RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1573
(104 letters)
>gnl|CDD|219673 pfam07970, COPIIcoated_ERV, Endoplasmic reticulum vesicle
transporter. This family is conserved from plants and
fungi to humans. Erv46 works in close conjunction with
Erv41 and together they form a complex which cycles
between the endoplasmic reticulum and Golgi complex.
Erv46-41 interacts strongly with the endoplasmic
reticulum glucosidase II. Mammalian glucosidase II
comprises a catalytic alpha-subunit and a 58 kDa beta
subunit, which is required for ER localisation. All
proteins identified biochemically as Erv41p-Erv46p
interactors are localised to the early secretory pathway
and are involved in protein maturation and processing in
the ER and/or sorting into COPII vesicles for transport
to the Golgi.
Length = 222
Score = 72.3 bits (178), Expect = 5e-17
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 1 MLFQYFIDVVPTD-VDTMFTTLRTYQYSAKELSRVIDHDVGSHGMSGIFFKYNTNALKVI 59
++ YF+ VVPT + T QYS R + G+ G+FF Y+ + +KVI
Sbjct: 134 HMYSYFLKVVPTRYESLNGLIVETNQYSVTSHDRPV-TGGSRGGVPGVFFNYDFSPIKVI 192
Query: 60 VKETRDSFLNFFIRLSGVLGGVYIVTG 86
E R SF +F L ++GGV+ V G
Sbjct: 193 NTEDRQSFSHFLTNLCAIIGGVFAVAG 219
>gnl|CDD|185134 PRK15212, PRK15212, virulence protein SpvA; Provisional.
Length = 255
Score = 26.7 bits (58), Expect = 2.4
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 45 SGIFFKYNTNALKVIVKETRDSFLNFFIRLSGVLGG 80
+G F KYN ++ IV++TR F+N + G GG
Sbjct: 22 AGNFAKYNYYSVFDIVRQTRKQFINANMSWPGSRGG 57
>gnl|CDD|218300 pfam04870, Moulting_cycle, Moulting cycle. This family of proteins
plays a role in the moulting cycle of nematodes, which
involves the synthesis of a new collagen-rich cuticle
underneath the existing cuticle and the subsequent
removal of the old cuticle.
Length = 323
Score = 26.7 bits (59), Expect = 2.6
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 53 TNALKVIVKET-RDSFLNFFIRLSGVLGGV 81
L ++++ DSFL+ + SGV V
Sbjct: 171 PKLLGSLMEDKDTDSFLDLVMEASGVAEAV 200
>gnl|CDD|107369 cd06374, PBP1_mGluR_groupI, Ligand binding domain of the group I
metabotropic glutamate receptor. Ligand binding domain
of the group I metabotropic glutamate receptor, a family
containing mGlu1R and mGlu5R, all of which stimulate
phospholipase C (PLC) hydrolysis. The metabotropic
glutamate receptor is a member of the family C of
G-protein-coupled receptors that transduce extracellular
signals into G-protein activation and ultimately into
intracellular responses. The mGluRs are classified into
three groups which comprise eight subtypes.
Length = 472
Score = 26.8 bits (59), Expect = 2.7
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 7/49 (14%)
Query: 2 LFQYFIDVVPTDV---DTMFTTLRTYQYSAKELSRVIDHDVGSHGMSGI 47
LF+YF+ VVP+D M ++ Y ++ +S V H G++G SG+
Sbjct: 159 LFKYFLRVVPSDTLQARAMLDIVKRYNWTY--VSAV--HTEGNYGESGM 203
>gnl|CDD|235976 PRK07232, PRK07232, bifunctional malic enzyme
oxidoreductase/phosphotransacetylase; Reviewed.
Length = 752
Score = 26.2 bits (59), Expect = 3.8
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
Query: 13 DVDTMFT-TLRTYQYSAKELSRVIDHDVGSH---GMSGIFFK 50
D D M Y + + +VI G H M+ + K
Sbjct: 545 DADAMICGLTGRYHEHLRPVRQVIGLRPGVHTAAAMNALLLK 586
>gnl|CDD|226455 COG3946, VirJ, Type IV secretory pathway, VirJ component
[Intracellular trafficking and secretion].
Length = 456
Score = 25.9 bits (57), Expect = 4.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 7 IDVVPTDVDTMFTTLRTYQYSAKELSRVIDH 37
+ VV D F + RT + A +LSR+I
Sbjct: 288 VPVVGVDSLRYFWSERTPEQIAADLSRLIRF 318
>gnl|CDD|114761 pfam06057, VirJ, Bacterial virulence protein (VirJ). This family
consists of several bacterial VirJ virulence proteins.
VirJ is thought to be involved in the type IV secretion
system. It is thought that the substrate proteins
localised to the periplasm may associate with the pilus
in a manner that is mediated by VirJ, and suggest a
two-step process for type IV secretion in
Agrobacterium.
Length = 192
Score = 25.8 bits (57), Expect = 4.3
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 14 VDTM--FTTLRTYQYSAKELSRVIDH 37
VD++ F + RT + A +L R+ID
Sbjct: 35 VDSLRYFWSERTPEEVADDLDRIIDT 60
>gnl|CDD|205290 pfam13109, AsmA_1, AsmA-like C-terminal region. This family is
similar to the C-terminal of the AsmA protein of E.
coli.
