Query psy15732
Match_columns 550
No_of_seqs 547 out of 3643
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 20:00:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15732.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15732hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4367|consensus 100.0 1.3E-30 2.9E-35 251.0 18.2 291 62-395 1-382 (699)
2 KOG0070|consensus 99.8 5.5E-18 1.2E-22 149.4 10.7 100 444-544 60-180 (181)
3 KOG0071|consensus 99.7 5.3E-18 1.1E-22 140.9 8.6 86 456-542 93-178 (180)
4 PF00025 Arf: ADP-ribosylation 99.6 2.2E-15 4.7E-20 138.6 12.9 86 456-541 90-175 (175)
5 KOG0073|consensus 99.6 2.8E-15 6.1E-20 128.5 10.3 100 445-544 60-180 (185)
6 PLN00223 ADP-ribosylation fact 99.6 9.5E-15 2E-19 135.1 12.0 88 456-544 93-180 (181)
7 KOG0072|consensus 99.5 1.5E-14 3.2E-19 121.1 8.4 88 456-544 94-181 (182)
8 KOG0075|consensus 99.5 4.5E-14 9.8E-19 118.6 10.1 98 444-542 64-182 (186)
9 smart00177 ARF ARF-like small 99.5 5.2E-14 1.1E-18 129.5 11.3 86 456-542 89-174 (175)
10 cd04158 ARD1 ARD1 subfamily. 99.5 8.8E-14 1.9E-18 127.2 12.4 94 456-549 75-168 (169)
11 KOG2177|consensus 99.5 2.8E-13 6E-18 138.0 16.1 127 59-275 7-133 (386)
12 cd04149 Arf6 Arf6 subfamily. 99.5 9.9E-14 2.2E-18 126.7 10.8 83 456-539 85-167 (168)
13 PTZ00133 ADP-ribosylation fact 99.5 2.8E-13 6.2E-18 125.4 12.2 88 456-544 93-180 (182)
14 cd04150 Arf1_5_like Arf1-Arf5- 99.5 2.8E-13 6E-18 122.6 11.1 83 456-539 76-158 (159)
15 KOG0076|consensus 99.5 4.6E-14 9.9E-19 122.4 5.3 89 456-544 101-189 (197)
16 cd04161 Arl2l1_Arl13_like Arl2 99.4 5E-13 1.1E-17 122.0 11.2 84 456-539 75-166 (167)
17 KOG0092|consensus 99.4 4.6E-13 9.9E-18 118.7 8.6 94 444-544 53-169 (200)
18 smart00178 SAR Sar1p-like memb 99.4 2.2E-12 4.7E-17 119.8 11.0 85 456-540 93-183 (184)
19 cd04120 Rab12 Rab12 subfamily. 99.4 2.4E-12 5.3E-17 120.7 11.3 96 444-545 48-166 (202)
20 cd04121 Rab40 Rab40 subfamily. 99.4 2.4E-12 5.1E-17 119.6 11.0 92 444-543 54-168 (189)
21 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.4 4.5E-12 9.8E-17 116.5 11.1 83 456-539 91-173 (174)
22 KOG0074|consensus 99.3 5.7E-13 1.2E-17 111.2 4.1 99 444-543 61-180 (185)
23 cd04156 ARLTS1 ARLTS1 subfamil 99.3 7.6E-12 1.6E-16 113.1 11.0 84 456-539 76-159 (160)
24 KOG4185|consensus 99.3 6.8E-11 1.5E-15 118.2 18.1 216 65-359 3-219 (296)
25 cd04157 Arl6 Arl6 subfamily. 99.3 1.3E-11 2.8E-16 111.7 10.9 83 456-539 77-161 (162)
26 cd04154 Arl2 Arl2 subfamily. 99.3 1.3E-11 2.7E-16 113.4 10.9 83 456-539 90-172 (173)
27 cd04103 Centaurin_gamma Centau 99.3 7.2E-12 1.6E-16 113.1 8.3 80 456-540 74-157 (158)
28 cd00879 Sar1 Sar1 subfamily. 99.3 1.8E-11 3.9E-16 114.2 11.1 85 456-540 95-189 (190)
29 PTZ00099 rab6; Provisional 99.3 2E-11 4.4E-16 112.1 10.6 93 444-543 28-143 (176)
30 KOG0078|consensus 99.3 2.6E-11 5.6E-16 109.7 10.9 97 441-544 57-176 (207)
31 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.3 3.9E-11 8.5E-16 111.2 12.2 88 456-543 84-171 (183)
32 KOG0098|consensus 99.3 2.4E-11 5.3E-16 106.8 9.7 93 444-543 54-169 (216)
33 cd04162 Arl9_Arfrp2_like Arl9/ 99.3 2.4E-11 5.3E-16 110.5 10.1 82 456-539 76-163 (164)
34 PF15227 zf-C3HC4_4: zinc fing 99.3 2.8E-12 6E-17 86.8 2.8 40 68-112 1-42 (42)
35 KOG0084|consensus 99.3 2.9E-11 6.3E-16 107.8 9.5 97 444-547 57-177 (205)
36 smart00176 RAN Ran (Ras-relate 99.2 2.7E-11 5.8E-16 113.5 9.9 80 456-544 76-156 (200)
37 cd04151 Arl1 Arl1 subfamily. 99.2 7E-11 1.5E-15 106.7 11.3 83 456-539 75-157 (158)
38 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.2 4.3E-11 9.3E-16 109.7 10.0 83 456-544 82-166 (172)
39 cd04107 Rab32_Rab38 Rab38/Rab3 99.2 6.4E-11 1.4E-15 111.6 10.7 84 456-544 82-170 (201)
40 cd01875 RhoG RhoG subfamily. 99.2 6.4E-11 1.4E-15 110.5 10.4 85 456-543 83-178 (191)
41 cd04133 Rop_like Rop subfamily 99.2 7.2E-11 1.6E-15 108.4 9.7 78 456-541 81-172 (176)
42 cd04122 Rab14 Rab14 subfamily. 99.2 1.3E-10 2.8E-15 105.8 10.6 81 456-543 83-165 (166)
43 KOG0087|consensus 99.2 1.5E-10 3.1E-15 104.4 10.4 93 444-543 62-177 (222)
44 smart00502 BBC B-Box C-termina 99.2 2.5E-09 5.3E-14 92.7 18.0 122 275-406 2-124 (127)
45 cd04155 Arl3 Arl3 subfamily. 99.2 1.6E-10 3.5E-15 105.9 10.8 83 456-539 90-172 (173)
46 PTZ00369 Ras-like protein; Pro 99.2 1.4E-10 3E-15 108.1 10.4 86 456-547 85-172 (189)
47 cd04160 Arfrp1 Arfrp1 subfamil 99.2 1.6E-10 3.5E-15 105.1 10.4 83 456-539 82-166 (167)
48 KOG0088|consensus 99.2 7.2E-11 1.6E-15 100.6 7.2 81 456-543 94-176 (218)
49 cd00877 Ran Ran (Ras-related n 99.2 1.8E-10 3.8E-15 105.0 10.2 82 456-545 81-162 (166)
50 cd04175 Rap1 Rap1 subgroup. T 99.2 1.6E-10 3.6E-15 104.9 9.8 81 456-542 81-163 (164)
51 PLN03071 GTP-binding nuclear p 99.1 1.5E-10 3.2E-15 110.5 9.3 80 456-544 94-174 (219)
52 cd01873 RhoBTB RhoBTB subfamil 99.1 1.7E-10 3.8E-15 107.7 9.2 77 456-540 96-194 (195)
53 cd04127 Rab27A Rab27a subfamil 99.1 2.7E-10 5.9E-15 105.1 10.3 83 456-544 95-179 (180)
54 TIGR00599 rad18 DNA repair pro 99.1 4.7E-11 1E-15 120.3 5.2 85 46-142 7-91 (397)
55 KOG0086|consensus 99.1 3.7E-10 8.1E-15 95.7 9.7 94 444-544 57-173 (214)
56 cd04134 Rho3 Rho3 subfamily. 99.1 2.9E-10 6.3E-15 105.9 10.1 88 456-545 80-177 (189)
57 KOG0094|consensus 99.1 2.2E-10 4.9E-15 101.7 8.5 110 425-542 53-185 (221)
58 cd04126 Rab20 Rab20 subfamily. 99.1 3.5E-10 7.6E-15 107.4 10.5 86 456-542 76-190 (220)
59 KOG0081|consensus 99.1 2.3E-10 4.9E-15 97.7 7.9 97 442-544 64-183 (219)
60 cd04117 Rab15 Rab15 subfamily. 99.1 3.7E-10 7.9E-15 102.4 9.9 78 456-540 81-160 (161)
61 cd00878 Arf_Arl Arf (ADP-ribos 99.1 5.5E-10 1.2E-14 100.7 10.9 83 456-539 75-157 (158)
62 cd04136 Rap_like Rap-like subf 99.1 3.7E-10 8E-15 102.3 9.4 80 456-541 81-162 (163)
63 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.1 5.5E-10 1.2E-14 106.7 10.9 93 444-544 60-190 (232)
64 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.1 4.1E-10 8.9E-15 104.0 9.5 79 456-542 85-180 (182)
65 cd04111 Rab39 Rab39 subfamily. 99.1 6.2E-10 1.4E-14 105.5 10.6 83 456-544 84-168 (211)
66 KOG0287|consensus 99.1 4.8E-11 1E-15 113.1 2.9 74 57-142 15-88 (442)
67 KOG0091|consensus 99.1 6.3E-10 1.4E-14 95.6 9.2 97 441-543 54-174 (213)
68 cd01865 Rab3 Rab3 subfamily. 99.1 7.7E-10 1.7E-14 100.6 10.2 81 456-543 82-164 (165)
69 cd04138 H_N_K_Ras_like H-Ras/N 99.1 7.8E-10 1.7E-14 99.8 9.7 80 456-541 81-161 (162)
70 cd04176 Rap2 Rap2 subgroup. T 99.1 7.2E-10 1.6E-14 100.5 9.5 80 456-541 81-162 (163)
71 cd04143 Rhes_like Rhes_like su 99.1 1E-09 2.2E-14 106.4 10.9 81 456-541 80-170 (247)
72 cd04144 Ras2 Ras2 subfamily. 99.1 9.1E-10 2E-14 102.7 10.2 83 456-544 79-165 (190)
73 cd04110 Rab35 Rab35 subfamily. 99.0 9.7E-10 2.1E-14 103.3 10.4 81 456-544 87-169 (199)
74 cd04145 M_R_Ras_like M-Ras/R-R 99.0 7.4E-10 1.6E-14 100.4 9.3 80 456-541 82-163 (164)
75 cd04109 Rab28 Rab28 subfamily. 99.0 9.9E-10 2.1E-14 104.6 10.5 83 456-544 82-168 (215)
76 smart00173 RAS Ras subfamily o 99.0 1.1E-09 2.3E-14 99.4 10.0 82 456-543 80-163 (164)
77 cd04131 Rnd Rnd subfamily. Th 99.0 9.2E-10 2E-14 101.4 9.5 78 456-541 81-175 (178)
78 KOG0394|consensus 99.0 1E-09 2.3E-14 96.5 9.1 84 456-544 90-180 (210)
79 cd01867 Rab8_Rab10_Rab13_like 99.0 1.4E-09 2.9E-14 99.2 10.3 81 456-543 84-166 (167)
80 cd04119 RJL RJL (RabJ-Like) su 99.0 1.2E-09 2.5E-14 99.4 9.8 81 456-542 81-167 (168)
81 cd04112 Rab26 Rab26 subfamily. 99.0 1.6E-09 3.4E-14 101.2 10.8 82 456-544 82-165 (191)
82 KOG0079|consensus 99.0 7.4E-10 1.6E-14 93.5 7.3 93 443-543 55-170 (198)
83 cd04159 Arl10_like Arl10-like 99.0 2.4E-09 5.1E-14 96.1 11.3 83 456-539 76-158 (159)
84 cd01871 Rac1_like Rac1-like su 99.0 1.1E-09 2.3E-14 100.7 9.1 78 456-540 81-173 (174)
85 cd01874 Cdc42 Cdc42 subfamily. 99.0 1.3E-09 2.8E-14 100.2 9.6 78 456-540 81-173 (175)
86 cd04128 Spg1 Spg1p. Spg1p (se 99.0 1.3E-09 2.9E-14 100.7 9.7 80 456-543 81-167 (182)
87 smart00504 Ubox Modified RING 99.0 3.2E-10 7E-15 85.2 4.3 62 65-138 1-62 (63)
88 KOG0077|consensus 99.0 2.7E-10 5.9E-15 98.3 4.3 86 456-541 96-192 (193)
89 cd04140 ARHI_like ARHI subfami 99.0 1.5E-09 3.1E-14 98.8 9.3 79 456-540 81-163 (165)
90 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.0 2.1E-09 4.6E-14 97.7 10.2 81 456-543 83-165 (166)
91 KOG0083|consensus 99.0 3.8E-10 8.2E-15 93.4 4.4 94 444-544 46-162 (192)
92 cd04116 Rab9 Rab9 subfamily. 99.0 1.9E-09 4.2E-14 98.4 9.6 80 456-540 86-169 (170)
93 PF14835 zf-RING_6: zf-RING of 99.0 1.9E-10 4.1E-15 82.7 2.2 62 61-136 3-65 (65)
94 PLN03108 Rab family protein; P 99.0 2.8E-09 6E-14 101.1 10.6 82 456-544 87-170 (210)
95 cd01864 Rab19 Rab19 subfamily. 99.0 3E-09 6.5E-14 96.7 9.7 79 456-540 84-164 (165)
96 cd04108 Rab36_Rab34 Rab34/Rab3 99.0 3.5E-09 7.7E-14 96.8 10.2 82 456-543 81-166 (170)
97 KOG0080|consensus 98.9 2.2E-09 4.8E-14 92.0 7.6 95 444-544 59-176 (209)
98 cd01868 Rab11_like Rab11-like. 98.9 3.9E-09 8.4E-14 95.9 9.9 79 456-541 84-164 (165)
99 cd01866 Rab2 Rab2 subfamily. 98.9 4.6E-09 1E-13 95.8 10.4 81 456-543 85-167 (168)
100 cd04125 RabA_like RabA-like su 98.9 5.2E-09 1.1E-13 97.3 10.8 82 456-544 81-164 (188)
101 cd01860 Rab5_related Rab5-rela 98.9 4.6E-09 1E-13 95.1 10.0 79 456-541 82-162 (163)
102 cd04113 Rab4 Rab4 subfamily. 98.9 3.8E-09 8.2E-14 95.5 9.3 79 456-541 81-161 (161)
103 cd04142 RRP22 RRP22 subfamily. 98.9 2.4E-09 5.2E-14 100.4 8.0 86 456-546 89-178 (198)
104 cd04106 Rab23_lke Rab23-like s 98.9 4.1E-09 8.8E-14 95.3 9.2 77 456-540 83-161 (162)
105 cd01863 Rab18 Rab18 subfamily. 98.9 4.7E-09 1E-13 94.8 9.6 79 456-540 81-160 (161)
106 cd04132 Rho4_like Rho4-like su 98.9 5E-09 1.1E-13 97.3 10.0 81 456-544 81-169 (187)
107 cd04139 RalA_RalB RalA/RalB su 98.9 6.6E-09 1.4E-13 94.0 10.1 82 456-543 80-163 (164)
108 cd04115 Rab33B_Rab33A Rab33B/R 98.9 5.1E-09 1.1E-13 95.7 9.3 81 456-542 84-169 (170)
109 PF13445 zf-RING_UBOX: RING-ty 98.9 3.4E-10 7.5E-15 76.4 1.1 41 68-110 1-43 (43)
110 PLN03110 Rab GTPase; Provision 98.9 6.5E-09 1.4E-13 99.0 10.3 81 456-543 93-175 (216)
111 KOG0093|consensus 98.9 2.9E-09 6.4E-14 89.9 6.7 96 444-546 69-187 (193)
112 cd04148 RGK RGK subfamily. Th 98.9 3.2E-09 7E-14 101.4 8.0 82 456-543 81-164 (221)
113 KOG0097|consensus 98.9 9.4E-09 2E-13 86.0 9.6 104 437-549 54-183 (215)
114 cd04177 RSR1 RSR1 subgroup. R 98.9 7.7E-09 1.7E-13 94.3 10.0 82 456-542 81-164 (168)
115 smart00174 RHO Rho (Ras homolo 98.9 6.1E-09 1.3E-13 95.4 9.2 80 456-542 78-172 (174)
116 smart00175 RAB Rab subfamily o 98.9 8.6E-09 1.9E-13 93.3 10.0 81 456-543 81-163 (164)
117 cd04146 RERG_RasL11_like RERG/ 98.9 7.9E-09 1.7E-13 93.9 9.7 81 456-542 80-164 (165)
118 cd04118 Rab24 Rab24 subfamily. 98.9 9.8E-09 2.1E-13 95.9 10.5 81 456-544 82-168 (193)
119 cd04123 Rab21 Rab21 subfamily. 98.9 9.2E-09 2E-13 92.8 10.0 79 456-541 81-161 (162)
120 cd04137 RheB Rheb (Ras Homolog 98.9 1E-08 2.2E-13 94.6 10.0 83 456-544 81-165 (180)
121 cd01862 Rab7 Rab7 subfamily. 98.9 1.5E-08 3.3E-13 92.5 10.7 84 456-544 81-169 (172)
122 PF00071 Ras: Ras family; Int 98.9 9.1E-09 2E-13 93.1 9.0 80 456-542 80-161 (162)
123 PLN03208 E3 ubiquitin-protein 98.9 1.5E-09 3.3E-14 97.4 3.8 53 62-119 15-81 (193)
124 cd04147 Ras_dva Ras-dva subfam 98.9 1.2E-08 2.6E-13 95.8 10.1 82 456-542 79-163 (198)
125 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.8 1.9E-08 4.1E-13 95.6 11.0 93 444-544 48-178 (222)
126 cd04101 RabL4 RabL4 (Rab-like4 98.8 1.6E-08 3.4E-13 91.7 9.8 78 456-541 84-163 (164)
127 cd01861 Rab6 Rab6 subfamily. 98.8 1.5E-08 3.3E-13 91.5 9.3 78 456-540 81-160 (161)
128 cd01897 NOG NOG1 is a nucleola 98.8 1.1E-08 2.3E-13 93.2 8.3 86 447-541 82-167 (168)
129 PLN03118 Rab family protein; P 98.8 2.3E-08 4.9E-13 94.9 10.5 83 456-544 94-179 (211)
130 cd04124 RabL2 RabL2 subfamily. 98.8 2E-08 4.4E-13 90.9 9.6 79 456-543 81-159 (161)
131 PF04564 U-box: U-box domain; 98.8 4.6E-09 9.9E-14 81.0 4.3 69 63-142 2-70 (73)
132 cd04129 Rho2 Rho2 subfamily. 98.8 2.5E-08 5.4E-13 92.7 10.0 82 456-544 81-175 (187)
133 PF13923 zf-C3HC4_2: Zinc fing 98.8 2.1E-09 4.6E-14 71.9 1.9 38 68-112 1-39 (39)
134 PF00097 zf-C3HC4: Zinc finger 98.8 1.9E-09 4.1E-14 73.2 1.5 40 68-112 1-41 (41)
135 PF13639 zf-RING_2: Ring finge 98.8 1.7E-09 3.7E-14 74.6 0.8 43 67-113 2-44 (44)
136 COG5432 RAD18 RING-finger-cont 98.7 5.7E-09 1.2E-13 97.1 3.8 75 56-142 16-90 (391)
137 cd00154 Rab Rab family. Rab G 98.7 3.7E-08 8E-13 88.1 9.0 77 456-539 81-159 (159)
138 PF14634 zf-RING_5: zinc-RING 98.7 6.5E-09 1.4E-13 71.5 3.1 44 67-114 1-44 (44)
139 cd00876 Ras Ras family. The R 98.7 4.4E-08 9.5E-13 88.1 8.9 80 456-541 79-160 (160)
140 KOG0320|consensus 98.7 7.7E-09 1.7E-13 90.1 3.3 52 63-119 129-180 (187)
141 cd01870 RhoA_like RhoA-like su 98.7 7E-08 1.5E-12 88.4 9.9 84 456-541 81-174 (175)
142 PF13920 zf-C3HC4_3: Zinc fing 98.7 6.7E-09 1.5E-13 73.7 2.2 46 65-117 2-48 (50)
143 cd04130 Wrch_1 Wrch-1 subfamil 98.7 6.6E-08 1.4E-12 88.6 9.4 76 456-538 80-170 (173)
144 cd01892 Miro2 Miro2 subfamily. 98.7 1.2E-07 2.6E-12 86.6 10.9 76 456-542 86-166 (169)
145 cd04135 Tc10 TC10 subfamily. 98.7 8E-08 1.7E-12 88.0 9.7 79 456-541 80-173 (174)
146 cd04114 Rab30 Rab30 subfamily. 98.7 1E-07 2.2E-12 86.8 9.9 80 456-541 88-168 (169)
147 KOG0395|consensus 98.7 1.2E-07 2.6E-12 88.2 10.2 82 456-543 83-166 (196)
148 PTZ00132 GTP-binding nuclear p 98.6 1.4E-07 3E-12 89.8 10.1 81 456-544 90-170 (215)
149 PRK12299 obgE GTPase CgtA; Rev 98.6 1.1E-07 2.4E-12 95.9 9.0 93 446-547 238-333 (335)
150 cd01893 Miro1 Miro1 subfamily. 98.6 2.1E-07 4.6E-12 84.6 8.9 81 456-542 79-164 (166)
151 KOG0823|consensus 98.6 3.7E-08 8E-13 90.1 3.1 53 62-119 44-97 (230)
152 KOG0317|consensus 98.5 4.6E-08 9.9E-13 92.1 2.7 52 61-119 235-286 (293)
153 cd00157 Rho Rho (Ras homology) 98.5 3.8E-07 8.3E-12 83.1 8.6 77 456-539 80-170 (171)
154 cd01898 Obg Obg subfamily. Th 98.5 2.4E-07 5.3E-12 84.3 7.2 88 446-540 80-169 (170)
155 KOG0804|consensus 98.5 3.3E-06 7.2E-11 84.1 15.4 89 60-198 170-258 (493)
156 TIGR02729 Obg_CgtA Obg family 98.5 2.4E-07 5.3E-12 93.4 7.4 92 445-541 236-328 (329)
157 PF12126 DUF3583: Protein of u 98.5 7E-06 1.5E-10 77.3 15.7 118 282-409 5-123 (324)
158 PHA02929 N1R/p28-like protein; 98.5 8.4E-08 1.8E-12 90.3 3.2 53 63-117 172-227 (238)
159 cd01890 LepA LepA subfamily. 98.4 1.1E-06 2.4E-11 80.8 9.2 56 480-541 118-176 (179)
160 cd00162 RING RING-finger (Real 98.4 1.7E-07 3.8E-12 64.7 2.7 43 67-115 1-44 (45)
161 TIGR00570 cdk7 CDK-activating 98.4 2.9E-05 6.3E-10 75.5 18.3 50 65-119 3-56 (309)
162 PRK04213 GTP-binding protein; 98.4 5E-07 1.1E-11 84.9 5.5 67 480-549 129-199 (201)
163 PHA02926 zinc finger-like prot 98.3 3.2E-07 7E-12 83.2 3.0 60 58-117 163-230 (242)
164 smart00184 RING Ring finger. E 98.3 4E-07 8.7E-12 60.6 2.5 39 68-112 1-39 (39)
165 cd01878 HflX HflX subfamily. 98.3 1.9E-06 4.2E-11 81.1 7.8 83 446-541 122-204 (204)
166 PRK12297 obgE GTPase CgtA; Rev 98.3 2.6E-06 5.7E-11 88.3 9.2 91 445-545 237-330 (424)
167 PRK12296 obgE GTPase CgtA; Rev 98.3 2.2E-06 4.8E-11 90.1 8.1 93 445-543 237-341 (500)
168 TIGR02528 EutP ethanolamine ut 98.2 1.1E-06 2.4E-11 77.5 4.2 52 482-538 89-141 (142)
169 TIGR00157 ribosome small subun 98.2 2.2E-06 4.9E-11 82.9 6.2 73 457-539 46-120 (245)
170 cd00882 Ras_like_GTPase Ras-li 98.2 6.6E-06 1.4E-10 72.3 8.5 79 456-539 77-157 (157)
171 cd01881 Obg_like The Obg-like 98.2 2.6E-06 5.7E-11 77.8 5.7 91 446-540 76-175 (176)
172 TIGR00231 small_GTP small GTP- 98.1 1.2E-05 2.6E-10 71.5 8.6 72 461-538 88-160 (161)
173 COG2229 Predicted GTPase [Gene 98.1 1.4E-05 2.9E-10 71.3 8.0 77 456-540 100-176 (187)
174 KOG2164|consensus 98.1 1.4E-06 3.1E-11 88.5 2.0 50 65-119 186-238 (513)
175 KOG0090|consensus 98.1 9.4E-06 2E-10 73.8 6.9 93 445-540 109-237 (238)
176 PRK05291 trmE tRNA modificatio 98.1 0.00029 6.3E-09 74.5 19.4 52 480-543 320-371 (449)
177 COG5574 PEX10 RING-finger-cont 98.1 1.5E-06 3.3E-11 81.0 1.6 52 63-119 213-264 (271)
178 cd01887 IF2_eIF5B IF2/eIF5B (i 98.1 1.5E-05 3.1E-10 72.3 8.1 62 480-542 101-166 (168)
179 KOG0095|consensus 98.0 8.3E-06 1.8E-10 69.3 5.7 93 444-542 55-169 (213)
180 TIGR03156 GTP_HflX GTP-binding 98.0 1.3E-05 2.9E-10 81.6 8.3 81 446-540 270-350 (351)
181 PRK15467 ethanolamine utilizat 98.0 5.5E-06 1.2E-10 74.6 4.9 82 446-542 66-147 (158)
182 PF00643 zf-B_box: B-box zinc 98.0 2.1E-06 4.6E-11 58.4 1.0 41 218-267 2-42 (42)
183 PRK15494 era GTPase Era; Provi 98.0 1.1E-05 2.5E-10 81.9 6.8 58 481-543 160-217 (339)
184 PRK12298 obgE GTPase CgtA; Rev 98.0 2E-05 4.3E-10 81.4 7.9 97 445-544 238-335 (390)
185 cd00021 BBOX B-Box-type zinc f 98.0 4E-06 8.8E-11 56.0 1.8 38 221-267 2-39 (39)
186 KOG0393|consensus 97.9 3.1E-05 6.7E-10 70.9 7.8 85 456-543 85-180 (198)
187 KOG0096|consensus 97.9 1.1E-05 2.3E-10 71.9 4.6 79 456-542 91-169 (216)
188 cd04171 SelB SelB subfamily. 97.9 2.8E-05 6E-10 70.1 7.3 55 482-539 105-163 (164)
189 cd01888 eIF2_gamma eIF2-gamma 97.9 1.9E-05 4.1E-10 74.4 6.3 58 482-542 138-199 (203)
190 KOG3883|consensus 97.9 3.8E-05 8.3E-10 65.8 7.2 85 448-541 88-174 (198)
191 cd01879 FeoB Ferrous iron tran 97.9 1.6E-05 3.4E-10 71.2 5.2 81 445-541 75-156 (158)
192 KOG2660|consensus 97.9 5.4E-06 1.2E-10 79.9 1.9 72 60-139 10-82 (331)
193 PRK11058 GTPase HflX; Provisio 97.9 5.6E-05 1.2E-09 79.0 9.4 86 446-543 278-363 (426)
194 cd00881 GTP_translation_factor 97.8 5.5E-05 1.2E-09 69.9 8.1 63 480-542 113-187 (189)
195 TIGR01393 lepA GTP-binding pro 97.8 5.9E-05 1.3E-09 82.2 9.3 56 481-542 122-180 (595)
196 cd04105 SR_beta Signal recogni 97.8 3.2E-05 7E-10 72.8 6.3 92 446-539 74-202 (203)
197 PF12678 zf-rbx1: RING-H2 zinc 97.8 1.2E-05 2.6E-10 61.8 2.8 45 67-113 21-73 (73)
198 KOG4628|consensus 97.8 9.3E-06 2E-10 80.2 2.7 51 66-119 230-280 (348)
199 cd01894 EngA1 EngA1 subfamily. 97.8 3.6E-05 7.9E-10 68.6 6.4 53 481-541 105-157 (157)
200 KOG0978|consensus 97.8 3.9E-06 8.5E-11 89.7 -0.3 56 58-119 636-691 (698)
201 KOG4159|consensus 97.8 9.6E-06 2.1E-10 82.3 2.2 51 61-118 80-130 (398)
202 TIGR03594 GTPase_EngA ribosome 97.8 5.3E-05 1.1E-09 80.1 7.9 62 480-542 282-344 (429)
203 KOG4252|consensus 97.8 1.9E-05 4.1E-10 69.4 3.6 80 456-543 101-182 (246)
204 cd01891 TypA_BipA TypA (tyrosi 97.8 0.00012 2.6E-09 68.4 9.2 68 480-547 116-193 (194)
205 PRK03003 GTP-binding protein D 97.8 7.6E-05 1.6E-09 79.6 8.8 84 447-543 296-383 (472)
206 cd01889 SelB_euk SelB subfamil 97.8 6.3E-05 1.4E-09 70.1 7.2 61 481-542 120-186 (192)
207 PRK03003 GTP-binding protein D 97.8 7.6E-05 1.7E-09 79.6 8.7 56 480-543 145-200 (472)
208 KOG0311|consensus 97.8 4.6E-06 1E-10 80.7 -0.8 54 60-119 38-92 (381)
209 cd01895 EngA2 EngA2 subfamily. 97.7 0.00011 2.5E-09 66.5 7.9 59 480-539 112-172 (174)
210 COG5540 RING-finger-containing 97.7 2E-05 4.4E-10 74.5 2.6 52 64-118 322-373 (374)
211 TIGR00436 era GTP-binding prot 97.7 7.5E-05 1.6E-09 73.6 6.6 59 480-543 106-165 (270)
212 COG1100 GTPase SAR1 and relate 97.6 0.00015 3.2E-09 69.0 8.0 87 456-543 86-186 (219)
213 PF12861 zf-Apc11: Anaphase-pr 97.6 5.5E-05 1.2E-09 58.6 3.9 55 64-118 20-83 (85)
214 cd00880 Era_like Era (E. coli 97.6 0.00011 2.4E-09 65.2 6.6 60 480-540 103-162 (163)
215 cd04164 trmE TrmE (MnmE, ThdF, 97.6 8.6E-05 1.9E-09 66.2 5.9 51 480-541 106-156 (157)
216 KOG1489|consensus 97.6 0.00014 3E-09 70.4 7.0 84 446-539 276-364 (366)
217 PRK05433 GTP-binding protein L 97.6 0.00021 4.6E-09 78.0 9.4 56 481-542 126-184 (600)
218 KOG2879|consensus 97.6 4.7E-05 1E-09 71.3 3.6 51 62-117 236-287 (298)
219 smart00336 BBOX B-Box-type zin 97.6 3.9E-05 8.4E-10 52.1 2.3 40 219-267 3-42 (42)
220 TIGR00487 IF-2 translation ini 97.6 0.00011 2.5E-09 79.6 6.7 85 447-540 161-248 (587)
221 cd01883 EF1_alpha Eukaryotic e 97.6 6.3E-05 1.4E-09 71.7 4.1 52 481-533 137-196 (219)
222 COG5243 HRD1 HRD ubiquitin lig 97.6 4.5E-05 9.8E-10 74.1 2.9 56 63-120 285-348 (491)
223 COG0532 InfB Translation initi 97.6 0.00027 5.8E-09 73.4 8.7 87 446-541 80-169 (509)
224 cd01855 YqeH YqeH. YqeH is an 97.6 0.00016 3.4E-09 67.3 6.6 62 480-542 60-125 (190)
225 CHL00189 infB translation init 97.5 0.0002 4.4E-09 79.1 7.7 86 447-541 321-409 (742)
226 cd04102 RabL3 RabL3 (Rab-like3 97.5 0.00019 4.1E-09 67.3 6.3 52 444-495 53-143 (202)
227 PRK12289 GTPase RsgA; Reviewed 97.5 0.00018 3.8E-09 73.1 6.5 83 445-540 90-173 (352)
228 COG5152 Uncharacterized conser 97.5 5.4E-05 1.2E-09 67.1 1.9 47 65-118 196-242 (259)
229 TIGR00437 feoB ferrous iron tr 97.5 8.7E-05 1.9E-09 80.9 3.9 52 481-541 99-154 (591)
230 TIGR00073 hypB hydrogenase acc 97.5 6.5E-05 1.4E-09 70.9 2.5 57 481-541 148-206 (207)
231 PRK05306 infB translation init 97.4 0.00018 3.9E-09 80.2 6.2 85 447-540 363-450 (787)
232 PRK00454 engB GTP-binding prot 97.4 0.00026 5.6E-09 66.0 6.3 58 480-543 134-195 (196)
233 COG5222 Uncharacterized conser 97.4 0.00011 2.4E-09 69.3 3.6 62 66-137 275-337 (427)
234 PRK12288 GTPase RsgA; Reviewed 97.4 0.00043 9.3E-09 70.3 8.2 83 448-540 124-206 (347)
235 PF11789 zf-Nse: Zinc-finger o 97.4 9.7E-05 2.1E-09 53.5 2.4 43 64-111 10-53 (57)
236 cd04163 Era Era subfamily. Er 97.4 0.0004 8.7E-09 62.2 7.0 56 481-540 111-167 (168)
237 COG0536 Obg Predicted GTPase [ 97.4 0.00042 9.2E-09 67.9 7.2 92 446-544 241-335 (369)
238 cd01854 YjeQ_engC YjeQ/EngC. 97.3 0.00033 7.1E-09 69.6 6.0 80 447-539 81-161 (287)
239 KOG1813|consensus 97.3 0.00013 2.7E-09 69.3 2.7 46 66-118 242-287 (313)
240 KOG1814|consensus 97.3 0.00014 3.1E-09 72.0 3.2 124 63-201 182-314 (445)
241 PRK00089 era GTPase Era; Revie 97.3 0.00042 9.2E-09 69.2 6.4 86 446-543 86-172 (292)
242 KOG4423|consensus 97.3 0.0005 1.1E-08 61.2 5.8 91 449-544 103-196 (229)
243 PRK00098 GTPase RsgA; Reviewed 97.3 0.00024 5.2E-09 70.9 4.4 54 480-539 110-164 (298)
244 PRK09518 bifunctional cytidyla 97.3 0.00066 1.4E-08 76.1 8.3 88 447-543 535-622 (712)
245 PF00009 GTP_EFTU: Elongation 97.3 0.00034 7.3E-09 64.9 4.9 89 445-542 94-187 (188)
246 PF09439 SRPRB: Signal recogni 97.3 0.00041 9E-09 63.2 5.2 62 444-507 75-138 (181)
247 TIGR00750 lao LAO/AO transport 97.2 0.00036 7.7E-09 69.9 5.1 63 480-542 171-238 (300)
248 TIGR00450 mnmE_trmE_thdF tRNA 97.2 0.00072 1.6E-08 71.1 7.6 78 446-543 284-361 (442)
249 PRK00093 GTP-binding protein D 97.2 0.00082 1.8E-08 71.1 8.0 62 480-542 283-344 (435)
250 PF02421 FeoB_N: Ferrous iron 97.2 0.00047 1E-08 61.3 5.0 64 461-537 89-156 (156)
251 TIGR00101 ureG urease accessor 97.2 0.00032 6.8E-09 65.7 4.1 53 485-541 141-195 (199)
252 cd01859 MJ1464 MJ1464. This f 97.2 0.00037 8.1E-09 62.5 3.9 57 481-543 41-97 (156)
253 TIGR00475 selB selenocysteine- 97.2 0.00079 1.7E-08 73.4 7.1 61 481-543 102-167 (581)
254 cd01858 NGP_1 NGP-1. Autoanti 97.1 0.00092 2E-08 60.0 6.1 57 480-541 38-94 (157)
255 PLN00023 GTP-binding protein; 97.1 0.001 2.2E-08 66.2 6.7 52 444-495 82-165 (334)
256 PRK09518 bifunctional cytidyla 97.1 0.00098 2.1E-08 74.8 7.2 56 480-543 382-437 (712)
257 COG2262 HflX GTPases [General 97.1 0.0018 3.9E-08 65.3 8.1 78 456-543 280-357 (411)
258 KOG0824|consensus 97.1 0.00023 5E-09 67.8 1.7 49 65-119 7-55 (324)
259 PRK13768 GTPase; Provisional 97.1 0.0012 2.7E-08 64.2 6.9 94 445-541 129-246 (253)
260 TIGR03680 eif2g_arch translati 97.1 0.0011 2.4E-08 69.3 7.0 58 482-542 135-196 (406)
261 TIGR03597 GTPase_YqeH ribosome 97.1 0.00051 1.1E-08 70.5 4.3 59 481-540 90-151 (360)
262 TIGR03598 GTPase_YsxC ribosome 97.1 0.00037 8E-09 64.1 2.8 48 480-531 128-179 (179)
263 cd01896 DRG The developmentall 97.0 0.0014 3E-08 63.1 6.7 51 480-541 175-225 (233)
264 COG0481 LepA Membrane GTPase L 97.0 0.0015 3.3E-08 66.6 7.0 55 482-542 129-186 (603)
265 KOG0802|consensus 97.0 0.00028 6E-09 76.4 1.7 53 63-117 289-341 (543)
266 KOG3161|consensus 97.0 0.00024 5.1E-09 73.9 0.9 72 61-138 7-78 (861)
267 TIGR00491 aIF-2 translation in 97.0 0.003 6.5E-08 68.7 9.3 27 515-541 189-215 (590)
268 cd01876 YihA_EngB The YihA (En 97.0 0.0011 2.5E-08 59.4 5.3 56 481-540 110-169 (170)
269 KOG1673|consensus 97.0 0.0022 4.8E-08 55.4 6.4 95 444-542 68-186 (205)
270 cd00066 G-alpha G protein alph 96.9 0.0036 7.9E-08 63.1 8.9 84 460-544 207-313 (317)
271 PRK00093 GTP-binding protein D 96.9 0.0015 3.3E-08 69.1 6.5 52 481-540 109-160 (435)
272 TIGR00483 EF-1_alpha translati 96.9 0.00075 1.6E-08 71.1 4.1 52 482-534 142-199 (426)
273 PF10662 PduV-EutP: Ethanolami 96.9 0.0012 2.6E-08 57.5 4.3 53 481-538 89-142 (143)
274 smart00275 G_alpha G protein a 96.9 0.005 1.1E-07 62.7 9.3 84 460-543 230-335 (342)
275 KOG1145|consensus 96.9 0.0041 9E-08 64.5 8.6 85 447-540 227-314 (683)
276 TIGR03594 GTPase_EngA ribosome 96.8 0.004 8.8E-08 65.8 8.9 82 446-543 80-161 (429)
277 KOG0825|consensus 96.8 0.00017 3.6E-09 76.5 -1.7 50 64-118 122-172 (1134)
278 KOG0297|consensus 96.8 0.00083 1.8E-08 69.3 3.3 52 62-120 18-70 (391)
279 PRK04000 translation initiatio 96.8 0.0029 6.3E-08 66.2 7.1 58 482-542 140-201 (411)
280 PRK13796 GTPase YqeH; Provisio 96.7 0.0022 4.7E-08 66.0 5.7 60 481-541 96-158 (365)
281 KOG1532|consensus 96.7 0.0051 1.1E-07 58.5 7.3 91 446-541 149-263 (366)
282 KOG1785|consensus 96.6 0.00075 1.6E-08 66.4 1.3 48 66-118 370-417 (563)
283 cd01849 YlqF_related_GTPase Yl 96.6 0.0026 5.7E-08 56.9 4.6 57 480-541 28-84 (155)
284 KOG1734|consensus 96.6 0.00063 1.4E-08 63.6 0.3 54 64-119 223-283 (328)
285 PF14447 Prok-RING_4: Prokaryo 96.6 0.0015 3.3E-08 45.9 2.1 47 64-119 6-52 (55)
286 PRK14845 translation initiatio 96.6 0.0084 1.8E-07 68.8 9.2 28 514-541 645-672 (1049)
287 KOG1002|consensus 96.6 0.00081 1.8E-08 68.5 1.0 53 62-119 533-588 (791)
288 cd04165 GTPBP1_like GTPBP1-lik 96.6 0.0033 7.2E-08 60.0 5.2 59 481-539 138-220 (224)
289 PF11793 FANCL_C: FANCL C-term 96.5 0.00072 1.6E-08 51.4 0.4 53 65-118 2-67 (70)
290 cd01856 YlqF YlqF. Proteins o 96.5 0.0031 6.7E-08 57.5 4.5 55 481-541 46-100 (171)
291 PRK04004 translation initiatio 96.4 0.014 2.9E-07 63.8 9.3 26 515-540 191-216 (586)
292 PRK12317 elongation factor 1-a 96.4 0.0055 1.2E-07 64.6 6.2 52 482-534 140-197 (425)
293 PF00643 zf-B_box: B-box zinc 96.3 0.0017 3.7E-08 43.9 1.2 38 169-211 4-41 (42)
294 PRK09866 hypothetical protein; 96.3 0.011 2.3E-07 63.6 7.6 89 444-539 258-350 (741)
295 KOG1039|consensus 96.3 0.0018 3.9E-08 64.6 1.8 51 63-118 159-222 (344)
296 PRK10512 selenocysteinyl-tRNA- 96.3 0.0088 1.9E-07 65.6 7.2 59 482-543 104-167 (614)
297 TIGR01394 TypA_BipA GTP-bindin 96.2 0.015 3.2E-07 63.6 8.4 76 463-542 102-191 (594)
298 TIGR03596 GTPase_YlqF ribosome 96.2 0.0061 1.3E-07 60.2 5.0 57 481-543 48-104 (276)
299 PRK10463 hydrogenase nickel in 96.2 0.0039 8.5E-08 61.1 3.5 57 481-541 230-288 (290)
300 smart00744 RINGv The RING-vari 96.2 0.0035 7.7E-08 43.9 2.3 44 67-113 1-49 (49)
301 PF07139 DUF1387: Protein of u 96.2 0.14 3.1E-06 49.7 13.8 77 284-370 154-230 (302)
302 PRK10218 GTP-binding protein; 96.1 0.017 3.6E-07 63.2 8.2 62 480-541 119-194 (607)
303 PRK09563 rbgA GTPase YlqF; Rev 96.1 0.013 2.8E-07 58.2 6.7 57 481-543 51-107 (287)
304 COG0378 HypB Ni2+-binding GTPa 96.1 0.0037 8.1E-08 56.8 2.5 55 483-541 144-200 (202)
305 KOG1493|consensus 96.0 0.0017 3.6E-08 48.4 0.0 52 67-118 22-82 (84)
306 cd01857 HSR1_MMR1 HSR1/MMR1. 96.0 0.0052 1.1E-07 54.0 3.2 44 480-529 41-84 (141)
307 COG0486 ThdF Predicted GTPase 96.0 0.016 3.4E-07 59.8 7.0 56 480-544 323-378 (454)
308 COG1159 Era GTPase [General fu 96.0 0.013 2.9E-07 56.8 6.0 88 444-543 85-173 (298)
309 PRK09435 membrane ATPase/prote 96.0 0.011 2.5E-07 59.4 5.5 61 484-545 197-263 (332)
310 KOG1645|consensus 95.9 0.0043 9.4E-08 61.6 2.2 55 65-119 4-58 (463)
311 COG0218 Predicted GTPase [Gene 95.9 0.039 8.5E-07 50.6 8.2 59 481-542 135-197 (200)
312 COG1160 Predicted GTPases [Gen 95.8 0.031 6.8E-07 57.4 7.8 61 480-541 288-350 (444)
313 COG1084 Predicted GTPase [Gene 95.8 2.4 5.1E-05 42.1 20.5 86 447-541 250-335 (346)
314 PRK01889 GTPase RsgA; Reviewed 95.8 0.014 3E-07 59.8 5.3 52 480-538 141-193 (356)
315 PRK09554 feoB ferrous iron tra 95.7 0.013 2.9E-07 65.9 5.3 53 481-542 112-168 (772)
316 KOG2817|consensus 95.7 0.011 2.5E-07 58.9 4.1 55 62-118 331-386 (394)
317 COG1160 Predicted GTPases [Gen 95.7 0.025 5.5E-07 58.1 6.7 82 444-541 83-164 (444)
318 KOG0462|consensus 95.6 0.015 3.3E-07 60.6 4.9 58 481-542 177-235 (650)
319 KOG1490|consensus 95.6 1.1 2.4E-05 46.7 18.0 75 463-540 265-339 (620)
320 KOG4172|consensus 95.5 0.0026 5.6E-08 44.1 -0.7 46 66-117 8-54 (62)
321 PF08477 Miro: Miro-like prote 95.4 0.021 4.6E-07 48.1 4.4 35 456-492 82-119 (119)
322 PTZ00327 eukaryotic translatio 95.3 0.014 3.1E-07 61.5 3.7 58 482-542 172-233 (460)
323 PF14570 zf-RING_4: RING/Ubox 95.3 0.013 2.8E-07 40.4 2.1 45 68-116 1-47 (48)
324 cd04166 CysN_ATPS CysN_ATPS su 95.2 0.035 7.7E-07 52.3 5.8 51 482-533 131-185 (208)
325 KOG4265|consensus 95.2 0.011 2.5E-07 58.2 2.3 49 63-118 288-337 (349)
326 KOG4275|consensus 95.1 0.0046 1E-07 58.6 -0.8 42 65-117 300-342 (350)
327 KOG1144|consensus 94.9 0.079 1.7E-06 57.1 7.7 31 514-544 659-689 (1064)
328 PF03308 ArgK: ArgK protein; 94.9 0.012 2.7E-07 56.1 1.5 58 483-541 169-229 (266)
329 cd04168 TetM_like Tet(M)-like 94.9 0.076 1.7E-06 51.1 7.0 27 515-541 208-234 (237)
330 cd01884 EF_Tu EF-Tu subfamily. 94.8 0.076 1.6E-06 49.5 6.7 51 481-532 117-173 (195)
331 KOG0827|consensus 94.8 0.014 3E-07 57.7 1.7 49 66-116 5-55 (465)
332 cd01899 Ygr210 Ygr210 subfamil 94.8 0.035 7.5E-07 55.8 4.5 57 480-543 213-270 (318)
333 COG5194 APC11 Component of SCF 94.7 0.03 6.4E-07 42.4 2.7 51 67-120 33-84 (88)
334 KOG1812|consensus 94.7 0.015 3.3E-07 59.8 1.7 131 65-210 146-288 (384)
335 COG1162 Predicted GTPases [Gen 94.7 0.062 1.4E-06 52.7 5.8 59 478-540 107-165 (301)
336 KOG4739|consensus 94.5 0.02 4.4E-07 53.5 2.0 47 65-119 3-50 (233)
337 PLN00043 elongation factor 1-a 94.5 0.029 6.3E-07 59.3 3.3 52 480-532 143-203 (447)
338 KOG1941|consensus 94.4 0.013 2.9E-07 57.8 0.6 63 64-127 364-428 (518)
339 PF05290 Baculo_IE-1: Baculovi 94.4 0.025 5.4E-07 47.5 2.1 51 64-119 79-134 (140)
340 PRK00741 prfC peptide chain re 94.4 0.13 2.7E-06 55.6 8.0 26 517-542 249-274 (526)
341 KOG0082|consensus 94.4 1.5 3.3E-05 44.3 15.0 84 460-544 241-346 (354)
342 PF08702 Fib_alpha: Fibrinogen 94.3 3.4 7.4E-05 36.3 16.8 111 268-388 24-137 (146)
343 cd00021 BBOX B-Box-type zinc f 94.3 0.028 6E-07 37.1 1.8 31 170-200 2-32 (39)
344 COG1703 ArgK Putative periplas 94.2 0.045 9.7E-07 53.2 3.6 60 484-543 192-255 (323)
345 KOG1423|consensus 94.1 0.15 3.3E-06 49.6 7.0 26 518-543 247-272 (379)
346 PF04641 Rtf2: Rtf2 RING-finge 94.0 0.081 1.8E-06 51.6 5.2 52 62-119 110-163 (260)
347 KOG3002|consensus 93.9 0.041 8.9E-07 54.2 2.9 58 62-138 45-104 (299)
348 PRK12736 elongation factor Tu; 93.9 0.15 3.2E-06 53.1 7.2 61 481-542 127-201 (394)
349 KOG0828|consensus 93.9 0.023 5E-07 57.9 1.0 55 62-117 568-634 (636)
350 KOG1428|consensus 93.8 0.043 9.3E-07 62.5 3.0 52 64-117 3485-3544(3738)
351 COG5219 Uncharacterized conser 93.7 0.022 4.7E-07 62.4 0.6 56 62-117 1466-1523(1525)
352 KOG1571|consensus 93.7 0.022 4.7E-07 56.3 0.5 47 62-118 302-348 (355)
353 smart00336 BBOX B-Box-type zin 93.6 0.039 8.4E-07 37.0 1.5 31 169-199 4-34 (42)
354 COG0370 FeoB Fe2+ transport sy 93.6 0.25 5.4E-06 53.5 8.1 55 481-544 108-166 (653)
355 KOG3039|consensus 93.2 0.086 1.9E-06 49.0 3.4 52 63-119 219-272 (303)
356 smart00010 small_GTPase Small 93.2 0.12 2.5E-06 43.7 4.1 58 457-531 56-115 (124)
357 KOG3800|consensus 92.9 0.067 1.5E-06 51.2 2.4 47 67-118 2-52 (300)
358 KOG4692|consensus 92.8 0.05 1.1E-06 53.1 1.4 48 63-117 420-467 (489)
359 COG5109 Uncharacterized conser 92.7 0.069 1.5E-06 51.4 2.2 57 59-117 330-387 (396)
360 KOG1001|consensus 92.7 0.057 1.2E-06 59.5 1.9 46 66-117 455-500 (674)
361 PTZ00141 elongation factor 1- 92.3 0.084 1.8E-06 55.9 2.5 52 480-532 143-203 (446)
362 COG5236 Uncharacterized conser 92.2 0.072 1.6E-06 51.9 1.7 51 61-116 57-107 (493)
363 KOG1707|consensus 92.1 0.08 1.7E-06 55.8 2.0 77 460-541 92-174 (625)
364 COG4917 EutP Ethanolamine util 92.1 0.27 5.8E-06 41.4 4.6 55 481-540 90-144 (148)
365 PRK13351 elongation factor G; 92.1 0.63 1.4E-05 52.3 9.3 26 517-542 253-278 (687)
366 PF10498 IFT57: Intra-flagella 91.6 13 0.00028 38.1 17.1 85 319-407 256-341 (359)
367 PF03029 ATP_bind_1: Conserved 91.4 0.56 1.2E-05 45.1 6.9 86 448-541 126-236 (238)
368 COG1163 DRG Predicted GTPase [ 91.2 0.35 7.6E-06 47.6 5.2 49 482-541 240-288 (365)
369 TIGR02034 CysN sulfate adenyly 91.2 0.45 9.9E-06 49.8 6.5 50 482-532 134-187 (406)
370 PF00503 G-alpha: G-protein al 91.1 0.46 9.9E-06 49.5 6.3 81 460-541 282-389 (389)
371 TIGR00485 EF-Tu translation el 90.8 0.63 1.4E-05 48.5 7.1 47 481-528 127-179 (394)
372 PRK12735 elongation factor Tu; 90.3 0.35 7.6E-06 50.4 4.6 60 480-540 126-201 (396)
373 TIGR00503 prfC peptide chain r 90.2 1 2.2E-05 48.7 8.2 26 517-542 250-275 (527)
374 KOG4362|consensus 90.2 0.19 4E-06 54.5 2.5 70 59-138 15-85 (684)
375 PF10168 Nup88: Nuclear pore c 90.0 6 0.00013 44.4 14.1 64 275-349 560-623 (717)
376 PRK08476 F0F1 ATP synthase sub 89.9 13 0.00028 32.5 15.0 44 265-308 30-73 (141)
