BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15732
(550 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 62.8 bits (151), Expect = 5e-10, Method: Composition-based stats.
Identities = 35/86 (40%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 456 DSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCGR 515
DS D+ER+ EA EL QD+P IT+ L+ L R
Sbjct: 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-HR 134
Query: 516 SWHIQACNAQSGEGLHEGLDWLSRQL 541
+W+IQA A SG+GL+EGLDWLS QL
Sbjct: 135 NWYIQATCATSGDGLYEGLDWLSNQL 160
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 62.8 bits (151), Expect = 5e-10, Method: Composition-based stats.
Identities = 35/86 (40%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 456 DSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCGR 515
DS D+ER+ EA EL QD+P IT+ L+ L R
Sbjct: 78 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-HR 136
Query: 516 SWHIQACNAQSGEGLHEGLDWLSRQL 541
+W+IQA A SG+GL+EGLDWLS QL
Sbjct: 137 NWYIQATCATSGDGLYEGLDWLSNQL 162
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 62.8 bits (151), Expect = 5e-10, Method: Composition-based stats.
Identities = 35/86 (40%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 456 DSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCGR 515
DS D+ER+ EA EL QD+P IT+ L+ L R
Sbjct: 92 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-HR 150
Query: 516 SWHIQACNAQSGEGLHEGLDWLSRQL 541
+W+IQA A SG+GL+EGLDWLS QL
Sbjct: 151 NWYIQATCATSGDGLYEGLDWLSNQL 176
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 62.8 bits (151), Expect = 5e-10, Method: Composition-based stats.
Identities = 35/86 (40%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 456 DSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCGR 515
DS D+ER+ EA EL QD+P IT+ L+ L R
Sbjct: 93 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-HR 151
Query: 516 SWHIQACNAQSGEGLHEGLDWLSRQL 541
+W+IQA A SG+GL+EGLDWLS QL
Sbjct: 152 NWYIQATCATSGDGLYEGLDWLSNQL 177
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 456 DSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCGR 515
DS D+ER+ EA EL QD+P IT+ L+ L R
Sbjct: 241 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH-R 299
Query: 516 SWHIQACNAQSGEGLHEGLDWLSRQL 541
+W+IQA A SG+GL+EGLDWLS QL
Sbjct: 300 NWYIQATCATSGDGLYEGLDWLSNQL 325
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 56.2 bits (134), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 456 DSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCGR 515
DS D+ER+ E EL QD+P + +T+ L L R
Sbjct: 93 DSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLR-NR 151
Query: 516 SWHIQACNAQSGEGLHEGLDWLSRQL 541
+W++QA A G GL+EGLDWLS +L
Sbjct: 152 TWYVQATCATQGTGLYEGLDWLSNEL 177
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 456 DSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCGR 515
DS D++R+ EA EL QD+P IT+ L+ L R
Sbjct: 96 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ-R 154
Query: 516 SWHIQACNAQSGEGLHEGLDWLSRQL 541
W+IQ+ A SGEGL+EGLDWLS +
Sbjct: 155 HWYIQSTCATSGEGLYEGLDWLSNNI 180
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 455 ADSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCG 514
DS D+ER+ E+ EL QD+P V +T+ L L
Sbjct: 104 VDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRS- 162
Query: 515 RSWHIQACNAQSGEGLHEGLDWLSRQL 541
R+W++QA A G GL++GLDWLS +L
Sbjct: 163 RTWYVQATCATQGTGLYDGLDWLSHEL 189
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 456 DSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCGR 515
DS D+ R+ EA + QD+P + ITE L+ + R
Sbjct: 76 DSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIR-NR 134
Query: 516 SWHIQACNAQSGEGLHEGLDWLSRQL 541
W IQA A SGEGL+EGL+WLS L
Sbjct: 135 PWFIQATCATSGEGLYEGLEWLSNSL 160
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 456 DSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCGR 515
DS D+ R+ EA + QD+P + ITE L+ + R
Sbjct: 93 DSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIR-NR 151
