BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15728
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 48/81 (59%), Gaps = 10/81 (12%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L R GQ D+++ L+ N ++N S ++GWTPLHLA+YFGH +VE LL
Sbjct: 18 LLEAARAGQDDEVRILM----ANGADVNASD------HVGWTPLHLAAYFGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAA 132
G D+NA + G TPLH AA
Sbjct: 68 KNGADVNADDSLGVTPLHLAA 88
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 10/77 (12%)
Query: 59 GQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDIN 118
G L+ ++ LL +N ++N + +LG TPLHLA+ GH VVE LL G D+N
Sbjct: 58 GHLEIVEVLL----KNGADVN------ADDSLGVTPLHLAADRGHLEVVEVLLKNGADVN 107
Query: 119 AVNDAGDTPLHKAAFVG 135
A + G TPLH AA +G
Sbjct: 108 ANDHNGFTPLHLAANIG 124
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 76 VEINLSQKGESKSNL--GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPL 128
VE+ L + +N G+TPLHLA+ GH +VE LL G D+NA + G T
Sbjct: 96 VEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 32.7 bits (73), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 88 SNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
S+LG L A+ G V L+ G D+NA + G TPLH AA+ G
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFG 58
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 10/84 (11%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L R G+ D+++ L+ N ++N + +GWTPLHLA+Y+GH +VE LL
Sbjct: 18 LLEAARAGRDDEVRILM----ANGADVN------AADVVGWTPLHLAAYWGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
G D+NA + G TPLH AA G
Sbjct: 68 KNGADVNAYDTLGSTPLHLAAHFG 91
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 10/74 (13%)
Query: 59 GQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDIN 118
G L+ ++ LL +N ++N + LG TPLHLA++FGH +VE LL G D+N
Sbjct: 58 GHLEIVEVLL----KNGADVN------AYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN 107
Query: 119 AVNDAGDTPLHKAA 132
A +D G TPLH AA
Sbjct: 108 AKDDNGITPLHLAA 121
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 10/70 (14%)
Query: 59 GQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDIN 118
G L+ ++ LL +N ++N +K + G TPLHLA+ GH +VE LL G D+N
Sbjct: 91 GHLEIVEVLL----KNGADVN------AKDDNGITPLHLAANRGHLEIVEVLLKYGADVN 140
Query: 119 AVNDAGDTPL 128
A + G T
Sbjct: 141 AQDKFGKTAF 150
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 10/81 (12%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L R GQ D+++ L+ N ++N ++ GWTPLHLA++FGH +VE LL
Sbjct: 18 LLEAARAGQDDEVRILM----ANGADVN------ARDFTGWTPLHLAAHFGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAA 132
G D+NA + G TPLH AA
Sbjct: 68 KNGADVNAKDSLGVTPLHLAA 88
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 10/74 (13%)
Query: 59 GQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDIN 118
G L+ ++ LL +N ++N +K +LG TPLHLA+ GH +VE LL G D+N
Sbjct: 58 GHLEIVEVLL----KNGADVN------AKDSLGVTPLHLAARRGHLEIVEVLLKNGADVN 107
Query: 119 AVNDAGDTPLHKAA 132
A + G TPLH AA
Sbjct: 108 ASDSHGFTPLHLAA 121
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 14/88 (15%)
Query: 41 NQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASY 100
+ L V +H R G L+ ++ LL +N ++N S G+TPLHLA+
Sbjct: 77 DSLGVTPLH----LAARRGHLEIVEVLL----KNGADVNASDSH------GFTPLHLAAK 122
Query: 101 FGHKSVVEFLLDQGVDINAVNDAGDTPL 128
GH +VE LL G D+NA + G T
Sbjct: 123 RGHLEIVEVLLKNGADVNAQDKFGKTAF 150
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 88 SNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
S+LG L A+ G V L+ G D+NA + G TPLH AA G
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFG 58
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L R GQ D+++ L+ N ++N + G TPLHLA+ +GH +VE LL
Sbjct: 18 LLEAARAGQDDEVRILM----ANGADVNATDAS------GLTPLHLAATYGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
G D+NA++ G TPLH AA +G
Sbjct: 68 KHGADVNAIDIMGSTPLHLAALIG 91
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 12/78 (15%)
Query: 59 GQLDKIKQLLDHCKE-NNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDI 117
G L+ ++ LL H + N ++I +G TPLHLA+ GH +VE LL G D+
Sbjct: 58 GHLEIVEVLLKHGADVNAIDI-----------MGSTPLHLAALIGHLEIVEVLLKHGADV 106
Query: 118 NAVNDAGDTPLHKAAFVG 135
NAV+ GDTPLH AA +G
Sbjct: 107 NAVDTWGDTPLHLAAIMG 124
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 59 GQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDIN 118
G L+ ++ LL H + N + G TPLHLA+ GH +VE LL G D+N
Sbjct: 91 GHLEIVEVLLKHGADVN----------AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 119 AVNDAGDTP 127
A + G T
Sbjct: 141 AQDKFGKTA 149
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L R GQ D+++ L+ N ++N + G TPLHLA+ +GH +VE LL
Sbjct: 18 LLEAARAGQDDEVRILM----ANGADVNATDAS------GLTPLHLAATYGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
G D+NA++ G TPLH AA +G
Sbjct: 68 KHGADVNAIDIXGSTPLHLAALIG 91
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 45/78 (57%), Gaps = 12/78 (15%)
Query: 59 GQLDKIKQLLDHCKE-NNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDI 117
G L+ ++ LL H + N ++I G TPLHLA+ GH +VE LL G D+
Sbjct: 58 GHLEIVEVLLKHGADVNAIDIX-----------GSTPLHLAALIGHLEIVEVLLKHGADV 106
Query: 118 NAVNDAGDTPLHKAAFVG 135
NAV+ GDTPLH AA +G
Sbjct: 107 NAVDTWGDTPLHLAAIMG 124
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 59 GQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDIN 118
G L+ ++ LL H + N + G TPLHLA+ GH +VE LL G D+N
Sbjct: 91 GHLEIVEVLLKHGADVN----------AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 119 AVNDAGDTP 127
A + G T
Sbjct: 141 AQDKFGKTA 149
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 10/84 (11%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L R GQ D+++ L+ N ++N +K G TPL+LA+ GH +VE LL
Sbjct: 18 LLEAARAGQDDEVRILM----ANGADVN------AKDEYGLTPLYLATAHGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
G D+NAV+ G TPLH AAF+G
Sbjct: 68 KNGADVNAVDAIGFTPLHLAAFIG 91
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 90 LGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPL 128
+G+TPLHLA++ GH + E LL G D+NA + G T
Sbjct: 79 IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAF 117
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 10/77 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
NG L+ I+ LL + ++N S K GWTPLHLA+Y GH +VE LL G
Sbjct: 55 VNNGHLEIIEVLLKYA----ADVNASDKS------GWTPLHLAAYRGHLEIVEVLLKYGA 104
Query: 116 DINAVNDAGDTPLHKAA 132
D+NA++ G TPLH AA
Sbjct: 105 DVNAMDYQGYTPLHLAA 121
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L R GQ D+++ L+ N ++N + G TPLHL GH ++E LL
Sbjct: 18 LLEAARAGQDDEVRILM----ANGADVN------ANDWFGITPLHLVVNNGHLEIIEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
D+NA + +G TPLH AA+ G
Sbjct: 68 KYAADVNASDKSGWTPLHLAAYRG 91
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPL 128
G+TPLHLA+ GH +VE LL G D+NA + G T
Sbjct: 113 GYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAF 150
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 47/81 (58%), Gaps = 10/81 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
NGQL+ ++ LL +N ++N S G TPLHLA+Y GH +VE LL G
Sbjct: 47 AANGQLEIVEVLL----KNGADVNASDSA------GITPLHLAAYDGHLEIVEVLLKHGA 96
Query: 116 DINAVNDAGDTPLHKAAFVGR 136
D+NA + AG TPLH AA G+
Sbjct: 97 DVNAYDRAGWTPLHLAALSGQ 117
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L GQ D+++ L+ N ++N + + G TPLHLA+ G +VE LL
Sbjct: 10 LLEAAAAGQDDEVRILM----ANGADVN------ATDDNGLTPLHLAAANGQLEIVEVLL 59
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
G D+NA + AG TPLH AA+ G
Sbjct: 60 KNGADVNASDSAGITPLHLAAYDG 83
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 52/124 (41%), Gaps = 31/124 (25%)
Query: 32 TPNSLSAELNQLSVKEIHELFLYN------------------CRNGQLDKIKQLLDHCKE 73
TP L+A QL EI E+ L N +G L+ ++ LL H +
Sbjct: 41 TPLHLAAANGQL---EIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGAD 97
Query: 74 NNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAF 133
N + GWTPLHLA+ G +VE LL G D+NA + G T +
Sbjct: 98 VN----------AYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISIN 147
Query: 134 VGRE 137
G+E
Sbjct: 148 QGQE 151
Score = 33.1 bits (74), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 98 ASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
A+ G V L+ G D+NA +D G TPLH AA G+
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQ 51
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 48/84 (57%), Gaps = 10/84 (11%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L R G+ D+++ L+ N ++N E S GWTPLHLA++ GH +VE LL
Sbjct: 18 LLEAARAGRDDEVRILM----ANGADVN----AEDAS--GWTPLHLAAFNGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
G D+NAV+ AG TPL AA G
Sbjct: 68 KNGADVNAVDHAGMTPLRLAALFG 91
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 58 NGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDI 117
NG L+ ++ LL +N ++N + + G TPL LA+ FGH +VE LL G D+
Sbjct: 57 NGHLEIVEVLL----KNGADVN------AVDHAGMTPLRLAALFGHLEIVEVLLKNGADV 106
Query: 118 NAVNDAGDTPLHKAAFVG 135
NA + G TPLH AA G
Sbjct: 107 NANDMEGHTPLHLAAMFG 124
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 76 VEINLSQKGESKSN--LGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPL 128
VE+ L + +N G TPLHLA+ FGH +VE LL G D+NA + G T
Sbjct: 96 VEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAF 150
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L R GQ D+++ L+ N ++N ++ + G TPLHLA+ GH +VE LL
Sbjct: 18 LLEAARAGQDDEVRILM----ANGADVN------AEDDSGKTPLHLAAIKGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
G D+NA + GDTPLH AA G
Sbjct: 68 KHGADVNAADKMGDTPLHLAALYG 91
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 10/77 (12%)
Query: 59 GQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDIN 118
G L+ ++ LL H ++N + K +G TPLHLA+ +GH +VE LL G D+N
Sbjct: 58 GHLEIVEVLLKH----GADVNAADK------MGDTPLHLAALYGHLEIVEVLLKNGADVN 107
Query: 119 AVNDAGDTPLHKAAFVG 135
A + G TPLH AA G
Sbjct: 108 ATDTYGFTPLHLAADAG 124
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 10/70 (14%)
Query: 59 GQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDIN 118
G L+ ++ LL +N ++N + G+TPLHLA+ GH +VE LL G D+N
Sbjct: 91 GHLEIVEVLL----KNGADVN------ATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN 140
Query: 119 AVNDAGDTPL 128
A + G T
Sbjct: 141 AQDKFGKTAF 150
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L R GQ D+++ L+ N ++N + N G TPLHLA+Y GH +VE LL
