RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15727
(195 letters)
>gnl|CDD|202993 pfam04387, PTPLA, Protein tyrosine phosphatase-like protein, PTPLA.
This family includes the mammalian protein tyrosine
phosphatase-like protein, PTPLA. A significant variation
of PTPLA from other protein tyrosine phosphatases is the
presence of proline instead of catalytic arginine at the
active site. It is thought that PTPLA proteins have a
role in the development, differentiation, and
maintenance of a number of tissue types.
Length = 161
Score = 133 bits (337), Expect = 4e-40
Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 3/158 (1%)
Query: 25 DLVYSLCSIVRSNPCSVLFLIVCRLLIVWGVLMSSIPALHNTGLSLLILAWSTHEITRYM 84
+++++ +VRS + + RL +VWG+L S + + L++AWS EI RY
Sbjct: 7 EILHAAFGLVRSPVLTTFLQVSSRLFVVWGILYSLPEVQASPAVPSLLIAWSITEIIRYS 66
Query: 85 FYCLHVMDCLPYFMIWLRYSAFIILYPLGTAGELLCFYSSQQYFSQYPKWYLDLPEPWDS 144
+Y L+++ +PY++ WLRY+ FI+LYPLG ELL Y S Y +Y L++P +
Sbjct: 67 YYALNLLGTVPYWLTWLRYTLFIVLYPLGVLSELLLIYQSLPYTKKYS---LEMPNALNF 123
Query: 145 VFSYRTFLIIVIMFYIPVFPSMYFHLLSKRKRALKRLK 182
FSY FLI V++ YIP FP +Y H+L +R++ L + K
Sbjct: 124 SFSYYYFLIFVLLLYIPGFPVLYSHMLKQRRKVLGKKK 161
>gnl|CDD|166479 PLN02838, PLN02838, 3-hydroxyacyl-CoA dehydratase subunit of
elongase.
Length = 221
Score = 99.1 bits (247), Expect = 5e-26
Identities = 55/160 (34%), Positives = 89/160 (55%), Gaps = 3/160 (1%)
Query: 25 DLVYSLCSIVRSNPCSVLFLIVCRLLIVWGVLMSSIPALHNTGL-SLLILAWSTHEITRY 83
++++ L +VRS + L I RL + WG+L S P + + L + L+++WS EI RY
Sbjct: 61 EILHGLVGLVRSPVSATLPQIGSRLFLTWGILWS-FPEVRSHILVTSLVISWSITEIIRY 119
Query: 84 MFYCL-HVMDCLPYFMIWLRYSAFIILYPLGTAGELLCFYSSQQYFSQYPKWYLDLPEPW 142
F+ + P +++WLRYS F++LYP G E+ Y + Y K+ L +P W
Sbjct: 120 SFFGMKEAFGFAPSWLLWLRYSTFLLLYPTGITSEVGLIYIALPYMKASEKYCLRMPNKW 179
Query: 143 DSVFSYRTFLIIVIMFYIPVFPSMYFHLLSKRKRALKRLK 182
+ F Y I+V+ Y+P P MY ++L +RK+AL + K
Sbjct: 180 NFSFDYFYASILVLAIYVPGSPHMYSYMLGQRKKALSKSK 219
>gnl|CDD|227525 COG5198, Ptpl, Protein tyrosine phosphatase-like protein (contains
Pro instead of catalytic Arg) [General function
prediction only].
Length = 209
Score = 77.6 bits (191), Expect = 7e-18
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 16/159 (10%)
Query: 25 DLVYSLCSIVRSNPCSVLFLIVCRLLIVWGVLMSSIPALHNTGLSLLILAWSTHEITRYM 84
+ S V S + + ++ RL IVWGV +++ + AWS EI RY
Sbjct: 58 EAANSSAGKVNSRYLTTVMQVISRLFIVWGVFYPYCGIINSWTYPSITTAWSITEIVRYA 117
Query: 85 FYCLHVMDCLPYFMIWLRYSAFIILYPLGTAGELLCFYSSQQYFSQYPKWYLDLPEPWDS 144
FY ++ +P + LRY+ F+ILYP+G E+ C +
Sbjct: 118 FYTFR-LNGIPNTLRVLRYNLFLILYPIGFVSEMYCLRALYNAA--------------GK 162
Query: 145 VFSY-RTFLIIVIMFYIPVFPSMYFHLLSKRKRALKRLK 182
+FS + L IV++ YIP F ++ H+L++RK++ K +
Sbjct: 163 IFSLLKVVLPIVMLLYIPGFIFLFSHMLAQRKKSRKVKR 201
>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated.