Query: 516 SWHIQACNAQSGEGLHEGLDWLSRQL 541
W IQA A SGEGL+EGL+WLS L
Sbjct: 152 PWFIQATCATSGEGLYEGLEWLSNSL 177
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 456 DSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCGR 515
DS D+ER+ EL QD+ C TV I++ L +
Sbjct: 92 DSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIK-DH 150
Query: 516 SWHIQACNAQSGEGLHEGLDWLSRQL 541
WHIQAC A +GEGL +GL+W+ +L
Sbjct: 151 QWHIQACCALTGEGLCQGLEWMMSRL 176
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 456 DSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCGR 515
DS D+ R+ EA + QD+P + ITE L+ + R
Sbjct: 93 DSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIR-NR 151
Query: 516 SWHIQACNAQSGEGLHEGLDWLSRQL 541
W IQ+ A SGEGL+EGL+WLS L
Sbjct: 152 PWFIQSTCATSGEGLYEGLEWLSNNL 177
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 456 DSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCGR 515
DS D+ER+ +A EL QD+P + +TE L + R
Sbjct: 93 DSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIR-ER 151
Query: 516 SWHIQACNAQSGEGLHEGLDWLSRQL 541
+W IQ+ A G+GL+EG DWL+ L
Sbjct: 152 NWFIQSTCATRGDGLYEGFDWLTTHL 177
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 456 DSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCGR 515
DS DK+R+ A EL QD PG + +++ +L +L R
Sbjct: 94 DSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELK-DR 152
Query: 516 SWHIQACNAQSGEGLHEGLDWL 537
SW I A +A GEG+ EGLDWL
Sbjct: 153 SWSIVASSAIKGEGITEGLDWL 174
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 456 DSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCGR 515
DS D++R+ EA EL D+P ++ +TE L + R
Sbjct: 93 DSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQAMSISEVTEKLGLQTIK-NR 151
Query: 516 SWHIQACNAQSGEGLHEGLDWLSRQL 541
W+ Q A +G+GL+EGLDWL+ L
Sbjct: 152 KWYCQTSCATNGDGLYEGLDWLADNL 177
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 455 ADSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCG 514
DS D+ER+ EL QD+ C TV I++ L +
Sbjct: 91 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIK-D 149
Query: 515 RSWHIQACNAQSGEGLHEGLDWLSRQL 541
WHIQAC A +GEGL +GL+W+ +L
Sbjct: 150 HQWHIQACCALTGEGLCQGLEWMMSRL 176
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 455 ADSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCG 514
DS D+ER+ EL QD+ C TV I++ L +
Sbjct: 97 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIK-D 155
Query: 515 RSWHIQACNAQSGEGLHEGLDWLSRQL 541
WHIQAC A +GEGL +GL+W+ +L
Sbjct: 156 HQWHIQACCALTGEGLCQGLEWMMSRL 182
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 455 ADSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCG 514
DS D+ R+ EA + QD+P + ITE L+ +
Sbjct: 92 VDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQDLPEAMSAAEITEKLGLHSIR-N 150
Query: 515 RSWHIQACNAQSGEGLHEGLDWLS 538
R W IQA A SGEGL+EGL+WLS
Sbjct: 151 RPWFIQATCATSGEGLYEGLEWLS 174
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 455 ADSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCG 514
DS D+ER+ EL QD+ C TV I++ L +
Sbjct: 96 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIK-D 154
Query: 515 RSWHIQACNAQSGEGLHEGLDWLSRQL 541
WHIQAC A +GEGL +GL+W+ +L
Sbjct: 155 HQWHIQACCALTGEGLCQGLEWMMSRL 181
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 455 ADSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCG 514
DS D+ERL EL QD+ GC T I++ L +
Sbjct: 91 VDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSSIK-D 149
Query: 515 RSWHIQACNAQSGEGLHEGLDWLSRQL 541
WHIQ+C A +GEGL +GL+W++ ++
Sbjct: 150 HPWHIQSCCALTGEGLCQGLEWMTSRI 176
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 456 DSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCGR 515
D AD++R+ EA EL QD+P I E L ++ R
Sbjct: 76 DCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDAXKPHEIQEKLGLTRIR-DR 134
Query: 516 SWHIQACNAQSGEGLHEGLDWLS 538
+W++Q A SG+GL+EGL WL+
Sbjct: 135 NWYVQPSCATSGDGLYEGLTWLT 157
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 455 ADSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCG 514
