.83 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=11.2
Q ss_pred HHHHHHhhhhhhhhh
Q psy15727 70 LLILAWSTHEITRYM 84 (195)
Q Consensus 70 ~l~~aWsi~EviRY~ 84 (195)
.+-+.=|..||-||.
T Consensus 14 a~GF~ECa~EV~RyL 28 (55)
T d2db7a1 14 SLGFRECLAEVARYL 28 (55)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHh
Confidence 345667899999983
No 7
>d1z9ha1 a.45.1.1 (A:213-373) Microsomal prostaglandin E synthase-2 {Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]}
Probab=4.91 E-value=4.4e+02 Score=18.40 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHHhhhc
Q psy15727 161 PVFPSMYFHLLSKRKRALK 179 (195)
Q Consensus 161 pg~~~ly~hM~~QRkk~l~ 179 (195)
.|++.|| ++++|.|+-+
T Consensus 69 ~Ga~~M~--~I~krlkkk~ 85 (161)
T d1z9ha1 69 MGAAAMY--LISKRLKSRH 85 (161)
T ss_dssp HHHHHHH--HHHHHHHHHT
T ss_pred cCHHHHH--HHHHHHhhcc
Confidence 3777775 4666655433
No 8
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=4.34 E-value=2e+02 Score=21.74 Aligned_cols=16 Identities=6% Similarity=0.212 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhhc
Q psy15727 16 EFEVKTADTDLVYSLC 31 (195)
Q Consensus 16 ~~~Q~~A~lEv~H~~~ 31 (195)
...+.++.+|++|++.
T Consensus 65 ~~~~~A~aiEllH~as 80 (299)
T d1rqja_ 65 TLDAPAAAVECIHAYS 80 (299)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4567889999999763
No 9
>d1a32a_ a.16.1.2 (A:) Ribosomal protein S15 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=4.27 E-value=1.3e+02 Score=19.29 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhhcccccc
Q psy15727 167 YFHLLSKRKRALKRLKIN 184 (195)
Q Consensus 167 y~hM~~QRkk~l~~~~~~ 184 (195)
...|+.||||.|.-.+++
T Consensus 54 L~~lv~~RrklL~YLrk~ 71 (85)
T d1a32a_ 54 LLKMVGKRRRLLAYLRNK 71 (85)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 456789999999876665
No 10
>d1kuqa_ a.16.1.2 (A:) Ribosomal protein S15 {Thermus thermophilus [TaxId: 274]}
Probab=4.13 E-value=1.6e+02 Score=18.76 Aligned_cols=18 Identities=22% Similarity=0.501 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhhcccccc
Q psy15727 167 YFHLLSKRKRALKRLKIN 184 (195)
Q Consensus 167 y~hM~~QRkk~l~~~~~~ 184 (195)
...|+.||||.|.-.+++
T Consensus 53 L~~lv~kRkklL~YLrk~ 70 (84)
T d1kuqa_ 53 LLMMVGQRRRLLRYLQRE 70 (84)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 456889999999876655
Done!