RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1573
         (104 letters)



>d3cdda2 b.106.1.1 (A:2-180) Baseplate protein gpP {Shewanella
           oneidensis [TaxId: 70863]}
          Length = 179

 Score = 26.2 bits (57), Expect = 0.71
 Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 5/86 (5%)

Query: 11  PTDVDTMFTTLRTYQYSAKELSRVIDHDVGSHGMSGIFFKYNTNALKVIVKETRDSFLNF 70
             D+        + Q++ + L+++ D      G+  I         + I  E  ++    
Sbjct: 96  TADLVDCSIDYPSGQFNNQTLTQIADIVCKPFGIKVIVNTDVGEPFQRIQIEQGETPHEL 155

Query: 71  FIRLSGVLGGVYIVTGTCSISQGALV 96
             RL+   G +           G LV
Sbjct: 156 LARLAKQRGVLLTSDT-----FGNLV 176


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.141    0.407 

Gapped
Lambda     K      H
   0.267   0.0518    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 382,335
Number of extensions: 15232
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 3
Length of query: 104
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 39
Effective length of database: 1,515,146
Effective search space: 59090694
Effective search space used: 59090694
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.4 bits)