DSAD++R+ + EL QD+PG + +I EA +L +
Sbjct: 93 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALELDSI--- 149
Query: 515 RS--WHIQACNAQSGEGLHEGLDWL 537
RS W IQ C+A +GE L G+DWL
Sbjct: 150 RSHHWRIQGCSAVTGEDLLPGIDWL 174
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 456 DSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCGR 515
D AD++R+ EA EL QD+P I E L ++ R
Sbjct: 89 DCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIR-DR 147
Query: 516 SWHIQACNAQSGEGLHEGLDWLS 538
+W++Q A SG+GL+EGL WL+
Sbjct: 148 NWYVQPSCATSGDGLYEGLTWLT 170
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 456 DSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCGR 515
D AD++R+ EA EL QD+P I E L ++ R
Sbjct: 76 DCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIR-DR 134
Query: 516 SWHIQACNAQSGEGLHEGLDWLS 538
+W++Q A SG+GL+EGL WL+
Sbjct: 135 NWYVQPSCATSGDGLYEGLTWLT 157
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 456 DSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCGR 515
D AD++R+ EA EL QD+P I E L ++ R
Sbjct: 89 DCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIR-DR 147
Query: 516 SWHIQACNAQSGEGLHEGLDWLS 538
+W++Q A SG+GL+EGL WL+
Sbjct: 148 NWYVQPSCATSGDGLYEGLTWLT 170
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 455 ADSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCG 514
DSAD++R+ + EL QD+PG + +I EA +L +
Sbjct: 93 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSI--- 149
Query: 515 RS--WHIQACNAQSGEGLHEGLDWL 537
RS W IQ C+A +GE L G+DWL
Sbjct: 150 RSHHWRIQGCSAVTGEDLLPGIDWL 174
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 455 ADSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCG 514
DSAD++R+ + EL QD+PG + +I EA +L +
Sbjct: 76 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSI--- 132
Query: 515 RS--WHIQACNAQSGEGLHEGLDWL 537
RS W IQ C+A +GE L G+DWL
Sbjct: 133 RSHHWRIQGCSAVTGEDLLPGIDWL 157
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 455 ADSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCG 514
D AD++R+ EA EL QD+P I E L ++
Sbjct: 75 VDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIR-D 133
Query: 515 RSWHIQACNAQSGEGLHEGLDWLS 538
R+W++Q A SG+GL+EGL WL+
Sbjct: 134 RNWYVQPSCATSGDGLYEGLTWLT 157
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 455 ADSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCG 514
D AD++R+ EA EL QD+P I E L ++
Sbjct: 77 VDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIR-D 135
Query: 515 RSWHIQACNAQSGEGLHEGLDWLS 538
R+W++Q A SG+GL+EGL WL+
Sbjct: 136 RNWYVQPSCATSGDGLYEGLTWLT 159
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 455 ADSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCG 514
D AD++R+ EA EL QD+P I E L ++
Sbjct: 78 VDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIR-D 136
Query: 515 RSWHIQACNAQSGEGLHEGLDWLS 538
R+W++Q A SG+GL+EGL WL+
Sbjct: 137 RNWYVQPSCATSGDGLYEGLTWLT 160
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 456 DSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCGR 515
DSAD++R + EL QD+PG + +I EA +L +
Sbjct: 94 DSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALELDSIRS-H 152
Query: 516 SWHIQACNAQSGEGLHEGLDWL 537
W IQ C+A +GE L G+DWL
Sbjct: 153 HWRIQGCSAVTGEDLLPGIDWL 174
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 455 ADSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCG 514
D AD++R+ EA EL QD+P I E L ++
Sbjct: 87 VDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIR-D 145
Query: 515 RSWHIQACNAQSGEGLHEGLDWLS 538
R+W++Q A SG+GL+EGL WL+
Sbjct: 146 RNWYVQPSCATSGDGLYEGLTWLT 169
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 456 DSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCGR 515
D AD++R+ EA EL QD+P I E L ++ R
Sbjct: 398 DCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIR-DR 456
Query: 516 SWHIQACNAQSGEGLHEGLDWLS 538
+W++Q A SG+GL+EGL WL+
Sbjct: 457 NWYVQPSCATSGDGLYEGLTWLT 479
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 455 ADSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCG 514