Sbjct: 18 LLEAARAGQDDEVRILM----ANGADVN------AADNTGTTPLHLAAYSGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
G D++A + G TPLH AA+ G
Sbjct: 68 KHGADVDASDVFGYTPLHLAAYWG 91
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 10/77 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+G L+ ++ LL H + ++ G+TPLHLA+Y+GH +VE LL G
Sbjct: 55 AYSGHLEIVEVLLKHGADV----------DASDVFGYTPLHLAAYWGHLEIVEVLLKNGA 104
Query: 116 DINAVNDAGDTPLHKAA 132
D+NA++ G TPLH AA
Sbjct: 105 DVNAMDSDGMTPLHLAA 121
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPL 128
G TPLHLA+ +G+ +VE LL G D+NA + G T
Sbjct: 113 GMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAF 150
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L R GQ D+++ L+ N ++N + N G+TPLHLA+ GH +VE LL
Sbjct: 18 LLEAARAGQDDEVRILM----ANGADVN------ATDNDGYTPLHLAASNGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
G D+NA + G TPLH AA G
Sbjct: 68 KNGADVNASDLTGITPLHLAAATG 91
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
NG L+ ++ LL +N ++N S G TPLHLA+ GH +VE LL G
Sbjct: 55 ASNGHLEIVEVLL----KNGADVNASDL------TGITPLHLAAATGHLEIVEVLLKHGA 104
Query: 116 DINAVNDAGDTPLHKAAFVG 135
D+NA ++ G TPLH AA G
Sbjct: 105 DVNAYDNDGHTPLHLAAKYG 124
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 38 AELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHL 97
A++N + I L L G L+ ++ LL H + N + N G TPLHL
Sbjct: 71 ADVNASDLTGITPLHLA-AATGHLEIVEVLLKHGADVN----------AYDNDGHTPLHL 119
Query: 98 ASYFGHKSVVEFLLDQGVDINAVNDAGDTPL 128
A+ +GH +VE LL G D+NA + G T
Sbjct: 120 AAKYGHLEIVEVLLKHGADVNAQDKFGKTAF 150
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 54 YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ 113
+ CR G+ ++ L+ IN+ +G+ TPLHLA+ GH+ +V+ LL
Sbjct: 45 WACREGRSAVVEMLI----MRGARINVMNRGDD------TPLHLAASHGHRDIVQKLLQY 94
Query: 114 GVDINAVNDAGDTPLHKAAFVGRE 137
DINAVN+ G+ PLH A F G++
Sbjct: 95 KADINAVNEHGNVPLHYACFWGQD 118
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 47 EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSV 106
E + CR G ++ LD N E +L+Q + G++PLH A G +V
Sbjct: 4 EFMDDIFTQCREGNAVAVRLWLD-----NTENDLNQGDDH----GFSPLHWACREGRSAV 54
Query: 107 VEFLLDQGVDINAVNDAGDTPLHKAA 132
VE L+ +G IN +N DTPLH AA
Sbjct: 55 VEMLIMRGARINVMNRGDDTPLHLAA 80
Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 93 TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV 138
PLH A ++G V E L+ G ++ N G+ P+ KA RE+
Sbjct: 107 VPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLREL 152
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L R GQ D+++ L+ N ++N K +G TPLHLA+ H +VE LL
Sbjct: 18 LLEAARAGQDDEVRILM----ANGADVNAEDK------VGLTPLHLAAMNDHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
G D+NA++ G+TPLH A G
Sbjct: 68 KNGADVNAIDAIGETPLHLVAMYG 91
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 90 LGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPL 128
+G TPLHL + +GH +VE LL G D+NA + G T
Sbjct: 79 IGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAF 117
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 54 YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ 113
+ CR G+ ++ L+ IN+ +G+ TPLHLA+ GH+ +V+ LL
Sbjct: 40 WACREGRSAVVEMLI----MRGARINVMNRGDD------TPLHLAASHGHRDIVQKLLQY 89
Query: 114 GVDINAVNDAGDTPLHKAAFVGRE 137
DINAVN+ G+ PLH A F G++
Sbjct: 90 KADINAVNEHGNVPLHYACFWGQD 113
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
CR G ++ LD N E +L+Q + G++PLH A G +VVE L+ +G
Sbjct: 8 CREGNAVAVRLWLD-----NTENDLNQGDDH----GFSPLHWACREGRSAVVEMLIMRGA 58
Query: 116 DINAVNDAGDTPLHKAA 132
IN +N DTPLH AA
Sbjct: 59 RINVMNRGDDTPLHLAA 75
Score = 34.3 bits (77), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 93 TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV 138
PLH A ++G V E L+ G ++ N G+ P+ KA RE+
Sbjct: 102 VPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLREL 147
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L R GQ D+++ L+ N ++N + + G TPLHLA+ GH +VE LL
Sbjct: 18 LLEATRAGQDDEVRILM----ANGADVN------AMDDAGVTPLHLAAKRGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
G D+NA + G TPLH AA VG
Sbjct: 68 KHGADVNASDSWGRTPLHLAATVG 91
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 38 AELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHL 97
A++N + + L L + G L+ ++ LL H + N + + G TPLHL
Sbjct: 38 ADVNAMDDAGVTPLHLA-AKRGHLEIVEVLLKHGADVN----------ASDSWGRTPLHL 86
Query: 98 ASYFGHKSVVEFLLDQGVDINAVNDAGDTPL 128
A+ GH +VE LL+ G D+NA + G T
Sbjct: 87 AATVGHLEIVEVLLEYGADVNAQDKFGKTAF 117
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 23/114 (20%)
Query: 45 VKEIHELFLYNCRNGQLDKIKQLLDHCKENN---------------------VEINLSQK 83
+ E+ + + NG D++K LL++ + N V++ LSQ
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQG 60
Query: 84 GE--SKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
+ +K + G TPLHLA+ GHK VV+ LL QG D NA + G TPLH AA G
Sbjct: 61 ADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENG 114
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 60/120 (50%), Gaps = 11/120 (9%)
Query: 26 SSSEEETPNSLSAELNQLSVKEIHELFLYNCR--NGQLDKIKQLLDHCKENN----VEIN 79
S S+ +TP L+AE KE+ +L L N + K L EN V++
Sbjct: 33 SDSDGKTPLHLAAENGH---KEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 89
Query: 80 LSQKGE--SKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
LSQ + +K + G TPLHLA+ GHK VV+ LL QG D N + G TPL A G E
Sbjct: 90 LSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNE 149
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L R GQ D+++ L+ N ++N +K G+TPLHLA+ GH +VE LL
Sbjct: 6 LLEAARAGQDDEVRILM----ANGADVN------AKDKDGYTPLHLAAREGHLEIVEVLL 55
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
G D+NA + G TPLH AA G
Sbjct: 56 KAGADVNAKDKDGYTPLHLAAREG 79
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R G L+ ++ LL + N +K G+TPLHLA+ GH +VE LL G
Sbjct: 43 AREGHLEIVEVLLKAGADVN----------AKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 116 DINAVNDAGDTPLHKAAFVG 135
D+NA + G TPLH AA G
Sbjct: 93 DVNAKDKDGYTPLHLAAREG 112
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R G L+ ++ LL + N +K G+TPLHLA+ GH +VE LL G
Sbjct: 76 AREGHLEIVEVLLKAGADVN----------AKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
D+NA + G TP A G E
Sbjct: 126 DVNAQDKFGKTPFDLAIREGHE 147
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 10/81 (12%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L R GQ D+++ L+ N ++N ++ G TPLHLA+ GH +VE LL
Sbjct: 18 LLEAARAGQDDEVRILM----ANGADVN------AEDTYGDTPLHLAARVGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAA 132
G D+NA++ +G TPLH AA
Sbjct: 68 KNGADVNALDFSGSTPLHLAA 88
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 29/45 (64%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
G TPLHLA+ GH +VE LL G D+NA + G TPLH AA G
Sbjct: 80 GSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTG 124
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 31/116 (26%)
Query: 31 ETPNSLSAELNQLSVKEIHELFLYN------------------CRNGQLDKIKQLLDHCK 72
+TP L+A + L EI E+ L N + G L+ ++ LL +
Sbjct: 48 DTPLHLAARVGHL---EIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGA 104
Query: 73 ENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPL 128
+ N + +G TPLHLA+ GH +VE LL G D+NA + G T
Sbjct: 105 DVNAD----------DTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 88 SNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
S+LG L A+ G V L+ G D+NA + GDTPLH AA VG
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVG 58
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L R GQ D+++ L+ N ++N +K G+TPLHLA+ GH +VE LL
Sbjct: 18 LLEAARAGQDDEVRILM----ANGADVN------AKDKDGYTPLHLAAREGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
G D+NA + G TPLH AA G
Sbjct: 68 KAGADVNAKDKDGYTPLHLAAREG 91
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R G L+ ++ LL + N +K G+TPLHLA+ GH +VE LL G
Sbjct: 55 AREGHLEIVEVLLKAGADVN----------AKDKDGYTPLHLAAREGHLEIVEVLLKAGA 104
Query: 116 DINAVNDAGDTPLHKAAFVG 135
D+NA + G TPLH AA G
Sbjct: 105 DVNAKDKDGYTPLHLAAREG 124
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R G L+ ++ LL + N +K G+TPLHLA+ GH +VE LL G
Sbjct: 88 AREGHLEIVEVLLKAGADVN----------AKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
Query: 116 DINAVNDAGDTPL 128
D+NA + G T
Sbjct: 138 DVNAQDKFGKTAF 150
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L R GQ D+++ L+ N ++N + N G TPLHLA+ GH +VE LL
Sbjct: 18 LLEAARAGQDDEVRILI----ANGADVN------AVDNTGLTPLHLAAVSGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
G D++A + G TPLH AA G
Sbjct: 68 KHGADVDAADVYGFTPLHLAAMTG 91
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 29/42 (69%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
G+TPLHLA+ GH +VE LL G D+NA + G TPLH AA
Sbjct: 80 GFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAA 121
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPL 128
G TPLHLA+ GH +VE LL G D+NA + G T
Sbjct: 113 GSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAF 150
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L R GQ D+++ L+ N ++N +K G+TPLHLA+ GH +VE LL
Sbjct: 6 LLEAARAGQDDEVRILM----ANGADVN------AKDKDGYTPLHLAAREGHLEIVEVLL 55
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
G D+NA + G TPLH AA G
Sbjct: 56 KAGADVNAKDKDGYTPLHLAAREG 79
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R G L+ ++ LL + N +K G+TPLHLA+ GH +VE LL G
Sbjct: 43 AREGHLEIVEVLLKAGADVN----------AKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 116 DINAVNDAGDTPLHKAAFVG 135
D+NA + G TPLH AA G
Sbjct: 93 DVNAKDKDGYTPLHLAAREG 112
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R G L+ ++ LL + N +K G+TPLHLA+ GH +VE LL G
Sbjct: 76 AREGHLEIVEVLLKAGADVN----------AKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
D+NA + G TP A G E
Sbjct: 126 DVNAQDKFGKTPFDLAIDNGNE 147
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L R GQ D+++ L+ + + N + + G TPLH+A+ GH +VE LL
Sbjct: 6 LLEAARAGQDDEVRILMANGADAN----------AYDHYGRTPLHMAAAVGHLEIVEVLL 55
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
G D+NAV+ G TPLH AA +G
Sbjct: 56 RNGADVNAVDTNGTTPLHLAASLG 79
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 30/45 (66%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
G TPLHLA+ GH +VE LL G D+NA + G TPL+ AA+ G
Sbjct: 68 GTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWG 112
