RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15728
(139 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 72.8 bits (179), Expect = 2e-17
Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
NG L+ +K LL++ + N K N G TPLHLA+ GH +V+ LL++G
Sbjct: 15 ASNGHLEVVKLLLENGADVNA----------KDNDGRTPLHLAAKNGHLEIVKLLLEKGA 64
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
D+NA + G+TPLH AA G
Sbjct: 65 DVNARDKDGNTPLHLAARNGNL 86
Score = 72.0 bits (177), Expect = 3e-17
Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+NG L+ +K LL+ + N + G TPLHLA+ G+ VV+ LL G
Sbjct: 48 AKNGHLEIVKLLLEKGADVNA----------RDKDGNTPLHLAARNGNLDVVKLLLKHGA 97
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
D+NA + G TPLH AA G
Sbjct: 98 DVNARDKDGRTPLHLAAKNGHL 119
Score = 62.4 bits (152), Expect = 2e-13
Identities = 25/52 (48%), Positives = 33/52 (63%)
Query: 86 SKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
++ G TPLHLA+ GH VV+ LL+ G D+NA ++ G TPLH AA G
Sbjct: 2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHL 53
Score = 39.7 bits (93), Expect = 7e-05
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
Query: 54 YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
RNG LD +K LL H + N + G TPLHLA+ GH VV+ LL
Sbjct: 79 LAARNGNLDVVKLLLKHGADVNA----------RDKDGRTPLHLAAKNGHLEVVKLLL 126
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 68.1 bits (167), Expect = 4e-16
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 12/81 (14%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+NG L+ +K LL+ ++NL T LHLA+ G+ +V+ LL+ G
Sbjct: 5 AKNGNLELVKLLLEK----GADVNLGDTD--------TALHLAARNGNLEIVKLLLEHGA 52
Query: 116 DINAVNDAGDTPLHKAAFVGR 136
D+NA + G+T LH AA G
Sbjct: 53 DVNAKDKDGNTALHLAARNGN 73
Score = 57.3 bits (139), Expect = 7e-12
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 10/66 (15%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
RNG L+ +K LL+H + N +K G T LHLA+ G+ +V+ LL+ G
Sbjct: 36 ARNGNLEIVKLLLEHGADVN----------AKDKDGNTALHLAARNGNLEIVKLLLEHGA 85
Query: 116 DINAVN 121
DIN +
Sbjct: 86 DINLKD 91
Score = 43.0 bits (102), Expect = 2e-06
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 95 LHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
LHLA+ G+ +V+ LL++G D+N + DT LH AA G
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGN 40
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 56.1 bits (136), Expect = 7e-12
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAF 133
G T LH A+ G +V++LL++GVDIN ++ G+T LH AA
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAE 43
Score = 38.0 bits (89), Expect = 7e-05
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 10/56 (17%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
+G+L+ +K LL+ V+IN G T LH+A+ G+ V++ LL
Sbjct: 9 AISGRLELVKYLLEK----GVDINR------TDEDGNTALHIAAENGNLEVLKLLL 54
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 60.8 bits (148), Expect = 8e-12
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 48 IHELFLYNCRNGQLDKIKQLLDHC----KENNVE--INLSQKGESKSNLGWTPLHLASYF 101
+H N + L +K L+D +N V ++ K G+TPLH A Y
Sbjct: 145 LHLYLESNKID--LKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYN 202
Query: 102 GHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
+ V++LLD G + N VN GDTPLH A
Sbjct: 203 NNPEFVKYLLDLGANPNLVNKYGDTPLHIAI 233
Score = 40.0 bits (94), Expect = 1e-04
Identities = 27/115 (23%), Positives = 39/115 (33%), Gaps = 29/115 (25%)
Query: 38 AELNQLSVKEIHELFLYNCRN-GQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLH 96
A +N I L + ++ LLD+ N+ K++ G LH
Sbjct: 97 ANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNI----------KNSDGENLLH 146
Query: 97 LASYFGH------------------KSVVEFLLDQGVDINAVNDAGDTPLHKAAF 133
L K+ V +LL GV IN + G TPLH A +
Sbjct: 147 LYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVY 201
Score = 36.2 bits (84), Expect = 0.002
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 15/76 (19%)
Query: 62 DKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGH-----KSVVEFLLDQGVD 116
D +K LLD+ +IN S K S TPLH S + K +V+ LL+ G +
Sbjct: 49 DVVKILLDN----GADINSSTKNNS------TPLHYLSNIKYNLTDVKEIVKLLLEYGAN 98
Query: 117 INAVNDAGDTPLHKAA 132
+NA ++ G TPL A
Sbjct: 99 VNAPDNNGITPLLYAI 114
Score = 32.3 bits (74), Expect = 0.056
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 93 TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
PL+LA + VV+ LLD G DIN+ TPLH +
Sbjct: 37 LPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLS 76
Score = 30.0 bits (68), Expect = 0.35
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
Query: 53 LYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLD 112
Y N + +K LLD N NL + G TPLH+A +K + + LL+
Sbjct: 197 HYAVYNNNPEFVKYLLD--LGAN--PNL------VNKYGDTPLHIAILNNNKEIFKLLLN 246
Query: 113 QGVDINAVND 122
G I + +
Sbjct: 247 NGPSIKTIIE 256
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a
contiguous spiral stack such that ion transporters like
the anion exchanger associate in a large central cavity
formed by the ANK repeat spiral, while clathrin and cell
adhesion molecules associate with specific regions
outside this cavity.
