BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1573
(104 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CR89|ERGI2_MOUSE Endoplasmic reticulum-Golgi intermediate compartment protein 2
OS=Mus musculus GN=Ergic2 PE=2 SV=1
Length = 377
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 57/85 (67%)
Query: 2 LFQYFIDVVPTDVDTMFTTLRTYQYSAKELSRVIDHDVGSHGMSGIFFKYNTNALKVIVK 61
+FQYFI VVPT + T + T+Q+S E R+I+H GSHG+SGIF KY+ ++L V V
Sbjct: 246 MFQYFITVVPTKLHTYKISADTHQFSVTERERIINHAAGSHGVSGIFMKYDLSSLMVTVT 305
Query: 62 ETRDSFLNFFIRLSGVLGGVYIVTG 86
E F FF+RL G++GG++ TG
Sbjct: 306 EEHMPFWQFFVRLCGIIGGIFSTTG 330
>sp|Q4R5C3|ERGI2_MACFA Endoplasmic reticulum-Golgi intermediate compartment protein 2
OS=Macaca fascicularis GN=ERGIC2 PE=2 SV=1
Length = 377
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 57/85 (67%)
Query: 2 LFQYFIDVVPTDVDTMFTTLRTYQYSAKELSRVIDHDVGSHGMSGIFFKYNTNALKVIVK 61
+FQYFI VVPT + T + T+Q+S E R+I+H GSHG+SGIF KY+ ++L V V
Sbjct: 246 MFQYFITVVPTKLHTYKISADTHQFSVTERERIINHAAGSHGVSGIFMKYDLSSLMVTVT 305
Query: 62 ETRDSFLNFFIRLSGVLGGVYIVTG 86
E F FF+RL G++GG++ TG
Sbjct: 306 EEHMPFWQFFVRLCGIVGGIFSTTG 330
>sp|Q5EHU7|ERGI2_GECJA Endoplasmic reticulum-Golgi intermediate compartment protein 2
OS=Gecko japonicus GN=ERGIC2 PE=2 SV=1
Length = 377
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 57/85 (67%)
Query: 2 LFQYFIDVVPTDVDTMFTTLRTYQYSAKELSRVIDHDVGSHGMSGIFFKYNTNALKVIVK 61
+FQYFI VVPT + T + T+Q+S E RVI+H GSHG+SGIF KY+ ++L V V
Sbjct: 246 MFQYFITVVPTKLHTYKISADTHQFSVTERERVINHAAGSHGVSGIFMKYDLSSLMVTVT 305
Query: 62 ETRDSFLNFFIRLSGVLGGVYIVTG 86
E F FF+RL G++GG++ TG
Sbjct: 306 EEHMPFWQFFVRLCGIVGGIFSTTG 330
>sp|Q96RQ1|ERGI2_HUMAN Endoplasmic reticulum-Golgi intermediate compartment protein 2
OS=Homo sapiens GN=ERGIC2 PE=1 SV=2
Length = 377
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 57/85 (67%)
Query: 2 LFQYFIDVVPTDVDTMFTTLRTYQYSAKELSRVIDHDVGSHGMSGIFFKYNTNALKVIVK 61
+FQYFI VVPT + T + T+Q+S E R+I+H GSHG+SGIF KY+ ++L V V
Sbjct: 246 MFQYFITVVPTKLHTYKISADTHQFSVTERERIINHAAGSHGVSGIFMKYDLSSLMVTVT 305
Query: 62 ETRDSFLNFFIRLSGVLGGVYIVTG 86
E F FF+RL G++GG++ TG
Sbjct: 306 EEHMPFWQFFVRLCGIVGGIFSTTG 330
>sp|Q7T2D4|ERGI2_DANRE Endoplasmic reticulum-Golgi intermediate compartment protein 2
OS=Danio rerio GN=ergic2 PE=2 SV=1
Length = 376
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 55/85 (64%)
Query: 2 LFQYFIDVVPTDVDTMFTTLRTYQYSAKELSRVIDHDVGSHGMSGIFFKYNTNALKVIVK 61
+FQYFI +VPT + T T+QYS E RVI+H GSHG+SGIF KY+ ++L V V
Sbjct: 245 MFQYFITIVPTKLQTYKVYADTHQYSVTERERVINHAAGSHGVSGIFMKYDISSLMVKVT 304
Query: 62 ETRDSFLNFFIRLSGVLGGVYIVTG 86
E F F +RL G++GG++ TG
Sbjct: 305 EQHMPFWQFLVRLCGIIGGIFSTTG 329