377 COG5220 TFB3 Cdk activating ki 89.8 0.11 2.4E-06 48.0 0.4 49 64-115 9-62 (314)
378 KOG4367|consensus 89.6 3 6.4E-05 42.3 10.1 29 170-198 225-253 (699)
379 PRK12740 elongation factor G; 89.6 1.9 4E-05 48.4 10.0 27 516-542 236-262 (668)
380 PF08317 Spc7: Spc7 kinetochor 89.6 25 0.00055 35.5 17.4 31 356-386 238-268 (325)
381 KOG3970|consensus 89.5 0.33 7.2E-06 44.5 3.1 51 65-118 50-106 (299)
382 PRK09602 translation-associate 89.5 0.44 9.5E-06 49.5 4.5 54 480-541 216-270 (396)
383 PF06858 NOG1: Nucleolar GTP-b 89.4 0.79 1.7E-05 33.0 4.4 42 448-492 17-58 (58)
384 KOG4185|consensus 89.2 0.089 1.9E-06 52.6 -0.8 49 66-115 208-265 (296)
385 cd04169 RF3 RF3 subfamily. Pe 88.5 0.64 1.4E-05 45.6 4.7 30 480-509 122-154 (267)
386 COG5257 GCD11 Translation init 88.3 0.48 1E-05 46.6 3.5 58 483-543 142-203 (415)
387 PRK05506 bifunctional sulfate 88.3 0.54 1.2E-05 52.3 4.5 50 482-532 158-211 (632)
388 PF08112 ATP-synt_E_2: ATP syn 88.1 5.7 0.00012 27.6 7.5 45 325-369 7-51 (56)
389 COG5175 MOT2 Transcriptional r 88.1 0.37 8.1E-06 46.9 2.7 55 63-120 13-67 (480)
390 PRK05124 cysN sulfate adenylyl 88.0 0.25 5.4E-06 52.8 1.6 52 482-533 161-216 (474)
391 cd01886 EF-G Elongation factor 87.9 1 2.2E-05 44.3 5.7 41 480-525 115-158 (270)
392 PLN03126 Elongation factor Tu; 87.7 1.9 4.2E-05 46.0 8.0 76 446-530 169-250 (478)
393 KOG2932|consensus 87.2 0.25 5.5E-06 47.6 0.9 44 65-116 90-133 (389)
394 CHL00071 tufA elongation facto 86.7 0.68 1.5E-05 48.5 3.9 49 481-530 127-181 (409)
395 PF10186 Atg14: UV radiation r 86.7 22 0.00048 35.2 14.8 11 482-492 221-231 (302)
396 COG5256 TEF1 Translation elong 86.0 0.71 1.5E-05 47.1 3.4 48 483-532 147-201 (428)
397 PRK11637 AmiB activator; Provi 86.0 49 0.0011 34.8 18.2 11 526-537 416-426 (428)
398 cd04104 p47_IIGP_like p47 (47- 86.0 1.4 3.1E-05 40.9 5.4 63 481-544 107-186 (197)
399 PF10367 Vps39_2: Vacuolar sor 86.0 0.36 7.7E-06 40.0 1.1 34 62-98 75-108 (109)
400 PRK06569 F0F1 ATP synthase sub 85.4 26 0.00056 31.1 17.1 43 266-308 34-76 (155)
401 PF02891 zf-MIZ: MIZ/SP-RING z 85.0 0.39 8.5E-06 33.7 0.8 44 66-115 3-50 (50)
402 CHL00118 atpG ATP synthase CF0 85.0 27 0.00059 31.0 16.2 60 265-334 45-104 (156)
403 PRK00049 elongation factor Tu; 84.8 1.3 2.7E-05 46.3 4.8 48 481-529 127-180 (396)
404 PF07191 zinc-ribbons_6: zinc- 84.7 0.21 4.4E-06 37.4 -0.8 42 65-118 1-42 (70)
405 PF05605 zf-Di19: Drought indu 84.7 0.55 1.2E-05 33.6 1.4 40 64-115 1-40 (54)
406 cd04167 Snu114p Snu114p subfam 84.4 4.1 8.8E-05 38.3 7.7 14 481-494 123-136 (213)
407 PF15290 Syntaphilin: Golgi-lo 83.9 37 0.00079 32.8 13.4 36 270-305 69-104 (305)
408 COG1579 Zn-ribbon protein, pos 83.6 42 0.00092 32.1 16.2 26 283-308 48-73 (239)
409 smart00787 Spc7 Spc7 kinetocho 83.4 52 0.0011 33.0 18.5 32 356-387 233-264 (312)
410 PF10168 Nup88: Nuclear pore c 83.3 28 0.00061 39.2 14.7 6 87-92 305-310 (717)
411 KOG3850|consensus 83.2 53 0.0012 33.2 14.7 23 319-341 282-304 (455)
412 PRK09173 F0F1 ATP synthase sub 83.1 33 0.00072 30.5 15.3 64 266-339 26-89 (159)
413 PF07800 DUF1644: Protein of u 82.9 1.1 2.5E-05 39.2 2.9 21 64-89 1-21 (162)
414 PRK06231 F0F1 ATP synthase sub 82.4 43 0.00093 31.3 16.3 61 265-335 71-131 (205)
415 COG1217 TypA Predicted membran 82.4 2 4.2E-05 44.6 4.8 90 445-542 92-195 (603)
416 TIGR01837 PHA_granule_1 poly(h 82.3 27 0.00059 29.4 11.0 57 319-375 60-116 (118)
417 PRK14474 F0F1 ATP synthase sub 82.3 50 0.0011 32.0 15.1 61 265-335 28-88 (250)
418 PRK12739 elongation factor G; 82.2 3.1 6.7E-05 46.8 6.9 26 517-542 253-278 (691)
419 COG2895 CysN GTPases - Sulfate 82.1 1.2 2.6E-05 44.5 3.1 48 483-531 141-192 (431)
420 KOG0085|consensus 81.7 9.4 0.0002 35.9 8.5 87 456-543 241-350 (359)
421 COG3276 SelB Selenocysteine-sp 81.5 1.5 3.2E-05 45.2 3.6 85 444-541 73-161 (447)
422 KOG0826|consensus 81.4 0.64 1.4E-05 45.4 0.9 46 64-116 299-345 (357)
423 PLN03127 Elongation factor Tu; 81.1 1.8 3.9E-05 45.8 4.3 60 481-541 176-251 (447)
424 KOG2930|consensus 81.0 0.8 1.7E-05 36.7 1.2 30 87-118 80-109 (114)
425 KOG1940|consensus 81.0 0.91 2E-05 44.0 1.8 48 64-114 157-204 (276)
426 KOG1815|consensus 80.2 3.3 7.2E-05 43.8 5.9 51 63-117 68-126 (444)
427 PF11172 DUF2959: Protein of u 79.9 50 0.0011 30.4 12.7 42 247-288 9-54 (201)
428 cd04178 Nucleostemin_like Nucl 79.7 1.4 3.1E-05 40.0 2.6 15 481-495 30-44 (172)
429 PRK14475 F0F1 ATP synthase sub 79.7 46 0.001 29.9 15.1 61 265-335 33-93 (167)
430 KOG2114|consensus 79.3 1.9 4E-05 47.7 3.6 41 65-115 840-881 (933)
431 KOG4445|consensus 79.0 0.63 1.4E-05 44.8 0.0 58 64-125 114-194 (368)
432 PF07889 DUF1664: Protein of u 78.4 42 0.0009 28.7 12.3 31 355-385 89-119 (126)
433 PHA03096 p28-like protein; Pro 78.3 0.97 2.1E-05 44.4 1.1 50 66-115 179-232 (284)
434 TIGR01069 mutS2 MutS2 family p 78.3 58 0.0013 37.2 15.2 39 329-367 546-584 (771)
435 PRK00409 recombination and DNA 78.2 45 0.00098 38.1 14.4 45 328-372 550-594 (782)
436 PF08746 zf-RING-like: RING-li 77.6 2.6 5.6E-05 28.5 2.7 40 68-112 1-43 (43)
437 TIGR00484 EF-G translation elo 77.5 5.7 0.00012 44.7 7.1 43 480-527 126-171 (689)
438 cd04170 EF-G_bact Elongation f 77.5 1.7 3.8E-05 42.5 2.7 80 447-538 90-169 (268)
439 PF03854 zf-P11: P-11 zinc fin 76.8 1.1 2.4E-05 30.5 0.7 32 85-118 15-47 (50)
440 PF05384 DegS: Sensor protein 76.6 56 0.0012 29.2 16.4 34 354-387 97-130 (159)
441 KOG2129|consensus 76.4 96 0.0021 31.8 14.7 12 126-137 100-111 (552)
442 PRK09174 F0F1 ATP synthase sub 76.3 68 0.0015 30.0 16.2 43 266-308 77-119 (204)
443 PF05597 Phasin: Poly(hydroxya 76.2 50 0.0011 28.5 12.3 57 319-375 73-129 (132)
444 PRK00007 elongation factor G; 76.1 10 0.00022 42.7 8.6 27 516-542 254-280 (693)
445 smart00502 BBC B-Box C-termina 76.0 45 0.00098 27.8 15.4 32 319-350 47-78 (127)
446 PRK13454 F0F1 ATP synthase sub 76.0 63 0.0014 29.5 15.9 43 266-308 55-97 (181)
447 PF04111 APG6: Autophagy prote 75.9 75 0.0016 31.9 13.8 7 248-254 1-7 (314)
448 PF14569 zf-UDP: Zinc-binding 75.6 2.7 5.8E-05 32.0 2.5 52 65-119 9-64 (80)
449 CHL00019 atpF ATP synthase CF0 75.6 65 0.0014 29.5 16.4 61 265-335 47-107 (184)
450 KOG2034|consensus 75.6 1.1 2.5E-05 49.6 0.8 36 62-101 814-850 (911)
451 PF12128 DUF3584: Protein of u 75.4 1.9E+02 0.0041 35.1 19.3 6 389-394 769-774 (1201)
452 PRK07353 F0F1 ATP synthase sub 74.7 56 0.0012 28.3 16.3 44 265-308 28-71 (140)
453 PRK04023 DNA polymerase II lar 74.6 3.4 7.4E-05 46.8 4.1 104 1-119 565-676 (1121)
454 PHA02825 LAP/PHD finger-like p 74.4 3 6.5E-05 36.6 2.9 51 63-119 6-61 (162)
455 PF11172 DUF2959: Protein of u 74.2 73 0.0016 29.4 14.5 50 338-387 113-162 (201)
456 PF10146 zf-C4H2: Zinc finger- 74.1 83 0.0018 30.0 13.8 12 337-348 43-54 (230)
457 KOG1191|consensus 73.8 9.2 0.0002 40.1 6.7 98 444-543 348-451 (531)
458 PRK13428 F0F1 ATP synthase sub 73.8 1.2E+02 0.0026 32.2 15.3 43 266-308 25-67 (445)
459 PF13094 CENP-Q: CENP-Q, a CEN 73.6 51 0.0011 29.4 10.9 54 278-341 39-92 (160)
460 PRK07352 F0F1 ATP synthase sub 73.3 72 0.0016 28.9 16.3 60 266-335 43-102 (174)
461 PF04670 Gtr1_RagA: Gtr1/RagA 73.0 3.5 7.6E-05 39.4 3.4 94 444-543 76-177 (232)
462 PF09730 BicD: Microtubule-ass 72.9 1.7E+02 0.0036 32.9 17.4 101 292-406 613-715 (717)
463 PRK11820 hypothetical protein; 72.9 1E+02 0.0022 30.5 14.8 104 274-387 131-235 (288)
464 PF12128 DUF3584: Protein of u 72.8 1.7E+02 0.0037 35.5 18.1 34 275-308 609-642 (1201)
465 KOG1707|consensus 72.7 13 0.00028 39.9 7.5 74 456-542 504-583 (625)
466 PRK13453 F0F1 ATP synthase sub 72.7 74 0.0016 28.8 16.2 58 266-333 42-99 (173)
467 PRK13460 F0F1 ATP synthase sub 72.3 75 0.0016 28.7 16.2 59 266-334 40-98 (173)
468 PF05667 DUF812: Protein of un 72.3 1.3E+02 0.0029 33.0 15.5 7 3-9 45-51 (594)
469 KOG0994|consensus 71.9 1.5E+02 0.0033 34.8 15.6 23 69-97 1374-1396(1758)
470 KOG0461|consensus 71.6 5 0.00011 40.0 4.0 57 483-541 124-192 (522)
471 KOG0804|consensus 71.6 1.3E+02 0.0028 31.4 13.9 37 349-385 408-444 (493)
472 PF12906 RINGv: RING-variant d 71.0 1.8 3.8E-05 30.0 0.6 42 68-112 1-47 (47)
473 KOG0250|consensus 70.9 2.1E+02 0.0046 33.4 19.1 12 398-409 476-487 (1074)
474 KOG3039|consensus 70.6 2.5 5.4E-05 39.6 1.6 35 62-101 40-74 (303)
475 PRK14472 F0F1 ATP synthase sub 70.6 83 0.0018 28.5 16.3 61 265-335 41-101 (175)
476 PF00430 ATP-synt_B: ATP synth 70.1 56 0.0012 27.7 10.1 43 266-308 23-65 (132)
477 PF10498 IFT57: Intra-flagella 70.1 92 0.002 31.9 12.9 17 127-143 68-84 (359)
478 KOG0458|consensus 70.1 3.9 8.4E-05 43.6 3.1 50 483-533 317-373 (603)
479 KOG3905|consensus 69.9 4.4 9.5E-05 40.1 3.2 60 480-541 221-289 (473)
480 cd01885 EF2 EF2 (for archaea a 69.9 9.1 0.0002 36.4 5.4 14 481-494 125-138 (222)
481 PF06705 SF-assemblin: SF-asse 69.6 1.1E+02 0.0024 29.5 18.1 130 268-407 58-188 (247)
482 PRK09039 hypothetical protein; 69.5 1.4E+02 0.0029 30.5 16.8 33 355-387 137-169 (343)
483 KOG0129|consensus 69.2 2.5 5.5E-05 44.0 1.5 42 169-210 456-504 (520)
484 PRK14473 F0F1 ATP synthase sub 69.2 85 0.0018 28.0 16.2 59 265-333 31-89 (164)
485 PRK08475 F0F1 ATP synthase sub 69.1 88 0.0019 28.2 16.9 43 266-308 46-88 (167)
486 TIGR00570 cdk7 CDK-activating 69.0 1E+02 0.0022 30.7 12.4 15 185-199 25-39 (309)
487 PRK13455 F0F1 ATP synthase sub 68.8 94 0.002 28.4 15.3 42 267-308 52-93 (184)
488 KOG0972|consensus 68.8 1.2E+02 0.0026 29.6 15.2 50 355-407 298-348 (384)
489 PRK09174 F0F1 ATP synthase sub 68.7 1E+02 0.0022 28.8 16.2 85 270-364 74-158 (204)
490 PRK13454 F0F1 ATP synthase sub 68.3 96 0.0021 28.3 16.6 84 271-364 53-136 (181)
491 PRK14471 F0F1 ATP synthase sub 68.2 89 0.0019 27.9 16.3 61 265-335 31-91 (164)
492 PF12925 APP_E2: E2 domain of 67.4 46 0.001 30.6 9.0 41 319-359 67-107 (193)
493 PHA02862 5L protein; Provision 66.8 4.4 9.6E-05 34.9 2.3 47 67-119 4-55 (156)
494 PRK06568 F0F1 ATP synthase sub 66.8 93 0.002 27.6 15.4 44 265-308 27-70 (154)
495 KOG0466|consensus 66.8 3.9 8.5E-05 40.0 2.2 57 484-541 182-240 (466)
496 PF07889 DUF1664: Protein of u 66.7 73 0.0016 27.2 9.5 61 267-337 55-115 (126)
497 TIGR00255 conserved hypothetic 66.2 1.4E+02 0.0031 29.5 13.8 114 267-390 126-241 (291)
498 COG5258 GTPBP1 GTPase [General 66.0 21 0.00045 36.4 7.0 78 448-538 258-335 (527)
499 PF04012 PspA_IM30: PspA/IM30 65.9 1.2E+02 0.0026 28.5 14.2 106 269-384 19-124 (221)
500 KOG3268|consensus 65.9 4.4 9.6E-05 35.9 2.1 62 59-122 159-233 (234)
No 1
>KOG4367|consensus
Probab=99.97 E-value=1.3e-30 Score=250.99 Aligned_cols=291 Identities=23% Similarity=0.452 Sum_probs=256.8
Q ss_pred cCCcceeccccccccccCCCCcEEecCCCcchhhhHhhccc---------------------------------------
Q psy15732 62 LELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPI--------------------------------------- 102 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~--------------------------------------- 102 (550)
++++|.|+||..+|. + |++|+|+|+.|+.|......
T Consensus 1 meeelkc~vc~~f~~---e--piil~c~h~lc~~ca~~~~~~tp~~~spq~~~aa~s~vs~~~~~~~d~msl~~~ad~g~ 75 (699)
T KOG4367|consen 1 MEEELKCPVCGSFYR---E--PIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDYDYLDLDKMSLYSEADSGY 75 (699)
T ss_pred CcccccCceehhhcc---C--ceEeecccHHHHHHHHhhcccCCCCCCchhhhhcCCCCCccccccccceeeEeeccCCC
Confidence 468999999999999 9 99999999999999966220
Q ss_pred -------------------------------------------CCCccCCCCCCCcccCCCCCccCccccHHHHHHHHHH
Q psy15732 103 -------------------------------------------KDDTITCPFDRQPTPVGYSGVWGLKKNFALLELIEKI 139 (550)
Q Consensus 103 -------------------------------------------~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~~~ 139 (550)
.+..+.||.|.+.+...+.++.++|+|..+.++++.+
T Consensus 76 ~~~~~~a~~~~t~~~~~~~g~~~~p~am~pp~t~l~~~lap~~~~~~i~c~~c~rs~~~dd~~l~~~p~n~~le~vi~ry 155 (699)
T KOG4367|consen 76 GSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPVPRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRY 155 (699)
T ss_pred CccCCeeecCCCccccCCCCceeCCCCCCCchhhccccccCCCCCceEEcchhhhheEecccccccCchhhHHHHHHHHH
Confidence 1234579999999999999999999999999999999
Q ss_pred HhccccccccCCcchhhhhcccccccccccCCCCccccccccccccchhhhhHhhhhhcCCC-cccCCcccccCCCCC--
Q psy15732 140 QTNDEKATESIPLFSAELHIKCDFSLQLHIKCDEDESHIAVLYCTVCASHLCEQCASDSHAT-RTLQKHRRIPLSEKP-- 216 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~C~~~~~~~A~~~C~~C~~~lC~~C~~~h~~~-~~~~~H~~~~~~~~~-- 216 (550)
++.+ +.+.+|+. |+.- ...|+.+|..|+.+||+.|...-|.. .++++|.++++.+..
T Consensus 156 q~s~------------~aa~kcql-------ce~a-~k~a~v~ceqcdv~yc~pc~~~~hp~rgplakh~l~~~~~grvs 215 (699)
T KOG4367|consen 156 QQSK------------AAALKCQL-------CEKA-PKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVS 215 (699)
T ss_pred hhhh------------HHhhhhhh-------hcCC-hhhhhhhHhhCceEEechHHhccCCCCCchhhcccCCcccCcee
Confidence 7764 22234444 4433 36699999999999999999997776 689999999988753
Q ss_pred -----CCCCCCCCCcccccceeecccccCCccccccccccccccccccCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 217 -----REKPFCSSHPTNIAEFICLEEHCQTSAQYPPLMCFICKDYGRHKTHKHALVEIEAENLRSYVKNASSNVQHLIEE 291 (550)
Q Consensus 217 -----~~~~~C~~H~~~~l~~fC~~~~C~~~~~c~~~iC~~C~~~~~H~~H~~~~l~~a~~~~~~~l~~~l~~l~~~~~~ 291 (550)
+....|..|+.+...+||.. |. .++|..|...+.|..|.+..+..+..-.+.+|...++.|.++.++
T Consensus 216 ~~~s~r~~~~ct~h~~e~~smyc~~--ck------~pvc~~clee~khs~hevkal~~~~k~hksqls~al~~lsdrak~ 287 (699)
T KOG4367|consen 216 RRLSPRKVSTCTDHELENHSMYCVQ--CK------MPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKE 287 (699)
T ss_pred eccchhhhhhccCCCCCCceEEEEe--cC------ChHHHHHHHhhcccchhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 44568999999999999988 65 999999998889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 292 ITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHLRESLLVQEAAATSAVDMFVRERLGCLVQLHDDMGFWL 371 (550)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~~~~~l~~~~ 371 (550)
..+.+.+++...+.+++ +..+.+.-+....+.|++.|..|++.||..++++.+.+++.+++|+.....++
T Consensus 288 a~e~l~~lr~m~~~iq~----------n~~ef~a~l~~q~d~lid~l~~rk~qll~~v~~e~e~k~kv~r~qi~~ct~kl 357 (699)
T KOG4367|consen 288 AKEFLVQLRNMVQQIQE----------NSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKL 357 (699)
T ss_pred HHHHHHHHHHHHHHHHh----------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhheeeee
Confidence 99999999999999999 88899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCch-hHhhc
Q psy15732 372 QEVAKLYLKCEQMILQDDA-RVLTS 395 (550)
Q Consensus 372 ~~l~~~~~~~e~~l~~~~~-~~L~~ 395 (550)
.+-..++++.-+.++++|. -||+.
T Consensus 358 ~qtt~lme~cle~ike~dps~~lqi 382 (699)
T KOG4367|consen 358 RQTTGLMEYCLEVIKENDPSGFLQI 382 (699)
T ss_pred eehhhHHHHHHHHhccCCCcceeeh
Confidence 9999999999999999554 55553
No 2
>KOG0070|consensus
Probab=99.75 E-value=5.5e-18 Score=149.44 Aligned_cols=100 Identities=46% Similarity=0.743 Sum_probs=94.4
Q ss_pred eEEEEEeeCCCC---------------------CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHH
Q psy15732 444 EMRVVTLGLDSA---------------------DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESI 502 (550)
Q Consensus 444 ~~~~~~~~~d~~---------------------D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i 502 (550)
.+++.+|+..|+ |++|++||.+++++|+.++.++...++|+||+|||+|+++++++.+|
T Consensus 60 n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei 139 (181)
T KOG0070|consen 60 NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEI 139 (181)
T ss_pred ceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHH
Confidence 567788888888 99999999999999999999998899999999999999999999999
Q ss_pred HHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHHh
Q psy15732 503 TEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 503 ~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~~ 544 (550)
.+.+++..+. ++.|.+..|+|.+|+|+.|+++||.+.+.++
T Consensus 140 ~~~L~l~~l~-~~~w~iq~~~a~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 140 TNKLGLHSLR-SRNWHIQSTCAISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred HhHhhhhccC-CCCcEEeeccccccccHHHHHHHHHHHHhcc
Confidence 9999999996 8999999999999999999999999998764
No 3
>KOG0071|consensus
Probab=99.74 E-value=5.3e-18 Score=140.86 Aligned_cols=86 Identities=44% Similarity=0.798 Sum_probs=81.8
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|++|.+++++|+.+|+.+++++.+.++|+||+|||+|+++++++.||.+.++|+.++ ++.|.++++||.+|+|+.|+|.
T Consensus 93 Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r-~~~W~vqp~~a~~gdgL~egls 171 (180)
T KOG0071|consen 93 DSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIR-DRNWYVQPSCALSGDGLKEGLS 171 (180)
T ss_pred eccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcccccc-CCccEeeccccccchhHHHHHH
Confidence 677779999999999999999999999999999999999999999999999999985 9999999999999999999999
Q ss_pred HHHHHHH
Q psy15732 536 WLSRQLI 542 (550)
Q Consensus 536 ~l~~~~~ 542 (550)
||+..+.
T Consensus 172 wlsnn~~ 178 (180)
T KOG0071|consen 172 WLSNNLK 178 (180)
T ss_pred HHHhhcc
Confidence 9998764
No 4
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.64 E-value=2.2e-15 Score=138.58 Aligned_cols=86 Identities=49% Similarity=0.816 Sum_probs=80.7
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|++|.++|.+++.+|.+++.++...++|+||++||+|++++++.+++...++++.+..+++|.++.|||++|+||.|+|+
T Consensus 90 Dssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~ 169 (175)
T PF00025_consen 90 DSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLE 169 (175)
T ss_dssp ETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHH
T ss_pred ecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHH
Confidence 67788899999999999999988899999999999999999999999999999888557999999999999999999999
Q ss_pred HHHHHH
Q psy15732 536 WLSRQL 541 (550)
Q Consensus 536 ~l~~~~ 541 (550)
||.+++
T Consensus 170 WL~~~~ 175 (175)
T PF00025_consen 170 WLIEQI 175 (175)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999875
No 5
>KOG0073|consensus
Probab=99.62 E-value=2.8e-15 Score=128.52 Aligned_cols=100 Identities=40% Similarity=0.707 Sum_probs=92.4
Q ss_pred EEEEEeeCCCC---------------------CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHH
Q psy15732 445 MRVVTLGLDSA---------------------DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESIT 503 (550)
Q Consensus 445 ~~~~~~~~d~~---------------------D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~ 503 (550)
..+.+|++.|+ |++|+.+|++.+.+|.+++.+....+.|+||+|||+|++++++.++|.
T Consensus 60 ~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~ 139 (185)
T KOG0073|consen 60 YTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEIS 139 (185)
T ss_pred eEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHH
Confidence 45667777777 889999999999999999999889999999999999999999999999
Q ss_pred HhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHHh
Q psy15732 504 EAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 504 ~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~~ 544 (550)
..++|..+.++..|.++.|||.||+|+.++|+||...++.+
T Consensus 140 ~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 140 KALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred HhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHHH
Confidence 99999998669999999999999999999999999998763
No 6
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.59 E-value=9.5e-15 Score=135.13 Aligned_cols=88 Identities=48% Similarity=0.761 Sum_probs=79.8
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|++|.++|.++..|+..++......++|++|+|||+|++++.+.+++.+.++++.+. .+.|.+++|||+||+||+|+|+
T Consensus 93 D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~-~~~~~~~~~Sa~~g~gv~e~~~ 171 (181)
T PLN00223 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-QRHWYIQSTCATSGEGLYEGLD 171 (181)
T ss_pred eCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccC-CCceEEEeccCCCCCCHHHHHH
Confidence 788899999999999999876666789999999999999999999999999987774 7889999999999999999999
Q ss_pred HHHHHHHHh
Q psy15732 536 WLSRQLIAA 544 (550)
Q Consensus 536 ~l~~~~~~~ 544 (550)
||++.+.++
T Consensus 172 ~l~~~~~~~ 180 (181)
T PLN00223 172 WLSNNIANK 180 (181)
T ss_pred HHHHHHhhc
Confidence 999998765
No 7
>KOG0072|consensus
Probab=99.55 E-value=1.5e-14 Score=121.09 Aligned_cols=88 Identities=41% Similarity=0.642 Sum_probs=84.2
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|++|.+++.-+..+|..++..+++.+..++|++||+|.+.++...|+...|++..+. ++.|.+|.+||.+|+|++++++
T Consensus 94 Dssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk-~r~~~Iv~tSA~kg~Gld~~~D 172 (182)
T KOG0072|consen 94 DSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLK-DRIWQIVKTSAVKGEGLDPAMD 172 (182)
T ss_pred eccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHh-hheeEEEeeccccccCCcHHHH
Confidence 899999999999999999999999999999999999999999999999999999995 9999999999999999999999
Q ss_pred HHHHHHHHh
Q psy15732 536 WLSRQLIAA 544 (550)
Q Consensus 536 ~l~~~~~~~ 544 (550)
||.+.++.+
T Consensus 173 WL~~~l~~~ 181 (182)
T KOG0072|consen 173 WLQRPLKSR 181 (182)
T ss_pred HHHHHHhcc
Confidence 999988764
No 8
>KOG0075|consensus
Probab=99.53 E-value=4.5e-14 Score=118.58 Aligned_cols=98 Identities=24% Similarity=0.390 Sum_probs=93.2
Q ss_pred eEEEEEeeCCCC---------------------CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHH
Q psy15732 444 EMRVVTLGLDSA---------------------DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESI 502 (550)
Q Consensus 444 ~~~~~~~~~d~~---------------------D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i 502 (550)
.+.+.+|++.|+ |++|++.++.++++|+.++..+.+.++|+||+|||.|++++++..++
T Consensus 64 nvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~l 143 (186)
T KOG0075|consen 64 NVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIAL 143 (186)
T ss_pred ceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHH
Confidence 567889999998 99999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 503 TEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 503 ~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
.+.++|..+. +|.+..|.+|++...||+-..+||.++-.
T Consensus 144 i~rmgL~sit-dREvcC~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 144 IERMGLSSIT-DREVCCFSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred HHHhCccccc-cceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence 9999999995 99999999999999999999999998754
No 9
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.53 E-value=5.2e-14 Score=129.52 Aligned_cols=86 Identities=47% Similarity=0.765 Sum_probs=77.1
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|++++++|+++..|+..++.+....++|++|++||+||++..+.+++.+.+++..+. .+.+.++++||++|+||+++|+
T Consensus 89 D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~-~~~~~~~~~Sa~~g~gv~e~~~ 167 (175)
T smart00177 89 DSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIR-DRNWYIQPTCATSGDGLYEGLT 167 (175)
T ss_pred ECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccC-CCcEEEEEeeCCCCCCHHHHHH
Confidence 888999999999999999876556789999999999999888889999999887764 7889999999999999999999
Q ss_pred HHHHHHH
Q psy15732 536 WLSRQLI 542 (550)
Q Consensus 536 ~l~~~~~ 542 (550)
||++.+.
T Consensus 168 ~l~~~~~ 174 (175)
T smart00177 168 WLSNNLK 174 (175)
T ss_pred HHHHHhc
Confidence 9998764
No 10
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.53 E-value=8.8e-14 Score=127.24 Aligned_cols=94 Identities=63% Similarity=1.038 Sum_probs=81.6
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|++++++|.++..|+..++.+....++|++|++||+|+.+..+.+++.+.+.+..+...+.+.+++|||++|.||+++|+
T Consensus 75 D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~ 154 (169)
T cd04158 75 DSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLD 154 (169)
T ss_pred eCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHH
Confidence 77888999999999999987655667999999999999888888999888876554324578999999999999999999
Q ss_pred HHHHHHHHhcCCCC
Q psy15732 536 WLSRQLIAAGVNDM 549 (550)
Q Consensus 536 ~l~~~~~~~~~~~~ 549 (550)
||++.+....++|.
T Consensus 155 ~l~~~~~~~~~~~~ 168 (169)
T cd04158 155 WLSRQLVAAGVLDV 168 (169)
T ss_pred HHHHHHhhcccccc
Confidence 99999998888875
No 11
>KOG2177|consensus
Probab=99.51 E-value=2.8e-13 Score=138.04 Aligned_cols=127 Identities=29% Similarity=0.623 Sum_probs=103.2
Q ss_pred hhccCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHHHH
Q psy15732 59 ILILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELIEK 138 (550)
Q Consensus 59 ~~~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~~ 138 (550)
...+.+++.|+||+++|. + |++++|||+||..|+..+|. ..+.||.||. ... .++.|..+.++++.
T Consensus 7 ~~~~~~~~~C~iC~~~~~---~--p~~l~C~H~~c~~C~~~~~~--~~~~Cp~cr~-~~~------~~~~n~~l~~~~~~ 72 (386)
T KOG2177|consen 7 LEVLQEELTCPICLEYFR---E--PVLLPCGHNFCRACLTRSWE--GPLSCPVCRP-PSR------NLRPNVLLANLVER 72 (386)
T ss_pred hhhccccccChhhHHHhh---c--CccccccchHhHHHHHHhcC--CCcCCcccCC-chh------ccCccHHHHHHHHH
Confidence 345678999999999999 9 99999999999999999988 6689999995 222 47799999999999
Q ss_pred HHhccccccccCCcchhhhhcccccccccccCCCCccccccccccccchhhhhHhhhhhcCCCcccCCcccccCCCCCCC
Q psy15732 139 IQTNDEKATESIPLFSAELHIKCDFSLQLHIKCDEDESHIAVLYCTVCASHLCEQCASDSHATRTLQKHRRIPLSEKPRE 218 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~C~~~~~~~A~~~C~~C~~~lC~~C~~~h~~~~~~~~H~~~~~~~~~~~ 218 (550)
+........ ....
T Consensus 73 ~~~~~~~~~-------------------------------------------------------------------~~~~ 85 (386)
T KOG2177|consen 73 LRQLRLSRP-------------------------------------------------------------------LGSK 85 (386)
T ss_pred HHhcCCccc-------------------------------------------------------------------cccc
Confidence 887641100 0011
Q ss_pred CCCCCCCcccccceeecccccCCccccccccccccccccccCCCCcccHHHHHHHHH
Q psy15732 219 KPFCSSHPTNIAEFICLEEHCQTSAQYPPLMCFICKDYGRHKTHKHALVEIEAENLR 275 (550)
Q Consensus 219 ~~~C~~H~~~~l~~fC~~~~C~~~~~c~~~iC~~C~~~~~H~~H~~~~l~~a~~~~~ 275 (550)
...|..|.+ .+.+||.. |. .++|..|...+.|.+|.+.++++++...+
T Consensus 86 ~~~c~~~~~-~~~~~c~~--~~------~~~c~~c~~~~~h~~h~~~~~~~~~~~~~ 133 (386)
T KOG2177|consen 86 EELCEKHGE-ELKLFCEE--DE------KLLCVLCRESGEHRGHPVLPLEEAAQEYR 133 (386)
T ss_pred chhhhhcCC-cceEEecc--cc------cccCCCCCCcccccCCccccHHHHHHHHH
Confidence 127899998 59999988 43 89999999668999999999999998888
No 12
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.50 E-value=9.9e-14 Score=126.74 Aligned_cols=83 Identities=46% Similarity=0.790 Sum_probs=73.6
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|++++.+|.++..|+.+++.+....++|++|++||+|+.+.++.+++.+.+++..+. .+.+.+++|||++|+||+++|+
T Consensus 85 D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~-~~~~~~~~~SAk~g~gv~~~~~ 163 (168)
T cd04149 85 DSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIR-DRNWYVQPSCATSGDGLYEGLT 163 (168)
T ss_pred eCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccC-CCcEEEEEeeCCCCCChHHHHH
Confidence 788889999999999999876555789999999999998888899999999876664 6778999999999999999999
Q ss_pred HHHH
Q psy15732 536 WLSR 539 (550)
Q Consensus 536 ~l~~ 539 (550)
||++
T Consensus 164 ~l~~ 167 (168)
T cd04149 164 WLSS 167 (168)
T ss_pred HHhc
Confidence 9975
No 13
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.48 E-value=2.8e-13 Score=125.39 Aligned_cols=88 Identities=44% Similarity=0.779 Sum_probs=77.4
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|++|+++|.++..++.+++.+....++|++|++||+|+++..+.+++...+++..+. .+.|.++++||++|+||+++|+
T Consensus 93 D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~-~~~~~~~~~Sa~tg~gv~e~~~ 171 (182)
T PTZ00133 93 DSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVR-QRNWYIQGCCATTAQGLYEGLD 171 (182)
T ss_pred eCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCccc-CCcEEEEeeeCCCCCCHHHHHH
Confidence 778899999999999998876556679999999999998888888999999987664 6789999999999999999999
Q ss_pred HHHHHHHHh
Q psy15732 536 WLSRQLIAA 544 (550)
Q Consensus 536 ~l~~~~~~~ 544 (550)
||++.+.++
T Consensus 172 ~l~~~i~~~ 180 (182)
T PTZ00133 172 WLSANIKKS 180 (182)
T ss_pred HHHHHHHHh
Confidence 999988664
No 14
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.47 E-value=2.8e-13 Score=122.60 Aligned_cols=83 Identities=51% Similarity=0.821 Sum_probs=72.6
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|+++.++|.++..|+.+++.+....++|++|++||+||++....+++.+.+++..+. .+.+.++++||++|.||+++|+
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~-~~~~~~~~~Sak~g~gv~~~~~ 154 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLR-NRNWYIQATCATSGDGLYEGLD 154 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccC-CCCEEEEEeeCCCCCCHHHHHH
Confidence 788889999999999998876555679999999999998777778888888876663 7889999999999999999999
Q ss_pred HHHH
Q psy15732 536 WLSR 539 (550)
Q Consensus 536 ~l~~ 539 (550)
||++
T Consensus 155 ~l~~ 158 (159)
T cd04150 155 WLSN 158 (159)
T ss_pred HHhc
Confidence 9975
No 15
>KOG0076|consensus
Probab=99.47 E-value=4.6e-14 Score=122.35 Aligned_cols=89 Identities=33% Similarity=0.577 Sum_probs=81.6
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|++|++||++.+..++.++.+....++|+||++||+|+++++...||...+++-..-..+...++++||.+|+||+|+..
T Consensus 101 Da~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~ 180 (197)
T KOG0076|consen 101 DATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIE 180 (197)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHH
Confidence 89999999999999999999999999999999999999999999999999984333247889999999999999999999
Q ss_pred HHHHHHHHh
Q psy15732 536 WLSRQLIAA 544 (550)
Q Consensus 536 ~l~~~~~~~ 544 (550)
|+...+.++
T Consensus 181 w~v~~~~kn 189 (197)
T KOG0076|consen 181 WLVKKLEKN 189 (197)
T ss_pred HHHHHHhhc
Confidence 999998776
No 16
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.45 E-value=5e-13 Score=122.00 Aligned_cols=84 Identities=33% Similarity=0.501 Sum_probs=74.2
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccC--CCcEEEEEecccCC------
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCC--GRSWHIQACNAQSG------ 527 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~--~~~~~~~~~SA~~g------ 527 (550)
|+++..+|+++..|+..++.+....++|++||+||+|++++.+..++.+.++++.+.. ..+|.+++|||++|
T Consensus 75 D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~ 154 (167)
T cd04161 75 DSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKID 154 (167)
T ss_pred ECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccc
Confidence 7788889999999999998776667899999999999999999999999999877642 34689999999999
Q ss_pred CCHHHHHHHHHH
Q psy15732 528 EGLHEGLDWLSR 539 (550)
Q Consensus 528 ~gi~e~f~~l~~ 539 (550)
.||.++|+||.+
T Consensus 155 ~g~~~~~~wl~~ 166 (167)
T cd04161 155 PSIVEGLRWLLA 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 899999999974
No 17
>KOG0092|consensus
Probab=99.42 E-value=4.6e-13 Score=118.67 Aligned_cols=94 Identities=16% Similarity=0.211 Sum_probs=82.0
Q ss_pred eEEEEEeeCCCC---------------------CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHH
Q psy15732 444 EMRVVTLGLDSA---------------------DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVE 500 (550)
Q Consensus 444 ~~~~~~~~~d~~---------------------D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~ 500 (550)
.+++.+|+..|+ |+|+.++|..++.|+.++-.... +++-|.|+|||.||.. ++..+
T Consensus 53 ~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ 131 (200)
T KOG0092|consen 53 TIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFE 131 (200)
T ss_pred EEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHH
Confidence 577788888887 99999999999999999966644 8899999999999955 77888
Q ss_pred HHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHHh
Q psy15732 501 SITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 501 ~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~~ 544 (550)
|...+.+ +.+..||+||||||.||+++|..|++.+...
T Consensus 132 ea~~yAe------~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 132 EAQAYAE------SQGLLFFETSAKTGENVNEIFQAIAEKLPCS 169 (200)
T ss_pred HHHHHHH------hcCCEEEEEecccccCHHHHHHHHHHhccCc
Confidence 8888777 5667999999999999999999999988554
No 18
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.39 E-value=2.2e-12 Score=119.76 Aligned_cols=85 Identities=32% Similarity=0.512 Sum_probs=74.8
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCccc------CCCcEEEEEecccCCCC
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLC------CGRSWHIQACNAQSGEG 529 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~------~~~~~~~~~~SA~~g~g 529 (550)
|++++++|.++..|+.++++.....++|++|++||+|+++.++.+++.+.+++.... ..+.+.+++|||++|+|
T Consensus 93 D~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g 172 (184)
T smart00178 93 DAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMG 172 (184)
T ss_pred ECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCC
Confidence 677889999999999999876666789999999999999899999999999976642 23789999999999999
Q ss_pred HHHHHHHHHHH
Q psy15732 530 LHEGLDWLSRQ 540 (550)
Q Consensus 530 i~e~f~~l~~~ 540 (550)
++++|+||.+.
