RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15728
(139 letters)
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 83.6 bits (208), Expect = 5e-22
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+NG LD++K + ++N G PLH A+ G ++EFLL +G
Sbjct: 15 LKNGDLDEVKDYV----AKGEDVN------RTLEGGRKPLHYAADCGQLEILEFLLLKGA 64
Query: 116 DINAVNDAGDTPLHKAAFVGR 136
DINA + TPL A + G
Sbjct: 65 DINAPDKHHITPLLSAVYEGH 85
Score = 79.7 bits (198), Expect = 1e-20
Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 10/77 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
GQL+ ++ LL +IN + TPL A Y GH S V+ LL +G
Sbjct: 48 ADCGQLEILEFLLLK----GADIN------APDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
Query: 116 DINAVNDAGDTPLHKAA 132
D G T
Sbjct: 98 DKTVKGPDGLTAFEATD 114
Score = 74.4 bits (184), Expect = 2e-18
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 89 NLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
++ A G V+ + +G D+N + G PLH AA G+
Sbjct: 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQ 52
Score = 24.7 bits (55), Expect = 8.7
Identities = 3/17 (17%), Positives = 4/17 (23%)
Query: 119 AVNDAGDTPLHKAAFVG 135
+ D A G
Sbjct: 2 PLGSMCDKEFMWALKNG 18
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 84.7 bits (211), Expect = 5e-22
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
G++ + ++ IN G+TPL A+ G +VVEFLL G
Sbjct: 11 AAQGEMLYLATRIEQ----ENVIN------HTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
D + ++ L A G
Sbjct: 61 DPQLLGKGRESALSLACSKGYT 82
Score = 82.4 bits (205), Expect = 5e-21
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
C G D +K LLD V++N G TPL A + H V+ LL+ G
Sbjct: 77 CSKGYTDIVKMLLDC----GVDVN------EYDWNGGTPLLYAVHGNHVKCVKMLLESGA 126
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
D D+G + A +G
Sbjct: 127 DPTIETDSGYNSMDLAVALGYR 148
Score = 72.0 bits (178), Expect = 4e-17
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
+H + G + ++Q IN ++ G TPL AA G+
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQI 49
Score = 60.9 bits (149), Expect = 9e-13
Identities = 9/67 (13%), Positives = 24/67 (35%), Gaps = 10/67 (14%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+ +K LL+ + +++ G+ + LA G++SV + + +
Sbjct: 110 VHGNHVKCVKMLLES----GADPT------IETDSGYNSMDLAVALGYRSVQQVIESHLL 159
Query: 116 DINAVND 122
+
Sbjct: 160 KLLQNIK 166
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 84.8 bits (211), Expect = 6e-22
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
G+LD++K+ L + +N G+TPL AS FG V FLL+ G
Sbjct: 10 AAQGELDQLKEHLRK---GDNLVN------KPDERGFTPLIWASAFGEIETVRFLLEWGA 60
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
D + + ++ L A+ G
Sbjct: 61 DPHILAKERESALSLASTGGYT 82
Score = 83.6 bits (208), Expect = 2e-21
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
G D + LL+ +V+IN G TPL A H VE LL +G
Sbjct: 77 STGGYTDIVGLLLER----DVDIN------IYDWNGGTPLLYAVRGNHVKCVEALLARGA 126
Query: 116 DINAVNDAGDTPLHKAAFVG 135
D+ D+G TP+ A +G
Sbjct: 127 DLTTEADSGYTPMDLAVALG 146
Score = 70.1 bits (173), Expect = 3e-16
Identities = 12/72 (16%), Positives = 30/72 (41%), Gaps = 10/72 (13%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R + ++ LL ++ ++++ G+TP+ LA G++ V + + + +
Sbjct: 110 VRGNHVKCVEALLAR----GADLT------TEADSGYTPMDLAVALGYRKVQQVIENHIL 159
Query: 116 DINAVNDAGDTP 127
+ N P
Sbjct: 160 KLFQSNLVPADP 171
Score = 65.9 bits (162), Expect = 1e-14
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVD-INAVNDAGDTPLHKAAFVG 135
+H + G ++ L +G + +N ++ G TPL A+ G
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFG 47
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 84.8 bits (211), Expect = 8e-22
Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 24/106 (22%)
Query: 56 CRNGQLDKIKQLLDH-------------------CKENNVEI--NLSQKG---ESKSNLG 91
CR G ++ LD+ C+E + L +G +
Sbjct: 13 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 72
Query: 92 WTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
TPLHLA+ GH+ +V+ LL DINAVN+ G+ PLH A F G++
Sbjct: 73 DTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD 118
Score = 80.9 bits (201), Expect = 2e-20
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+G D +++LL + +IN + + G PLH A ++G V E L+ G
Sbjct: 80 ASHGHRDIVQKLLQY----KADIN------AVNEHGNVPLHYACFWGQDQVAEDLVANGA 129
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
++ N G+ P+ KA RE
Sbjct: 130 LVSICNKYGEMPVDKAKAPLRE 151
Score = 67.1 bits (165), Expect = 4e-15
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 88 SNLGWTPLHLASYFGHKSVVEFLLDQG-VDINAVNDAGDTPLHKAAFVGR 136
S + G+ V LD D+N +D G +PLH A GR
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGR 51
Score = 61.3 bits (150), Expect = 7e-13
Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 16/81 (19%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
C GQ + L+ + ++ + G P+ A + + E G
Sbjct: 113 CFWGQDQVAEDLVAN----GALVS------ICNKYGEMPVDKAKAPLRELLRERAEKMGQ 162
Query: 116 DINAVNDAGDTPLHKAAFVGR 136
++N P + G
Sbjct: 163 NLNR------IPYKDTFWKGT 177
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 81.2 bits (202), Expect = 4e-21
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 10/82 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
RNG L+ +K LL+ ++N +K G TPLHLA+ GH VV+ LL+ G
Sbjct: 43 ARNGHLEVVKLLLEA----GADVN------AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
D+NA + G TPLH AA G
Sbjct: 93 DVNAKDKNGRTPLHLAARNGHL 114
Score = 80.1 bits (199), Expect = 1e-20
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 10/82 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
RNG L+ +K LL+ ++N +K G TPLHLA+ GH VV+ LL+ G
Sbjct: 10 ARNGHLEVVKLLLEA----GADVN------AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
D+NA + G TPLH AA G
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHL 81
Score = 73.1 bits (181), Expect = 6e-18
Identities = 25/45 (55%), Positives = 30/45 (66%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
G TPLHLA+ GH VV+ LL+ G D+NA + G TPLH AA G
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 46
Score = 53.5 bits (130), Expect = 2e-10
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 10/59 (16%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG 114
RNG L+ +K LL+ ++N +K G TPLHLA+ GH VV+ LL+ G
Sbjct: 76 ARNGHLEVVKLLLEA----GADVN------AKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 81.3 bits (202), Expect = 5e-21
Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
G + ++ LL + + N K + GWTPLH A GH VVE LL
Sbjct: 18 SIKGDIPSVEYLLQN----GSDPN------VKDHAGWTPLHEACNHGHLKVVELLLQHKA 67
Query: 116 DINAVNDAGDTPLHKAAFVGR 136
+N D+PLH AA G
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGH 88
Score = 78.6 bits (195), Expect = 6e-20
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
C +G L ++ LL H +N + +PLH A+ GH +V+ LL G
Sbjct: 51 CNHGHLKVVELLLQH----KALVN------TTGYQNDSPLHDAAKNGHVDIVKLLLSYGA 100
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
NAVN G P+ +
Sbjct: 101 SRNAVNIFGLRPVDYTDDESMK 122
Score = 75.9 bits (188), Expect = 8e-19
Identities = 22/50 (44%), Positives = 28/50 (56%)
Query: 87 KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
++ G T LH+AS G VE+LL G D N + AG TPLH+A G
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGH 55
Score = 46.6 bits (112), Expect = 9e-08
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 11/64 (17%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+NG +D +K LL + N + + G P+ KS++ L ++
Sbjct: 84 AKNGHVDIVKLLLSY----GASRN------AVNIFGLRPVDYTDDESMKSLLL-LPEKNE 132
Query: 116 DINA 119
+A
Sbjct: 133 SSSA 136
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 79.3 bits (197), Expect = 9e-21
Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
RNG L+ +K LL+ ++N +K G TPLHLA+ GH VV+ LL+ G
Sbjct: 10 ARNGHLEVVKLLLEA----GADVN------AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 116 DINAVNDAGDTPLHKAAFVG 135
D+NA + G TPLH AA G
Sbjct: 60 DVNAKDKNGRTPLHLAARNG 79
Score = 73.9 bits (183), Expect = 1e-18
Identities = 25/45 (55%), Positives = 30/45 (66%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
G TPLHLA+ GH VV+ LL+ G D+NA + G TPLH AA G
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 46
Score = 52.4 bits (127), Expect = 3e-10
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 10/59 (16%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG 114
RNG L+ +K LL+ ++N +K G TPLHLA+ GH VV+ LL+ G
Sbjct: 43 ARNGHLEVVKLLLEA----GADVN------AKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 81.3 bits (202), Expect = 1e-20
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+ G ++ +K+L +V TPLH A+ + SVVE+LL G
Sbjct: 16 AKAGDVETVKKLCTV---QSVNCR------DIEGRQSTPLHFAAGYNRVSVVEYLLQHGA 66
Query: 116 DINAVNDAGDTPLHKAAFVGR 136
D++A + G PLH A G
Sbjct: 67 DVHAKDKGGLVPLHNACSYGH 87
Score = 76.7 bits (190), Expect = 6e-19
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
++ ++ LL H +++ +K G PLH A +GH V E L+ G
Sbjct: 50 AGYNRVSVVEYLLQH----GADVH------AKDKGGLVPLHNACSYGHYEVAELLVKHGA 99
Query: 116 DINAVNDAGDTPLHKAAFVGR 136
+N + TPLH+AA G+
Sbjct: 100 VVNVADLWKFTPLHEAAAKGK 120
Score = 74.7 bits (185), Expect = 4e-18
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 10/77 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
C G + + L+ H +N +TPLH A+ G + + LL G
Sbjct: 83 CSYGHYEVAELLVKH----GAVVN------VADLWKFTPLHEAAAKGKYEICKLLLQHGA 132
Query: 116 DINAVNDAGDTPLHKAA 132
D N G+TPL
Sbjct: 133 DPTKKNRDGNTPLDLVK 149
Score = 64.3 bits (158), Expect = 4e-14
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 91 GWTPLHLASYFGHKSVVEFLLD-QGVDINAVNDAGDTPLHKAAFVGR 136
L A+ G V+ L Q V+ + TPLH AA R
Sbjct: 8 ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNR 54
Score = 43.5 bits (104), Expect = 3e-06
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 11/59 (18%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG 114
G+ + K LL H + K+ G TPL L G + + L
Sbjct: 116 AAKGKYEICKLLLQH----GADPT------KKNRDGNTPLDLVKD-GDTDIQDLLRGDA 163
Score = 25.4 bits (57), Expect = 6.0
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 120 VNDAGDTPLHKAAFVGR 136
N D L +AA G
Sbjct: 4 GNSEADRQLLEAAKAGD 20
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 82.1 bits (204), Expect = 2e-20
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
G L + +L++ ++ E++ +NL TPLHLA SVV L+ G
Sbjct: 17 VVQGNLPAVHRLVNLFQQGGRELD------IYNNLRQTPLHLAVITTLPSVVRLLVTAGA 70
Query: 116 DINAVNDAGDTPLHKAAFVGR 136
A++ G T H A
Sbjct: 71 SPMALDRHGQTAAHLACEHRS 91
Score = 79.0 bits (196), Expect = 4e-19
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
C + ++ LLD +++ +++ G T LH+A + V+ LL++G
Sbjct: 87 CEHRSPTCLRALLDSAAPGTLDLE------ARNYDGLTALHVAVNTECQETVQLLLERGA 140
Query: 116 DINAVN-DAGDTPLHKAAFVGR 136
DI+AV+ +G +PL A
Sbjct: 141 DIDAVDIKSGRSPLIHAVENNS 162
Score = 77.5 bits (192), Expect = 1e-18
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
N L ++ LL H +N ++ G + LH AS G +V L+ G
Sbjct: 158 VENNSLSMVQLLLQH----GANVN------AQMYSGSSALHSASGRGLLPLVRTLVRSGA 207
Query: 116 DINAVNDAGDTPLHKAAF 133
D + N DTPL A
Sbjct: 208 DSSLKNCHNDTPLMVARS 225
Score = 75.2 bits (186), Expect = 1e-17
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+ ++ LL+ +I+ G +PL A S+V+ LL G
Sbjct: 124 VNTECQETVQLLLER----GADID-----AVDIKSGRSPLIHAVENNSLSMVQLLLQHGA 174
Query: 116 DINAVNDAGDTPLHKAAFVG 135
++NA +G + LH A+ G
Sbjct: 175 NVNAQMYSGSSALHSASGRG 194
Score = 72.5 bits (179), Expect = 9e-17
Identities = 17/84 (20%), Positives = 25/84 (29%), Gaps = 14/84 (16%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG- 114
++ L+ + G T HLA + + LLD
Sbjct: 54 VITTLPSVVRLLVTA----GASPM------ALDRHGQTAAHLACEHRSPTCLRALLDSAA 103
Query: 115 ---VDINAVNDAGDTPLHKAAFVG 135
+D+ A N G T LH A
Sbjct: 104 PGTLDLEARNYDGLTALHVAVNTE 127
Score = 64.8 bits (159), Expect = 8e-14
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 86 SKSNLGWTPLHLASYFGHKSVVEFLLD----QGVDINAVNDAGDTPLHKAAFVGRE 137
G TPLH+A G+ V L++ G +++ N+ TPLH A
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLP 59
Score = 50.5 bits (122), Expect = 1e-08
Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 10/59 (16%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG 114
G L ++ L+ + + K+ TPL +A ++ +
Sbjct: 191 SGRGLLPLVRTLVRS----GADSS------LKNCHNDTPLMVARSRRVIDILRGKATRP 239
Score = 27.4 bits (62), Expect = 1.6
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 117 INAVNDAGDTPLHKAAFVG 135
++ GDTPLH A G
Sbjct: 2 ATRADEDGDTPLHIAVVQG 20
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 80.5 bits (200), Expect = 3e-20
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R G+ D+++ L+ + ++N ++ GWTPLHLA++ GH +VE LL G
Sbjct: 22 ARAGRDDEVRILMAN----GADVN------AEDASGWTPLHLAAFNGHLEIVEVLLKNGA 71
Query: 116 DINAVNDAGDTPLHKAAFVG 135
D+NAV+ AG TPL AA G
Sbjct: 72 DVNAVDHAGMTPLRLAALFG 91
Score = 76.2 bits (189), Expect = 1e-18
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
G L+ ++ LL + ++N + G TPLHLA+ FGH +VE LL G
Sbjct: 88 ALFGHLEIVEVLLKN----GADVN------ANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
D+NA + G T + G E
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNE 159
Score = 70.5 bits (174), Expect = 2e-16
Identities = 18/51 (35%), Positives = 24/51 (47%)
Query: 86 SKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
+ L A+ G V L+ G D+NA + +G TPLH AAF G
Sbjct: 9 HHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGH 59
Score = 45.4 bits (109), Expect = 5e-07
Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 10/56 (17%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
G L+ ++ LL + ++N ++ G T ++ G++ + E L
Sbjct: 121 AMFGHLEIVEVLLKN----GADVN------AQDKFGKTAFDISIDNGNEDLAEILQ 166