DSAD++R+ + EL QD+PG + +I E +L +
Sbjct: 91 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSSNAIREVLELDSI--- 147
Query: 515 RS--WHIQACNAQSGEGLHEGLDWL 537
RS W IQ C+A +GE L G+DWL
Sbjct: 148 RSHHWCIQGCSAVTGENLLPGIDWL 172
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 456 DSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCGR 515
DS D++R+ A EL QD+P + I E + + R
Sbjct: 98 DSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIM-NR 156
Query: 516 SWHIQACNAQSGEGLHEGLDWLSRQLIAAGVN 547
+W I ++++G+GL EG+DWL +L G+
Sbjct: 157 TWTIVKSSSKTGDGLVEGMDWLVERLREQGLG 188
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 456 DSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCGR 515
DSAD++R E ELT QD+ I E +L+ + R
Sbjct: 93 DSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIR-DR 151
Query: 516 SWHIQACNAQSGEGLHEGLDWLSRQLIA 543
W IQ+C+A +GEG+ +G++W+ + + A
Sbjct: 152 VWQIQSCSALTGEGVQDGMNWVCKNVNA 179
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 456 DSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCGR 515
DSAD++R E ELT QD+ I E +L+ + R
Sbjct: 92 DSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIR-DR 150
Query: 516 SWHIQACNAQSGEGLHEGLDWLSRQLIA 543
W IQ+C+A +GEG+ +G++W+ + + A
Sbjct: 151 VWQIQSCSALTGEGVQDGMNWVCKNVNA 178
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 456 DSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCGR 515
DSAD++R E ELT QD+ I E +L+ + R
Sbjct: 80 DSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIR-DR 138
Query: 516 SWHIQACNAQSGEGLHEGLDWLSRQL 541
W IQ+C+A +GEG+ +G++W+ + +
Sbjct: 139 VWQIQSCSALTGEGVQDGMNWVCKNV 164
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 456 DSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCGR 515
DSAD++R E ELT QD+ I E +L+ + R
Sbjct: 80 DSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIR-DR 138
Query: 516 SWHIQACNAQSGEGLHEGLDWLSRQL 541
W IQ+C+A +GEG+ +G++W+ + +
Sbjct: 139 VWQIQSCSALTGEGVQDGMNWVCKNV 164
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 68 CRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKD-DTITCPFDRQPTPVGYSGVWGL 126
C +C + F T+ P+LLHCGHT+C CL +L + + CPF + T + + + L
Sbjct: 18 CPICMESF-TEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI--TSLTQL 74
Query: 127 KKNFALLE 134
N +L+
Sbjct: 75 TDNLTVLK 82
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 515 RSWHIQACNAQSGEGLHEGLDWLSRQL 541
+ WHI A +A GEGL EG+DWL Q+
Sbjct: 159 KPWHICASDAIKGEGLQEGVDWLQDQI 185
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 492 DIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWL----SRQLIAAG 545
D G +T + E DL L + I A N G G+HEG WL SRQ AG
Sbjct: 138 DAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQSGKAG 195
>pdb|2JUN|A Chain A, Structure Of The Mid1 Tandem B-Boxes Reveals An
Interaction Reminiscent Of Intermolecular Ring
Heterodimers
Length = 101
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 22/103 (21%)
Query: 171 CDEDESHIAVLYCTVCASHLCEQCASDSHATRT-LQKHRRIPLSEKPREKPFCSSHPTNI 229
CD+D + AV C C C++C +H + HR I +P SH I
Sbjct: 9 CDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI--------EPIPDSH---I 57
Query: 230 AEFICLEE-------HCQTSAQYPPLMCFICKDYGRHKTHKHA 265
+CLE +C T Q L+C +CK GRH+ H+ A
Sbjct: 58 RGLMCLEHEDEKVNMYCVTDDQ---LICALCKLVGRHRDHQVA 97
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Query: 456 DSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCGR 515
DS D++R+ + +EL QD+ T + A L L R
Sbjct: 78 DSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALK-DR 136
Query: 516 SWHIQACNAQSGEGLHEGLDWLSRQL 541
W I +A G GL E ++WL L
Sbjct: 137 KWQIFKTSATKGTGLDEAMEWLVETL 162
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 33.1 bits (74), Expect = 0.46, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Query: 456 DSADKERLPEALAELTXXXXXXXXXXXXXXXXXXXQDIPGCETVESITEAFDLYKLCCGR 515
DS D++R+ + +EL QD+ T + + L L R
Sbjct: 80 DSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALK-DR 138