>sp|Q6NVS2|ERGI3_XENTR Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Xenopus tropicalis GN=ergic3 PE=2 SV=1
Length = 384
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 1 MLFQYFIDVVPT---DVDTMFTTLRTYQYSAKELSRVIDHDVGSHGMSGIFFKYNTNALK 57
M+FQYF+ +VPT VD LRT Q+S ++ + +G G+ G+F Y + +
Sbjct: 275 MMFQYFVKIVPTVYVKVDG--EVLRTNQFSVTRHEKMTNGLIGDQGLPGVFVLYELSPMM 332
Query: 58 VIVKETRDSFLNFFIRLSGVLGGVYIVTG 86
V + E SF +F + ++GGV+ V G
Sbjct: 333 VKLTEKHRSFTHFLTGVCAIIGGVFTVAG 361
>sp|Q4R8X1|ERGI3_MACFA Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Macaca fascicularis GN=ERGIC3 PE=2 SV=1
Length = 382
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 1 MLFQYFIDVVPT---DVDTMFTTLRTYQYSAKELSRVIDHDVGSHGMSGIFFKYNTNALK 57
M+FQYF+ VVPT VD LRT Q+S +V + +G G+ G+F Y + +
Sbjct: 273 MMFQYFVKVVPTVYMKVDG--EVLRTNQFSVTRHEKVANGLLGDQGLPGVFVLYELSPMM 330
Query: 58 VIVKETRDSFLNFFIRLSGVLGGVYIVTG 86
V + E SF +F + ++GG++ V G
Sbjct: 331 VKLTEKHRSFTHFLTGVCAIIGGMFTVAG 359
>sp|Q9CQE7|ERGI3_MOUSE Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Mus musculus GN=Ergic3 PE=2 SV=1
Length = 383
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 1 MLFQYFIDVVPT---DVDTMFTTLRTYQYSAKELSRVIDHDVGSHGMSGIFFKYNTNALK 57
M+FQYF+ VVPT VD LRT Q+S +V + +G G+ G+F Y + +
Sbjct: 274 MMFQYFVKVVPTVYMKVDG--EVLRTNQFSVTRHEKVANGLLGDQGLPGVFVLYELSPMM 331
Query: 58 VIVKETRDSFLNFFIRLSGVLGGVYIVTG 86
V + E SF +F + ++GG++ V G
Sbjct: 332 VKLTEKHRSFTHFLTGVCAIIGGMFTVAG 360
>sp|Q9Y282|ERGI3_HUMAN Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Homo sapiens GN=ERGIC3 PE=1 SV=1
Length = 383
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 1 MLFQYFIDVVPT---DVDTMFTTLRTYQYSAKELSRVIDHDVGSHGMSGIFFKYNTNALK 57
M+FQYF+ VVPT VD LRT Q+S +V + +G G+ G+F Y + +
Sbjct: 274 MMFQYFVKVVPTVYMKVDG--EVLRTNQFSVTRHEKVANGLLGDQGLPGVFVLYELSPMM 331
Query: 58 VIVKETRDSFLNFFIRLSGVLGGVYIVTG 86
V + E SF +F + ++GG++ V G
Sbjct: 332 VKLTEKHRSFTHFLTGVCAIIGGMFTVAG 360
>sp|Q5R8G3|ERGI3_PONAB Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Pongo abelii GN=ERGIC3 PE=2 SV=1
Length = 383
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 1 MLFQYFIDVVPT---DVDTMFTTLRTYQYSAKELSRVIDHDVGSHGMSGIFFKYNTNALK 57
M+FQYF+ VVPT VD LRT Q+S +V + +G G+ G+F Y + +
Sbjct: 274 MMFQYFVKVVPTVYMKVDG--EVLRTNQFSVTRHEKVANGLLGDQGLPGVFVLYELSPMM 331
Query: 58 VIVKETRDSFLNFFIRLSGVLGGVYIVTG 86
V + E SF +F + ++GG++ V G
Sbjct: 332 VKLTEKHRSFTHFLTGVCAIIGGMFTVAG 360
>sp|Q5EAE0|ERGI3_BOVIN Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Bos taurus GN=ERGIC3 PE=2 SV=1
Length = 383
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 1 MLFQYFIDVVPT---DVDTMFTTLRTYQYSAKELSRVIDHDVGSHGMSGIFFKYNTNALK 57
M+FQYF+ VVPT VD LRT Q+S +V + +G G+ G+F Y + +
