Query psy1573
Match_columns 104
No_of_seqs 101 out of 445
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 19:57:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1573.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1573hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lti_A DNA-directed RNA polyme 28.8 18 0.0006 27.4 1.0 19 46-64 34-55 (296)
2 3cx5_I Cytochrome B-C1 complex 28.0 28 0.00097 20.5 1.6 27 74-100 17-43 (65)
3 1pp9_J Ubiquinol-cytochrome C 25.8 33 0.0011 20.0 1.6 29 73-101 20-48 (62)
4 2knc_B Integrin beta-3; transm 19.5 51 0.0017 19.9 1.6 8 75-82 15-22 (79)
5 3r8s_F 50S ribosomal protein L 16.2 98 0.0033 21.5 2.6 25 54-78 82-106 (177)
6 1pfi_A Major coat protein of P 15.7 89 0.0031 17.0 1.8 25 66-94 21-45 (46)
7 2ks1_B Epidermal growth factor 15.7 42 0.0014 18.2 0.5 14 75-88 15-28 (44)
8 1mji_A 50S ribosomal protein L 15.5 94 0.0032 21.7 2.4 25 54-78 86-110 (182)
9 1iq4_A 50S ribosomal protein L 15.3 95 0.0033 21.6 2.4 25 54-78 83-107 (179)
10 2rdc_A Uncharacterized protein 14.9 1.2E+02 0.0041 20.6 2.7 31 71-101 27-57 (153)
No 1
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2, nucleotidyltransferase, transcription, transferase; HET: MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Probab=28.78 E-value=18 Score=27.40 Aligned_cols=19 Identities=21% Similarity=0.482 Sum_probs=8.6
Q ss_pred eEEEEEeccc---eEEEEEeee
Q psy1573 46 GIFFKYNTNA---LKVIVKETR 64 (104)
Q Consensus 46 GIfF~Yd~sP---i~v~~~~~~ 64 (104)
|-++.|++.+ +-|.+...|
T Consensus 34 GsWlefe~d~~d~~~vrIdr~r 55 (296)
T 3lti_A 34 GSWLDFEFDPKDNLFVRIDRRR 55 (296)
T ss_dssp SCCEEEEECTTSCEEEEETTCC
T ss_pred CceEEEEEcCCCeEEEEEcCcc
Confidence 4444454444 344554333
No 2
>3cx5_I Cytochrome B-C1 complex subunit 9; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.14.1 PDB: 3cxh_I* 2ibz_I* 1kyo_I* 1ezv_I* 1kb9_I* 1p84_I*
Probab=28.03 E-value=28 Score=20.47 Aligned_cols=27 Identities=7% Similarity=0.242 Sum_probs=22.4
Q ss_pred HHhhhcceeehhhhhHHHHHHHHHHHh
Q psy1573 74 LSGVLGGVYIVTGTCSISQGALVEYFR 100 (104)
Q Consensus 74 lcaIiGGvf~v~g~id~~~~~~~~~~~ 100 (104)
+.+|++|.|+.-..+|.......+...
T Consensus 17 ~~~I~~gaf~fE~~fd~~~d~iw~~~N 43 (65)
T 3cx5_I 17 VGTIFAGAFVFQTVFDTAITSWYENHN 43 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence 578899999999999999888776654
No 3
>1pp9_J Ubiquinol-cytochrome C reductase complex 7.2 kDa; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.14.1 PDB: 1bgy_J* 1be3_J* 1l0n_J* 1ntk_J* 1ntm_J* 1ntz_J* 1nu1_J* 1l0l_J* 1ppj_J* 1sqb_J* 1sqp_J* 1sqq_J* 1sqv_J* 1sqx_J* 2a06_J* 2fyu_J* 2ybb_J* 1bcc_J* 2bcc_J* 3bcc_J* ...
Probab=25.79 E-value=33 Score=20.00 Aligned_cols=29 Identities=10% Similarity=0.074 Sum_probs=23.5
Q ss_pred HHHhhhcceeehhhhhHHHHHHHHHHHhh
Q psy1573 73 RLSGVLGGVYIVTGTCSISQGALVEYFRA 101 (104)
Q Consensus 73 ~lcaIiGGvf~v~g~id~~~~~~~~~~~k 101 (104)
=+.+|++|.|+.-..+|.......+...|
T Consensus 20 y~~~i~~gaf~fe~~~d~~~d~iw~~~Nk 48 (62)
T 1pp9_J 20 FALTIVVGALFFERAFDQGADAIYEHINE 48 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhccC
Confidence 46788999999999999999888776643
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=19.46 E-value=51 Score=19.86 Aligned_cols=8 Identities=25% Similarity=0.613 Sum_probs=4.4
Q ss_pred Hhhhccee
Q psy1573 75 SGVLGGVY 82 (104)
Q Consensus 75 caIiGGvf 82 (104)
++++||+.
T Consensus 15 ~gvi~gil 22 (79)
T 2knc_B 15 LSVMGAIL 22 (79)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45666653
No 5
>3r8s_F 50S ribosomal protein L5; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_F* 3oat_F* 3ofc_F* 3ofz_F* 3ofr_F 3r8t_F 3i1n_F 1vs8_F 1vs6_F 1vt2_F 3i1p_F 3i1r_F 3i1t_F 3i20_F 3i22_F 3iyx_F 3iyy_F 3izt_G* 3izu_G* 3kcr_F ...