Query: 516 SWHIQACNAQSGEGLHEGLDWLSRQL 541
W I +A G GL E ++WL L
Sbjct: 139 KWQIFKTSATKGTGLDEAMEWLVETL 164
>pdb|3EJM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Gdp
pdb|3EJM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Gdp
pdb|3EVO|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Dtdp
pdb|3EVO|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Dtdp
Length = 146
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 10/50 (20%)
Query: 303 VSKIEGNTGPSGTEPGT--GDQARAKVHAYFNHLRESLLVQEAAATSAVD 350
+ +++GNT P + PGT GD A N +RE+L+ + SAVD
Sbjct: 90 IRRLQGNTNPLASAPGTIRGDLA--------NDIRENLIHASDSEDSAVD 131
>pdb|3EM1|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Dtdp
pdb|3EM1|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Dtdp
pdb|3G2X|A Chain A, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|B Chain B, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|C Chain C, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|D Chain D, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|E Chain E, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|F Chain F, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3FC9|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|C Chain C, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|D Chain D, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|E Chain E, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|F Chain F, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
Length = 146
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 10/50 (20%)
Query: 303 VSKIEGNTGPSGTEPGT--GDQARAKVHAYFNHLRESLLVQEAAATSAVD 350
+ +++GNT P + PGT GD A N +RE+L+ + SAVD
Sbjct: 90 IRRLQGNTNPLASAPGTIRGDLA--------NDIRENLIHASDSEDSAVD 131
>pdb|1BOR|A Chain A, Transcription Factor Pml, A Proto-Oncoprotein, Nmr, 1
Representative Structure At Ph 7.5, 30 C, In The
Presence Of Zinc
Length = 56
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 81 KVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119
K P+LL C HT+C CL + + CP + P P+G
Sbjct: 17 KCPKLLPCLHTLCSGCL-----EASGMQCPICQAPWPLG 50
>pdb|2FFW|A Chain A, Solution Structure Of The RbccTRIM B-Box1 Domain Of Human
Mid1: B-Box With A Ring
Length = 78
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 140 QTNDEKATESIPLFSAELHIKCDFSLQLHIKCDEDESHIAVLYCTVCASHLCEQCASDSH 199
+T E+A ++ + SAE + C F CD+D + AV C C C++C +H
Sbjct: 13 ETRRERAFDANTMTSAE-KVLCQF-------CDQDPAQDAVKTCVTCEVSYCDECLKATH 64
Query: 200 ATRT-LQKHRRI 210
+ HR I
Sbjct: 65 PNKKPFTGHRLI 76
>pdb|3ZY2|A Chain A, Crystal Structure Of Pofut1 In Complex With Gdp (High
Resolution Dataset)
pdb|3ZY3|A Chain A, Crystal Structure Of Pofut1 In Complex With Gdp
(Crystal-Form-Iii)
pdb|3ZY3|B Chain B, Crystal Structure Of Pofut1 In Complex With Gdp
(Crystal-Form-Iii)
pdb|3ZY4|A Chain A, Crystal Structure Of Pofut1 Apo-Form (Crystal-Form-I)
pdb|3ZY5|A Chain A, Crystal Structure Of Pofut1 In Complex With Gdp-Fucose
(Crystal-Form-I)
pdb|3ZY6|A Chain A, Crystal Structure Of Pofut1 In Complex With Gdp-Fucose
(Crystal-Form-Ii)
Length = 362
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 12/95 (12%)
Query: 219 KPFCSSHPTNIAEFICLEEHCQTSAQYPPLMCFICKDYGRH---------KTHKHALVEI 269
KPF + H N A+++ + EH T+ P C G H K ++E
Sbjct: 211 KPFVAVHLRNDADWVRVCEHIDTTTNRPLFASEQCLGEGHHLGTLTKEICSPSKQQILEQ 270
Query: 270 EAENLRSYVKNA---SSNVQHLIEEITESVNTVDL 301
E + S + +S+ H+I+EI E++ ++
Sbjct: 271 IVEKVGSIGAKSVFVASDKDHMIDEINEALKPYEI 305
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,473,959
Number of Sequences: 62578
Number of extensions: 601148
Number of successful extensions: 1699
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1623
Number of HSP's gapped (non-prelim): 84
length of query: 550
length of database: 14,973,337
effective HSP length: 104
effective length of query: 446
effective length of database: 8,465,225
effective search space: 3775490350
effective search space used: 3775490350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)