Length = 343
Score = 29.5 bits (67), Expect = 0.93
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 150 TFLIIVIMFYIPVFPSMYFHL---LSKRKRALKRL--KINQ 185
+ L++VIMF + VF F L +S + AL RL +I +
Sbjct: 24 STLLLVIMFLLTVFVVAQFFLSREISGKDSALDRLNSQIAE 64
>gnl|CDD|234794 PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta';
Provisional.
Length = 1156
Score = 29.7 bits (68), Expect = 1.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 173 KRKRALKRLKINQDTIKS 190
KRK+ALKRLK+ + KS
Sbjct: 203 KRKKALKRLKVVEAFRKS 220
>gnl|CDD|232855 TIGR00173, menD,
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
carboxylic-acid synthase. MenD was thought until
recently to act as SHCHC synthase, but has recently been
shown to act instead as SEPHCHC synthase. Conversion of
SEPHCHC into SHCHC and pyruvate may occur spontaneously
but is catalyzed efficiently, at least in some
organisms, by MenH (see TIGR03695). 2-oxoglutarate
decarboxylase/SHCHC synthase (menD) is a thiamine
pyrophosphate enzyme involved in menaquinone
biosynthesis [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 430
Score = 29.5 bits (67), Expect = 1.2
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 125 QQYFSQYPKWYLDLPEP 141
F Y +W +DLP P
Sbjct: 114 PGLFGSYVRWSVDLPLP 130
>gnl|CDD|204252 pfam09489, CbtB, Probable cobalt transporter subunit (CbtB).
This entry represents a family of proteins which have
been proposed to act as cobalt transporters acting in
concert with vitamin B12 biosynthesis systems. Evidence
for this assignment includes 1) prediction of a single
transmembrane segment and a C-terminal histidine-rich
motif likely to be a metal-binding site, 2) positional
gene linkage with known B12 biosynthesis genes, 3)
upstream proximity of B12 transcriptional regulatory
sites, 4) the absence of other known cobalt import
systems and 5) the obligate co-localisation with a
protein (CbtA) predicted to have five additional
transmembrane segments.
Length = 55
Score = 27.0 bits (60), Expect = 1.3
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 49 LLIVWGVLMSSIPALHN 65
+++ V S PALHN
Sbjct: 25 AGLIFFVGFSQAPALHN 41
>gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional.
Length = 1157
Score = 28.9 bits (65), Expect = 1.9
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 97 FMIWLRYSAFIILYPLGTAGELLCFYSSQQYFS 129
MIW Y + Y LG G +YS Q+Y S
Sbjct: 1005 NMIW-HYDKDLSGYSLGQGG----YYSPQEYLS 1032
>gnl|CDD|224087 COG1165, MenD,
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
synthase [Coenzyme metabolism].
Length = 566
Score = 28.8 bits (65), Expect = 1.9
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 125 QQYFSQYPKWYLDLPEPWDS 144
F Y + +DLP P D
Sbjct: 123 TGLFGSYVRASIDLPLPEDD 142
>gnl|CDD|236818 PRK11009, aphA, acid phosphatase/phosphotransferase; Provisional.
Length = 237
Score = 28.1 bits (63), Expect = 3.1
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 120 CFYSSQQYFSQYPKWYLDLPEPWDSV 145
F+ ++ FS + YL + W+ +
Sbjct: 80 GFWRGKKTFSPGSEDYLKNQKFWEKM 105
>gnl|CDD|237835 PRK14850, PRK14850, penicillin-binding protein 1b; Provisional.
Length = 764
Score = 28.3 bits (63), Expect = 3.5
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 107 IILYPLGTAGELLCFYSSQQYFSQYPKW 134
I ++ + GEL C + QY P W
Sbjct: 705 INMFYINNLGELFCKKGNNQYNRMLPIW 732
>gnl|CDD|130074 TIGR01001, metA, homoserine O-succinyltransferase. The apparent
equivalog from Bacillus subtilis is broken into two
tandem reading frames [Amino acid biosynthesis,
Aspartate family].
