RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15727
         (195 letters)



>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase
           fragment {Cow (Bos taurus) [TaxId: 9913]}
          Length = 193

 Score = 27.6 bits (61), Expect = 0.76
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 142 WDSVFSYRTFLIIVIMFYIPVFPSMYFHLLSKRKRALKRLKINQDTIKSAEG 193
            D+      F   ++  +I  F   +   +S+ KRA++RL+   +  K    
Sbjct: 36  GDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLS 87


>d1kula_ b.3.1.1 (A:) Glucoamylase, granular starch-binding domain
           {Aspergillus niger [TaxId: 5061]}
          Length = 108

 Score = 24.6 bits (53), Expect = 5.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 123 SSQQYFSQYPKWYLDLPEPWDSVFSYRTFLI 153
           S+ +Y S  P WY+ +  P    F Y+   I
Sbjct: 44  SADKYTSSDPLWYVTVTLPAGESFEYKFIRI 74


>d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase,
           C-terminal domain {Bacillus stearothermophilus,
           maltogenic alpha-amylase [TaxId: 1422]}
          Length = 110

 Score = 24.2 bits (52), Expect = 7.6
 Identities = 4/31 (12%), Positives = 8/31 (25%)

Query: 119 LCFYSSQQYFSQYPKWYLDLPEPWDSVFSYR 149
           +           YP W+     P      ++
Sbjct: 44  VNNAQGPLLAPNYPDWFYVFSVPAGKTIQFK 74


>d1zt2b1 a.262.1.1 (B:3-209) DNA primase large subunit PriB,
           N-terminal domain {Sulfolobus solfataricus [TaxId:
           2287]}
          Length = 207

 Score = 24.5 bits (53), Expect = 8.1
 Identities = 6/48 (12%), Positives = 15/48 (31%), Gaps = 2/48 (4%)

Query: 143 DSVFSYRTFLIIVIMFYIPVFPSMYFHLLSKRKRALKRLKINQDTIKS 190
           + V  + T L+ + +         Y    ++ K+    L    +    
Sbjct: 60  EPVLVFYTTLLSLAILNDVKLIRRY--AYAEAKQFRSLLHTENEENLL 105


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.142    0.459 

Gapped
Lambda     K      H
   0.267   0.0602    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 724,621
Number of extensions: 32356
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 6
Length of query: 195
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 114
Effective length of database: 1,295,466
Effective search space: 147683124
Effective search space used: 147683124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.3 bits)