RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15727
         (195 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 33.7 bits (76), Expect = 0.036
 Identities = 18/142 (12%), Positives = 36/142 (25%), Gaps = 47/142 (33%)

Query: 28  YSLCSIVRSN---PCSVLFLIVCRLLIVWG-----VLMSSIPALHNTGLSLLILAWSTHE 79
           +   S+   +   P  +L        ++W       +M  +  LH    SL+        
Sbjct: 375 FDRLSVFPPSAHIPTILL-------SLIWFDVIKSDVMVVVNKLHK--YSLVEKQPKEST 425

Query: 80  ITRYMFYC-----------LH--------VMDCLPYFMIWL----RYSAFIILYPLGTAG 116
           I+    Y            LH        +        +      +Y    I + L    
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485

Query: 117 ELLCFYSSQQYFSQYPKWYLDL 138
                    +  + +   +LD 
Sbjct: 486 H-------PERMTLFRMVFLDF 500


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.1 bits (64), Expect = 0.56
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 8/25 (32%)

Query: 175 KRALKRLKINQDTIK-----SAEGL 194
           K+ALK+L   Q ++K     SA  L
Sbjct: 19  KQALKKL---QASLKLYADDSAPAL 40


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 27.3 bits (60), Expect = 4.1
 Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 8/42 (19%)

Query: 9    RNVPFVAEFEV-KTADTDLV----YSLCSIVRSNPCS--VLF 43
                  A+ +V   AD        +S+  IV +NP +  + F
Sbjct: 1636 YKTSKAAQ-DVWNRADNHFKDTYGFSILDIVINNPVNLTIHF 1676


>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D-
           structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB:
           1i6v_D* 2gho_D
          Length = 1265

 Score = 26.9 bits (60), Expect = 4.9
 Identities = 5/11 (45%), Positives = 9/11 (81%)

Query: 173 KRKRALKRLKI 183
           +R +A KRL++
Sbjct: 228 RRAKARKRLEV 238


>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20,
           substrate-assisted catalysis, alpha/beta barrel,
           isofagomin inhibitor complex; HET: IFG; 1.75A
           {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB:
           1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
          Length = 512

 Score = 27.0 bits (60), Expect = 5.3
 Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 12/69 (17%)

Query: 104 SAFIILYPLGTAGELLCFYSSQQYFS--QYPKWYLDLPEPWDSVFSYRTFLIIVIMFYIP 161
           +A +  Y      EL C   +   ++  +     L + +     +    F+  VI     
Sbjct: 258 NAALASYA-----ELNCDGVAPPLYTGTKVGFSSLCVDKD--VTY---DFVDDVIGELAA 307

Query: 162 VFPSMYFHL 170
           + P  Y H+
Sbjct: 308 LTPGRYLHI 316


>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO;
           NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A*
           1kul_A 1kum_A
          Length = 108

 Score = 25.6 bits (56), Expect = 5.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 123 SSQQYFSQYPKWYLDLPEPWDSVFSYR 149
           S+ +Y S  P WY+ +  P    F Y+
Sbjct: 44  SADKYTSSDPLWYVTVTLPAGESFEYK 70


>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
           streptolydigin, antibiotic, transcription regulation;
           HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
           PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
           2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
           3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
          Length = 1524

 Score = 26.7 bits (59), Expect = 6.4
 Identities = 5/11 (45%), Positives = 9/11 (81%)

Query: 173 KRKRALKRLKI 183
           +R +A KRL++
Sbjct: 488 RRAKARKRLEV 498


>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase,
           nucleotidyltransferase, transcription, transferase;
           11.20A {Escherichia coli} PDB: 3iyd_D*
          Length = 1407

 Score = 26.5 bits (59), Expect = 7.8
 Identities = 7/19 (36%), Positives = 14/19 (73%)

Query: 172 SKRKRALKRLKINQDTIKS 190
           +KRK+  KR+K+ +  ++S
Sbjct: 212 TKRKKLTKRIKLLEAFVQS 230


>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607,
           structural genomics,protein structure initiative PSI;
           NMR {Homo sapiens}
          Length = 128

 Score = 25.2 bits (55), Expect = 9.9
 Identities = 7/29 (24%), Positives = 13/29 (44%)

Query: 82  RYMFYCLHVMDCLPYFMIWLRYSAFIILY 110
            +M + + V+       +  RYS F  L+
Sbjct: 31  SHMVFRVEVLCSGRRHTVPRRYSEFHALH 59


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.331    0.142    0.459 

Gapped
Lambda     K      H
   0.267   0.0749    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,903,634
Number of extensions: 156869
Number of successful extensions: 318
Number of sequences better than 10.0: 1
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 16
Length of query: 195
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 106
Effective length of database: 4,216,824
Effective search space: 446983344
Effective search space used: 446983344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (24.9 bits)