Sbjct: 274 MMFQYFVKVVPTVYMKVDG--EVLRTNQFSVTRHEKVANGLMGDQGLPGVFVLYELSPMM 331
Query: 58 VIVKETRDSFLNFFIRLSGVLGGVYIVTG 86
V + E SF +F + ++GG++ V G
Sbjct: 332 VKLTEKHRSFTHFLTGVCAIIGGMFTVAG 360
>sp|Q66KH2|ERGI3_XENLA Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Xenopus laevis GN=ergic3 PE=2 SV=1
Length = 389
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 1 MLFQYFIDVVPT---DVDTMFTTLRTYQYSAKELSRVIDHDVGSHGMSGIFFKYNTNALK 57
M+FQYF+ +VPT VD LRT Q+S ++ + +G G+ G+F Y + +
Sbjct: 280 MMFQYFVKIVPTVYVKVDG--EVLRTNQFSVTRHEKMTNGLIGDQGLPGVFVLYELSPMM 337
Query: 58 VIVKETRDSFLNFFIRLSGVLGGVYIVTG 86
V E SF +F + ++GGV+ V G
Sbjct: 338 VKFTEKHRSFTHFLTGVCAIIGGVFTVAG 366
>sp|Q803I2|ERGI3_DANRE Endoplasmic reticulum-Golgi intermediate compartment protein 3
OS=Danio rerio GN=ergic3 PE=2 SV=1
Length = 383
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 1 MLFQYFIDVVPTD-VDTMFTTLRTYQYSAKELSRVIDHDVGSHGMSGIFFKYNTNALKVI 59
M++QYF+ +VPT V ++T Q+S ++ + +G G+ G+F Y + + V
Sbjct: 274 MMYQYFVKIVPTIYVKGDGEVVKTNQFSVTRHEKIANGLIGDQGLPGVFVLYELSPMMVK 333
Query: 60 VKETRDSFLNFFIRLSGVLGGVYIVTG 86
E + SF +F + ++GGV+ V G
Sbjct: 334 FTEKQRSFTHFLTGVCAIIGGVFTVAG 360
>sp|Q04651|ERV41_YEAST ER-derived vesicles protein ERV41 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ERV41 PE=1 SV=1
Length = 352
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 5 YFIDVVPTDVDTMFTTLRTYQYSAKELSRVIDHDVGSHG--MSGIFFKYNTNALKVIVKE 62
Y+ VVPT + + T QYS + R + DV + G M GIFFKYN L ++V +
Sbjct: 236 YYTSVVPTLFKKLGAEVDTNQYSVNDY-RYLYKDVAAKGDKMPGIFFKYNFEPLSIVVSD 294
Query: 63 TRDSFLNFFIRLSGV 77
R SF+ F +RL +
Sbjct: 295 VRLSFIQFLVRLVAI 309
>sp|Q54DW2|ERGI3_DICDI Probable endoplasmic reticulum-Golgi intermediate compartment
protein 3 OS=Dictyostelium discoideum GN=ergic3 PE=3
SV=1
Length = 383
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 2 LFQYFIDVVPTDVDTMF-TTLRTYQYSAKELSRVI-DHDVGSHGMSGIFFKYNTNALKVI 59
+FQYF+ VVPT + + + T QYS E R++ G+ G+FF Y+ + + +
Sbjct: 274 MFQYFVKVVPTIYEGLNGNRIATNQYSVTEHYRLLAKKGEEPSGLPGLFFMYDLSPIMMK 333
Query: 60 VKETRDSFLNFFIRLSGVLGGVYIVTG 86
V E SF +F + ++GGV+ V G
Sbjct: 334 VSERGKSFASFLTNVCAIIGGVFTVFG 360
>sp|O94283|ERV41_SCHPO ER-derived vesicles protein 41 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=erv41 PE=1 SV=1
Length = 333
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 3 FQYFIDVVPTDVDTMFTTLRTYQYSAKELSRVIDHDVGSHGMSGIFFKYNTNALKVIVKE 62
FQY++ V+PT + F + T QYS E S V GS GIF Y+ L V V +
Sbjct: 222 FQYYLSVLPTSYKSSFRSFETNQYSLTENSVVRQLGFGSLP-PGIFIDYDLEPLAVRVVD 280
Query: 63 TRDSFLNFFIRLSGVLGGVYIV 84
+ + +R+ + GG+ V
Sbjct: 281 KHPNVASTLLRILAISGGLITV 302
>sp|Q69SA9|PDI54_ORYSJ Protein disulfide isomerase-like 5-4 OS=Oryza sativa subsp.