T Consensus 173 ~~~~~~wl~~~ 183 (184)
T smart00178 173 YGEGFKWLSQY 183 (184)
T ss_pred hHHHHHHHHhh
Confidence 99999999865
No 19
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.38 E-value=2.4e-12 Score=120.72 Aligned_cols=96 Identities=16% Similarity=0.084 Sum_probs=73.6
Q ss_pred eEEEEEeeCCCC---------------------CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHH
Q psy15732 444 EMRVVTLGLDSA---------------------DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVE 500 (550)
Q Consensus 444 ~~~~~~~~~d~~---------------------D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~ 500 (550)
.+.+.+|++.|+ |++|+++|+++..|+..+. .....++|++|||||+||.. .++.+
T Consensus 48 ~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~-~~~~~~~piilVgNK~DL~~~~~v~~~ 126 (202)
T cd04120 48 KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMID-KYASEDAELLLVGNKLDCETDREISRQ 126 (202)
T ss_pred EEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHH-HhCCCCCcEEEEEECcccccccccCHH
Confidence 366677887776 9999999999999988664 33346799999999999953 34445
Q ss_pred HHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhc
Q psy15732 501 SITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIAAG 545 (550)
Q Consensus 501 ~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~~~ 545 (550)
+..+... ....+.|++|||++|.||+++|+||++.+.+..
T Consensus 127 ~~~~~a~-----~~~~~~~~etSAktg~gV~e~F~~l~~~~~~~~ 166 (202)
T cd04120 127 QGEKFAQ-----QITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 166 (202)
T ss_pred HHHHHHH-----hcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhC
Confidence 5444332 112468999999999999999999999887653
No 20
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.38 E-value=2.4e-12 Score=119.62 Aligned_cols=92 Identities=8% Similarity=0.065 Sum_probs=75.9
Q ss_pred eEEEEEeeCCCC---------------------CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHH
Q psy15732 444 EMRVVTLGLDSA---------------------DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVE 500 (550)
Q Consensus 444 ~~~~~~~~~d~~---------------------D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~ 500 (550)
.+.+.+|++.|. |++++.+|+++..|+.++.... .++|++|||||.||.. .++.+
T Consensus 54 ~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~ 131 (189)
T cd04121 54 RVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATE 131 (189)
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHH
Confidence 456677777766 9999999999999999996543 5799999999999954 56777
Q ss_pred HHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 501 SITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 501 ~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
++.+.+. ...+.|++|||++|.||+++|+||++.+..
T Consensus 132 ~~~~~a~------~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~ 168 (189)
T cd04121 132 QAQAYAE------RNGMTFFEVSPLCNFNITESFTELARIVLM 168 (189)
T ss_pred HHHHHHH------HcCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 7776665 345789999999999999999999987754
No 21
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.36 E-value=4.5e-12 Score=116.50 Aligned_cols=83 Identities=49% Similarity=0.857 Sum_probs=72.6
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|+++.++|.++..|+..++++....++|++|++||+|+++..+.+++.+.+++.... ...+.++++||++|+||+++|+
T Consensus 91 D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~-~~~~~~~~~SA~~g~gi~e~~~ 169 (174)
T cd04153 91 DSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIR-DHTWHIQGCCALTGEGLPEGLD 169 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccc-CCceEEEecccCCCCCHHHHHH
Confidence 778889999999999999877656789999999999998877888898888866553 5678999999999999999999
Q ss_pred HHHH
Q psy15732 536 WLSR 539 (550)
Q Consensus 536 ~l~~ 539 (550)
||++
T Consensus 170 ~l~~ 173 (174)
T cd04153 170 WIAS 173 (174)
T ss_pred HHhc
Confidence 9975
No 22
>KOG0074|consensus
Probab=99.35 E-value=5.7e-13 Score=111.22 Aligned_cols=99 Identities=35% Similarity=0.585 Sum_probs=90.4
Q ss_pred eEEEEEeeCCCC---------------------CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHH
Q psy15732 444 EMRVVTLGLDSA---------------------DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESI 502 (550)
Q Consensus 444 ~~~~~~~~~d~~---------------------D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i 502 (550)
.+++.+|++.|+ |++|..+|+|.-.++-++++...+..+|++|.+||+|+-.++..+++
T Consensus 61 ~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eei 140 (185)
T KOG0074|consen 61 TFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEI 140 (185)
T ss_pred cEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHH
Confidence 366677777777 89999999999999999998888899999999999999999999999
Q ss_pred HHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 503 TEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 503 ~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
...+++..+. +|.|++.+|||.+++|+.++.+|+...+..
T Consensus 141 a~klnl~~lr-dRswhIq~csals~eg~~dg~~wv~sn~~~ 180 (185)
T KOG0074|consen 141 ALKLNLAGLR-DRSWHIQECSALSLEGSTDGSDWVQSNPET 180 (185)
T ss_pred HHhcchhhhh-hceEEeeeCccccccCccCcchhhhcCCCC
Confidence 9999999996 999999999999999999999999887653
No 23
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.33 E-value=7.6e-12 Score=113.11 Aligned_cols=84 Identities=44% Similarity=0.764 Sum_probs=71.9
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|+++..+|.++..|+.+++.+....++|++|++||+|++...+.+++...+++..+...+.+.+++|||++|+||+++|+
T Consensus 76 D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 155 (160)
T cd04156 76 DSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFR 155 (160)
T ss_pred ECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHH
Confidence 56777899999999999887665578999999999999877778889888876666445678999999999999999999
Q ss_pred HHHH
Q psy15732 536 WLSR 539 (550)
Q Consensus 536 ~l~~ 539 (550)
||++
T Consensus 156 ~i~~ 159 (160)
T cd04156 156 KLAS 159 (160)
T ss_pred HHhc
Confidence 9974
No 24
>KOG4185|consensus
Probab=99.32 E-value=6.8e-11 Score=118.18 Aligned_cols=216 Identities=29% Similarity=0.552 Sum_probs=149.9
Q ss_pred cceecccccccccc-CCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHHHHHHhcc
Q psy15732 65 ALECRVCEDIFLTQ-GDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELIEKIQTND 143 (550)
Q Consensus 65 ~l~C~iC~~~~~~~-~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~~~~~~~ 143 (550)
.+.|-||.+.|... ++|+|+.|.|||+||..|+...... ....||+||..+..+...+..+.+|+.+..+++......
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~-~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~~~~~ 81 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGN-SRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHMKKTT 81 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcC-ceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHHhccc
Confidence 57899999999974 5789999999999999999988765 456689999999888888999999999999998873321
Q ss_pred ccccccCCcchhhhhcccccccccccCCCCccccccccccccchhhhhHhhhhhcCCCcccCCcccccCCCCCCCCCCCC
Q psy15732 144 EKATESIPLFSAELHIKCDFSLQLHIKCDEDESHIAVLYCTVCASHLCEQCASDSHATRTLQKHRRIPLSEKPREKPFCS 223 (550)
Q Consensus 144 ~~~~~~~~~~~~~~~~~c~~~~~~~~~C~~~~~~~A~~~C~~C~~~lC~~C~~~h~~~~~~~~H~~~~~~~~~~~~~~C~ 223 (550)
.... ......+.|.
T Consensus 82 ~~~~------------------------------------------------------------------~~~~~~~~c~ 95 (296)
T KOG4185|consen 82 VEEK------------------------------------------------------------------GEADSPPKCK 95 (296)
T ss_pred cccc------------------------------------------------------------------CcccCCcccc
Confidence 0000 0001223377
Q ss_pred CCcccccceeecccccCCccccccccccccccccccCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 224 SHPTNIAEFICLEEHCQTSAQYPPLMCFICKDYGRHKTHKHALVEIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVV 303 (550)
Q Consensus 224 ~H~~~~l~~fC~~~~C~~~~~c~~~iC~~C~~~~~H~~H~~~~l~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 303 (550)
.|......+.|....|. +.+..+|..|...+.|.+|.-..+...+...+..+... .+......++.....++...
T Consensus 96 ~~~~nl~~~vc~~~~~~---~~~~~~c~t~~~~~~~~~~~k~ll~~e~~~l~~~l~~~--~~~~~~~~~~~~~~~l~~a~ 170 (296)
T KOG4185|consen 96 EHPYNLAEFVCVEPDCS---SKDKLMCRTCEEFGIHKGHTKGLLQSEAAKLRESLEKR--KLQLNISKIDEELEELREAQ 170 (296)
T ss_pred cCcccccceeecCCCcc---hhhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHhH--HHHHhHHHHhHHHHHHHHHH
Confidence 88876777777654443 34579999999888999998777766666666555554 33444444555555555444
Q ss_pred HHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 304 SKIEGNTGPSGTEPGTGDQARAKVHAYFNHLRESLLVQEAAATSAVDMFVRERLGC 359 (550)
Q Consensus 304 ~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~ 359 (550)
..... ......+...++...+..++..+..++++..+.+-.........
T Consensus 171 ~~~~~-------~~~~~~~~~~ei~~~~~~~~~~~~~~e~~~~~~~c~ic~~~~~~ 219 (296)
T KOG4185|consen 171 LKNKE-------VGELFQEKVDEIKRHYDKIRELVDEREKEIIEKLCEICERIYSE 219 (296)
T ss_pred hcccc-------hhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhc
Confidence 33332 11145566677778888888888888887776666555555543
No 25
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.31 E-value=1.3e-11 Score=111.73 Aligned_cols=83 Identities=39% Similarity=0.662 Sum_probs=69.2
Q ss_pred CccchhhHHHHHHHHHHHhhccCc--CCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKEL--KDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~--~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++..+|..+..|+..++..... .++|++|++||+|+.++...+++.+.+++..+. ...+.++++||++|.||+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~-~~~~~~~~~Sa~~g~gv~~~ 155 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIK-DKPWHIFASNALTGEGLDEG 155 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCcccc-CceEEEEEeeCCCCCchHHH
Confidence 677888999999999988765432 479999999999998877778888888765542 56788999999999999999
Q ss_pred HHHHHH
Q psy15732 534 LDWLSR 539 (550)
Q Consensus 534 f~~l~~ 539 (550)
|+||++
T Consensus 156 ~~~l~~ 161 (162)
T cd04157 156 VQWLQA 161 (162)
T ss_pred HHHHhc
Confidence 999975
No 26
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.31 E-value=1.3e-11 Score=113.39 Aligned_cols=83 Identities=48% Similarity=0.839 Sum_probs=71.4
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|+++..+|.++..|+..++......++|++|++||+|+.+....+++.+.+++..+. .+.+.++++||++|.||+++|+
T Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l~~ 168 (173)
T cd04154 90 DSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKIS-SHHWRIQPCSAVTGEGLLQGID 168 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccC-CCceEEEeccCCCCcCHHHHHH
Confidence 778888999999999998766555789999999999998777888888888765442 5688999999999999999999
Q ss_pred HHHH
Q psy15732 536 WLSR 539 (550)
Q Consensus 536 ~l~~ 539 (550)
||++
T Consensus 169 ~l~~ 172 (173)
T cd04154 169 WLVD 172 (173)
T ss_pred HHhc
Confidence 9975
No 27
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.29 E-value=7.2e-12 Score=113.13 Aligned_cols=80 Identities=8% Similarity=0.078 Sum_probs=63.3
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC----CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG----CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLH 531 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~----~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~ 531 (550)
|++|+++|+++..|+..+.......++|++|+|||.||.. .++.++..+... ..+.+.|++|||++|.||+
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~-----~~~~~~~~e~SAk~~~~i~ 148 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCA-----DMKRCSYYETCATYGLNVE 148 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHH-----HhCCCcEEEEecCCCCCHH
Confidence 8999999999999999997765557799999999999842 234444433322 1235899999999999999
Q ss_pred HHHHHHHHH
Q psy15732 532 EGLDWLSRQ 540 (550)
Q Consensus 532 e~f~~l~~~ 540 (550)
++|+++++.
T Consensus 149 ~~f~~~~~~ 157 (158)
T cd04103 149 RVFQEAAQK 157 (158)
T ss_pred HHHHHHHhh
Confidence 999999865
No 28
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.29 E-value=1.8e-11 Score=114.15 Aligned_cols=85 Identities=34% Similarity=0.605 Sum_probs=72.1
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCccc----------CCCcEEEEEeccc
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLC----------CGRSWHIQACNAQ 525 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~----------~~~~~~~~~~SA~ 525 (550)
|+++.++|.++..|+..++......++|++|++||+|+...++.+++.+.+++..+. ..+.+.+++|||+
T Consensus 95 D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 174 (190)
T cd00879 95 DAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVV 174 (190)
T ss_pred ECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEec
Confidence 667788999999999998876556779999999999998888999999999864431 1256789999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy15732 526 SGEGLHEGLDWLSRQ 540 (550)
Q Consensus 526 ~g~gi~e~f~~l~~~ 540 (550)
+|+||+|+|+||++.
T Consensus 175 ~~~gv~e~~~~l~~~ 189 (190)
T cd00879 175 KRQGYGEAFRWLSQY 189 (190)
T ss_pred CCCChHHHHHHHHhh
Confidence 999999999999875
No 29
>PTZ00099 rab6; Provisional
Probab=99.28 E-value=2e-11 Score=112.09 Aligned_cols=93 Identities=15% Similarity=0.196 Sum_probs=73.4
Q ss_pred eEEEEEeeCCCC---------------------CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHH
Q psy15732 444 EMRVVTLGLDSA---------------------DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVE 500 (550)
Q Consensus 444 ~~~~~~~~~d~~---------------------D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~ 500 (550)
.+.+.+|++.|. |++++++|+.+..|+..++... ..++|++|||||+||.. .++.+
T Consensus 28 ~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~~piilVgNK~DL~~~~~v~~~ 106 (176)
T PTZ00099 28 PVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKDVIIALVGNKTDLGDLRKVTYE 106 (176)
T ss_pred EEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccCCCHH
Confidence 356677777766 8999999999999999887653 35789999999999954 34555
Q ss_pred HHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 501 SITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 501 ~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
+...... ..++.|++|||++|.||+++|+||++.+.+
T Consensus 107 e~~~~~~------~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 107 EGMQKAQ------EYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred HHHHHHH------HcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5544333 345678999999999999999999998865
No 30
>KOG0078|consensus
Probab=99.28 E-value=2.6e-11 Score=109.72 Aligned_cols=97 Identities=11% Similarity=0.117 Sum_probs=80.4
Q ss_pred CcceEEEEEeeCCCC---------------------CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CC
Q psy15732 441 PKMEMRVVTLGLDSA---------------------DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CE 497 (550)
Q Consensus 441 ~k~~~~~~~~~~d~~---------------------D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~ 497 (550)
+...+.+.+|+..|+ |+|+..+|+....|+..+-++. ..++|+++||||+|+.. .+
T Consensus 57 ~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a-~~~v~~~LvGNK~D~~~~R~V 135 (207)
T KOG0078|consen 57 DGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHA-SDDVVKILVGNKCDLEEKRQV 135 (207)
T ss_pred CCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhC-CCCCcEEEeeccccccccccc
Confidence 334677888998888 9999999999999999986664 46899999999999965 55
Q ss_pred CHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHHh
Q psy15732 498 TVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 498 ~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~~ 544 (550)
+.+.-++.+. ..++.|++||||+|.||+|+|..|+..+.++
T Consensus 136 ~~e~ge~lA~------e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k 176 (207)
T KOG0078|consen 136 SKERGEALAR------EYGIKFFETSAKTNFNIEEAFLSLARDILQK 176 (207)
T ss_pred cHHHHHHHHH------HhCCeEEEccccCCCCHHHHHHHHHHHHHhh
Confidence 6555555443 4567999999999999999999999999864
No 31
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.27 E-value=3.9e-11 Score=111.19 Aligned_cols=88 Identities=39% Similarity=0.595 Sum_probs=73.0
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|++|.++|..+..|+.++.......++|++|++||+|+....+.+++...+++..+.....+.++++||++|+||+++|+
T Consensus 84 D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 163 (183)
T cd04152 84 DSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLE 163 (183)
T ss_pred ECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHH
Confidence 77888899999999988876544567999999999999877788888887776554323457899999999999999999
Q ss_pred HHHHHHHH
Q psy15732 536 WLSRQLIA 543 (550)
Q Consensus 536 ~l~~~~~~ 543 (550)
||++.+.+
T Consensus 164 ~l~~~l~~ 171 (183)
T cd04152 164 KLYEMILK 171 (183)
T ss_pred HHHHHHHH
Confidence 99998854
No 32
>KOG0098|consensus
Probab=99.26 E-value=2.4e-11 Score=106.79 Aligned_cols=93 Identities=12% Similarity=0.146 Sum_probs=81.5
Q ss_pred eEEEEEeeCCCC---------------------CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCC--CCCCHH
Q psy15732 444 EMRVVTLGLDSA---------------------DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIP--GCETVE 500 (550)
Q Consensus 444 ~~~~~~~~~d~~---------------------D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~--~~~~~~ 500 (550)
.+++.+|+..|. |++.+++|.....||.++.++. ..|+.|+++|||+||. ++++.+
T Consensus 54 ~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR~Vs~E 132 (216)
T KOG0098|consen 54 QIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARREVSKE 132 (216)
T ss_pred eEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccccccHH
Confidence 678889999888 9999999999999999998774 5889999999999994 468889
Q ss_pred HHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 501 SITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 501 ~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
|-+++.. .....+++|||+||+||+|+|.-.+..+-.
T Consensus 133 EGeaFA~------ehgLifmETSakt~~~VEEaF~nta~~Iy~ 169 (216)
T KOG0098|consen 133 EGEAFAR------EHGLIFMETSAKTAENVEEAFINTAKEIYR 169 (216)
T ss_pred HHHHHHH------HcCceeehhhhhhhhhHHHHHHHHHHHHHH
Confidence 9888887 455688999999999999999999887744
No 33
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.26 E-value=2.4e-11 Score=110.46 Aligned_cols=82 Identities=38% Similarity=0.583 Sum_probs=72.5
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccC------CCC
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQS------GEG 529 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~------g~g 529 (550)
|++|..+|.+++.|+.+++... .++|++|++||+|++++....++...+++..+...+.|.+++|||++ |+|
T Consensus 76 D~t~~~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~ 153 (164)
T cd04162 76 DSADSERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEA 153 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHH
Confidence 7788889999999999987553 67999999999999988888999999988888767889999999999 999
Q ss_pred HHHHHHHHHH
Q psy15732 530 LHEGLDWLSR 539 (550)
Q Consensus 530 i~e~f~~l~~ 539 (550)
|+++|+.|..
T Consensus 154 v~~~~~~~~~ 163 (164)
T cd04162 154 VKDLLSQLIN 163 (164)
T ss_pred HHHHHHHHhc
Confidence 9999998763
No 34
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.26 E-value=2.8e-12 Score=86.83 Aligned_cols=40 Identities=43% Similarity=0.922 Sum_probs=31.4
Q ss_pred eccccccccccCCCCcEEecCCCcchhhhHhhcccCCC--ccCCCCC
Q psy15732 68 CRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDD--TITCPFD 112 (550)
Q Consensus 68 C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~--~~~CP~C 112 (550)
||||+++|. + |++|+|||+||..||..+|.... .+.||.|
T Consensus 1 CpiC~~~~~---~--Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK---D--PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S---S--EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC---C--ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999 9 99999999999999999998432 2689987
No 35
>KOG0084|consensus
Probab=99.25 E-value=2.9e-11 Score=107.76 Aligned_cols=97 Identities=13% Similarity=0.110 Sum_probs=79.2
Q ss_pred eEEEEEeeCCCC---------------------CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCHH
Q psy15732 444 EMRVVTLGLDSA---------------------DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETVE 500 (550)
Q Consensus 444 ~~~~~~~~~d~~---------------------D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~ 500 (550)
.+.+.+|+..|+ |+|+.++|+....|+.++-.+. ..++|+|+||||+|+... ++.+
T Consensus 57 ~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~-~~~v~~lLVGNK~Dl~~~~~v~~~ 135 (205)
T KOG0084|consen 57 TIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYA-SENVPKLLVGNKCDLTEKRVVSTE 135 (205)
T ss_pred EEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhc-cCCCCeEEEeeccccHhheecCHH
Confidence 456788888887 9999999999999999996664 477999999999999654 5666
Q ss_pred HHHHhcCCCcccCCCcEE-EEEecccCCCCHHHHHHHHHHHHHHhcCC
Q psy15732 501 SITEAFDLYKLCCGRSWH-IQACNAQSGEGLHEGLDWLSRQLIAAGVN 547 (550)
Q Consensus 501 ~i~~~~~l~~~~~~~~~~-~~~~SA~~g~gi~e~f~~l~~~~~~~~~~ 547 (550)
+...+... .++. +++||||++.||+++|..|+..+..+..+
T Consensus 136 ~a~~fa~~------~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~~~ 177 (205)
T KOG0084|consen 136 EAQEFADE------LGIPIFLETSAKDSTNVEDAFLTLAKELKQRKGL 177 (205)
T ss_pred HHHHHHHh------cCCcceeecccCCccCHHHHHHHHHHHHHHhccc
Confidence 66665553 2334 99999999999999999999999876443
No 36
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.25 E-value=2.7e-11 Score=113.53 Aligned_cols=80 Identities=19% Similarity=0.245 Sum_probs=63.1
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC-CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC-ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGL 534 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~-~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f 534 (550)
|+++..+|..+..|+.++.... .++|++|||||+||... +..+++ +.. ....+.|++|||++|+||+++|
T Consensus 76 D~t~~~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~~~------~~~~~~~~e~SAk~~~~v~~~F 146 (200)
T smart00176 76 DVTARVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSI-TFH------RKKNLQYYDISAKSNYNFEKPF 146 (200)
T ss_pred ECCChHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHH-HHH------HHcCCEEEEEeCCCCCCHHHHH
Confidence 8899999999999999886542 57999999999999543 333322 211 2456899999999999999999
Q ss_pred HHHHHHHHHh
Q psy15732 535 DWLSRQLIAA 544 (550)
Q Consensus 535 ~~l~~~~~~~ 544 (550)
+||+..+.+.
T Consensus 147 ~~l~~~i~~~ 156 (200)
T smart00176 147 LWLARKLIGD 156 (200)
T ss_pred HHHHHHHHhc
Confidence 9999988654
No 37
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.23 E-value=7e-11 Score=106.66 Aligned_cols=83 Identities=47% Similarity=0.773 Sum_probs=68.1
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|++++.++..+..++..++++....++|++|++||+|+.+.....++.+.+++.... ...+.++++||++|.||+++|+
T Consensus 75 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 75 DSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELK-DRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccC-CCcEEEEEeeccCCCCHHHHHH
Confidence 677778888888888877766555679999999999998776677887777655443 5568899999999999999999
Q ss_pred HHHH
Q psy15732 536 WLSR 539 (550)
Q Consensus 536 ~l~~ 539 (550)
||++
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9975
No 38
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.23 E-value=4.3e-11 Score=109.74 Aligned_cols=83 Identities=17% Similarity=0.127 Sum_probs=64.3
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|++|+++|+.+..|+..+.......++|++|||||+|+.+. ++.++..+... ..++.|++|||++|.||+++
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~------~~~~~~~e~Sa~~~~~v~~~ 155 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAR------EFNCPFFETSAALRHYIDDA 155 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHH------HhCCEEEEEecCCCCCHHHH
Confidence 78889999999887766543333357999999999999543 45555544333 45679999999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|+||+..+.++
T Consensus 156 f~~l~~~~~~~ 166 (172)
T cd04141 156 FHGLVREIRRK 166 (172)
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 39
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.22 E-value=6.4e-11 Score=111.56 Aligned_cols=84 Identities=19% Similarity=0.185 Sum_probs=67.0
Q ss_pred CccchhhHHHHHHHHHHHhhc---cCcCCCeEEEEecCCCCC--CCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCH
Q psy15732 456 DSADKERLPEALAELTKLIAE---KELKDAALLLLANKQDIP--GCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGL 530 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~---~~~~~~pili~~NK~Dl~--~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi 530 (550)
|++++++|+++..|+..+... ....++|++|||||+||. ...+.+++.+.+... .-+.+++|||++|.||
T Consensus 82 D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~e~Sak~~~~v 156 (201)
T cd04107 82 DVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKEN-----GFIGWFETSAKEGINI 156 (201)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHc-----CCceEEEEeCCCCCCH
Confidence 889999999999888776432 123678999999999996 566777777766622 1258999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy15732 531 HEGLDWLSRQLIAA 544 (550)
Q Consensus 531 ~e~f~~l~~~~~~~ 544 (550)
+++|+||++.+.+.
T Consensus 157 ~e~f~~l~~~l~~~ 170 (201)
T cd04107 157 EEAMRFLVKNILAN 170 (201)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988553
No 40
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.21 E-value=6.4e-11 Score=110.54 Aligned_cols=85 Identities=14% Similarity=0.186 Sum_probs=60.1
Q ss_pred CccchhhHHHHH-HHHHHHhhccCcCCCeEEEEecCCCCCCCCC-HHHHHHhcCCCc--------ccCC-CcEEEEEecc
Q psy15732 456 DSADKERLPEAL-AELTKLIAEKELKDAALLLLANKQDIPGCET-VESITEAFDLYK--------LCCG-RSWHIQACNA 524 (550)
Q Consensus 456 D~~d~~~~~~~~-~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~-~~~i~~~~~l~~--------~~~~-~~~~~~~~SA 524 (550)
|++|+++|+++. .|+..+... ..++|++|||||.||.+... .+++.+ +++.. ++.. ..+.|++|||
T Consensus 83 dit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~-~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 83 SIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKE-QGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhh-ccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 899999999997 577766543 35799999999999965422 111111 11111 1112 2368999999
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q psy15732 525 QSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 525 ~~g~gi~e~f~~l~~~~~~ 543 (550)
++|+||+++|+||++.+..
T Consensus 160 k~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999998754
No 41
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.20 E-value=7.2e-11 Score=108.40 Aligned_cols=78 Identities=10% Similarity=0.081 Sum_probs=61.6
Q ss_pred CccchhhHHHH-HHHHHHHhhccCcCCCeEEEEecCCCCCCC------------CCHHHHHHhcCCCcccCCCcE-EEEE
Q psy15732 456 DSADKERLPEA-LAELTKLIAEKELKDAALLLLANKQDIPGC------------ETVESITEAFDLYKLCCGRSW-HIQA 521 (550)
Q Consensus 456 D~~d~~~~~~~-~~~l~~~~~~~~~~~~pili~~NK~Dl~~~------------~~~~~i~~~~~l~~~~~~~~~-~~~~ 521 (550)
|.+|+++|+.+ ..|+.++.... .++|++|||||+||.+. ++.++..+... .... .|++
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~------~~~~~~~~E 152 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRK------QIGAAAYIE 152 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHH------HcCCCEEEE
Confidence 89999999998 68998885443 57999999999999542 44555554443 2333 6999
Q ss_pred ecccCCCCHHHHHHHHHHHH
Q psy15732 522 CNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 522 ~SA~~g~gi~e~f~~l~~~~ 541 (550)
|||++|.||+++|++|++.+
T Consensus 153 ~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 153 CSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred CCCCcccCHHHHHHHHHHHH
Confidence 99999999999999999875
No 42
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.18 E-value=1.3e-10 Score=105.83 Aligned_cols=81 Identities=17% Similarity=0.237 Sum_probs=65.3
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|++|+++|+.+..|+..+.... ..++|++|||||+|+... ++.+++.+.+. ..++.+++|||++|+||+++
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 83 DITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLEAQRDVTYEEAKQFAD------ENGLLFLECSAKTGENVEDA 155 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCcCHHHHHHHHH------HcCCEEEEEECCCCCCHHHH
Confidence 8899999999999998875442 356899999999999654 45566665544 34578999999999999999
Q ss_pred HHHHHHHHHH
Q psy15732 534 LDWLSRQLIA 543 (550)
Q Consensus 534 f~~l~~~~~~ 543 (550)
|+||+..+.+
T Consensus 156 f~~l~~~~~~ 165 (166)
T cd04122 156 FLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 43
>KOG0087|consensus
Probab=99.18 E-value=1.5e-10 Score=104.39 Aligned_cols=93 Identities=10% Similarity=0.163 Sum_probs=78.5
Q ss_pred eEEEEEeeCCCC---------------------CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHH
Q psy15732 444 EMRVVTLGLDSA---------------------DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVE 500 (550)
Q Consensus 444 ~~~~~~~~~d~~---------------------D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~ 500 (550)
.+...+|+.+|+ |+|...+|+...+||.++..+.. .+++|++||||+||.. +++.+
T Consensus 62 ~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~lraV~te 140 (222)
T KOG0087|consen 62 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHLRAVPTE 140 (222)
T ss_pred EEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhccccchh
Confidence 566788888887 99999999999999999988754 7899999999999954 56667
Q ss_pred HHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 501 SITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 501 ~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
+.....+ .....|++|||..++||+++|..+...|-+
T Consensus 141 ~~k~~Ae------~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~ 177 (222)
T KOG0087|consen 141 DGKAFAE------KEGLFFLETSALDATNVEKAFERVLTEIYK 177 (222)
T ss_pred hhHhHHH------hcCceEEEecccccccHHHHHHHHHHHHHH
Confidence 7666665 455689999999999999999999887743
No 44
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=99.18 E-value=2.5e-09 Score=92.67 Aligned_cols=122 Identities=15% Similarity=0.239 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 275 RSYVKNASSNVQHLIEEITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHLRESLLVQEAAATSAVDMFVR 354 (550)
Q Consensus 275 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~ 354 (550)
+..|...+..+..+...+...+..++.....+.. +++.++..|...|+.|+.+|++++..++..|+....
T Consensus 2 k~~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~----------~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~ 71 (127)
T smart00502 2 REALEELLTKLRKKAAELEDALKQLISIIQEVEE----------NAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKE 71 (127)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CchhHhhchhHHHHHHHHH
Q psy15732 355 ERLGCLVQLHDDMGFWLQEVAKLYLKCEQMILQ-DDARVLTSGREIKEAIETI 406 (550)
Q Consensus 355 ~~~~~l~~~~~~l~~~~~~l~~~~~~~e~~l~~-~~~~~L~~~~~~~~~l~~~ 406 (550)
.+...|..+...+...+..+..++.++++++.. ++++||+..+.+..++..+
T Consensus 72 ~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~~~~~e~L~~~~~i~~rl~~l 124 (127)
T smart00502 72 NKLKVLEQQLESLTQKQEKLSHAINFTEEALNSGDPTELLLSKKLIIERLQNL 124 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987 8889999777777766654
No 45
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.17 E-value=1.6e-10 Score=105.86 Aligned_cols=83 Identities=51% Similarity=0.873 Sum_probs=71.8
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|.++..+|..+..|+..++......++|+++++||.|+.+....+++.+.+++..+. .+.|.++++||++|+||+++|+
T Consensus 90 D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~Sa~~~~gi~~~~~ 168 (173)
T cd04155 90 DSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLR-DRTWHIQACSAKTGEGLQEGMN 168 (173)
T ss_pred eCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccC-CCeEEEEEeECCCCCCHHHHHH
Confidence 556678899999999888776555679999999999998777788899999987774 7889999999999999999999
Q ss_pred HHHH
Q psy15732 536 WLSR 539 (550)
Q Consensus 536 ~l~~ 539 (550)
||++
T Consensus 169 ~l~~ 172 (173)
T cd04155 169 WVCK 172 (173)
T ss_pred HHhc
Confidence 9975
No 46
>PTZ00369 Ras-like protein; Provisional
Probab=99.17 E-value=1.4e-10 Score=108.10 Aligned_cols=86 Identities=13% Similarity=0.098 Sum_probs=66.3
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|++|.++|+....|+..+.......++|++|+|||+|++.. +...+...... ...+.+++|||++|.||+++
T Consensus 85 D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~------~~~~~~~e~Sak~~~gi~~~ 158 (189)
T PTZ00369 85 SITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAK------SFGIPFLETSAKQRVNVDEA 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH------HhCCEEEEeeCCCCCCHHHH
Confidence 78889999999999888865544457999999999999643 34444443332 23468999999999999999
Q ss_pred HHHHHHHHHHhcCC
Q psy15732 534 LDWLSRQLIAAGVN 547 (550)
Q Consensus 534 f~~l~~~~~~~~~~ 547 (550)
|+||++.+.+..+.
T Consensus 159 ~~~l~~~l~~~~~~ 172 (189)
T PTZ00369 159 FYELVREIRKYLKE 172 (189)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999988766443
No 47
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.16 E-value=1.6e-10 Score=105.14 Aligned_cols=83 Identities=37% Similarity=0.641 Sum_probs=69.1
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCc--ccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYK--LCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~--~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++.+++..+..|+..++++....++|++|++||+|++.....+++.+.++... + ....+.++++||++|+||+++
T Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 82 DSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEI-GRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred ECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccc-cCCceEEEEeeCCCCcCHHHH
Confidence 6677788999999999988776567899999999999988888888888776321 2 245689999999999999999
Q ss_pred HHHHHH
Q psy15732 534 LDWLSR 539 (550)
Q Consensus 534 f~~l~~ 539 (550)
|+||++
T Consensus 161 ~~~l~~ 166 (167)
T cd04160 161 IEWLVE 166 (167)
T ss_pred HHHHhc
Confidence 999975
No 48
>KOG0088|consensus
Probab=99.16 E-value=7.2e-11 Score=100.62 Aligned_cols=81 Identities=17% Similarity=0.189 Sum_probs=66.4
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCC--CCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIP--GCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~--~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+||+++|+.++.|+.++..-. ...+.++|||||+||+ ++++.++..++.+ .-...+++|||+.+.||.|+
T Consensus 94 DITDrdSFqKVKnWV~Elr~ml-Gnei~l~IVGNKiDLEeeR~Vt~qeAe~YAe------svGA~y~eTSAk~N~Gi~el 166 (218)
T KOG0088|consen 94 DITDRDSFQKVKNWVLELRTML-GNEIELLIVGNKIDLEEERQVTRQEAEAYAE------SVGALYMETSAKDNVGISEL 166 (218)
T ss_pred eccchHHHHHHHHHHHHHHHHh-CCeeEEEEecCcccHHHhhhhhHHHHHHHHH------hhchhheecccccccCHHHH
Confidence 9999999999999998875432 2458999999999994 4577777777666 44567899999999999999
Q ss_pred HHHHHHHHHH
Q psy15732 534 LDWLSRQLIA 543 (550)
Q Consensus 534 f~~l~~~~~~ 543 (550)
|.-|...+..
T Consensus 167 Fe~Lt~~MiE 176 (218)
T KOG0088|consen 167 FESLTAKMIE 176 (218)
T ss_pred HHHHHHHHHH
Confidence 9999887643
No 49
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.16 E-value=1.8e-10 Score=105.03 Aligned_cols=82 Identities=16% Similarity=0.199 Sum_probs=63.4
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|+++.++|+.+..|+..+.... .++|++|||||+|+.......+..+... .+.+.+++|||++|+||+++|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~e~Sa~~~~~v~~~f~ 152 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQITFHR------KKNLQYYEISAKSNYNFEKPFL 152 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHHHHH------HcCCEEEEEeCCCCCChHHHHH
Confidence 7788999999999998886543 3799999999999964432222222222 4567899999999999999999
Q ss_pred HHHHHHHHhc
Q psy15732 536 WLSRQLIAAG 545 (550)
Q Consensus 536 ~l~~~~~~~~ 545 (550)
||++.+.+..
T Consensus 153 ~l~~~~~~~~ 162 (166)
T cd00877 153 WLARKLLGNP 162 (166)
T ss_pred HHHHHHHhcc
Confidence 9999986543
No 50
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.15 E-value=1.6e-10 Score=104.86 Aligned_cols=81 Identities=15% Similarity=0.117 Sum_probs=63.3
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|.++..+|+++..|+..++......++|++|++||+|+.+. .+.++..+... ...+.++++||++|.||+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~v~~~ 154 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR------QWGCAFLETSAKAKINVNEI 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHH------HhCCEEEEeeCCCCCCHHHH
Confidence 77888999999999998876555578999999999999653 33343333222 23468999999999999999
Q ss_pred HHHHHHHHH
Q psy15732 534 LDWLSRQLI 542 (550)
Q Consensus 534 f~~l~~~~~ 542 (550)
|+||++.+.
T Consensus 155 ~~~l~~~l~ 163 (164)
T cd04175 155 FYDLVRQIN 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998764
No 51
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.14 E-value=1.5e-10 Score=110.47 Aligned_cols=80 Identities=14% Similarity=0.169 Sum_probs=63.1
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC-CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC-ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGL 534 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~-~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f 534 (550)
|.++.++|.....|+..+... ..++|++|||||.||... ...+++ +... ...+.|++|||++|.||+++|
T Consensus 94 D~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~-~~~~------~~~~~~~e~SAk~~~~i~~~f 164 (219)
T PLN03071 94 DVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TFHR------KKNLQYYEISAKSNYNFEKPF 164 (219)
T ss_pred eCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhhccCCHHHH-HHHH------hcCCEEEEcCCCCCCCHHHHH
Confidence 788899999999999888644 357999999999999643 333433 2222 345789999999999999999
Q ss_pred HHHHHHHHHh
Q psy15732 535 DWLSRQLIAA 544 (550)
Q Consensus 535 ~~l~~~~~~~ 544 (550)
+||++.+...
T Consensus 165 ~~l~~~~~~~ 174 (219)
T PLN03071 165 LYLARKLAGD 174 (219)
T ss_pred HHHHHHHHcC
Confidence 9999988654
No 52
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.13 E-value=1.7e-10 Score=107.74 Aligned_cols=77 Identities=12% Similarity=0.000 Sum_probs=60.1
Q ss_pred CccchhhHHHHH-HHHHHHhhccCcCCCeEEEEecCCCCCC---------------------CCCHHHHHHhcCCCcccC
Q psy15732 456 DSADKERLPEAL-AELTKLIAEKELKDAALLLLANKQDIPG---------------------CETVESITEAFDLYKLCC 513 (550)
Q Consensus 456 D~~d~~~~~~~~-~~l~~~~~~~~~~~~pili~~NK~Dl~~---------------------~~~~~~i~~~~~l~~~~~ 513 (550)
|.+|+++|+++. .|+..+.... .++|++|||||+||.. .++.++..+...
T Consensus 96 d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~------ 167 (195)
T cd01873 96 SIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAK------ 167 (195)
T ss_pred ECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHH------
Confidence 889999999997 5888775432 5789999999999953 345555555443
Q ss_pred CCcEEEEEecccCCCCHHHHHHHHHHH
Q psy15732 514 GRSWHIQACNAQSGEGLHEGLDWLSRQ 540 (550)
Q Consensus 514 ~~~~~~~~~SA~~g~gi~e~f~~l~~~ 540 (550)
..++.|++|||++|+||+++|+.|++.
T Consensus 168 ~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 168 ELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 345689999999999999999999864
No 53
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.13 E-value=2.7e-10 Score=105.14 Aligned_cols=83 Identities=13% Similarity=0.176 Sum_probs=65.6
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|.++.++|..+..|+..+.......+.|++|||||+|+.. .++.+++.+... ..+..++++||++|.||+++
T Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~e~Sak~~~~v~~l 168 (180)
T cd04127 95 DLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALAD------KYGIPYFETSAATGTNVEKA 168 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHH------HcCCeEEEEeCCCCCCHHHH
Confidence 7888999999999999886554445789999999999954 345555555444 22357899999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|+||++.+.++
T Consensus 169 ~~~l~~~~~~~ 179 (180)
T cd04127 169 VERLLDLVMKR 179 (180)
T ss_pred HHHHHHHHHhh
Confidence 99999887643
No 54
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.12 E-value=4.7e-11 Score=120.30 Aligned_cols=85 Identities=29% Similarity=0.545 Sum_probs=71.4
Q ss_pred ccceeccCccchhhhccCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCCCCCccC
Q psy15732 46 TRYSVLLGTRTTRILILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWG 125 (550)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 125 (550)
+..+-|+++....+..++..+.|+||.++|. + |++++|||+||..|+..++.. ...||.|+..+... .
T Consensus 7 ~D~tDw~~t~~~~l~~Le~~l~C~IC~d~~~---~--PvitpCgH~FCs~CI~~~l~~--~~~CP~Cr~~~~~~-----~ 74 (397)
T TIGR00599 7 TDSSDWLTTPIPSLYPLDTSLRCHICKDFFD---V--PVLTSCSHTFCSLCIRRCLSN--QPKCPLCRAEDQES-----K 74 (397)
T ss_pred CCchhhccCCcccccccccccCCCcCchhhh---C--ccCCCCCCchhHHHHHHHHhC--CCCCCCCCCccccc-----c
Confidence 3345566666666777889999999999999 9 999999999999999999874 34799999998654 4
Q ss_pred ccccHHHHHHHHHHHhc
Q psy15732 126 LKKNFALLELIEKIQTN 142 (550)
Q Consensus 126 l~~n~~l~~~~~~~~~~ 142 (550)
+..|+.|.++++.+...
T Consensus 75 Lr~N~~L~~iVe~~~~~ 91 (397)
T TIGR00599 75 LRSNWLVSEIVESFKNL 91 (397)
T ss_pred CccchHHHHHHHHHHHh
Confidence 88999999999988754
No 55
>KOG0086|consensus
Probab=99.12 E-value=3.7e-10 Score=95.68 Aligned_cols=94 Identities=14% Similarity=0.142 Sum_probs=77.3
Q ss_pred eEEEEEeeCCCC---------------------CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCHH
Q psy15732 444 EMRVVTLGLDSA---------------------DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETVE 500 (550)
Q Consensus 444 ~~~~~~~~~d~~---------------------D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~ 500 (550)
.+++.+|+..|+ |+|++++|++...||.+...- ..+++.|+++|||.||.+. ++..
T Consensus 57 ~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~l-As~nIvviL~GnKkDL~~~R~Vtfl 135 (214)
T KOG0086|consen 57 TVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTL-ASPNIVVILCGNKKDLDPEREVTFL 135 (214)
T ss_pred EEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhh-CCCcEEEEEeCChhhcChhhhhhHH
Confidence 567788988887 999999999999999887433 4578999999999999654 4555
Q ss_pred HHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHHh
Q psy15732 501 SITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 501 ~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~~ 544 (550)
|...+.. .+.+.+.+|||+||+||+|+|-..+..+.++
T Consensus 136 EAs~Faq------Enel~flETSa~TGeNVEEaFl~c~~tIl~k 173 (214)
T KOG0086|consen 136 EASRFAQ------ENELMFLETSALTGENVEEAFLKCARTILNK 173 (214)
T ss_pred HHHhhhc------ccceeeeeecccccccHHHHHHHHHHHHHHH
Confidence 5555444 6677899999999999999999999988765
No 56
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.12 E-value=2.9e-10 Score=105.94 Aligned_cols=88 Identities=14% Similarity=0.154 Sum_probs=61.9
Q ss_pred CccchhhHHHHH-HHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCC--------ccc-CCCcEEEEEeccc
Q psy15732 456 DSADKERLPEAL-AELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLY--------KLC-CGRSWHIQACNAQ 525 (550)
Q Consensus 456 D~~d~~~~~~~~-~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~--------~~~-~~~~~~~~~~SA~ 525 (550)
|++|+++|+.+. .|+..+... ..++|++|||||+||.......++...+... .+. ..+.+.|++|||+
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 157 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAK 157 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCC
Confidence 788899998886 588887643 3579999999999997654322221111100 000 1234789999999
Q ss_pred CCCCHHHHHHHHHHHHHHhc
Q psy15732 526 SGEGLHEGLDWLSRQLIAAG 545 (550)
Q Consensus 526 ~g~gi~e~f~~l~~~~~~~~ 545 (550)
+|.||+++|+||++.+....
T Consensus 158 ~~~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 158 LNRGVNEAFTEAARVALNVR 177 (189)
T ss_pred cCCCHHHHHHHHHHHHhccc
Confidence 99999999999999886543
No 57
>KOG0094|consensus
Probab=99.12 E-value=2.2e-10 Score=101.69 Aligned_cols=110 Identities=15% Similarity=0.194 Sum_probs=82.2
Q ss_pred CCCCccccccceeeeCCcceEEEEEeeCCCC---------------------CccchhhHHHHHHHHHHHhhccCcCCCe
Q psy15732 425 PCIPITFTKDNRVHIGPKMEMRVVTLGLDSA---------------------DSADKERLPEALAELTKLIAEKELKDAA 483 (550)
Q Consensus 425 ~~~~~~~~~~~~~~~g~k~~~~~~~~~~d~~---------------------D~~d~~~~~~~~~~l~~~~~~~~~~~~p 483 (550)
+.|-+.|+.....+.|. .+++.+|+..|+ |.+|..+|+....||.+++......++-
T Consensus 53 ATIGiDFlskt~~l~d~--~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~vi 130 (221)
T KOG0094|consen 53 ATIGIDFLSKTMYLEDR--TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVI 130 (221)
T ss_pred ceeeeEEEEEEEEEcCc--EEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceE
Confidence 34444444433333333 577888988888 9999999999999999998877666789
Q ss_pred EEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 484 LLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 484 ili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
|++||||.||.+. .+.+|-..... .-+..|+++||++|.||.+.|..|+..+.
T Consensus 131 I~LVGnKtDL~dkrqvs~eEg~~kAk------el~a~f~etsak~g~NVk~lFrrIaa~l~ 185 (221)
T KOG0094|consen 131 IFLVGNKTDLSDKRQVSIEEGERKAK------ELNAEFIETSAKAGENVKQLFRRIAAALP 185 (221)
T ss_pred EEEEcccccccchhhhhHHHHHHHHH------HhCcEEEEecccCCCCHHHHHHHHHHhcc
Confidence 9999999999543 44444443222 34458999999999999999999998764
No 58
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.11 E-value=3.5e-10 Score=107.43 Aligned_cols=86 Identities=17% Similarity=0.210 Sum_probs=63.2
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC---------------------CCCHHHHHHhcCCC-----
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG---------------------CETVESITEAFDLY----- 509 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~---------------------~~~~~~i~~~~~l~----- 509 (550)
|.+++++|+++..|+..+... ...++|++|||||+||.. .++.++......-.