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 59 GQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDIN 118
G L+ ++ LL + + N +K G TPL+LA+Y+GH +VE LL G D+N
Sbjct: 79 GHLEIVEVLLKYGADVN----------AKDATGITPLYLAAYWGHLEIVEVLLKHGADVN 128
Query: 119 AVNDAGDTPLHKAAFVGRE 137
A + G T + +G E
Sbjct: 129 AQDKFGKTAFDISIDIGNE 147
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L R GQ D+++ L+ N ++N + + G TPLHLA+ GH +VE LL
Sbjct: 18 LLEATRAGQDDEVRILM----ANGADVN------AMDDAGVTPLHLAAKRGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
G D+NA + G TPLH AA VG
Sbjct: 68 KHGADVNASDIWGRTPLHLAATVG 91
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 38 AELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHL 97
A++N + + L L + G L+ ++ LL H + N + G TPLHL
Sbjct: 38 ADVNAMDDAGVTPLHLA-AKRGHLEIVEVLLKHGADVN----------ASDIWGRTPLHL 86
Query: 98 ASYFGHKSVVEFLLDQGVDINAVNDAGDTPL 128
A+ GH +VE LL+ G D+NA + G T
Sbjct: 87 AATVGHLEIVEVLLEYGADVNAQDKFGKTAF 117
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
RNG L+ +K LL E ++N K G TPLHLA+ GH VV+ LL+ G
Sbjct: 10 ARNGHLEVVKLLL----EAGADVNAKDKN------GRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 116 DINAVNDAGDTPLHKAAFVG 135
D+NA + G TPLH AA G
Sbjct: 60 DVNAKDKNGRTPLHLAARNG 79
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
RNG L+ +K LL E ++N K G TPLHLA+ GH VV+ LL+ G
Sbjct: 43 ARNGHLEVVKLLL----EAGADVNAKDKN------GRTPLHLAARNGHLEVVKLLLEAGA 92
Query: 116 DINAVNDAGDTPLHKAAFVG 135
D+NA + G TPLH AA G
Sbjct: 93 DVNAKDKNGRTPLHLAARNG 112
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
G TPLHLA+ GH VV+ LL+ G D+NA + G TPLH AA G
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 46
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG 114
RNG L+ +K LL E ++N K G TPLHLA+ GH VV+ LL+ G
Sbjct: 76 ARNGHLEVVKLLL----EAGADVNAKDKN------GRTPLHLAARNGHLEVVKLLLEAG 124
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L R GQ D+++ L+ N ++N + + G TPLHLA+ GH +VE LL
Sbjct: 18 LLEATRAGQDDEVRILM----ANGADVN------AMDDAGVTPLHLAAKRGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
G D+NA + G TPLH AA VG
Sbjct: 68 KHGADVNARDIWGRTPLHLAATVG 91
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 38 AELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHL 97
A++N + + L L + G L+ ++ LL H + N ++ G TPLHL
Sbjct: 38 ADVNAMDDAGVTPLHLA-AKRGHLEIVEVLLKHGADVN----------ARDIWGRTPLHL 86
Query: 98 ASYFGHKSVVEFLLDQGVDINAVNDAGDTPL 128
A+ GH +VE LL+ G D+NA + G T
Sbjct: 87 AATVGHLEIVEVLLEYGADVNAQDKFGKTAF 117
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
RNG L+ +K LL E ++N K G TPLHLA+ GH VV+ LL+ G
Sbjct: 10 ARNGHLEVVKLLL----EAGADVNAKDKN------GRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 116 DINAVNDAGDTPLHKAA 132
D+NA + G TPLH AA
Sbjct: 60 DVNAKDKNGRTPLHLAA 76
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 29/42 (69%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
G TPLHLA+ GH VV+ LL+ G D+NA + G TPLH AA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 43
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG 114
RNG L+ +K LL E ++N K G TPLHLA+ GH VV+ LL+ G
Sbjct: 43 ARNGHLEVVKLLL----EAGADVNAKDKN------GRTPLHLAARNGHLEVVKLLLEAG 91
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L R GQ D+++ L N ++N + G TPLHLA+ GH +VE LL
Sbjct: 18 LLEAARAGQDDEVRIL----TANGADVN------ANDYWGHTPLHLAAMLGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAF 133
G D+NA + G TPLH AA+
Sbjct: 68 KNGADVNATGNTGRTPLHLAAW 89
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 10/70 (14%)
Query: 59 GQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDIN 118
G L+ ++ LL +N ++N + N G TPLHLA++ H +VE LL G D+N
Sbjct: 58 GHLEIVEVLL----KNGADVN------ATGNTGRTPLHLAAWADHLEIVEVLLKHGADVN 107
Query: 119 AVNDAGDTPL 128
A + G T
Sbjct: 108 AQDKFGKTAF 117
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 98 ASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
A+ G V L G D+NA + G TPLH AA +G
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLG 58
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 10/81 (12%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L R GQ D+++ L+ N ++N + + G TPLHLA++ GH +VE LL
Sbjct: 18 LLEAARAGQDDEVRILM----ANGADVN------AHDDQGSTPLHLAAWIGHPEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAA 132
G D+NA + G TPLH AA
Sbjct: 68 KHGADVNARDTDGWTPLHLAA 88
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 29/42 (69%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
GWTPLHLA+ GH +VE LL G D+NA + G TPLH AA
Sbjct: 80 GWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAA 121
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
NG L+ ++ LL + + N ++ G TPLHLA+ GH +VE LL G
Sbjct: 88 ADNGHLEIVEVLLKYGADVN----------AQDAYGLTPLHLAADRGHLEIVEVLLKHGA 137
Query: 116 DINAVNDAGDTPL 128
D+NA + G T
Sbjct: 138 DVNAQDKFGKTAF 150
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 98 ASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
A+ G V L+ G D+NA +D G TPLH AA++G
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIG 58
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L R GQ D+++ L+ N ++N + G TPLHLA+ GH +VE LL
Sbjct: 18 LLEAARAGQDDEVRILM----ANGADVNALDED------GLTPLHLAAQLGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
G D+NA ++ G TPLH AA G
Sbjct: 68 KYGADVNAEDNFGITPLHLAAIRG 91
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 59 GQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDIN 118
G L+ ++ LL + + N E N G TPLHLA+ GH +VE LL G D+N
Sbjct: 58 GHLEIVEVLLKYGADVNAE----------DNFGITPLHLAAIRGHLEIVEVLLKHGADVN 107
Query: 119 AVNDAGDTPL 128
A + G T
Sbjct: 108 AQDKFGKTAF 117
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L R GQ D+++ L+ N ++N + + G TPLHLA+ + H +VE LL
Sbjct: 18 LLEAARAGQDDEVRILM----ANGADVNANDRK------GNTPLHLAADYDHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
G D+NA ++ G TPLH AA G
Sbjct: 68 KHGADVNAHDNDGSTPLHLAALFG 91
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 26/43 (60%)
Query: 86 SKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPL 128
+ N G TPLHLA+ FGH +VE LL G D+NA + G T
Sbjct: 75 AHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAF 117
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 10/81 (12%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L R GQ D+++ L+ N ++N + LG TPLHLA+ GH +VE LL
Sbjct: 18 LLEAARAGQDDEVRILM----ANGADVN------ATDWLGHTPLHLAAKTGHLEIVEVLL 67
Query: 112 DQGVDINAVNDAGDTPLHKAA 132
G D+NA ++ G TPLH AA
Sbjct: 68 KYGADVNAWDNYGATPLHLAA 88
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+ G L+ ++ LL + + N + N G TPLHLA+ GH +VE LL G
Sbjct: 55 AKTGHLEIVEVLLKYGADVN----------AWDNYGATPLHLAADNGHLEIVEVLLKHGA 104
Query: 116 DINAVNDAGDTPLHKAAFVG 135
D+NA + G TPLH AA+ G
Sbjct: 105 DVNAKDYEGFTPLHLAAYDG 124
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
NG L+ ++ LL H + N +K G+TPLHLA+Y GH +VE LL G
Sbjct: 88 ADNGHLEIVEVLLKHGADVN----------AKDYEGFTPLHLAAYDGHLEIVEVLLKYGA 137
Query: 116 DINAVNDAGDTPL 128
D+NA + G T
Sbjct: 138 DVNAQDKFGKTAF 150
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 98 ASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
A+ G V L+ G D+NA + G TPLH AA G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTG 58
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 14/102 (13%)
Query: 35 SLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTP 94
SL+ +Q S +H + C G + ++ LL + V +N K + GW+P
Sbjct: 32 SLATRTDQDSRTALH----WACSAGHTEIVEFLL----QLGVPVN------DKDDAGWSP 77
Query: 95 LHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
LH+A+ G +V+ LL +G +NAVN G TPLH AA R
Sbjct: 78 LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNR 119
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%)
Query: 93 TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
T LH A GH +VEFLL GV +N +DAG +PLH AA GR+
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRD 87
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
G TPLH A+ + LL+ G + +A + T +H+AA G
Sbjct: 107 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKG 151
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 18/41 (43%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
G TPLHLA + L+ QG I N TPL A
Sbjct: 173 GNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 213
Score = 25.4 bits (54), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 85 ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
++K + T +H A+ G+ ++ LL N + G+TPLH A
Sbjct: 134 DAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA 180
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 14/102 (13%)
Query: 35 SLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTP 94
SL+ +Q S +H + C G + ++ LL + V +N K + GW+P
Sbjct: 31 SLATRTDQDSRTALH----WACSAGHTEIVEFLL----QLGVPVN------DKDDAGWSP 76
Query: 95 LHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
LH+A+ G +V+ LL +G +NAVN G TPLH AA R
Sbjct: 77 LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNR 118
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%)
Query: 93 TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
T LH A GH +VEFLL GV +N +DAG +PLH AA GR+
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRD 86
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
G TPLH A+ + LL+ G + +A + T +H+AA G
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKG 150
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 18/41 (43%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
G TPLHLA + L+ QG I N TPL A
Sbjct: 172 GNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 212
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 85 ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
++K + T +H A+ G+ ++ LL N + G+TPLH A
Sbjct: 133 DAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA 179
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 23/114 (20%)
Query: 45 VKEIHELFLYNCRNGQLDKIKQLLD-----------------HCKENN----VEINLSQK 83
+ E+ + + NG D++K L++ H EN V++ +S+
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKG 60
Query: 84 GE--SKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
+ +K + G TPLH A+ GHK VV+ L+ +G D+NA + G TPLH AA G
Sbjct: 61 ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENG 114
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 86 SKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
+K + G TPLH A+ GHK VV+ L+ +G D+N + G TPL A G E