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 81.3 bits (202), Expect = 3e-20
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
C G L+ +K L D + ++ +N G T LHLA V +FL++ G
Sbjct: 80 CSVGNLEVVKSLYDRPLKPDLN--------KITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 116 DINAVNDAGDTPLHKAAFVG 135
+ + PLH+AA VG
Sbjct: 132 SVRIKDKFNQIPLHRAASVG 151
Score = 75.2 bits (186), Expect = 9e-18
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
C + K+++LL + K G PLH + F + FLL +
Sbjct: 10 CMENEFFKVQELLH---SKPSLLL------QKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 116 DINA---VNDAGDTPLHKAAFVGR 136
++N +D+G TP H A VG
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGN 84
Score = 74.0 bits (183), Expect = 2e-17
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 9/83 (10%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ-- 113
+ LL +N + + GWTP H+A G+ VV+ L D+
Sbjct: 44 VSFQAHEITSFLLSK----MENVN---LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPL 96
Query: 114 GVDINAVNDAGDTPLHKAAFVGR 136
D+N + + G T LH A
Sbjct: 97 KPDLNKITNQGVTCLHLAVGKKW 119
Score = 74.0 bits (183), Expect = 3e-17
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 11/82 (13%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+ + L+++ + K PLH A+ G ++E L G
Sbjct: 115 VGKKWFEVSQFLIEN----GASVR------IKDKFNQIPLHRAASVGSLKLIELLCGLGK 164
Query: 116 -DINAVNDAGDTPLHKAAFVGR 136
+N + G TPL A G
Sbjct: 165 SAVNWQDKQGWTPLFHALAEGH 186
Score = 73.6 bits (182), Expect = 3e-17
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 10/78 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ-G 114
G L I+ L +N + GWTPL A GH L+++ G
Sbjct: 148 ASVGSLKLIELLCGL---GKSAVN------WQDKQGWTPLFHALAEGHGDAAVLLVEKYG 198
Query: 115 VDINAVNDAGDTPLHKAA 132
+ + V++ G A
Sbjct: 199 AEYDLVDNKGAKAEDVAL 216
Score = 64.8 bits (159), Expect = 8e-14
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 90 LGWTPLHLASYFGHKS-VVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
+ PLH A V E L + + + G PLH +
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQA 48
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 78.2 bits (194), Expect = 5e-20
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+NG +++K+LL ++N ++S G TPLHLA+ GH +V+ LL +G
Sbjct: 17 AKNGHAEEVKKLLSK----GADVN------ARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 116 DINAVNDAGDTPLHKAAFVG 135
D+NA + G+TP H A G
Sbjct: 67 DVNARSKDGNTPEHLAKKNG 86
Score = 73.6 bits (182), Expect = 3e-18
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+NG + +K LL ++N ++S G TP HLA GH +V+ L +G
Sbjct: 50 AKNGHAEIVKLLLAK----GADVN------ARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99
Query: 116 DINAVNDAGDTPLH 129
D+NA + H
Sbjct: 100 DVNARSWGSSHHHH 113
Score = 72.8 bits (180), Expect = 7e-18
Identities = 24/50 (48%), Positives = 30/50 (60%)
Query: 87 KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
S G TPLH A+ GH V+ LL +G D+NA + G+TPLH AA G
Sbjct: 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGH 54
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 79.4 bits (197), Expect = 5e-20
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R GQ D+++ L+ + LG +PLHLA+ +GH S E LL GV
Sbjct: 10 ARAGQDDEVRILMAN----GAPFT-------TDWLGTSPLHLAAQYGHFSTTEVLLRAGV 58
Query: 116 DINAVNDAGDTPLHKAAFVGR 136
+A TPLH AA G
Sbjct: 59 SRDARTKVDRTPLHMAASEGH 79
Score = 76.7 bits (190), Expect = 6e-19
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+ G + LL V + +++ + TPLH+A+ GH ++VE LL G
Sbjct: 42 AQYGHFSTTEVLLRA----GVSRD------ARTKVDRTPLHMAASEGHANIVEVLLKHGA 91
Query: 116 DINAVNDAGDTPLHKAAFVGR 136
D+NA + T LH A
Sbjct: 92 DVNAKDMLKMTALHWATEHNH 112
Score = 74.7 bits (185), Expect = 3e-18
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
G + ++ LL H ++N +K L T LH A+ H+ VVE L+ G
Sbjct: 75 ASEGHANIVEVLLKH----GADVN------AKDMLKMTALHWATEHNHQEVVELLIKYGA 124
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
D++ + T + G E
Sbjct: 125 DVHTQSKFCKTAFDISIDNGNE 146
Score = 64.7 bits (159), Expect = 2e-14
Identities = 13/46 (28%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
L A+ G V L+ G G +PLH AA G
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFTTDWL-GTSPLHLAAQYGH 46
Score = 44.3 bits (106), Expect = 1e-06
Identities = 6/55 (10%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFL 110
+ + ++ L+ + +++ ++S T ++ G++ + E L
Sbjct: 108 TEHNHQEVVELLIKY----GADVH------TQSKFCKTAFDISIDNGNEDLAEIL 152
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 80.4 bits (199), Expect = 8e-20
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
C G D ++ L N+E+N ++ LG T LH A++ G+ +V+ LL +G
Sbjct: 114 CHGGHKDIVEMLFTQP---NIELN------QQNKLGDTALHAAAWKGYADIVQLLLAKGA 164
Query: 116 DINAVNDAGDTPLHKAAFVG 135
+ N A
Sbjct: 165 RTDLRNIEKKLAFDMATNAA 184
Score = 80.0 bits (198), Expect = 1e-19
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ-G 114
+ G L +++ LD+ V +N G T L+ A + GHK +VE L Q
Sbjct: 81 AKRGNLSWLRECLDN----RVGVN------GLDKAGSTALYWACHGGHKDIVEMLFTQPN 130
Query: 115 VDINAVNDAGDTPLHKAAFVGR 136
+++N N GDT LH AA+ G
Sbjct: 131 IELNQQNKLGDTALHAAAWKGY 152
Score = 75.7 bits (187), Expect = 5e-18
Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 18/98 (18%)
Query: 56 CRNGQLDKIKQLLDH------------------CKENNVEINLSQKGESKSNLGWTPLHL 97
+ +L + + S ++ PLH
Sbjct: 20 LYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHE 79
Query: 98 ASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
A+ G+ S + LD V +N ++ AG T L+ A G
Sbjct: 80 AAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGG 117
Score = 68.4 bits (168), Expect = 3e-15
Identities = 8/80 (10%), Positives = 19/80 (23%), Gaps = 10/80 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
G D ++ LL +L ++ +A+ S+++
Sbjct: 148 AWKGYADIVQLLLAK----GARTDL------RNIEKKLAFDMATNAACASLLKKKQGTDA 197
Query: 116 DINAVNDAGDTPLHKAAFVG 135
N +
Sbjct: 198 VRTLSNAEDYLDDEDSDLEH 217
Score = 65.7 bits (161), Expect = 3e-14
Identities = 12/46 (26%), Positives = 16/46 (34%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
G + A Y + L + DI + D DT K GR
Sbjct: 12 GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGR 57
Score = 29.9 bits (68), Expect = 0.22
Identities = 3/48 (6%), Positives = 9/48 (18%), Gaps = 10/48 (20%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGH 103
+K+ + L + + + H
Sbjct: 181 TNAACASLLKKKQGT----DAVRTL------SNAEDYLDDEDSDLEHH 218
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 81.4 bits (202), Expect = 9e-20
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 11/83 (13%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
C N Q +K+LL+ ++N + +PLH + + L+D G
Sbjct: 198 CENQQRACVKKLLES----GADVN-------QGKGQDSPLHAVVRTASEELACLLMDFGA 246
Query: 116 DINAVNDAGDTPLHKAAFVGREV 138
D A N G P+
Sbjct: 247 DTQAKNAEGKRPVELVPPESPLA 269
Score = 78.3 bits (194), Expect = 1e-18
Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 10/81 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+G ++ L+ +N + +PLH A GH S V+ LL G
Sbjct: 67 AIHGHQLSLRNLISQ----GWAVN------IITADHVSPLHEACLGGHLSCVKILLKHGA 116
Query: 116 DINAVNDAGDTPLHKAAFVGR 136
+N V TPL A G
Sbjct: 117 QVNGVTADWHTPLFNACVSGS 137
Score = 77.1 bits (191), Expect = 3e-18
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
C G L +K LL H ++N + TPL A G V LL G
Sbjct: 100 CLGGHLSCVKILLKH----GAQVN------GVTADWHTPLFNACVSGSWDCVNLLLQHGA 149
Query: 116 DINAVNDAGDTPLHKAAFVG 135
+ +D +P+H+AA G
Sbjct: 150 SVQPESD-LASPIHEAARRG 168
Score = 77.1 bits (191), Expect = 4e-18
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R G ++ + L+ + I+ K + TPL+LA ++ V+ LL+ G
Sbjct: 165 ARRGHVECVNSLIAY----GGNID------HKISHLGTPLYLACENQQRACVKKLLESGA 214
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
D+N D+PLH E
Sbjct: 215 DVNQGKG-QDSPLHAVVRTASE 235
Score = 76.4 bits (189), Expect = 7e-18
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
C +G D + LL H + + +P+H A+ GH V L+ G
Sbjct: 133 CVSGSWDCVNLLLQH----GASVQ-------PESDLASPIHEAARRGHVECVNSLIAYGG 181
Query: 116 DINAVNDAGDTPLHKAAFVGR 136
+I+ TPL+ A +
Sbjct: 182 NIDHKISHLGTPLYLACENQQ 202
Score = 75.6 bits (187), Expect = 1e-17
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 21/101 (20%)
Query: 56 CRNGQLDKIKQLLD---------------------HCKENNVEINLSQKGESKSNLGWTP 94
+ L+ ++ LS + W+P
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSP 62
Query: 95 LHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
+H A+ GH+ + L+ QG +N + +PLH+A G
Sbjct: 63 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGG 103
Score = 48.3 bits (116), Expect = 1e-07
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 97 LASYFGHKSVVEFLLDQGVDINAVNDA-----GDTPLHKAAFVG 135
+ S H L+ +G + +++ G P F G
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPG 44
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 81.4 bits (202), Expect = 1e-19
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+ + LL + ++ +++LG T LHLA+ G S VE L G
Sbjct: 17 VIHQHEPFLDFLLGF-SAGHEYLD------LQNDLGQTALHLAAILGEASTVEKLYAAGA 69
Query: 116 DINAVNDAGDTPLHKAAFVG 135
+ G T LH A V
Sbjct: 70 GVLVAERGGHTALHLACRVR 89
Score = 78.0 bits (193), Expect = 1e-18
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+ + ++ L D ++N + + G TPLHLA SV+E LL G
Sbjct: 166 VIHKDAEMVRLLRDA----GADLN-----KPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 116 DINAVNDAGDTPLHKAAFVGR 136
D A G TPL A
Sbjct: 217 DPTARMYGGRTPLGSALLRPN 237
Score = 76.0 bits (188), Expect = 7e-18
Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 11/111 (9%)
Query: 28 SEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESK 87
+ + L+ + + + N + ++ + D +++ ++
Sbjct: 105 PRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDW----RLQLE------AE 154
Query: 88 SNLGWTPLHLASYFGHKSVVEFLLDQGVDINAV-NDAGDTPLHKAAFVGRE 137
+ G TPLH+A +V L D G D+N G TPLH A
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAA 205
Score = 75.7 bits (187), Expect = 1e-17
Identities = 10/77 (12%), Positives = 19/77 (24%), Gaps = 10/77 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
++ LL + ++ G TPL A + + L G
Sbjct: 200 VEAQAASVLELLLKA----GADPT------ARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Query: 116 DINAVNDAGDTPLHKAA 132
+P +
Sbjct: 250 PEPEDGGDKLSPCSSSG 266
Score = 66.0 bits (162), Expect = 4e-14
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVD---INAVNDAGDTPLHKAAFVGRE 137
G T LHLA H+ ++FLL ++ ND G T LH AA +G
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEA 58
Score = 64.5 bits (158), Expect = 2e-13
Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 4/85 (4%)
Query: 56 CRNGQLDKIKQLLDH---CKENNVEINLSQKGESKSNLGWTPLHL-ASYFGHKSVVEFLL 111
CR LL + + L+Q + + P + +
Sbjct: 86 CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDE 145
Query: 112 DQGVDINAVNDAGDTPLHKAAFVGR 136
D + + A N G TPLH A
Sbjct: 146 DWRLQLEAENYDGHTPLHVAVIHKD 170
Score = 61.8 bits (151), Expect = 2e-12
Identities = 10/77 (12%), Positives = 17/77 (22%), Gaps = 10/77 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
G+ +++L + G T LHLA + LL
Sbjct: 53 AILGEASTVEKLYAA----GAGVL------VAERGGHTALHLACRVRAHTCACVLLQPRP 102
Query: 116 DINAVNDAGDTPLHKAA 132
+
Sbjct: 103 SHPRDASDTYLTQSQDC 119
Score = 42.9 bits (102), Expect = 7e-06
Identities = 3/57 (5%), Positives = 8/57 (14%), Gaps = 10/57 (17%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLD 112
+ L H +P + + +
Sbjct: 233 LLRPNPILARLLRAH----GAPEP------EDGGDKLSPCSSSGSDSDSDNRDEGDE 279
Score = 29.4 bits (67), Expect = 0.27
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 117 INAVNDAGDTPLHKAAFVGRE 137
V + GDT LH A E
Sbjct: 2 FGYVTEDGDTALHLAVIHQHE 22
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 80.6 bits (200), Expect = 1e-19
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R G L + QL+ + + + G + +HLA+ FGH S+V +L+ +G
Sbjct: 84 TRQGHLSMVVQLMKY----GADPS------LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ 133
Query: 116 DINAVNDAGDTPLHKAAFVG 135
D++ ++ G TPL AA+
Sbjct: 134 DVDMMDQNGMTPLMWAAYRT 153
Score = 78.6 bits (195), Expect = 6e-19
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
N ++D +K + ++ + +L TPLH A+ GH S+V L+ G
Sbjct: 50 AINNRIDLVKYYISK----GAIVD-----QLGGDLNSTPLHWATRQGHLSMVVQLMKYGA 100
Query: 116 DINAVNDAGDTPLHKAAFVG 135
D + ++ G + +H AA G
Sbjct: 101 DPSLIDGEGCSCIHLAAQFG 120
Score = 77.9 bits (193), Expect = 9e-19
Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+ G ++ ++L++ ++ T LH A+ +V++ + +G
Sbjct: 17 TQYGIYERCRELVEA----GYDVR------QPDKENVTLLHWAAINNRIDLVKYYISKGA 66
Query: 116 DINAV-NDAGDTPLHKAAFVG 135
++ + D TPLH A G
Sbjct: 67 IVDQLGGDLNSTPLHWATRQG 87
Score = 73.2 bits (181), Expect = 6e-17
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Query: 57 RNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVD 116
R +D + LL NV +NL K T LH A G+ +V+ LL+ G +
Sbjct: 152 RTHSVDPTRLLLTF----NVSVNLGDKYH-----KNTALHWAVLAGNTTVISLLLEAGAN 202
Query: 117 INAVNDAGDTPLHKAAFVGRE 137
++A N G++ L A
Sbjct: 203 VDAQNIKGESALDLAKQRKNV 223
Score = 72.9 bits (180), Expect = 7e-17
Identities = 11/52 (21%), Positives = 19/52 (36%)
Query: 85 ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
+ + A+ +G L++ G D+ + T LH AA R
Sbjct: 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNR 54
Score = 70.9 bits (175), Expect = 5e-16
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 12/82 (14%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGH-KSVVEFLLDQG 114
+ G + L+ +++ G TPL A+Y H LL
Sbjct: 117 AQFGHTSIVAYLIAK----GQDVD------MMDQNGMTPLMWAAYRTHSVDPTRLLLTFN 166
Query: 115 VDINAVNDA-GDTPLHKAAFVG 135
V +N + +T LH A G
Sbjct: 167 VSVNLGDKYHKNTALHWAVLAG 188
Score = 55.1 bits (134), Expect = 3e-10
Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 10/66 (15%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
G I LL+ ++ +++ G + L LA + ++ L +
Sbjct: 185 VLAGNTTVISLLLEA----GANVD------AQNIKGESALDLAKQRKNVWMINHLQEARQ 234
Query: 116 DINAVN 121
N
Sbjct: 235 AKGYDN 240
Score = 30.1 bits (69), Expect = 0.19
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 117 INAVNDAGDTPLHKAAFVG 135
+ ++D + KA G
Sbjct: 2 MTHIDDYSTWDIVKATQYG 20
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 80.5 bits (200), Expect = 1e-19
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+ G + ++ LL + + + +N + + GWTP+ A+ + H +V+ LL +G
Sbjct: 85 AKKGHYEVVQYLLSNGQMD---VN------CQDDGGWTPMIWATEYKHVDLVKLLLSKGS 135
Query: 116 DINAVNDAGDTPLHKAAFVG 135
DIN ++ + LH AAF G
Sbjct: 136 DINIRDNEENICLHWAAFSG 155
Score = 79.8 bits (198), Expect = 2e-19
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+D +K LL +IN + N LH A++ G + E LL
Sbjct: 119 TEYKHVDLVKLLLSK----GSDIN------IRDNEENICLHWAAFSGCVDIAEILLAAKC 168
Query: 116 DINAVNDAGDTPLHKAAFVGR 136
D++AVN GD+PLH AA R
Sbjct: 169 DLHAVNIHGDSPLHIAARENR 189
Score = 79.0 bits (196), Expect = 3e-19
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 10/81 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+G +D + LL +++ + + G +PLH+A+ V L +
Sbjct: 152 AFSGCVDIAEILLAA----KCDLH------AVNIHGDSPLHIAARENRYDCVVLFLSRDS 201
Query: 116 DINAVNDAGDTPLHKAAFVGR 136
D+ N G+TPL A+ +
Sbjct: 202 DVTLKNKEGETPLQCASLNSQ 222
Score = 78.2 bits (194), Expect = 7e-19
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 10/80 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
G +D L+ I+ + S TPL A+ H V++L+ G
Sbjct: 19 AEAGHVDICHMLVQA----GANID------TCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68
Query: 116 DINAVNDAGDTPLHKAAFVG 135
++ + G T LH AA G
Sbjct: 69 LVDPKDAEGSTCLHLAAKKG 88
Score = 74.8 bits (185), Expect = 1e-17
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 75 NVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFV 134
++ + +PLH A+ GH + L+ G +I+ ++ TPL +AA
Sbjct: 1 HMNFK------MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAEN 54
Query: 135 G 135
Sbjct: 55 N 55
Score = 74.0 bits (183), Expect = 3e-17
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 11/82 (13%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG- 114
N L+ +K L+ ++ K G T LHLA+ GH VV++LL G
Sbjct: 52 AENNHLEAVKYLIKA----GALVD------PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ 101
Query: 115 VDINAVNDAGDTPLHKAAFVGR 136
+D+N +D G TP+ A
Sbjct: 102 MDVNCQDDGGWTPMIWATEYKH 123
Score = 52.0 bits (126), Expect = 4e-09
Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 10/61 (16%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R + D + L + ++ K+ G TPL AS +
Sbjct: 185 ARENRYDCVVLFLSR----DSDVT------LKNKEGETPLQCASLNSQVWSALQMSKALQ 234
Query: 116 D 116
D
Sbjct: 235 D 235
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 78.2 bits (194), Expect = 2e-19
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 53 LYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLD 112
G + ++++LL V + + + G T L + + G ++ LL
Sbjct: 7 SGAAARGDVQEVRRLLH---RELVHPD------ALNRFGKTALQVMMF-GSTAIALELLK 56
Query: 113 QGVDINAVNDAGDTPLHKAAFVGR 136
QG N + +G +P+H AA G
Sbjct: 57 QGASPNVQDTSGTSPVHDAARTGF 80
Score = 74.4 bits (184), Expect = 5e-18
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 11/82 (13%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R G LD +K L++H ++N G P+HLA GH +VV FL
Sbjct: 76 ARTGFLDTLKVLVEH----GADVN------VPDGTGALPIHLAVQEGHTAVVSFLA-AES 124
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
D++ + G TPL A G +
Sbjct: 125 DLHRRDARGLTPLELALQRGAQ 146
Score = 62.4 bits (153), Expect = 2e-13
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQ-GVDINAVNDAGDTPLHKAAF 133
L A+ G V LL + V +A+N G T L F
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF 45
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 80.0 bits (198), Expect = 2e-19
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
G+ D +++++ + + ++ G T LH A GH +V+FL+ GV
Sbjct: 45 SLEGEFDLVQRIIYE----VDDPS------LPNDEGITALHNAVCAGHTEIVKFLVQFGV 94
Query: 116 DINAVNDAGDTPLHKAAFVG 135
++NA + G TPLH AA
Sbjct: 95 NVNAADSDGWTPLHCAASCN 114
Score = 78.4 bits (194), Expect = 6e-19
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 11/80 (13%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R + + H + L L +S G +V+ ++ +
Sbjct: 13 KRTNLRKTGSERIAHGMRVKF-----------NPLPLALLLDSSLEGEFDLVQRIIYEVD 61
Query: 116 DINAVNDAGDTPLHKAAFVG 135
D + ND G T LH A G
Sbjct: 62 DPSLPNDEGITALHNAVCAG 81
Score = 66.1 bits (162), Expect = 2e-14
Identities = 6/46 (13%), Positives = 12/46 (26%), Gaps = 1/46 (2%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
G L + + G+ + N L ++ G
Sbjct: 5 GQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGE 49
Score = 65.3 bits (160), Expect = 6e-14
Identities = 7/77 (9%), Positives = 15/77 (19%), Gaps = 7/77 (9%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+ K L++ + G+ +FL
Sbjct: 111 ASCNNVQVCKFLVES----GAAVFAMTY---SDMQTAADKCEEMEEGYTQCSQFLYGVQE 163
Query: 116 DINAVNDAGDTPLHKAA 132
+ +N L
Sbjct: 164 KMGIMNKGVIYALWDYE 180
Score = 35.7 bits (83), Expect = 0.002
Identities = 8/84 (9%), Positives = 20/84 (23%), Gaps = 15/84 (17%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
G + L ++ + + L E + +G
Sbjct: 147 MEEGYTQCSQFLYGVQEKMGI----------MNKGVIYALWDYEPQNDD---ELPMKEGD 193
Query: 116 DINAVN--DAGDTPLHKAAFVGRE 137
+ ++ D + A +E
Sbjct: 194 CMTIIHREDEDEIEWWWARLNDKE 217
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 81.8 bits (203), Expect = 2e-19
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R G + K LL + ++N +K+ TPLH A+ GH ++V+ LL+
Sbjct: 55 ARAGHTEVAKYLLQN----KAKVN------AKAKDDQTPLHCAARIGHTNMVKLLLENNA 104
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
+ N AG TPLH AA G
Sbjct: 105 NPNLATTAGHTPLHIAAREGHV 126
Score = 81.8 bits (203), Expect = 2e-19
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+ Q++ + LL + N ++S G TPLHLA+ GH +V LL +
Sbjct: 220 AKQNQVEVARSLLQY----GGSAN------AESVQGVTPLHLAAQEGHAEMVALLLSKQA 269
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
+ N N +G TPLH A G
Sbjct: 270 NGNLGNKSGLTPLHLVAQEGHV 291
Score = 81.8 bits (203), Expect = 2e-19
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+ LD +K LL + S + G+TPLH+A+ V LL G
Sbjct: 187 VHHNNLDIVKLLLPR----GGSPH------SPAWNGYTPLHIAAKQNQVEVARSLLQYGG 236
Query: 116 DINAVNDAGDTPLHKAAFVG 135
NA + G TPLH AA G
Sbjct: 237 SANAESVQGVTPLHLAAQEG 256
Score = 81.8 bits (203), Expect = 2e-19
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+ G + L+ H V ++ + + +G+TPLH+AS++G+ +V+FLL
Sbjct: 286 AQEGHVPVADVLIKH----GVMVD------ATTRMGYTPLHVASHYGNIKLVKFLLQHQA 335
Query: 116 DINAVNDAGDTPLHKAAFVGR 136
D+NA G +PLH+AA G
Sbjct: 336 DVNAKTKLGYSPLHQAAQQGH 356
Score = 81.0 bits (201), Expect = 4e-19
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+ G + + LL N + G TPLHL + GH V + L+ GV
Sbjct: 253 AQEGHAEMVALLLSK----QANGN------LGNKSGLTPLHLVAQEGHVPVADVLIKHGV 302
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
++A G TPLH A+ G
Sbjct: 303 MVDATTRMGYTPLHVASHYGNI 324
Score = 81.0 bits (201), Expect = 4e-19
Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 23/103 (22%)
Query: 56 CRNGQLDKIKQLLDH------------------CKENNVEI--NLSQKG---ESKSNLGW 92
R G ++ + LL+ K V + L ++ + G
Sbjct: 121 AREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGL 180
Query: 93 TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
TPLH+A + + +V+ LL +G ++ G TPLH AA
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQN 223
Score = 79.8 bits (198), Expect = 1e-18
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
G + +K LL H ++N +K+ LG++PLH A+ GH +V LL G
Sbjct: 319 SHYGNIKLVKFLLQH----QADVN------AKTKLGYSPLHQAAQQGHTDIVTLLLKNGA 368
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
N V+ G TPL A +G
Sbjct: 369 SPNEVSSDGTTPLAIAKRLGYI 390
Score = 79.8 bits (198), Expect = 1e-18
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R G + +K LL++ N N + G TPLH+A+ GH V LL++
Sbjct: 88 ARIGHTNMVKLLLEN----NANPN------LATTAGHTPLHIAAREGHVETVLALLEKEA 137
Query: 116 DINAVNDAGDTPLHKAAFVGR 136
+ G TPLH AA G+
Sbjct: 138 SQACMTKKGFTPLHVAAKYGK 158
Score = 77.9 bits (193), Expect = 5e-18
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
G L +K LL N + TPLH+A+ GH V ++LL
Sbjct: 22 SFMGHLPIVKNLLQR----GASPN------VSNVKVETPLHMAARAGHTEVAKYLLQNKA 71
Query: 116 DINAVNDAGDTPLHKAAFVG 135
+NA TPLH AA +G
Sbjct: 72 KVNAKAKDDQTPLHCAARIG 91
Score = 72.9 bits (180), Expect = 3e-16
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 85 ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
G TPLH+AS+ GH +V+ LL +G N N +TPLH AA G
Sbjct: 8 GGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAG 58
Score = 58.7 bits (143), Expect = 3e-11
Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 13/79 (16%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFL---LD 112
+ G D + LL + N S+ G TPL +A G+ SV + L D
Sbjct: 352 AQQGHTDIVTLLLKN----GASPN------EVSSDGTTPLAIAKRLGYISVTDVLKVVTD 401
Query: 113 QGVDINAVNDAGDTPLHKA 131
+ + + +
Sbjct: 402 ETSFVLVSDKHRMSFPETV 420
Score = 36.3 bits (85), Expect = 0.001
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 113 QGVDINAVNDAGDTPLHKAAFVGR 136
G+ ++G TPLH A+F+G
Sbjct: 3 PGISGGGGGESGLTPLHVASFMGH 26
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 81.1 bits (201), Expect = 3e-19
Identities = 11/81 (13%), Positives = 30/81 (37%), Gaps = 7/81 (8%)
Query: 56 CRNGQLDKIKQLLDHCKENN-VEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG 114
+ + ++D + + ++ + G + LH A + V ++ G
Sbjct: 181 MEFRNREALDLMMDTVPSKSSLRLD------YANKQGNSHLHWAILINWEDVAMRFVEMG 234
Query: 115 VDINAVNDAGDTPLHKAAFVG 135
+D+N ++ PL+ +
Sbjct: 235 IDVNMEDNEHTVPLYLSVRAA 255
Score = 78.8 bits (195), Expect = 2e-18
Identities = 10/85 (11%), Positives = 25/85 (29%), Gaps = 3/85 (3%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGE---SKSNLGWTPLHLASYFGHKSVVEFLLD 112
R + K+LL ++ G + + A+ + V++ L +
Sbjct: 252 VRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQE 311
Query: 113 QGVDINAVNDAGDTPLHKAAFVGRE 137
+ ++ + G K
Sbjct: 312 KLDEVVRSLNTGAGGAVKRKKKAAP 336
Score = 75.3 bits (186), Expect = 4e-17
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 12/81 (14%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R GQ D++++L++ V ++ G T LHLA FG ++L G
Sbjct: 28 ARKGQTDEVRRLIET----GVSPT------IQNRFGCTALHLACKFGCVDTAKYLASVGE 77
Query: 116 DINAVNDAGDTPLHKAAFVGR 136
+ + G P+H A +
Sbjct: 78 VHSLWH--GQKPIHLAVMANK 96
Score = 74.1 bits (183), Expect = 9e-17
Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 21/97 (21%)
Query: 56 CRNGQLDKIKQLLDHCKENN---------------VEINLSQKGESKSNLGWTPLHLASY 100
+ D + L++ KE EI K G T LH
Sbjct: 92 VMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGS----HVKHCKGQTALHWCVG 147
Query: 101 FG--HKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
G + +++ L+ G A + A +TPL +A
Sbjct: 148 LGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFR 184
Score = 71.8 bits (177), Expect = 5e-16
Identities = 14/51 (27%), Positives = 20/51 (39%)
Query: 85 ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
+ +H+A+ G V L++ GV N G T LH A G
Sbjct: 14 IKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFG 64
Score = 69.5 bits (171), Expect = 4e-15
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 15/85 (17%)
Query: 58 NGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLD----- 112
L+ IK L+ +K TPL A F ++ ++ ++D
Sbjct: 150 PEYLEMIKILVQL----GASPT------AKDKADETPLMRAMEFRNREALDLMMDTVPSK 199
Query: 113 QGVDINAVNDAGDTPLHKAAFVGRE 137
+ ++ N G++ LH A + E
Sbjct: 200 SSLRLDYANKQGNSHLHWAILINWE 224
Score = 67.6 bits (166), Expect = 2e-14
Identities = 6/76 (7%), Positives = 17/76 (22%), Gaps = 10/76 (13%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+ + ++ L + E+ N G +V L
Sbjct: 298 ADPSKQEVLQLLQEK----LDEVV------RSLNTGAGGAVKRKKKAAPAVKRMKLAPSA 347
Query: 116 DINAVNDAGDTPLHKA 131
+ + + +
Sbjct: 348 PVRTRSRSRARSSAVS 363
Score = 64.1 bits (157), Expect = 3e-13
Identities = 11/95 (11%), Positives = 27/95 (28%), Gaps = 23/95 (24%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ-- 113
D + ++ +++N + N PL+L+ + + LL +
Sbjct: 219 ILINWEDVAMRFVEM----GIDVN------MEDNEHTVPLYLSVRAAMVLLTKELLQKTD 268
Query: 114 -----------GVDINAVNDAGDTPLHKAAFVGRE 137
G + + AA ++
Sbjct: 269 VFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQ 303
Score = 33.3 bits (77), Expect = 0.018
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 102 GHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
G S+ +F ++ +D +H AA G+
Sbjct: 1 GPGSMTDF---PKLNRIKSDDENMEKIHVAARKGQ 32
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 76.1 bits (188), Expect = 3e-19
Identities = 18/82 (21%), Positives = 25/82 (30%), Gaps = 13/82 (15%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+ L+ G + L A+ G V L+ G
Sbjct: 2 SSHHHHHHSSGLVPR-------------GSHMGSDLGKKLLEAARAGQDDEVRILMANGA 48
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
D+ A + G TPLH AA G
Sbjct: 49 DVAAKDKNGSTPLHLAARNGHL 70
Score = 72.2 bits (178), Expect = 9e-18
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R GQ D+++ L+ + ++ +K G TPLHLA+ GH VV+ LL+ G
Sbjct: 32 ARAGQDDEVRILMAN----GADVA------AKDKNGSTPLHLAARNGHLEVVKLLLEAGA 81
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
D+ A + G T + G E
Sbjct: 82 DVXAQDKFGKTAFDISIDNGNE 103
Score = 49.5 bits (119), Expect = 7e-09
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 98 ASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
S H L+ +G + + L +AA G++
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQD 37
