RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1573
         (104 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.8 bits (69), Expect = 0.069
 Identities = 12/94 (12%), Positives = 27/94 (28%), Gaps = 33/94 (35%)

Query: 11  PTDVDTMFTTLRTYQYSAKELSRVIDHDVGSHGMSGIFFKYNTNALKVIVKETRDSFLNF 70
            T +      ++ Y  +A+ +++           S +F        +++           
Sbjct: 113 DTTLVKTKELIKNY-ITARIMAK---RPFDKKSNSALFRAVGEGNAQLVA---------- 158

Query: 71  FIRLSGVLGGVYIVTGTCSISQGALVEYFRAMEM 104
                 + GG           QG   +YF   E+
Sbjct: 159 ------IFGG-----------QGNTDDYFE--EL 173



 Score = 25.4 bits (55), Expect = 4.2
 Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 8/42 (19%)

Query: 24  YQYSAKELSRVIDHDVGSHGMSGIFFKYNTNALKVIVKETRD 65
               A +L   I+ D+  +        +N   +++ V +T D
Sbjct: 431 LLVPASDL---INKDLVKNN-----VSFNAKDIQIPVYDTFD 464


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 30.2 bits (67), Expect = 0.11
 Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 28/107 (26%)

Query: 2   LFQYFIDVVPTDVDT----------MFTTLRTYQYSAKELSRVIDHDVGSHGMSGIFFKY 51
           ++    D +  D              +  LR    +  EL      +V   G+ G   K 
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ---ALLELRP--AKNVLIDGVLG-SGK- 163

Query: 52  NTNALKVIVKETRDSFLNFFIRLSGVLGGVYIVT-GTCSISQGALVE 97
              AL V +       ++F          ++ +    C+ S   ++E
Sbjct: 164 TWVALDVCLSYKVQCKMDF---------KIFWLNLKNCN-SPETVLE 200



 Score = 26.0 bits (56), Expect = 2.9
 Identities = 8/67 (11%), Positives = 21/67 (31%), Gaps = 17/67 (25%)

Query: 7   IDVVPTDVDTMFTTLRTY-QYSAKELSRVIDHDVGSHGMSGIFFKYNTNALKVIVKETRD 65
           + ++   +     T   +   +  +L+ +I+  +              N L+    E R 
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL--------------NVLEP--AEYRK 373

Query: 66  SFLNFFI 72
            F    +
Sbjct: 374 MFDRLSV 380


>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of
           PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens}
           SCOP: c.79.1.1 PDB: 1m54_A*
          Length = 435

 Score = 24.6 bits (54), Expect = 6.7
 Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 6/58 (10%)

Query: 35  IDHDVGSHG----MSGI--FFKYNTNALKVIVKETRDSFLNFFIRLSGVLGGVYIVTG 86
           +D  V S G    ++GI    K      ++I  +   S L     L+      Y V G
Sbjct: 270 LDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEG 327


>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA),
           exonuclease, transferase, transferase/DNA complex; HET:
           US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1
           PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A*
           2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
          Length = 605

 Score = 24.8 bits (55), Expect = 7.0
 Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 12/51 (23%)

Query: 1   MLFQYFIDVVPTDVDTMFTTLRTYQYSAKELSRVIDHDVGSHGMSGIFFKY 51
           +L  Y I++     DTM              S +++   G H M  +  ++
Sbjct: 104 ILANYGIELRGIAFDTML------------ESYILNSVAGRHDMDSLAERW 142


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.327    0.141    0.407 

Gapped
Lambda     K      H
   0.267   0.0718    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,601,833
Number of extensions: 83395
Number of successful extensions: 225
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 10
Length of query: 104
Length of database: 6,701,793
Length adjustment: 69
Effective length of query: 35
Effective length of database: 4,775,244
Effective search space: 167133540
Effective search space used: 167133540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.4 bits)