Sbjct: 98 AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNE 149
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 23/114 (20%)
Query: 45 VKEIHELFLYNCRNGQLDKIKQLLDH------------------CKENNVEIN--LSQKG 84
+ E+ + + NG D++K L+++ KE + EI L KG
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKG 60
Query: 85 E---SKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
+K + G TPLH A+ GHK +V+ L+ +G D+NA + G TPLH AA G
Sbjct: 61 ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEG 114
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 86 SKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
+K + G TPLH A+ GHK +V+ L+ +G D+N + G TPL A G E
Sbjct: 98 AKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNE 149
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 23/114 (20%)
Query: 45 VKEIHELFLYNCRNGQLDKIKQLLDHCKENN---------------------VEINLSQK 83
+ E+ + + NG D++K LL++ + N V++ LS+
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKG 60
Query: 84 GE--SKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
+ +K + G TPLH A+ GHK +V+ LL +G D NA + G TPLH AA G
Sbjct: 61 ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENG 114
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 54 YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ 113
Y NG + +K LL + N +K + G TPLH A+ GHK +V+ LL +
Sbjct: 76 YAAENGHKEIVKLLLSKGADPN----------AKDSDGRTPLHYAAENGHKEIVKLLLSK 125
Query: 114 GVDINAVNDAGDTPLHKAAFVGRE 137
G D N + G TPL A G E
Sbjct: 126 GADPNTSDSDGRTPLDLAREHGNE 149
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 14/102 (13%)
Query: 35 SLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTP 94
SL+ +Q S +H + C G + ++ LL + V +N K + GW+P
Sbjct: 31 SLATRTDQDSRTALH----WACSAGHTEIVEFLL----QLGVPVN------DKDDAGWSP 76
Query: 95 LHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
LH+A+ G +V+ LL +G +NAVN G TPLH AA R
Sbjct: 77 LHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNR 118
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%)
Query: 93 TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
T LH A GH +VEFLL GV +N +DAG +PLH AA GR+
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRD 86
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
G TPLH A+ + LL+ G + +A + T +H+AA G
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKG 150
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 19/41 (46%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
G TPLHLA +FL+ QG I N TPL A
Sbjct: 172 GNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 85 ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
++K + T +H A+ G+ +V LL N + G+TPLH A
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 14/102 (13%)
Query: 35 SLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTP 94
SL+ +Q S +H + C G + ++ LL + V +N K + GW+P
Sbjct: 31 SLATRTDQDSRTALH----WACSAGHTEIVEFLL----QLGVPVN------DKDDAGWSP 76
Query: 95 LHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
LH+A+ G +V+ LL +G +NAVN G TPLH AA R
Sbjct: 77 LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNR 118
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%)
Query: 93 TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
T LH A GH +VEFLL GV +N +DAG +PLH AA G +
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXD 86
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
G TPLH A+ + LL+ G + +A + T +H+AA G
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKG 150
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 19/41 (46%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
G TPLHLA +FL+ QG I N TPL A
Sbjct: 172 GNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 85 ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
++K + T +H A+ G+ +V LL N + G+TPLH A
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 23/101 (22%)
Query: 51 LFLYNCRNGQLDKIKQLLDH------------------CKENNVEIN--LSQKGES---K 87
+FL C +G +++ +LL+ C ++NV++ L + G +
Sbjct: 43 VFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP 102
Query: 88 SNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPL 128
N GW PLH A+ G+ + E+L+ QG + AVN GDTPL
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPL 143
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
GWTPLH A+++G + L++ D+ AVN G T A
Sbjct: 232 GWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA 272
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
G T LH+A+ G+ V++ L+ D+N + G TPLH AA G+E
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKE 245
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 70 HCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLH 129
H +V I ++ + +G+TPLH+AS++G+ +V+FLL D+NA G +PLH
Sbjct: 290 HVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLH 349
Query: 130 KAA 132
+AA
Sbjct: 350 QAA 352
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 59 GQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDIN 118
G + +K LL H + N +K+ LG++PLH A+ GH +V LL G N
Sbjct: 322 GNIKLVKFLLQHQADVN----------AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN 371
Query: 119 AVNDAGDTPLHKAAFVG 135
V+ G TPL A +G
Sbjct: 372 EVSSDGTTPLAIAKRLG 388
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 92 WTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
TPLH+AS+ GH +V+ LL +G N N +TPLH AA G
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAG 58
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R G + K LL +N ++N K + TPLH A+ GH ++V+ LL+
Sbjct: 55 ARAGHTEVAKYLL----QNKAKVNAKAKDDQ------TPLHCAARIGHTNMVKLLLENNA 104
Query: 116 DINAVNDAGDTPLHKAA 132
+ N AG TPLH AA
Sbjct: 105 NPNLATTAGHTPLHIAA 121
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
G TPLHL + GH V + L+ GV ++A G TPLH A+ G
Sbjct: 278 GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYG 322
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 79 NLSQKGESK--SNLGW-TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
NL Q+G S SN+ TPLH+A+ GH V ++LL +NA TPLH AA +G
Sbjct: 32 NLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIG 91
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R G + +K LL ENN NL+ + G TPLH+A+ GH V LL++
Sbjct: 88 ARIGHTNMVKLLL----ENNANPNLA------TTAGHTPLHIAAREGHVETVLALLEKEA 137
Query: 116 DINAVNDAGDTPLHKAAFVGR 136
+ G TPLH AA G+
Sbjct: 138 SQACMTKKGFTPLHVAAKYGK 158
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 71 CKENNVE--INLSQKGESKSNL---GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGD 125
+E +VE + L +K S++ + G+TPLH+A+ +G V E LL++ NA G
Sbjct: 121 AREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGL 180
Query: 126 TPLHKA 131
TPLH A
Sbjct: 181 TPLHVA 186
Score = 34.3 bits (77), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
G+TPLH+A+ V LL G NA + G TPLH AA
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAA 253
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
G TPLH+A + + +V+ LL +G ++ G TPLH AA
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAA 220
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 11/80 (13%)
Query: 53 LYNC-RNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L+N +NG +++K+LL + N ++S G TPLHLA+ GH +V+ LL
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVN----------ARSKDGNTPLHLAAKNGHAEIVKLLL 62
Query: 112 DQGVDINAVNDAGDTPLHKA 131
+G D+NA + G+TP H A
Sbjct: 63 AKGADVNARSKDGNTPEHLA 82
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 29/45 (64%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
G TPLH A+ GH V+ LL +G D+NA + G+TPLH AA G
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNG 53
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L R GQ D+++ L+ N ++N +K G+TPLHLA+ GH +VE LL
Sbjct: 6 LLEAARAGQDDEVRILM----ANGADVN------AKDKDGYTPLHLAAREGHLEIVEVLL 55
Query: 112 DQGVDINAVNDAGDTPL 128
G D+NA + G T
Sbjct: 56 KAGADVNAQDKFGKTAF 72
Score = 29.3 bits (64), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 98 ASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
A+ G V L+ G D+NA + G TPLH AA G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREG 46
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 59 GQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDIN 118
G + ++ LL + + NV K + GWTPLH A GH VVE LL +N
Sbjct: 21 GDIPSVEYLLQNGSDPNV----------KDHAGWTPLHEACNHGHLKVVELLLQHKALVN 70
Query: 119 AVNDAGDTPLHKAA 132
D+PLH AA
Sbjct: 71 TTGYQNDSPLHDAA 84
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
G T LH+AS G VE+LL G D N + AG TPLH+A
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEA 50
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 93 TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPL 128
+PLH A+ GH +V+ LL G NAVN G P+
Sbjct: 78 SPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
F++ +NG LD++K D+ + ++N + +G G PLH A+ G ++EFLL
Sbjct: 6 FMWALKNGDLDEVK---DYVAKGE-DVNRTLEG------GRKPLHYAADCGQLEILEFLL 55
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
+G DINA + TPL A + G
Sbjct: 56 LKGADINAPDKHHITPLLSAVYEG 79
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 93 TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPL 128
TPL A Y GH S V+ LL +G D G T L
Sbjct: 70 TPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
F++ +NG LD++K D+ + ++N + +G G PLH A+ G ++EFLL
Sbjct: 11 FMWALKNGDLDEVK---DYVAKGE-DVNRTLEG------GRKPLHYAADCGQLEILEFLL 60
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
+G DINA + TPL A + G
Sbjct: 61 LKGADINAPDKHHITPLLSAVYEG 84
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 93 TPLHLASYFGHKSVVEFLLDQGVD 116
TPL A Y GH S V+ LL +G D
Sbjct: 75 TPLLSAVYEGHVSCVKLLLSKGAD 98
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 54 YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ 113
+ R G L + QL+ + + ++ GE G + +HLA+ FGH S+V +L+ +
Sbjct: 82 WATRQGHLSMVVQLMKYGADPSL-----IDGE-----GCSCIHLAAQFGHTSIVAYLIAK 131
Query: 114 GVDINAVNDAGDTPLHKAAF 133
G D++ ++ G TPL AA+
Sbjct: 132 GQDVDMMDQNGMTPLMWAAY 151
Score = 32.7 bits (73), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 54 YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKS--------NLGWTPLHLASYFGHKS 105
Y+ R Q DK L H N I+L + SK +L TPLH A+ GH S
Sbjct: 33 YDVR--QPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLS 90
Query: 106 VVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
+V L+ G D + ++ G + +H AA G
Sbjct: 91 MVVQLMKYGADPSLIDGEGCSCIHLAAQFG 120