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~ 154 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKM 154 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccc
Confidence 788999999999999888654 346799999999999954 23455554443210
Q ss_pred ---cccCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 510 ---KLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 510 ---~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
++..-..+.|++|||++|.||+++|.+|++.+.
T Consensus 155 ~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 155 LDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred ccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 010112367999999999999999999998764
No 59
>KOG0081|consensus
Probab=99.11 E-value=2.3e-10 Score=97.69 Aligned_cols=97 Identities=11% Similarity=0.141 Sum_probs=80.2
Q ss_pred cceEEEEEeeCCCC---------------------CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CC
Q psy15732 442 KMEMRVVTLGLDSA---------------------DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ET 498 (550)
Q Consensus 442 k~~~~~~~~~~d~~---------------------D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~ 498 (550)
...+++.+|+..|+ |.|+..+|-+.++||..+..+..-.+.-|++.|||.||++. ++
T Consensus 64 ~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs 143 (219)
T KOG0081|consen 64 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVS 143 (219)
T ss_pred ceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhh
Confidence 34788899999998 99999999999999999987776667779999999999765 34
Q ss_pred HHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHHh
Q psy15732 499 VESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 499 ~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~~ 544 (550)
.++..+... ...++||+|||-||.||+++.+.|...++++
T Consensus 144 ~~qa~~La~------kyglPYfETSA~tg~Nv~kave~LldlvM~R 183 (219)
T KOG0081|consen 144 EDQAAALAD------KYGLPYFETSACTGTNVEKAVELLLDLVMKR 183 (219)
T ss_pred HHHHHHHHH------HhCCCeeeeccccCcCHHHHHHHHHHHHHHH
Confidence 444444333 4466899999999999999999999988765
No 60
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.11 E-value=3.7e-10 Score=102.36 Aligned_cols=78 Identities=12% Similarity=0.073 Sum_probs=60.6
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|++++++|+++..|+..+... ...++|++|+|||.||... ++.++...... .....|++|||++|.||+++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~------~~~~~~~e~Sa~~~~~v~~~ 153 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKLAK------EYGMDFFETSACTNSNIKES 153 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHHHH------HcCCEEEEEeCCCCCCHHHH
Confidence 788999999999999988644 3357999999999999543 34444444433 22357899999999999999
Q ss_pred HHHHHHH
Q psy15732 534 LDWLSRQ 540 (550)
Q Consensus 534 f~~l~~~ 540 (550)
|+||++.
T Consensus 154 f~~l~~~ 160 (161)
T cd04117 154 FTRLTEL 160 (161)
T ss_pred HHHHHhh
Confidence 9999864
No 61
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.10 E-value=5.5e-10 Score=100.69 Aligned_cols=83 Identities=54% Similarity=0.946 Sum_probs=71.3
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|+++.++|.++..|+..+..+....+.|++|++||+|+......+++.+.+++.... ...+.++++||++|.|++++|+
T Consensus 75 D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 75 DSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKIL-GRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhcc-CCcEEEEEeeCCCCCCHHHHHH
Confidence 778888999999999988776556789999999999998777788888888765332 5678999999999999999999
Q ss_pred HHHH
Q psy15732 536 WLSR 539 (550)
Q Consensus 536 ~l~~ 539 (550)
||..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9975
No 62
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.10 E-value=3.7e-10 Score=102.25 Aligned_cols=80 Identities=15% Similarity=0.139 Sum_probs=61.0
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++.++|+....|++.+.......++|++|++||+|+.+. +..++...... .....++++||++|.||+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALAR------QWGCPFYETSAKSKINVDEV 154 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHH------HcCCeEEEecCCCCCCHHHH
Confidence 77888999999999888876544567999999999999542 33333333222 22368999999999999999
Q ss_pred HHHHHHHH
Q psy15732 534 LDWLSRQL 541 (550)
Q Consensus 534 f~~l~~~~ 541 (550)
|+||++.+
T Consensus 155 ~~~l~~~~ 162 (163)
T cd04136 155 FADLVRQI 162 (163)
T ss_pred HHHHHHhc
Confidence 99998765
No 63
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.09 E-value=5.5e-10 Score=106.73 Aligned_cols=93 Identities=14% Similarity=0.088 Sum_probs=71.3
Q ss_pred eEEEEEeeCCCC---------------------CccchhhHHHH-HHHHHHHhhccCcCCCeEEEEecCCCCCC------
Q psy15732 444 EMRVVTLGLDSA---------------------DSADKERLPEA-LAELTKLIAEKELKDAALLLLANKQDIPG------ 495 (550)
Q Consensus 444 ~~~~~~~~~d~~---------------------D~~d~~~~~~~-~~~l~~~~~~~~~~~~pili~~NK~Dl~~------ 495 (550)
.+.+.+|++.|+ |+++.++|+.+ ..|+..+.... .++|++|||||+||..
T Consensus 60 ~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~ 137 (232)
T cd04174 60 RVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLM 137 (232)
T ss_pred EEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhh
Confidence 456677877776 89999999985 78888886432 4789999999999953
Q ss_pred --------CCCHHHHHHhcCCCcccCCCcE-EEEEecccCCC-CHHHHHHHHHHHHHHh
Q psy15732 496 --------CETVESITEAFDLYKLCCGRSW-HIQACNAQSGE-GLHEGLDWLSRQLIAA 544 (550)
Q Consensus 496 --------~~~~~~i~~~~~l~~~~~~~~~-~~~~~SA~~g~-gi~e~f~~l~~~~~~~ 544 (550)
.++.++..+... ..+. .|++|||++|+ ||+++|..|+..+.++
T Consensus 138 ~l~~~~~~~Vs~~e~~~~a~------~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 138 ELSNQKQAPISYEQGCALAK------QLGAEVYLECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred hhccccCCcCCHHHHHHHHH------HcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence 355555555544 3344 68999999998 8999999999987554
No 64
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.09 E-value=4.1e-10 Score=104.03 Aligned_cols=79 Identities=13% Similarity=0.080 Sum_probs=61.9
Q ss_pred CccchhhHHHH-HHHHHHHhhccCcCCCeEEEEecCCCCCC--------------CCCHHHHHHhcCCCcccCCCc-EEE
Q psy15732 456 DSADKERLPEA-LAELTKLIAEKELKDAALLLLANKQDIPG--------------CETVESITEAFDLYKLCCGRS-WHI 519 (550)
Q Consensus 456 D~~d~~~~~~~-~~~l~~~~~~~~~~~~pili~~NK~Dl~~--------------~~~~~~i~~~~~l~~~~~~~~-~~~ 519 (550)
|.+++++|+++ ..|+..+.... +++|++|||||+||.. .++.++..+... ..+ ..|
T Consensus 85 Dit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~------~~~~~~~ 156 (182)
T cd04172 85 DISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAK------QIGAATY 156 (182)
T ss_pred ECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHH------HcCCCEE
Confidence 88999999997 78888876543 5799999999999953 255555555444 334 389
Q ss_pred EEecccCCCC-HHHHHHHHHHHHH
Q psy15732 520 QACNAQSGEG-LHEGLDWLSRQLI 542 (550)
Q Consensus 520 ~~~SA~~g~g-i~e~f~~l~~~~~ 542 (550)
++|||++|+| |+++|+.+...+.
T Consensus 157 ~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 157 IECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred EECCcCCCCCCHHHHHHHHHHHHh
Confidence 9999999998 9999999988543
No 65
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.08 E-value=6.2e-10 Score=105.52 Aligned_cols=83 Identities=14% Similarity=0.232 Sum_probs=66.0
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|.+|+++|+++..|+..+........+|++|+|||.|+.. .++.++..+... ..++.+++|||++|+||+++
T Consensus 84 D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~------~~~~~~~e~Sak~g~~v~e~ 157 (211)
T cd04111 84 DITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAK------DLGMKYIETSARTGDNVEEA 157 (211)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHH------HhCCEEEEEeCCCCCCHHHH
Confidence 7888999999999999887665445689999999999964 344555544433 33478999999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|+||++.+.+.
T Consensus 158 f~~l~~~~~~~ 168 (211)
T cd04111 158 FELLTQEIYER 168 (211)
T ss_pred HHHHHHHHHHH
Confidence 99999987543
No 66
>KOG0287|consensus
Probab=99.08 E-value=4.8e-11 Score=113.11 Aligned_cols=74 Identities=23% Similarity=0.437 Sum_probs=64.5
Q ss_pred hhhhccCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHH
Q psy15732 57 TRILILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELI 136 (550)
Q Consensus 57 ~~~~~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~ 136 (550)
+.+..+...|.|.||.++|+ - |+++||||+||.-||+.++. ....||.|+.++.-+. |..|+.|.+|+
T Consensus 15 pslk~lD~lLRC~IC~eyf~---i--p~itpCsHtfCSlCIR~~L~--~~p~CP~C~~~~~Es~-----Lr~n~il~Eiv 82 (442)
T KOG0287|consen 15 PSLKTLDDLLRCGICFEYFN---I--PMITPCSHTFCSLCIRKFLS--YKPQCPTCCVTVTESD-----LRNNRILDEIV 82 (442)
T ss_pred chhhhhHHHHHHhHHHHHhc---C--ceeccccchHHHHHHHHHhc--cCCCCCceecccchhh-----hhhhhHHHHHH
Confidence 34455678899999999999 8 99999999999999999998 6677999999998764 89999999999
Q ss_pred HHHHhc
Q psy15732 137 EKIQTN 142 (550)
Q Consensus 137 ~~~~~~ 142 (550)
+.+...
T Consensus 83 ~S~~~~ 88 (442)
T KOG0287|consen 83 KSLNFA 88 (442)
T ss_pred HHHHHH
Confidence 877643
No 67
>KOG0091|consensus
Probab=99.08 E-value=6.3e-10 Score=95.59 Aligned_cols=97 Identities=14% Similarity=0.244 Sum_probs=79.1
Q ss_pred CcceEEEEEeeCCCC---------------------CccchhhHHHHHHHHHHHhhccC-cCCCeEEEEecCCCCC--CC
Q psy15732 441 PKMEMRVVTLGLDSA---------------------DSADKERLPEALAELTKLIAEKE-LKDAALLLLANKQDIP--GC 496 (550)
Q Consensus 441 ~k~~~~~~~~~~d~~---------------------D~~d~~~~~~~~~~l~~~~~~~~-~~~~pili~~NK~Dl~--~~ 496 (550)
|-..+++..|+..|+ |+|+.++|+.+..|+.+..-+.. ...+.+++||-|+||. ++
T Consensus 54 pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq 133 (213)
T KOG0091|consen 54 PGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ 133 (213)
T ss_pred CCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhcc
Confidence 334677888988888 99999999999999987655544 4567799999999995 45
Q ss_pred CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 497 ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 497 ~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
++.+|.+.... +.++.|++|||++|.||+|+|+.|++.+..
T Consensus 134 Vt~EEaEklAa------~hgM~FVETSak~g~NVeEAF~mlaqeIf~ 174 (213)
T KOG0091|consen 134 VTAEEAEKLAA------SHGMAFVETSAKNGCNVEEAFDMLAQEIFQ 174 (213)
T ss_pred ccHHHHHHHHH------hcCceEEEecccCCCcHHHHHHHHHHHHHH
Confidence 67777766555 566799999999999999999999998743
No 68
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.07 E-value=7.7e-10 Score=100.63 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=62.4
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++.++|+++..|+..+... ...++|++|+|||+||... ...++..+... ..++.++++||++|.||+++
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gv~~l 154 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDMEDERVVSSERGRQLAD------QLGFEFFEASAKENINVKQV 154 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccCcccccCHHHHHHHHH------HcCCEEEEEECCCCCCHHHH
Confidence 788899999999999887543 2357899999999999543 34444444333 23457999999999999999
Q ss_pred HHHHHHHHHH
Q psy15732 534 LDWLSRQLIA 543 (550)
Q Consensus 534 f~~l~~~~~~ 543 (550)
|+||++.+..
T Consensus 155 ~~~l~~~~~~ 164 (165)
T cd01865 155 FERLVDIICD 164 (165)
T ss_pred HHHHHHHHHh
Confidence 9999987653
No 69
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.05 E-value=7.8e-10 Score=99.84 Aligned_cols=80 Identities=14% Similarity=0.189 Sum_probs=61.9
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC-CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC-ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGL 534 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~-~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f 534 (550)
|.+|..+|++...|+..+.......++|++|++||+|+... ....++.+... ...+.++++||++|.||+++|
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l~ 154 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAK------SYGIPYIETSAKTRQGVEEAF 154 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHH------HhCCeEEEecCCCCCCHHHHH
Confidence 66778889888888888876544567999999999999653 34444444433 334579999999999999999
Q ss_pred HHHHHHH
Q psy15732 535 DWLSRQL 541 (550)
Q Consensus 535 ~~l~~~~ 541 (550)
+||++.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04138 155 YTLVREI 161 (162)
T ss_pred HHHHHHh
Confidence 9999765
No 70
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.05 E-value=7.2e-10 Score=100.47 Aligned_cols=80 Identities=13% Similarity=0.149 Sum_probs=60.6
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|++|.++|.+...|+..+.......++|++|++||+|+... +...+...... ...+.+++|||++|.||+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAE------EWGCPFMETSAKSKTMVNEL 154 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHH------HhCCEEEEecCCCCCCHHHH
Confidence 78899999999999888866544467999999999999542 23333322221 22458899999999999999
Q ss_pred HHHHHHHH
Q psy15732 534 LDWLSRQL 541 (550)
Q Consensus 534 f~~l~~~~ 541 (550)
|+||++.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd04176 155 FAEIVRQM 162 (163)
T ss_pred HHHHHHhc
Confidence 99999765
No 71
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.05 E-value=1e-09 Score=106.37 Aligned_cols=81 Identities=14% Similarity=0.108 Sum_probs=66.3
Q ss_pred CccchhhHHHHHHHHHHHhhcc--------CcCCCeEEEEecCCCCC--CCCCHHHHHHhcCCCcccCCCcEEEEEeccc
Q psy15732 456 DSADKERLPEALAELTKLIAEK--------ELKDAALLLLANKQDIP--GCETVESITEAFDLYKLCCGRSWHIQACNAQ 525 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~--------~~~~~pili~~NK~Dl~--~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~ 525 (550)
|+++.++|+++..|+.+++... ...++|++|++||+|+. ..++.+++.+.++. ...+.++++||+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~-----~~~~~~~evSAk 154 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG-----DENCAYFEVSAK 154 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh-----cCCCEEEEEeCC
Confidence 7778899999999988886541 23579999999999996 45677888877762 345789999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy15732 526 SGEGLHEGLDWLSRQL 541 (550)
Q Consensus 526 ~g~gi~e~f~~l~~~~ 541 (550)
+|.||+++|+||+..+
T Consensus 155 tg~gI~elf~~L~~~~ 170 (247)
T cd04143 155 KNSNLDEMFRALFSLA 170 (247)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999999865
No 72
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.05 E-value=9.1e-10 Score=102.70 Aligned_cols=83 Identities=12% Similarity=0.074 Sum_probs=61.7
Q ss_pred CccchhhHHHHHHHHHHHhhccC--cCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKE--LKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLH 531 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~--~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~ 531 (550)
|.++.++|+.+..|+..+..... ..++|++|||||+|+.. .++..+..+... ..++.++++||++|.||+
T Consensus 79 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~------~~~~~~~e~SAk~~~~v~ 152 (190)
T cd04144 79 SITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALAR------RLGCEFIEASAKTNVNVE 152 (190)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHH------HhCCEEEEecCCCCCCHH
Confidence 67788888888888877754322 35789999999999953 344444433322 334689999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy15732 532 EGLDWLSRQLIAA 544 (550)
Q Consensus 532 e~f~~l~~~~~~~ 544 (550)
++|+||++.+.+.
T Consensus 153 ~l~~~l~~~l~~~ 165 (190)
T cd04144 153 RAFYTLVRALRQQ 165 (190)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987543
No 73
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.05 E-value=9.7e-10 Score=103.31 Aligned_cols=81 Identities=16% Similarity=0.170 Sum_probs=64.0
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|++++++|+.+..|+..+.... .++|++|||||+|+... ++.++...... ..++.|+++||++|.||+++
T Consensus 87 D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~~------~~~~~~~e~Sa~~~~gi~~l 158 (199)
T cd04110 87 DVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFAG------QMGISLFETSAKENINVEEM 158 (199)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHHH------HcCCEEEEEECCCCcCHHHH
Confidence 7788899999999999886543 57899999999999654 34455554443 23468999999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|+||+..+...
T Consensus 159 f~~l~~~~~~~ 169 (199)
T cd04110 159 FNCITELVLRA 169 (199)
T ss_pred HHHHHHHHHHh
Confidence 99999988653
No 74
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.05 E-value=7.4e-10 Score=100.38 Aligned_cols=80 Identities=16% Similarity=0.148 Sum_probs=62.4
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++..+|+....|+..+.......++|++|++||+|+... .+.++..+.+. ..++.++++||++|.||+++
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~l 155 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELAR------KLKIPYIETSAKDRLNVDKA 155 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHH------HcCCcEEEeeCCCCCCHHHH
Confidence 77888999999999888876544467999999999999654 23444444333 23457899999999999999
Q ss_pred HHHHHHHH
Q psy15732 534 LDWLSRQL 541 (550)
Q Consensus 534 f~~l~~~~ 541 (550)
|+||+..+
T Consensus 156 ~~~l~~~~ 163 (164)
T cd04145 156 FHDLVRVI 163 (164)
T ss_pred HHHHHHhh
Confidence 99999865
No 75
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.05 E-value=9.9e-10 Score=104.56 Aligned_cols=83 Identities=11% Similarity=0.123 Sum_probs=63.3
Q ss_pred CccchhhHHHHHHHHHHHhhccC--cCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKE--LKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLH 531 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~--~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~ 531 (550)
|++++++|+.+..|+..+..... ..++|++||+||.||.. .++.++..+... ..++.++++||++|+||+
T Consensus 82 D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~------~~~~~~~~iSAktg~gv~ 155 (215)
T cd04109 82 DVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQ------ANGMESCLVSAKTGDRVN 155 (215)
T ss_pred ECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHH------HcCCEEEEEECCCCCCHH
Confidence 88999999999888887765422 24578999999999953 344455444433 234578999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy15732 532 EGLDWLSRQLIAA 544 (550)
Q Consensus 532 e~f~~l~~~~~~~ 544 (550)
++|+||+..+...
T Consensus 156 ~lf~~l~~~l~~~ 168 (215)
T cd04109 156 LLFQQLAAELLGV 168 (215)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988653
No 76
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.04 E-value=1.1e-09 Score=99.41 Aligned_cols=82 Identities=17% Similarity=0.178 Sum_probs=63.0
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++.++|++...|...+.......++|++|+|||+|+... .+.+++....+ .....++++||++|.||+++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~l 153 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELAR------QWGCPFLETSAKERVNVDEA 153 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHH------HcCCEEEEeecCCCCCHHHH
Confidence 67788889888888877765544457999999999999643 34444444443 23368999999999999999
Q ss_pred HHHHHHHHHH
Q psy15732 534 LDWLSRQLIA 543 (550)
Q Consensus 534 f~~l~~~~~~ 543 (550)
|+||++.+.+
T Consensus 154 ~~~l~~~~~~ 163 (164)
T smart00173 154 FYDLVREIRK 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 77
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.04 E-value=9.2e-10 Score=101.42 Aligned_cols=78 Identities=14% Similarity=0.049 Sum_probs=60.3
Q ss_pred CccchhhHHHH-HHHHHHHhhccCcCCCeEEEEecCCCCCC--------------CCCHHHHHHhcCCCcccCCCcE-EE
Q psy15732 456 DSADKERLPEA-LAELTKLIAEKELKDAALLLLANKQDIPG--------------CETVESITEAFDLYKLCCGRSW-HI 519 (550)
Q Consensus 456 D~~d~~~~~~~-~~~l~~~~~~~~~~~~pili~~NK~Dl~~--------------~~~~~~i~~~~~l~~~~~~~~~-~~ 519 (550)
|.+++++|+++ ..|+..+.... +++|++|||||.||.+ .++.++..+... ..+. .|
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~------~~~~~~~ 152 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAK------QLGAEIY 152 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHH------HhCCCEE
Confidence 89999999996 68888876543 5799999999999953 245555554443 2333 78
Q ss_pred EEecccCCCC-HHHHHHHHHHHH
Q psy15732 520 QACNAQSGEG-LHEGLDWLSRQL 541 (550)
Q Consensus 520 ~~~SA~~g~g-i~e~f~~l~~~~ 541 (550)
++|||++|+| |+++|+.++...
T Consensus 153 ~E~SA~~~~~~v~~~F~~~~~~~ 175 (178)
T cd04131 153 LECSAFTSEKSVRDIFHVATMAC 175 (178)
T ss_pred EECccCcCCcCHHHHHHHHHHHH
Confidence 9999999995 999999998854
No 78
>KOG0394|consensus
Probab=99.03 E-value=1e-09 Score=96.50 Aligned_cols=84 Identities=12% Similarity=0.167 Sum_probs=67.7
Q ss_pred CccchhhHHHHHHHHHHHhhccC---cCCCeEEEEecCCCCCC----CCCHHHHHHhcCCCcccCCCcEEEEEecccCCC
Q psy15732 456 DSADKERLPEALAELTKLIAEKE---LKDAALLLLANKQDIPG----CETVESITEAFDLYKLCCGRSWHIQACNAQSGE 528 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~---~~~~pili~~NK~Dl~~----~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~ 528 (550)
|..++++|+....|-.+++.... ...-|++|+|||+|+++ .++.....++.. ..+.+.||+||||.+.
T Consensus 90 dv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~-----s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 90 DVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCK-----SKGNIPYFETSAKEAT 164 (210)
T ss_pred ecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHH-----hcCCceeEEecccccc
Confidence 77788888877777777775433 24579999999999965 457777777777 4778999999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q psy15732 529 GLHEGLDWLSRQLIAA 544 (550)
Q Consensus 529 gi~e~f~~l~~~~~~~ 544 (550)
||++||..++..+..+
T Consensus 165 NV~~AFe~ia~~aL~~ 180 (210)
T KOG0394|consen 165 NVDEAFEEIARRALAN 180 (210)
T ss_pred cHHHHHHHHHHHHHhc
Confidence 9999999999987654
No 79
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.03 E-value=1.4e-09 Score=99.22 Aligned_cols=81 Identities=15% Similarity=0.143 Sum_probs=64.7
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|++|.++|+++..|+..+.... ..++|++|+|||.|+... ...++..+.+. ...+.++++||++|.||+++
T Consensus 84 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~v~~~ 156 (167)
T cd01867 84 DITDEKSFENIRNWMRNIEEHA-SEDVERMLVGNKCDMEEKRVVSKEEGEALAD------EYGIKFLETSAKANINVEEA 156 (167)
T ss_pred ECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHH------HcCCEEEEEeCCCCCCHHHH
Confidence 7788999999999998886542 367999999999999643 45555555444 33457899999999999999
Q ss_pred HHHHHHHHHH
Q psy15732 534 LDWLSRQLIA 543 (550)
Q Consensus 534 f~~l~~~~~~ 543 (550)
|+||++.+.+
T Consensus 157 ~~~i~~~~~~ 166 (167)
T cd01867 157 FFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHh
Confidence 9999998864
No 80
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.03 E-value=1.2e-09 Score=99.36 Aligned_cols=81 Identities=17% Similarity=0.250 Sum_probs=64.0
Q ss_pred CccchhhHHHHHHHHHHHhhccC----cCCCeEEEEecCCCCC--CCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCC
Q psy15732 456 DSADKERLPEALAELTKLIAEKE----LKDAALLLLANKQDIP--GCETVESITEAFDLYKLCCGRSWHIQACNAQSGEG 529 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~----~~~~pili~~NK~Dl~--~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~g 529 (550)
|.+++++|+....|+..+..... ..++|+++++||.|+. ...+.++...... ..++.++++||++|.|
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~g 154 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAE------SKGFKYFETSACTGEG 154 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHH------HcCCeEEEEECCCCCC
Confidence 78888999999999988865432 2568999999999996 3445566555443 3346799999999999
Q ss_pred HHHHHHHHHHHHH
Q psy15732 530 LHEGLDWLSRQLI 542 (550)
Q Consensus 530 i~e~f~~l~~~~~ 542 (550)
|+++|+||.+.+.
T Consensus 155 i~~l~~~l~~~l~ 167 (168)
T cd04119 155 VNEMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998774
No 81
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.03 E-value=1.6e-09 Score=101.19 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=64.0
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCC--CCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIP--GCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~--~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++.++|+++..|+..+.... ..++|++|++||.|+. ..+..++...... ...+.|+++||++|.||+++
T Consensus 82 D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~------~~~~~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 82 DITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGERLAK------EYGVPFMETSAKTGLNVELA 154 (191)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHHHHHH------HcCCeEEEEeCCCCCCHHHH
Confidence 7788899999999998886542 3578999999999995 3344455444333 23458999999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|+||++.+...
T Consensus 155 ~~~l~~~~~~~ 165 (191)
T cd04112 155 FTAVAKELKHR 165 (191)
T ss_pred HHHHHHHHHHh
Confidence 99999988765
No 82
>KOG0079|consensus
Probab=99.02 E-value=7.4e-10 Score=93.48 Aligned_cols=93 Identities=13% Similarity=0.143 Sum_probs=77.4
Q ss_pred ceEEEEEeeCCCC---------------------CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCH
Q psy15732 443 MEMRVVTLGLDSA---------------------DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETV 499 (550)
Q Consensus 443 ~~~~~~~~~~d~~---------------------D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~ 499 (550)
+.+.+.+|+..|+ |.|+.++|.+++.||+++.++- ..+|-++||||.|+++. +..
T Consensus 55 ~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t 132 (198)
T KOG0079|consen 55 DRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRVVDT 132 (198)
T ss_pred cEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccceeeeh
Confidence 3667788888887 9999999999999999997664 47899999999999764 455
Q ss_pred HHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 500 ESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 500 ~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
++.+.+.. ..++.+|+||||..+|++..|..|++++..
T Consensus 133 ~dAr~~A~------~mgie~FETSaKe~~NvE~mF~cit~qvl~ 170 (198)
T KOG0079|consen 133 EDARAFAL------QMGIELFETSAKENENVEAMFHCITKQVLQ 170 (198)
T ss_pred HHHHHHHH------hcCchheehhhhhcccchHHHHHHHHHHHH
Confidence 66666555 566789999999999999999999998744
No 83
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.02 E-value=2.4e-09 Score=96.05 Aligned_cols=83 Identities=30% Similarity=0.516 Sum_probs=69.1
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|+++.+++..+..|+..++......++|++|++||+|+.+.....++...+++.... .+.+.++++||++|.||+++|+
T Consensus 76 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 76 DAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSIT-DREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCccccc-CCceEEEEEEeccCCChHHHHH
Confidence 677788899999999998776555789999999999998776667777777665543 5678999999999999999999
Q ss_pred HHHH
Q psy15732 536 WLSR 539 (550)
Q Consensus 536 ~l~~ 539 (550)
||++
T Consensus 155 ~l~~ 158 (159)
T cd04159 155 WLIK 158 (159)
T ss_pred HHhh
Confidence 9975
No 84
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.02 E-value=1.1e-09 Score=100.65 Aligned_cols=78 Identities=13% Similarity=0.078 Sum_probs=56.2
Q ss_pred CccchhhHHHHH-HHHHHHhhccCcCCCeEEEEecCCCCCCC--------------CCHHHHHHhcCCCcccCCCcEEEE
Q psy15732 456 DSADKERLPEAL-AELTKLIAEKELKDAALLLLANKQDIPGC--------------ETVESITEAFDLYKLCCGRSWHIQ 520 (550)
Q Consensus 456 D~~d~~~~~~~~-~~l~~~~~~~~~~~~pili~~NK~Dl~~~--------------~~~~~i~~~~~l~~~~~~~~~~~~ 520 (550)
|++|+++|++.. .|+..+... ..++|++|||||+||... ++.++..+... .-+...|+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~ 153 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK-----EIGAVKYL 153 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHH-----HcCCcEEE
Confidence 888999999986 577766543 257999999999999542 12222222221 01224889
Q ss_pred EecccCCCCHHHHHHHHHHH
Q psy15732 521 ACNAQSGEGLHEGLDWLSRQ 540 (550)
Q Consensus 521 ~~SA~~g~gi~e~f~~l~~~ 540 (550)
+|||++|+||+++|++|++.
T Consensus 154 e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 154 ECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred EecccccCCHHHHHHHHHHh
Confidence 99999999999999999864
No 85
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.02 E-value=1.3e-09 Score=100.24 Aligned_cols=78 Identities=13% Similarity=0.106 Sum_probs=56.6
Q ss_pred CccchhhHHHHHH-HHHHHhhccCcCCCeEEEEecCCCCCCC--------------CCHHHHHHhcCCCcccCCCcEEEE
Q psy15732 456 DSADKERLPEALA-ELTKLIAEKELKDAALLLLANKQDIPGC--------------ETVESITEAFDLYKLCCGRSWHIQ 520 (550)
Q Consensus 456 D~~d~~~~~~~~~-~l~~~~~~~~~~~~pili~~NK~Dl~~~--------------~~~~~i~~~~~l~~~~~~~~~~~~ 520 (550)
|.+++++|+++.. |+..+... ..++|++|+|||+|+.+. ++.++..+... ..+.+.|+
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~-----~~~~~~~~ 153 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLAR-----DLKAVKYV 153 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHH-----HhCCcEEE
Confidence 8899999999874 77776543 257999999999999543 11222222111 12247899
Q ss_pred EecccCCCCHHHHHHHHHHH
Q psy15732 521 ACNAQSGEGLHEGLDWLSRQ 540 (550)
Q Consensus 521 ~~SA~~g~gi~e~f~~l~~~ 540 (550)
+|||++|.||+++|+.++..
T Consensus 154 e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 154 ECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred EecCCCCCCHHHHHHHHHHH
Confidence 99999999999999999874
No 86
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.01 E-value=1.3e-09 Score=100.73 Aligned_cols=80 Identities=9% Similarity=0.013 Sum_probs=59.0
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCC-------HHHHHHhcCCCcccCCCcEEEEEecccCCC
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCET-------VESITEAFDLYKLCCGRSWHIQACNAQSGE 528 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~-------~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~ 528 (550)
|.+|+++|+++..|+..+.... ..++|| +||||+||....+ .++..+.. ...++.+++|||++|.
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~-~~~~pi-lVgnK~Dl~~~~~~~~~~~~~~~~~~~a------~~~~~~~~e~SAk~g~ 152 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFN-KTAIPI-LVGTKYDLFADLPPEEQEEITKQARKYA------KAMKAPLIFCSTSHSI 152 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCEE-EEEEchhccccccchhhhhhHHHHHHHH------HHcCCEEEEEeCCCCC
Confidence 8899999999999999886643 245775 6799999954322 11111211 1334689999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy15732 529 GLHEGLDWLSRQLIA 543 (550)
Q Consensus 529 gi~e~f~~l~~~~~~ 543 (550)
||+++|+||++.+..
T Consensus 153 ~v~~lf~~l~~~l~~ 167 (182)
T cd04128 153 NVQKIFKIVLAKAFD 167 (182)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998754
No 87
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.01 E-value=3.2e-10 Score=85.17 Aligned_cols=62 Identities=24% Similarity=0.340 Sum_probs=54.1
Q ss_pred cceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHHHH
Q psy15732 65 ALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELIEK 138 (550)
Q Consensus 65 ~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~~ 138 (550)
++.||||++.+. + |++++|||+||+.|+..++.. ...||.|+..+... .+.+|..+.+.++.
T Consensus 1 ~~~Cpi~~~~~~---~--Pv~~~~G~v~~~~~i~~~~~~--~~~cP~~~~~~~~~-----~l~~~~~l~~~i~~ 62 (63)
T smart00504 1 EFLCPISLEVMK---D--PVILPSGQTYERRAIEKWLLS--HGTDPVTGQPLTHE-----DLIPNLALKSAIQE 62 (63)
T ss_pred CcCCcCCCCcCC---C--CEECCCCCEEeHHHHHHHHHH--CCCCCCCcCCCChh-----hceeCHHHHHHHHh
Confidence 478999999999 9 999999999999999999974 56799999988654 48889999887764
No 88
>KOG0077|consensus
Probab=99.01 E-value=2.7e-10 Score=98.30 Aligned_cols=86 Identities=29% Similarity=0.509 Sum_probs=76.7
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCccc-----------CCCcEEEEEecc
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLC-----------CGRSWHIQACNA 524 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~-----------~~~~~~~~~~SA 524 (550)
|+.|.+||.|++.++..++....+.++|+||++||+|.+++.+.++++-.+++.+.. ..|++.+|.||.
T Consensus 96 da~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi 175 (193)
T KOG0077|consen 96 DAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSI 175 (193)
T ss_pred ehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEE
Confidence 889999999999999999999989999999999999999999999988877654322 357899999999
Q ss_pred cCCCCHHHHHHHHHHHH
Q psy15732 525 QSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 525 ~~g~gi~e~f~~l~~~~ 541 (550)
..|.|.-++|.|+...+
T Consensus 176 ~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 176 VRKMGYGEGFKWLSQYI 192 (193)
T ss_pred EccCccceeeeehhhhc
Confidence 99999999999998754
No 89
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.00 E-value=1.5e-09 Score=98.80 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=56.7
Q ss_pred CccchhhHHHHHHHHHHHhhc--cCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHH
Q psy15732 456 DSADKERLPEALAELTKLIAE--KELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLH 531 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~--~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~ 531 (550)
|.++.++|++...|+..+... ....++|++|||||+|+.. .+..++...... ...+.|++|||++|.||+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~e~SA~~g~~v~ 154 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACAT------EWNCAFMETSAKTNHNVQ 154 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHH------HhCCcEEEeecCCCCCHH
Confidence 677888888888777655322 1235799999999999965 233334333222 334678999999999999
Q ss_pred HHHHHHHHH
Q psy15732 532 EGLDWLSRQ 540 (550)
Q Consensus 532 e~f~~l~~~ 540 (550)
++|+||++.
T Consensus 155 ~~f~~l~~~ 163 (165)
T cd04140 155 ELFQELLNL 163 (165)
T ss_pred HHHHHHHhc
Confidence 999999853
No 90
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.00 E-value=2.1e-09 Score=97.74 Aligned_cols=81 Identities=16% Similarity=0.164 Sum_probs=63.7
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|++|.++|.+...|+..+.... ..++|++|+|||.|+... +..++...... ...+.++++||++|.||+++
T Consensus 83 d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 83 DVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFAD------ELGIPFLETSAKNATNVEQA 155 (166)
T ss_pred ECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHHH------HcCCeEEEEECCCCcCHHHH
Confidence 7888999999999998875432 356899999999999543 44455555443 23468999999999999999
Q ss_pred HHHHHHHHHH
Q psy15732 534 LDWLSRQLIA 543 (550)
Q Consensus 534 f~~l~~~~~~ 543 (550)
|+||++.+.+
T Consensus 156 ~~~i~~~~~~ 165 (166)
T cd01869 156 FMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHh
Confidence 9999998854
No 91
>KOG0083|consensus
Probab=98.99 E-value=3.8e-10 Score=93.40 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=74.8
Q ss_pred eEEEEEeeCCCC---------------------CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCC-C-CCCCHH
Q psy15732 444 EMRVVTLGLDSA---------------------DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDI-P-GCETVE 500 (550)
Q Consensus 444 ~~~~~~~~~d~~---------------------D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl-~-~~~~~~ 500 (550)
.+.+.+|+..|+ |+++..+|++...||.++.+.. ...+.+.++|||+|+ + +++..+
T Consensus 46 kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~-k~~v~l~llgnk~d~a~er~v~~d 124 (192)
T KOG0083|consen 46 KVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYA-KEAVALMLLGNKCDLAHERAVKRD 124 (192)
T ss_pred EEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHH-HhhHhHhhhccccccchhhccccc
Confidence 577888988887 9999999999999999886553 356889999999999 2 445444
Q ss_pred HHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHHh
Q psy15732 501 SITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 501 ~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~~ 544 (550)
+-....+ ...++|++|||+||-||+-+|--|++.+.+.
T Consensus 125 dg~kla~------~y~ipfmetsaktg~nvd~af~~ia~~l~k~ 162 (192)
T KOG0083|consen 125 DGEKLAE------AYGIPFMETSAKTGFNVDLAFLAIAEELKKL 162 (192)
T ss_pred hHHHHHH------HHCCCceeccccccccHhHHHHHHHHHHHHh
Confidence 4433333 3455889999999999999999999998764
No 92
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.99 E-value=1.9e-09 Score=98.42 Aligned_cols=80 Identities=14% Similarity=0.154 Sum_probs=62.1
Q ss_pred CccchhhHHHHHHHHHHHhhccC---cCCCeEEEEecCCCCC-CCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKE---LKDAALLLLANKQDIP-GCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLH 531 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~---~~~~pili~~NK~Dl~-~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~ 531 (550)
|.++.++|+....|+..++.... ..++|++|++||.|+. ...+.+++.+.+.. ...+.++++||++|.||.
T Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 86 AVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRE-----NGDYPYFETSAKDATNVA 160 (170)
T ss_pred ECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHH-----CCCCeEEEEECCCCCCHH
Confidence 67788888888888887765432 3568999999999995 34566777766552 223578999999999999
Q ss_pred HHHHHHHHH
Q psy15732 532 EGLDWLSRQ 540 (550)
Q Consensus 532 e~f~~l~~~ 540 (550)
++|+||++.
T Consensus 161 ~~~~~~~~~ 169 (170)
T cd04116 161 AAFEEAVRR 169 (170)
T ss_pred HHHHHHHhh
Confidence 999999875
No 93
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.99 E-value=1.9e-10 Score=82.70 Aligned_cols=62 Identities=31% Similarity=0.551 Sum_probs=35.7
Q ss_pred ccCCcceeccccccccccCCCCcEEe-cCCCcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHH
Q psy15732 61 ILELALECRVCEDIFLTQGDKVPRLL-HCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELI 136 (550)
Q Consensus 61 ~~~~~l~C~iC~~~~~~~~~~~P~~l-~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~ 136 (550)
.+++.+.|++|.++++ . |+.| .|.|.||..|+...+. ..||+|+.+....+ +..|..|.+++
T Consensus 3 ~le~lLrCs~C~~~l~---~--pv~l~~CeH~fCs~Ci~~~~~----~~CPvC~~Paw~qD-----~~~NrqLd~~i 65 (65)
T PF14835_consen 3 RLEELLRCSICFDILK---E--PVCLGGCEHIFCSSCIRDCIG----SECPVCHTPAWIQD-----IQINRQLDSMI 65 (65)
T ss_dssp HHHHTTS-SSS-S--S---S---B---SSS--B-TTTGGGGTT----TB-SSS--B-S-SS---------HHHHHHH
T ss_pred HHHHhcCCcHHHHHhc---C--CceeccCccHHHHHHhHHhcC----CCCCCcCChHHHHH-----HHhhhhhhccC
Confidence 3567899999999999 9 9987 9999999999988765 24999999987764 89999998875
No 94
>PLN03108 Rab family protein; Provisional
Probab=98.98 E-value=2.8e-09 Score=101.06 Aligned_cols=82 Identities=12% Similarity=0.144 Sum_probs=66.0
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++.++|+....|+..+.... ..++|++|++||.||.. .++.++..+.+. ...+.++++||++|.||+++
T Consensus 87 D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~e~Sa~~~~~v~e~ 159 (210)
T PLN03108 87 DITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK------EHGLIFMEASAKTAQNVEEA 159 (210)
T ss_pred ECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHHH------HcCCEEEEEeCCCCCCHHHH
Confidence 7788899999989988875443 35799999999999965 456666666554 34568999999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|+||+..+.++
T Consensus 160 f~~l~~~~~~~ 170 (210)
T PLN03108 160 FIKTAAKIYKK 170 (210)
T ss_pred HHHHHHHHHHH
Confidence 99999988653
No 95
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.96 E-value=3e-09 Score=96.68 Aligned_cols=79 Identities=13% Similarity=0.148 Sum_probs=60.8
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|.+++.+|+++..|+..+.... ..++|++||+||+|+... ....++.+.... .+.+.++++||++|.||+++
T Consensus 84 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~v~~~ 157 (165)
T cd01864 84 DITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAEK-----NGMLAVLETSAKESQNVEEA 157 (165)
T ss_pred ECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHH-----cCCcEEEEEECCCCCCHHHH
Confidence 7888999999999999886543 367999999999999543 344444443331 22357899999999999999
Q ss_pred HHHHHHH
Q psy15732 534 LDWLSRQ 540 (550)
Q Consensus 534 f~~l~~~ 540 (550)
|+||++.
T Consensus 158 ~~~l~~~ 164 (165)
T cd01864 158 FLLMATE 164 (165)
T ss_pred HHHHHHh
Confidence 9999875
No 96
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.96 E-value=3.5e-09 Score=96.81 Aligned_cols=82 Identities=17% Similarity=0.150 Sum_probs=61.1
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCC----HHHHHHhcCCCcccCCCcEEEEEecccCCCCHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCET----VESITEAFDLYKLCCGRSWHIQACNAQSGEGLH 531 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~----~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~ 531 (550)
|.++.++|.....|+..++......++|+++||||.||..... .++...... ..+..+++|||++|.||+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~e~Sa~~g~~v~ 154 (170)
T cd04108 81 DLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAA------EMQAEYWSVSALSGENVR 154 (170)
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHH------HcCCeEEEEECCCCCCHH
Confidence 7888899999999999887654445689999999999954321 222222211 223578999999999999
Q ss_pred HHHHHHHHHHHH
Q psy15732 532 EGLDWLSRQLIA 543 (550)
Q Consensus 532 e~f~~l~~~~~~ 543 (550)
++|++|+..+..
T Consensus 155 ~lf~~l~~~~~~ 166 (170)
T cd04108 155 EFFFRVAALTFE 166 (170)
T ss_pred HHHHHHHHHHHH
Confidence 999999988753
No 97
>KOG0080|consensus
Probab=98.95 E-value=2.2e-09 Score=92.01 Aligned_cols=95 Identities=15% Similarity=0.136 Sum_probs=81.4
Q ss_pred eEEEEEeeCCCC---------------------CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCC--CCCCHH
Q psy15732 444 EMRVVTLGLDSA---------------------DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIP--GCETVE 500 (550)
Q Consensus 444 ~~~~~~~~~d~~---------------------D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~--~~~~~~ 500 (550)
..++.+|+..|+ |+|.+++|.....|+.++-......++..++||||+|.. +.++.+
T Consensus 59 ~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~re 138 (209)
T KOG0080|consen 59 RLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDRE 138 (209)
T ss_pred eEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHH
Confidence 567788988888 999999999999999998666666788899999999986 567777
Q ss_pred HHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHHh
Q psy15732 501 SITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 501 ~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~~ 544 (550)
|-.++.. +...-|++|||+|.+||+..|+.|++.|...
T Consensus 139 EG~kfAr------~h~~LFiE~SAkt~~~V~~~FeelveKIi~t 176 (209)
T KOG0080|consen 139 EGLKFAR------KHRCLFIECSAKTRENVQCCFEELVEKIIET 176 (209)
T ss_pred HHHHHHH------hhCcEEEEcchhhhccHHHHHHHHHHHHhcC
Confidence 7777666 5677899999999999999999999998754
No 98
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.95 E-value=3.9e-09 Score=95.86 Aligned_cols=79 Identities=16% Similarity=0.215 Sum_probs=62.5
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|.++..+|++...|+..+.... ..++|++|++||.|+.. ....+++..... ..++.++++||++|.||+++
T Consensus 84 d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~v~~l 156 (165)
T cd01868 84 DITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAE------KNGLSFIETSALDGTNVEEA 156 (165)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHH------HcCCEEEEEECCCCCCHHHH
Confidence 6778899999999998886553 34689999999999964 345555555544 23467999999999999999
Q ss_pred HHHHHHHH
Q psy15732 534 LDWLSRQL 541 (550)
Q Consensus 534 f~~l~~~~ 541 (550)
|+||++.+
T Consensus 157 ~~~l~~~i 164 (165)
T cd01868 157 FKQLLTEI 164 (165)
T ss_pred HHHHHHHh
Confidence 99998765
No 99
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.95 E-value=4.6e-09 Score=95.79 Aligned_cols=81 Identities=12% Similarity=0.135 Sum_probs=65.3
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|++++++|+.+..|+.++.... .+++|++|+|||.|+.. .++.+++...+. ...+.++++||++|+||+++
T Consensus 85 d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~e~Sa~~~~~i~~~ 157 (168)
T cd01866 85 DITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAK------EHGLIFMETSAKTASNVEEA 157 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHH------HcCCEEEEEeCCCCCCHHHH
Confidence 7888999999999999886543 36799999999999953 345666655544 33568999999999999999
Q ss_pred HHHHHHHHHH
Q psy15732 534 LDWLSRQLIA 543 (550)
Q Consensus 534 f~~l~~~~~~ 543 (550)
|.||++.+..