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 79.8 bits (198), Expect = 3e-19
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ-G 114
G++ +K L N+ + E G T L A+ GH V++ LLD+ G
Sbjct: 113 AVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG 172
Query: 115 VDINAVNDAGDTPLHKAAFVGRE 137
D+NA ++ G L A +
Sbjct: 173 ADVNACDNMGRNALIHALLSSDD 195
Score = 79.4 bits (197), Expect = 5e-19
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+N +D ++QLL+ +N + GWTPLH A + +VE LL G
Sbjct: 13 VQNEDVDLVQQLLEG----GANVN-----FQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63
Query: 116 DINAVNDAGDTPLHKAAFVG 135
D G TP AA G
Sbjct: 64 DPVLRKKNGATPFLLAAIAG 83
Score = 78.3 bits (194), Expect = 2e-18
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+ + D ++ LL H + + G TP LA+ G +++ L +G
Sbjct: 47 VQMSREDIVELLLRH----GADPV------LRKKNGATPFLLAAIAGSVKLLKLFLSKGA 96
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
D+N + G T +AA G+
Sbjct: 97 DVNECDFYGFTAFMEAAVYGKV 118
Score = 73.3 bits (181), Expect = 1e-16
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 13/84 (15%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGH----KSVVEFLL 111
G ++ +K LLD ++N + N+G L A +++ LL
Sbjct: 156 AEKGHVEVLKILLDE---MGADVN------ACDNMGRNALIHALLSSDDSDVEAITHLLL 206
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
D G D+N + G TPL A
Sbjct: 207 DHGADVNVRGERGKTPLILAVEKK 230
Score = 72.1 bits (178), Expect = 3e-16
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 53 LYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLD 112
L + + LLDH ++N + G TPL LA H +V+ LL+
Sbjct: 191 LSSDDSDVEAITHLLLDH----GADVN------VRGERGKTPLILAVEKKHLGLVQRLLE 240
Query: 113 Q-GVDINAVNDAGDTPLHKAAFVGRE 137
Q ++IN + G T L A + +
Sbjct: 241 QEHIEINDTDSDGKTALLLAVELKLK 266
Score = 69.4 bits (171), Expect = 2e-15
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 20/90 (22%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
G + +K L ++N G+T A+ +G ++FL +G
Sbjct: 80 AIAGSVKLLKLFLSK----GADVN------ECDFYGFTAFMEAAVYGKVKALKFLYKRGA 129
Query: 116 DINA----------VNDAGDTPLHKAAFVG 135
++N + G T L AA G
Sbjct: 130 NVNLRRKTKEDQERLRKGGATALMDAAEKG 159
Score = 69.0 bits (170), Expect = 4e-15
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAV-NDAGDTPLHKAAFVGRE 137
L A +V+ LL+ G ++N + G TPLH A + RE
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRE 52
Score = 63.6 bits (156), Expect = 3e-13
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
L +++LL+ ++EIN + G T L LA K + E L +G
Sbjct: 227 VEKKHLGLVQRLLEQE---HIEIN------DTDSDGKTALLLAVELKLKKIAELLCKRGA 277
Query: 116 DINAVN 121
+ +
Sbjct: 278 STDCGD 283
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 77.9 bits (193), Expect = 3e-19
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
G ++ L + +++ G T LH+A+ + VVE L++ G
Sbjct: 84 AGLGSDKCVRLLAEA----GADLD-----HRDMRGGLTALHMAAGYVRPEVVEALVELGA 134
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
DI ++ G T L A + +
Sbjct: 135 DIEVEDERGLTALELAREILKT 156
Score = 72.5 bits (179), Expect = 3e-17
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 12/83 (14%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R + QLL+ +++ + G T L + G V L + G
Sbjct: 52 ARKADEQALSQLLEDR-----DVD------AVDENGRTALLFVAGLGSDKCVRLLAEAGA 100
Query: 116 DINAVND-AGDTPLHKAAFVGRE 137
D++ + G T LH AA R
Sbjct: 101 DLDHRDMRGGLTALHMAAGYVRP 123
Score = 70.6 bits (174), Expect = 2e-16
Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 14/86 (16%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
+L ++G ++ + TP A+ + + LL
Sbjct: 18 YLIEWKDGHSPSWVPSSYI----AADVV---------SEYETPWWTAARKADEQALSQLL 64
Query: 112 DQGVDINAVNDAGDTPLHKAAFVGRE 137
+ D++AV++ G T L A +G +
Sbjct: 65 -EDRDVDAVDENGRTALLFVAGLGSD 89
Score = 57.5 bits (140), Expect = 2e-11
Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 3/51 (5%)
Query: 87 KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
+ G + GH D+ + +TP AA E
Sbjct: 10 TAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADE 57
Score = 53.3 bits (129), Expect = 9e-10
Identities = 9/64 (14%), Positives = 19/64 (29%), Gaps = 10/64 (15%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+ + ++ L++ +I + G T L LA + + G
Sbjct: 118 AGYVRPEVVEALVEL----GADIE------VEDERGLTALELAREILKTTPKGNPMQFGR 167
Query: 116 DINA 119
I
Sbjct: 168 RIGL 171
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 76.7 bits (190), Expect = 4e-19
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 10/81 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R GQ D+++ L+ + ++N +K G TPL+LA+ GH +VE LL G
Sbjct: 22 ARAGQDDEVRILMAN----GADVN------AKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71
Query: 116 DINAVNDAGDTPLHKAAFVGR 136
D+NAV+ G TPLH AAF+G
Sbjct: 72 DVNAVDAIGFTPLHLAAFIGH 92
Score = 74.0 bits (183), Expect = 3e-18
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+G L+ ++ LL + ++N + +G+TPLHLA++ GH + E LL G
Sbjct: 55 TAHGHLEIVEVLLKN----GADVN------AVDAIGFTPLHLAAFIGHLEIAEVLLKHGA 104
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
D+NA + G T + G E
Sbjct: 105 DVNAQDKFGKTAFDISIGNGNE 126
Score = 67.8 bits (167), Expect = 1e-15
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
L A+ G V L+ G D+NA ++ G TPL+ A G
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGH 59
Score = 43.1 bits (103), Expect = 2e-06
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 10/56 (17%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
G L+ + LL H ++N ++ G T ++ G++ + E L
Sbjct: 88 AFIGHLEIAEVLLKH----GADVN------AQDKFGKTAFDISIGNGNEDLAEILQ 133
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 77.8 bits (193), Expect = 4e-19
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
C G + I +L+++ ++ K G T L A + E LL +G
Sbjct: 43 CMLGMENAIDKLVEN----FDKLE------DKDIEGSTALIWAVKNNRLGIAEKLLSKGS 92
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
++N + +G TPL + G
Sbjct: 93 NVNTKDFSGKTPLMWSIIFGYS 114
Score = 77.0 bits (191), Expect = 1e-18
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+N +L ++LL +N +K G TPL + FG+ + FLL+ G
Sbjct: 76 VKNNRLGIAEKLLSK----GSNVN------TKDFSGKTPLMWSIIFGYSEMSYFLLEHGA 125
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
++N N G+TPL A+ GR
Sbjct: 126 NVNDRNLEGETPLIVASKYGRS 147
Score = 75.9 bits (188), Expect = 2e-18
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
G + LL+H +N ++ G TPL +AS +G +V+ LL+ G
Sbjct: 109 IIFGYSEMSYFLLEH----GANVN------DRNLEGETPLIVASKYGRSEIVKKLLELGA 158
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
DI+A + G T A GR+
Sbjct: 159 DISARDLTGLTAEASARIFGRQ 180
Score = 75.5 bits (187), Expect = 3e-18
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 73 ENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
E ++ NL + + TPL +A G ++ ++ L++ + + G T L A
Sbjct: 17 EKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAV 76
Query: 133 FVGRE 137
R
Sbjct: 77 KNNRL 81
Score = 48.5 bits (117), Expect = 5e-08
Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 6/53 (11%)
Query: 84 GESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
G G + ++FL N + TPL A +G
Sbjct: 1 GSHMDKNGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGM 47
Score = 46.2 bits (111), Expect = 4e-07
Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLD 112
+ G+ + +K+LL+ +I+ ++ G T A FG + V++ +
Sbjct: 142 SKYGRSEIVKKLLEL----GADIS------ARDLTGLTAEASARIFGRQEVIKIFTE 188
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 79.4 bits (197), Expect = 4e-19
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 11/77 (14%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
C N Q +K+LL+ ++N + +PLH + + + L+D G
Sbjct: 142 CENQQRACVKKLLES----GADVN-------QGKGQDSPLHAVARTASEELACLLMDFGA 190
Query: 116 DINAVNDAGDTPLHKAA 132
D A N G P+
Sbjct: 191 DTQAKNAEGKRPVELVP 207
Score = 79.0 bits (196), Expect = 5e-19
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 10/82 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+G ++ L+ +N + +PLH A GH S V+ LL G
Sbjct: 11 AIHGHQLSLRNLISQ----GWAVN------IITADHVSPLHEACLGGHLSCVKILLKHGA 60
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
+N V TPL A G
Sbjct: 61 QVNGVTADWHTPLFNACVSGSW 82
Score = 77.9 bits (193), Expect = 2e-18
Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 23/104 (22%)
Query: 56 CRNGQLDKIKQLLDH-----------------CKENNVEI--NLSQKG---ESKSNLGWT 93
C +G D + LL H + +VE +L G + K + T
Sbjct: 77 CVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGT 136
Query: 94 PLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
PL+LA ++ V+ LL+ G D+N D+PLH A E
Sbjct: 137 PLYLACENQQRACVKKLLESGADVNQGKG-QDSPLHAVARTASE 179
Score = 76.7 bits (190), Expect = 4e-18
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
C G L +K LL H ++N + TPL A G V LL G
Sbjct: 44 CLGGHLSCVKILLKH----GAQVN------GVTADWHTPLFNACVSGSWDCVNLLLQHGA 93
Query: 116 DINAVNDAGDTPLHKAAFVG 135
+ +D +P+H+AA G
Sbjct: 94 SVQPESD-LASPIHEAARRG 112
Score = 72.5 bits (179), Expect = 1e-16
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
W+P+H A+ GH+ + L+ QG +N + +PLH+A G
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHL 49
Score = 68.2 bits (168), Expect = 5e-15
Identities = 8/82 (9%), Positives = 20/82 (24%), Gaps = 12/82 (14%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R + L+D + +K+ G P+ L + + L++
Sbjct: 174 ARTASEELACLLMDF----GADTQ------AKNAEGKRPVELVPPESP--LAQLFLEREG 221
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
+ +
Sbjct: 222 PPSLMQLCRLRIRKCFGIQQHH 243
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 77.0 bits (191), Expect = 5e-19
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 53 LYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLD 112
L + G + ++LL + K G+ +H A+ G ++ LL+
Sbjct: 42 LQVMKLGNPEIARRLLLR----GANPD------LKDRTGFAVIHDAARAGFLDTLQTLLE 91
Query: 113 QGVDINAVNDAGDTPLHKAAFVGR 136
D+N ++ G+ PLH AA G
Sbjct: 92 FQADVNIEDNEGNLPLHLAAKEGH 115
Score = 76.7 bits (190), Expect = 6e-19
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
G L+++ LL + NV +N +++ G T L + G+ + LL +G
Sbjct: 13 AARGDLEQLTSLLQN----NVNVN------AQNGFGRTALQVMKL-GNPEIARRLLLRGA 61
Query: 116 DINAVNDAGDTPLHKAAFVGR 136
+ + + G +H AA G
Sbjct: 62 NPDLKDRTGFAVIHDAARAGF 82
Score = 73.6 bits (182), Expect = 9e-18
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 57 RNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG-V 115
R G LD ++ LL+ ++N + N G PLHLA+ GH VVEFL+
Sbjct: 79 RAGFLDTLQTLLEF----QADVN------IEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
++ N GDT A GR
Sbjct: 129 NVGHRNHKGDTACDLARLYGRN 150
Score = 69.7 bits (172), Expect = 3e-16
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 88 SNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAF 133
+ L A+ G + LL V++NA N G T L
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL 47
Score = 51.2 bits (124), Expect = 3e-09
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 9/59 (15%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG 114
+ G L ++ L+ H N + +++ G T LA +G VV + G
Sbjct: 111 AKEGHLRVVEFLVKHTASN---VG------HRNHKGDTACDLARLYGRNEVVSLMQANG 160
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 78.4 bits (194), Expect = 6e-19
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
C G L + L C ++ L ++ + G T LHLAS G+ +VE L+ G
Sbjct: 86 CEQGCLASVGVLTQSCTTPHLHSIL----KATNYNGHTCLHLASIHGYLGIVELLVSLGA 141
Query: 116 DINAVNDA-GDTPLHKAAFVGR 136
D+NA G T LH A +
Sbjct: 142 DVNAQEPCNGRTALHLAVDLQN 163
Score = 76.4 bits (189), Expect = 4e-18
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 54 YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ 113
+ + ++ I+Q+ +N ++NL TPLHLA + E LL
Sbjct: 18 HEEKALTMEVIRQVKGD----LAFLN------FQNNLQQTPLHLAVITNQPEIAEALLGA 67
Query: 114 GVDINAVNDAGDTPLHKAAFVG 135
G D + G+TPLH A G
Sbjct: 68 GCDPELRDFRGNTPLHLACEQG 89
Score = 71.8 bits (177), Expect = 2e-16
Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 9/80 (11%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+G L ++ L+ ++N + G T LHLA + +V LL G
Sbjct: 125 SIHGYLGIVELLVSL----GADVNAQEPCN-----GRTALHLAVDLQNPDLVSLLLKCGA 175
Query: 116 DINAVNDAGDTPLHKAAFVG 135
D+N V G +P
Sbjct: 176 DVNRVTYQGYSPYQLTWGRP 195
Score = 68.0 bits (167), Expect = 6e-15
Identities = 22/87 (25%), Positives = 29/87 (33%), Gaps = 16/87 (18%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
Q + + LL + L + G TPLHLA G + V L
Sbjct: 53 VITNQPEIAEALLGA----GCDPEL------RDFRGNTPLHLACEQGCLASVGVLTQSCT 102
Query: 116 D------INAVNDAGDTPLHKAAFVGR 136
+ A N G T LH A+ G
Sbjct: 103 TPHLHSILKATNYNGHTCLHLASIHGY 129
Score = 64.5 bits (158), Expect = 1e-13
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 85 ESKSNLGWTPLHLASYFGHKS----VVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
+ + G + LHLA K+ V+ + +N N+ TPLH A
Sbjct: 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITN 56
Score = 62.2 bits (152), Expect = 6e-13
Identities = 8/77 (10%), Positives = 20/77 (25%), Gaps = 10/77 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
D + LL ++N + G++P L + + L +
Sbjct: 159 VDLQNPDLVSLLLKC----GADVN------RVTYQGYSPYQLTWGRPSTRIQQQLGQLTL 208
Query: 116 DINAVNDAGDTPLHKAA 132
+ + +
Sbjct: 209 ENLQMLPESEDEESYDT 225
Score = 25.6 bits (57), Expect = 6.0
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 119 AVNDAGDTPLHKAAFVGRE 137
+ + GD+ LH A +
Sbjct: 3 QLTEDGDSFLHLAIIHEEK 21
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 77.5 bits (192), Expect = 7e-19
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+ + L D +++ G TPL++A + + + L+D+G
Sbjct: 14 NQRDTKKVKEILQDT----TYQVD------EVDTEGNTPLNIAVHNNDIEIAKALIDRGA 63
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
DIN N D+P A GR