japonica GN=PDIL5-4 PE=2 SV=1
Length = 485
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 14 VDTMFTTLRTYQYSAKELSRVIDHDVGSHG-------MSGIFFKYNTNALKVIVKETRDS 66
V T TLR S+KEL V +++ +H + + F + + ++V+V E S
Sbjct: 388 VKTELVTLR----SSKELKLVEEYEYTAHSSLVHSFYVPVVKFHFEPSPMQVLVTELPKS 443
Query: 67 FLNFFIRLSGVLGGVYIVTG 86
F +F + ++GGV+ V G
Sbjct: 444 FSHFITNVCAIIGGVFTVAG 463
>sp|Q4V8Y6|ERGI1_DANRE Endoplasmic reticulum-Golgi intermediate compartment protein 1
OS=Danio rerio GN=ergic1 PE=2 SV=1
Length = 290
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 5 YFIDVVPTDVDTMFTTLR-TYQYSAKELSRVIDHDVGSHGMSGIFFKYNTNALKVIVKET 63
Y + +VPT + + R +YQY+ V G + I+F+Y+ + + V E
Sbjct: 187 YILKIVPTVYEELGGKQRFSYQYTVANKEYVAYSHTG-RIIPAIWFRYDLSPITVKYTER 245
Query: 64 RDSFLNFFIRLSGVLGGVYIVTG 86
R F F + ++GG + V G
Sbjct: 246 RRPFYRFITTICAIIGGTFTVAG 268
>sp|P39727|ERV46_YEAST ER-derived vesicles protein ERV46 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ERV46 PE=1 SV=2
Length = 415
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Query: 3 FQYFIDVVPTDVDTM-FTTLRTYQYSAKELSRVI------DHDVGSH---GMSGIFFKYN 52
F YF +VPT + + + T Q+SA SR + DH H G+ G+F +
Sbjct: 302 FSYFAKIVPTRYEYLDNVVIETAQFSATFHSRPLAGGRDKDHPNTLHVRGGIPGMFVFFE 361
Query: 53 TNALKVIVKETR-DSFLNFFIRLSGVLGGVYIV 84
+ LKVI KE ++ F + +GGV V
Sbjct: 362 MSPLKVINKEQHGQTWSGFILNCITSIGGVLAV 394
>sp|Q969X5|ERGI1_HUMAN Endoplasmic reticulum-Golgi intermediate compartment protein 1
OS=Homo sapiens GN=ERGIC1 PE=1 SV=1
Length = 290
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 5 YFIDVVPTDVDTMFTTLR-TYQYSAKELSRVIDHDVGSHGMSGIFFKYNTNALKVIVKET 63
Y + +VPT + R +YQY+ V G + I+F+Y+ + + V E
Sbjct: 187 YILKIVPTVYEDKSGKQRYSYQYTVANKEYVAYSHTG-RIIPAIWFRYDLSPITVKYTER 245
Query: 64 RDSFLNFFIRLSGVLGGVYIVTG 86
R F + ++GG + V G
Sbjct: 246 RQPLYRFITTICAIIGGTFTVAG 268
>sp|Q9DC16|ERGI1_MOUSE Endoplasmic reticulum-Golgi intermediate compartment protein 1
OS=Mus musculus GN=Ergic1 PE=1 SV=1
Length = 290
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 5 YFIDVVPTDVDTMFTTLR-TYQYSAKELSRVIDHDVGSHGMSGIFFKYNTNALKVIVKET 63
Y + +VPT + R +YQY+ V G + I+F+Y+ + + V E
Sbjct: 187 YILKIVPTVYEDKSGKQRYSYQYTVANKEYVAYSHTG-RIIPAIWFRYDLSPITVKYTER 245
Query: 64 RDSFLNFFIRLSGVLGGVYIVTG 86
R F + ++GG + V G
Sbjct: 246 RQPLYRFITTICAIIGGTFTVAG 268
>sp|P21455|VRP1_SALTM 28.1 kDa virulence protein OS=Salmonella typhimurium GN=mkaB PE=1
SV=2
Length = 255
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 45 SGIFFKYNTNALKVIVKETRDSFLNFFIRLSGVLGGVYIVTGTCSISQGALVEYFRAM 102
+GIF KYN ++ IV++TR F+N + G GG T ++ G +Y R M
Sbjct: 22 AGIFAKYNYYSVFDIVRQTRKQFINANMSWPGSRGG-----KTWDLAMGQ-AQYIRCM 73
