Query psy1573
Match_columns 104
No_of_seqs 101 out of 445
Neff 6.4
Searched_HMMs 13730
Date Fri Aug 16 19:57:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1573.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1573hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vg0a1 c.3.1.3 (A:3-444,A:558 23.1 20 0.0015 26.8 2.3 24 66-89 377-400 (491)
2 d3cx5i1 f.23.14.1 (I:4-58) Sub 22.7 20 0.0014 19.2 1.6 28 74-101 15-42 (55)
3 d1ppjw_ f.23.14.1 (W:) Subunit 19.3 30 0.0022 18.8 1.9 28 73-100 20-47 (62)
4 d1iq4a_ d.77.1.1 (A:) Ribosoma 15.8 43 0.0031 21.5 2.4 25 54-78 83-107 (179)
5 d1a04a2 c.23.1.1 (A:5-142) Nit 15.8 50 0.0037 19.2 2.6 31 54-84 1-31 (138)
6 d1mjia_ d.77.1.1 (A:) Ribosoma 15.7 44 0.0032 21.5 2.4 25 54-78 84-108 (180)
7 d1l9la_ a.64.1.1 (A:) Granulys 14.8 63 0.0046 17.1 2.7 36 65-100 24-61 (74)
8 d1vqod1 d.77.1.1 (D:10-174) Ri 14.0 41 0.003 21.5 1.9 26 54-79 58-83 (165)
9 d2zjrd1 d.77.1.1 (D:3-179) Rib 11.2 29 0.0021 22.3 0.4 25 54-78 81-105 (177)
10 d1q25a2 b.64.1.1 (A:130-280) C 11.0 34 0.0024 20.6 0.6 8 50-57 16-23 (151)
No 1
>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=23.05 E-value=20 Score=26.85 Aligned_cols=24 Identities=25% Similarity=0.613 Sum_probs=17.5
Q ss_pred cHHHHHHHHHhhhcceeehhhhhH
Q psy1573 66 SFLNFFIRLSGVLGGVYIVTGTCS 89 (104)
Q Consensus 66 s~~~flt~lcaIiGGvf~v~g~id 89 (104)
-+-|=+-|+||+-||+|.+-.-++
T Consensus 377 EipQ~FcR~~AV~Gg~Y~L~~~i~ 400 (491)
T d1vg0a1 377 ELPQCFCRMCAVFGGIYCLRHSVQ 400 (491)
T ss_dssp HHHHHHHHHHHHTTCEEESSCCEE
T ss_pred hHHHHHHHHHHhcCcEEEcCCccc
Confidence 456777889999999988754443
No 2
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.70 E-value=20 Score=19.17 Aligned_cols=28 Identities=7% Similarity=0.229 Sum_probs=22.8
Q ss_pred HHhhhcceeehhhhhHHHHHHHHHHHhh
Q psy1573 74 LSGVLGGVYIVTGTCSISQGALVEYFRA 101 (104)
Q Consensus 74 lcaIiGGvf~v~g~id~~~~~~~~~~~k 101 (104)
+.+|++|.|+.=..+|.......+...|
T Consensus 15 ~~tI~~gAf~fe~~fD~~~d~~we~~Nk 42 (55)
T d3cx5i1 15 VGTIFAGAFVFQTVFDTAITSWYENHNK 42 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 5688999999999999998888776643
No 3
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=19.26 E-value=30 Score=18.83 Aligned_cols=28 Identities=11% Similarity=0.076 Sum_probs=23.1
Q ss_pred HHHhhhcceeehhhhhHHHHHHHHHHHh
Q psy1573 73 RLSGVLGGVYIVTGTCSISQGALVEYFR 100 (104)
Q Consensus 73 ~lcaIiGGvf~v~g~id~~~~~~~~~~~ 100 (104)
=+.+|++|.|..=..+|.....+.+...