Length = 33
Score = 49.9 bits (120), Expect = 1e-09
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVND 122
G TPLHLA+ GH VV+ LL+ G D+NA +
Sbjct: 2 GNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 49.7 bits (119), Expect = 2e-09
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 67 LLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDT 126
LL+H + + G TPLHLA+ +G +V++LL GVD+N + G T
Sbjct: 1 LLEHGPIDLN---------ATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLT 51
Query: 127 PLHKA 131
L A
Sbjct: 52 ALDLA 56
Score = 26.9 bits (60), Expect = 1.0
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 110 LLDQG-VDINAVNDAGDTPLHKAAFVGR 136
LL+ G +D+NA + G+TPLH AA G
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGA 28
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 50.8 bits (122), Expect = 2e-08
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 12/81 (14%)
Query: 51 LFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLH--LASYFGHKSVVE 108
L LY LD IK L+ ++N +K +G TPLH L+ + + V+
Sbjct: 87 LHLYLYNATTLDVIKLLIKA----GADVN------AKDKVGRTPLHVYLSGFNINPKVIR 136
Query: 109 FLLDQGVDINAVNDAGDTPLH 129
LL +G D+NA++ G TPL
Sbjct: 137 LLLRKGADVNALDLYGMTPLA 157
Score = 47.7 bits (114), Expect = 3e-07
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 73 ENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPL 128
+ IN +++ G TPLH A+ F + L+ G DINAV+ G+TPL
Sbjct: 245 IAGISIN------ARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPL 294
Score = 47.7 bits (114), Expect = 3e-07
Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 89 NLGWTPLHLASYFG--HKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
LG TPLH + +S+V LL G+ INA N G TPLH AA
Sbjct: 220 MLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAA 265
Score = 46.2 bits (110), Expect = 9e-07
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 17/93 (18%)
Query: 44 SVKEIHE--LFLYNCR--NGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLH-LA 98
SV I E L+ Y N ++++++LL +++ +GE G TPLH
Sbjct: 6 SVDIIMEAALYDYLLNASNVTVEEVRRLL------AAGADVNFRGE----YGKTPLHLYL 55
Query: 99 SYFGHKS--VVEFLLDQGVDINAVNDAGDTPLH 129
Y K +V LL+ G D+NA G TPLH
Sbjct: 56 HYSSEKVKDIVRLLLEAGADVNAPERCGFTPLH 88
Score = 28.8 bits (65), Expect = 0.87
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 85 ESKSNLGWTPLH--LASYFGHKSVVEFLLDQGVDINAVNDAGDTPLH 129
+ G TPL L S + ++ L+D G D+ AV+D + LH
Sbjct: 146 NALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLH 192
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 49.1 bits (116), Expect = 9e-08
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 19/130 (14%)
Query: 17 THDQVRTRHSSSEEETPNSLSAELNQLS-VKEIHELFLYNCRNGQLDKIKQLLDHCKENN 75
+ ++ ++S E L + + + + G +K LL
Sbjct: 41 LYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLAS----G 96
Query: 76 VEINLSQKGESKSNLGWTPLHLASYFGHKS-----VVEFLLDQGV---DINAVNDAGDTP 127
++N +K G TPLHLA+ G+ V + LL+ G N ++ G+TP
Sbjct: 97 ADVN------AKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTP 150
Query: 128 LHKAAFVGRE 137
LH AA G
Sbjct: 151 LHWAALNGDA 160
Score = 47.5 bits (112), Expect = 3e-07
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 55 NCRNGQLDKIKQLLDH--CKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLD 112
N G ++ K LL+ + N + G TPLH A+ G +VE LL+
Sbjct: 118 NPPEGNIEVAKLLLEAGADLDVNNLRDED---------GNTPLHWAALNGDADIVELLLE 168
Query: 113 QGVDINAVNDAGDTPLHKAA 132
G D N+ N G T L AA
Sbjct: 169 AGADPNSRNSYGVTALDPAA 188
Score = 25.6 bits (55), Expect = 9.4
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 73 ENNVEINLSQKG--ESKSNLGWTPLHLASYFGHKSVVEFLLD 112
+ VE+ L S+++ G T L A+ G +V+ LLD
Sbjct: 160 ADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLD 201
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities.