T Consensus 158 ~~~~~~~~~~ 167 (168)
T cd01866 158 FINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999988743
No 100
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.94 E-value=5.2e-09 Score=97.35 Aligned_cols=82 Identities=15% Similarity=0.141 Sum_probs=62.9
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|.+++++|.....|+..+.... ..++|++|+|||.|+... ++.++...... ...+.++++||++|.||+++
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~evSa~~~~~i~~~ 153 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFCD------SLNIPFFETSAKQSINVEEA 153 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHHH------HcCCeEEEEeCCCCCCHHHH
Confidence 7788899999999998885432 346899999999999643 34444443322 23457999999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|+||++.+.++
T Consensus 154 f~~l~~~~~~~ 164 (188)
T cd04125 154 FILLVKLIIKR 164 (188)
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 101
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.94 E-value=4.6e-09 Score=95.07 Aligned_cols=79 Identities=20% Similarity=0.271 Sum_probs=63.9
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|.++.++|..+..|+..+..... .++|++|++||+|+.. ..+.+++..... ...+.++++||++|.||.++
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 82 DITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYAD------ENGLLFFETSAKTGENVNEL 154 (163)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHH------HcCCEEEEEECCCCCCHHHH
Confidence 77889999999999998876643 6799999999999963 345556555444 22367999999999999999
Q ss_pred HHHHHHHH
Q psy15732 534 LDWLSRQL 541 (550)
Q Consensus 534 f~~l~~~~ 541 (550)
|+||++.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd01860 155 FTEIAKKL 162 (163)
T ss_pred HHHHHHHh
Confidence 99999876
No 102
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.94 E-value=3.8e-09 Score=95.49 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=62.9
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|.++.++|..+..|+..+... ...++|++|++||.|+.. .++.+++...+. ...+.++++||++|.||+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~~ 153 (161)
T cd04113 81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQ------ENGLLFLETSALTGENVEEA 153 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHH------HcCCEEEEEECCCCCCHHHH
Confidence 788899999999999877433 236799999999999954 345566665554 33478999999999999999
Q ss_pred HHHHHHHH
Q psy15732 534 LDWLSRQL 541 (550)
Q Consensus 534 f~~l~~~~ 541 (550)
|+||++.+
T Consensus 154 ~~~~~~~~ 161 (161)
T cd04113 154 FLKCARSI 161 (161)
T ss_pred HHHHHHhC
Confidence 99998753
No 103
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.93 E-value=2.4e-09 Score=100.36 Aligned_cols=86 Identities=10% Similarity=0.078 Sum_probs=65.3
Q ss_pred CccchhhHHHHHHHHHHHhhccC--cCCCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKE--LKDAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLH 531 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~--~~~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~ 531 (550)
|++++++|+.+..|++.++.... ..++|++|+|||+|+... .+.+++.+... ....+.|++|||++|.||+
T Consensus 89 D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sak~g~~v~ 163 (198)
T cd04142 89 DICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR-----KSWKCGYLECSAKYNWHIL 163 (198)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHH-----HhcCCcEEEecCCCCCCHH
Confidence 67889999999999888876532 467999999999999543 34444443322 1234689999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q psy15732 532 EGLDWLSRQLIAAGV 546 (550)
Q Consensus 532 e~f~~l~~~~~~~~~ 546 (550)
++|+.++..+..+++
T Consensus 164 ~lf~~i~~~~~~~~~ 178 (198)
T cd04142 164 LLFKELLISATTRGR 178 (198)
T ss_pred HHHHHHHHHhhccCC
Confidence 999999998876644
No 104
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.93 E-value=4.1e-09 Score=95.32 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=60.3
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|.+++++|+....|+..+... ..++|++|++||.|+.. .++.+++..... ..++.++++||++|.|++++
T Consensus 83 d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~~v~~l 154 (162)
T cd04106 83 STTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALAK------RLQLPLFRTSVKDDFNVTEL 154 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHHH------HcCCeEEEEECCCCCCHHHH
Confidence 778889999999999887543 35799999999999954 345555544443 22457999999999999999
Q ss_pred HHHHHHH
Q psy15732 534 LDWLSRQ 540 (550)
Q Consensus 534 f~~l~~~ 540 (550)
|+||+..
T Consensus 155 ~~~l~~~ 161 (162)
T cd04106 155 FEYLAEK 161 (162)
T ss_pred HHHHHHh
Confidence 9999864
No 105
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.93 E-value=4.7e-09 Score=94.82 Aligned_cols=79 Identities=16% Similarity=0.152 Sum_probs=63.6
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCC-CCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIP-GCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGL 534 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~-~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f 534 (550)
|.++..+|+....|+..+.......++|++|++||+|+. .....+++.+... ...+.++++||++|.||+++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~~~ 154 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFAR------KHNMLFIETSAKTRDGVQQAF 154 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHH------HcCCEEEEEecCCCCCHHHHH
Confidence 678888999988999888766556789999999999996 3345555555444 345689999999999999999
Q ss_pred HHHHHH
Q psy15732 535 DWLSRQ 540 (550)
Q Consensus 535 ~~l~~~ 540 (550)
++|.+.
T Consensus 155 ~~~~~~ 160 (161)
T cd01863 155 EELVEK 160 (161)
T ss_pred HHHHHh
Confidence 999875
No 106
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.93 E-value=5e-09 Score=97.31 Aligned_cols=81 Identities=12% Similarity=0.093 Sum_probs=61.2
Q ss_pred CccchhhHHHHH-HHHHHHhhccCcCCCeEEEEecCCCCCCC------CCHHHHHHhcCCCcccCCCcE-EEEEecccCC
Q psy15732 456 DSADKERLPEAL-AELTKLIAEKELKDAALLLLANKQDIPGC------ETVESITEAFDLYKLCCGRSW-HIQACNAQSG 527 (550)
Q Consensus 456 D~~d~~~~~~~~-~~l~~~~~~~~~~~~pili~~NK~Dl~~~------~~~~~i~~~~~l~~~~~~~~~-~~~~~SA~~g 527 (550)
|++|.++|+++. .|+..+... ..++|++|+|||+||... +..++..+... ..++ .+++|||++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~------~~~~~~~~e~Sa~~~ 152 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAK------KQGAFAYLECSAKTM 152 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHH------HcCCcEEEEccCCCC
Confidence 788899999886 477766433 257899999999999543 34455544433 2223 7899999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q psy15732 528 EGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 528 ~gi~e~f~~l~~~~~~~ 544 (550)
.||+++|++|+..+..+
T Consensus 153 ~~v~~~f~~l~~~~~~~ 169 (187)
T cd04132 153 ENVEEVFDTAIEEALKK 169 (187)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999988654
No 107
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.91 E-value=6.6e-09 Score=93.98 Aligned_cols=82 Identities=16% Similarity=0.165 Sum_probs=62.1
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|.+++.+|.....|+..+.......++|++|++||+|+.. .....+..+... ...+.++++||++|+||+++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l 153 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLAR------QWGVPYVETSAKTRQNVEKA 153 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHH------HhCCeEEEeeCCCCCCHHHH
Confidence 6677888988888888877654446799999999999965 234444333332 22357899999999999999
Q ss_pred HHHHHHHHHH
Q psy15732 534 LDWLSRQLIA 543 (550)
Q Consensus 534 f~~l~~~~~~ 543 (550)
|+||++.+..
T Consensus 154 ~~~l~~~~~~ 163 (164)
T cd04139 154 FYDLVREIRQ 163 (164)
T ss_pred HHHHHHHHHh
Confidence 9999988753
No 108
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.91 E-value=5.1e-09 Score=95.74 Aligned_cols=81 Identities=12% Similarity=0.092 Sum_probs=63.7
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccC---CCCH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQS---GEGL 530 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~---g~gi 530 (550)
|.+++++|+.+..|+..+.......++|++|++||+|+.+. ++.++..+... ...+.|++|||++ +.||
T Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~e~Sa~~~~~~~~i 157 (170)
T cd04115 84 DVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFAD------AHSMPLFETSAKDPSENDHV 157 (170)
T ss_pred ECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHH------HcCCcEEEEeccCCcCCCCH
Confidence 67888999999999988876655567999999999999654 33444443332 3347899999999 9999
Q ss_pred HHHHHHHHHHHH
Q psy15732 531 HEGLDWLSRQLI 542 (550)
Q Consensus 531 ~e~f~~l~~~~~ 542 (550)
+++|.+|+..++
T Consensus 158 ~~~f~~l~~~~~ 169 (170)
T cd04115 158 EAIFMTLAHKLK 169 (170)
T ss_pred HHHHHHHHHHhh
Confidence 999999998774
No 109
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.91 E-value=3.4e-10 Score=76.40 Aligned_cols=41 Identities=39% Similarity=1.044 Sum_probs=24.9
Q ss_pred eccccccccccCCCCcEEecCCCcchhhhHhhcccCC--CccCCC
Q psy15732 68 CRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKD--DTITCP 110 (550)
Q Consensus 68 C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~--~~~~CP 110 (550)
||||.+ |... ++.|++|+|||+||+.|+.+++..+ ..+.||
T Consensus 1 CpIc~e-~~~~-~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTE-ENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TT-SS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCC-CCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 7643 4569999999999999999998743 678888
No 110
>PLN03110 Rab GTPase; Provisional
Probab=98.91 E-value=6.5e-09 Score=98.96 Aligned_cols=81 Identities=10% Similarity=0.115 Sum_probs=63.1
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++.++|+....|+..+.... ..++|++|+|||+||.+. +..++...... ...+.|+++||++|.||+++
T Consensus 93 d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~------~~~~~~~e~SA~~g~~v~~l 165 (216)
T PLN03110 93 DITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALAE------KEGLSFLETSALEATNVEKA 165 (216)
T ss_pred ECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHHH------HcCCEEEEEeCCCCCCHHHH
Confidence 6888999999999998876542 357999999999999543 33344433322 34568999999999999999
Q ss_pred HHHHHHHHHH
Q psy15732 534 LDWLSRQLIA 543 (550)
Q Consensus 534 f~~l~~~~~~ 543 (550)
|+||+..+..
T Consensus 166 f~~l~~~i~~ 175 (216)
T PLN03110 166 FQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHH
Confidence 9999998854
No 111
>KOG0093|consensus
Probab=98.91 E-value=2.9e-09 Score=89.86 Aligned_cols=96 Identities=13% Similarity=0.140 Sum_probs=75.8
Q ss_pred eEEEEEeeCCCC---------------------CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCHH
Q psy15732 444 EMRVVTLGLDSA---------------------DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETVE 500 (550)
Q Consensus 444 ~~~~~~~~~d~~---------------------D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~ 500 (550)
.+.+.+|+..+. |+|+.++|..+..|.-.+. .-.+.++||++++||+|+... ++.+
T Consensus 69 RiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIk-tysw~naqvilvgnKCDmd~eRvis~e 147 (193)
T KOG0093|consen 69 RIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIK-TYSWDNAQVILVGNKCDMDSERVISHE 147 (193)
T ss_pred EEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHhe-eeeccCceEEEEecccCCccceeeeHH
Confidence 467788888877 9999999999999998774 446789999999999999654 4545
Q ss_pred HHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhcC
Q psy15732 501 SITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIAAGV 546 (550)
Q Consensus 501 ~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~~~~ 546 (550)
....... .-++.||++|||.+.||+++|..|+..+-++..
T Consensus 148 ~g~~l~~------~LGfefFEtSaK~NinVk~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 148 RGRQLAD------QLGFEFFETSAKENINVKQVFERLVDIICDKMS 187 (193)
T ss_pred HHHHHHH------HhChHHhhhcccccccHHHHHHHHHHHHHHHhh
Confidence 4443332 223478899999999999999999999876543
No 112
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.90 E-value=3.2e-09 Score=101.38 Aligned_cols=82 Identities=18% Similarity=0.196 Sum_probs=63.8
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|.+|..+|+.+..|+..+.......++|++||+||+|+.+. ++.++..+... ..++.|++|||++|.||+++
T Consensus 81 d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~------~~~~~~~e~SA~~~~gv~~l 154 (221)
T cd04148 81 SVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAV------VFDCKFIETSAGLQHNVDEL 154 (221)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHH------HcCCeEEEecCCCCCCHHHH
Confidence 77888899999999988866544567999999999999543 34444433322 33567999999999999999
Q ss_pred HHHHHHHHHH
Q psy15732 534 LDWLSRQLIA 543 (550)
Q Consensus 534 f~~l~~~~~~ 543 (550)
|+||+..+..
T Consensus 155 ~~~l~~~~~~ 164 (221)
T cd04148 155 LEGIVRQIRL 164 (221)
T ss_pred HHHHHHHHHh
Confidence 9999998853
No 113
>KOG0097|consensus
Probab=98.90 E-value=9.4e-09 Score=85.95 Aligned_cols=104 Identities=14% Similarity=0.197 Sum_probs=80.6
Q ss_pred eeeCCcceEEEEEeeCCCC---------------------CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC
Q psy15732 437 VHIGPKMEMRVVTLGLDSA---------------------DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG 495 (550)
Q Consensus 437 ~~~g~k~~~~~~~~~~d~~---------------------D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~ 495 (550)
..+|+ .+++.+|+..|+ |++.+..++....||.+.. +...++..|++++||.||..
T Consensus 54 evsgq--kiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar-~ltnpnt~i~lignkadle~ 130 (215)
T KOG0097|consen 54 EVSGQ--KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR-NLTNPNTVIFLIGNKADLES 130 (215)
T ss_pred EecCc--EEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhh-ccCCCceEEEEecchhhhhh
Confidence 34444 345677877776 9999999999999998774 33446778999999999965
Q ss_pred C--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHHh---cCCCC
Q psy15732 496 C--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIAA---GVNDM 549 (550)
Q Consensus 496 ~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~~---~~~~~ 549 (550)
. ++-+|..++.+ .....|+++||+||+||+++|-.-++.+-++ +.+||
T Consensus 131 qrdv~yeeak~fae------engl~fle~saktg~nvedafle~akkiyqniqdgsldl 183 (215)
T KOG0097|consen 131 QRDVTYEEAKEFAE------ENGLMFLEASAKTGQNVEDAFLETAKKIYQNIQDGSLDL 183 (215)
T ss_pred cccCcHHHHHHHHh------hcCeEEEEecccccCcHHHHHHHHHHHHHHhhhcCcccc
Confidence 4 56777777666 6677999999999999999999988887543 55554
No 114
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.90 E-value=7.7e-09 Score=94.32 Aligned_cols=82 Identities=17% Similarity=0.119 Sum_probs=61.1
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|.+++++|+....|...+.......++|++|++||.|+... +..++...... ..+...++++||++|.||+++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~~SA~~~~~i~~~ 155 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQ-----QWGNVPFYETSARKRTNVDEV 155 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHH-----HcCCceEEEeeCCCCCCHHHH
Confidence 67788889888888887765444467999999999999543 34444333322 112357999999999999999
Q ss_pred HHHHHHHHH
Q psy15732 534 LDWLSRQLI 542 (550)
Q Consensus 534 f~~l~~~~~ 542 (550)
|+||+.++.
T Consensus 156 f~~i~~~~~ 164 (168)
T cd04177 156 FIDLVRQII 164 (168)
T ss_pred HHHHHHHHh
Confidence 999998763
No 115
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.89 E-value=6.1e-09 Score=95.43 Aligned_cols=80 Identities=14% Similarity=0.100 Sum_probs=58.4
Q ss_pred CccchhhHHHHH-HHHHHHhhccCcCCCeEEEEecCCCCCCC--------------CCHHHHHHhcCCCcccCCCcEEEE
Q psy15732 456 DSADKERLPEAL-AELTKLIAEKELKDAALLLLANKQDIPGC--------------ETVESITEAFDLYKLCCGRSWHIQ 520 (550)
Q Consensus 456 D~~d~~~~~~~~-~~l~~~~~~~~~~~~pili~~NK~Dl~~~--------------~~~~~i~~~~~l~~~~~~~~~~~~ 520 (550)
|.++.++|++.. .|+..+... ..++|++|+|||.|+... ++.++..+.... .....++
T Consensus 78 d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~ 150 (174)
T smart00174 78 SVDSPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKR-----IGAVKYL 150 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHH-----cCCcEEE
Confidence 788899999886 588877543 257999999999999642 222332222221 1123789
Q ss_pred EecccCCCCHHHHHHHHHHHHH
Q psy15732 521 ACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 521 ~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
+|||++|.||+++|++|+..+.
T Consensus 151 e~Sa~~~~~v~~lf~~l~~~~~ 172 (174)
T smart00174 151 ECSALTQEGVREVFEEAIRAAL 172 (174)
T ss_pred EecCCCCCCHHHHHHHHHHHhc
Confidence 9999999999999999998764
No 116
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.89 E-value=8.6e-09 Score=93.28 Aligned_cols=81 Identities=16% Similarity=0.264 Sum_probs=64.8
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|++++.+|+.+..|+..+..... .++|++|++||+|+.. ....+++.+... ...+.++++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~e~Sa~~~~~i~~l 153 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAFAE------EHGLPFFETSAKTNTNVEEA 153 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHHHH------HcCCeEEEEeCCCCCCHHHH
Confidence 77888999999999998876543 5799999999999965 345555555443 23467999999999999999
Q ss_pred HHHHHHHHHH
Q psy15732 534 LDWLSRQLIA 543 (550)
Q Consensus 534 f~~l~~~~~~ 543 (550)
|+||.+.+.+
T Consensus 154 ~~~i~~~~~~ 163 (164)
T smart00175 154 FEELAREILK 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 117
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.89 E-value=7.9e-09 Score=93.88 Aligned_cols=81 Identities=16% Similarity=0.162 Sum_probs=59.5
Q ss_pred CccchhhHHHHHHHHHHHhhccC-cCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCC-CCHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKE-LKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSG-EGLH 531 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~-~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g-~gi~ 531 (550)
|.++.++|+.+..|+..+..... ..++|++|||||+|+.. .++.++...... ..++.|+++||++| .||+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~e~Sa~~~~~~v~ 153 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLAS------ELGCLFFEVSAAEDYDGVH 153 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHH------HcCCEEEEeCCCCCchhHH
Confidence 67778888888888776644322 35799999999999953 345555444433 23357999999999 5999
Q ss_pred HHHHHHHHHHH
Q psy15732 532 EGLDWLSRQLI 542 (550)
Q Consensus 532 e~f~~l~~~~~ 542 (550)
++|++|++.+.
T Consensus 154 ~~f~~l~~~~~ 164 (165)
T cd04146 154 SVFHELCREVR 164 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 118
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.89 E-value=9.8e-09 Score=95.91 Aligned_cols=81 Identities=12% Similarity=0.161 Sum_probs=61.3
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC------CCHHHHHHhcCCCcccCCCcEEEEEecccCCCC
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC------ETVESITEAFDLYKLCCGRSWHIQACNAQSGEG 529 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~------~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~g 529 (550)
|.++.++|++...|+..+.... .++|++||+||.|+... +...++.+... ...+.++++||++|.|
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~g 153 (193)
T cd04118 82 DLTDSSSFERAKFWVKELQNLE--EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFAD------EIKAQHFETSSKTGQN 153 (193)
T ss_pred ECCCHHHHHHHHHHHHHHHhcC--CCCCEEEEEEcccccccccccCccCHHHHHHHHH------HcCCeEEEEeCCCCCC
Confidence 6788899999888998875442 47899999999998532 22334444322 2346789999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy15732 530 LHEGLDWLSRQLIAA 544 (550)
Q Consensus 530 i~e~f~~l~~~~~~~ 544 (550)
|+++|+||++.+.+.
T Consensus 154 v~~l~~~i~~~~~~~ 168 (193)
T cd04118 154 VDELFQKVAEDFVSR 168 (193)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988553
No 119
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.89 E-value=9.2e-09 Score=92.77 Aligned_cols=79 Identities=16% Similarity=0.224 Sum_probs=61.7
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|++|.++|+....|+.++..... .++|++|++||+|+... +..+++.+... ...+.++++||++|.||+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~gi~~~ 153 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAK------SVGAKHFETSAKTGKGIEEL 153 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHH------HcCCEEEEEeCCCCCCHHHH
Confidence 78888999999888888754432 37999999999999653 34555555443 33457899999999999999
Q ss_pred HHHHHHHH
Q psy15732 534 LDWLSRQL 541 (550)
Q Consensus 534 f~~l~~~~ 541 (550)
|+||.+.+
T Consensus 154 ~~~l~~~~ 161 (162)
T cd04123 154 FLSLAKRM 161 (162)
T ss_pred HHHHHHHh
Confidence 99998865
No 120
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.87 E-value=1e-08 Score=94.56 Aligned_cols=83 Identities=13% Similarity=0.178 Sum_probs=65.0
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|.++.++|+.+..|+..+++.....+.|++|++||+|+.. ....+++..... ...+.++++||++|.||.++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gv~~l 154 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAE------SWGAAFLESSARENENVEEA 154 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHH------HcCCeEEEEeCCCCCCHHHH
Confidence 6778899999999998888765556789999999999963 344444443332 22368999999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|.||.+.+.+.
T Consensus 155 ~~~l~~~~~~~ 165 (180)
T cd04137 155 FELLIEEIEKV 165 (180)
T ss_pred HHHHHHHHHHh
Confidence 99999988654
No 121
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.86 E-value=1.5e-08 Score=92.48 Aligned_cols=84 Identities=8% Similarity=0.132 Sum_probs=64.4
Q ss_pred CccchhhHHHHHHHHHHHhhccC---cCCCeEEEEecCCCCC--CCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCH
Q psy15732 456 DSADKERLPEALAELTKLIAEKE---LKDAALLLLANKQDIP--GCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGL 530 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~---~~~~pili~~NK~Dl~--~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi 530 (550)
|+++..+|+++..|...++.... ..++|++|++||+|+. ...+.+++...+.. .....++++||++|.||
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv 155 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQS-----NGNIPYFETSAKEAINV 155 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHH-----cCCceEEEEECCCCCCH
Confidence 56777888888888777654422 3479999999999996 44566776665552 22368999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy15732 531 HEGLDWLSRQLIAA 544 (550)
Q Consensus 531 ~e~f~~l~~~~~~~ 544 (550)
+++|+||.+.+.++
T Consensus 156 ~~l~~~i~~~~~~~ 169 (172)
T cd01862 156 EQAFETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987654
No 122
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.86 E-value=9.1e-09 Score=93.07 Aligned_cols=80 Identities=23% Similarity=0.282 Sum_probs=67.3
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|.+|+++|+.+..|+..+..... .++|++|+|||.|+.. .++.+++.+... ..+..|++|||++|.||.++
T Consensus 80 d~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~------~~~~~~~e~Sa~~~~~v~~~ 152 (162)
T PF00071_consen 80 DVTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAK------ELGVPYFEVSAKNGENVKEI 152 (162)
T ss_dssp ETTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHH------HTTSEEEEEBTTTTTTHHHH
T ss_pred ccccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHH------HhCCEEEEEECCCCCCHHHH
Confidence 88999999999999998865543 5799999999999965 677777776665 22369999999999999999
Q ss_pred HHHHHHHHH
Q psy15732 534 LDWLSRQLI 542 (550)
Q Consensus 534 f~~l~~~~~ 542 (550)
|..|++.+.
T Consensus 153 f~~~i~~i~ 161 (162)
T PF00071_consen 153 FQELIRKIL 161 (162)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998874
No 123
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.86 E-value=1.5e-09 Score=97.44 Aligned_cols=53 Identities=23% Similarity=0.597 Sum_probs=44.7
Q ss_pred cCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccC--------------CCccCCCCCCCcccCC
Q psy15732 62 LELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIK--------------DDTITCPFDRQPTPVG 119 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~--------------~~~~~CP~Cr~~~~~~ 119 (550)
..+.+.|+||++.+. + |++++|||.||+.||..|+.. .....||.||..+...
T Consensus 15 ~~~~~~CpICld~~~---d--PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 15 SGGDFDCNICLDQVR---D--PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred CCCccCCccCCCcCC---C--cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 346799999999999 9 999999999999999998641 2346899999998654
No 124
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.86 E-value=1.2e-08 Score=95.79 Aligned_cols=82 Identities=20% Similarity=0.151 Sum_probs=61.6
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC---CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC---ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHE 532 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~---~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e 532 (550)
|++|.++|+++..|+..++......++|++|++||+|+... +...+..+.... .....++++||++|.||++
T Consensus 79 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gv~~ 153 (198)
T cd04147 79 AVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVEL-----DWNCGFVETSAKDNENVLE 153 (198)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHh-----hcCCcEEEecCCCCCCHHH
Confidence 67788899999888888876655467999999999999542 233333332221 2234789999999999999
Q ss_pred HHHHHHHHHH
Q psy15732 533 GLDWLSRQLI 542 (550)
Q Consensus 533 ~f~~l~~~~~ 542 (550)
+|+||++.+.
T Consensus 154 l~~~l~~~~~ 163 (198)
T cd04147 154 VFKELLRQAN 163 (198)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 125
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.85 E-value=1.9e-08 Score=95.65 Aligned_cols=93 Identities=16% Similarity=0.106 Sum_probs=65.7
Q ss_pred eEEEEEeeCCCC---------------------CccchhhHHHHHH-HHHHHhhccCcCCCeEEEEecCCCCCCC-----
Q psy15732 444 EMRVVTLGLDSA---------------------DSADKERLPEALA-ELTKLIAEKELKDAALLLLANKQDIPGC----- 496 (550)
Q Consensus 444 ~~~~~~~~~d~~---------------------D~~d~~~~~~~~~-~l~~~~~~~~~~~~pili~~NK~Dl~~~----- 496 (550)
.+.+.+|++.|. |++|+++|+++.. |...+. . ...++|++|||||+||...
T Consensus 48 ~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~-~-~~~~~piiLVgnK~DL~~~~~~~~ 125 (222)
T cd04173 48 RIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQ-E-FCPNAKVVLVGCKLDMRTDLATLR 125 (222)
T ss_pred EEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHH-h-hCCCCCEEEEEECcccccchhhhh
Confidence 456677777765 8999999999964 554443 2 2367999999999999542
Q ss_pred ---------CCHHHHHHhcCCCcccCCCc-EEEEEecccCCCC-HHHHHHHHHHHHHHh
Q psy15732 497 ---------ETVESITEAFDLYKLCCGRS-WHIQACNAQSGEG-LHEGLDWLSRQLIAA 544 (550)
Q Consensus 497 ---------~~~~~i~~~~~l~~~~~~~~-~~~~~~SA~~g~g-i~e~f~~l~~~~~~~ 544 (550)
++.++...... ..+ ..|++|||++|+| |+++|..++.....+
T Consensus 126 ~~~~~~~~pIs~e~g~~~ak------~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 126 ELSKQRLIPVTHEQGTVLAK------QVGAVSYVECSSRSSERSVRDVFHVATVASLGR 178 (222)
T ss_pred hhhhccCCccCHHHHHHHHH------HcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhc
Confidence 22333333222 223 4899999999995 999999998876543
No 126
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.84 E-value=1.6e-08 Score=91.72 Aligned_cols=78 Identities=19% Similarity=0.213 Sum_probs=59.0
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|.++.++|++...|+..+.... .++|++||+||+|+... ++..+...... ...+.++++||++|.||+++
T Consensus 84 d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l 155 (164)
T cd04101 84 DVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFAQ------ANQLKFFKTSALRGVGYEEP 155 (164)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHHH------HcCCeEEEEeCCCCCChHHH
Confidence 7888999999999998876543 56899999999999544 23322222211 22357899999999999999
Q ss_pred HHHHHHHH
Q psy15732 534 LDWLSRQL 541 (550)
Q Consensus 534 f~~l~~~~ 541 (550)
|+||++.+
T Consensus 156 ~~~l~~~~ 163 (164)
T cd04101 156 FESLARAF 163 (164)
T ss_pred HHHHHHHh
Confidence 99999864
No 127
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.83 E-value=1.5e-08 Score=91.46 Aligned_cols=78 Identities=14% Similarity=0.182 Sum_probs=60.8
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|.+++++|+.+..|+..+.... ..++|+++++||.|+... ...++...... ...+.++++||++|.||+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~v~~l 153 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDER-GNDVIIVLVGNKTDLSDKRQVSTEEGEKKAK------ELNAMFIETSAKAGHNVKEL 153 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEEChhccccCccCHHHHHHHHH------HhCCEEEEEeCCCCCCHHHH
Confidence 7788999999999999876543 247999999999999432 34444444443 33478999999999999999
Q ss_pred HHHHHHH
Q psy15732 534 LDWLSRQ 540 (550)
Q Consensus 534 f~~l~~~ 540 (550)
|+||.+.
T Consensus 154 ~~~i~~~ 160 (161)
T cd01861 154 FRKIASA 160 (161)
T ss_pred HHHHHHh
Confidence 9999875
No 128
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.83 E-value=1.1e-08 Score=93.17 Aligned_cols=86 Identities=19% Similarity=0.234 Sum_probs=58.9
Q ss_pred EEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccC
Q psy15732 447 VVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQS 526 (550)
Q Consensus 447 ~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~ 526 (550)
.+++.+|..+.... +++....|+..+... ..++|++|++||+|+.+.....++.+..+ ...+.+++|||++
T Consensus 82 ~~l~v~d~~~~~~~-~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~------~~~~~~~~~Sa~~ 152 (168)
T cd01897 82 AVLFLFDPSETCGY-SLEEQLSLFEEIKPL--FKNKPVIVVLNKIDLLTFEDLSEIEEEEE------LEGEEVLKISTLT 152 (168)
T ss_pred cEEEEEeCCccccc-chHHHHHHHHHHHhh--cCcCCeEEEEEccccCchhhHHHHHHhhh------hccCceEEEEecc
Confidence 45556665433221 456666777766432 24789999999999976533333323222 3467899999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy15732 527 GEGLHEGLDWLSRQL 541 (550)
Q Consensus 527 g~gi~e~f~~l~~~~ 541 (550)
|.||+++|+||++.+
T Consensus 153 ~~gi~~l~~~l~~~~ 167 (168)
T cd01897 153 EEGVDEVKNKACELL 167 (168)
T ss_pred cCCHHHHHHHHHHHh
Confidence 999999999999875
No 129
>PLN03118 Rab family protein; Provisional
Probab=98.82 E-value=2.3e-08 Score=94.91 Aligned_cols=83 Identities=14% Similarity=0.146 Sum_probs=59.8
Q ss_pred CccchhhHHHHHH-HHHHHhhccCcCCCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHH
Q psy15732 456 DSADKERLPEALA-ELTKLIAEKELKDAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHE 532 (550)
Q Consensus 456 D~~d~~~~~~~~~-~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e 532 (550)
|.++.++|.+... |...+.......++|++|||||.|+... .+.++...... ...+.|+++||++|.||++
T Consensus 94 D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~------~~~~~~~e~SAk~~~~v~~ 167 (211)
T PLN03118 94 DVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAK------EHGCLFLECSAKTRENVEQ 167 (211)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH------HcCCEEEEEeCCCCCCHHH
Confidence 7788889998876 4443322223456899999999999653 33444444333 3346799999999999999
Q ss_pred HHHHHHHHHHHh
Q psy15732 533 GLDWLSRQLIAA 544 (550)
Q Consensus 533 ~f~~l~~~~~~~ 544 (550)
+|+||+..+...
T Consensus 168 l~~~l~~~~~~~ 179 (211)
T PLN03118 168 CFEELALKIMEV 179 (211)
T ss_pred HHHHHHHHHHhh
Confidence 999999988653
No 130
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.81 E-value=2e-08 Score=90.87 Aligned_cols=79 Identities=11% Similarity=0.052 Sum_probs=58.9
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|.+++.+|.....|+..+... ..++|++|++||+|+.... ..+..+... ...+.++++||++|.||+++|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~------~~~~~~~~~Sa~~~~gv~~l~~ 151 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKKFNFAE------KHNLPLYYVSAADGTNVVKLFQ 151 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHHHHHHH------HcCCeEEEEeCCCCCCHHHHHH
Confidence 778888898888898888543 2568999999999995432 122222111 2356899999999999999999
Q ss_pred HHHHHHHH
Q psy15732 536 WLSRQLIA 543 (550)
Q Consensus 536 ~l~~~~~~ 543 (550)
.|++.+..
T Consensus 152 ~l~~~~~~ 159 (161)
T cd04124 152 DAIKLAVS 159 (161)
T ss_pred HHHHHHHh
Confidence 99987654
No 131
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.81 E-value=4.6e-09 Score=81.00 Aligned_cols=69 Identities=29% Similarity=0.356 Sum_probs=55.5
Q ss_pred CCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHHHHHHhc
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELIEKIQTN 142 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~~~~~~ 142 (550)
.++|.|||+++.+. + |+++++||+|++.||..|+.. ....||.|+..+... .+.+|..|.+.++.+...
T Consensus 2 P~~f~CpIt~~lM~---d--PVi~~~G~tyer~~I~~~l~~-~~~~~P~t~~~l~~~-----~l~pn~~Lk~~I~~~~~~ 70 (73)
T PF04564_consen 2 PDEFLCPITGELMR---D--PVILPSGHTYERSAIERWLEQ-NGGTDPFTRQPLSES-----DLIPNRALKSAIEEWCAE 70 (73)
T ss_dssp SGGGB-TTTSSB-S---S--EEEETTSEEEEHHHHHHHHCT-TSSB-TTT-SB-SGG-----GSEE-HHHHHHHHHHHHH
T ss_pred CcccCCcCcCcHhh---C--ceeCCcCCEEcHHHHHHHHHc-CCCCCCCCCCcCCcc-----cceECHHHHHHHHHHHHH
Confidence 36799999999999 9 999999999999999999885 467899999988765 589999999999988664
No 132
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.80 E-value=2.5e-08 Score=92.71 Aligned_cols=82 Identities=12% Similarity=0.159 Sum_probs=57.4
Q ss_pred CccchhhHHHHH-HHHHHHhhccCcCCCeEEEEecCCCCCCC------------CCHHHHHHhcCCCcccCCCcEEEEEe
Q psy15732 456 DSADKERLPEAL-AELTKLIAEKELKDAALLLLANKQDIPGC------------ETVESITEAFDLYKLCCGRSWHIQAC 522 (550)
Q Consensus 456 D~~d~~~~~~~~-~~l~~~~~~~~~~~~pili~~NK~Dl~~~------------~~~~~i~~~~~l~~~~~~~~~~~~~~ 522 (550)
|.++.++|++.. .|+..+... ..++|++|||||.|+... ++.++....... -....+|+|
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~e~ 153 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKE-----IGAKKYMEC 153 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHH-----hCCcEEEEc
Confidence 556778898886 577777543 246999999999999532 122232222220 122478999
Q ss_pred cccCCCCHHHHHHHHHHHHHHh
Q psy15732 523 NAQSGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 523 SA~~g~gi~e~f~~l~~~~~~~ 544 (550)
||++|.||+++|+||++.+...
T Consensus 154 Sa~~~~~v~~~f~~l~~~~~~~ 175 (187)
T cd04129 154 SALTGEGVDDVFEAATRAALLV 175 (187)
T ss_pred cCCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999877543
No 133
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.80 E-value=2.1e-09 Score=71.89 Aligned_cols=38 Identities=34% Similarity=0.836 Sum_probs=32.2
Q ss_pred eccccccccccCCCCc-EEecCCCcchhhhHhhcccCCCccCCCCC
Q psy15732 68 CRVCEDIFLTQGDKVP-RLLHCGHTVCLACLLRLPIKDDTITCPFD 112 (550)
Q Consensus 68 C~iC~~~~~~~~~~~P-~~l~CgH~fC~~Cl~~~~~~~~~~~CP~C 112 (550)
|+||++.+. + | +.++|||+||..|+.+++.. ...||.|
T Consensus 1 C~iC~~~~~---~--~~~~~~CGH~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR---D--PVVVTPCGHSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-S---S--EEEECTTSEEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCccc---C--cCEECCCCCchhHHHHHHHHHC--cCCCcCC
Confidence 899999999 9 9 56799999999999999885 4789987
No 134
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.79 E-value=1.9e-09 Score=73.23 Aligned_cols=40 Identities=38% Similarity=0.940 Sum_probs=36.4
Q ss_pred eccccccccccCCCCcE-EecCCCcchhhhHhhcccCCCccCCCCC
Q psy15732 68 CRVCEDIFLTQGDKVPR-LLHCGHTVCLACLLRLPIKDDTITCPFD 112 (550)
Q Consensus 68 C~iC~~~~~~~~~~~P~-~l~CgH~fC~~Cl~~~~~~~~~~~CP~C 112 (550)
|+||.+.+. + |. +++|||+||..|+.+++.....+.||.|
T Consensus 1 C~iC~~~~~---~--~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFE---D--PVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCS---S--EEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCcccc---C--CCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999 8 98 7799999999999999985577889988
No 135
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.77 E-value=1.7e-09 Score=74.57 Aligned_cols=43 Identities=28% Similarity=0.604 Sum_probs=35.5
Q ss_pred eeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCC
Q psy15732 67 ECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDR 113 (550)
Q Consensus 67 ~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr 113 (550)
.|+||++.|...+. ++.++|||.||..|+..|+.. ...||.||
T Consensus 2 ~C~IC~~~~~~~~~--~~~l~C~H~fh~~Ci~~~~~~--~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEK--VVKLPCGHVFHRSCIKEWLKR--NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSC--EEEETTSEEEEHHHHHHHHHH--SSB-TTTH
T ss_pred CCcCCChhhcCCCe--EEEccCCCeeCHHHHHHHHHh--CCcCCccC
Confidence 69999999974324 788899999999999999984 45899996
No 136
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.75 E-value=5.7e-09 Score=97.13 Aligned_cols=75 Identities=27% Similarity=0.404 Sum_probs=61.8
Q ss_pred chhhhccCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHH
Q psy15732 56 TTRILILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLEL 135 (550)
Q Consensus 56 ~~~~~~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~ 135 (550)
.+...-+...+.|-||..+|. - |..++|||+||.-||...+. ....||.||...... .++.++.+.++
T Consensus 16 IPSL~~LDs~lrC~IC~~~i~---i--p~~TtCgHtFCslCIR~hL~--~qp~CP~Cr~~~~es-----rlr~~s~~~ei 83 (391)
T COG5432 16 IPSLKGLDSMLRCRICDCRIS---I--PCETTCGHTFCSLCIRRHLG--TQPFCPVCREDPCES-----RLRGSSGSREI 83 (391)
T ss_pred CcchhcchhHHHhhhhhheee---c--ceecccccchhHHHHHHHhc--CCCCCccccccHHhh-----hcccchhHHHH
Confidence 334445667899999999999 8 99999999999999999998 556699999987654 37888888888
Q ss_pred HHHHHhc
Q psy15732 136 IEKIQTN 142 (550)
Q Consensus 136 ~~~~~~~ 142 (550)
++.+...
T Consensus 84 ~es~~~~ 90 (391)
T COG5432 84 NESHARN 90 (391)
T ss_pred HHhhhhc
Confidence 8876544
No 137
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.75 E-value=3.7e-08 Score=88.13 Aligned_cols=77 Identities=18% Similarity=0.213 Sum_probs=62.9
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCC--CCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDI--PGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl--~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|.+++++++.+..|+..+.... ..++|++|++||+|+ +.....+++.+... ...+.++++||++|.||+++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~sa~~~~~i~~~ 153 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAK------ENGLLFFETSAKTGENVEEL 153 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHH------HcCCeEEEEecCCCCCHHHH
Confidence 6777889999999998886553 357999999999999 45567777777665 24568999999999999999
Q ss_pred HHHHHH
Q psy15732 534 LDWLSR 539 (550)
Q Consensus 534 f~~l~~ 539 (550)
|+||++
T Consensus 154 ~~~i~~ 159 (159)
T cd00154 154 FQSLAE 159 (159)
T ss_pred HHHHhC
Confidence 999963
No 138
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.75 E-value=6.5e-09 Score=71.51 Aligned_cols=44 Identities=34% Similarity=0.942 Sum_probs=36.8
Q ss_pred eeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCC
Q psy15732 67 ECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQ 114 (550)
Q Consensus 67 ~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~ 114 (550)
.|++|.+.|.. ++.|++++|||+||..|+.... .....||+|++
T Consensus 1 ~C~~C~~~~~~--~~~~~l~~CgH~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSE--ERRPRLTSCGHIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccC--CCCeEEcccCCHHHHHHHHhhc--CCCCCCcCCCC
Confidence 48999999942 3458999999999999999987 35678999985
No 139
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.73 E-value=4.4e-08 Score=88.10 Aligned_cols=80 Identities=18% Similarity=0.210 Sum_probs=61.9
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|.++.+++.++..|+..+.......++|++|++||+|+.. ..+.+++...+. .....++++||++|.||+++
T Consensus 79 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~S~~~~~~i~~l 152 (160)
T cd00876 79 SITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK------EWGCPFIETSAKDNINIDEV 152 (160)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH------HcCCcEEEeccCCCCCHHHH
Confidence 6777889999988888776554335799999999999964 244555555444 22367999999999999999
Q ss_pred HHHHHHHH
Q psy15732 534 LDWLSRQL 541 (550)
Q Consensus 534 f~~l~~~~ 541 (550)
|+||++.+
T Consensus 153 ~~~l~~~i 160 (160)
T cd00876 153 FKLLVREI 160 (160)
T ss_pred HHHHHhhC
Confidence 99998753
No 140
>KOG0320|consensus
Probab=98.71 E-value=7.7e-09 Score=90.11 Aligned_cols=52 Identities=31% Similarity=0.602 Sum_probs=45.2
Q ss_pred CCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
...+.||||+..|. ++.|+...|||.||..||...+. ....||+|++.+...
T Consensus 129 ~~~~~CPiCl~~~s---ek~~vsTkCGHvFC~~Cik~alk--~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 129 EGTYKCPICLDSVS---EKVPVSTKCGHVFCSQCIKDALK--NTNKCPTCRKKITHK 180 (187)
T ss_pred ccccCCCceecchh---hccccccccchhHHHHHHHHHHH--hCCCCCCcccccchh
Confidence 35689999999999 77799999999999999999887 556799999877654
No 141
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.71 E-value=7e-08 Score=88.45 Aligned_cols=84 Identities=14% Similarity=0.195 Sum_probs=53.7
Q ss_pred CccchhhHHHHH-HHHHHHhhccCcCCCeEEEEecCCCCCCCCC-HHHHHHhcCCC-------ccc-CCCcEEEEEeccc
Q psy15732 456 DSADKERLPEAL-AELTKLIAEKELKDAALLLLANKQDIPGCET-VESITEAFDLY-------KLC-CGRSWHIQACNAQ 525 (550)
Q Consensus 456 D~~d~~~~~~~~-~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~-~~~i~~~~~l~-------~~~-~~~~~~~~~~SA~ 525 (550)
|.++.++|+... .|+..+... ..++|++|++||.|+..... .+++....... .+. .-..+.+++|||+
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 666777887775 466666432 35789999999999964321 11111100000 000 0123589999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy15732 526 SGEGLHEGLDWLSRQL 541 (550)
Q Consensus 526 ~g~gi~e~f~~l~~~~ 541 (550)
+|.||+++|+||++.+
T Consensus 159 ~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 159 TKEGVREVFEMATRAA 174 (175)
T ss_pred cCcCHHHHHHHHHHHh
Confidence 9999999999998754
No 142
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.70 E-value=6.7e-09 Score=73.75 Aligned_cols=46 Identities=39% Similarity=0.692 Sum_probs=39.8
Q ss_pred cceeccccccccccCCCCcEEecCCCc-chhhhHhhcccCCCccCCCCCCCccc
Q psy15732 65 ALECRVCEDIFLTQGDKVPRLLHCGHT-VCLACLLRLPIKDDTITCPFDRQPTP 117 (550)
Q Consensus 65 ~l~C~iC~~~~~~~~~~~P~~l~CgH~-fC~~Cl~~~~~~~~~~~CP~Cr~~~~ 117 (550)
+..|.||++... + ++++||||. ||..|+.+++. ....||+||+++.
T Consensus 2 ~~~C~iC~~~~~---~--~~~~pCgH~~~C~~C~~~~~~--~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPR---D--VVLLPCGHLCFCEECAERLLK--RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBS---S--EEEETTCEEEEEHHHHHHHHH--TTSBBTTTTBB-S
T ss_pred cCCCccCCccCC---c--eEEeCCCChHHHHHHhHHhcc--cCCCCCcCChhhc
Confidence 568999999998 8 999999999 99999999988 6678999998864
No 143
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.70 E-value=6.6e-08 Score=88.59 Aligned_cols=76 Identities=11% Similarity=0.103 Sum_probs=54.7
Q ss_pred CccchhhHHHHH-HHHHHHhhccCcCCCeEEEEecCCCCCCC--------------CCHHHHHHhcCCCcccCCCcEEEE
Q psy15732 456 DSADKERLPEAL-AELTKLIAEKELKDAALLLLANKQDIPGC--------------ETVESITEAFDLYKLCCGRSWHIQ 520 (550)
Q Consensus 456 D~~d~~~~~~~~-~~l~~~~~~~~~~~~pili~~NK~Dl~~~--------------~~~~~i~~~~~l~~~~~~~~~~~~ 520 (550)
|.+|+++|+... .|+..+... ..++|++|+|||.|+... +..+++..... ....+.|+
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~-----~~~~~~~~ 152 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAE-----KIGACEYI 152 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHH-----HhCCCeEE
Confidence 788999999885 577776532 356999999999999542 22233333222 12235899
Q ss_pred EecccCCCCHHHHHHHHH
Q psy15732 521 ACNAQSGEGLHEGLDWLS 538 (550)
Q Consensus 521 ~~SA~~g~gi~e~f~~l~ 538 (550)
+|||++|.||+++|+++.
T Consensus 153 e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 153 ECSALTQKNLKEVFDTAI 170 (173)
T ss_pred EEeCCCCCCHHHHHHHHH
Confidence 999999999999999886
No 144
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.70 E-value=1.2e-07 Score=86.60 Aligned_cols=76 Identities=17% Similarity=0.190 Sum_probs=56.6
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCC-----CHHHHHHhcCCCcccCCCcEEEEEecccCCCCH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCE-----TVESITEAFDLYKLCCGRSWHIQACNAQSGEGL 530 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~-----~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi 530 (550)
|.+++++|+.+..|+..+.. ..++|++||+||.|+.... ..+++.+.+++. .++++||++|.||
T Consensus 86 d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~~~~~v 154 (169)
T cd01892 86 DSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLP--------PPLHFSSKLGDSS 154 (169)
T ss_pred eCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCCC--------CCEEEEeccCccH
Confidence 67788899988888876532 2469999999999995432 234444444421 2478999999999
Q ss_pred HHHHHHHHHHHH
Q psy15732 531 HEGLDWLSRQLI 542 (550)
Q Consensus 531 ~e~f~~l~~~~~ 542 (550)
+++|++|++.+.