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%)
Query: 90 LGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
LG +PLHLA+ +GH S E LL GV +A TPLH AA G
Sbjct: 33 LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG 78
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 70 HCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLH 129
H V + ++++ + TPLH+A+ GH ++VE LL G D+NA + T LH
Sbjct: 46 HFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALH 105
Query: 130 KA 131
A
Sbjct: 106 WA 107
Score = 30.0 bits (66), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 17/119 (14%)
Query: 7 RIKFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQ 66
RI A G T D + T +P L+A+ S E+ L K+ +
Sbjct: 19 RILMANGAPFTTDWLGT--------SPLHLAAQYGHFSTTEV--LLRAGVSRDARTKVDR 68
Query: 67 LLDHCKE-----NNVEINLSQKGE--SKSNLGWTPLHLASYFGHKSVVEFLLDQGVDIN 118
H N VE+ L + +K L T LH A+ H+ VVE L+ G D++
Sbjct: 69 TPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH 127
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 93 TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
TPLH A+ + SVVE+LL G D++A + G PLH A G
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYG 88
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 28/120 (23%)
Query: 17 THDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNV 76
T V R + TP +A N++SV ++ LL H
Sbjct: 31 TVQSVNCRDIEGRQSTPLHFAAGYNRVSV------------------VEYLLQH----GA 68
Query: 77 EINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
+++ KG G PLH A +GH V E L+ G +N + TPLH+AA G+
Sbjct: 69 DVHAKDKG------GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 122
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 93 TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
TPLH A+ + SVVE+LL G D++A + G PLH A G
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYG 86
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 28/120 (23%)
Query: 17 THDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNV 76
T V R + TP +A N++SV ++ LL H
Sbjct: 29 TVQSVNCRDIEGRQSTPLHFAAGYNRVSV------------------VEYLLQH----GA 66
Query: 77 EINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
+++ KG G PLH A +GH V E L+ G +N + TPLH+AA G+
Sbjct: 67 DVHAKDKG------GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 120
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 93 TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
TPLH A+ + SVVE+LL G D++A + G PLH A G
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYG 90
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 28/120 (23%)
Query: 17 THDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNV 76
T V R + TP +A N++SV ++ LL H
Sbjct: 33 TVQSVNCRDIEGRQSTPLHFAAGYNRVSV------------------VEYLLQH----GA 70
Query: 77 EINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
+++ KG G PLH A +GH V E L+ G +N + TPLH+AA G+
Sbjct: 71 DVHAKDKG------GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 124
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 10/77 (12%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L R GQ D+++ L+ N ++ +K G TPLHLA+ GH VV+ LL
Sbjct: 10 LLEAARAGQDDEVRILM----ANGADV------AAKDKNGSTPLHLAARNGHLEVVKLLL 59
Query: 112 DQGVDINAVNDAGDTPL 128
+ G D+NA + G T
Sbjct: 60 EAGADVNAQDKFGKTAF 76
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 88 SNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
S+LG L A+ G V L+ G D+ A + G TPLH AA
Sbjct: 4 SDLGKKLLE-AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAA 47
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 21/87 (24%)
Query: 49 HELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVE 108
+E+ Y NGQ+D +N G GWTP+ A+ + H +V+
Sbjct: 90 YEVVQYLLSNGQMD---------------VNCQDDG------GWTPMIWATEYKHVDLVK 128
Query: 109 FLLDQGVDINAVNDAGDTPLHKAAFVG 135
LL +G DIN ++ + LH AAF G
Sbjct: 129 LLLSKGSDINIRDNEENICLHWAAFSG 155
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 95 LHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
LH A++ G + E LL D++AVN GD+PLH AA R
Sbjct: 148 LHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENR 189
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQG-VDINAVNDAGDTPL 128
G T LHLA+ GH VV++LL G +D+N +D G TP+
Sbjct: 77 GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM 115
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 93 TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
+PLH A+ GH + L+ G +I+ ++ TPL +AA
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAA 52
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAF 133
G +PLH+A+ V L + D+ N G+TPL A+
Sbjct: 177 GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASL 219
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 93 TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
TPL A+ H V++L+ G ++ + G T LH AA G
Sbjct: 46 TPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKG 88
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
C+ G +K LLD + K K G TPL A GH +V LL G
Sbjct: 127 CQQGHFQVVKCLLDS----------NAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGA 176
Query: 116 DINAVNDAGDTPLHKAAF 133
INA N+ G+T LH+A
Sbjct: 177 SINASNNKGNTALHEAVI 194
Score = 33.5 bits (75), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 93 TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPL 128
PLHLA GH VV+ LLD N + +G+TPL
Sbjct: 121 VPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPL 156
Score = 32.3 bits (72), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
G +PLH+A+ G ++ LL G + A N PLH A G
Sbjct: 86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQG 130
Score = 29.6 bits (65), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 49/134 (36%), Gaps = 23/134 (17%)
Query: 1 MTSKHGRIKFAP--------GGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHEL- 51
+ + HGR P G R DQ H + ++ + L+ + +L
Sbjct: 92 VAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLS 151
Query: 52 ----FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVV 107
+Y C G + + LL H IN S +N G T LH A H VV
Sbjct: 152 GNTPLIYACSGGHHELVALLLQH----GASINAS------NNKGNTALHEAVIEKHVFVV 201
Query: 108 EFLLDQGVDINAVN 121
E LL G + +N
Sbjct: 202 ELLLLHGASVQVLN 215
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 12/115 (10%)
Query: 21 VRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINL 80
+ +R ++ +E P S S + +V++ H L + +N +D ++QLL E +N
Sbjct: 1 MESRDHNNPQEGPTSSSGR--RAAVEDNH-LLIKAVQNEDVDLVQQLL----EGGANVNF 53
Query: 81 SQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
++ GWTPLH A + +VE LL G D G TP AA G
Sbjct: 54 QEE-----EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAG 103
Score = 29.3 bits (64), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
F+ G++ +K L N+ + E G T L A+ GH V++ LL
Sbjct: 129 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL 188
Query: 112 DQ-GVDINAVNDAGDTPL 128
D+ G D+NA ++ G L
Sbjct: 189 DEMGADVNACDNMGRNAL 206
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 104 KSVVEFLLDQGVDINAVNDAGDTPL 128
+++ LLD G D+N + G TPL
Sbjct: 219 EAITHLLLDHGADVNVRGERGKTPL 243
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 92 WTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
TPLH+A+ H V+E L G +NA++ G T LH+AA G
Sbjct: 248 MTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAG 291
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 86 SKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
+K G PLH A +GH V E LL G +NA++ TPLH+AA R
Sbjct: 86 AKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNR 136
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L R+G +K+ LL + +N KS TPLHLA+ + +V+ LL
Sbjct: 28 LLEAARSGNEEKLMALL-----TPLNVNCHASDGRKS----TPLHLAAGYNRVRIVQLLL 78
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
G D++A + G PLH A G
Sbjct: 79 QHGADVHAKDKGGLVPLHNACSYG 102
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 89 NLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV 138
+LG T LH A+ GH LL G D + ++ G T AA +G E
Sbjct: 278 SLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFT----AAQMGNEA 323
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 22/132 (16%)
Query: 1 MTSKHGRIKFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQ 60
M G++ PG RT+ R + SE + + + N L+ L L + G+
Sbjct: 2 MPEITGQVSLPPG-KRTN----LRKTGSER-IAHGMRVKFNPLA------LLLDSSLEGE 49
Query: 61 LDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAV 120
D +++++ + ++ ++ G T LH A GH +V+FL+ GV++NA
Sbjct: 50 FDLVQRIIYEVDDPSL----------PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA 99
Query: 121 NDAGDTPLHKAA 132
+ G TPLH AA
Sbjct: 100 DSDGWTPLHCAA 111
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVN 121
GWTPLH A+ + V +FL++ G + A+
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 68 LDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ-GVDINAVNDAGDT 126
L C +N V +N K S T L+ A + GHK +VE L Q +++N N GDT
Sbjct: 89 LRECLDNRVGVNGLDKAGS------TALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDT 142
Query: 127 PLHKAAFVG 135
LH AA+ G
Sbjct: 143 ALHAAAWKG 151
Score = 29.3 bits (64), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 80 LSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
++++ ES N PLH A+ G+ S + LD V +N ++ AG T L+ A G
Sbjct: 66 VAEQAESIDN----PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGG 117
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 19/121 (15%)
Query: 12 PGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHC 71
P G RT+ R + SE + + + N L + L L + G+ D +++++
Sbjct: 10 PPGKRTN----LRKTGSER-IAHGMRVKFNPLPLA----LLLDSSLEGEFDLVQRIIYEV 60
Query: 72 KENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
+ ++ ++ G T LH A GH +V+FL+ GV++NA + G TPLH A
Sbjct: 61 DDPSL----------PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCA 110
Query: 132 A 132
A
Sbjct: 111 A 111
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVN 121
GWTPLH A+ + V +FL++ G + A+
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ-G 114
R GQLD ++ LL+ + N+E N G PLHLA+ GH VVEFL+
Sbjct: 78 ARAGQLDTLQTLLEFQADVNIE----------DNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 115 VDINAVNDAGDTPLHKAAFVGR 136
++ N GDT A GR
Sbjct: 128 SNVGHRNHKGDTACDLARLYGR 149
Score = 29.6 bits (65), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 87 KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