Sbjct: 64 DINLQNSISDSPYLYAGAQGRT 85
Score = 75.2 bits (186), Expect = 6e-18
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 10/81 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG- 114
G+ + + +L H + +N + G L A+ GH V+ LL+ G
Sbjct: 80 GAQGRTEILAYMLKHATPD---LN------KHNRYGGNALIPAAEKGHIDNVKLLLEDGR 130
Query: 115 VDINAVNDAGDTPLHKAAFVG 135
DI+ ND G T L +A +
Sbjct: 131 EDIDFQNDFGYTALIEAVGLR 151
Score = 73.3 bits (181), Expect = 3e-17
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG- 114
N ++ K L+D +IN ++++ +P A G ++ ++L
Sbjct: 47 VHNNDIEIAKALIDR----GADIN------LQNSISDSPYLYAGAQGRTEILAYMLKHAT 96
Query: 115 VDINAVNDAGDTPLHKAAFVG 135
D+N N G L AA G
Sbjct: 97 PDLNKHNRYGGNALIPAAEKG 117
Score = 73.3 bits (181), Expect = 3e-17
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 14/87 (16%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYF-----GHKSVVEFL 110
G +D +K LL+ +E+ I+ +++ G+T L A ++ +V+ L
Sbjct: 114 AEKGHIDNVKLLLEDGRED---ID------FQNDFGYTALIEAVGLREGNQLYQDIVKLL 164
Query: 111 LDQGVDINAVNDAGDTPLHKAAFVGRE 137
++ G D + +++G T + A G
Sbjct: 165 MENGADQSIKDNSGRTAMDYANQKGYT 191
Score = 70.9 bits (175), Expect = 2e-16
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 87 KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
K+ L A+ K V E L D ++ V+ G+TPL+ A
Sbjct: 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDI 52
Score = 45.9 bits (110), Expect = 5e-07
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 10/60 (16%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L D +K L+++ + ++ K N G T + A+ G+ + + L
Sbjct: 149 GLREGNQLYQDIVKLLMEN----GADQSI------KDNSGRTAMDYANQKGYTEISKILA 198
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 79.1 bits (196), Expect = 8e-19
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
C + +D +K L+++ IN N GW PLH A+ G+ + E+L+ QG
Sbjct: 81 CIDDNVDMVKFLVEN----GANIN------QPDNEGWIPLHAAASCGYLDIAEYLISQGA 130
Query: 116 DINAVNDAGDTPLHKAAFVG 135
+ AVN GDTPL A
Sbjct: 131 HVGAVNSEGDTPLDIAEEEA 150
Score = 78.7 bits (195), Expect = 9e-19
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
FL C +G +++ +LL+ +IN + G T LH A + +V+FL+
Sbjct: 44 FLAACSSGDTEEVLRLLER----GADIN------YANVDGLTALHQACIDDNVDMVKFLV 93
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
+ G +IN ++ G PLH AA G
Sbjct: 94 ENGANINQPDNEGWIPLHAAASCG 117
Score = 74.5 bits (184), Expect = 3e-17
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
G + +K L+ ++N K GWTPLH A+++G + L++
Sbjct: 207 AAKGYTEVLKLLIQA----RYDVN------IKDYDGWTPLHAAAHWGKEEACRILVENLC 256
Query: 116 DINAVNDAGDTPLHKAA 132
D+ AVN G T A
Sbjct: 257 DMEAVNKVGQTAFDVAD 273
Score = 73.7 bits (182), Expect = 7e-17
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 54 YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ 113
R D + L ++ + G T LH+A+ G+ V++ L+
Sbjct: 172 EEERIMLRDARQWLNSG----HINDV------RHAKSGGTALHVAAAKGYTEVLKLLIQA 221
Query: 114 GVDINAVNDAGDTPLHKAAFVGR 136
D+N + G TPLH AA G+
Sbjct: 222 RYDVNIKDYDGWTPLHAAAHWGK 244
Score = 59.1 bits (144), Expect = 2e-11
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 8/72 (11%)
Query: 68 LDHCKENN----VEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDA 123
LD +E ++ ++++G + ++L ++ +
Sbjct: 143 LDIAEEEAMEELLQNEVNRQG----VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS 198
Query: 124 GDTPLHKAAFVG 135
G T LH AA G
Sbjct: 199 GGTALHVAAAKG 210
Score = 47.5 bits (114), Expect = 2e-07
Identities = 7/64 (10%), Positives = 22/64 (34%), Gaps = 10/64 (15%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
G+ + + L+++ ++ + + +G T +A + E Q +
Sbjct: 240 AHWGKEEACRILVEN----LCDME------AVNKVGQTAFDVADEDILGYLEELQKKQNL 289
Query: 116 DINA 119
+
Sbjct: 290 LHSE 293
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 79.1 bits (196), Expect = 1e-18
Identities = 30/136 (22%), Positives = 46/136 (33%), Gaps = 29/136 (21%)
Query: 31 ETPNSLSAELNQLSVKEI---HELFLYNCRNGQLDKIKQLLDHCKENNVEIN-------- 79
++ ++ L R L K+K+ L N +
Sbjct: 158 KSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHC 217
Query: 80 ---------------LSQKG---ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVN 121
L +KG K+ TPLH+A+ H V+E L G +NA++
Sbjct: 218 AVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALD 277
Query: 122 DAGDTPLHKAAFVGRE 137
G T LH+AA G
Sbjct: 278 SLGQTALHRAALAGHL 293
Score = 78.7 bits (195), Expect = 2e-18
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 53 LYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLD 112
L R+G +K+ LL NV + + TPLHLA+ + +V+ LL
Sbjct: 29 LEAARSGNEEKLMALLT---PLNVNCH------ASDGRKSTPLHLAAGYNRVRIVQLLLQ 79
Query: 113 QGVDINAVNDAGDTPLHKAAFVG 135
G D++A + G PLH A G
Sbjct: 80 HGADVHAKDKGGLVPLHNACSYG 102
Score = 77.9 bits (193), Expect = 3e-18
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 10/80 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
C G + + LL H +N + +TPLH A+ V LL G
Sbjct: 99 CSYGHYEVTELLLKH----GACVN------AMDLWQFTPLHEAASKNRVEVCSLLLSHGA 148
Query: 116 DINAVNDAGDTPLHKAAFVG 135
D VN G + + A
Sbjct: 149 DPTLVNCHGKSAVDMAPTPE 168
Score = 76.8 bits (190), Expect = 1e-17
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
++ ++ LL H +++ +K G PLH A +GH V E LL G
Sbjct: 66 AGYNRVRIVQLLLQH----GADVH------AKDKGGLVPLHNACSYGHYEVTELLLKHGA 115
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
+NA++ TPLH+AA R
Sbjct: 116 CVNAMDLWQFTPLHEAASKNRV 137
Score = 75.2 bits (186), Expect = 3e-17
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
D ++ L H ++N + +LG T LH A+ GH LL G
Sbjct: 255 AERAHNDVMEVLHKH----GAKMN------ALDSLGQTALHRAALAGHLQTCRLLLSYGS 304
Query: 116 DINAVNDAGDTPLHKAA 132
D + ++ G T
Sbjct: 305 DPSIISLQGFTAAQMGN 321
Score = 61.0 bits (149), Expect = 4e-12
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 87 KSNLGWTPLHLASYFGH-KSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
L A+ G+ + ++ L V+ +A + TPLH AA R
Sbjct: 20 TGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNR 70
Score = 58.7 bits (143), Expect = 2e-11
Identities = 11/101 (10%), Positives = 25/101 (24%), Gaps = 31/101 (30%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEF------ 109
+++ LL H + L + G + + +A + + +
Sbjct: 132 ASKNRVEVCSLLLSH----GADPTL------VNCHGKSAVDMAPTPELRERLTYEFKGHS 181
Query: 110 ---------------LLDQGVDINAVNDAGDTPLHKAAFVG 135
L + + +T LH A
Sbjct: 182 LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASL 222
Score = 54.0 bits (131), Expect = 1e-09
Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 17/80 (21%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
G L + LL + + + S G+T + + V+ +L +
Sbjct: 288 ALAGHLQTCRLLLSY----GSDPS------IISLQGFTAAQMGN-----EAVQQILSEST 332
Query: 116 DINAVNDAGDTPLHKAAFVG 135
+ + D L +A+ G
Sbjct: 333 PMRTSDV--DYRLLEASKAG 350
Score = 35.2 bits (82), Expect = 0.003
Identities = 8/47 (17%), Positives = 11/47 (23%), Gaps = 13/47 (27%)
Query: 89 NLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
G + L L D + L +AA G
Sbjct: 2 EFGKSALDL-------------ADPSAKAVLTGEYKKDELLEAARSG 35
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 77.9 bits (193), Expect = 1e-18
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+ L+ + + ++ ++ + G TPL LA+ + ++E L++
Sbjct: 98 VSADAQGVFQILIRNRATD---LD------ARMHDGTTPLILAARLAVEGMLEDLINSHA 148
Query: 116 DINAVNDAGDTPLHKAAFVGR 136
D+NAV+D G + LH AA V
Sbjct: 149 DVNAVDDLGKSALHWAAAVNN 169
Score = 75.6 bits (187), Expect = 9e-18
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 10/81 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R ++ L++ + ++N + +LG + LH A+ + LL G
Sbjct: 132 ARLAVEGMLEDLINS----HADVN------AVDDLGKSALHWAAAVNNVDAAVVLLKNGA 181
Query: 116 DINAVNDAGDTPLHKAAFVGR 136
+ + N+ +TPL AA G
Sbjct: 182 NKDMQNNREETPLFLAAREGS 202
Score = 72.9 bits (180), Expect = 1e-16
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 10/77 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+D LL + + ++N TPL LA+ G + LLD
Sbjct: 165 AAVNNVDAAVVLLKN----GANKD------MQNNREETPLFLAAREGSYETAKVLLDHFA 214
Query: 116 DINAVNDAGDTPLHKAA 132
+ + + P A
Sbjct: 215 NRDITDHMDRLPRDIAQ 231
Score = 72.1 bits (178), Expect = 2e-16
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG- 114
R + D K+LL+ + + N + N+G TPLH A + V + L+
Sbjct: 65 ARYSRSDAAKRLLEA----SADAN------IQDNMGRTPLHAAVSADAQGVFQILIRNRA 114
Query: 115 VDINAVNDAGDTPLHKAAFVGRE 137
D++A G TPL AA + E
Sbjct: 115 TDLDARMHDGTTPLILAARLAVE 137
Score = 71.3 bits (176), Expect = 3e-16
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 87 KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
G T LHLA+ + + LL+ D N ++ G TPLH A
Sbjct: 53 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADA 102
Score = 60.9 bits (149), Expect = 2e-12
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 20/75 (26%)
Query: 76 VEINLSQKGESKSNLGWTPLHLASYFG-------------HKSVVEFLLDQGVDI-NAVN 121
+++N + G+TPL +AS G +V+ + QG + N +
Sbjct: 1 MDVN------VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTD 54
Query: 122 DAGDTPLHKAAFVGR 136
G+T LH AA R
Sbjct: 55 RTGETALHLAARYSR 69
Score = 55.2 bits (134), Expect = 3e-10
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 10/66 (15%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R G + K LLDH + ++ P +A H +V L +
Sbjct: 198 AREGSYETAKVLLDH----FANRD------ITDHMDRLPRDIAQERMHHDIVRLLDLEHH 247
Query: 116 DINAVN 121
+ +
Sbjct: 248 HHHHHH 253
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 77.3 bits (191), Expect = 2e-18
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
G+L+ ++Q + + + + G T LH A + S+V+FL+ G
Sbjct: 29 ALTGELEVVQQAVKE----MNDPS------QPNEEGITALHNAICGANYSIVDFLITAGA 78
Query: 116 DINAVNDAGDTPLHKAAFVG 135
++N+ + G TPLH AA
Sbjct: 79 NVNSPDSHGWTPLHCAASCN 98
Score = 67.3 bits (165), Expect = 1e-14
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
L A+ G VV+ + + D + N+ G T LH A
Sbjct: 21 PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGA 65
Score = 60.0 bits (146), Expect = 5e-12
Identities = 10/79 (12%), Positives = 19/79 (24%), Gaps = 11/79 (13%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYF--GHKSVVEFLLDQ 113
L+ H I + + G T + G+ +L D
Sbjct: 95 ASCNDTVICMALVQH----GAAIF-----ATTLSDGATAFEKCDPYREGYADCATYLADV 145
Query: 114 GVDINAVNDAGDTPLHKAA 132
+ +N L +
Sbjct: 146 EQSMGLMNSGAVYALWDYS 164
Score = 54.6 bits (132), Expect = 5e-10
Identities = 16/83 (19%), Positives = 23/83 (27%), Gaps = 11/83 (13%)
Query: 55 NCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG 114
R G D L D + L G L S + F +
Sbjct: 130 PYREGYADCATYLADV----EQSMGLMNSG------AVYALWDYSA-EFGDELSFREGES 178
Query: 115 VDINAVNDAGDTPLHKAAFVGRE 137
V + + +T AA G+E
Sbjct: 179 VTVLRRDGPEETDWWWAALHGQE 201
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 76.7 bits (190), Expect = 2e-18
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+ L+ + + ++ ++ + G TPL LA+ + ++E L++
Sbjct: 66 VSADAQGVFQILIRNRATD---LD------ARMHDGTTPLILAARLAVEGMLEDLINSHA 116
Query: 116 DINAVNDAGDTPLHKAAFVGR 136
D+NAV+D G + LH AA V
Sbjct: 117 DVNAVDDLGKSALHWAAAVNN 137
Score = 75.5 bits (187), Expect = 5e-18
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 10/81 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R ++ L++ + ++N + +LG + LH A+ + LL G
Sbjct: 100 ARLAVEGMLEDLINS----HADVN------AVDDLGKSALHWAAAVNNVDAAVVLLKNGA 149
Query: 116 DINAVNDAGDTPLHKAAFVGR 136
+ + N+ +TPL AA G
Sbjct: 150 NKDMQNNREETPLFLAAREGS 170
Score = 73.2 bits (181), Expect = 4e-17
Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 10/81 (12%)
Query: 57 RNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVD 116
+D LL + + ++N TPL LA+ G + LLD +
Sbjct: 134 AVNNVDAAVVLLKN----GANKD------MQNNREETPLFLAAREGSYETAKVLLDHFAN 183
Query: 117 INAVNDAGDTPLHKAAFVGRE 137
+ + P A
Sbjct: 184 RDITDHMDRLPRDIAQERMHH 204
Score = 72.8 bits (180), Expect = 7e-17
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG- 114
R + D K+LL+ + + N + N+G TPLH A + V + L+
Sbjct: 33 ARYSRSDAAKRLLEA----SADAN------IQDNMGRTPLHAAVSADAQGVFQILIRNRA 82
Query: 115 VDINAVNDAGDTPLHKAAFVGRE 137
D++A G TPL AA + E
Sbjct: 83 TDLDARMHDGTTPLILAARLAVE 105
Score = 70.5 bits (174), Expect = 4e-16
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 87 KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
G T LHLA+ + + LL+ D N ++ G TPLH A
Sbjct: 21 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADA 70
Score = 52.8 bits (128), Expect = 1e-09
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 17/74 (22%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R G + K LLDH + ++ P +A H +V L + +
Sbjct: 166 AREGSYETAKVLLDH----FANRD------ITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215
Query: 116 DINAVNDAGDTPLH 129
+ LH
Sbjct: 216 VRS-------PQLH 222
Score = 47.4 bits (114), Expect = 1e-07
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 102 GHKSVVEFLLDQGVDI-NAVNDAGDTPLHKAAFVGR 136
+V+ + QG + N + G+T LH AA R
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR 37
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 74.8 bits (185), Expect = 2e-18
Identities = 17/86 (19%), Positives = 26/86 (30%), Gaps = 11/86 (12%)
Query: 53 LYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWT-PLHLASYFGHKSVVEFLL 111
+ G + LL H E N T P+H A+ G + L
Sbjct: 49 IQVMMMGSAQVAELLLLH----GAEPN------CADPATLTRPVHDAAREGFLDTLVVLH 98
Query: 112 DQGVDINAVNDAGDTPLHKAAFVGRE 137
G ++ + G P+ A G
Sbjct: 99 RAGARLDVCDAWGRLPVDLAEEQGHR 124
Score = 72.9 bits (180), Expect = 1e-17
Identities = 13/49 (26%), Positives = 17/49 (34%)
Query: 85 ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAF 133
L A+ G V LL+ G D NA+N G P+
Sbjct: 6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM 54
Score = 72.5 bits (179), Expect = 2e-17