Length = 30
Score = 43.4 bits (103), Expect = 4e-07
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINA 119
G TPLHLA+ G+ +V+ LL+ G DINA
Sbjct: 2 GNTPLHLAARNGNLELVKLLLEHGADINA 30
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 42.2 bits (100), Expect = 1e-06
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINA 119
G TPLHLA+ G+ VV+ LLD+G DINA
Sbjct: 2 GRTPLHLAAENGNLEVVKLLLDKGADINA 30
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 41.4 bits (97), Expect = 4e-05
Identities = 19/41 (46%), Positives = 23/41 (56%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
G TPLH+A GH VV LL+ G D ++ G TPL A
Sbjct: 115 GRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELA 155
Score = 27.9 bits (62), Expect = 1.8
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 107 VEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
LL G D N + G TPLH A G
Sbjct: 98 ARILLTGGADPNCRDYDGRTPLHIACANGH 127
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 39.9 bits (93), Expect = 1e-04
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 23/116 (19%)
Query: 46 KEIHELFLYNCRNGQLDKIKQLLDHCKENNVE-------INLSQKGES------------ 86
E+ Y + G L+ IK L ++ + N+E I+++ K
Sbjct: 122 AELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGA 181
Query: 87 ----KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV 138
K N G +PLH A+ +G + ++ L+D G I G TPLH A R
Sbjct: 182 YANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSA 237
Score = 34.2 bits (78), Expect = 0.012
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 12/78 (15%)
Query: 54 YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ 113
G IK L+DH N++ K G+TPLH A ++S +E L++
Sbjct: 196 NAAEYGDYACIKLLIDH--GNHIMN--------KCKNGFTPLHNAIIH-NRSAIELLINN 244
Query: 114 GVDINAVNDAGDTPLHKA 131
IN + G TPLH A
Sbjct: 245 A-SINDQDIDGSTPLHHA 261
Score = 28.4 bits (63), Expect = 1.5
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 93 TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
TPL A G +VE + G DIN +N PL A +G
Sbjct: 37 TPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIG 79
>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional.
Length = 489
Score = 37.9 bits (88), Expect = 9e-04
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 78 INLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
I+++Q E LG+ PL+ + ++ + E+LL G DIN + + G+T L A
Sbjct: 249 IDINQVDE----LGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTA 298
Score = 27.9 bits (62), Expect = 1.8
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 13/74 (17%)
Query: 58 NGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLA---SYFGHKSVVEFLLDQG 114
LD +K L+ EN +IN K++ G TPL+ Y + ++ F+++ G
Sbjct: 86 KHMLDIVKILI----ENGADIN------KKNSDGETPLYCLLSNGYINNLEILLFMIENG 135
Query: 115 VDINAVNDAGDTPL 128
D ++ G T L
Sbjct: 136 ADTTLLDKDGFTML 149
Score = 27.1 bits (60), Expect = 3.8
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 78 INLSQKGESKSNLGWTPL-----HLASYFGHKSVVEFLLDQGVDINAVNDAGDTPL 128
INL N TPL ++ Y +V+ L++ G DIN N G+TPL
Sbjct: 58 INLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPL 113
Score = 26.7 bits (59), Expect = 4.6
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 88 SNLGWTPLHLASYFGHK---SVVEFLLDQGVDINAVND 122
G+T L + H +++ LL++GVDIN N+
Sbjct: 142 DKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNN 179
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 34.9 bits (80), Expect = 0.008
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Query: 62 DKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVN 121
D +K LL+H + N + LG T LH + + ++ LL+ G DIN++N
Sbjct: 249 DILKLLLEHGVDVNAK---------SYILGLTALHSS--IKSERKLKLLLEYGADINSLN 297
Query: 122 DAGDTPLHKA 131
TPL A
Sbjct: 298 SYKLTPLSSA 307
Score = 34.5 bits (79), Expect = 0.013