K G+ +H A+ G ++ LL+ D+N ++ G+ PLH AA
Sbjct: 66 KDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L R GQ D+++ L+ N ++ +K G TPLHLA+ GH VV+ LL
Sbjct: 28 LLEAARAGQDDEVRILM----ANGADV------AAKDKNGSTPLHLAARNGHLEVVKLLL 77
Query: 112 DQGVDINAVNDAGDTPL 128
+ G D+ A + G T
Sbjct: 78 EAGADVXAQDKFGKTAF 94
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 88 SNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
S+LG L A+ G V L+ G D+ A + G TPLH AA
Sbjct: 22 SDLGKKLLE-AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAA 65
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 51 LFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFL 110
L + +N +D ++QLL E +N ++ GWTPLH A + +VE L
Sbjct: 8 LLIKAVQNEDVDLVQQLL----EGGANVNFQEE-----EGGWTPLHNAVQMSREDIVELL 58
Query: 111 LDQGVDINAVNDAGDTPLHKAAFVG 135
L G D G TP AA G
Sbjct: 59 LRHGADPVLRKKNGATPFLLAAIAG 83
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
G TP LA+ G +++ L +G D+N + G T +AA G+
Sbjct: 72 GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK 117
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQ-GVDINAVNDAGDTPL 128
G T L A+ GH V++ LLD+ G D+NA ++ G L
Sbjct: 148 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 186
Score = 26.2 bits (56), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 104 KSVVEFLLDQGVDINAVNDAGDTPL 128
+++ LLD G D+N + G TPL
Sbjct: 199 EAITHLLLDHGADVNVRGERGKTPL 223
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R G LD ++ LL EN ++N+ + N G PLHLA+ GH VVEFL+
Sbjct: 78 ARAGFLDTLQTLL----ENQADVNI------EDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 116 -DINAVNDAGDTPLHKAAFVGR 136
++ N GDT A GR
Sbjct: 128 SNVGHRNHKGDTACDLARLYGR 149
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 87 KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
K G+ +H A+ G ++ LL+ D+N ++ G+ PLH AA
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAA 111
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
G TPL + FG+ + FLL+ G ++N N G+TPL A+ GR
Sbjct: 101 GKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGR 146
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
G TPL +AS +G +V+ LL+ G DI+A + G T A GR+
Sbjct: 134 GETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQ 180
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFV 134
G TPL LA+ + +VE L+ DINA +++G T LH AA V
Sbjct: 118 GTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAV 161
Score = 33.1 bits (74), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 15/91 (16%)
Query: 51 LFLYNCRNGQLDKIKQLLDHCKENN-------VEINLSQKGESKSNL---GWTPLHLASY 100
L + R G LD + + ENN + L+Q E + + G T LHLA+
Sbjct: 6 LMIAAVRGGGLDTGEDI-----ENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAAR 60
Query: 101 FGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
F + LLD G D N+ ++ G TPLH A
Sbjct: 61 FARADAAKRLLDAGADANSQDNTGRTPLHAA 91
Score = 29.3 bits (64), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 86 SKSNLGWTPLHLASYFGHKSVVEFLL-DQGVDINAVNDAGDTPLHKAAFVGRE 137
S+ N G TPLH A V + LL ++ ++NA G TPL AA + E
Sbjct: 79 SQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIE 131
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 86 SKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
+ N G T LH A+ + V LL + +A +D +TPL AA G
Sbjct: 146 AADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREG 195
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ-G 114
R G LD ++ LL+ + N+E N G PLHLA+ GH VVEFL+
Sbjct: 78 ARAGFLDTLQTLLEFQADVNIE----------DNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 115 VDINAVNDAGDTPLHKAAFVGR 136
++ N GDT A GR
Sbjct: 128 SNVGHRNHKGDTACDLARLYGR 149
Score = 29.3 bits (64), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 87 KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
K G+ +H A+ G ++ LL+ D+N ++ G+ PLH AA
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R G LD ++ LL+ + N+E N G PLHLA+ GH VVEFL+
Sbjct: 78 ARAGFLDTLQTLLEFQADVNIE----------DNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 116 -DINAVNDAGDTPLHKAAFVGR 136
++ N GDT A GR
Sbjct: 128 SNVGHRNHKGDTACDLARLYGR 149
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 87 KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
K G +H A+ G ++ LL+ D+N ++ G+ PLH AA
Sbjct: 66 KDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ-G 114
R G LD ++ LL+ + N+E N G PLHLA+ GH VVEFL+
Sbjct: 78 ARAGFLDTLQTLLEFQADVNIE----------DNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 115 VDINAVNDAGDTPLHKAAFVGR 136
++ N GDT A GR
Sbjct: 128 SNVGHRNHKGDTACDLARLYGR 149
Score = 29.3 bits (64), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 87 KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
K G+ +H A+ G ++ LL+ D+N ++ G+ PLH AA
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R G LD +K L++H + NV G P+HLA GH +VV FL +
Sbjct: 82 ARTGFLDTLKVLVEHGADVNV----------PDGTGALPIHLAVQEGHTAVVSFLAAES- 130
Query: 116 DINAVNDAGDTPLHKA 131
D++ + G TPL A
Sbjct: 131 DLHRRDARGLTPLELA 146
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 76 VEINLSQKGES---KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
+ + L ++G S + G +P+H A+ G ++ L++ G D+N + G P+H A
Sbjct: 56 IALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLA 114
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 85 ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
++ + G T L + FG ++ LL QG N + +G +P+H AA G
Sbjct: 36 DALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG 85
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R G LD +K L++H + NV G P+HLA GH +VV FL +
Sbjct: 76 ARTGFLDTLKVLVEHGADVNV----------PDGTGALPIHLAVQEGHTAVVSFLAAES- 124
Query: 116 DINAVNDAGDTPLHKA 131
D++ + G TPL A
Sbjct: 125 DLHRRDARGLTPLELA 140
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 76 VEINLSQKGES---KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
+ + L ++G S + G +P+H A+ G ++ L++ G D+N + G P+H A
Sbjct: 50 IALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLA 108
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 85 ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
++ + G T L + FG ++ LL QG N + +G +P+H AA G
Sbjct: 30 DALNRFGKTALQVM-MFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG 79
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R G LD +K L++H + N + + G P+HLA GH SVV FL +
Sbjct: 84 ARTGFLDTLKVLVEHGADVN----------ALDSTGSLPIHLAIREGHSSVVSFLAPES- 132
Query: 116 DINAVNDAGDTPLHKA 131
D++ + +G TPL A
Sbjct: 133 DLHHRDASGLTPLELA 148
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 76 VEINLSQKGES---KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
V + L ++G S + G +P+H A+ G ++ L++ G D+NA++ G P+H A
Sbjct: 58 VALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLA 116
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 85 ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
++ + G T L + FG +V LL QG N + +G +P+H AA G
Sbjct: 38 DALNRFGKTALQVM-MFGSPAVALELLKQGASPNVQDASGTSPVHDAARTG 87
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R G LD +K L++H + N + + G P+HLA GH SVV FL +
Sbjct: 82 ARTGFLDTLKVLVEHGADVN----------ALDSTGSLPIHLAIREGHSSVVSFLAPES- 130
Query: 116 DINAVNDAGDTPLHKA 131
D++ + +G TPL A
Sbjct: 131 DLHHRDASGLTPLELA 146
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 76 VEINLSQKGES---KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
V + L ++G S + G +P+H A+ G ++ L++ G D+NA++ G P+H A
Sbjct: 56 VALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLA 114
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 85 ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
++ + G T L + FG +V LL QG N + +G +P+H AA G
Sbjct: 36 DALNRFGKTALQVM-MFGSPAVALELLKQGASPNVQDASGTSPVHDAARTG 85
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Query: 51 LFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFL 110
L L G+L+ ++Q + KE N + SQ E G T LH A + S+V+FL
Sbjct: 24 LLLDAALTGELEVVQQAV---KEMN---DPSQPNEE----GITALHNAICGANYSIVDFL 73
Query: 111 LDQGVDINAVNDAGDTPLHKAA 132
+ G ++N+ + G TPLH AA
Sbjct: 74 ITAGANVNSPDSHGWTPLHCAA 95
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 92 WTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
W+P+H A+ GH+ + L+ QG +N + +PLH+A G
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGG 47
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 21/43 (48%)
Query: 93 TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
+PLH A GH S V+ LL G +N V TPL A G
Sbjct: 38 SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSG 80
Score = 32.3 bits (72), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 88 SNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
S+LG TPL+LA ++ V+ LL+ G D+N D+PLH A E
Sbjct: 132 SHLG-TPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASE 179
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
C N Q +K+LL E+ ++N KG+ +PLH + + + L+D G
Sbjct: 142 CENQQRACVKKLL----ESGADVN-QGKGQD------SPLHAVARTASEELACLLMDFGA 190
Query: 116 DINAVNDAGDTPL 128
D A N G P+
Sbjct: 191 DTQAKNAEGKRPV 203
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 53 LYN-CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L+N C +G D + LL H E +L+ +P+H A+ GH V L+
Sbjct: 73 LFNACVSGSWDCVNLLLQHGASVQPESDLA-----------SPIHEAARRGHVECVNSLI 121
Query: 112 DQGVDINAVNDAGDTPLHKAA 132
G +I+ TPL+ A
Sbjct: 122 AYGGNIDHKISHLGTPLYLAC 142
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 87 KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
++NL TPLHLA + E LL G D + G+TPLH A
Sbjct: 41 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC 86
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDA-GDTPLHKAA 132
G T LHLAS G+ +VE L+ G D+NA G T LH A
Sbjct: 117 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV 159
Score = 29.3 bits (64), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTP 127
G T LHLA + +V LL G D+N V G +P
Sbjct: 151 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 187
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGV--DINAVNDAGDTPLHKAAFVGRE 137
GWTP H+A G+ VV+ L D+ + D+N + + G T LH A VG++
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA--VGKK 118
Score = 33.1 bits (74), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
F C G L+ +K L D L +N G T LHLA V +FL+
Sbjct: 76 FHIACSVGNLEVVKSLYDR--------PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 127
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