T Consensus 20 f~~tI~~gAf~fE~~fD~~~d~iwe~~N 47 (62)
T d1ppjw_ 20 FALTIVVGALFFERAFDQGADAIYEHIN 47 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3678999999999999999888877654
No 4
>d1iq4a_ d.77.1.1 (A:) Ribosomal protein L5 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=15.83 E-value=43 Score=21.51 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=22.8
Q ss_pred cceEEEEEeeeccHHHHHHHHHhhh
Q psy1573 54 NALKVIVKETRDSFLNFFIRLSGVL 78 (104)
Q Consensus 54 sPi~v~~~~~~~s~~~flt~lcaIi 78 (104)
.|+.++++-++...++||-+++-++
T Consensus 83 ~piG~kVTLRg~~m~~FL~rli~iv 107 (179)
T d1iq4a_ 83 MPIGAKVTLRGERMYEFLDKLISVS 107 (179)
T ss_dssp CEEEEEEEECHHHHHHHHHHHHHTT
T ss_pred ceeEEEeeeccchHHHHHHHHHHhc
Confidence 5899999999999999999999875
No 5
>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]}
Probab=15.78 E-value=50 Score=19.25 Aligned_cols=31 Identities=6% Similarity=0.117 Sum_probs=26.5
Q ss_pred cceEEEEEeeeccHHHHHHHHHhhhcceeeh
Q psy1573 54 NALKVIVKETRDSFLNFFIRLSGVLGGVYIV 84 (104)
Q Consensus 54 sPi~v~~~~~~~s~~~flt~lcaIiGGvf~v 84 (104)
+|++|.+-++...+..-+.+++.-.|+...+
T Consensus 1 ePi~VLiVDD~~~~r~~l~~~L~~~~~~~~v 31 (138)
T d1a04a2 1 EPATILLIDDHPMLRTGVKQLISMAPDITVV 31 (138)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCCcEEE
Confidence 5999999999999999998888877877655
No 6
>d1mjia_ d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermophilus [TaxId: 274]}
Probab=15.70 E-value=44 Score=21.53 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=22.8
Q ss_pred cceEEEEEeeeccHHHHHHHHHhhh
Q psy1573 54 NALKVIVKETRDSFLNFFIRLSGVL 78 (104)
Q Consensus 54 sPi~v~~~~~~~s~~~flt~lcaIi 78 (104)
.|+..+++-++...++||-+++.++
T Consensus 84 ~piG~kvTLRg~~m~~FL~rli~i~ 108 (180)
T d1mjia_ 84 MPIGLRVTLRRDRMWIFLEKLLNVA 108 (180)
T ss_dssp SEEEEEEEECHHHHHHHHHHHHHTT
T ss_pred CceeEEEeecHHHHHHHHHHHHHHH
Confidence 6899999999999999999999875
No 7
>d1l9la_ a.64.1.1 (A:) Granulysin, NKG5 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.80 E-value=63 Score=17.09 Aligned_cols=36 Identities=11% Similarity=-0.030 Sum_probs=27.9
Q ss_pred ccHHHHHHHHHhhhcceee--hhhhhHHHHHHHHHHHh
Q psy1573 65 DSFLNFFIRLSGVLGGVYI--VTGTCSISQGALVEYFR 100 (104)
Q Consensus 65 ~s~~~flt~lcaIiGGvf~--v~g~id~~~~~~~~~~~ 100 (104)
..+.+.+-++|..+++-+. |-.++|.....+++.+.
T Consensus 24 ~~I~~~l~~~C~~lp~~~~~~C~~lv~~Y~~~ii~~l~ 61 (74)
T d1l9la_ 24 RSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVIQGLV 61 (74)
T ss_dssp HHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999998653 77888887777766553
No 8
>d1vqod1 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=14.04 E-value=41 Score=21.51 Aligned_cols=26 Identities=8% Similarity=0.019 Sum_probs=23.1
Q ss_pred cceEEEEEeeeccHHHHHHHHHhhhc
Q psy1573 54 NALKVIVKETRDSFLNFFIRLSGVLG 79 (104)
Q Consensus 54 sPi~v~~~~~~~s~~~flt~lcaIiG 79 (104)
.|+.+++|-+....++||-+++.+++
T Consensus 58 ~piG~kVTLRg~~m~~FL~rll~~~~ 83 (165)
T d1vqod1 58 DPIGAKVTLRDEMAEEFLQTALPLAE 83 (165)
T ss_dssp SEEEEEEEECTHHHHHHHHTTGGGSC
T ss_pred CeEEEEEEEechhHHHHHHHHhcccc
Confidence 58899999988999999999998774
No 9
>d2zjrd1 d.77.1.1 (D:3-179) Ribosomal protein L5 {Deinococcus radiodurans [TaxId: 1299]}
Probab=11.21 E-value=29 Score=22.33 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=21.6
Q ss_pred cceEEEEEeeeccHHHHHHHHHhhh
Q psy1573 54 NALKVIVKETRDSFLNFFIRLSGVL 78 (104)
Q Consensus 54 sPi~v~~~~~~~s~~~flt~lcaIi 78 (104)
.|+.++++-+....++||-+|+-++
T Consensus 81 ~piG~kvTLRg~~my~FL~kli~~v 105 (177)
T d2zjrd1 81 MPVGIKVTLRGERMYVFLEKLINIG 105 (177)
T ss_dssp CCCCCBCEECSHHHHHHHHHHHHTT
T ss_pred CcEEEEEEeccchHHHHHHHHHHhh
Confidence 3688899999999999999998874
No 10
>d1q25a2 b.64.1.1 (A:130-280) Cation-independent mannose-6-phosphate receptor (MIR-receptor) {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.97 E-value=34 Score=20.55 Aligned_cols=8 Identities=38% Similarity=0.330 Sum_probs=7.1
Q ss_pred EEeccceE
Q psy1573 50 KYNTNALK 57 (104)
Q Consensus 50 ~Yd~sPi~ 57 (104)
.|||+|++
T Consensus 16 ~fDLspL~ 23 (151)
T d1q25a2 16 KHDLNPLI 23 (151)
T ss_dssp EEECGGGC
T ss_pred EEeCchhh
Confidence 79999994
Done!