Length = 214
Score = 25.6 bits (57), Expect = 4.5
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 40 GSHGMSGIFFKYNTNALKVIVKETRDSFLNFFIRLSGVLGGVY 82
G + F N+L + K D FLN + GG +
Sbjct: 7 GKYKNGKANFYKKNNSLYLEAKNFSDEFLNTLLNKDFFSGGRF 49
>gnl|CDD|188999 cd06461, M2_ACE, Peptidase family M2 Angiotensin converting enzyme
(ACE). Peptidase family M2 Angiotensin converting
enzyme (ACE, EC 3.4.15.1) is a membrane-bound, zinc
dependent dipeptidase that catalyzes the conversion of
the decapeptide angiotensin I to the potent vasopressor
octapeptide angiotensin II, by removing two C-terminal
amino acids. There are two forms of the enzyme in
humans, the ubiquitous somatic ACE and the
sperm-specific germinal ACE, both encoded by the same
gene through transcription from alternative promoters.
Somatic ACE has two tandem active sites with distinct
catalytic properties, whereas germinal ACE, the function
of which is largely unknown, has just a single active
site. Recently, an ACE homolog, ACE2, has been
identified in humans that differs from ACE; it
preferentially removes carboxy-terminal hydrophobic or
basic amino acids and appears to be important in cardiac
function. ACE homologs (also known as members of the M2
gluzincin family) have been found in a wide variety of
species, including those that neither have a
cardiovascular system nor synthesize angiotensin. ACE is
well-known as a key part of the renin-angiotensin system
that regulates blood pressure and ACE inhibitors are
important for the treatment of hypertension.
Length = 562
Score = 25.6 bits (57), Expect = 5.0
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 83 IVTGTCSISQGALVEYFR 100
+TG + AL+EYF
Sbjct: 535 ALTGEREMDASALLEYFE 552
>gnl|CDD|240110 cd04793, LanC, LanC is the cyclase enzyme of the lanthionine
synthetase. Lanthinoine is a lantibiotic, a unique class
of peptide antibiotics. They are ribosomally synthesized
as precursor peptides and then post-translationally
modified to contain thioether cross-links called
lanthionines (Lans) or methyllanthionines (MeLans) in
addition to 2,3-didehydroalanine (Dha) and
(Z)-2,3-didehydrobutyrine (Dhb). These unusual amino
acids are introduced by the dehydration of serine and
threonine residues, followed by thioether formation via
addition of cysteine thiols, catalysed by LanB and LanC
or LanM. LanC, the cyclase component, is a zinc
metalloprotein, whose bound metal has been proposed to
activate the thiol substrate for nucleophilic addition.
Length = 382
Score = 25.8 bits (57), Expect = 5.3
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 29 KELSRVIDHDVGSHGMSGIFF-------KYNTNALKVIVKETRDSFLNFFIRLSGVLGGV 81
K+LS++I + HG++G+ F NTN K ++ + ++ + G
Sbjct: 281 KQLSKLISPTL-CHGLAGLLFIFYLLYKDTNTNEFKSALEYLLNQIISSY-SEEEPFGFK 338
Query: 82 YIVTGTCSISQG 93
I T SI
Sbjct: 339 DIEETTGSIEWL 350
>gnl|CDD|148201 pfam06450, NhaB, Bacterial Na+/H+ antiporter B (NhaB). This family
consists of several bacterial Na+/H+ antiporter B (NhaB)
proteins. The exact function of this family is unknown.
Length = 515
Score = 25.6 bits (56), Expect = 6.6
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 58 VIVKETRDSFLNFFIRLSGVLGGVYIVTGTCSISQGALVEYFR 100
+I ++ +F FF+R+S V V+I C + LVE FR
Sbjct: 229 IIAEQAGWNFGEFFLRMSPVTVPVFI----CGLLTCFLVEKFR 267
>gnl|CDD|178061 PLN02442, PLN02442, S-formylglutathione hydrolase.
Length = 283
Score = 25.1 bits (55), Expect = 8.6
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 16/53 (30%)
Query: 22 RTYQYSAKELSRVID---------------HDVGSHGMSGIFFKYNTNALKVI 59
R Y Y KEL +++ H +G HG I+ K N + K +
Sbjct: 120 RMYDYVVKELPKLLSDNFDQLDTSRASIFGHSMGGHGALTIYLK-NPDKYKSV 171
>gnl|CDD|216213 pfam00956, NAP, Nucleosome assembly protein (NAP). NAP proteins
are involved in moving histones into the nucleus,
nucleosome assembly and chromatin fluidity. They affect
the transcription of many genes.
Length = 236
Score = 25.0 bits (55), Expect = 9.4
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 52 NTNALKVIVKET-RDSFLNFF 71
T + I K +SF NFF
Sbjct: 170 KTGQTRTITKTVPAESFFNFF 190
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.141 0.407
Gapped
Lambda K H
0.267 0.0787 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,307,037
Number of extensions: 453369
Number of successful extensions: 553
Number of sequences better than 10.0: 1
Number of HSP's gapped: 552
Number of HSP's successfully gapped: 19
Length of query: 104
Length of database: 10,937,602
Length adjustment: 69
Effective length of query: 35
Effective length of database: 7,877,176
Effective search space: 275701160
Effective search space used: 275701160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.1 bits)