Probab=16.18 E-value=98 Score=21.46 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=22.6
Q ss_pred cceEEEEEeeeccHHHHHHHHHhhh
Q psy1573 54 NALKVIVKETRDSFLNFFIRLSGVL 78 (104)
Q Consensus 54 sPi~v~~~~~~~s~~~flt~lcaIi 78 (104)
.|+.++++-+....++||-+++.++
T Consensus 82 ~piG~kVTLRg~~m~~FL~kli~~v 106 (177)
T 3r8s_F 82 YPIGCKVTLRGERMWEFFERLITIA 106 (177)
T ss_dssp CEEEEEEEECSHHHHHHHHHHHHTT
T ss_pred CEeeEEEEEccHHHHHHHHHHHHHh
Confidence 4999999999999999999998775
No 6
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=15.69 E-value=89 Score=16.95 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=14.3
Q ss_pred cHHHHHHHHHhhhcceeehhhhhHHHHHH
Q psy1573 66 SFLNFFIRLSGVLGGVYIVTGTCSISQGA 94 (104)
Q Consensus 66 s~~~flt~lcaIiGGvf~v~g~id~~~~~ 94 (104)
+....++...+|+ +++|++-+++.+
T Consensus 21 si~~~IVGaLvil----~VAGLiysm~RK 45 (46)
T 1pfi_A 21 AIGGYIVGALVIL----AVAGLIYSMLRK 45 (46)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHhc
Confidence 3444455555444 677877776653
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=15.67 E-value=42 Score=18.18 Aligned_cols=14 Identities=14% Similarity=0.498 Sum_probs=8.4
Q ss_pred Hhhhcceeehhhhh
Q psy1573 75 SGVLGGVYIVTGTC 88 (104)
Q Consensus 75 caIiGGvf~v~g~i 88 (104)
.+++||++.++-++
T Consensus 15 ~gVVgGv~~~~ii~ 28 (44)
T 2ks1_B 15 TGMVGALLLLLVVA 28 (44)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHH
Confidence 35667776655544
No 8
>1mji_A 50S ribosomal protein L5; ribosomal protein - 5S rRNA complex, ribosome; 2.50A {Thermus thermophilus} SCOP: d.77.1.1 PDB: 2hgj_G 2hgq_G 2hgu_G 2j01_G 2j03_G 2jl6_G 2jl8_G 2v47_G 2v49_G 2wdi_G 2wdj_G 2wdl_G 2wdn_G 2wh2_G 2wh4_G 2wrj_G 2wrl_G 2wro_G 2wrr_G 2x9s_G ...
Probab=15.49 E-value=94 Score=21.65 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=22.7
Q ss_pred cceEEEEEeeeccHHHHHHHHHhhh
Q psy1573 54 NALKVIVKETRDSFLNFFIRLSGVL 78 (104)
Q Consensus 54 sPi~v~~~~~~~s~~~flt~lcaIi 78 (104)
.|+.++++-+....++||-+++.++
T Consensus 86 ~pIG~kVTLRg~~my~FL~rll~v~ 110 (182)
T 1mji_A 86 MPIGLRVTLRRDRMWIFLEKLLNVA 110 (182)
T ss_dssp SEEEEEEEECHHHHHHHHHHHHHTT
T ss_pred CeeEEEEEEccHHHHHHHHHHHHHh
Confidence 5899999999999999999999873
No 9
>1iq4_A 50S ribosomal protein L5; rRNA-binding, RNP motif, RNA binding PROT; 1.80A {Geobacillus stearothermophilus} SCOP: d.77.1.1
Probab=15.34 E-value=95 Score=21.56 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=22.7
Q ss_pred cceEEEEEeeeccHHHHHHHHHhhh
Q psy1573 54 NALKVIVKETRDSFLNFFIRLSGVL 78 (104)
Q Consensus 54 sPi~v~~~~~~~s~~~flt~lcaIi 78 (104)
.|+.++++-+....++||-+++.++
T Consensus 83 ~pIG~kVTLRg~~my~FL~rll~v~ 107 (179)
T 1iq4_A 83 MPIGAKVTLRGERMYEFLDKLISVS 107 (179)
T ss_dssp CEEEEEEEECHHHHHHHHHHHHHTT
T ss_pred CeeEEEEEEccHHHHHHHHHHHHHh
Confidence 5899999999999999999999873
No 10
>2rdc_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Geobacter sulfurreducens pca}
Probab=14.86 E-value=1.2e+02 Score=20.63 Aligned_cols=31 Identities=13% Similarity=0.116 Sum_probs=25.3
Q ss_pred HHHHHhhhcceeehhhhhHHHHHHHHHHHhh
Q psy1573 71 FIRLSGVLGGVYIVTGTCSISQGALVEYFRA 101 (104)
Q Consensus 71 lt~lcaIiGGvf~v~g~id~~~~~~~~~~~k 101 (104)
.-++|+++++==.+..++..++++.-+.+.|
T Consensus 27 ~k~v~s~~~~D~v~l~iiE~lids~~~Y~~~ 57 (153)
T 2rdc_A 27 YKKVIEITGHDEVAAKLLEGLIDAGTRYFSK 57 (153)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 3459999999888999999999888776654
Done!