T Consensus 155 ~~lf~~l~~~~~ 166 (169)
T cd01892 155 NELFTKLATAAQ 166 (169)
T ss_pred HHHHHHHHHHhh
Confidence 999999999875
No 145
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.69 E-value=8e-08 Score=87.98 Aligned_cols=79 Identities=15% Similarity=0.115 Sum_probs=55.5
Q ss_pred CccchhhHHHHH-HHHHHHhhccCcCCCeEEEEecCCCCCCC--------------CCHHHHHHhcCCCcccCCCcEEEE
Q psy15732 456 DSADKERLPEAL-AELTKLIAEKELKDAALLLLANKQDIPGC--------------ETVESITEAFDLYKLCCGRSWHIQ 520 (550)
Q Consensus 456 D~~d~~~~~~~~-~~l~~~~~~~~~~~~pili~~NK~Dl~~~--------------~~~~~i~~~~~l~~~~~~~~~~~~ 520 (550)
|.+++++|+... .|+..+... ..++|++|++||+|+.+. ++.++....+. .-....++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~ 152 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAK-----EIGAHCYV 152 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHH-----HcCCCEEE
Confidence 677888898886 466666433 467999999999999543 22222222221 01223689
Q ss_pred EecccCCCCHHHHHHHHHHHH
Q psy15732 521 ACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 521 ~~SA~~g~gi~e~f~~l~~~~ 541 (550)
+|||++|.||+++|+.++..+
T Consensus 153 e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 153 ECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred EecCCcCCCHHHHHHHHHHHh
Confidence 999999999999999998865
No 146
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.68 E-value=1e-07 Score=86.84 Aligned_cols=80 Identities=15% Similarity=0.107 Sum_probs=56.3
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCC-HHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCET-VESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGL 534 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~-~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f 534 (550)
|+++..+|+....|+..+... ...++|+++++||.|+..... ..++...+. ....+.++++||++|.|++++|
T Consensus 88 d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~ 161 (169)
T cd04114 88 DITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFS-----DAQDMYYLETSAKESDNVEKLF 161 (169)
T ss_pred ECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCeEEEeeCCCCCCHHHHH
Confidence 667778888887887766332 224689999999999964322 122222222 1234689999999999999999
Q ss_pred HHHHHHH
Q psy15732 535 DWLSRQL 541 (550)
Q Consensus 535 ~~l~~~~ 541 (550)
+||+..+
T Consensus 162 ~~i~~~~ 168 (169)
T cd04114 162 LDLACRL 168 (169)
T ss_pred HHHHHHh
Confidence 9999864
No 147
>KOG0395|consensus
Probab=98.67 E-value=1.2e-07 Score=88.18 Aligned_cols=82 Identities=17% Similarity=0.138 Sum_probs=68.9
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
+++|..+|+++..++..++.......+|+++||||+||.. .++.++..+... .....|++|||+...+|+++
T Consensus 83 sitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~------~~~~~f~E~Sak~~~~v~~~ 156 (196)
T KOG0395|consen 83 SITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALAR------SWGCAFIETSAKLNYNVDEV 156 (196)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHH------hcCCcEEEeeccCCcCHHHH
Confidence 7899999999999998887666667799999999999975 567777665533 44557999999999999999
Q ss_pred HHHHHHHHHH
Q psy15732 534 LDWLSRQLIA 543 (550)
Q Consensus 534 f~~l~~~~~~ 543 (550)
|.-|...+..
T Consensus 157 F~~L~r~~~~ 166 (196)
T KOG0395|consen 157 FYELVREIRL 166 (196)
T ss_pred HHHHHHHHHh
Confidence 9999998866
No 148
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.65 E-value=1.4e-07 Score=89.83 Aligned_cols=81 Identities=14% Similarity=0.207 Sum_probs=61.7
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|.++..+|..+..|+..+... ..++|+++++||.|+.......+..+... ...+.++++||++|.||+++|.
T Consensus 90 d~~~~~s~~~~~~~~~~i~~~--~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~e~Sa~~~~~v~~~f~ 161 (215)
T PTZ00132 90 DVTSRITYKNVPNWHRDIVRV--CENIPIVLVGNKVDVKDRQVKARQITFHR------KKNLQYYDISAKSNYNFEKPFL 161 (215)
T ss_pred ECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccCccccCCHHHHHHHH------HcCCEEEEEeCCCCCCHHHHHH
Confidence 778888999999998887643 25789999999999964322222222222 3457899999999999999999
Q ss_pred HHHHHHHHh
Q psy15732 536 WLSRQLIAA 544 (550)
Q Consensus 536 ~l~~~~~~~ 544 (550)
||++.+...
T Consensus 162 ~ia~~l~~~ 170 (215)
T PTZ00132 162 WLARRLTND 170 (215)
T ss_pred HHHHHHhhc
Confidence 999988654
No 149
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.62 E-value=1.1e-07 Score=95.92 Aligned_cols=93 Identities=23% Similarity=0.153 Sum_probs=61.9
Q ss_pred EEEEeeCCCCCccchhhHHHHHHHHHHHhhc-cCcCCCeEEEEecCCCCCCCCCHH--HHHHhcCCCcccCCCcEEEEEe
Q psy15732 446 RVVTLGLDSADSADKERLPEALAELTKLIAE-KELKDAALLLLANKQDIPGCETVE--SITEAFDLYKLCCGRSWHIQAC 522 (550)
Q Consensus 446 ~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~-~~~~~~pili~~NK~Dl~~~~~~~--~i~~~~~l~~~~~~~~~~~~~~ 522 (550)
.++++.+|..|. ++++....|+.++... +.+.++|++||+||+|+....... .+...+. ...+.++++
T Consensus 238 ~vlI~ViD~s~~---~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~------~~~~~i~~i 308 (335)
T PRK12299 238 RLLLHLVDIEAV---DPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELA------ALGGPVFLI 308 (335)
T ss_pred CEEEEEEcCCCC---CCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHH------hcCCCEEEE
Confidence 456666666533 2455555555555332 334578999999999996543222 1222211 234689999
Q ss_pred cccCCCCHHHHHHHHHHHHHHhcCC
Q psy15732 523 NAQSGEGLHEGLDWLSRQLIAAGVN 547 (550)
Q Consensus 523 SA~~g~gi~e~f~~l~~~~~~~~~~ 547 (550)
||++|+||+++|+||.+.+.+.++.
T Consensus 309 SAktg~GI~eL~~~L~~~l~~~~~~ 333 (335)
T PRK12299 309 SAVTGEGLDELLRALWELLEEARRE 333 (335)
T ss_pred EcCCCCCHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999998776543
No 150
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.58 E-value=2.1e-07 Score=84.58 Aligned_cols=81 Identities=12% Similarity=0.163 Sum_probs=55.3
Q ss_pred CccchhhHHHHH-HHHHHHhhccCcCCCeEEEEecCCCCCCCCCH----HHHHHhcCCCcccCCCcEEEEEecccCCCCH
Q psy15732 456 DSADKERLPEAL-AELTKLIAEKELKDAALLLLANKQDIPGCETV----ESITEAFDLYKLCCGRSWHIQACNAQSGEGL 530 (550)
Q Consensus 456 D~~d~~~~~~~~-~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~----~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi 530 (550)
|.+++++|+... .|+..+.... .++|++|++||+|+.+.... +++..... .+ .....+++|||++|.||
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~--~~--~~~~~~~e~Sa~~~~~v 152 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMN--EF--REIETCVECSAKTLINV 152 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcccccchhHHHHHHHHHHH--HH--hcccEEEEeccccccCH
Confidence 677788898875 4666554332 47999999999999665432 22221111 11 11137899999999999
Q ss_pred HHHHHHHHHHHH
Q psy15732 531 HEGLDWLSRQLI 542 (550)
Q Consensus 531 ~e~f~~l~~~~~ 542 (550)
+++|+.+.+.+.
T Consensus 153 ~~lf~~~~~~~~ 164 (166)
T cd01893 153 SEVFYYAQKAVL 164 (166)
T ss_pred HHHHHHHHHHhc
Confidence 999999988664
No 151
>KOG0823|consensus
Probab=98.56 E-value=3.7e-08 Score=90.09 Aligned_cols=53 Identities=25% Similarity=0.629 Sum_probs=45.9
Q ss_pred cCCcceeccccccccccCCCCcEEecCCCcchhhhHhhccc-CCCccCCCCCCCcccCC
Q psy15732 62 LELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPI-KDDTITCPFDRQPTPVG 119 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~-~~~~~~CP~Cr~~~~~~ 119 (550)
....+.|.||++.-+ + |+++.|||-||+.||.+|+. ......||+|+..+...
T Consensus 44 ~~~~FdCNICLd~ak---d--PVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAK---D--PVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CCCceeeeeeccccC---C--CEEeecccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence 356899999999999 9 99999999999999999987 34556789999887654
No 152
>KOG0317|consensus
Probab=98.52 E-value=4.6e-08 Score=92.12 Aligned_cols=52 Identities=27% Similarity=0.619 Sum_probs=45.0
Q ss_pred ccCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 61 ILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 61 ~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
..+....|.+|++.-. + |--+||||.||+.||..|.. ....||.||..+...
T Consensus 235 i~~a~~kC~LCLe~~~---~--pSaTpCGHiFCWsCI~~w~~--ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRS---N--PSATPCGHIFCWSCILEWCS--EKAECPLCREKFQPS 286 (293)
T ss_pred CCCCCCceEEEecCCC---C--CCcCcCcchHHHHHHHHHHc--cccCCCcccccCCCc
Confidence 3456789999999999 8 99999999999999999988 444599999998754
No 153
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.51 E-value=3.8e-07 Score=83.08 Aligned_cols=77 Identities=14% Similarity=0.129 Sum_probs=53.9
Q ss_pred CccchhhHHHHHH-HHHHHhhccCcCCCeEEEEecCCCCCCCCC-------------HHHHHHhcCCCcccCCCcEEEEE
Q psy15732 456 DSADKERLPEALA-ELTKLIAEKELKDAALLLLANKQDIPGCET-------------VESITEAFDLYKLCCGRSWHIQA 521 (550)
Q Consensus 456 D~~d~~~~~~~~~-~l~~~~~~~~~~~~pili~~NK~Dl~~~~~-------------~~~i~~~~~l~~~~~~~~~~~~~ 521 (550)
|.++..+|..... |+..+.... .++|++||+||+|+..... .++..+... ..+...+++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~ 152 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYC--PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAK-----EIGAIGYME 152 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHH-----HhCCeEEEE
Confidence 6677788877764 555554332 4799999999999965532 222232222 122348999
Q ss_pred ecccCCCCHHHHHHHHHH
Q psy15732 522 CNAQSGEGLHEGLDWLSR 539 (550)
Q Consensus 522 ~SA~~g~gi~e~f~~l~~ 539 (550)
+||++|.||+++|+||.+
T Consensus 153 ~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 153 CSALTQEGVKEVFEEAIR 170 (171)
T ss_pred eecCCCCCHHHHHHHHhh
Confidence 999999999999999975
No 154
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.51 E-value=2.4e-07 Score=84.34 Aligned_cols=88 Identities=20% Similarity=0.183 Sum_probs=56.1
Q ss_pred EEEEeeCCCCCccchhhHHHHHHHHHHHhhcc-CcCCCeEEEEecCCCCCCCCCHHH-HHHhcCCCcccCCCcEEEEEec
Q psy15732 446 RVVTLGLDSADSADKERLPEALAELTKLIAEK-ELKDAALLLLANKQDIPGCETVES-ITEAFDLYKLCCGRSWHIQACN 523 (550)
Q Consensus 446 ~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~-~~~~~pili~~NK~Dl~~~~~~~~-i~~~~~l~~~~~~~~~~~~~~S 523 (550)
..+++.+|..+.. +.++....|++.+.... ...++|++||+||+|+.+.....+ +...+. ......++++|
T Consensus 80 d~vi~v~D~~~~~--~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~S 152 (170)
T cd01898 80 RLLLHVIDLSGDD--DPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLK-----ELWGKPVFPIS 152 (170)
T ss_pred CEEEEEEecCCCC--CHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHh-----hCCCCCEEEEe
Confidence 3566666665441 34444445554443321 235689999999999965433333 222222 11356789999
Q ss_pred ccCCCCHHHHHHHHHHH
Q psy15732 524 AQSGEGLHEGLDWLSRQ 540 (550)
Q Consensus 524 A~~g~gi~e~f~~l~~~ 540 (550)
|++|.||+++|+||++.
T Consensus 153 a~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 153 ALTGEGLDELLRKLAEL 169 (170)
T ss_pred cCCCCCHHHHHHHHHhh
Confidence 99999999999999875
No 155
>KOG0804|consensus
Probab=98.51 E-value=3.3e-06 Score=84.09 Aligned_cols=89 Identities=18% Similarity=0.316 Sum_probs=62.6
Q ss_pred hccCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHHHHH
Q psy15732 60 LILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELIEKI 139 (550)
Q Consensus 60 ~~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~~~ 139 (550)
..+.+..+||||++.+... .---+++.|.|+|-..|+..||. .+||+||.... +. .++.
T Consensus 170 ~~~tELPTCpVCLERMD~s-~~gi~t~~c~Hsfh~~cl~~w~~----~scpvcR~~q~-p~--------------~ve~- 228 (493)
T KOG0804|consen 170 TGLTELPTCPVCLERMDSS-TTGILTILCNHSFHCSCLMKWWD----SSCPVCRYCQS-PS--------------VVES- 228 (493)
T ss_pred CCcccCCCcchhHhhcCcc-ccceeeeecccccchHHHhhccc----CcChhhhhhcC-cc--------------hhhh-
Confidence 3466788999999999842 10024559999999999999976 46999997755 21 0110
Q ss_pred HhccccccccCCcchhhhhcccccccccccCCCCccccccccccccchhhhhHhhhhhc
Q psy15732 140 QTNDEKATESIPLFSAELHIKCDFSLQLHIKCDEDESHIAVLYCTVCASHLCEQCASDS 198 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~C~~~~~~~A~~~C~~C~~~lC~~C~~~h 198 (550)
..|..|........|.-|+-.-|..=...|
T Consensus 229 -----------------------------~~c~~c~~~~~LwicliCg~vgcgrY~egh 258 (493)
T KOG0804|consen 229 -----------------------------SLCLACGCTEDLWICLICGNVGCGRYKEGH 258 (493)
T ss_pred -----------------------------hhhhhhcccccEEEEEEccceecccccchh
Confidence 126667777788899999987776555444
No 156
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.49 E-value=2.4e-07 Score=93.38 Aligned_cols=92 Identities=21% Similarity=0.212 Sum_probs=59.0
Q ss_pred EEEEEeeCCCCCccchhhHHHHHHHHHHHhh-ccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEec
Q psy15732 445 MRVVTLGLDSADSADKERLPEALAELTKLIA-EKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACN 523 (550)
Q Consensus 445 ~~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~-~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~S 523 (550)
..++++.+|..+....+.++....|++++.. +..+.++|++||+||+|+......+++.+.+. ....+.++++|
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~-----~~~~~~vi~iS 310 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELK-----KALGKPVFPIS 310 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHH-----HHcCCcEEEEE
Confidence 3456666776543111344444444444322 23346789999999999976543444444332 12246799999
Q ss_pred ccCCCCHHHHHHHHHHHH
Q psy15732 524 AQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 524 A~~g~gi~e~f~~l~~~~ 541 (550)
|++|+||+++|+||.+.+
T Consensus 311 Aktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 311 ALTGEGLDELLYALAELL 328 (329)
T ss_pred ccCCcCHHHHHHHHHHHh
Confidence 999999999999999865
No 157
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=98.47 E-value=7e-06 Score=77.25 Aligned_cols=118 Identities=16% Similarity=0.125 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 282 SSNVQHLIEEITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHLRESLLVQEAAATSAVDMFVRERLGCLV 361 (550)
Q Consensus 282 l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~ 361 (550)
-..|+++-..+.....++...+.++.. ....++..|++..+++...++.+|++||+.++..++...+.|.
T Consensus 5 tq~LqeQ~~~F~aahaqm~sav~qL~~----------~r~~teelIr~rVrq~V~hVqaqEreLLe~v~~rYqR~y~ema 74 (324)
T PF12126_consen 5 TQALQEQDGAFGAAHAQMRSAVSQLGR----------ARADTEELIRARVRQVVAHVQAQERELLEAVEARYQRDYEEMA 74 (324)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHH----------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777777888888888888 8888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-CchhHhhchhHHHHHHHHHHhh
Q psy15732 362 QLHDDMGFWLQEVAKLYLKCEQMILQ-DDARVLTSGREIKEAIETIEKY 409 (550)
Q Consensus 362 ~~~~~l~~~~~~l~~~~~~~e~~l~~-~~~~~L~~~~~~~~~l~~~~~~ 409 (550)
.++..|...+++|+.....++++... +|.++|.+++.+++.|.++...
T Consensus 75 ~~L~~LeavLqRir~G~~LVekM~~YASDQEVLdMh~FlreAL~rLrqe 123 (324)
T PF12126_consen 75 GQLGRLEAVLQRIRTGGALVEKMKLYASDQEVLDMHGFLREALERLRQE 123 (324)
T ss_pred HHHhHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999887 9999999999999999998754
No 158
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.47 E-value=8.4e-08 Score=90.33 Aligned_cols=53 Identities=25% Similarity=0.511 Sum_probs=40.4
Q ss_pred CCcceeccccccccccC---CCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCccc
Q psy15732 63 ELALECRVCEDIFLTQG---DKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTP 117 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~---~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~ 117 (550)
.....|+||++.+...+ .+.+++++|||.||..|+..|+. ....||.||..+.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~--~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK--EKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh--cCCCCCCCCCEee
Confidence 45689999999877210 01235568999999999999987 4567999998875
No 159
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.41 E-value=1.1e-06 Score=80.76 Aligned_cols=56 Identities=18% Similarity=0.377 Sum_probs=41.7
Q ss_pred CCCeEEEEecCCCCCCCCC---HHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCET---VESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~---~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
.++|++|++||+|+.+... ..++.+.+++ ..+.++++||++|+||+++|+||++.+
T Consensus 118 ~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 118 NNLEIIPVINKIDLPSADPERVKQQIEDVLGL------DPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCC------CcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 3589999999999965432 1344444442 124689999999999999999999875
No 160
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.40 E-value=1.7e-07 Score=64.68 Aligned_cols=43 Identities=37% Similarity=0.902 Sum_probs=36.4
Q ss_pred eeccccccccccCCCCcEEe-cCCCcchhhhHhhcccCCCccCCCCCCCc
Q psy15732 67 ECRVCEDIFLTQGDKVPRLL-HCGHTVCLACLLRLPIKDDTITCPFDRQP 115 (550)
Q Consensus 67 ~C~iC~~~~~~~~~~~P~~l-~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~ 115 (550)
.|+||++.+. + |..+ +|||.||..|+..|+.. ....||.|+..
T Consensus 1 ~C~iC~~~~~---~--~~~~~~C~H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFR---E--PVVLLPCGHVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhh---C--ceEecCCCChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 4899999996 7 8777 59999999999998874 45679999875
No 161
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.38 E-value=2.9e-05 Score=75.48 Aligned_cols=50 Identities=26% Similarity=0.616 Sum_probs=37.7
Q ss_pred cceeccccccccccCCCCcE---Ee-cCCCcchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 65 ALECRVCEDIFLTQGDKVPR---LL-HCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 65 ~l~C~iC~~~~~~~~~~~P~---~l-~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
+..||+|...-.. . |. ++ +|||.||.+|+..+|.. +...||.|+..+...
T Consensus 3 ~~~CP~Ck~~~y~--n--p~~kl~i~~CGH~~C~sCv~~l~~~-~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 3 DQGCPRCKTTKYR--N--PSLKLMVNVCGHTLCESCVDLLFVR-GSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCcCCCCCcc--C--cccccccCCCCCcccHHHHHHHhcC-CCCCCCCCCCccchh
Confidence 4689999984221 3 53 22 79999999999998875 445899999887654
No 162
>PRK04213 GTP-binding protein; Provisional
Probab=98.36 E-value=5e-07 Score=84.95 Aligned_cols=67 Identities=25% Similarity=0.382 Sum_probs=48.4
Q ss_pred CCCeEEEEecCCCCCCCC--CHHHHHHhcCCCcccCCCcE--EEEEecccCCCCHHHHHHHHHHHHHHhcCCCC
Q psy15732 480 KDAALLLLANKQDIPGCE--TVESITEAFDLYKLCCGRSW--HIQACNAQSGEGLHEGLDWLSRQLIAAGVNDM 549 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~--~~~~i~~~~~l~~~~~~~~~--~~~~~SA~~g~gi~e~f~~l~~~~~~~~~~~~ 549 (550)
.++|++||+||+|+.+.. ...++.+.+++... .+.| .++++||++| ||+++|+||++.+...+..++
T Consensus 129 ~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~~~~ 199 (201)
T PRK04213 129 LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPP--WRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKRDDL 199 (201)
T ss_pred cCCCeEEEEECccccCcHHHHHHHHHHHhcCCcc--ccccCCcEEEEecccC-CHHHHHHHHHHhhcCcccccc
Confidence 368999999999996543 34455665664211 1123 6899999999 999999999998876555443
No 163
>PHA02926 zinc finger-like protein; Provisional
Probab=98.32 E-value=3.2e-07 Score=83.20 Aligned_cols=60 Identities=20% Similarity=0.499 Sum_probs=42.7
Q ss_pred hhhccCCcceecccccccccc---CCC-CcEEecCCCcchhhhHhhcccC----CCccCCCCCCCccc
Q psy15732 58 RILILELALECRVCEDIFLTQ---GDK-VPRLLHCGHTVCLACLLRLPIK----DDTITCPFDRQPTP 117 (550)
Q Consensus 58 ~~~~~~~~l~C~iC~~~~~~~---~~~-~P~~l~CgH~fC~~Cl~~~~~~----~~~~~CP~Cr~~~~ 117 (550)
.+...+.+..|+||++...+. ++| -++..+|+|+||..|+..|... +....||.||..+.
T Consensus 163 ~~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 163 DVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred HHHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 344456789999999886420 022 2344599999999999998763 22456999999875
No 164
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.30 E-value=4e-07 Score=60.57 Aligned_cols=39 Identities=36% Similarity=0.870 Sum_probs=33.6
Q ss_pred eccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCC
Q psy15732 68 CRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFD 112 (550)
Q Consensus 68 C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~C 112 (550)
|+||++... + ++.++|||.||..|+..|+. .....||.|
T Consensus 1 C~iC~~~~~---~--~~~~~C~H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELK---D--PVVLPCGHTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCCC---C--cEEecCCChHHHHHHHHHHH-hCcCCCCCC
Confidence 789999977 7 99999999999999999876 345679987
No 165
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.29 E-value=1.9e-06 Score=81.13 Aligned_cols=83 Identities=23% Similarity=0.259 Sum_probs=52.1
Q ss_pred EEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEeccc
Q psy15732 446 RVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQ 525 (550)
Q Consensus 446 ~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~ 525 (550)
..+++.+|.. ++.++.....|...+ ......++|++||+||+|+.+... +...+. .....++++||+
T Consensus 122 d~ii~v~D~~---~~~~~~~~~~~~~~l-~~~~~~~~~viiV~NK~Dl~~~~~---~~~~~~------~~~~~~~~~Sa~ 188 (204)
T cd01878 122 DLLLHVVDAS---DPDYEEQIETVEKVL-KELGAEDIPMILVLNKIDLLDDEE---LEERLE------AGRPDAVFISAK 188 (204)
T ss_pred CeEEEEEECC---CCChhhHHHHHHHHH-HHcCcCCCCEEEEEEccccCChHH---HHHHhh------cCCCceEEEEcC
Confidence 3455555554 334444333333322 222335689999999999965422 222221 345578999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy15732 526 SGEGLHEGLDWLSRQL 541 (550)
Q Consensus 526 ~g~gi~e~f~~l~~~~ 541 (550)
+|.||+++|+||...+
T Consensus 189 ~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 189 TGEGLDELLEAIEELL 204 (204)
T ss_pred CCCCHHHHHHHHHhhC
Confidence 9999999999998753
No 166
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.28 E-value=2.6e-06 Score=88.31 Aligned_cols=91 Identities=24% Similarity=0.279 Sum_probs=58.4
Q ss_pred EEEEEeeCCCCCccch---hhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEE
Q psy15732 445 MRVVTLGLDSADSADK---ERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQA 521 (550)
Q Consensus 445 ~~~~~~~~d~~D~~d~---~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~ 521 (550)
..++++.+|.++.... +.+..+..||... ++.+.++|++||+||+||+.. .+.+.+... ...+.+++
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y--~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~------~l~~~i~~ 306 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLY--NPRLLERPQIVVANKMDLPEA--EENLEEFKE------KLGPKVFP 306 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhh--chhccCCcEEEEEeCCCCcCC--HHHHHHHHH------HhCCcEEE
Confidence 3556666666543222 3444444555443 233467999999999999543 222222221 11157899
Q ss_pred ecccCCCCHHHHHHHHHHHHHHhc
Q psy15732 522 CNAQSGEGLHEGLDWLSRQLIAAG 545 (550)
Q Consensus 522 ~SA~~g~gi~e~f~~l~~~~~~~~ 545 (550)
+||++|+||+++|+||.+.+.+..
T Consensus 307 iSA~tgeGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 307 ISALTGQGLDELLYAVAELLEETP 330 (424)
T ss_pred EeCCCCCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999886643
No 167
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.26 E-value=2.2e-06 Score=90.08 Aligned_cols=93 Identities=24% Similarity=0.304 Sum_probs=61.3
Q ss_pred EEEEEeeCCCCCcc---c-hhhHHHHHHHHHHHhhcc-------CcCCCeEEEEecCCCCCCCCCHH-HHHHhcCCCccc
Q psy15732 445 MRVVTLGLDSADSA---D-KERLPEALAELTKLIAEK-------ELKDAALLLLANKQDIPGCETVE-SITEAFDLYKLC 512 (550)
Q Consensus 445 ~~~~~~~~d~~D~~---d-~~~~~~~~~~l~~~~~~~-------~~~~~pili~~NK~Dl~~~~~~~-~i~~~~~l~~~~ 512 (550)
..++++++|.++.. | .+.+..+..+|..+.... .+.+.|+|||+||+|++++.... .+...+.
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~----- 311 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELE----- 311 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHH-----
Confidence 34566667765432 1 234555555665553211 34578999999999997543222 2222222
Q ss_pred CCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 513 CGRSWHIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 513 ~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
...|.+|++||++|+||++++.||.+.+..
T Consensus 312 -~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 312 -ARGWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred -HcCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 346789999999999999999999998855
No 168
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.22 E-value=1.1e-06 Score=77.50 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=38.0
Q ss_pred CeEEEEecCCCCCC-CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHH
Q psy15732 482 AALLLLANKQDIPG-CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLS 538 (550)
Q Consensus 482 ~pili~~NK~Dl~~-~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~ 538 (550)
.|+++++||+||.+ ....+++.+.+.. .....++++||++|+||+++|+||+
T Consensus 89 ~p~ilv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 89 KPVIGLVTKIDLAEADVDIERAKELLET-----AGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred CCeEEEEEeeccCCcccCHHHHHHHHHH-----cCCCcEEEEecCCCCCHHHHHHHHh
Confidence 39999999999964 3344444444431 1123689999999999999999986
No 169
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.20 E-value=2.2e-06 Score=82.88 Aligned_cols=73 Identities=16% Similarity=0.228 Sum_probs=49.2
Q ss_pred ccchh-hHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHH-HHHHhcCCCcccCCCcEEEEEecccCCCCHHHHH
Q psy15732 457 SADKE-RLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVE-SITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGL 534 (550)
Q Consensus 457 ~~d~~-~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~-~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f 534 (550)
.+++. +|.....||..+ .+ .++|++||+||+||....... +..+.+. ...+.++.+||++|+||+++|
T Consensus 46 ~~~p~~s~~~l~r~l~~~-~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~~------~~g~~v~~~SAktg~gi~eLf 115 (245)
T TIGR00157 46 AVLPELSLNQLDRFLVVA-EA---QNIEPIIVLNKIDLLDDEDMEKEQLDIYR------NIGYQVLMTSSKNQDGLKELI 115 (245)
T ss_pred CCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEECcccCCCHHHHHHHHHHHH------HCCCeEEEEecCCchhHHHHH
Confidence 34333 566667777644 22 468999999999995432111 2222222 335689999999999999999
Q ss_pred HHHHH
Q psy15732 535 DWLSR 539 (550)
Q Consensus 535 ~~l~~ 539 (550)
++|..
T Consensus 116 ~~l~~ 120 (245)
T TIGR00157 116 EALQN 120 (245)
T ss_pred hhhcC
Confidence 99875
No 170
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.18 E-value=6.6e-06 Score=72.34 Aligned_cols=79 Identities=23% Similarity=0.292 Sum_probs=56.2
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHH--HhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESIT--EAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~--~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|.++..++.....|+..........++|++|++||.|+.......... .... ....+.++++||++|.|++++
T Consensus 77 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~~ 151 (157)
T cd00882 77 DVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLA-----KELGVPYFETSAKTGENVEEL 151 (157)
T ss_pred ECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHH-----hhcCCcEEEEecCCCCChHHH
Confidence 566677787777774444344445679999999999997654433331 1111 145678999999999999999
Q ss_pred HHHHHH
Q psy15732 534 LDWLSR 539 (550)
Q Consensus 534 f~~l~~ 539 (550)
|+||.+
T Consensus 152 ~~~l~~ 157 (157)
T cd00882 152 FEELAE 157 (157)
T ss_pred HHHHhC
Confidence 999863
No 171
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.17 E-value=2.6e-06 Score=77.83 Aligned_cols=91 Identities=16% Similarity=0.126 Sum_probs=57.1
Q ss_pred EEEEeeCCCCCccc---hhhHHHHHHHHHHHhhccC------cCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCc
Q psy15732 446 RVVTLGLDSADSAD---KERLPEALAELTKLIAEKE------LKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRS 516 (550)
Q Consensus 446 ~~~~~~~d~~D~~d---~~~~~~~~~~l~~~~~~~~------~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~ 516 (550)
..+++.+|+.+..+ ...+.+...|+..+..... ..++|++||+||+|+.......+...... . ....
T Consensus 76 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~---~-~~~~ 151 (176)
T cd01881 76 DAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVREL---A-LEEG 151 (176)
T ss_pred CEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHH---h-cCCC
Confidence 34566666644321 1455555666665543322 24689999999999965433332210011 1 1345
Q ss_pred EEEEEecccCCCCHHHHHHHHHHH
Q psy15732 517 WHIQACNAQSGEGLHEGLDWLSRQ 540 (550)
Q Consensus 517 ~~~~~~SA~~g~gi~e~f~~l~~~ 540 (550)
..++++||++|.|++++++||...
T Consensus 152 ~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 152 AEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred CCEEEEehhhhcCHHHHHHHHHhh
Confidence 679999999999999999999764
No 172
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.11 E-value=1.2e-05 Score=71.50 Aligned_cols=72 Identities=17% Similarity=0.266 Sum_probs=47.5
Q ss_pred hhHHHHH-HHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHH
Q psy15732 461 ERLPEAL-AELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLS 538 (550)
Q Consensus 461 ~~~~~~~-~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~ 538 (550)
..+.... .|+..+..... .++|++|++||.|+............+.. .....++++||++|.|+.++|+||-
T Consensus 88 ~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 88 LDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAK-----LNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred hhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhh-----ccCCceEEeecCCCCCHHHHHHHhh
Confidence 3444444 44444433222 27899999999999654334444444442 2234599999999999999999984
No 173
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.08 E-value=1.4e-05 Score=71.29 Aligned_cols=77 Identities=26% Similarity=0.299 Sum_probs=60.7
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|+++...+ ++..-+. ++... ..+|++|++||+||+++.++++|.+.+.+.. ...++++.+|..|+|+.++++
T Consensus 100 Dss~~~~~-~a~~ii~-f~~~~--~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~----~~~~vi~~~a~e~~~~~~~L~ 171 (187)
T COG2229 100 DSSRPITF-HAEEIID-FLTSR--NPIPVVVAINKQDLFDALPPEKIREALKLEL----LSVPVIEIDATEGEGARDQLD 171 (187)
T ss_pred ecCCCcch-HHHHHHH-HHhhc--cCCCEEEEeeccccCCCCCHHHHHHHHHhcc----CCCceeeeecccchhHHHHHH
Confidence 66666666 4444333 33332 1299999999999999999999999999743 367899999999999999999
Q ss_pred HHHHH
Q psy15732 536 WLSRQ 540 (550)
Q Consensus 536 ~l~~~ 540 (550)
.|...
T Consensus 172 ~ll~~ 176 (187)
T COG2229 172 VLLLK 176 (187)
T ss_pred HHHhh
Confidence 98876
No 174
>KOG2164|consensus
Probab=98.07 E-value=1.4e-06 Score=88.49 Aligned_cols=50 Identities=24% Similarity=0.569 Sum_probs=44.1
Q ss_pred cceeccccccccccCCCCcEEecCCCcchhhhHhhcccC---CCccCCCCCCCcccCC
Q psy15732 65 ALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIK---DDTITCPFDRQPTPVG 119 (550)
Q Consensus 65 ~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~---~~~~~CP~Cr~~~~~~ 119 (550)
...||||+.... - |+.+.|||.||..||.++|.. .....||.|+..+...
T Consensus 186 ~~~CPICL~~~~---~--p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k 238 (513)
T KOG2164|consen 186 DMQCPICLEPPS---V--PVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK 238 (513)
T ss_pred CCcCCcccCCCC---c--ccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence 789999999999 7 999999999999999999983 2456899999988764
No 175
>KOG0090|consensus
Probab=98.07 E-value=9.4e-06 Score=73.84 Aligned_cols=93 Identities=17% Similarity=0.311 Sum_probs=71.3
Q ss_pred EEEEEeeCCCCCccchhhHHHHHHHHHHHhhccC--cCCCeEEEEecCCCCCCCCCHHHHHHhcC--CCccc--------
Q psy15732 445 MRVVTLGLDSADSADKERLPEALAELTKLIAEKE--LKDAALLLLANKQDIPGCETVESITEAFD--LYKLC-------- 512 (550)
Q Consensus 445 ~~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~--~~~~pili~~NK~Dl~~~~~~~~i~~~~~--l~~~~-------- 512 (550)
...+++++|. .+......++.+.|.+++.+.. ...+||||+.||+|+..+.+.+-|++.|+ ++.+.
T Consensus 109 akaiVFVVDS--a~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~ 186 (238)
T KOG0090|consen 109 AKAIVFVVDS--ATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRS 186 (238)
T ss_pred ceeEEEEEec--cccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 3446677777 5556667778889998887763 45689999999999988888888777664 11111
Q ss_pred ------------------------CCCcEEEEEecccCCCCHHHHHHHHHHH
Q psy15732 513 ------------------------CGRSWHIQACNAQSGEGLHEGLDWLSRQ 540 (550)
Q Consensus 513 ------------------------~~~~~~~~~~SA~~g~gi~e~f~~l~~~ 540 (550)
++..+.|.++||++| ||++.-+||.+.
T Consensus 187 ~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 187 ISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 235788999999999 999999999875
No 176
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.07 E-value=0.00029 Score=74.47 Aligned_cols=52 Identities=23% Similarity=0.369 Sum_probs=40.9
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
.++|++||+||+|+....... . ...+.++++||++|.||++.++||.+.+..
T Consensus 320 ~~~piiiV~NK~DL~~~~~~~------~------~~~~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 320 KDKPVIVVLNKADLTGEIDLE------E------ENGKPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred CCCCcEEEEEhhhccccchhh------h------ccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 468999999999996542221 1 234578999999999999999999998754
No 177
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=1.5e-06 Score=80.95 Aligned_cols=52 Identities=29% Similarity=0.461 Sum_probs=43.2
Q ss_pred CCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
...+.|++|++... . |..++|||.||+.||...|.....-.||.||+.....
T Consensus 213 ~~d~kC~lC~e~~~---~--ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 213 LADYKCFLCLEEPE---V--PSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccccceeeeecccC---C--cccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 35789999999999 8 9999999999999999855543444599999987653
No 178
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.05 E-value=1.5e-05 Score=72.32 Aligned_cols=62 Identities=21% Similarity=0.289 Sum_probs=42.7
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHhc---CCCcc-cCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCETVESITEAF---DLYKL-CCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~~~~i~~~~---~l~~~-~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
.++|++|++||+|+.... .+.+...+ ..... ...+.+.++++||++|+||+++|+||.+...
T Consensus 101 ~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 101 ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence 458999999999996542 22222222 11100 0134678999999999999999999988754
No 179
>KOG0095|consensus
Probab=98.04 E-value=8.3e-06 Score=69.30 Aligned_cols=93 Identities=15% Similarity=0.141 Sum_probs=69.6
Q ss_pred eEEEEEeeCCCC---------------------CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC-CCHHH
Q psy15732 444 EMRVVTLGLDSA---------------------DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC-ETVES 501 (550)
Q Consensus 444 ~~~~~~~~~d~~---------------------D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~-~~~~~ 501 (550)
.+++.+|+..|+ |++=..+|.-.-+||.++-+.. ...+--++||||.|+.+. ..+..
T Consensus 55 kiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~ya-n~kvlkilvgnk~d~~drrevp~q 133 (213)
T KOG0095|consen 55 KIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYA-NNKVLKILVGNKIDLADRREVPQQ 133 (213)
T ss_pred EEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHh-hcceEEEeeccccchhhhhhhhHH
Confidence 466788988887 8888888888888888885443 345667788999999554 23344
Q ss_pred HHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 502 ITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 502 i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
+.+.+. +.....|++|||+..+||+..|..|+..+.
T Consensus 134 igeefs-----~~qdmyfletsakea~nve~lf~~~a~rli 169 (213)
T KOG0095|consen 134 IGEEFS-----EAQDMYFLETSAKEADNVEKLFLDLACRLI 169 (213)
T ss_pred HHHHHH-----HhhhhhhhhhcccchhhHHHHHHHHHHHHH
Confidence 444333 245567899999999999999999988774
No 180
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.04 E-value=1.3e-05 Score=81.64 Aligned_cols=81 Identities=22% Similarity=0.240 Sum_probs=51.0
Q ss_pred EEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEeccc
Q psy15732 446 RVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQ 525 (550)
Q Consensus 446 ~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~ 525 (550)
.++++.+|+.|....+.+..+..+|..+ ...++|+++|+||+|+... .++..... ....++++||+
T Consensus 270 Dlil~VvD~s~~~~~~~~~~~~~~L~~l----~~~~~piIlV~NK~Dl~~~---~~v~~~~~-------~~~~~i~iSAk 335 (351)
T TIGR03156 270 DLLLHVVDASDPDREEQIEAVEKVLEEL----GAEDIPQLLVYNKIDLLDE---PRIERLEE-------GYPEAVFVSAK 335 (351)
T ss_pred CEEEEEEECCCCchHHHHHHHHHHHHHh----ccCCCCEEEEEEeecCCCh---HhHHHHHh-------CCCCEEEEEcc
Confidence 4456666664433333343334444433 2346899999999999643 23322111 11257899999
Q ss_pred CCCCHHHHHHHHHHH
Q psy15732 526 SGEGLHEGLDWLSRQ 540 (550)
Q Consensus 526 ~g~gi~e~f~~l~~~ 540 (550)
+|.||++.++||.+.
T Consensus 336 tg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 336 TGEGLDLLLEAIAER 350 (351)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999999864
No 181
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.04 E-value=5.5e-06 Score=74.64 Aligned_cols=82 Identities=16% Similarity=0.140 Sum_probs=53.8
Q ss_pred EEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEeccc
Q psy15732 446 RVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQ 525 (550)
Q Consensus 446 ~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~ 525 (550)
.++++.+|..+. +++. ..|+..+. .+.|+++++||.|+.. ...+.+.+.+... .-.++++++||+
T Consensus 66 d~il~v~d~~~~---~s~~--~~~~~~~~-----~~~~ii~v~nK~Dl~~-~~~~~~~~~~~~~----~~~~p~~~~Sa~ 130 (158)
T PRK15467 66 DMLIYVHGANDP---ESRL--PAGLLDIG-----VSKRQIAVISKTDMPD-ADVAATRKLLLET----GFEEPIFELNSH 130 (158)
T ss_pred CEEEEEEeCCCc---cccc--CHHHHhcc-----CCCCeEEEEEccccCc-ccHHHHHHHHHHc----CCCCCEEEEECC
Confidence 445566665433 2221 23454431 3579999999999965 3455555544311 112589999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy15732 526 SGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 526 ~g~gi~e~f~~l~~~~~ 542 (550)
+|+||+++|++|++.+.
T Consensus 131 ~g~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 131 DPQSVQQLVDYLASLTK 147 (158)
T ss_pred CccCHHHHHHHHHHhch
Confidence 99999999999988764
No 182
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=97.99 E-value=2.1e-06 Score=58.37 Aligned_cols=41 Identities=32% Similarity=0.749 Sum_probs=33.7
Q ss_pred CCCCCCCCcccccceeecccccCCccccccccccccccccccCCCCcccH
Q psy15732 218 EKPFCSSHPTNIAEFICLEEHCQTSAQYPPLMCFICKDYGRHKTHKHALV 267 (550)
Q Consensus 218 ~~~~C~~H~~~~l~~fC~~~~C~~~~~c~~~iC~~C~~~~~H~~H~~~~l 267 (550)
+...|..|+++.+.+||.+ |. .++|..|...+ |++|.+++|
T Consensus 2 ~~~~C~~H~~~~~~~~C~~--C~------~~~C~~C~~~~-H~~H~~~~i 42 (42)
T PF00643_consen 2 QEPKCPEHPEEPLSLFCED--CN------EPLCSECTVSG-HKGHKIVPI 42 (42)
T ss_dssp SSSB-SSTTTSBEEEEETT--TT------EEEEHHHHHTS-TTTSEEEEC
T ss_pred cCccCccCCccceEEEecC--CC------CccCccCCCCC-CCCCEEeEC
Confidence 3568999999779999988 54 99999999864 999998764
No 183
>PRK15494 era GTPase Era; Provisional
Probab=97.99 E-value=1.1e-05 Score=81.91 Aligned_cols=58 Identities=17% Similarity=0.194 Sum_probs=43.8
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 481 DAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 481 ~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
+.|++||+||+|+.+. ...++.+.+... ...+.++++||++|.||+++|+||++.+..
T Consensus 160 ~~p~IlViNKiDl~~~-~~~~~~~~l~~~----~~~~~i~~iSAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 160 NIVPIFLLNKIDIESK-YLNDIKAFLTEN----HPDSLLFPISALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred CCCEEEEEEhhcCccc-cHHHHHHHHHhc----CCCcEEEEEeccCccCHHHHHHHHHHhCCC
Confidence 3577789999999754 355666655421 223689999999999999999999987654
No 184
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=97.96 E-value=2e-05 Score=81.36 Aligned_cols=97 Identities=23% Similarity=0.131 Sum_probs=59.6
Q ss_pred EEEEEeeCCCCCccchhhHHHHHHHHHHHhhc-cCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEec
Q psy15732 445 MRVVTLGLDSADSADKERLPEALAELTKLIAE-KELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACN 523 (550)
Q Consensus 445 ~~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~-~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~S 523 (550)
..++++.+|..+..+.+.++....|++++... ..+.+.|++||+||+|+.......+..+.+. ..+ .....++++|
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~-~~~--~~~~~Vi~IS 314 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIV-EAL--GWEGPVYLIS 314 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHH-HHh--CCCCCEEEEE
Confidence 34556666654222334555555666655432 3345789999999999964422222222111 001 1123589999
Q ss_pred ccCCCCHHHHHHHHHHHHHHh
Q psy15732 524 AQSGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 524 A~~g~gi~e~f~~l~~~~~~~ 544 (550)
|++|.||++++++|.+.+...
T Consensus 315 A~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 315 AASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CCCCcCHHHHHHHHHHHhhhC
Confidence 999999999999999988654
No 185
>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
Probab=97.95 E-value=4e-06 Score=55.98 Aligned_cols=38 Identities=21% Similarity=0.547 Sum_probs=32.8
Q ss_pred CCCCCcccccceeecccccCCccccccccccccccccccCCCCcccH
Q psy15732 221 FCSSHPTNIAEFICLEEHCQTSAQYPPLMCFICKDYGRHKTHKHALV 267 (550)
Q Consensus 221 ~C~~H~~~~l~~fC~~~~C~~~~~c~~~iC~~C~~~~~H~~H~~~~l 267 (550)
.|+.|+++++.+||.+++ .++|..|...+ |++|.+.++
T Consensus 2 ~C~~H~~~~~~~fC~~~~--------~~iC~~C~~~~-H~~H~~~~i 39 (39)
T cd00021 2 LCDEHGEEPLSLFCETDR--------ALLCVDCDLSV-HSGHRRVPL 39 (39)
T ss_pred CCCccCCcceEEEeCccC--------hhhhhhcChhh-cCCCCEeeC
Confidence 699999889999998844 99999999865 999998764
No 186
>KOG0393|consensus
Probab=97.93 E-value=3.1e-05 Score=70.88 Aligned_cols=85 Identities=14% Similarity=0.189 Sum_probs=59.2
Q ss_pred CccchhhHHHHH-HHHHHHhhccCcCCCeEEEEecCCCCCCCCC-HHHHHHhcCCCccc---------CCCcEEEEEecc
Q psy15732 456 DSADKERLPEAL-AELTKLIAEKELKDAALLLLANKQDIPGCET-VESITEAFDLYKLC---------CGRSWHIQACNA 524 (550)
Q Consensus 456 D~~d~~~~~~~~-~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~-~~~i~~~~~l~~~~---------~~~~~~~~~~SA 524 (550)
+..++++|+++. .|+.++..+- +++|+|+||.|.||.+... .+++.. -++..+. .-....|++|||
T Consensus 85 sv~~p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~DLr~d~~~~~~l~~-~~~~~Vt~~~g~~lA~~iga~~y~EcSa 161 (198)
T KOG0393|consen 85 SVVSPESFENVKSKWIPEIKHHC--PNVPIILVGTKADLRDDPSTLEKLQR-QGLEPVTYEQGLELAKEIGAVKYLECSA 161 (198)
T ss_pred EcCChhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHHhhhCHHHHHHHHh-ccCCcccHHHHHHHHHHhCcceeeeehh
Confidence 578899999865 8888886554 7899999999999974321 111111 0111100 112368999999
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q psy15732 525 QSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 525 ~~g~gi~e~f~~l~~~~~~ 543 (550)
++..||.++|+..+.....