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
GQ++ ++QLL+ + N + + G P+ + G V E LL G
Sbjct: 20 AARGQVETVRQLLEA----GADPN------ALNRFGRRPIQVMMM-GSAQVAELLLLHGA 68
Query: 116 DINAVNDAGDT-PLHKAAFVG 135
+ N + A T P+H AA G
Sbjct: 69 EPNCADPATLTRPVHDAAREG 89
Score = 55.1 bits (134), Expect = 7e-11
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 10/61 (16%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R G LD + L ++ G P+ LA GH+ + +L
Sbjct: 86 AREGFLDTLVVLHRA----GARLD------VCDAWGRLPVDLAEEQGHRDIARYLHAATG 135
Query: 116 D 116
D
Sbjct: 136 D 136
Score = 35.9 bits (84), Expect = 0.001
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 114 GVDINAVNDAGDTPLHKAAFVGR 136
I+ + + D L AA G+
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQ 24
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 78.5 bits (194), Expect = 3e-18
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 10/84 (11%)
Query: 56 CRNGQLDKIKQLLDHCKENNVE----INLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
N +K + L+ H + + +N + TPL LA + +V +L+
Sbjct: 133 ASNSSAEKSEDLIVHEAKECIAAGADVN------AMDCDENTPLMLAVLARRRRLVAYLM 186
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
G D N + + LH+AA
Sbjct: 187 KAGADPTIYNKSERSALHQAAANR 210
Score = 76.9 bits (190), Expect = 1e-17
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 76 VEINLSQKG---ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
V+ + +KG + + G TP+ LA+ G VV +L+ QG + AV+ T A
Sbjct: 295 VKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQ 354
Query: 133 FVGRE 137
Sbjct: 355 ANNHH 359
Score = 72.3 bits (178), Expect = 4e-16
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 75 NVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ-GVDINAVNDAGDTPLHKAAF 133
V+ + + + +S+ G T LH A+ + +V++L+ + G + + ++ G TP+ AA
Sbjct: 263 KVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQ 322
Query: 134 VGR 136
GR
Sbjct: 323 EGR 325
Score = 70.4 bits (173), Expect = 2e-15
Identities = 11/83 (13%), Positives = 25/83 (30%), Gaps = 13/83 (15%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ-- 113
+ + L+ + + + LH A+ ++ ++L+
Sbjct: 174 VLARRRRLVAYLMKA----GADPT------IYNKSERSALHQAAANRDFGMMVYMLNSTK 223
Query: 114 -GVDINAVNDAGDTPLHKAAFVG 135
DI ++ G T L A
Sbjct: 224 LKGDIEELDRNGMTALMIVAHNE 246
Score = 66.1 bits (162), Expect = 6e-14
Identities = 18/116 (15%), Positives = 30/116 (25%), Gaps = 16/116 (13%)
Query: 34 NSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDH---------CKENNVEIN--LSQ 82
N N S+ L +G + + + L H N +
Sbjct: 23 NEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHT 82
Query: 83 KG---ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
LH + G ++ E + + V+I T LH A
Sbjct: 83 NLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNIIDPRH-NRTVLHWIASNS 136
Score = 66.1 bits (162), Expect = 6e-14
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 18/90 (20%)
Query: 57 RNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHK---SVVEFLLDQ 113
N + +L+ + +I G T L + ++ + + + L+++
Sbjct: 208 ANRDFGMMVYMLNS-TKLKGDIE------ELDRNGMTALMIVAHNEGRDQVASAKLLVEK 260
Query: 114 GVDIN--------AVNDAGDTPLHKAAFVG 135
G ++ + G T LH AA V
Sbjct: 261 GAKVDYDGAARKDSEKYKGRTALHYAAQVS 290
Score = 65.0 bits (159), Expect = 2e-13
Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 19/92 (20%)
Query: 53 LYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL- 111
L+ G + + +V I T LH + E L+
Sbjct: 98 LHTEAAGSYAITEPITRE----SVNII-------DPRHNRTVLHWIASNSSAEKSEDLIV 146
Query: 112 -------DQGVDINAVNDAGDTPLHKAAFVGR 136
G D+NA++ +TPL A R
Sbjct: 147 HEAKECIAAGADVNAMDCDENTPLMLAVLARR 178
Score = 52.6 bits (127), Expect = 3e-09
Identities = 7/62 (11%), Positives = 19/62 (30%), Gaps = 10/62 (16%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+ G+++ + L+ + + T LA H ++V+
Sbjct: 321 AQEGRIEVVMYLIQQ----GASVE------AVDATDHTARQLAQANNHHNIVDIFDRCRP 370
Query: 116 DI 117
+
Sbjct: 371 ER 372
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 76.5 bits (189), Expect = 4e-18
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
G ++ L + +++ G T LH+A+ + VVE L++ G
Sbjct: 85 AGLGSDKCVRLLAEA----GADLD-----HRDMRGGLTALHMAAGYVRPEVVEALVELGA 135
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
DI ++ G T L A + +
Sbjct: 136 DIEVEDERGLTALELAREILKT 157
Score = 71.5 bits (176), Expect = 2e-16
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 12/83 (14%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R + QLL+ +++ + G T L + G V L + G
Sbjct: 53 ARKADEQALSQLLED-----RDVD------AVDENGRTALLFVAGLGSDKCVRLLAEAGA 101
Query: 116 DINAVN-DAGDTPLHKAAFVGRE 137
D++ + G T LH AA R
Sbjct: 102 DLDHRDMRGGLTALHMAAGYVRP 124
Score = 68.0 bits (167), Expect = 5e-15
Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 14/86 (16%)
Query: 52 FLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
+L ++G ++ + TP A+ + + LL
Sbjct: 19 YLIEWKDGHSPSWVPSSYI----AADVV---------SEYETPWWTAARKADEQALSQLL 65
Query: 112 DQGVDINAVNDAGDTPLHKAAFVGRE 137
+ D++AV++ G T L A +G +
Sbjct: 66 -EDRDVDAVDENGRTALLFVAGLGSD 90
Score = 55.7 bits (135), Expect = 2e-10
Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 3/51 (5%)
Query: 87 KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
+ G + GH D+ + +TP AA E
Sbjct: 11 TAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADE 58
Score = 55.7 bits (135), Expect = 2e-10
Identities = 10/103 (9%), Positives = 23/103 (22%), Gaps = 32/103 (31%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG- 114
+ + ++ L++ +I + G T L LA + + G
Sbjct: 119 AGYVRPEVVEALVEL----GADIE------VEDERGLTALELAREILKTTPKGNPMQFGR 168
Query: 115 ---------------------VDINAVNDAGDTPLHKAAFVGR 136
+I G + +
Sbjct: 169 RIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDG 211
Score = 53.8 bits (130), Expect = 8e-10
Identities = 17/108 (15%), Positives = 27/108 (25%), Gaps = 12/108 (11%)
Query: 31 ETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENN--VEINLSQKGESKS 88
T L+ E+ + + K + R G I L E EI K
Sbjct: 145 LTALELAREILKTTPKGN--PMQFGRRIGLEKVINVLEGQVFEYAEVDEIVE------KR 196
Query: 89 NLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
G +L + + A + + L A
Sbjct: 197 GKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKD--YEDGLEYAVAESV 242
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 74.1 bits (182), Expect = 2e-17
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+ +++L T LH A GH +VEFLL GV
Sbjct: 15 YSGKLDELKERILAD----KSLAT------RTDQDSRTALHWACSAGHTEIVEFLLQLGV 64
Query: 116 DINAVNDAGDTPLHKAAFVG 135
+N +DAG +PLH AA G
Sbjct: 65 PVNDKDDAGWSPLHIAASAG 84
Score = 64.1 bits (156), Expect = 1e-13
Identities = 9/50 (18%), Positives = 13/50 (26%)
Query: 87 KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
+LA + E +L + T LH A G
Sbjct: 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGH 52
Score = 60.3 bits (146), Expect = 4e-12
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
C G + ++ LL V +N K + GW+PLH+A+ G +V+ LL +G
Sbjct: 48 CSAGHTEIVEFLLQL----GVPVN------DKDDAGWSPLHIAASAGXDEIVKALLVKGA 97
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
+NAVN G TPLH AA R
Sbjct: 98 HVNAVNQNGCTPLHYAASKNRH 119
Score = 52.6 bits (126), Expect = 2e-09
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 10/83 (12%)
Query: 54 YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ 113
Y + + LL+ + +K + T +H A+ G+ +V LL
Sbjct: 112 YAASKNRHEIAVMLLEGGANPD----------AKDHYDATAMHRAAAKGNLKMVHILLFY 161
Query: 114 GVDINAVNDAGDTPLHKAAFVGR 136
N + G+TPLH A R
Sbjct: 162 KASTNIQDTEGNTPLHLACDEER 184
Score = 52.6 bits (126), Expect = 2e-09
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 10/81 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
G + +K LL N + + G TPLH A+ + LL+ G
Sbjct: 81 ASAGXDEIVKALLVKGAHVN----------AVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 116 DINAVNDAGDTPLHKAAFVGR 136
+ +A + T +H+AA G
Sbjct: 131 NPDAKDHYDATAMHRAAAKGN 151
Score = 52.2 bits (125), Expect = 4e-09
Identities = 22/79 (27%), Positives = 27/79 (34%), Gaps = 10/79 (12%)
Query: 54 YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ 113
G L + LL + N + G TPLHLA +FL+ Q
Sbjct: 145 RAAAKGNLKMVHILLFYKASTN----------IQDTEGNTPLHLACDEERVEEAKFLVTQ 194
Query: 114 GVDINAVNDAGDTPLHKAA 132
G I N TPL A
Sbjct: 195 GASIYIENKEEKTPLQVAK 213
Score = 41.0 bits (96), Expect = 3e-05
Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 12/65 (18%)
Query: 54 YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQ 113
C ++++ K L+ ++ TPL +A G ++ L +
Sbjct: 178 LACDEERVEEAKFLVTQGASIY----------IENKEEKTPLQVAK--GGLGLILKRLAE 225
Query: 114 GVDIN 118
G + +
Sbjct: 226 GEEAS 230
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 74.9 bits (185), Expect = 3e-17
Identities = 11/82 (13%), Positives = 20/82 (24%), Gaps = 12/82 (14%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+ + L + + +H+ GH ++ LLD
Sbjct: 137 VMLNDVSIVSYFLSEIPSTF-----------DLAILLSCIHITIKNGHVDMMILLLDYMT 185
Query: 116 DINAVNDAGDTP-LHKAAFVGR 136
N N P + A
Sbjct: 186 STNTNNSLLFIPDIKLAIDNKD 207
Score = 72.9 bits (180), Expect = 1e-16
Identities = 12/81 (14%), Positives = 25/81 (30%), Gaps = 11/81 (13%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+K LL ++ + + G T L+ A G+ V+ + +
Sbjct: 70 ATLEDTKIVKILLFS----GLDDS------QFDDKGNTALYYAVDSGNMQTVKLFVKKNW 119
Query: 116 DINAVNDAG-DTPLHKAAFVG 135
+ G T + A +
Sbjct: 120 RLMFYGKTGWKTSFYHAVMLN 140
Score = 72.2 bits (178), Expect = 3e-16
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 12/80 (15%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+ + + LL+ NL + PLH A+ +V+ LL G+
Sbjct: 39 IADNNVRLVCTLLNA----GALKNLLE--------NEFPLHQAATLEDTKIVKILLFSGL 86
Query: 116 DINAVNDAGDTPLHKAAFVG 135
D + +D G+T L+ A G
Sbjct: 87 DDSQFDDKGNTALYYAVDSG 106
Score = 71.0 bits (175), Expect = 6e-16
Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 13/81 (16%)
Query: 57 RNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVD 116
+ ++K L ++ + G + + A + +V LL+ G
Sbjct: 8 NTWKSKQLKSFL-----SSKDTF------KADVHGHSASYYAIADNNVRLVCTLLNAGAL 56
Query: 117 INAVNDAGDTPLHKAAFVGRE 137
N + + PLH+AA +
Sbjct: 57 KNLLE--NEFPLHQAATLEDT 75
Score = 68.7 bits (169), Expect = 5e-15
Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 12/81 (14%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGW-TPLHLASYFGHKSVVEFLLDQG 114
+G + +K + N + GW T + A S+V + L +
Sbjct: 103 VDSGNMQTVKLFVKK----NWRLM------FYGKTGWKTSFYHAVMLNDVSIVSYFLSEI 152
Query: 115 VDINAVNDAGDTPLHKAAFVG 135
+ + +H G
Sbjct: 153 PSTFDLAI-LLSCIHITIKNG 172
Score = 61.0 bits (149), Expect = 3e-12
Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 18/82 (21%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTP-LHLASYFGHKSVVEFLLDQG 114
+NG +D + LLD+ N + ++L + P + LA +++ L
Sbjct: 169 IKNGHVDMMILLLDY----MTSTN------TNNSLLFIPDIKLAIDNKDIEMLQALFKYD 218
Query: 115 VDINAVNDAGDTPLHKAAFVGR 136
++I + + +
Sbjct: 219 INIY-------SANLENVLLDD 233
Score = 58.3 bits (142), Expect = 3e-11
Identities = 6/77 (7%), Positives = 24/77 (31%), Gaps = 17/77 (22%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
N ++ ++ L + ++ I + + + ++++ V
Sbjct: 203 IDNKDIEMLQALFKY----DINIY-------------SANLENVLLDDAEIAKMIIEKHV 245
Query: 116 DINAVNDAGDTPLHKAA 132
+ + + D + K
Sbjct: 246 EYKSDSYTKDLDIVKNN 262
Score = 42.1 bits (100), Expect = 1e-05
Identities = 6/45 (13%), Positives = 12/45 (26%), Gaps = 3/45 (6%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
G + ++ KS D + G + + A
Sbjct: 1 GMDLSRINTW---KSKQLKSFLSSKDTFKADVHGHSASYYAIADN 42
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 72.1 bits (178), Expect = 3e-17
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
G++++++ LL+ N + ++ G P+ + G V E LL G
Sbjct: 20 AARGRVEEVRALLEA----GANPN------APNSYGRRPIQVMMM-GSARVAELLLLHGA 68
Query: 116 DINAVNDAGDT-PLHKAAFVG 135
+ N + A T P+H AA G
Sbjct: 69 EPNCADPATLTRPVHDAAREG 89
Score = 71.0 bits (175), Expect = 8e-17
Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 11/84 (13%)
Query: 53 LYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWT-PLHLASYFGHKSVVEFLL 111
+ G + LL H E N T P+H A+ G + L
Sbjct: 49 IQVMMMGSARVAELLLLH----GAEPN------CADPATLTRPVHDAAREGFLDTLVVLH 98
Query: 112 DQGVDINAVNDAGDTPLHKAAFVG 135
G ++ + G P+ A +G
Sbjct: 99 RAGARLDVRDAWGRLPVDLAEELG 122
Score = 71.0 bits (175), Expect = 1e-16
Identities = 12/47 (25%), Positives = 16/47 (34%)
Query: 87 KSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAF 133
L A+ G V LL+ G + NA N G P+
Sbjct: 8 SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM 54
Score = 67.5 bits (166), Expect = 2e-15
Identities = 15/80 (18%), Positives = 22/80 (27%), Gaps = 15/80 (18%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
R G LD + L ++ + G P+ LA GH+ V +L
Sbjct: 86 AREGFLDTLVVLHRA----GARLD------VRDAWGRLPVDLAEELGHRDVARYLRAAAG 135
Query: 116 DINAVNDAGDTPLHKAAFVG 135
A G
Sbjct: 136 GTRGS-----NHARIDAAEG 150
Score = 30.9 bits (71), Expect = 0.067
Identities = 5/27 (18%), Positives = 9/27 (33%), Gaps = 2/27 (7%)
Query: 111 LDQGVDINAVNDAGDTPLHKAAFVGRE 137
++ + + L AA GR
Sbjct: 1 MEPAAGSS--MEPSADWLATAAARGRV 25
Score = 30.9 bits (71), Expect = 0.070
Identities = 5/53 (9%), Positives = 10/53 (18%), Gaps = 15/53 (28%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVE 108
G D + L G + + G + +
Sbjct: 119 EELGHRDVARYLRAAAGGTR---------------GSNHARIDAAEGPSDIPD 156
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 72.0 bits (177), Expect = 6e-17
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 7/82 (8%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
G + +L + E+ KSN+ + L + + FL+++G
Sbjct: 14 AMLGTYEDFLELFEKGYEDKES-------VLKSNILYDVLRNNNDEARYKISMFLINKGA 66
Query: 116 DINAVNDAGDTPLHKAAFVGRE 137