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 93 TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
+PLH A +K +V LL+ G +A + G+TPLH +
Sbjct: 203 SPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHIS 241
Score = 34.1 bits (78), Expect = 0.014
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 64 IKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDA 123
K LL + +IN+ + + G T LH A+ + + E LL G ++N +
Sbjct: 150 TKLLLSY----GADINMKDR-----HKGNTALHYATENKDQRLTELLLSYGANVNIPDKT 200
Query: 124 GDTPLHKA 131
++PLH A
Sbjct: 201 NNSPLHHA 208
Score = 28.3 bits (63), Expect = 1.5
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 77 EINLSQKGESKSN----LGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLH 129
I E+ S + + PLH A + VV+ LL +G ++N + TPLH
Sbjct: 19 YIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLH 75
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 34.3 bits (78), Expect = 0.015
Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 38 AELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHL 97
A++ LS K L C +K L+D N SK+ TPLH
Sbjct: 399 ADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVN----------SKNKDLSTPLHY 448
Query: 98 ASYFGHK-SVVEFLLDQGVDINAVNDAGDTPL 128
A K V+E LLD G D+NA+N PL
Sbjct: 449 ACKKNCKLDVIEMLLDNGADVNAINIQNQYPL 480
Score = 33.9 bits (77), Expect = 0.017
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 93 TPLHLASYFGHKS-VVEFLLDQGVDINAVNDAGDTPLHKAA 132
TPLH AS S +V LL++G D+NA N G+TPL+ A
Sbjct: 275 TPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMA 315
Score = 33.1 bits (75), Expect = 0.033
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 60 QLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSV-VEFLLDQGVDIN 118
Q + +L+ E ++N +K+ G TPL+L + G+ + + L+ G D+N
Sbjct: 282 QAPSLSRLVPKLLERGADVN------AKNIKGETPLYLMAKNGYDTENIRTLIMLGADVN 335
Query: 119 AVNDAGDTPLHKAAFVGR 136
A + TPLH+A+ + R
Sbjct: 336 AADRLYITPLHQASTLDR 353
Score = 31.6 bits (71), Expect = 0.12
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 93 TPLHLASYFG-HKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
TPLH AS +K +V LL+ G ++NA + TP+H AA
Sbjct: 343 TPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAA 383
Score = 30.4 bits (68), Expect = 0.26
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 43 LSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEIN--LSQKG---ESKSNLGWTPLHL 97
+S +IH Y+ N ++ +K + + +++ + I L + G +K TP+H
Sbjct: 129 ISGNDIH----YDKINESIEYMKLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHY 184
Query: 98 ASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
A+ G+ +V LL G D+N + + L A
Sbjct: 185 AAERGNAKMVNLLLSYGADVNIIALDDLSVLECA 218
Score = 28.5 bits (63), Expect = 1.2
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 93 TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
TP+H A+ + ++ LLD G DI A++ T LH A
Sbjct: 377 TPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFA 415
Score = 28.5 bits (63), Expect = 1.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 106 VVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
+ E LL+ G D+NA + TP+H AA G
Sbjct: 160 IAEMLLEGGADVNAKDIYCITPIHYAAERG 189
Score = 27.7 bits (61), Expect = 2.7
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 64 IKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSV-VEFLLDQGVDINAVND 122
I LLD+ + LSQK +G T LH A + + V+ L+D+G ++N+ N
Sbjct: 391 INTLLDYGADIEA---LSQK------IG-TALHFALCGTNPYMSVKTLIDRGANVNSKNK 440
Query: 123 AGDTPLHKA 131
TPLH A
Sbjct: 441 DLSTPLHYA 449
Score = 26.9 bits (59), Expect = 4.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 109 FLLDQGVDINAVNDAGDTPLHKAA 132
L D G +N+++D +TPLH A+
Sbjct: 258 LLYDAGFSVNSIDDCKNTPLHHAS 281
>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional.