T Consensus 162 ~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 162 LTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred hhhCCcHHHHHHHHHHHhc
Confidence 9999999999999887644
No 187
>KOG0096|consensus
Probab=97.93 E-value=1.1e-05 Score=71.87 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=60.6
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|.+.+-.+.++.+|-+++..- -.++||++.|||.|.+.......-.. .. ..+.+.+++.||++.-|.+..|.
T Consensus 91 dVtsr~t~~n~~rwhrd~~rv--~~NiPiv~cGNKvDi~~r~~k~k~v~-----~~-rkknl~y~~iSaksn~NfekPFl 162 (216)
T KOG0096|consen 91 DVTSRFTYKNVPRWHRDLVRV--RENIPIVLCGNKVDIKARKVKAKPVS-----FH-RKKNLQYYEISAKSNYNFERPFL 162 (216)
T ss_pred eeeehhhhhcchHHHHHHHHH--hcCCCeeeeccceeccccccccccce-----ee-ecccceeEEeecccccccccchH
Confidence 677788888888998888644 36799999999999875531111111 11 26788999999999999999999
Q ss_pred HHHHHHH
Q psy15732 536 WLSRQLI 542 (550)
Q Consensus 536 ~l~~~~~ 542 (550)
||+..+.
T Consensus 163 ~LarKl~ 169 (216)
T KOG0096|consen 163 WLARKLT 169 (216)
T ss_pred HHhhhhc
Confidence 9999874
No 188
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.91 E-value=2.8e-05 Score=70.06 Aligned_cols=55 Identities=24% Similarity=0.192 Sum_probs=39.6
Q ss_pred CeEEEEecCCCCCCCCC----HHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHH
Q psy15732 482 AALLLLANKQDIPGCET----VESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSR 539 (550)
Q Consensus 482 ~pili~~NK~Dl~~~~~----~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~ 539 (550)
.|++|++||+|+.+... ..++.+.+.... ...+.++++||++|+||+++|++|..
T Consensus 105 ~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 105 KRGLVVLTKADLVDEDWLELVEEEIRELLAGTF---LADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred CcEEEEEECccccCHHHHHHHHHHHHHHHHhcC---cCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 49999999999965421 234444443110 13578999999999999999999864
No 189
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=97.91 E-value=1.9e-05 Score=74.38 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=40.9
Q ss_pred CeEEEEecCCCCCCCCCH----HHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 482 AALLLLANKQDIPGCETV----ESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 482 ~pili~~NK~Dl~~~~~~----~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
.|++|++||+|+.+.... +++.+.+.. + ....+.++++||++|+||+++|+||.+.+.
T Consensus 138 ~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~--~-~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 138 KHIIIVQNKIDLVKEEQALENYEQIKKFVKG--T-IAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred CcEEEEEEchhccCHHHHHHHHHHHHHHHhc--c-ccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 479999999999653222 233333321 1 023568999999999999999999988664
No 190
>KOG3883|consensus
Probab=97.90 E-value=3.8e-05 Score=65.82 Aligned_cols=85 Identities=20% Similarity=0.222 Sum_probs=63.4
Q ss_pred EEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCC--CCCCHHHHHHhcCCCcccCCCcEEEEEeccc
Q psy15732 448 VTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIP--GCETVESITEAFDLYKLCCGRSWHIQACNAQ 525 (550)
Q Consensus 448 ~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~--~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~ 525 (550)
..+++++.|..+..+++-.+.|+.. ..+...+||+|+|||+|+. ..++.+-...+.. ...+..++++|.
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk---~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~------rEkvkl~eVta~ 158 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDK---HKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAK------REKVKLWEVTAM 158 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhh---ccccccccEEEEechhhcccchhcCHHHHHHHHh------hhheeEEEEEec
Confidence 4456677666666666667777776 3455789999999999993 3344444444433 556789999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy15732 526 SGEGLHEGLDWLSRQL 541 (550)
Q Consensus 526 ~g~gi~e~f~~l~~~~ 541 (550)
+...+.|.|.+|+..+
T Consensus 159 dR~sL~epf~~l~~rl 174 (198)
T KOG3883|consen 159 DRPSLYEPFTYLASRL 174 (198)
T ss_pred cchhhhhHHHHHHHhc
Confidence 9999999999999987
No 191
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=97.89 E-value=1.6e-05 Score=71.25 Aligned_cols=81 Identities=16% Similarity=0.136 Sum_probs=50.7
Q ss_pred EEEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCH-HHHHHhcCCCcccCCCcEEEEEec
Q psy15732 445 MRVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETV-ESITEAFDLYKLCCGRSWHIQACN 523 (550)
Q Consensus 445 ~~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~-~~i~~~~~l~~~~~~~~~~~~~~S 523 (550)
..++++.+|+.+ .+.. ..|+..+.. .++|++|++||+|+.+.... .+...... ..++.++++|
T Consensus 75 ~d~vi~v~d~~~---~~~~---~~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~------~~~~~~~~iS 138 (158)
T cd01879 75 PDLIVNVVDATN---LERN---LYLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLSE------LLGVPVVPTS 138 (158)
T ss_pred CcEEEEEeeCCc---chhH---HHHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHHH------hhCCCeEEEE
Confidence 345666666643 2332 234444422 25899999999999654221 11211111 1235789999
Q ss_pred ccCCCCHHHHHHHHHHHH
Q psy15732 524 AQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 524 A~~g~gi~e~f~~l~~~~ 541 (550)
|++|.|+.+.|+||...+
T Consensus 139 a~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 139 ARKGEGIDELKDAIAELA 156 (158)
T ss_pred ccCCCCHHHHHHHHHHHh
Confidence 999999999999998764
No 192
>KOG2660|consensus
Probab=97.88 E-value=5.4e-06 Score=79.88 Aligned_cols=72 Identities=19% Similarity=0.476 Sum_probs=57.0
Q ss_pred hccCCcceeccccccccccCCCCcEEe-cCCCcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHHHH
Q psy15732 60 LILELALECRVCEDIFLTQGDKVPRLL-HCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELIEK 138 (550)
Q Consensus 60 ~~~~~~l~C~iC~~~~~~~~~~~P~~l-~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~~ 138 (550)
..+...++|.+|..+|. | |.++ .|.||||++||-..+. ....||.|...+.... ....++....+.+|+-+
T Consensus 10 ~~~n~~itC~LC~GYli---D--ATTI~eCLHTFCkSCivk~l~--~~~~CP~C~i~ih~t~-pl~ni~~DrtlqdiVyK 81 (331)
T KOG2660|consen 10 TELNPHITCRLCGGYLI---D--ATTITECLHTFCKSCIVKYLE--ESKYCPTCDIVIHKTH-PLLNIRSDRTLQDIVYK 81 (331)
T ss_pred hhcccceehhhccceee---c--chhHHHHHHHHHHHHHHHHHH--HhccCCccceeccCcc-ccccCCcchHHHHHHHH
Confidence 34567899999999999 9 9887 8999999999999988 4667999998775431 12246778888888766
Q ss_pred H
Q psy15732 139 I 139 (550)
Q Consensus 139 ~ 139 (550)
+
T Consensus 82 L 82 (331)
T KOG2660|consen 82 L 82 (331)
T ss_pred H
Confidence 5
No 193
>PRK11058 GTPase HflX; Provisional
Probab=97.86 E-value=5.6e-05 Score=79.00 Aligned_cols=86 Identities=20% Similarity=0.169 Sum_probs=54.0
Q ss_pred EEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEeccc
Q psy15732 446 RVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQ 525 (550)
Q Consensus 446 ~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~ 525 (550)
.++++.+|..|....+.+..+..+|..+. ..++|+++|+||+|+..... ..+.. .. . ..+ .++.+||+
T Consensus 278 DlIL~VvDaS~~~~~e~l~~v~~iL~el~----~~~~pvIiV~NKiDL~~~~~-~~~~~-~~-~----~~~-~~v~ISAk 345 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEAVNTVLEEID----AHEIPTLLVMNKIDMLDDFE-PRIDR-DE-E----NKP-IRVWLSAQ 345 (426)
T ss_pred CEEEEEEeCCCccHHHHHHHHHHHHHHhc----cCCCCEEEEEEcccCCCchh-HHHHH-Hh-c----CCC-ceEEEeCC
Confidence 45666666654433344444556666552 24689999999999954311 11111 11 0 111 24779999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy15732 526 SGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 526 ~g~gi~e~f~~l~~~~~~ 543 (550)
+|+||+++|+||.+.+..
T Consensus 346 tG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 346 TGAGIPLLFQALTERLSG 363 (426)
T ss_pred CCCCHHHHHHHHHHHhhh
Confidence 999999999999998853
No 194
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=97.84 E-value=5.5e-05 Score=69.86 Aligned_cols=63 Identities=25% Similarity=0.266 Sum_probs=45.9
Q ss_pred CCCeEEEEecCCCCCCCCC----HHHHHHhcCCCcc--------cCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCET----VESITEAFDLYKL--------CCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~----~~~i~~~~~l~~~--------~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
.++|++|++||+|+..... ..++.+.++.... .....+.++++||++|.||+++|+||...+.
T Consensus 113 ~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 113 GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 4689999999999975322 3344454543221 0134688999999999999999999998763
No 195
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=97.83 E-value=5.9e-05 Score=82.22 Aligned_cols=56 Identities=23% Similarity=0.394 Sum_probs=42.1
Q ss_pred CCeEEEEecCCCCCCCCC---HHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 481 DAALLLLANKQDIPGCET---VESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 481 ~~pili~~NK~Dl~~~~~---~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
++|+++++||+|+++... .+++.+.+++ ....++++||++|.||+++|+||.+.+.
T Consensus 122 ~ipiIiViNKiDl~~~~~~~~~~el~~~lg~------~~~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 122 DLEIIPVINKIDLPSADPERVKKEIEEVIGL------DASEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred CCCEEEEEECcCCCccCHHHHHHHHHHHhCC------CcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 589999999999976432 1344444442 1235899999999999999999998774
No 196
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.83 E-value=3.2e-05 Score=72.76 Aligned_cols=92 Identities=17% Similarity=0.267 Sum_probs=65.0
Q ss_pred EEEEeeCCCCCccchhhHHHHHHHHHHHhhccCc--CCCeEEEEecCCCCCCCCCHHHHHHhcCC--Cccc---------
Q psy15732 446 RVVTLGLDSADSADKERLPEALAELTKLIAEKEL--KDAALLLLANKQDIPGCETVESITEAFDL--YKLC--------- 512 (550)
Q Consensus 446 ~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~--~~~pili~~NK~Dl~~~~~~~~i~~~~~l--~~~~--------- 512 (550)
..+++.+|..+.. .++.++..||..++.+... .++|+||++||+|+..+.+.+.+.+.++. ..+.
T Consensus 74 ~~vV~VvD~~~~~--~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~ 151 (203)
T cd04105 74 KGIVFVVDSATFQ--KNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSS 151 (203)
T ss_pred CEEEEEEECccch--hHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4566666665432 6788888999888765432 57999999999999877665555544431 0000
Q ss_pred -----------------------CCCcEEEEEecccCCC-CHHHHHHHHHH
Q psy15732 513 -----------------------CGRSWHIQACNAQSGE-GLHEGLDWLSR 539 (550)
Q Consensus 513 -----------------------~~~~~~~~~~SA~~g~-gi~e~f~~l~~ 539 (550)
...++.|.++||+.+. ||+..-+||.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 152 LDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccccccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 1246889999999887 69999999975
No 197
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.83 E-value=1.2e-05 Score=61.78 Aligned_cols=45 Identities=27% Similarity=0.685 Sum_probs=32.9
Q ss_pred eecccccccccc-------CCCCcEEe-cCCCcchhhhHhhcccCCCccCCCCCC
Q psy15732 67 ECRVCEDIFLTQ-------GDKVPRLL-HCGHTVCLACLLRLPIKDDTITCPFDR 113 (550)
Q Consensus 67 ~C~iC~~~~~~~-------~~~~P~~l-~CgH~fC~~Cl~~~~~~~~~~~CP~Cr 113 (550)
.|+||++.|... ++..|+.+ +|||.|...||.+|+.. ...||.||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~--~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ--NNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT--SSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc--CCcCCCCC
Confidence 499999999421 12235554 89999999999999984 44899997
No 198
>KOG4628|consensus
Probab=97.83 E-value=9.3e-06 Score=80.16 Aligned_cols=51 Identities=18% Similarity=0.447 Sum_probs=42.7
Q ss_pred ceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 66 LECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 66 l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
..|.||++.|...+. =+.|||+|.|...|+..|+.+. ...||+|++....+
T Consensus 230 ~~CaIClEdY~~Gdk--lRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDK--LRILPCSHKFHVNCIDPWLTQT-RTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCe--eeEecCCCchhhccchhhHhhc-CccCCCCCCcCCCC
Confidence 499999999997634 5778999999999999999864 34599999977654
No 199
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.83 E-value=3.6e-05 Score=68.65 Aligned_cols=53 Identities=21% Similarity=0.189 Sum_probs=37.9
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHH
Q psy15732 481 DAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 481 ~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
++|+++++||+|+............++ + -.++++||++|.||+++|+||.+.+
T Consensus 105 ~~piiiv~nK~D~~~~~~~~~~~~~~~---~-----~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 105 KKPVILVVNKVDNIKEEDEAAEFYSLG---F-----GEPIPISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred CCCEEEEEECcccCChHHHHHHHHhcC---C-----CCeEEEecccCCCHHHHHHHHHhhC
Confidence 489999999999976422211111111 1 1578999999999999999998753
No 200
>KOG0978|consensus
Probab=97.81 E-value=3.9e-06 Score=89.67 Aligned_cols=56 Identities=21% Similarity=0.452 Sum_probs=47.3
Q ss_pred hhhccCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 58 RILILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 58 ~~~~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
.+..+...|+||+|..-+. + .++..|||.||..|+...... +...||.|...+...
T Consensus 636 Elk~yK~~LkCs~Cn~R~K---d--~vI~kC~H~FC~~Cvq~r~et-RqRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 636 ELKEYKELLKCSVCNTRWK---D--AVITKCGHVFCEECVQTRYET-RQRKCPKCNAAFGAN 691 (698)
T ss_pred HHHHHHhceeCCCccCchh---h--HHHHhcchHHHHHHHHHHHHH-hcCCCCCCCCCCCcc
Confidence 3455778899999999999 8 888899999999999998763 456799999998754
No 201
>KOG4159|consensus
Probab=97.79 E-value=9.6e-06 Score=82.32 Aligned_cols=51 Identities=31% Similarity=0.660 Sum_probs=45.1
Q ss_pred ccCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 61 ILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 61 ~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
.+..++.|.||...|. + |+++||||+||..||.+.+. ....||.||..+..
T Consensus 80 ~~~sef~c~vc~~~l~---~--pv~tpcghs~c~~Cl~r~ld--~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 80 EIRSEFECCVCSRALY---P--PVVTPCGHSFCLECLDRSLD--QETECPLCRDELVE 130 (398)
T ss_pred cccchhhhhhhHhhcC---C--CccccccccccHHHHHHHhc--cCCCCccccccccc
Confidence 3478999999999999 9 99999999999999999776 56679999998864
No 202
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=97.79 E-value=5.3e-05 Score=80.08 Aligned_cols=62 Identities=24% Similarity=0.211 Sum_probs=43.7
Q ss_pred CCCeEEEEecCCCCC-CCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIP-GCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 480 ~~~pili~~NK~Dl~-~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
.++|++|++||+|+. +....+++.+.+. ..+..-..+.++++||++|.||+++|+||...+.
T Consensus 282 ~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 282 AGKALVIVVNKWDLVKDEKTREEFKKELR-RKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred cCCcEEEEEECcccCCCHHHHHHHHHHHH-HhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 358999999999996 3323344444433 1111123468999999999999999999988654
No 203
>KOG4252|consensus
Probab=97.79 E-value=1.9e-05 Score=69.39 Aligned_cols=80 Identities=11% Similarity=0.118 Sum_probs=62.7
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
..||+.+|+...+|-+++... ...+|.++|-||+||.. .+..++++..+. .....++.+|++..-||.++
T Consensus 101 STTDr~SFea~~~w~~kv~~e--~~~IPtV~vqNKIDlveds~~~~~evE~lak------~l~~RlyRtSvked~NV~~v 172 (246)
T KOG4252|consen 101 STTDRYSFEATLEWYNKVQKE--TERIPTVFVQNKIDLVEDSQMDKGEVEGLAK------KLHKRLYRTSVKEDFNVMHV 172 (246)
T ss_pred ecccHHHHHHHHHHHHHHHHH--hccCCeEEeeccchhhHhhhcchHHHHHHHH------HhhhhhhhhhhhhhhhhHHH
Confidence 367889999999998888533 47899999999999943 466666665554 22346677999999999999
Q ss_pred HHHHHHHHHH
Q psy15732 534 LDWLSRQLIA 543 (550)
Q Consensus 534 f~~l~~~~~~ 543 (550)
|.+|++.+..
T Consensus 173 F~YLaeK~~q 182 (246)
T KOG4252|consen 173 FAYLAEKLTQ 182 (246)
T ss_pred HHHHHHHHHH
Confidence 9999998743
No 204
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.78 E-value=0.00012 Score=68.36 Aligned_cols=68 Identities=19% Similarity=0.154 Sum_probs=44.7
Q ss_pred CCCeEEEEecCCCCCCCCC---HHHHHHhcC-CCcccCCCcEEEEEecccCCCCHH------HHHHHHHHHHHHhcCC
Q psy15732 480 KDAALLLLANKQDIPGCET---VESITEAFD-LYKLCCGRSWHIQACNAQSGEGLH------EGLDWLSRQLIAAGVN 547 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~---~~~i~~~~~-l~~~~~~~~~~~~~~SA~~g~gi~------e~f~~l~~~~~~~~~~ 547 (550)
.++|++|++||+|+..... .+++.+.+. +.......++.++++||++|.|+. +.+.||++.+....|.
T Consensus 116 ~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (194)
T cd01891 116 LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVPA 193 (194)
T ss_pred cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhccccccccccchhhHHHHHHHHHhcCCC
Confidence 3689999999999965432 233333331 111111346789999999999983 5678888888766553
No 205
>PRK03003 GTP-binding protein Der; Reviewed
Probab=97.77 E-value=7.6e-05 Score=79.64 Aligned_cols=84 Identities=18% Similarity=0.146 Sum_probs=53.4
Q ss_pred EEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCH----HHHHHhcCCCcccCCCcEEEEEe
Q psy15732 447 VVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETV----ESITEAFDLYKLCCGRSWHIQAC 522 (550)
Q Consensus 447 ~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~----~~i~~~~~l~~~~~~~~~~~~~~ 522 (550)
++++.+|+. +..+++.. .++..+.. .++|++||+||+||.+.... .++.+.+.. .....++++
T Consensus 296 ~vilV~Da~---~~~s~~~~-~~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~-----~~~~~~~~~ 362 (472)
T PRK03003 296 VAVVLIDAS---EPISEQDQ-RVLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQ-----VPWAPRVNI 362 (472)
T ss_pred EEEEEEeCC---CCCCHHHH-HHHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhccc-----CCCCCEEEE
Confidence 455555554 33444433 34444432 46899999999999653222 223333331 123468899
Q ss_pred cccCCCCHHHHHHHHHHHHHH
Q psy15732 523 NAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 523 SA~~g~gi~e~f~~l~~~~~~ 543 (550)
||++|.||+++|+.|++.+.+
T Consensus 363 SAk~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 363 SAKTGRAVDKLVPALETALES 383 (472)
T ss_pred ECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999987743
No 206
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=97.77 E-value=6.3e-05 Score=70.11 Aligned_cols=61 Identities=23% Similarity=0.211 Sum_probs=42.7
Q ss_pred CCeEEEEecCCCCCCCCC----HHHHHHhcC--CCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 481 DAALLLLANKQDIPGCET----VESITEAFD--LYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 481 ~~pili~~NK~Dl~~~~~----~~~i~~~~~--l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
++|++|++||+|+..... .+++.+.+. +..+ ....+.++++||++|+||++.++||..++.
T Consensus 120 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 120 CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT-RFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc-CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 579999999999964322 233333322 1011 124678999999999999999999988764
No 207
>PRK03003 GTP-binding protein Der; Reviewed
Probab=97.76 E-value=7.6e-05 Score=79.61 Aligned_cols=56 Identities=27% Similarity=0.312 Sum_probs=39.5
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
.++|+++|+||+|+..... +..+...+ .+ . ..+++||++|.||+++|+||++.+.+
T Consensus 145 ~~~piilV~NK~Dl~~~~~--~~~~~~~~-g~--~---~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 145 SGKPVILAANKVDDERGEA--DAAALWSL-GL--G---EPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred cCCCEEEEEECccCCccch--hhHHHHhc-CC--C---CeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 4689999999999965321 22222221 11 1 23689999999999999999998754
No 208
>KOG0311|consensus
Probab=97.75 E-value=4.6e-06 Score=80.73 Aligned_cols=54 Identities=17% Similarity=0.485 Sum_probs=44.9
Q ss_pred hccCCcceeccccccccccCCCCcEEe-cCCCcchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 60 LILELALECRVCEDIFLTQGDKVPRLL-HCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 60 ~~~~~~l~C~iC~~~~~~~~~~~P~~l-~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
..+...+.|+||+.+++ . .++. .|+|.||..||...+.. +...||.||+.+...
T Consensus 38 ~~~~~~v~c~icl~llk---~--tmttkeClhrfc~~ci~~a~r~-gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 38 AMFDIQVICPICLSLLK---K--TMTTKECLHRFCFDCIWKALRS-GNNECPTCRKKLVSK 92 (381)
T ss_pred HHhhhhhccHHHHHHHH---h--hcccHHHHHHHHHHHHHHHHHh-cCCCCchHHhhcccc
Confidence 34677899999999999 7 7777 89999999999887764 445799999988654
No 209
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.71 E-value=0.00011 Score=66.48 Aligned_cols=59 Identities=22% Similarity=0.245 Sum_probs=41.0
Q ss_pred CCCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSR 539 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~ 539 (550)
.+.|++|++||+|+.+. ...+.+.+.+. ..+.......++++||++|.||+++|+++.+
T Consensus 112 ~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 112 EGKALVIVVNKWDLVEKDSKTMKEFKKEIR-RKLPFLDYAPIVFISALTGQGVDKLFDAIDE 172 (174)
T ss_pred cCCCEEEEEeccccCCccHHHHHHHHHHHH-hhcccccCCceEEEeccCCCCHHHHHHHHHH
Confidence 35899999999999655 33343333332 1111112457999999999999999999975
No 210
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=2e-05 Score=74.50 Aligned_cols=52 Identities=27% Similarity=0.651 Sum_probs=42.5
Q ss_pred CcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
....|.||+..|... |+ -+.|||.|.|...|+.+|+.+ ....||+||++++.
T Consensus 322 ~GveCaICms~fiK~-d~-~~vlPC~H~FH~~Cv~kW~~~-y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKN-DR-LRVLPCDHRFHVGCVDKWLLG-YSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhccc-ce-EEEeccCceechhHHHHHHhh-hcccCCccCCCCCC
Confidence 357899999999844 42 567799999999999999874 56689999998753
No 211
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=97.68 E-value=7.5e-05 Score=73.64 Aligned_cols=59 Identities=17% Similarity=0.047 Sum_probs=40.5
Q ss_pred CCCeEEEEecCCCCCCCCCH-HHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCETV-ESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~~-~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
.+.|+++|+||+|+...... +.+.+...... ...++++||++|.||++.++||.+.+..
T Consensus 106 ~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~-----~~~v~~iSA~~g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 106 LKRPVVLTRNKLDNKFKDKLLPLIDKYAILED-----FKDIVPISALTGDNTSFLAAFIEVHLPE 165 (270)
T ss_pred cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcC-----CCceEEEecCCCCCHHHHHHHHHHhCCC
Confidence 35899999999999532111 11222222111 1278999999999999999999987743
No 212
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=97.65 E-value=0.00015 Score=68.96 Aligned_cols=87 Identities=23% Similarity=0.190 Sum_probs=54.5
Q ss_pred CccchhhHHHHH-HHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHH-HHHhc----------CCCcccCCCcEEEEEec
Q psy15732 456 DSADKERLPEAL-AELTKLIAEKELKDAALLLLANKQDIPGCETVES-ITEAF----------DLYKLCCGRSWHIQACN 523 (550)
Q Consensus 456 D~~d~~~~~~~~-~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~-i~~~~----------~l~~~~~~~~~~~~~~S 523 (550)
|.++..++.+.. .|+..+... ...++|+++++||+||........ +...+ ............++++|
T Consensus 86 d~~~~~~~~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 86 DSTLRESSDELTEEWLEELREL-APDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred ecccchhhhHHHHHHHHHHHHh-CCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 777755555555 555555433 335699999999999976532211 11110 00000011233489999
Q ss_pred cc--CCCCHHHHHHHHHHHHHH
Q psy15732 524 AQ--SGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 524 A~--~g~gi~e~f~~l~~~~~~ 543 (550)
|+ ++.||+++|.+++..+..
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHH
Confidence 99 999999999999998753
No 213
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.65 E-value=5.5e-05 Score=58.63 Aligned_cols=55 Identities=27% Similarity=0.547 Sum_probs=41.7
Q ss_pred Ccceecccccccccc-------CCCCcEEe-cCCCcchhhhHhhcccCC-CccCCCCCCCcccC
Q psy15732 64 LALECRVCEDIFLTQ-------GDKVPRLL-HCGHTVCLACLLRLPIKD-DTITCPFDRQPTPV 118 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~-------~~~~P~~l-~CgH~fC~~Cl~~~~~~~-~~~~CP~Cr~~~~~ 118 (550)
++-.|+||...|... |+..|..+ .|+|.|...||.+|++.+ ..-.||.||++...
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 355788888777731 34557777 899999999999999852 35689999998653
No 214
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=97.64 E-value=0.00011 Score=65.22 Aligned_cols=60 Identities=28% Similarity=0.235 Sum_probs=42.7
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQ 540 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~ 540 (550)
.++|++|++||.|+.......+.......... ....+.++++||++|.|+++.++||...
T Consensus 103 ~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 103 RGKPVLLVLNKIDLLPEEEEEELLELRLLILL-LLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred cCCeEEEEEEccccCChhhHHHHHHHHHhhcc-cccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 46899999999999665433333210111111 2567789999999999999999999875
No 215
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.64 E-value=8.6e-05 Score=66.16 Aligned_cols=51 Identities=25% Similarity=0.264 Sum_probs=40.0
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
.+.|+++++||+|+...... .. ......++++||++|.|++++++||.+.+
T Consensus 106 ~~~~vi~v~nK~D~~~~~~~------~~-----~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 106 ADKPIIVVLNKSDLLPDSEL------LS-----LLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred cCCCEEEEEEchhcCCcccc------cc-----ccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 46899999999999654322 11 13456889999999999999999998765
No 216
>KOG1489|consensus
Probab=97.62 E-value=0.00014 Score=70.36 Aligned_cols=84 Identities=31% Similarity=0.395 Sum_probs=56.8
Q ss_pred EEEEeeCCCC---CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCC-CH-HHHHHhcCCCcccCCCcEEEE
Q psy15732 446 RVVTLGLDSA---DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCE-TV-ESITEAFDLYKLCCGRSWHIQ 520 (550)
Q Consensus 446 ~~~~~~~d~~---D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~-~~-~~i~~~~~l~~~~~~~~~~~~ 520 (550)
+++.+++|-+ +.+--+.++-...+|+.. +..+.+.|.|||+||+|++.+. +. .++...+.- -.++
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~y--ek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~--------~~V~ 345 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELY--EKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQN--------PHVV 345 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHH--hhhhccCceEEEEeccCchhHHHHHHHHHHHHcCC--------CcEE
Confidence 4455555554 334446666666666654 3456788999999999996432 22 455555541 1689
Q ss_pred EecccCCCCHHHHHHHHHH
Q psy15732 521 ACNAQSGEGLHEGLDWLSR 539 (550)
Q Consensus 521 ~~SA~~g~gi~e~f~~l~~ 539 (550)
++||++|+|+.+.++-|..
T Consensus 346 pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 346 PVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred EeeeccccchHHHHHHHhh
Confidence 9999999999999887754
No 217
>PRK05433 GTP-binding protein LepA; Provisional
Probab=97.61 E-value=0.00021 Score=78.02 Aligned_cols=56 Identities=20% Similarity=0.382 Sum_probs=42.6
Q ss_pred CCeEEEEecCCCCCCCCC---HHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 481 DAALLLLANKQDIPGCET---VESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 481 ~~pili~~NK~Dl~~~~~---~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
++|+++++||+|++++.. .+++.+.+++ ..+.++++||++|.||+++|+||...+.
T Consensus 126 ~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~------~~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 126 DLEIIPVLNKIDLPAADPERVKQEIEDVIGI------DASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred CCCEEEEEECCCCCcccHHHHHHHHHHHhCC------CcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 589999999999976432 2344444442 2346899999999999999999998774
No 218
>KOG2879|consensus
Probab=97.61 E-value=4.7e-05 Score=71.34 Aligned_cols=51 Identities=27% Similarity=0.603 Sum_probs=44.0
Q ss_pred cCCcceeccccccccccCCCCcEEe-cCCCcchhhhHhhcccCCCccCCCCCCCccc
Q psy15732 62 LELALECRVCEDIFLTQGDKVPRLL-HCGHTVCLACLLRLPIKDDTITCPFDRQPTP 117 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~~~P~~l-~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~ 117 (550)
.+...+|++|.+.-. . |.+. +|||.||..|+.....-...+.||.|.....
T Consensus 236 ~t~~~~C~~Cg~~Pt---i--P~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPT---I--PHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCC---C--CeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 346789999999999 8 9888 6999999999988766556789999998876
No 219
>smart00336 BBOX B-Box-type zinc finger.
Probab=97.60 E-value=3.9e-05 Score=52.08 Aligned_cols=40 Identities=40% Similarity=0.855 Sum_probs=33.5
Q ss_pred CCCCCCCcccccceeecccccCCccccccccccccccccccCCCCcccH
Q psy15732 219 KPFCSSHPTNIAEFICLEEHCQTSAQYPPLMCFICKDYGRHKTHKHALV 267 (550)
Q Consensus 219 ~~~C~~H~~~~l~~fC~~~~C~~~~~c~~~iC~~C~~~~~H~~H~~~~l 267 (550)
...|+.|..+++.+||.+ |. .+||..|... .|++|.+.++
T Consensus 3 ~~~C~~h~~~~~~~~C~~--c~------~~iC~~C~~~-~H~~H~~~~l 42 (42)
T smart00336 3 PPKCDSHGDEPAEFFCEE--CG------ALLCRTCDEA-EHRGHTVVLL 42 (42)
T ss_pred CCcCCCCCCCceEEECCC--CC------cccccccChh-hcCCCceecC
Confidence 467999996699999988 43 9999999985 8999988653
No 220
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.58 E-value=0.00011 Score=79.65 Aligned_cols=85 Identities=20% Similarity=0.344 Sum_probs=54.0
Q ss_pred EEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCccc---CCCcEEEEEec
Q psy15732 447 VVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLC---CGRSWHIQACN 523 (550)
Q Consensus 447 ~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~---~~~~~~~~~~S 523 (550)
++++.+|+.|...+.+++ .+... ...++|++|++||+|+++. +.+++.+.+....+. -...+.++++|
T Consensus 161 iaILVVda~dgv~~qT~e----~i~~~----~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iS 231 (587)
T TIGR00487 161 IVVLVVAADDGVMPQTIE----AISHA----KAANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVS 231 (587)
T ss_pred EEEEEEECCCCCCHhHHH----HHHHH----HHcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEE
Confidence 355555555544444443 23222 1246899999999999764 455665554321110 02246799999
Q ss_pred ccCCCCHHHHHHHHHHH
Q psy15732 524 AQSGEGLHEGLDWLSRQ 540 (550)
Q Consensus 524 A~~g~gi~e~f~~l~~~ 540 (550)
|++|+||+++|+||...
T Consensus 232 AktGeGI~eLl~~I~~~ 248 (587)
T TIGR00487 232 ALTGDGIDELLDMILLQ 248 (587)
T ss_pred CCCCCChHHHHHhhhhh
Confidence 99999999999999753
No 221
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.57 E-value=6.3e-05 Score=71.69 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=34.5
Q ss_pred CCeEEEEecCCCCCCC-CC---HHHHHHh----cCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 481 DAALLLLANKQDIPGC-ET---VESITEA----FDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 481 ~~pili~~NK~Dl~~~-~~---~~~i~~~----~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
..|++|++||+|+..+ .+ .+++.+. +....+ ..+.+.++++||++|+||++.
T Consensus 137 ~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~-~~~~~~ii~iSA~tg~gi~~~ 196 (219)
T cd01883 137 VKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGY-NPKDVPFIPISGLTGDNLIEK 196 (219)
T ss_pred CCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCC-CcCCceEEEeecCcCCCCCcC
Confidence 3689999999999743 12 2333332 222222 245789999999999999843
No 222
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=4.5e-05 Score=74.09 Aligned_cols=56 Identities=30% Similarity=0.624 Sum_probs=43.1
Q ss_pred CCcceeccccccccccC--------CCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCCC
Q psy15732 63 ELALECRVCEDIFLTQG--------DKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGY 120 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~--------~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~ 120 (550)
..+-.|.||++.+-..+ +..|+.|||||.+...|+..|.++ .-+||.||.++.-..
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER--qQTCPICr~p~ifd~ 348 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER--QQTCPICRRPVIFDQ 348 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh--ccCCCcccCcccccc
Confidence 35679999999843211 234799999999999999999984 456999999965443
No 223
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.00027 Score=73.41 Aligned_cols=87 Identities=17% Similarity=0.298 Sum_probs=60.0
Q ss_pred EEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCccc---CCCcEEEEEe
Q psy15732 446 RVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLC---CGRSWHIQAC 522 (550)
Q Consensus 446 ~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~---~~~~~~~~~~ 522 (550)
.+++++.+..|.--+.+.+. ++.+ ...++||+|++||+|++++ +++.+...+.-+.+. =++...++++
T Consensus 80 DIaILVVa~dDGv~pQTiEA----I~ha----k~a~vP~iVAiNKiDk~~~-np~~v~~el~~~gl~~E~~gg~v~~Vpv 150 (509)
T COG0532 80 DIAILVVAADDGVMPQTIEA----INHA----KAAGVPIVVAINKIDKPEA-NPDKVKQELQEYGLVPEEWGGDVIFVPV 150 (509)
T ss_pred cEEEEEEEccCCcchhHHHH----HHHH----HHCCCCEEEEEecccCCCC-CHHHHHHHHHHcCCCHhhcCCceEEEEe
Confidence 45667777767666655532 3322 2356999999999999855 555555544322221 1567999999
Q ss_pred cccCCCCHHHHHHHHHHHH
Q psy15732 523 NAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 523 SA~~g~gi~e~f~~l~~~~ 541 (550)
||+||+||++.+..|+-..
T Consensus 151 SA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 151 SAKTGEGIDELLELILLLA 169 (509)
T ss_pred eccCCCCHHHHHHHHHHHH
Confidence 9999999999999886644
No 224
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.56 E-value=0.00016 Score=67.31 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=41.0
Q ss_pred CCCeEEEEecCCCCCC-CCCHHHHHHhc---CCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPG-CETVESITEAF---DLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~-~~~~~~i~~~~---~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
.+.|+++|+||+|+.. ......+..+. ..... .-....++.+||++|.||++++++|.+.+.
T Consensus 60 ~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 60 GNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGL-GLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhc-CCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4589999999999853 33333333322 10001 011235899999999999999999998764
No 225
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.52 E-value=0.0002 Score=79.07 Aligned_cols=86 Identities=15% Similarity=0.227 Sum_probs=55.9
Q ss_pred EEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcc-cC--CCcEEEEEec
Q psy15732 447 VVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKL-CC--GRSWHIQACN 523 (550)
Q Consensus 447 ~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~-~~--~~~~~~~~~S 523 (550)
++++.+|+.|...+.+++.+ ..+ ...++|++|++||+|+++. +.+++.+.+....+ .. ...+.++++|
T Consensus 321 iaILVVDA~dGv~~QT~E~I----~~~----k~~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VS 391 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEAI----NYI----QAANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPIS 391 (742)
T ss_pred EEEEEEECcCCCChhhHHHH----HHH----HhcCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEEE
Confidence 45555666555445555433 222 1246899999999999764 44555554432111 00 2347899999
Q ss_pred ccCCCCHHHHHHHHHHHH
Q psy15732 524 AQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 524 A~~g~gi~e~f~~l~~~~ 541 (550)
|++|.||+++|+||....
T Consensus 392 AktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 392 ASQGTNIDKLLETILLLA 409 (742)
T ss_pred CCCCCCHHHHHHhhhhhh
Confidence 999999999999998754
No 226
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=97.51 E-value=0.00019 Score=67.33 Aligned_cols=52 Identities=12% Similarity=0.079 Sum_probs=41.9
Q ss_pred eEEEEEeeCCCC---------------------CccchhhHHHHHHHHHHHhhcc------------------CcCCCeE
Q psy15732 444 EMRVVTLGLDSA---------------------DSADKERLPEALAELTKLIAEK------------------ELKDAAL 484 (550)
Q Consensus 444 ~~~~~~~~~d~~---------------------D~~d~~~~~~~~~~l~~~~~~~------------------~~~~~pi 484 (550)
.+.+.+|++.|. |.++.++|++...|+.++.... ...++||
T Consensus 53 ~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi 132 (202)
T cd04102 53 TFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPL 132 (202)
T ss_pred EEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceE
Confidence 456778888776 9999999999999999986531 1246999
Q ss_pred EEEecCCCCCC
Q psy15732 485 LLLANKQDIPG 495 (550)
Q Consensus 485 li~~NK~Dl~~ 495 (550)
+|||||.||..
T Consensus 133 ilVGnK~Dl~~ 143 (202)
T cd04102 133 LVIGTKLDQIP 143 (202)
T ss_pred EEEEECccchh
Confidence 99999999954
No 227
>PRK12289 GTPase RsgA; Reviewed
Probab=97.50 E-value=0.00018 Score=73.12 Aligned_cols=83 Identities=19% Similarity=0.201 Sum_probs=50.3
Q ss_pred EEEEEeeCCCCCcc-chhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEec
Q psy15732 445 MRVVTLGLDSADSA-DKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACN 523 (550)
Q Consensus 445 ~~~~~~~~d~~D~~-d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~S 523 (550)
+..+++++|..|.. +...+ ..||..+ ...++|++||+||+||..........+.+. ..++.++.+|
T Consensus 90 vD~vLlV~d~~~p~~~~~~L---dR~L~~a----~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~------~~g~~v~~iS 156 (352)
T PRK12289 90 ADQILLVFALAEPPLDPWQL---SRFLVKA----ESTGLEIVLCLNKADLVSPTEQQQWQDRLQ------QWGYQPLFIS 156 (352)
T ss_pred CCEEEEEEECCCCCCCHHHH---HHHHHHH----HHCCCCEEEEEEchhcCChHHHHHHHHHHH------hcCCeEEEEE
Confidence 33455555554322 22222 3455433 124689999999999953211122222222 2345789999
Q ss_pred ccCCCCHHHHHHHHHHH
Q psy15732 524 AQSGEGLHEGLDWLSRQ 540 (550)
Q Consensus 524 A~~g~gi~e~f~~l~~~ 540 (550)
|++|.||++++++|...
T Consensus 157 A~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 157 VETGIGLEALLEQLRNK 173 (352)
T ss_pred cCCCCCHHHHhhhhccc
Confidence 99999999999999754
No 228
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.47 E-value=5.4e-05 Score=67.09 Aligned_cols=47 Identities=23% Similarity=0.537 Sum_probs=40.9
Q ss_pred cceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 65 ALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 65 ~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
.+.|.||.+.|. . |+...|||.||..|..+-.. ....|-+|...+.-
T Consensus 196 PF~C~iCKkdy~---s--pvvt~CGH~FC~~Cai~~y~--kg~~C~~Cgk~t~G 242 (259)
T COG5152 196 PFLCGICKKDYE---S--PVVTECGHSFCSLCAIRKYQ--KGDECGVCGKATYG 242 (259)
T ss_pred ceeehhchhhcc---c--hhhhhcchhHHHHHHHHHhc--cCCcceecchhhcc
Confidence 478999999999 8 99999999999999988776 44569999988754
No 229
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=97.46 E-value=8.7e-05 Score=80.92 Aligned_cols=52 Identities=17% Similarity=0.242 Sum_probs=39.6
Q ss_pred CCeEEEEecCCCCCCCC----CHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHH
Q psy15732 481 DAALLLLANKQDIPGCE----TVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 481 ~~pili~~NK~Dl~~~~----~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
++|++|++||+|+.+.. ..+.+.+.++ ..++++||++|+||+++|+||.+..
T Consensus 99 ~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg---------~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 99 GIPMILALNLVDEAEKKGIRIDEEKLEERLG---------VPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred CCCEEEEEehhHHHHhCCChhhHHHHHHHcC---------CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999985332 2233334333 4789999999999999999998753
No 230
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.45 E-value=6.5e-05 Score=70.93 Aligned_cols=57 Identities=30% Similarity=0.415 Sum_probs=42.0
Q ss_pred CCeEEEEecCCCCCCCC--CHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHH
Q psy15732 481 DAALLLLANKQDIPGCE--TVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 481 ~~pili~~NK~Dl~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
+.|.+|++||+|+.+.. ...++.+.+. .+ ...+.++++||++|.||+++|+||.+..
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~--~~--~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAK--KI--NPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHH--Hh--CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 46789999999996542 2344444433 11 2356899999999999999999998754
No 231
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.45 E-value=0.00018 Score=80.19 Aligned_cols=85 Identities=21% Similarity=0.338 Sum_probs=53.4
Q ss_pred EEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcc-cC--CCcEEEEEec
Q psy15732 447 VVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKL-CC--GRSWHIQACN 523 (550)
Q Consensus 447 ~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~-~~--~~~~~~~~~S 523 (550)
++++.+|+.|...+.+++. +..+ ...++|++|++||+|+++. +.+.+...+....+ .. ...+.++++|
T Consensus 363 iaILVVdAddGv~~qT~e~----i~~a----~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvS 433 (787)
T PRK05306 363 IVVLVVAADDGVMPQTIEA----INHA----KAAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVS 433 (787)
T ss_pred EEEEEEECCCCCCHhHHHH----HHHH----HhcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEe
Confidence 4555666555444444432 2222 2246899999999999764 44444443321111 00 2347899999
Q ss_pred ccCCCCHHHHHHHHHHH
Q psy15732 524 AQSGEGLHEGLDWLSRQ 540 (550)
Q Consensus 524 A~~g~gi~e~f~~l~~~ 540 (550)
|++|.||+++|+||...
T Consensus 434 AktG~GI~eLle~I~~~ 450 (787)
T PRK05306 434 AKTGEGIDELLEAILLQ 450 (787)
T ss_pred CCCCCCchHHHHhhhhh
Confidence 99999999999999753
No 232
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.43 E-value=0.00026 Score=65.99 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=42.4
Q ss_pred CCCeEEEEecCCCCCCCCCHH----HHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCETVE----SITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~~~----~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
.++|+++++||.|+...-..+ ++...++ ...+.++++||++|.|++++|++|.+.++.
T Consensus 134 ~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~------~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 134 YGIPVLIVLTKADKLKKGERKKQLKKVRKALK------FGDDEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred cCCcEEEEEECcccCCHHHHHHHHHHHHHHHH------hcCCceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 358999999999985432222 2333333 225688999999999999999999987753
No 233
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.43 E-value=0.00011 Score=69.29 Aligned_cols=62 Identities=24% Similarity=0.505 Sum_probs=47.3
Q ss_pred ceeccccccccccCCCCcEEe-cCCCcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHHH
Q psy15732 66 LECRVCEDIFLTQGDKVPRLL-HCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELIE 137 (550)
Q Consensus 66 l~C~iC~~~~~~~~~~~P~~l-~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~ 137 (550)
|.|+.|..++. + |+.+ .|+|+||..||...+-. ..+.||.|.+.-.+-+ .|.+.+....-++
T Consensus 275 LkCplc~~Llr---n--p~kT~cC~~~fc~eci~~al~d-sDf~CpnC~rkdvlld----~l~pD~dk~~EvE 337 (427)
T COG5222 275 LKCPLCHCLLR---N--PMKTPCCGHTFCDECIGTALLD-SDFKCPNCSRKDVLLD----GLTPDIDKKLEVE 337 (427)
T ss_pred ccCcchhhhhh---C--cccCccccchHHHHHHhhhhhh-ccccCCCcccccchhh----ccCccHHHHHHHH
Confidence 99999999999 8 9888 79999999999987664 5688999987543333 4666555443333
No 234
>PRK12288 GTPase RsgA; Reviewed
Probab=97.43 E-value=0.00043 Score=70.31 Aligned_cols=83 Identities=18% Similarity=0.152 Sum_probs=51.6
Q ss_pred EEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCC
Q psy15732 448 VTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSG 527 (550)
Q Consensus 448 ~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g 527 (550)
++++++..+. .+|.....||..+ . ..++|++||+||+||........+.+.+.. + ....+.++.+||++|
T Consensus 124 vlIV~s~~p~---~s~~~Ldr~L~~a-~---~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~--y-~~~g~~v~~vSA~tg 193 (347)
T PRK12288 124 IVIVSAVLPE---LSLNIIDRYLVAC-E---TLGIEPLIVLNKIDLLDDEGRAFVNEQLDI--Y-RNIGYRVLMVSSHTG 193 (347)
T ss_pred EEEEEeCCCC---CCHHHHHHHHHHH-H---hcCCCEEEEEECccCCCcHHHHHHHHHHHH--H-HhCCCeEEEEeCCCC
Confidence 4444544333 3444445666533 2 246899999999999543222223322221 1 133468999999999
Q ss_pred CCHHHHHHHHHHH
Q psy15732 528 EGLHEGLDWLSRQ 540 (550)
Q Consensus 528 ~gi~e~f~~l~~~ 540 (550)
+||++++++|...