DI + G T G
Sbjct: 67 DIKSRTKEGTTLFFPLFQGGGN 88
Score = 71.6 bits (176), Expect = 1e-16
Identities = 14/88 (15%), Positives = 26/88 (29%), Gaps = 16/88 (18%)
Query: 54 YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSV------V 107
N + L++ +I S++ G T G +
Sbjct: 48 NNNDEARYKISMFLINK----GADIK------SRTKEGTTLFFPLFQGGGNDITGTTELC 97
Query: 108 EFLLDQGVDINAVNDAGDTPLHKAAFVG 135
+ L++G DI A+ + K F
Sbjct: 98 KIFLEKGADITALYKPYKIVVFKNIFNY 125
Score = 60.8 bits (148), Expect = 1e-12
Identities = 11/98 (11%), Positives = 25/98 (25%), Gaps = 19/98 (19%)
Query: 49 HELFLYNCRN--GQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKS- 105
LF + G + K L+ +I + + +
Sbjct: 80 FPLFQGGGNDITGTTELCKIFLEK----GADIT------ALYKPYKIVVFKNIFNYFVDE 129
Query: 106 -----VVEFLLDQ-GVDINAVNDAGDTPLHKAAFVGRE 137
+ + + Q G+ + + G T L +
Sbjct: 130 NEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKP 167
Score = 56.6 bits (137), Expect = 5e-11
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 9/70 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKG---ESKSNLGWTPLHLASYFGHKSVVEFLLD 112
N +D+ + + ++ SQ G K G T L ++ + D
Sbjct: 122 IFNYFVDENEMIP------LYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMED 175
Query: 113 QGVDINAVND 122
N +
Sbjct: 176 YIKKYNLKEN 185
Score = 47.7 bits (114), Expect = 1e-07
Identities = 5/42 (11%), Positives = 12/42 (28%), Gaps = 1/42 (2%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAA 132
+ + A+ G L ++G + L+
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKESVL-KSNILYDVL 46
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 73.0 bits (180), Expect = 7e-17
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 56 CRNGQLDKIKQLLDHC---KENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLD 112
N ++ ++ LL + + G PL A+ G + +V L++
Sbjct: 83 VINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE 142
Query: 113 QGVDINAVNDAGDTPLHKAAFVGRE 137
G DI A + G+T LH +
Sbjct: 143 HGADIRAQDSLGNTVLHILILQPNK 167
Score = 65.7 bits (161), Expect = 4e-14
Identities = 29/138 (21%), Positives = 49/138 (35%), Gaps = 38/138 (27%)
Query: 31 ETPNSLSAELNQLSVKEIHELFLYN------------------CRNGQLDKIKQLLDHCK 72
E+P L+A+ N V+ + +L + L+ L++
Sbjct: 4 ESPLLLAAKEN--DVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEA-- 59
Query: 73 ENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVND---------- 122
E+ S+ G T LH+A + ++V LL +G ++A
Sbjct: 60 --APELVFEPM-TSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHN 116
Query: 123 ---AGDTPLHKAAFVGRE 137
G+ PL AA VG E
Sbjct: 117 LIYYGEHPLSFAACVGSE 134
Score = 61.1 bits (149), Expect = 2e-12
Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 4/76 (5%)
Query: 49 HELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVE 108
H L L + LL + + +L +N G TP LA G+ + +
Sbjct: 159 HILILQPNKTFACQMYNLLLSY----DGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQ 214
Query: 109 FLLDQGVDINAVNDAG 124
L+ + I A +
Sbjct: 215 HLMQKRKHIAAAHHHH 230
Score = 59.2 bits (144), Expect = 8e-12
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 90 LGWTPLHLASYFGH-KSVVEFLLDQGVDINAVNDAGDTPLHKAAF 133
+ +PL LA+ +++ + L +G +++ G+T LH AA
Sbjct: 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAAL 46
Score = 58.4 bits (142), Expect = 2e-11
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 20/90 (22%)
Query: 57 RNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVV----EFLLD 112
G + ++ L++H +I ++ +LG T LH+ +K+ LL
Sbjct: 130 CVGSEEIVRLLIEH----GADIR------AQDSLGNTVLHILILQPNKTFACQMYNLLLS 179
Query: 113 QGVDINA------VNDAGDTPLHKAAFVGR 136
+ N+ G TP A G
Sbjct: 180 YDGGDHLKSLELVPNNQGLTPFKLAGVEGN 209
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 71.3 bits (175), Expect = 3e-16
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 15/100 (15%)
Query: 53 LYNCRNGQLDKIKQLLDH-CKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
L N G+ D I LLD K N+ ++ G T LH+A K VE L+
Sbjct: 54 LLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLV 113
Query: 112 DQGVDINAVNDA--------------GDTPLHKAAFVGRE 137
++G D++A G+ PL AA +
Sbjct: 114 EKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQP 153
Score = 66.0 bits (161), Expect = 3e-14
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 7/87 (8%)
Query: 56 CRNGQLDKIKQLLDH----CKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
++ L++ + + G PL LA+ +V +L
Sbjct: 101 IERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160
Query: 112 DQG---VDINAVNDAGDTPLHKAAFVG 135
+ G D+ + G+T LH +
Sbjct: 161 ENGHKQADLRRQDSRGNTVLHALVAIA 187
Score = 52.9 bits (127), Expect = 2e-09
Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 23/97 (23%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKS---------V 106
Q + L ++ ++ + + G T LH + +
Sbjct: 148 ACTNQPHIVHYLTEN-GHKQADLR------RQDSRGNTVLHALVAIADNTRENTKFVTKM 200
Query: 107 VEFLLDQGVDINA-------VNDAGDTPLHKAAFVGR 136
+ LL + + +N+ G +PL AA G+
Sbjct: 201 YDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK 237
Score = 49.0 bits (117), Expect = 6e-08
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 67 LLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAG 124
LL C + + NL +N G +PL +A+ G + + ++ + + A +
Sbjct: 204 LLIKCAKLFPDTNLE---ALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHH 258
Score = 47.5 bits (113), Expect = 2e-07
Identities = 20/97 (20%), Positives = 27/97 (27%), Gaps = 20/97 (20%)
Query: 54 YNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLA---SYFGHKSVVEFL 110
+G + LL H K L+ + + + G T L A G + L
Sbjct: 15 RGSPDGLEGLLSFLLTHKK------RLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPIL 68
Query: 111 LDQG-----------VDINAVNDAGDTPLHKAAFVGR 136
LD V G T LH A
Sbjct: 69 LDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRC 105
Score = 43.2 bits (102), Expect = 5e-06
Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 8/49 (16%)
Query: 93 TPLHLA----SYFGHKSVVEFLLDQGVDINAVN----DAGDTPLHKAAF 133
L S G + ++ FLL + G T L KA
Sbjct: 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALL 55
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 70.6 bits (173), Expect = 8e-16
Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 15/98 (15%)
Query: 55 NCRNGQLDKIKQLLDHCKENNVEINLSQKG-ESKSNLGWTPLHLASYFGHKSVVEFLLDQ 113
N NGQ D I LLD ++ + G T LH+A + ++V L++
Sbjct: 64 NLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN 123
Query: 114 GVDINAVND--------------AGDTPLHKAAFVGRE 137
G D+ A + G+ PL AA +
Sbjct: 124 GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL 161
Score = 70.6 bits (173), Expect = 1e-15
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 7/87 (8%)
Query: 56 CRNGQLDKIKQLLDH----CKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
+ + L+++ N + KG G PL LA+ ++V+FLL
Sbjct: 109 IERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL 168
Query: 112 DQG---VDINAVNDAGDTPLHKAAFVG 135
DI+A + G+T LH V
Sbjct: 169 QNSWQPADISARDSVGNTVLHALVEVA 195
Score = 58.6 bits (142), Expect = 2e-11
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 62 DKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVN 121
++L + + + L E + G TPL LA+ G V+ ++L + +
Sbjct: 207 SMYNEILILGAKLHPTLKLE---EITNRKGLTPLALAASSGKIGVLAYILQREIH----- 258
Query: 122 DAGDTPLHKAAFVG 135
H AA
Sbjct: 259 --EPECRHAAAHHH 270
Score = 54.0 bits (130), Expect = 1e-09
Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 23/96 (23%)
Query: 57 RNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVE-------- 108
QL +K LL + +I+ ++ ++G T LH +V
Sbjct: 157 CTNQLAIVKFLLQN-SWQPADIS------ARDSVGNTVLHALVEVADNTVDNTKFVTSMY 209
Query: 109 --------FLLDQGVDINAVNDAGDTPLHKAAFVGR 136
L N G TPL AA G+
Sbjct: 210 NEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK 245
Score = 52.1 bits (125), Expect = 5e-09
Identities = 20/120 (16%), Positives = 34/120 (28%), Gaps = 23/120 (19%)
Query: 35 SLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDH---CKENNVEINLSQKGESKSNLG 91
S+SA + + +F +++ LL K+ + G
Sbjct: 1 SVSAGEKPPRLYDRRSIF-DAVAQSNCQELESLLPFLQRSKKRLTDSE-----FKDPETG 54
Query: 92 WTPLHLAS---YFGHKSVVEFLLDQGVDINAV-----------NDAGDTPLHKAAFVGRE 137
T L A + G + LLD +++ G T LH A
Sbjct: 55 KTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNM 114
Score = 30.9 bits (70), Expect = 0.093
Identities = 3/14 (21%), Positives = 5/14 (35%)
Query: 91 GWTPLHLASYFGHK 104
H A++ H
Sbjct: 259 EPECRHAAAHHHHH 272
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 69.8 bits (171), Expect = 1e-15
Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 14/99 (14%)
Query: 53 LYNCRNGQLDKIKQLLDH-CKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLL 111
+ N ++G I LL N + ++ + + G + LH+A V+ L+
Sbjct: 51 VLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLV 110
Query: 112 DQGVDINAVNDA-------------GDTPLHKAAFVGRE 137
+ G D++ G+ PL AA +
Sbjct: 111 ENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 149
Score = 67.5 bits (165), Expect = 9e-15
Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 11/91 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKG----------ESKSNLGWTPLHLASYFGHKS 105
Q D + LL++ + + + ++ + L + Y G
Sbjct: 144 ACTKQWDVVTYLLEN-PHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQ 202
Query: 106 VVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
+ L N G TPL AA G+
Sbjct: 203 MGARLCPTVQLEEISNHQGLTPLKLAAKEGK 233
Score = 66.7 bits (163), Expect = 2e-14
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 10/89 (11%)
Query: 56 CRNGQLDKIKQLLDH-----CKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFL 110
L +K L+++ + Q G PL LA+ VV +L
Sbjct: 98 IEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFY--FGELPLSLAACTKQWDVVTYL 155
Query: 111 LDQGV---DINAVNDAGDTPLHKAAFVGR 136
L+ + A + G+T LH +
Sbjct: 156 LENPHQPASLEATDSLGNTVLHALVMIAD 184
Score = 56.3 bits (136), Expect = 1e-10
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 10/70 (14%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
+G L +L + + ++ G TPL LA+ G + +L +
Sbjct: 196 MYDGLLQMGARLCPTVQLEEI----------SNHQGLTPLKLAAKEGKIEIFRHILQREF 245
Query: 116 DINAVNDAGD 125
A +
Sbjct: 246 SGAAAHHHHH 255
Score = 53.3 bits (128), Expect = 2e-09
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 16/95 (16%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLA---SYFGHKSVVEFLLD 112
G +++ LL++ + N+ + S ++ + G T L A G + + LL
Sbjct: 10 VSRGVPEELTGLLEYLRWNSKYLTDSAY--TEGSTGKTCLMKAVLNLQDGVNACIMPLLQ 67
Query: 113 QG-----------VDINAVNDAGDTPLHKAAFVGR 136
G + LH A
Sbjct: 68 IDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRS 102
Score = 33.2 bits (76), Expect = 0.017
Identities = 9/53 (16%), Positives = 13/53 (24%), Gaps = 8/53 (15%)
Query: 93 TPLHLASYFGHKSVVEFLLD--------QGVDINAVNDAGDTPLHKAAFVGRE 137
L G + LL+ G T L KA ++
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQD 56
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 68.1 bits (166), Expect = 1e-14
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 49 HELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVE 108
E + + D I + LD +N ++ + G T L++A+ G+ S+V+
Sbjct: 247 KESKPNDKNGERKDSILENLDLKWIIANMLN------AQDSNGDTCLNIAARLGNISIVD 300
Query: 109 FLLDQGVDINAVNDAGDTPLHKAA 132
LLD G D N +G P+ A
Sbjct: 301 ALLDYGADPFIANKSGLRPVDFGA 324
Score = 68.1 bits (166), Expect = 1e-14
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 89 NLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
G TPLH + + +V+ L+ G + ++ G++ L KA
Sbjct: 129 EHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSV 175
Score = 53.1 bits (127), Expect = 2e-09
Identities = 16/88 (18%), Positives = 24/88 (27%), Gaps = 14/88 (15%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGH---KSVVEFLLD 112
L+ +K L+ H N+G + L A + E LLD
Sbjct: 139 TSIANLELVKHLVKH----GSNRL------YGDNMGESCLVKAVKSVNNYDSGTFEALLD 188
Query: 113 Q-GVDINAVNDAGDTPLHKAAFVGREVG 139
+ + T LH G
Sbjct: 189 YLYPCLILEDSMNRTILHHIIITSGMTG 216
Score = 42.3 bits (99), Expect = 1e-05
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 2/92 (2%)
Query: 48 IHELFLYNCRNGQLDKIKQLLDHCKENNVEINLS--QKGESKSNLGWTPLHLASYFGHKS 105
+H + + + G K LD V+ Q G ++ +
Sbjct: 205 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILE 264
Query: 106 VVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
++ +NA + GDT L+ AA +G
Sbjct: 265 NLDLKWIIANMLNAQDSNGDTCLNIAARLGNI 296
Score = 37.7 bits (87), Expect = 5e-04
Identities = 20/136 (14%), Positives = 45/136 (33%), Gaps = 9/136 (6%)
Query: 6 GRIKFAPGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIK 65
+RT + T + +S + L +++ N + +L+
Sbjct: 12 NENNGTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVND----NEQKMKLEAFL 67
Query: 66 QLLDHCKENNVEINLSQKG---ESKSNLGWTPLHLASY-FGHKSVVEFLLDQGVDINAVN 121
Q L + + +L+ S+ S+ + V + + +++N
Sbjct: 68 QRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPV 127
Query: 122 DA-GDTPLHKAAFVGR 136
D G+TPLH +
Sbjct: 128 DEHGNTPLHWLTSIAN 143
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 59.6 bits (144), Expect = 1e-11
Identities = 12/80 (15%), Positives = 22/80 (27%), Gaps = 10/80 (12%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
NG L + +L + + + + LA+ GH V+ L +
Sbjct: 136 AENGHLHVLNRLCELAPTEIMAM--------IQAENYHAFRLAAENGHLHVLNRLCELAP 187
Query: 116 DINA--VNDAGDTPLHKAAF 133
+ AA
Sbjct: 188 TEATAMIQAENYYAFRWAAV 207
Score = 58.4 bits (141), Expect = 3e-11
Identities = 15/89 (16%), Positives = 23/89 (25%), Gaps = 13/89 (14%)
Query: 49 HELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVE 108
+ C + LD + LL + V + LA+ GH V+
Sbjct: 97 FVAAITGCSSA-LDTLCLLLTSDEIVKV----------IQAENYQAFRLAAENGHLHVLN 145
Query: 109 FLLDQGVDINAVNDA--GDTPLHKAAFVG 135
L + AA G
Sbjct: 146 RLCELAPTEIMAMIQAENYHAFRLAAENG 174