Length = 154
Score = 32.9 bits (75), Expect = 0.025
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQ-GVDINAVNDAGDTPLHKA 131
G TPLH+A Y + + +L +Q GV++ +N A TP + A
Sbjct: 92 GNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVA 133
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 33.5 bits (76), Expect = 0.027
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGREV 138
G PLH+AS + +V LL G D NA + TPL+ + EV
Sbjct: 72 GNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEV 119
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 32.7 bits (74), Expect = 0.051
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 10/70 (14%)
Query: 59 GQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDIN 118
G + I+ L+DH ++E G TPL +A G ++ + LLD G +I+
Sbjct: 146 GDIKGIELLIDHKACLDIE----------DCCGCTPLIIAMAKGDIAICKMLLDSGANID 195
Query: 119 AVNDAGDTPL 128
G
Sbjct: 196 YFGKNGCVAA 205
Score = 30.7 bits (69), Expect = 0.23
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
G TPLHLA+ +++ L+ +G D + N +PLH A +G
Sbjct: 102 GMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMG 146
Score = 27.6 bits (61), Expect = 2.2
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 93 TPLHLASYFGHKSVVEFLLDQGVDINAV-NDAGDTPLHKA 131
+ LH A G VE LLD G + V G TPLH A
Sbjct: 70 SELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLA 109
Score = 26.9 bits (59), Expect = 4.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 93 TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPL 128
+PLHLA G +E L+D ++ + G TPL
Sbjct: 137 SPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPL 172
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 31.8 bits (72), Expect = 0.088
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 84 GESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
G+SK G TPLH+A+ G++ V LL +++ + G+T L A
Sbjct: 554 GDSK---GRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNA 598
Score = 27.9 bits (62), Expect = 1.8
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 64 IKQLLDHCKEN---NVEINLSQKGESKSNLGWTP-LHLASYFGHKSVVEFLLDQGVDINA 119
+K L H KE NV L G + L + G+ +++E LL +D +
Sbjct: 494 LKNFLQHHKELHDLNVGDLLGDNGGEHDDPNMASNLLTVASTGNAALLEELLKAKLDPDI 553
Query: 120 VNDAGDTPLHKAAFVGRE 137
+ G TPLH AA G E
Sbjct: 554 GDSKGRTPLHIAASKGYE 571
Score = 27.9 bits (62), Expect = 2.1
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Query: 57 RNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVD 116
+ L +K+LL +N+ +S+ + G T L +A H +V L+ G D
Sbjct: 631 KRNDLTAMKELLKQ------GLNV----DSEDHQGATALQVAMAEDHVDMVRLLIMNGAD 680
Query: 117 INAVN 121
++ N
Sbjct: 681 VDKAN 685
>gnl|CDD|184477 PRK14052, PRK14052, effector protein; Provisional.
Length = 387
Score = 31.9 bits (72), Expect = 0.090
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 4 KHGRIKFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFL 53
+HG++ F G +T V + + + S SAELNQL+ + + E L
Sbjct: 98 EHGQMLFKDGNLKTPSDVLNAFAKLDSKMVKSHSAELNQLAERAMSESLL 147
>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional.
Length = 764
Score = 30.3 bits (68), Expect = 0.34
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 15/106 (14%)
Query: 29 EEETPNSLSAELNQLSVKEIHE-LFLY--NCRNGQLDKIKQLLDHCKENNVEINLSQKGE 85
E N L+ VK I L Y RN + + L + V+++
Sbjct: 262 NPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFL----QPGVKLHY----- 312
Query: 86 SKSNLGWTPLH--LASYFGHKSVVEFLLDQGVDINAVNDAGDTPLH 129
K + G T LH + + +++ L + G D+N ++ G+T LH
Sbjct: 313 -KDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLH 357
Score = 29.5 bits (66), Expect = 0.60
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 106 VVEFLLDQGVDINAVNDAGDTPL 128
V++ L+ G DI AVN G TPL
Sbjct: 381 VIQCLISLGADITAVNCLGYTPL 403
Score = 28.3 bits (63), Expect = 1.4
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 14/79 (17%)
Query: 55 NCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSV----VEFL 110
N R LD IK ++D V +N K G+ LH +Y G+ V +E+L
Sbjct: 149 NTRGIDLDLIKYMVD---VGIVNLNYVCK-----KTGYGILH--AYLGNMYVDIDILEWL 198
Query: 111 LDQGVDINAVNDAGDTPLH 129
+ GV++N N+ TPLH
Sbjct: 199 CNNGVNVNLQNNHLITPLH 217
>gnl|CDD|233405 TIGR01418, PEP_synth, phosphoenolpyruvate synthase. Also called
pyruvate,water dikinase and PEP synthase. The member
from Methanococcus jannaschii contains a large intein.