+ G + + PLH+AA VG
Sbjct: 128 ENGASVRIKDKFNQIPLHRAASVG 151
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGV--DINAVNDAGDTPLHKAAFVGRE 137
GWTP H+A G+ VV+ L D+ + D+N + + G T LH A VG++
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA--VGKK 118
Score = 33.1 bits (74), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
F C G L+ +K L D L +N G T LHLA V +FL+
Sbjct: 76 FHIACSVGNLEVVKSLYDR--------PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 127
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
+ G + + PLH+AA VG
Sbjct: 128 ENGASVRIKDKFNQIPLHRAASVG 151
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGV--DINAVNDAGDTPLHKAAFVGRE 137
GWTP H+A G+ VV+ L D+ + D+N + + G T LH A VG++
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA--VGKK 118
Score = 33.1 bits (74), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
F C G L+ +K L D L +N G T LHLA V +FL+
Sbjct: 76 FHIACSVGNLEVVKSLYDR--------PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 127
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
+ G + + PLH+AA VG
Sbjct: 128 ENGASVRIKDKFNQIPLHRAASVG 151
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 87 KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
++NL TPLHLA + E LL G D + G+TPLH A
Sbjct: 38 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC 83
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
C G L + L C ++ L + G T LHLAS G+ +VE L+ G
Sbjct: 83 CEQGCLASVGVLTQSCTTPHLHSILKATNYN----GHTCLHLASIHGYLGIVELLVSLGA 138
Query: 116 DINAVNDA-GDTPLHKAA 132
D+NA G T LH A
Sbjct: 139 DVNAQEPCNGRTALHLAV 156
Score = 28.9 bits (63), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTP 127
G T LHLA + +V LL G D+N V G +P
Sbjct: 148 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 184
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 92 WTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
W+P+H A+ GH+ + L+ QG +N + +PLH+A G
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGG 103
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 21/43 (48%)
Query: 93 TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
+PLH A GH S V+ LL G +N V TPL A G
Sbjct: 94 SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSG 136
Score = 30.0 bits (66), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 88 SNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
S+LG TPL+LA ++ V+ LL+ G D+N D+PLH E
Sbjct: 188 SHLG-TPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASE 235
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 19/114 (16%)
Query: 18 HDQVRTRHSSSEEETPNSLSAELNQLSVKEIH---ELFLYNCRNGQLDKIKQLLDHCKEN 74
H+ R H E NSL A + K H L+L C N Q +K+LL E+
Sbjct: 162 HEAARRGHV----ECVNSLIAYGGNIDHKISHLGTPLYLA-CENQQRACVKKLL----ES 212
Query: 75 NVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPL 128
++N KG+ +PLH + + L+D G D A N G P+
Sbjct: 213 GADVN-QGKGQD------SPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPV 259
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 12/95 (12%)
Query: 38 AELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHL 97
A++N ++ + H C +G D + LL H E +L+ +P+H
Sbjct: 116 AQVNGVTA-DWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-----------SPIHE 163
Query: 98 ASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
A+ GH V L+ G +I+ TPL+ A
Sbjct: 164 AARRGHVECVNSLIAYGGNIDHKISHLGTPLYLAC 198
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 13/69 (18%)
Query: 48 IHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVV 107
IH+L G+LD++K+ H ++ + NL K + + G+TPL AS FG V
Sbjct: 6 IHQL----AAQGELDQLKE---HLRKGD---NLVNKPDER---GFTPLIWASAFGEIETV 52
Query: 108 EFLLDQGVD 116
FLL+ G D
Sbjct: 53 RFLLEWGAD 61
Score = 32.3 bits (72), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 73 ENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
E +V+IN+ G TPL A H VE LL +G D+ D+G TP+ A
Sbjct: 90 ERDVDINIYDWN------GGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAV 143
Query: 133 FVG 135
+G
Sbjct: 144 ALG 146
Score = 32.3 bits (72), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
++ G+++ ++ LL+ + ++ L+++ ES L LAS G+ +V LL
Sbjct: 40 LIWASAFGEIETVRFLLEWGADPHI---LAKERESA-------LSLASTGGYTDIVGLLL 89
Query: 112 DQGVDINAVNDAGDTPLHKAA 132
++ VDIN + G TPL A
Sbjct: 90 ERDVDINIYDWNGGTPLLYAV 110
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 13/69 (18%)
Query: 48 IHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVV 107
IH+L G+LD++K+ H ++ + NL K + + G+TPL AS FG V
Sbjct: 6 IHQL----AAQGELDQLKE---HLRKGD---NLVNKPDER---GFTPLIWASAFGEIETV 52
Query: 108 EFLLDQGVD 116
FLL+ G D
Sbjct: 53 RFLLEWGAD 61
Score = 33.5 bits (75), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 73 ENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
E +V+IN+ G TPL A + H VE LL +G D+ D+G TP+ A
Sbjct: 90 ERDVDINIYDWN------GGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAV 143
Query: 133 FVG 135
+G
Sbjct: 144 ALG 146
Score = 32.3 bits (72), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
++ G+++ ++ LL+ + ++ L+++ ES L LAS G+ +V LL
Sbjct: 40 LIWASAFGEIETVRFLLEWGADPHI---LAKERESA-------LSLASTGGYTDIVGLLL 89
Query: 112 DQGVDINAVNDAGDTPLHKAA 132
++ VDIN + G TPL A
Sbjct: 90 ERDVDINIYDWNGGTPLLYAV 110
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
++ +GQ+ ++ LL +N + L KG + L LA G+ +V+ LL
Sbjct: 40 LMWAAAHGQIAVVEFLL----QNGADPQLLGKGRESA------LSLACSKGYTDIVKMLL 89
Query: 112 DQGVDINAVNDAGDTPLHKAA 132
D GVD+N + G TPL A
Sbjct: 90 DCGVDVNEYDWNGGTPLLYAV 110
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
C G D +K LLD C V++N E N G TPL A + H V+ LL+ G
Sbjct: 77 CSKGYTDIVKMLLD-C---GVDVN-----EYDWN-GGTPLLYAVHGNHVKCVKMLLESGA 126
Query: 116 DINAVNDAGDTPLHKAAFVG 135
D D+G + A +G
Sbjct: 127 DPTIETDSGYNSMDLAVALG 146
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVD 116
G+TPL A+ G +VVEFLL G D
Sbjct: 36 GFTPLMWAAAHGQIAVVEFLLQNGAD 61
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
++ +GQ+ ++ LL +N + L KG + L LA G+ +V+ LL
Sbjct: 38 LMWAAAHGQIAVVEFLL----QNGADPQLLGKGRESA------LSLACSKGYTDIVKMLL 87
Query: 112 DQGVDINAVNDAGDTPLHKAA 132
D GVD+N + G TPL A
Sbjct: 88 DCGVDVNEYDWNGGTPLLYAV 108
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
C G D +K LLD C V++N E N G TPL A + H V+ LL+ G
Sbjct: 75 CSKGYTDIVKMLLD-C---GVDVN-----EYDWN-GGTPLLYAVHGNHVKCVKMLLESGA 124
Query: 116 DINAVNDAGDTPLHKAAFVG 135
D D+G + A +G
Sbjct: 125 DPTIETDSGYNSMDLAVALG 144
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVD 116
G+TPL A+ G +VVEFLL G D
Sbjct: 34 GFTPLMWAAAHGQIAVVEFLLQNGAD 59
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
++ +GQ+ ++ LL +N + L KG + L LA G+ +V+ LL
Sbjct: 56 LMWAAAHGQIAVVEFLL----QNGADPQLLGKGRESA------LSLACSKGYTDIVKMLL 105
Query: 112 DQGVDINAVNDAGDTPLHKAA 132
D GVD+N + G TPL A
Sbjct: 106 DCGVDVNEYDWNGGTPLLYAV 126
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
C G D +K LLD C V++N E N G TPL A + H V+ LL+ G
Sbjct: 93 CSKGYTDIVKMLLD-C---GVDVN-----EYDWN-GGTPLLYAVHGNHVKCVKMLLESGA 142
Query: 116 DINAVNDAGDTPLHKAAFVG 135
D D+G + A +G
Sbjct: 143 DPTIETDSGYNSMDLAVALG 162
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVD 116
G+TPL A+ G +VVEFLL G D
Sbjct: 52 GFTPLMWAAAHGQIAVVEFLLQNGAD 77
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLH 129
G TPL LA+ + ++E L++ D+NAV+D G + LH
Sbjct: 89 GTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALH 127
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
G T LHLA+ + + LL+ D ++ G TPLH A
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAA 62
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL-DQG 114
R + D K+LL+ + ++ N+G TPLH A + V + LL ++
Sbjct: 30 ARYSRSDAAKRLLEASADAXIQ----------DNMGRTPLHAAVSADAQGVFQILLRNRA 79
Query: 115 VDINAVNDAGDTPLHKAAFVGRE 137
D++A G TPL AA + E
Sbjct: 80 TDLDARMHDGTTPLILAARLALE 102
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLH 129
G TPL LA+ + ++E L++ D+NAV+D G + LH
Sbjct: 124 GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 162
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 34.7 bits (78), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLH 129
G TPL LA+ + ++E L++ D+NAV+D G + LH
Sbjct: 15 GTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALH 53
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 34.7 bits (78), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 59/139 (42%), Gaps = 30/139 (21%)
Query: 21 VRTRHSSSEEETPNSLS------AELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKEN 74
+ T +S EE+ P +S A L+ + + R + D K+LL+ +
Sbjct: 25 LETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA 84
Query: 75 NVEINLSQKG------------------------ESKSNLGWTPLHLASYFGHKSVVEFL 110
N++ N+ + +++ + G TPL LA+ + ++E L
Sbjct: 85 NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 144
Query: 111 LDQGVDINAVNDAGDTPLH 129
++ D+NAV+D G + LH
Sbjct: 145 INSHADVNAVDDLGKSALH 163
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLH 129
G TPL LA+ + ++E L++ D+NAV+D G + LH
Sbjct: 124 GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 162
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
G T LHLA+ + + LL+ D N ++ G TPLH A
Sbjct: 57 GATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 11/77 (14%)
Query: 62 DKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL-DQGVDINAV 120
D K+LL+ + N++ N+G TPLH A + V + L+ ++ D++A
Sbjct: 71 DAAKRLLEASADANIQ----------DNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120
Query: 121 NDAGDTPLHKAAFVGRE 137
G TPL AA + E
Sbjct: 121 MHDGTTPLILAARLAVE 137
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLH 129
G TPL LA+ + ++E L++ D+NAV+D G + LH
Sbjct: 92 GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 130
Score = 33.5 bits (75), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
G T LHLA+ + + LL+ D N ++ G TPLH A
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
Score = 32.7 bits (73), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 11/83 (13%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL-DQG 114
R + D K+LL+ + N++ N+G TPLH A + V + L+ ++
Sbjct: 33 ARYSRSDAAKRLLEASADANIQ----------DNMGRTPLHAAVSADAQGVFQILIRNRA 82
Query: 115 VDINAVNDAGDTPLHKAAFVGRE 137
D++A G TPL AA + E
Sbjct: 83 TDLDARMHDGTTPLILAARLAVE 105
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 23/47 (48%)
Query: 85 ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