Score = 55.3 bits (133), Expect = 4e-10
Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 7/111 (6%)
Query: 30 EETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLL--DHCKENNVEINLSQKGESK 87
+ ++ L LS KE +FL +N +++++QLL + N L K
Sbjct: 31 QHFISANELSLMTLSYKEAIHIFLPGTKN--MEQVRQLLCLYYAHYNRNAKQLWSDAHKK 88
Query: 88 SNLGWTPLHLASYFGHKS---VVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
+A+ G S + LL + + AA G
Sbjct: 89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENG 139
Score = 46.1 bits (109), Expect = 7e-07
Identities = 9/102 (8%), Positives = 26/102 (25%), Gaps = 18/102 (17%)
Query: 53 LYNCRNGQLDKIKQLLDHCKENNVE----INLSQKG------ESKSNLGWTPLHLASYFG 102
++ G+ + H + G +S+ G+ L
Sbjct: 230 IHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN 289
Query: 103 HKSVVEFL--------LDQGVDINAVNDAGDTPLHKAAFVGR 136
+ +++ + + + + L A +G
Sbjct: 290 DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGN 331
Score = 45.3 bits (107), Expect = 1e-06
Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 7/77 (9%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGV 115
NG L + +L + + + + A GH +V+ FLLD V
Sbjct: 171 AENGHLHVLNRLCELAPTEAT-AMIQAEN------YYAFRWAAVGRGHHNVINFLLDCPV 223
Query: 116 DINAVNDAGDTPLHKAA 132
+ K
Sbjct: 224 MLAYAEIHEFEYGEKYV 240
Score = 44.9 bits (106), Expect = 2e-06
Identities = 8/52 (15%), Positives = 13/52 (25%), Gaps = 3/52 (5%)
Query: 85 ESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
+ L LA G++ LL + + GR
Sbjct: 313 ATIPGDANELLRLALRLGNQGACALLLSIPSVLAL---TKANNYYINETGGR 361
Score = 25.3 bits (55), Expect = 9.4
Identities = 6/59 (10%), Positives = 11/59 (18%), Gaps = 13/59 (22%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQG 114
R G LL + ++ G + L+
Sbjct: 327 LRLGNQGACALLLSIPSVLALTKA-------------NNYYINETGGRLDLRAVALEHH 372
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 51.2 bits (122), Expect = 1e-08
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVG 135
G T LH + ++ LL I N++G+TPL A +
Sbjct: 205 GSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLK 249
Score = 45.0 bits (106), Expect = 1e-06
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 7/84 (8%)
Query: 56 CRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKS---VVEFLLD 112
+ + + Q + +I L+ E T LHLA ++ +V+FL+
Sbjct: 138 VKTRDIFGLLQAYADGVDLTEKIPLANGHEP----DETALHLAVRSVDRTSLHIVDFLVQ 193
Query: 113 QGVDINAVNDAGDTPLHKAAFVGR 136
+++ G T LH
Sbjct: 194 NSGNLDKQTGKGSTALHYCCLTDN 217
Score = 28.0 bits (62), Expect = 0.97
Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 14/109 (12%)
Query: 14 GNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQ----LLD 69
G +++ + +ET L+ + I + + N +G LDK L
Sbjct: 153 GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN--SGNLDKQTGKGSTALH 210
Query: 70 HCKENN----VEINLSQKG---ESKSNLGWTPLHLASYFGHKSVVEFLL 111
+C + +++ L + E + G TPL +A H+ E L
Sbjct: 211 YCCLTDNAECLKL-LLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 51.1 bits (122), Expect = 1e-08
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
G T LH A+ + ++ LL + VN+AG+T L A
Sbjct: 226 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 266
Score = 47.7 bits (113), Expect = 2e-07
Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 7/94 (7%)
Query: 46 KEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKS 105
+ N L + + + + G LHLA +++
Sbjct: 149 TPEPQRLWTAICNRDLLSVLEAFANG----QDFGQPLPGPDAQAPEELVLHLAVKVANQA 204
Query: 106 ---VVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
+V+F++ G ++A G+T LH AA +
Sbjct: 205 SLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQ 238
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 46.8 bits (111), Expect = 4e-07
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 74 NNVEINLSQKGESKSNLGWTPLHLASYFGHKS---VVEFLLDQGVDINAVNDAGDTPLHK 130
N + G LHLA +++ +V+F++ G ++A G+T LH
Sbjct: 154 NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 213
Query: 131 AAFVGR 136
AA +
Sbjct: 214 AALYNQ 219
Score = 39.5 bits (92), Expect = 1e-04
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKA 131
G T LH A+ + ++ LL + VN+AG+T L A
Sbjct: 207 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 43.2 bits (101), Expect = 7e-06
Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 12/121 (9%)
Query: 12 PGGNRTHDQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYN-CRNGQLDKIKQLLDH 70
PG + + + A++N ++ + + L L + LL
Sbjct: 199 PGALLFRASGHPPSLPTMAD-ALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLL-- 255
Query: 71 CKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHK 130
+N +N + G PLH A+ GH + L +G D+ A + G PL
Sbjct: 256 --QNGANVN------QADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTI 307
Query: 131 A 131
A
Sbjct: 308 A 308
Score = 42.8 bits (100), Expect = 1e-05
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 91 GWTPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGR 136
TPL A+ EFLL G ++N + AG PLH A +G
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGH 280
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 7e-06
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 20/66 (30%)
Query: 33 PNSLSAELNQLSVKEIHE-------LFL----YNCRNGQ---------LDKIKQLLDHCK 72
P ++A +Q +++ + E + YN N Q LD + +L+ K
Sbjct: 1814 PGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIK 1873
Query: 73 ENNVEI 78
++I
Sbjct: 1874 LQKIDI 1879
Score = 35.0 bits (80), Expect = 0.005
Identities = 27/152 (17%), Positives = 56/152 (36%), Gaps = 23/152 (15%)
Query: 5 HGRIKFA---PGGNRTH-DQVRTRHSSSEEETPNSLSAELNQLSVKEIHELFL-Y----- 54
HG ++ P + Q++ + + E +A+ + E+ FL Y
Sbjct: 13 HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLV 72
Query: 55 -NCRNGQLDKI-KQLLDH-----CKENNV-EINLSQKGESKSNLGWTPLHLASYFGHKSV 106
+ GQ D++ L + N++ + E+ + L T + +Y + +
Sbjct: 73 EPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIM 132
Query: 107 VEFLLDQGVD---INAVNDAGDTPLHKAAFVG 135
+ D+ + AV + G+ L A F G
Sbjct: 133 AKRPFDKKSNSALFRAVGE-GNAQLV-AIFGG 162
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch
recognition, mismatched unpaired DNA binding protein-DNA
complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A*
2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Length = 934
Score = 29.2 bits (66), Expect = 0.39
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 28 SEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCK 72
+ + ++L A L Q+ KE + G + K++Q++
Sbjct: 179 PDNDQFSNLEALLIQIGPKEC--VLPGGETAGDMGKLRQIIQRGG 221
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 28.3 bits (63), Expect = 0.43
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 27 SSEEETPNSLS-AELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVE 77
SS+E LS E+ +L KE+ L K+ LD + V+
Sbjct: 21 SSQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVD 72
>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase
inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB:
3unw_A* 3ss3_A 3ss4_A 3ss5_A*
Length = 534
Score = 28.6 bits (63), Expect = 0.83
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 93 TPLHLASYFGHKSVVEFLLDQGVDINAVNDAGDTPLHKAAFVGRE 137
PL S ++ E + + V + D T +++ +G +
Sbjct: 484 GPLDYESLQQELALKETVW-KKVSPESNEDISTTVVYRMESLGEK 527
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 1.0
Identities = 8/55 (14%), Positives = 22/55 (40%), Gaps = 13/55 (23%)
Query: 20 QVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKEN 74
+++ ++S+ E + + K++ E ++ Q++K K N
Sbjct: 97 RLQELDAASKVME-----QEWREKAKKDLEEW--NQRQSEQVEKNK------INN 138
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A;
nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 26.9 bits (60), Expect = 1.4
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 36 LSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLS 81
+ EL + ++ EL L N R+ + K++ L D + ++
Sbjct: 7 IHLELRNRTPSDVKELVLDNSRSNEG-KLEGLTDEFE-ELEFLSTI 50
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins,
protein dynamics, binding protein; 2.10A {Homo sapiens}
PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 25.9 bits (57), Expect = 2.3
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 24 RHSSSEEETPNSLS-AELNQLSVKEIHELFLYNCRN-GQLDKIKQLLDHCKENNVE 77
++ S N +S + ++ KE++ L + N DK+ Q LD + +
Sbjct: 19 KYVSKYSLVKNKISKSSFREMLQKELNH-MLSDTGNRKAADKLIQNLDANHDGRIS 73
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 26.0 bits (57), Expect = 2.8
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 27 SSEEETPNSLS-AELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVE 77
+ L AEL +L KE+ R +K +LD K+ V+
Sbjct: 20 AGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVD 71
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 3.1
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 18/80 (22%)
Query: 20 QVRTRHSSSEEETPNSLSAELNQLSVKEIHELFLYNCRN-----GQLDKIKQLLDHCKEN 74
+ + RH S+ S+ L QL + ++ ++ C N ++ I L +EN
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQL---KFYKPYI--CDNDPKYERLVNAILDFLPKIEEN 558
Query: 75 N--------VEINLSQKGES 86
+ I L + E+
Sbjct: 559 LICSKYTDLLRIALMAEDEA 578
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 25.5 bits (56), Expect = 3.8
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 27 SSEEETPNSLS-AELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVE 77
S E + +L+ EL L KE+ +DK+ + LD + V+
Sbjct: 19 SGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVD 70
>3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta
barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB:
2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A*
3fdk_A* 3htw_A*
Length = 339
Score = 26.2 bits (57), Expect = 3.8
Identities = 10/73 (13%), Positives = 20/73 (27%), Gaps = 5/73 (6%)
Query: 50 ELFLYNCRNGQLDKIKQLLDHCKENNVEINLSQKGESKSNLGWTPLHLASYFGHKSVVEF 109
+ G D++ D + + W PLH+ ++
Sbjct: 261 SVLTTLLGEGYADRLLLSHDSIWHWLGRPPAIPEAALPAVKDWHPLHI-----SDDILPD 315
Query: 110 LLDQGVDINAVND 122
L +G+ V
Sbjct: 316 LRRRGITEEQVGQ 328
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 25.2 bits (55), Expect = 4.0
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 27 SSEEETPNSLS-AELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVE 77
S +E L+ +EL +L +E+ K+ LD ++N V+
Sbjct: 20 SGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVD 71
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 25.1 bits (55), Expect = 4.3
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 27 SSEEETPNSLS-AELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVE 77
S E + L +EL +L E+ +DK+ + LD + +
Sbjct: 19 SGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECD 70
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 25.2 bits (55), Expect = 5.0
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 27 SSEEETPNSLS-AELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVE 77
S +E L+ +EL +L +E+ K+ LD ++N V+
Sbjct: 23 SGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVD 74
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 25.9 bits (57), Expect = 5.2
Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 5/36 (13%)
Query: 33 PNSLS--AELNQLSVKEIHEL---FLYNCRNGQLDK 63
N S + + +E H F+ +G
Sbjct: 4 GNGKSIAGDQKAVPTQETHVWYRTFMMEYPSGLQTL 39
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal
binding protein, binding protein; NMR {Homo sapiens}
PDB: 3c1v_A
Length = 113
Score = 25.3 bits (55), Expect = 5.4
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 27 SSEEETPNSLS-AELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVE 77
S +E L+ +EL +L +E+ K+ LD ++N V+
Sbjct: 32 SGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVD 83
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 25.2 bits (55), Expect = 5.4
Identities = 8/52 (15%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 27 SSEEETPNSLS-AELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVE 77
+ + +S E E+ G LD++ + LD + ++
Sbjct: 23 AGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLD 74
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote
in leucines, structural genomics; NMR {Homo sapiens}
PDB: 2rr6_A 2jqd_A
Length = 168
Score = 25.1 bits (55), Expect = 7.1
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 36 LSAELNQLSVKEIHELFLYNCRNGQLDKIKQLLDHCKENNVEINLS 81
+ EL + + EL L NC++ KI+ L N ++L
Sbjct: 14 IHLELRNRTPAAVRELVLDNCKS-NDGKIEGLTAEFV-NLEFLSLI 57
>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine
methyltransferase; TIM barrel, methyltetrahydrofolate,
zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A
1xdj_A 1xr2_A* 1xpg_A*
Length = 766
Score = 25.5 bits (56), Expect = 7.9
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 90 LGWTPLHLASYFGHKSVVEFLLDQGVD 116
L PL + +Y+ S E + V
Sbjct: 254 LSEFPLTVFTYYDSVSDYEACVSLPVK 280
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix,
protein-DNA, transcription factor, terminat
mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O
3n7q_A*
Length = 343
Score = 25.4 bits (55), Expect = 8.5
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 96 HLASYFGHKSVVEFLLDQGVDINAV 120
+ ++ +++ LL GVDI+
Sbjct: 12 TDSEPLKNEDLLKNLLTMGVDIDMA 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.131 0.382
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,952,984
Number of extensions: 99121
Number of successful extensions: 854
Number of sequences better than 10.0: 1
Number of HSP's gapped: 636
Number of HSP's successfully gapped: 353
Length of query: 139
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 55
Effective length of database: 4,356,429
Effective search space: 239603595
Effective search space used: 239603595
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.0 bits)