This enzyme generates phosphoenolpyruvate (PEP) from
pyruvate, hydrolyzing ATP to AMP and releasing inorganic
phosphate in the process. The enzyme shows extensive
homology to other enzymes that use PEP as substrate or
product. This enzyme may provide PEP for
gluconeogenesis, for PTS-type carbohydrate transport
systems, or for other processes [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 782
Score = 30.1 bits (68), Expect = 0.37
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 16/70 (22%)
Query: 53 LYNCRN-GQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L++ RN L I+ + KE+ ++ + + S + VVEFL+
Sbjct: 712 LFDERNPAVLRLIEMAIKAAKEHGKKVGICGQAPSD---------------YPEVVEFLV 756
Query: 112 DQGVDINAVN 121
++G+D ++N
Sbjct: 757 EEGIDSISLN 766
>gnl|CDD|165157 PHA02795, PHA02795, ankyrin-like protein; Provisional.
Length = 437
Score = 29.6 bits (66), Expect = 0.54
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
G T L+ A Y G+ +V +LL+ G ++NAV G T L A
Sbjct: 221 GRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVA 261
>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional.
Length = 209
Score = 29.4 bits (66), Expect = 0.55
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 65 KQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKS--VVEFLLDQGVDINAVND 122
++L EN ++N + + S L H S+ + +++ L+D G I ++
Sbjct: 66 VEILKFLIENGADVNFKTRDNNLSALH----HYLSFNKNVEPEILKILIDSGSSITEEDE 121
Query: 123 AGDTPLH 129
G LH
Sbjct: 122 DGKNLLH 128
Score = 27.9 bits (62), Expect = 1.6
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 97 LASYF---GHKSVVEFLLDQGVDINAVNDAGDTP 127
L SY K + +FL G+DIN N +G
Sbjct: 162 LYSYILFHSDKKIFDFLTSLGIDINETNKSGYNC 195
>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional.
Length = 284
Score = 28.9 bits (64), Expect = 0.87
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 94 PLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
PLH A+ +V+ LL G+D + +D G+T L+ A G
Sbjct: 64 PLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSG 105
>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional.
Length = 494
Score = 28.9 bits (65), Expect = 0.93
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 87 KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPL 128
K G+ PL +++ + +LL G DI V+ GDT L
Sbjct: 252 KDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVL 293
>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family. This repeat has no known
function. It is about 35 amino acids long and is found
in up to 18 copies in some proteins. The family appears
to be greatly expanded in plants and fungi. The repeat
has been called PPR.
Length = 50
Score = 26.2 bits (59), Expect = 1.7
Identities = 7/32 (21%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 54 YN------CRNGQLDKIKQLLDHCKENNVEIN 79
YN C+ G++++ +L + K+ ++ N
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPN 37
>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional.
Length = 300
Score = 28.0 bits (62), Expect = 1.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 93 TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFV 134
TPL+++ G +E LL G DIN + TP+ A +
Sbjct: 106 TPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMI 147
>gnl|CDD|234583 PRK00029, PRK00029, hypothetical protein; Validated.
Length = 487
Score = 27.8 bits (63), Expect = 1.9
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 3/22 (13%)
Query: 50 ELFLYNCRNGQLDKIKQLLDHC 71
E F Y G + ++QL D+
Sbjct: 189 ERFAYR---GDPELLRQLADYV 207
>gnl|CDD|129359 TIGR00257, IMPACT_YIGZ, uncharacterized protein, YigZ family. This
uncharacterized protein family includes YigZ, which has
been crystallized, from E. coli. YigZ is homologous to
the protein product of the mouse IMPACT gene.
Crystallography shows a two-domain stucture, and the
C-terminal domain is suggested to bind nucleic acids.
The function is unknown. Note that the ortholog from E.
coli was shown fused to the pepQ gene in GenBank entry
X54687. This caused occasional misidentification of this
protein as pepQ; this family is found in a number of
species that lack pepQ [Unknown function, General].
Length = 204
Score = 27.5 bits (61), Expect = 2.0
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 13/78 (16%)
Query: 34 NSLSAELNQLSVKEIHELFLY--NCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLG 91
S++ LN ++ +E EL + C QL I+ L C+ + N S
Sbjct: 119 KSVNEALNNITTEEKTELEILSLQCDYHQLTGIEAELGKCQGEIINSNFSNN-------- 170
Query: 92 WTPLHLASYFGHKSVVEF 109
+ L K V F
Sbjct: 171 ---VLLRVALPTKEVAAF 185
>gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional.