+ + G TPLHLA SV+E LL G D A G TPL A
Sbjct: 186 KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA 232
Score = 33.5 bits (75), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 87 KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFV 134
+++LG T LHLA+ G S VE L G + G T LH A V
Sbjct: 41 QNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRV 88
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 85 ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVND-AGDTPLHKA 131
E+++ G TPLH+A +V L D G D+N G TPLH A
Sbjct: 152 EAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLA 199
Score = 29.6 bits (65), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVD---INAVNDAGDTPLHKAAFVG 135
G T LHLA H+ ++FLL ++ ND G T LH AA +G
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG 56
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 23/47 (48%)
Query: 85 ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
+ + G TPLHLA SV+E LL G D A G TPL A
Sbjct: 186 KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA 232
Score = 33.5 bits (75), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 87 KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFV 134
+++LG T LHLA+ G S VE L G + G T LH A V
Sbjct: 41 QNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRV 88
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 85 ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVND-AGDTPLHKA 131
E+++ G TPLH+A +V L D G D+N G TPLH A
Sbjct: 152 EAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLA 199
Score = 29.6 bits (65), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVD---INAVNDAGDTPLHKAAFVG 135
G T LHLA H+ ++FLL ++ ND G T LH AA +G
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG 56
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 93 TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
TPL A+ EFLL G ++N + AG PLH A +G
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
G PLH A+ GH + L +G D+ A + G PL A
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
G TPL++A + + + L+D+G DIN N D+P A GR
Sbjct: 39 GNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGR 84
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 93 TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
TPL A+ EFLL G ++N + AG PLH A +G
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPL 128
G PLH A+ GH + L +G D+ A + G PL
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPL 305
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 93 TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
TPL A+ EFLL G ++N + AG PLH A +G
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
G PLH A+ GH + L +G D+ A + G PL A
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 33.1 bits (74), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 78 INLSQKG----ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
+NL Q+G + +NL TPLHLA SVV L+ G A++ G T H A
Sbjct: 29 VNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA 86
Score = 32.7 bits (73), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 64 IKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVN-D 122
++ LLD +++ E+++ G T LH+A + V+ LL++G DI+AV+
Sbjct: 95 LRALLDSAAPGTLDL------EARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIK 148
Query: 123 AGDTPL 128
+G +PL
Sbjct: 149 SGRSPL 154
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 38 AELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHL 97
A+++ + +K ++ N L ++ LL H N ++ G + LH
Sbjct: 140 ADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS----------GSSALHS 189
Query: 98 ASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
AS G +V L+ G D + N DTPL A
Sbjct: 190 ASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA 223
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
G +PL A S+V+ LL G ++NA +G + LH A+ G
Sbjct: 150 GRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRG 194
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLH 129
G PL A+ G + +V L++ G DI A + G+T LH
Sbjct: 121 GEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLH 159
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 83 KGESKSNLGWTPLHLASYFGHKSVVEFLLD---QGVDINAVNDAGDTPLH 129
KG G PL LA+ ++V+FLL Q DI+A + G+T LH
Sbjct: 140 KGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLH 189
Score = 29.3 bits (64), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 55 NCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNL-GWTPLHLASYFGHKSVVEFLLDQ 113
N NGQ D I LLD ++ + + S G T LH+A + ++V L++
Sbjct: 64 NLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNXTLVTLLVEN 123
Query: 114 GVDINA 119
G D+ A
Sbjct: 124 GADVQA 129
>pdb|1NFD|F Chain F, An Alpha-Beta T Cell Receptor (Tcr) Heterodimer In Complex
With An Anti-Tcr Fab Fragment Derived From A Mitogenic
Antibody
pdb|1NFD|H Chain H, An Alpha-Beta T Cell Receptor (Tcr) Heterodimer In Complex
With An Anti-Tcr Fab Fragment Derived From A Mitogenic
Antibody
Length = 222
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 6 GRIKFAPGGNRTH--DQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNC-RNGQLD 62
GRIK P T D VR R + S +++ NS+ ++N+L V + +Y C R G+ D
Sbjct: 49 GRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNRLRVDDTA---IYYCTRAGRFD 105
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGD 125
G TP+ LA+ G VV +L+ QG + AV DA D
Sbjct: 313 GKTPIXLAAQEGRIEVVXYLIQQGASVEAV-DATD 346
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 93 TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
TPL LA + +V +L G D N + + LH+AA
Sbjct: 168 TPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAA 207
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 53 LYNCRNGQLDKIKQLLDHC-KENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L N NG+ D I LLD + N+ ++ G T LH+A K VE L+
Sbjct: 52 LLNLSNGRNDTIPVLLDIAERTGNMREFINSPFRDIYYRGQTALHIAIERRCKHYVELLV 111
Query: 112 DQGVDINA 119
QG D++A
Sbjct: 112 AQGADVHA 119
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 62 DKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVN 121
D I+ +L + N+ SQ G+ T L LA G VV+ LL D+N +
Sbjct: 161 DDIETVLQLFRLGNINAKASQAGQ-------TALMLAVSHGRVDVVKALLACEADVNVQD 213
Query: 122 DAGDTPLHKAA 132
D G T L A
Sbjct: 214 DDGSTALMCAC 224
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
G T LH+A+ + VVE L++ G DI ++ G T L A
Sbjct: 110 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 29.6 bits (65), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
G T LH+A+ + VVE L++ G DI ++ G T L A
Sbjct: 111 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 29.3 bits (64), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 94 PLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
PLH A+ +V+ LL G+D + +D G+T L+ A
Sbjct: 65 PLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAV 103
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 29.3 bits (64), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
G T L++A+ G+ S+V+ LLD G D N +G P+ A
Sbjct: 283 GDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 85 ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
++K+ G T LH A+ + ++ LL + VN+AG+T L A
Sbjct: 220 DAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 266
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 85 ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
++K+ G T LH A+ + ++ LL + VN+AG+T L A
Sbjct: 201 DAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 53 LYNCRNGQLDKIKQLLDHC-KENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L N G+ D I LLD K N+ ++ G T LH+A K VE L+
Sbjct: 54 LLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLV 113
Query: 112 DQGVDINA 119
++G D++A
Sbjct: 114 EKGADVHA 121
>pdb|3IFV|A Chain A, Crystal Structure Of The Haloferax Volcanii Proliferating
Cell Nuclear Antigen
pdb|3IFV|B Chain B, Crystal Structure Of The Haloferax Volcanii Proliferating
Cell Nuclear Antigen
pdb|3IFV|C Chain C, Crystal Structure Of The Haloferax Volcanii Proliferating
Cell Nuclear Antigen
pdb|3HI8|A Chain A, Crystal Structure Of Proliferating Cell Nuclear Antigen
(Pcna) From Haloferax Volcanii
pdb|3HI8|B Chain B, Crystal Structure Of Proliferating Cell Nuclear Antigen
(Pcna) From Haloferax Volcanii
pdb|3HI8|C Chain C, Crystal Structure Of Proliferating Cell Nuclear Antigen
(Pcna) From Haloferax Volcanii
pdb|3HI8|D Chain D, Crystal Structure Of Proliferating Cell Nuclear Antigen
(Pcna) From Haloferax Volcanii
pdb|3HI8|E Chain E, Crystal Structure Of Proliferating Cell Nuclear Antigen
(Pcna) From Haloferax Volcanii
pdb|3HI8|F Chain F, Crystal Structure Of Proliferating Cell Nuclear Antigen
(Pcna) From Haloferax Volcanii
Length = 247
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 61 LDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHL-----ASYFGHKSVVEFLLDQGV 115
LD + L+D CK E +LS + +N+G L L SY H V+ L +
Sbjct: 15 LDSVSVLVDECKIRLNEESLSIRAVDPANVGMVDLTLDAAAFESYEAHGGVIGVNLSRLE 74
Query: 116 DINAVNDAGD 125
++ + AGD
Sbjct: 75 EVAGMAGAGD 84
>pdb|2A3N|A Chain A, Crystal Structure Of A Putative
Glucosamine-fructose-6-phosphate Aminotransferase
(stm4540.s) From Salmonella Typhimurium Lt2 At 1.35 A
Resolution
Length = 355
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 14/60 (23%)
Query: 73 ENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
+++V I LS+ G++K ++ ++ E+ QG+ + A+ D+PL +AA
Sbjct: 102 KDSVVITLSKSGDTKESV--------------AIAEWCKAQGIRVVAITKNADSPLAQAA 147
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 73 ENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
EN + +KG+ +S PLH S H+ + F++ QG D N G ++
Sbjct: 38 ENFRALCTGEKGKGRSG---KPLHYKSSVFHRVIPNFMI-QGGDFTRGNGTGGESIYGTT 93
Query: 133 F 133
F
Sbjct: 94 F 94
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 25.8 bits (55), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 64 IKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDA 123
I++ L++C + + LS G T + L+ S V L+D+GV + AVN+A
Sbjct: 29 IQKALNNCDQGKA-VRLSA--------GSTSVFLSGPLSLPSGVSLLIDKGVTLRAVNNA 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,168,878
Number of Sequences: 62578
Number of extensions: 149958
Number of successful extensions: 676
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 306
Number of HSP's gapped (non-prelim): 344
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)