BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1573
         (104 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
           Mglur5 Complexed With Glutamate
 pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
           Mglur5 Complexed With Glutamate
          Length = 492

 Score = 27.3 bits (59), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 7/49 (14%)

Query: 2   LFQYFIDVVPTDVD---TMFTTLRTYQYSAKELSRVIDHDVGSHGMSGI 47
           LF+YF+ VVP+D      M   ++ Y ++   +S V  H  G++G SG+
Sbjct: 171 LFKYFMRVVPSDAQQARAMVDIVKRYNWTY--VSAV--HTEGNYGESGM 215


>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase
           (Tm0748) From Thermotoga Maritima At 1.65 A Resolution
          Length = 277

 Score = 26.9 bits (58), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 29  KELSRVIDHDVGSHGMSGIFFKYNTNALKVIVKETRDSFLNF 70
           KE  R+ID  VGS  M  +  +   ++ KV   E R+ F   
Sbjct: 111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKL 152


>pdb|1SR2|A Chain A, Solution Structure Of The Escherichia Coli Yojn
          Histidine- Phosphotransferase (Hpt) Domain
          Length = 116

 Score = 26.2 bits (56), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 8/50 (16%)

Query: 3  FQYFIDVVPTDVDTMFTTLRTYQYSAKELSRVIDHDVGSHGMSGIFFKYN 52
          +  F+D VP DV  ++T   T  ++A  L++       +H + G+F   N
Sbjct: 37 YALFVDTVPDDVKRLYTEAATSDFAA--LAQT------AHRLKGVFAMLN 78


>pdb|1UEB|A Chain A, Crystal Structure Of Translation Elongation Factor P From
           Thermus Thermophilus Hb8
 pdb|1UEB|B Chain B, Crystal Structure Of Translation Elongation Factor P From
           Thermus Thermophilus Hb8
 pdb|3HUW|V Chain V, Structure Of Ef-P Bound To The 70s Ribosome; This File
           Contains The 30s Subunit, Mrna, P-Site Trna And Ef-P For
           Molecule I.
 pdb|3HUY|V Chain V, Structure Of Ef-P Bound To The 70s Ribosome; This File
           Contains The 30s Subunit, Mrna, P-Site Trna And Ef-P For
           Molecule Ii
          Length = 184

 Score = 25.0 bits (53), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 22/48 (45%)

Query: 11  PTDVDTMFTTLRTYQYSAKELSRVIDHDVGSHGMSGIFFKYNTNALKV 58
           P   + +F  L TY+  A   SRV+  +    GM+ +   Y    +KV
Sbjct: 75  PEGEEMVFMDLETYEQFAVPRSRVVGAEFFKEGMTALGDMYEGQPIKV 122


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.141    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,722,532
Number of Sequences: 62578
Number of extensions: 93778
Number of successful extensions: 256
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 254
Number of HSP's gapped (non-prelim): 4
length of query: 104
length of database: 14,973,337
effective HSP length: 69
effective length of query: 35
effective length of database: 10,655,455
effective search space: 372940925
effective search space used: 372940925
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)