Length = 354
Score = 27.7 bits (62), Expect = 2.2
Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 5/38 (13%)
Query: 46 KEIHELFLYNCRN--GQL---DKIKQLLDHCKENNVEI 78
+EI +FL N N GQL +++K++LD C++ N+ +
Sbjct: 140 EEIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYL 177
>gnl|CDD|213947 TIGR04334, rSAM_Clo7bot, radical SAM/SPASM domain Clo7bot peptide
maturase. In multiple strains of Clostridium botulinum,
this single radical SAM domain protein occurs next to a
tandem array of seven homologous Cys-rich small peptides
(see TIGR04333). Because this radical SAM enzyme
contains the SPASM domain, associated with peptide
modification, it is proposed to modify all seven C.
botulinum targets, hence the name Clo7bot for this
system. Suggested gene symbol is ctpM (Clostridial
Tandem Peptide Maturase) [Protein fate, Protein
modification and repair].
Length = 440
Score = 27.5 bits (61), Expect = 2.6
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 22 RTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKEN---NVEI 78
R + +S+E T + + + +L I+ + N +D I++LLD +EN +V I
Sbjct: 213 RRKLKNSDEGTFEVILSNVKKLKKNGINIIIRMNIDKTNMDSIEELLDILEENGLKDVSI 272
Query: 79 NLSQ 82
+L +
Sbjct: 273 SLGK 276
>gnl|CDD|236157 PRK08126, PRK08126, hypothetical protein; Provisional.
Length = 432
Score = 27.3 bits (61), Expect = 2.6
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 6 GRIKFAPGGNRTHDQVRTR 24
GR G R +Q+R R
Sbjct: 191 GRYSVEADGRRKLEQIRQR 209
>gnl|CDD|165155 PHA02792, PHA02792, ankyrin-like protein; Provisional.
Length = 631
Score = 27.6 bits (61), Expect = 2.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDT 126
G + L+ S+VE+L+D G DIN G T
Sbjct: 410 GRSILYYCIESHSVSLVEWLIDNGADINITTKYGST 445
>gnl|CDD|223474 COG0397, COG0397, Uncharacterized conserved protein [Function
unknown].
Length = 488
Score = 27.3 bits (61), Expect = 2.9
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 3/22 (13%)
Query: 50 ELFLYNCRNGQLDKIKQLLDHC 71
E F Y + D ++QL DH
Sbjct: 189 ERFAYR---DRRDLLRQLADHV 207
>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional.
Length = 661
Score = 27.3 bits (60), Expect = 3.5
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDT 126
G T LH A + +S+V LL+ G D+N ++ G T
Sbjct: 452 GETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYT 487
>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional.
Length = 166
Score = 26.3 bits (58), Expect = 4.7
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 48 IHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVV 107
H + Y+ R + KI+ L+ N+ +++ + + G T LH+A+ + +
Sbjct: 61 THMVAWYD-RANAVMKIELLV------NMGADINAR---ELGTGNTLLHIAASTKNYELA 110
Query: 108 EFLLDQ-GVDINAVNDAGDTPLHKAAF 133
E+L Q GV++ A+N +T H A
Sbjct: 111 EWLCRQLGVNLGAINYQHETAYHIAYK 137
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 26.6 bits (59), Expect = 5.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 94 PLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLH 129
PL+ A+ G S+V L + DI + G+T LH
Sbjct: 178 PLNAAACLGSPSIVALLSEDPADILTADSLGNTLLH 213
>gnl|CDD|132850 cd07211, Pat_PNPLA8, Patatin-like phospholipase domain containing
protein 8. PNPLA8 is a Ca-independent myocardial
phospholipase which maintains mitochondrial integrity.
PNPLA8 is also known as iPLA2-gamma. In humans, it is
predominantly expressed in heart tissue. iPLA2-gamma
can catalyze both phospholipase A1 and A2 reactions
(PLA1 and PLA2 respectively). This family includes
PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from
Mus musculus.