Length = 300
Score = 27.5 bits (61), Expect = 4.6
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 72 ILAWSTHEITRYMFYCLHVMDCLPYF 97
I+ WS H +T MF C L YF
Sbjct: 127 IMEWSKHNVTSTMFICWAAQAGLKYF 152
>gnl|CDD|163693 cd08062, MPN_RPN7_8, Mpr1p, Pad1p N-terminal (MPN) domains without
catalytic isopeptidase activity, found in 19S
proteasomal subunits Rpn7 and Rpn8. This family
includes lid subunits of the 26 S proteasome regulatory
particles, Rpn7 (PSMD7; proteasome 26S non-ATPase
subunit 7; p44), and Rpn8 (PSMD8; proteasome 26S
non-ATPase subunit 8; p40; Mov34). Rpn7 is known to be
critical for the integrity of the 26 S proteasome
complex by establishing a correct lid structure. It is
necessary for the incorporation/anchoring of Rpn3 and
Rpn12 to the lid and essential for viability and normal
mitosis. Rpn7 and Rpn8 are ATP-independent components of
the 19S regulator subunit, and contain the MPN
structural motif on its N-terminal region. However,
while they show a typical MPN metalloprotease fold, they
lack the canonical JAMM motif, and therefore do not show
catalytic isopeptidase activity. It is suggested that
Rpn7 function is primarily structural.
Length = 280
Score = 27.2 bits (61), Expect = 5.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 13 FVAEFEVKTADTDLVYSLCSIVRS 36
V F VKT D LV L S++RS
Sbjct: 238 LVKAFAVKTNDQMLVIYLSSLIRS 261
>gnl|CDD|239653 cd03681, MM_CoA_mutase_MeaA, Coenzyme B12-dependent-methylmalonyl
coenzyme A (CoA) mutase (MCM) family, MeaA-like
subfamily; contains various methylmalonyl coenzyme A
(CoA) mutase (MCM)-like proteins similar to the
Streptomyces cinnamonensis MeaA, Methylobacterium
extorquens MeaA and Streptomyces collinus B12-dependent
mutase. Members of this subfamily contain an N-terminal
MCM domain and a C-terminal coenzyme B12 binding domain.
S. cinnamonensis MeaA is a putative B12-dependent mutase
which provides methylmalonyl-CoA precursors for the
biosynthesis of the monensin polyketide via an unknown
pathway. S. collinus B12-dependent mutase may be
involved in a pathway for acetate assimilation.
Length = 407
Score = 27.2 bits (60), Expect = 7.3
Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 130 QYPKW--YLDLPEPWDSVFSYR 149
Q P W L LP PWD +S R
Sbjct: 290 QLPAWNEALGLPRPWDQQWSLR 311
>gnl|CDD|233119 TIGR00763, lon, ATP-dependent protease La. This protein is induced
by heat shock and other stresses in E. coli, B.
subtilis, and other species. The yeast member,
designated PIM1, is located in the mitochondrial matrix,
required for mitochondrial function, and also induced by
heat shock [Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 775
Score = 26.9 bits (60), Expect = 8.0
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 160 IPVFPSMYFHLLSKRKRALKRLK 182
P+FP M + R++++K +K
Sbjct: 8 RPLFPGMIKPIDVGREKSIKLIK 30
>gnl|CDD|180760 PRK06934, PRK06934, flavodoxin; Provisional.
Length = 221
Score = 26.8 bits (59), Expect = 8.1
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 126 QYFSQYPKWYLDLPEPWDSVFSYRTFLIIVIMFYIPVFPSMYFHLLSKRKRALKRLKINQ 185
Q F YP W+ +P S F F + IP F + S R +KRL+ N
Sbjct: 132 QIFIGYPIWWYKMPMVMYSFFEQHDFSGKTL---IP-FTTHGGSRFSDSLREIKRLQPNA 187
Query: 186 DTIK 189
+
Sbjct: 188 QLVT 191
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.331 0.142 0.459
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,931,685
Number of extensions: 929658
Number of successful extensions: 1303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1292
Number of HSP's successfully gapped: 72
Length of query: 195
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 103
Effective length of database: 6,857,034
Effective search space: 706274502
Effective search space used: 706274502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (25.3 bits)