>sp|Q31F53|GATA_THICR Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thiomicrospira
crunogena (strain XCL-2) GN=gatA PE=3 SV=1
Length = 484
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 11 PTDVDTMFTTLRTYQYSAKELSRVIDHDVGSHGMS-GIFFKYNTNALKVIVKETRDSFLN 69
PTD++ ++T R+ + A+ R++ VG++ +S G + Y A K + + RD F+N
Sbjct: 333 PTDLNDLYTRSRSEGFGAEVKRRIM---VGAYALSAGYYDAYYLKAQK-LRRMVRDDFVN 388
Query: 70 FFIRLSGVLGGV 81
F + ++G V
Sbjct: 389 AFEQCDVIVGPV 400
>sp|B3QPY5|MUTS_CHLP8 DNA mismatch repair protein MutS OS=Chlorobaculum parvum (strain
NCIB 8327) GN=mutS PE=3 SV=1
Length = 876
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 8 DVVPTDVDTMFTTLRTYQYSAKELSRVIDHDVGSHGMSGIFF------KYNTNALKVIVK 61
D + ++T+FT L + +SA++ S+V+++ +H + G + A+ ++
Sbjct: 194 DSLAKSMNTLFTVLDEWMFSAEQASQVLENHFKTHSLKGFGIDGVEGGRIAAGAILQYLE 253
Query: 62 ETRDSFLNFFIRL 74
E + L + +R+
Sbjct: 254 EAKQGSLKYLVRI 266
>sp|Q9LJU2|PDI53_ARATH Protein disulfide-isomerase 5-3 OS=Arabidopsis thaliana GN=PDIL5-3
PE=2 SV=1
Length = 483
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 49 FKYNTNALKVIVKETRDSFLNFFIRLSGVLGGVYIVTG 86
F + + +++++ E SF +F L ++GGV+ V G
Sbjct: 424 FHFELSPMQILITENPKSFSHFITNLCAIIGGVFTVAG 461
>sp|Q6NS19|ERGI1_XENLA Endoplasmic reticulum-Golgi intermediate compartment protein 1
OS=Xenopus laevis GN=ergic1 PE=2 SV=1
Length = 290
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 5 YFIDVVPTDVDTMFTTLR-TYQYSAKELSRVIDHDVGSHGMSGIFFKYNTNALKVIVKET 63
Y + +VPT + + + +YQY+ + V G + I+F+Y+ + + V E
Sbjct: 187 YVLKIVPTVYEDLNGKQQFSYQYTVANKAYVAYSHTG-RVVPAIWFRYDLSPITVKYTER 245
Query: 64 RDSFLNFFIRLSGVLGGVYIVTG 86
R F + ++GG + V G
Sbjct: 246 RQPMYRFITTVCAIIGGTFTVAG 268
>sp|Q9T042|PDI54_ARATH Protein disulfide-isomerase 5-4 OS=Arabidopsis thaliana GN=PDIL5-4
PE=2 SV=1
Length = 480
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 49 FKYNTNALKVIVKETRDSFLNFFIRLSGVLGGVYIVTG 86
F + + ++V++ E SF +F + ++GGV+ V G
Sbjct: 421 FHFELSPMQVLITENSKSFSHFITNVCAIIGGVFTVAG 458
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.141 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,147,036
Number of Sequences: 539616
Number of extensions: 1192306
Number of successful extensions: 3668
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3634
Number of HSP's gapped (non-prelim): 28
length of query: 104
length of database: 191,569,459
effective HSP length: 73
effective length of query: 31
effective length of database: 152,177,491
effective search space: 4717502221
effective search space used: 4717502221
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)