Length = 308
Score = 26.1 bits (58), Expect = 8.1
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
Query: 39 ELNQLSVKEIHELFLYNCRN------GQLDKIKQL-LDHCKE 73
++ +L+ K IHELF Y C L +K++ LD C+E
Sbjct: 29 KIEKLTGKPIHELFDYICGVSTGAILAFLLGLKKMSLDECEE 70
>gnl|CDD|197953 smart00885, D5_N, D5 N terminal like. This domain is found in D5
proteins of DNA viruses and bacteriophage P4 DNA
primases phages.
Length = 141
Score = 25.4 bits (56), Expect = 8.7
Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 52 FLYNCRNGQLD-KIKQLLDH 70
L N NG LD + +L H
Sbjct: 90 HLINFPNGVLDLRTGELRPH 109
>gnl|CDD|238131 cd00213, S-100, S-100: S-100 domain, which represents the largest
family within the superfamily of proteins carrying the
Ca-binding EF-hand motif. Note that this S-100
hierarchy contains only S-100 EF-hand domains, other
EF-hands have been modeled separately. S100 proteins
are expressed exclusively in vertebrates, and are
implicated in intracellular and extracellular
regulatory activities. Intracellularly, S100 proteins
act as Ca-signaling or Ca-buffering proteins. The most
unusual characteristic of certain S100 proteins is
their occurrence in extracellular space, where they act
in a cytokine-like manner through RAGE, the receptor
for advanced glycation products. Structural data
suggest that many S100 members exist within cells as
homo- or heterodimers and even oligomers;
oligomerization contributes to their functional
diversification. Upon binding calcium, most S100
proteins change conformation to a more open structure
exposing a hydrophobic cleft. This hydrophobic surface
represents the interaction site of S100 proteins with
their target proteins. There is experimental evidence
showing that many S100 proteins have multiple binding
partners with diverse mode of interaction with
different targets. In addition to S100 proteins (such
as S100A1,-3,-4,-6,-7,-10,-11,and -13), this group
includes the ''fused'' gene family, a group of calcium
binding S100-related proteins. The ''fused'' gene
family includes multifunctional epidermal
differentiation proteins - profilaggrin, trichohyalin,
repetin, hornerin, and cornulin; functionally these
proteins are associated with keratin intermediate
filaments and partially crosslinked to the cell
envelope. These ''fused'' gene proteins contain
N-terminal sequence with two Ca-binding EF-hands motif,
which may be associated with calcium signaling in
epidermal cells and autoprocessing in a
calcium-dependent manner. In contrast to S100 proteins,
"fused" gene family proteins contain an extraordinary
high number of almost perfect peptide repeats with
regular array of polar and charged residues similar to
many known cell envelope proteins.
Length = 88
Score = 24.8 bits (55), Expect = 8.8
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 27 SSEEETPNSLS-AELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVE 77
S +E ++LS EL +L E+ +DKI + LD K+ V+
Sbjct: 18 SGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVD 69
>gnl|CDD|219768 pfam08267, Meth_synt_1, Cobalamin-independent synthase, N-terminal
domain. The N-terminal domain and C-terminal domains of
cobalamin-independent synthases together define a
catalytic cleft in the enzyme. The N-terminal domain is
thought to bind the substrate, in particular, the
negatively charged polyglutamate chain. The N-terminal
domain is also thought to stabilise a loop from the
C-terminal domain.
Length = 310
Score = 25.7 bits (57), Expect = 8.9
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 18/87 (20%)
Query: 34 NSLSAELNQLSVK--EIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLG 91
L EL + +I E L LD K+ L+ KE + SK L
Sbjct: 184 KELLKELAAAGAEWVQIDEPALV------LDLPKEWLEAFKE------AYAELASKGGL- 230
Query: 92 WTPLHLASYFGHKS-VVEFLLDQGVDI 117
L LA+YFG + +E L VD
Sbjct: 231 --KLLLATYFGSVADALELLASLPVDG 255
>gnl|CDD|235467 PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase;
Reviewed.
Length = 299
Score = 25.5 bits (57), Expect = 9.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 31 ETPNSLSAELNQLSVKEIHELF 52
E N S +L+QLS EI L
Sbjct: 9 EQRNPASMDLDQLSTLEILRLI 30
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.131 0.382
Gapped
Lambda K H
0.267 0.0703 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,652,196
Number of extensions: 552784
Number of successful extensions: 580
Number of sequences better than 10.0: 1
Number of HSP's gapped: 562
Number of HSP's successfully gapped: 102
Length of query: 139
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 52
Effective length of database: 7,078,804
Effective search space: 368097808
Effective search space used: 368097808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.6 bits)