T Consensus 194 ~GideL~~~L~~k 206 (347)
T PRK12288 194 EGLEELEAALTGR 206 (347)
T ss_pred cCHHHHHHHHhhC
Confidence 9999999999763
No 235
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.41 E-value=9.7e-05 Score=53.45 Aligned_cols=43 Identities=28% Similarity=0.605 Sum_probs=32.1
Q ss_pred CcceeccccccccccCCCCcEEe-cCCCcchhhhHhhcccCCCccCCCC
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLL-HCGHTVCLACLLRLPIKDDTITCPF 111 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l-~CgH~fC~~Cl~~~~~~~~~~~CP~ 111 (550)
-.+.|||.+..|. + |+.- .|||+|.+..|..++.......||.
T Consensus 10 ~~~~CPiT~~~~~---~--PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFE---D--PVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-S---S--EEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhh---C--CcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 4589999999999 9 9886 9999999999999996667889998
No 236
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.40 E-value=0.0004 Score=62.24 Aligned_cols=56 Identities=23% Similarity=0.256 Sum_probs=39.9
Q ss_pred CCeEEEEecCCCCCC-CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHH
Q psy15732 481 DAALLLLANKQDIPG-CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQ 540 (550)
Q Consensus 481 ~~pili~~NK~Dl~~-~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~ 540 (550)
+.|++|++||.|+.. .....++.+.+.. ......++++||++|.|+++.|+||.+.
T Consensus 111 ~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 111 KTPVILVLNKIDLVKDKEDLLPLLEKLKE----LGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred CCCEEEEEEchhccccHHHHHHHHHHHHh----ccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 579999999999963 2222333333321 1224578999999999999999999875
No 237
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.39 E-value=0.00042 Score=67.93 Aligned_cols=92 Identities=26% Similarity=0.338 Sum_probs=62.5
Q ss_pred EEEEeeCCCCCccch-hhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC-CCHHHHHHhcCCCcccCCCcEEEEE-e
Q psy15732 446 RVVTLGLDSADSADK-ERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC-ETVESITEAFDLYKLCCGRSWHIQA-C 522 (550)
Q Consensus 446 ~~~~~~~d~~D~~d~-~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~-~~~~~i~~~~~l~~~~~~~~~~~~~-~ 522 (550)
-+.++++++.|..|+ +.++....+|... ++.+.+.|.+||+||+|++.. ...+++.+.+. ....|..+. +
T Consensus 241 L~hviD~s~~~~~dp~~~~~~i~~EL~~Y--~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~-----~~~~~~~~~~I 313 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDYQTIRNELEKY--SPKLAEKPRIVVLNKIDLPLDEEELEELKKALA-----EALGWEVFYLI 313 (369)
T ss_pred eEEEEecCcccCCCHHHHHHHHHHHHHHh--hHHhccCceEEEEeccCCCcCHHHHHHHHHHHH-----HhcCCCcceee
Confidence 345566666665554 5666667777766 456788999999999996543 23344444443 123344333 9
Q ss_pred cccCCCCHHHHHHHHHHHHHHh
Q psy15732 523 NAQSGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 523 SA~~g~gi~e~f~~l~~~~~~~ 544 (550)
||.|++|+++....+.+.+.+.
T Consensus 314 Sa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 314 SALTREGLDELLRALAELLEET 335 (369)
T ss_pred ehhcccCHHHHHHHHHHHHHHh
Confidence 9999999999999998887655
No 238
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.34 E-value=0.00033 Score=69.58 Aligned_cols=80 Identities=16% Similarity=0.122 Sum_probs=49.5
Q ss_pred EEEeeCCCCCccchh-hHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEeccc
Q psy15732 447 VVTLGLDSADSADKE-RLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQ 525 (550)
Q Consensus 447 ~~~~~~d~~D~~d~~-~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~ 525 (550)
.+++.+|..+ +. ++.....||..+.. .++|++||+||+||... .+... ... .+ ....+.++.+||+
T Consensus 81 ~vllV~d~~~---p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~--~~~~~-~~~--~~-~~~g~~v~~vSA~ 147 (287)
T cd01854 81 QLVIVVSLNE---PFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDD--EEEEL-ELV--EA-LALGYPVLAVSAK 147 (287)
T ss_pred EEEEEEEcCC---CCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCCh--HHHHH-HHH--HH-HhCCCeEEEEECC
Confidence 3445555433 33 44444556665532 35899999999999543 11111 111 00 1234688999999
Q ss_pred CCCCHHHHHHHHHH
Q psy15732 526 SGEGLHEGLDWLSR 539 (550)
Q Consensus 526 ~g~gi~e~f~~l~~ 539 (550)
+|.|+++.+.+|..
T Consensus 148 ~g~gi~~L~~~L~~ 161 (287)
T cd01854 148 TGEGLDELREYLKG 161 (287)
T ss_pred CCccHHHHHhhhcc
Confidence 99999999999875
No 239
>KOG1813|consensus
Probab=97.33 E-value=0.00013 Score=69.34 Aligned_cols=46 Identities=28% Similarity=0.602 Sum_probs=40.9
Q ss_pred ceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 66 LECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 66 l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
+.|-||.++|. + |+...|||+||..|....+. ....|++|.+.+..
T Consensus 242 f~c~icr~~f~---~--pVvt~c~h~fc~~ca~~~~q--k~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 242 FKCFICRKYFY---R--PVVTKCGHYFCEVCALKPYQ--KGEKCYVCSQQTHG 287 (313)
T ss_pred ccccccccccc---c--chhhcCCceeehhhhccccc--cCCcceeccccccc
Confidence 56999999999 9 99999999999999988876 44579999998865
No 240
>KOG1814|consensus
Probab=97.32 E-value=0.00014 Score=72.00 Aligned_cols=124 Identities=19% Similarity=0.326 Sum_probs=70.8
Q ss_pred CCcceeccccccccccCCCCcEEecCCCcchhhhHhhccc---C---CCccCCCCCCCcccCCCCCccCccccHHHHHHH
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPI---K---DDTITCPFDRQPTPVGYSGVWGLKKNFALLELI 136 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~---~---~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~ 136 (550)
...+.|.||++...-+ +.=+.|||+|.||++|+..+.. + .....||.+.-....+++- .+-..-.++-
T Consensus 182 ~slf~C~ICf~e~~G~--~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~a~~g~----vKelvg~EL~ 255 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQ--HCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSVAPPGQ----VKELVGDELF 255 (445)
T ss_pred hhcccceeeehhhcCc--ceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcccCCchH----HHHHHHHHHH
Confidence 3568899999999842 3367789999999999988765 1 2456798876665444321 1111122233
Q ss_pred HHHHhccccccccCCcchhhhhcccccccccccCCCCc---cccccccccccchhhhhHhhhhhcCCC
Q psy15732 137 EKIQTNDEKATESIPLFSAELHIKCDFSLQLHIKCDED---ESHIAVLYCTVCASHLCEQCASDSHAT 201 (550)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~C~~~---~~~~A~~~C~~C~~~lC~~C~~~h~~~ 201 (550)
+++.....+.+. ..-.+...|.. ..|+.. +...+..-|..|+..+|..|...-|..
T Consensus 256 arYe~l~lqk~l----~~msdv~yCPr-----~~Cq~p~~~d~~~~l~~CskCnFaFCtlCk~t~HG~ 314 (445)
T KOG1814|consen 256 ARYEKLMLQKTL----ELMSDVVYCPR-----ACCQLPVKQDPGRALAICSKCNFAFCTLCKLTWHGV 314 (445)
T ss_pred HHHHHHHHHHHH----HhhcccccCCh-----hhccCccccCchhhhhhhccCccHHHHHHHHhhcCC
Confidence 333322111000 00001111111 112211 234578899999999999999886653
No 241
>PRK00089 era GTPase Era; Reviewed
Probab=97.30 E-value=0.00042 Score=69.15 Aligned_cols=86 Identities=19% Similarity=0.237 Sum_probs=52.5
Q ss_pred EEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC-CCHHHHHHhcCCCcccCCCcEEEEEecc
Q psy15732 446 RVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC-ETVESITEAFDLYKLCCGRSWHIQACNA 524 (550)
Q Consensus 446 ~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~-~~~~~i~~~~~l~~~~~~~~~~~~~~SA 524 (550)
.++++.+|+.+ .+.+...++...+.. .++|++||+||+|+... ....+..+.+. .. .....++++||
T Consensus 86 D~il~vvd~~~-----~~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~--~~--~~~~~i~~iSA 153 (292)
T PRK00089 86 DLVLFVVDADE-----KIGPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELS--EL--MDFAEIVPISA 153 (292)
T ss_pred CEEEEEEeCCC-----CCChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHH--hh--CCCCeEEEecC
Confidence 34555666544 122223344333332 35899999999999632 12222222222 00 12457899999
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q psy15732 525 QSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 525 ~~g~gi~e~f~~l~~~~~~ 543 (550)
++|.|+++.++||.+.+..
T Consensus 154 ~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 154 LKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred CCCCCHHHHHHHHHHhCCC
Confidence 9999999999999998753
No 242
>KOG4423|consensus
Probab=97.29 E-value=0.0005 Score=61.21 Aligned_cols=91 Identities=14% Similarity=0.086 Sum_probs=58.6
Q ss_pred EeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC-CC--HHHHHHhcCCCcccCCCcEEEEEeccc
Q psy15732 449 TLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC-ET--VESITEAFDLYKLCCGRSWHIQACNAQ 525 (550)
Q Consensus 449 ~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~-~~--~~~i~~~~~l~~~~~~~~~~~~~~SA~ 525 (550)
.+++|...+++++-...|+..|..-+.-+....+|+++++||+|.... .. ...+.++.+-+.+ -..++||||
T Consensus 103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf-----~gwtets~K 177 (229)
T KOG4423|consen 103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGF-----EGWTETSAK 177 (229)
T ss_pred EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCc-----cceeeeccc
Confidence 344444445554444444444433333344456899999999998532 22 3445555553334 367899999
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q psy15732 526 SGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 526 ~g~gi~e~f~~l~~~~~~~ 544 (550)
...+|+|+...|++.+.-+
T Consensus 178 enkni~Ea~r~lVe~~lvn 196 (229)
T KOG4423|consen 178 ENKNIPEAQRELVEKILVN 196 (229)
T ss_pred cccChhHHHHHHHHHHHhh
Confidence 9999999999999988655
No 243
>PRK00098 GTPase RsgA; Reviewed
Probab=97.28 E-value=0.00024 Score=70.93 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=37.9
Q ss_pred CCCeEEEEecCCCCCCCC-CHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCE-TVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSR 539 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~-~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~ 539 (550)
.++|++||+||+||.... ...+..+.+. ...+.++.+||++|.||++.+++|..
T Consensus 110 ~~ip~iIVlNK~DL~~~~~~~~~~~~~~~------~~g~~v~~vSA~~g~gi~~L~~~l~g 164 (298)
T PRK00098 110 NGIKPIIVLNKIDLLDDLEEARELLALYR------AIGYDVLELSAKEGEGLDELKPLLAG 164 (298)
T ss_pred CCCCEEEEEEhHHcCCCHHHHHHHHHHHH------HCCCeEEEEeCCCCccHHHHHhhccC
Confidence 468999999999995221 1112222221 23468899999999999999999854
No 244
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.28 E-value=0.00066 Score=76.14 Aligned_cols=88 Identities=11% Similarity=0.018 Sum_probs=53.5
Q ss_pred EEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccC
Q psy15732 447 VVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQS 526 (550)
Q Consensus 447 ~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~ 526 (550)
++++.+|+. +..+++.. .++..+.. .++|++||+||+||.+....+.+.+.+... +..-....++++||++
T Consensus 535 vvilViDat---~~~s~~~~-~i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~-l~~~~~~~ii~iSAkt 605 (712)
T PRK09518 535 LALFLFDAS---QPISEQDL-KVMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTE-FDRVTWARRVNLSAKT 605 (712)
T ss_pred EEEEEEECC---CCCCHHHH-HHHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHh-ccCCCCCCEEEEECCC
Confidence 444555554 33344433 23343322 368999999999996543333444333211 1001234678899999
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy15732 527 GEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 527 g~gi~e~f~~l~~~~~~ 543 (550)
|.||+++|+.+.+.+.+
T Consensus 606 g~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 606 GWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999887754
No 245
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.26 E-value=0.00034 Score=64.94 Aligned_cols=89 Identities=24% Similarity=0.292 Sum_probs=52.4
Q ss_pred EEEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCC---CHHHHHHhc-CCCcccCC-CcEEE
Q psy15732 445 MRVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCE---TVESITEAF-DLYKLCCG-RSWHI 519 (550)
Q Consensus 445 ~~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~---~~~~i~~~~-~l~~~~~~-~~~~~ 519 (550)
...+++.+|+.+.-.... .+.+..+ . ..++|++|+.||+|+.... ..+++...+ .-..+ .+ ..+++
T Consensus 94 ~D~ailvVda~~g~~~~~----~~~l~~~-~---~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~v 164 (188)
T PF00009_consen 94 ADIAILVVDANDGIQPQT----EEHLKIL-R---ELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGE-NGEEIVPV 164 (188)
T ss_dssp SSEEEEEEETTTBSTHHH----HHHHHHH-H---HTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTS-TTTSTEEE
T ss_pred cccceeeeeccccccccc----ccccccc-c---ccccceEEeeeeccchhhhHHHHHHHHHHHhcccccc-CccccceE
Confidence 345666666654433221 2222322 1 2458999999999997221 122233222 11111 12 46899
Q ss_pred EEecccCCCCHHHHHHHHHHHHH
Q psy15732 520 QACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 520 ~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
+++||++|.||++.++.|.+.+.
T Consensus 165 i~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 165 IPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp EEEBTTTTBTHHHHHHHHHHHS-
T ss_pred EEEecCCCCCHHHHHHHHHHhCc
Confidence 99999999999999999988763
No 246
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=97.26 E-value=0.00041 Score=63.16 Aligned_cols=62 Identities=21% Similarity=0.372 Sum_probs=46.5
Q ss_pred eEEEEEeeCCCCCccchhhHHHHHHHHHHHhhccC--cCCCeEEEEecCCCCCCCCCHHHHHHhcC
Q psy15732 444 EMRVVTLGLDSADSADKERLPEALAELTKLIAEKE--LKDAALLLLANKQDIPGCETVESITEAFD 507 (550)
Q Consensus 444 ~~~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~--~~~~pili~~NK~Dl~~~~~~~~i~~~~~ 507 (550)
..+.+++++|. +++...+.++.+.|++++.+.. ...+||||++||+|+..+.+...|...|+
T Consensus 75 ~~k~IIfvvDS--s~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE 138 (181)
T PF09439_consen 75 NAKGIIFVVDS--STDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLE 138 (181)
T ss_dssp GEEEEEEEEET--TTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHH
T ss_pred hCCEEEEEEeC--ccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHH
Confidence 45778888998 4577789999999999998765 35689999999999999988888887775
No 247
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.24 E-value=0.00036 Score=69.85 Aligned_cols=63 Identities=21% Similarity=0.274 Sum_probs=42.2
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHhc--CCCcccC-CCcE--EEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCETVESITEAF--DLYKLCC-GRSW--HIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~~~~i~~~~--~l~~~~~-~~~~--~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
.++|.+|++||+|+.+......+...+ .+..+.. ...| .++.+||++|+||++.++||.+.+.
T Consensus 171 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 171 MEIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred hhhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 467889999999997664433222221 1111111 1233 4899999999999999999988643
No 248
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=97.24 E-value=0.00072 Score=71.13 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=50.7
Q ss_pred EEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEeccc
Q psy15732 446 RVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQ 525 (550)
Q Consensus 446 ~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~ 525 (550)
.++++.+|.. ++.+++.. |+..+.. .++|++||+||+|+... +..++.+. ....++.+||+
T Consensus 284 D~il~V~D~s---~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~~~~---------~~~~~~~vSak 344 (442)
T TIGR00450 284 DLVIYVLDAS---QPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFFVSS---------KVLNSSNLSAK 344 (442)
T ss_pred CEEEEEEECC---CCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhhhhh---------cCCceEEEEEe
Confidence 3455555553 34444443 6665531 35899999999999654 22222222 22357889999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy15732 526 SGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 526 ~g~gi~e~f~~l~~~~~~ 543 (550)
+ .||+++|+.|.+.+..
T Consensus 345 ~-~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 345 Q-LKIKALVDLLTQKINA 361 (442)
T ss_pred c-CCHHHHHHHHHHHHHH
Confidence 8 5999999999988754
No 249
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.23 E-value=0.00082 Score=71.15 Aligned_cols=62 Identities=21% Similarity=0.225 Sum_probs=43.0
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
.++|++|++||+|+.......++.+.+.. .+.......++++||++|.||++.|+++.+...
T Consensus 283 ~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~-~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 283 AGRALVIVVNKWDLVDEKTMEEFKKELRR-RLPFLDYAPIVFISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred cCCcEEEEEECccCCCHHHHHHHHHHHHH-hcccccCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 35899999999999743223344443331 111123468999999999999999999887553
No 250
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=97.22 E-value=0.00047 Score=61.35 Aligned_cols=64 Identities=22% Similarity=0.296 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC----CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHH
Q psy15732 461 ERLPEALAELTKLIAEKELKDAALLLLANKQDIPG----CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDW 536 (550)
Q Consensus 461 ~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~----~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~ 536 (550)
..++.....+.++++ .++|++++.||+|+-. .++.+.+.+.++. +++++||++|+|+++.++.
T Consensus 89 ~~l~r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~---------pvi~~sa~~~~g~~~L~~~ 155 (156)
T PF02421_consen 89 TNLERNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLGV---------PVIPVSARTGEGIDELKDA 155 (156)
T ss_dssp GGHHHHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS----------EEEEBTTTTBTHHHHHHH
T ss_pred CCHHHHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCC---------CEEEEEeCCCcCHHHHHhh
Confidence 345544444445542 3599999999999822 2467888888874 7899999999999999876
Q ss_pred H
Q psy15732 537 L 537 (550)
Q Consensus 537 l 537 (550)
|
T Consensus 156 I 156 (156)
T PF02421_consen 156 I 156 (156)
T ss_dssp H
T ss_pred C
Confidence 4
No 251
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.22 E-value=0.00032 Score=65.66 Aligned_cols=53 Identities=21% Similarity=0.297 Sum_probs=38.8
Q ss_pred EEEecCCCCCCCC--CHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHH
Q psy15732 485 LLLANKQDIPGCE--TVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 485 li~~NK~Dl~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
++++||+|+.+.. ..+.+.+.+.. + .....+++|||++|+||++.|+||.+.+
T Consensus 141 ~~~~~k~d~~~~~~~~~~~~~~~~~~--~--~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 141 LLVINKIDLAPMVGADLGVMERDAKK--M--RGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred EEEEEhhhccccccccHHHHHHHHHH--h--CCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 7889999997532 34444444431 1 2246789999999999999999999765
No 252
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.17 E-value=0.00037 Score=62.49 Aligned_cols=57 Identities=14% Similarity=0.037 Sum_probs=39.2
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 481 DAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 481 ~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
+.|+++|+||+|+... +++.....+ . ......++.+||++|.|+++.++.|.+.+..
T Consensus 41 ~~p~iiv~NK~Dl~~~---~~~~~~~~~--~-~~~~~~~~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 41 GKKLLIVLNKADLVPK---EVLEKWKSI--K-ESEGIPVVYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred CCcEEEEEEhHHhCCH---HHHHHHHHH--H-HhCCCcEEEEEccccccHHHHHHHHHHHHhh
Confidence 5899999999998532 222221110 0 0123468999999999999999999887643
No 253
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.16 E-value=0.00079 Score=73.45 Aligned_cols=61 Identities=18% Similarity=0.211 Sum_probs=42.5
Q ss_pred CCe-EEEEecCCCCCCCCCH----HHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 481 DAA-LLLLANKQDIPGCETV----ESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 481 ~~p-ili~~NK~Dl~~~~~~----~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
++| ++|++||+|+.+.... +++.+.+.-..+ ...+.++++||++|+||++.+.+|.+.+..
T Consensus 102 gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~--~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 102 GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIF--LKNAKIFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCC--CCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence 577 9999999999654222 223333221111 125789999999999999999999887654
No 254
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.13 E-value=0.00092 Score=60.04 Aligned_cols=57 Identities=12% Similarity=-0.000 Sum_probs=38.8
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
.++|+++|.||+||... +++..++.. +.+.....++.+||++|.|+++.+++|.+.+
T Consensus 38 ~~~p~ilVlNKiDl~~~---~~~~~~~~~--~~~~~~~~~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 38 PHKHLIFVLNKCDLVPT---WVTARWVKI--LSKEYPTIAFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred CCCCEEEEEEchhcCCH---HHHHHHHHH--HhcCCcEEEEEeeccccccHHHHHHHHHHHH
Confidence 35899999999999432 333322221 1112234468899999999999999997764
No 255
>PLN00023 GTP-binding protein; Provisional
Probab=97.12 E-value=0.001 Score=66.16 Aligned_cols=52 Identities=13% Similarity=0.129 Sum_probs=40.8
Q ss_pred eEEEEEeeCCCC---------------------CccchhhHHHHHHHHHHHhhccC-----------cCCCeEEEEecCC
Q psy15732 444 EMRVVTLGLDSA---------------------DSADKERLPEALAELTKLIAEKE-----------LKDAALLLLANKQ 491 (550)
Q Consensus 444 ~~~~~~~~~d~~---------------------D~~d~~~~~~~~~~l~~~~~~~~-----------~~~~pili~~NK~ 491 (550)
.+.+.+|++.|. |+++.++|++...|++.+..... ..++||+|||||+
T Consensus 82 ~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~ 161 (334)
T PLN00023 82 DFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKA 161 (334)
T ss_pred eEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECc
Confidence 355677777776 89999999999999998865421 1358999999999
Q ss_pred CCCC
Q psy15732 492 DIPG 495 (550)
Q Consensus 492 Dl~~ 495 (550)
||..
T Consensus 162 DL~~ 165 (334)
T PLN00023 162 DIAP 165 (334)
T ss_pred cccc
Confidence 9954
No 256
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.09 E-value=0.00098 Score=74.78 Aligned_cols=56 Identities=27% Similarity=0.271 Sum_probs=39.9
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
.++|+++|+||+|+.... ....+...+ .+ . ..+++||++|.||+++|+||.+.+..
T Consensus 382 ~~~pvIlV~NK~D~~~~~--~~~~~~~~l-g~--~---~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 382 AGKPVVLAVNKIDDQASE--YDAAEFWKL-GL--G---EPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred cCCCEEEEEECcccccch--hhHHHHHHc-CC--C---CeEEEECCCCCCchHHHHHHHHhccc
Confidence 468999999999986432 222332222 11 1 24689999999999999999998754
No 257
>COG2262 HflX GTPases [General function prediction only]
Probab=97.09 E-value=0.0018 Score=65.32 Aligned_cols=78 Identities=26% Similarity=0.363 Sum_probs=48.8
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|++|++..+. ....++++..-...++|+|+|.||+|+-.... +...+. . ..+ ..+.+||++|.|++..++
T Consensus 280 DaSdp~~~~~-~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~--~---~~~-~~v~iSA~~~~gl~~L~~ 349 (411)
T COG2262 280 DASDPEILEK-LEAVEDVLAEIGADEIPIILVLNKIDLLEDEE---ILAELE--R---GSP-NPVFISAKTGEGLDLLRE 349 (411)
T ss_pred ecCChhHHHH-HHHHHHHHHHcCCCCCCEEEEEecccccCchh---hhhhhh--h---cCC-CeEEEEeccCcCHHHHHH
Confidence 4455432222 23334455554556799999999999743321 111111 0 112 567899999999999999
Q ss_pred HHHHHHHH
Q psy15732 536 WLSRQLIA 543 (550)
Q Consensus 536 ~l~~~~~~ 543 (550)
-|.+.+..
T Consensus 350 ~i~~~l~~ 357 (411)
T COG2262 350 RIIELLSG 357 (411)
T ss_pred HHHHHhhh
Confidence 99888763
No 258
>KOG0824|consensus
Probab=97.08 E-value=0.00023 Score=67.76 Aligned_cols=49 Identities=29% Similarity=0.443 Sum_probs=40.9
Q ss_pred cceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 65 ALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 65 ~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
.-.|+||+..-. - |+.|+|+|-||.-||...... ....||+||.++...
T Consensus 7 ~~eC~IC~nt~n---~--Pv~l~C~HkFCyiCiKGsy~n-dk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTGN---C--PVNLYCFHKFCYICIKGSYKN-DKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccCC---c--Cccccccchhhhhhhcchhhc-CCCCCceecCCCCcc
Confidence 358999999998 8 999999999999999876432 556799999998653
No 259
>PRK13768 GTPase; Provisional
Probab=97.07 E-value=0.0012 Score=64.16 Aligned_cols=94 Identities=18% Similarity=0.148 Sum_probs=58.7
Q ss_pred EEEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCC--------C-------
Q psy15732 445 MRVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDL--------Y------- 509 (550)
Q Consensus 445 ~~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l--------~------- 509 (550)
..++++.+|+....++..+... .|+...... ..++|+++|+||+|+......+++...+.- .
T Consensus 129 ~~~ii~liD~~~~~~~~d~~~~-~~l~~~~~~--~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~ 205 (253)
T PRK13768 129 KSVVVFLIDAVLAKTPSDFVSL-LLLALSVQL--RLGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQG 205 (253)
T ss_pred CeEEEEEechHHhCCHHHHHHH-HHHHHHHHH--HcCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHH
Confidence 3456667777655555555443 333322111 136899999999999665444444443331 0
Q ss_pred --------cccC-CCcEEEEEecccCCCCHHHHHHHHHHHH
Q psy15732 510 --------KLCC-GRSWHIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 510 --------~~~~-~~~~~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
.+.. .....++++||++|+|+++.++||.+.+
T Consensus 206 ~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 206 LLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred HHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 0100 1235789999999999999999998876
No 260
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=97.07 E-value=0.0011 Score=69.27 Aligned_cols=58 Identities=17% Similarity=0.195 Sum_probs=40.8
Q ss_pred CeEEEEecCCCCCCCCC----HHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 482 AALLLLANKQDIPGCET----VESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 482 ~pili~~NK~Dl~~~~~----~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
.|++|++||+|+.+... .+++.+.+.- .. ...+.++++||++|+||+++++||...+.
T Consensus 135 ~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~-~~--~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 135 KNIVIVQNKIDLVSKEKALENYEEIKEFVKG-TV--AENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred CeEEEEEEccccCCHHHHHHHHHHHHhhhhh-cc--cCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 47899999999965321 2333333221 01 23578999999999999999999998654
No 261
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.07 E-value=0.00051 Score=70.45 Aligned_cols=59 Identities=25% Similarity=0.328 Sum_probs=40.2
Q ss_pred CCeEEEEecCCCCC-CCCCHHHHHHhcC--CCcccCCCcEEEEEecccCCCCHHHHHHHHHHH
Q psy15732 481 DAALLLLANKQDIP-GCETVESITEAFD--LYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQ 540 (550)
Q Consensus 481 ~~pili~~NK~Dl~-~~~~~~~i~~~~~--l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~ 540 (550)
+.|+++|+||+||. .....+++.+++. +.... -....++.+||++|.||+++|++|.+.
T Consensus 90 ~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g-~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 90 GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELG-LKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred CCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcC-CCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 57999999999984 4445555554432 11110 011248889999999999999999764
No 262
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.05 E-value=0.00037 Score=64.10 Aligned_cols=48 Identities=15% Similarity=0.199 Sum_probs=34.2
Q ss_pred CCCeEEEEecCCCCCCCC----CHHHHHHhcCCCcccCCCcEEEEEecccCCCCHH
Q psy15732 480 KDAALLLLANKQDIPGCE----TVESITEAFDLYKLCCGRSWHIQACNAQSGEGLH 531 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~----~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~ 531 (550)
.++|++|++||+|+.... ..+++.+.++.. ...+.++++||++|+||+
T Consensus 128 ~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~----~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 128 RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD----ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc----cCCCceEEEECCCCCCCC
Confidence 368999999999996432 234455555421 234689999999999984
No 263
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=97.03 E-value=0.0014 Score=63.05 Aligned_cols=51 Identities=20% Similarity=0.128 Sum_probs=39.3
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
.-+|+++++||+|+.. .+++..... ...++++||++|.|++++|++|.+.+
T Consensus 175 ~y~p~iiV~NK~Dl~~---~~~~~~~~~--------~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 175 VYIPCLYVYNKIDLIS---IEELDLLAR--------QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred eEeeEEEEEECccCCC---HHHHHHHhc--------CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 4589999999999853 455553222 23578899999999999999998865
No 264
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.02 E-value=0.0015 Score=66.56 Aligned_cols=55 Identities=16% Similarity=0.332 Sum_probs=43.8
Q ss_pred CeEEEEecCCCCCCCC---CHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 482 AALLLLANKQDIPGCE---TVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 482 ~pili~~NK~Dl~~~~---~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
.-|+-|.||+|||.+- ...+|.+.++++.- ..+.+|||||.||+++++.|.+.+.
T Consensus 129 LeIiPViNKIDLP~Adpervk~eIe~~iGid~~------dav~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 129 LEIIPVLNKIDLPAADPERVKQEIEDIIGIDAS------DAVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred cEEEEeeecccCCCCCHHHHHHHHHHHhCCCcc------hheeEecccCCCHHHHHHHHHhhCC
Confidence 5688889999998773 35667777776433 4567999999999999999998874
No 265
>KOG0802|consensus
Probab=97.00 E-value=0.00028 Score=76.43 Aligned_cols=53 Identities=25% Similarity=0.367 Sum_probs=42.8
Q ss_pred CCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCccc
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTP 117 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~ 117 (550)
.....|+||.+.+.......|+.|+|||.||..|+..|++ ..-.||.||..+.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~e--r~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFE--RQQTCPTCRTVLY 341 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHH--HhCcCCcchhhhh
Confidence 3478999999999842123379999999999999999998 4567999999543
No 266
>KOG3161|consensus
Probab=96.98 E-value=0.00024 Score=73.90 Aligned_cols=72 Identities=29% Similarity=0.551 Sum_probs=52.1
Q ss_pred ccCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHHHH
Q psy15732 61 ILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELIEK 138 (550)
Q Consensus 61 ~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~~ 138 (550)
.+.+.+-|+||...|... .+.|+.|.|||++|..|+....+ -.|| |...-...-..++.++.|+.+..++..
T Consensus 7 ~w~~~l~c~ic~n~f~~~-~~~Pvsl~cghtic~~c~~~lyn----~scp-~~~De~~~~~~~~e~p~n~alL~~~~d 78 (861)
T KOG3161|consen 7 KWVLLLLCDICLNLFVVQ-RLEPVSLQCGHTICGHCVQLLYN----ASCP-TKRDEDSSLMQLKEEPRNYALLRREHD 78 (861)
T ss_pred hhHHHhhchHHHHHHHHH-hcCcccccccchHHHHHHHhHhh----ccCC-CCccccchhcChhhcchhHHHHHhhcc
Confidence 356788999997776654 57799999999999999998865 3477 443333223345678999988776643
No 267
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=96.97 E-value=0.003 Score=68.66 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=23.6
Q ss_pred CcEEEEEecccCCCCHHHHHHHHHHHH
Q psy15732 515 RSWHIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 515 ~~~~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
..+.++++||+||+|+++.+.||....
T Consensus 189 ~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 189 KTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred CCceEEEeecCCCCChhHHHHHHHHHH
Confidence 467999999999999999999997543
No 268
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=96.97 E-value=0.0011 Score=59.42 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=38.7
Q ss_pred CCeEEEEecCCCCCCCCCH----HHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHH
Q psy15732 481 DAALLLLANKQDIPGCETV----ESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQ 540 (550)
Q Consensus 481 ~~pili~~NK~Dl~~~~~~----~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~ 540 (550)
+.|+++++||+|+...-.. ..+...+.- . .....++++||++|.|+.++++||.+.
T Consensus 110 ~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~--~--~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 110 GIPFLVVLTKADKLKKSELAKALKEIKKELKL--F--EIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred CCCEEEEEEchhcCChHHHHHHHHHHHHHHHh--c--cCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 3799999999998432111 122222210 0 334678899999999999999999875
No 269
>KOG1673|consensus
Probab=96.97 E-value=0.0022 Score=55.38 Aligned_cols=95 Identities=12% Similarity=0.088 Sum_probs=67.7
Q ss_pred eEEEEEeeCCCC---------------------CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHH--
Q psy15732 444 EMRVVTLGLDSA---------------------DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVE-- 500 (550)
Q Consensus 444 ~~~~~~~~~d~~---------------------D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~-- 500 (550)
.+.+-+|++.|+ |.|++.+++..++|.+....-.. .-+|||| |.|-|+--..+++
T Consensus 68 ~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~Nk-tAiPilv-GTKyD~fi~lp~e~Q 145 (205)
T KOG1673|consen 68 DISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNK-TAIPILV-GTKYDLFIDLPPELQ 145 (205)
T ss_pred EEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCC-ccceEEe-ccchHhhhcCCHHHH
Confidence 567788999888 99999999999999988765432 4578876 9999974333332
Q ss_pred -HHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 501 -SITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 501 -~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
.|..... .+++--+..+|.|||.-.-||+..|+.+...+-
T Consensus 146 ~~I~~qar--~YAk~mnAsL~F~Sts~sINv~KIFK~vlAklF 186 (205)
T KOG1673|consen 146 ETISRQAR--KYAKVMNASLFFCSTSHSINVQKIFKIVLAKLF 186 (205)
T ss_pred HHHHHHHH--HHHHHhCCcEEEeeccccccHHHHHHHHHHHHh
Confidence 2222111 111122447888999999999999999887763
No 270
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=96.93 E-value=0.0036 Score=63.06 Aligned_cols=84 Identities=14% Similarity=0.183 Sum_probs=63.2
Q ss_pred hhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC------------------CCCHHHHHHhcC-----CCcccCCCc
Q psy15732 460 KERLPEALAELTKLIAEKELKDAALLLLANKQDIPG------------------CETVESITEAFD-----LYKLCCGRS 516 (550)
Q Consensus 460 ~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~------------------~~~~~~i~~~~~-----l~~~~~~~~ 516 (550)
..++.++...++.+++++...++|+||++||+|+-. .-+.++...++. +..- ..+.
T Consensus 207 ~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~-~~~~ 285 (317)
T cd00066 207 TNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRN-PNKE 285 (317)
T ss_pred chHHHHHHHHHHHHHhCccccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcC-CCCe
Confidence 379999999999999998889999999999999721 112333333332 1111 2478
Q ss_pred EEEEEecccCCCCHHHHHHHHHHHHHHh
Q psy15732 517 WHIQACNAQSGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 517 ~~~~~~SA~~g~gi~e~f~~l~~~~~~~ 544 (550)
+.+..|+|.+-.+|..+|+.+.+.+...
T Consensus 286 ~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 286 IYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred EEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999998887653
No 271
>PRK00093 GTP-binding protein Der; Reviewed
Probab=96.93 E-value=0.0015 Score=69.13 Aligned_cols=52 Identities=25% Similarity=0.322 Sum_probs=37.2
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHH
Q psy15732 481 DAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQ 540 (550)
Q Consensus 481 ~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~ 540 (550)
++|+++++||+|+... ...+.+...+ .+ -.++++||++|.||+++|++|...
T Consensus 109 ~~piilv~NK~D~~~~--~~~~~~~~~l-g~-----~~~~~iSa~~g~gv~~l~~~I~~~ 160 (435)
T PRK00093 109 NKPVILVVNKVDGPDE--EADAYEFYSL-GL-----GEPYPISAEHGRGIGDLLDAILEE 160 (435)
T ss_pred CCcEEEEEECccCccc--hhhHHHHHhc-CC-----CCCEEEEeeCCCCHHHHHHHHHhh
Confidence 5899999999997542 2233333221 11 136889999999999999999873
No 272
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=96.92 E-value=0.00075 Score=71.14 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=35.1
Q ss_pred CeEEEEecCCCCCCCCC------HHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHH
Q psy15732 482 AALLLLANKQDIPGCET------VESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGL 534 (550)
Q Consensus 482 ~pili~~NK~Dl~~~~~------~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f 534 (550)
.|++|++||+|+.+... ..++.+.+....+ ....+.|+++||++|.||.+++
T Consensus 142 ~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~-~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 142 NQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGY-NPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred CeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCC-CcccceEEEeeccccccccccc
Confidence 58999999999964211 2334444432222 1346899999999999998744
No 273
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.88 E-value=0.0012 Score=57.51 Aligned_cols=53 Identities=23% Similarity=0.325 Sum_probs=42.4
Q ss_pred CCeEEEEecCCCCC-CCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHH
Q psy15732 481 DAALLLLANKQDIP-GCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLS 538 (550)
Q Consensus 481 ~~pili~~NK~Dl~-~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~ 538 (550)
+.|++=|.+|+|+. +..+.+...++|..-... .+|.+||.+|+||++..+||-
T Consensus 89 ~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~-----~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 89 NKPVIGVITKIDLPSDDANIERAKKWLKNAGVK-----EIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred CCCEEEEEECccCccchhhHHHHHHHHHHcCCC-----CeEEEECCCCcCHHHHHHHHh
Confidence 47999999999997 445667777777654442 469999999999999999985
No 274
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.86 E-value=0.005 Score=62.66 Aligned_cols=84 Identities=14% Similarity=0.190 Sum_probs=62.3
Q ss_pred hhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC-----------------CCHHHHHHhcC-----CCcccCCCcE
Q psy15732 460 KERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC-----------------ETVESITEAFD-----LYKLCCGRSW 517 (550)
Q Consensus 460 ~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~-----------------~~~~~i~~~~~-----l~~~~~~~~~ 517 (550)
..++.++...++.+++++...++|+||++||+|+... -+.+++.+++. +..-...+.+
T Consensus 230 ~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~ 309 (342)
T smart00275 230 TNRMQESLNLFESICNSRWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSI 309 (342)
T ss_pred chHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceE
Confidence 4699999999999999988899999999999998311 12333333222 1111014678
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 518 HIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 518 ~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
.++.|+|.+-.++..+|+.+...+..
T Consensus 310 y~h~t~a~Dt~~~~~v~~~v~~~I~~ 335 (342)
T smart00275 310 YHHFTCATDTRNIRVVFDAVKDIILQ 335 (342)
T ss_pred EEEEeeecccHHHHHHHHHHHHHHHH
Confidence 88999999999999999988887754
No 275
>KOG1145|consensus
Probab=96.86 E-value=0.0041 Score=64.54 Aligned_cols=85 Identities=18% Similarity=0.209 Sum_probs=56.2
Q ss_pred EEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCccc---CCCcEEEEEec
Q psy15732 447 VVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLC---CGRSWHIQACN 523 (550)
Q Consensus 447 ~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~---~~~~~~~~~~S 523 (550)
++++++.+.|.--+.+.+.. .+....++||+|+.||+|.+++ +++.+...|-.+.+. -..+.+++++|
T Consensus 227 IvVLVVAadDGVmpQT~EaI--------khAk~A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~E~~GGdVQvipiS 297 (683)
T KOG1145|consen 227 IVVLVVAADDGVMPQTLEAI--------KHAKSANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVVEDLGGDVQVIPIS 297 (683)
T ss_pred EEEEEEEccCCccHhHHHHH--------HHHHhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccHHHcCCceeEEEee
Confidence 45555555566665554322 2223357999999999999876 555555554322221 15689999999
Q ss_pred ccCCCCHHHHHHHHHHH
Q psy15732 524 AQSGEGLHEGLDWLSRQ 540 (550)
Q Consensus 524 A~~g~gi~e~f~~l~~~ 540 (550)
|++|+|++..-+.+.-.
T Consensus 298 Al~g~nl~~L~eaill~ 314 (683)
T KOG1145|consen 298 ALTGENLDLLEEAILLL 314 (683)
T ss_pred cccCCChHHHHHHHHHH
Confidence 99999998777666543
No 276
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.84 E-value=0.004 Score=65.77 Aligned_cols=82 Identities=23% Similarity=0.248 Sum_probs=50.1
Q ss_pred EEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEeccc
Q psy15732 446 RVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQ 525 (550)
Q Consensus 446 ~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~ 525 (550)
.++++.+|+.+.-.... .+...||.+ .++|+++|+||+|+..... ...+...+ .+ -.++++||+
T Consensus 80 d~vl~vvD~~~~~~~~d-~~i~~~l~~-------~~~piilVvNK~D~~~~~~--~~~~~~~l-g~-----~~~~~vSa~ 143 (429)
T TIGR03594 80 DVILFVVDGREGLTPED-EEIAKWLRK-------SGKPVILVANKIDGKKEDA--VAAEFYSL-GF-----GEPIPISAE 143 (429)
T ss_pred CEEEEEEeCCCCCCHHH-HHHHHHHHH-------hCCCEEEEEECccCCcccc--cHHHHHhc-CC-----CCeEEEeCC
Confidence 45666666654222111 223344432 2589999999999865321 11121111 11 157899999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy15732 526 SGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 526 ~g~gi~e~f~~l~~~~~~ 543 (550)
+|.||.+.|+|+...+..
T Consensus 144 ~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 144 HGRGIGDLLDAILELLPE 161 (429)
T ss_pred cCCChHHHHHHHHHhcCc
Confidence 999999999999988743
No 277
>KOG0825|consensus
Probab=96.83 E-value=0.00017 Score=76.54 Aligned_cols=50 Identities=24% Similarity=0.400 Sum_probs=38.2
Q ss_pred CcceeccccccccccCCCCcE-EecCCCcchhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 64 LALECRVCEDIFLTQGDKVPR-LLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~-~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
..-.|++|..-|. ++.-. -.+|+|.||..|+..|.. ..-.||+||..+..
T Consensus 122 ~~~~CP~Ci~s~~---DqL~~~~k~c~H~FC~~Ci~sWsR--~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 122 VENQCPNCLKSCN---DQLEESEKHTAHYFCEECVGSWSR--CAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhHHHHHHH---HHhhccccccccccHHHHhhhhhh--hcccCchhhhhhhe
Confidence 4568999999998 42121 238999999999999876 44579999988753
No 278
>KOG0297|consensus
Probab=96.82 E-value=0.00083 Score=69.34 Aligned_cols=52 Identities=33% Similarity=0.665 Sum_probs=45.6
Q ss_pred cCCcceeccccccccccCCCCcEE-ecCCCcchhhhHhhcccCCCccCCCCCCCcccCCC
Q psy15732 62 LELALECRVCEDIFLTQGDKVPRL-LHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGY 120 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~~~P~~-l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~ 120 (550)
+++.+.|++|...+. + |+. ..|||.||..|+..+... ...||.|+.......
T Consensus 18 ~~~~l~C~~C~~vl~---~--p~~~~~cgh~fC~~C~~~~~~~--~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 18 LDENLLCPICMSVLR---D--PVQTTTCGHRFCAGCLLESLSN--HQKCPVCRQELTQAE 70 (391)
T ss_pred CcccccCcccccccc---C--CCCCCCCCCcccccccchhhcc--CcCCcccccccchhh
Confidence 578899999999999 9 988 499999999999999874 678999988876653
No 279
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=96.78 E-value=0.0029 Score=66.16 Aligned_cols=58 Identities=16% Similarity=0.167 Sum_probs=41.0
Q ss_pred CeEEEEecCCCCCCCCC----HHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 482 AALLLLANKQDIPGCET----VESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 482 ~pili~~NK~Dl~~~~~----~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
.|++|++||+|+.+... .+++...+... . ...+.++++||++|.||+++|++|...+.
T Consensus 140 ~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~-~--~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 140 KNIVIVQNKIDLVSKERALENYEQIKEFVKGT-V--AENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred CcEEEEEEeeccccchhHHHHHHHHHHHhccc-c--CCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 37899999999965321 23344333210 1 23578999999999999999999998764
No 280
>PRK13796 GTPase YqeH; Provisional
Probab=96.75 E-value=0.0022 Score=65.97 Aligned_cols=60 Identities=22% Similarity=0.273 Sum_probs=40.1
Q ss_pred CCeEEEEecCCCCCC-CCCHHHHHHhcCC--CcccCCCcEEEEEecccCCCCHHHHHHHHHHHH
Q psy15732 481 DAALLLLANKQDIPG-CETVESITEAFDL--YKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 481 ~~pili~~NK~Dl~~-~~~~~~i~~~~~l--~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
+.|+++|+||+||.. ....+++.+++.. ..+ .-....++.+||++|.||++++++|.+..
T Consensus 96 ~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~-g~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 96 NNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKEL-GLRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred CCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhc-CCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999943 3344555444320 000 00112578999999999999999997653
No 281
>KOG1532|consensus
Probab=96.71 E-value=0.0051 Score=58.51 Aligned_cols=91 Identities=19% Similarity=0.307 Sum_probs=66.6
Q ss_pred EEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCC-------CHHHHHHhcC-----------
Q psy15732 446 RVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCE-------TVESITEAFD----------- 507 (550)
Q Consensus 446 ~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~-------~~~~i~~~~~----------- 507 (550)
.+++++.|..-++.+..|-...-+.-.++.. ...|+||+.||.|+.+.. +.+...+.++
T Consensus 149 tvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~ 225 (366)
T KOG1532|consen 149 TVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLT 225 (366)
T ss_pred eEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhh
Confidence 4577788888899999997776666666644 458999999999997652 2333344333
Q ss_pred ------CCcccCCCcEEEEEecccCCCCHHHHHHHHHHHH
Q psy15732 508 ------LYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 508 ------l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
|+.+ .+.+..+.+||.||.|.++.|..+-+.+
T Consensus 226 ~SmSL~leeF--Y~~lrtv~VSs~tG~G~ddf~~av~~~v 263 (366)
T KOG1532|consen 226 RSMSLMLEEF--YRSLRTVGVSSVTGEGFDDFFTAVDESV 263 (366)
T ss_pred hhHHHHHHHH--HhhCceEEEecccCCcHHHHHHHHHHHH
Confidence 1111 3578899999999999999999887655
No 282
>KOG1785|consensus
Probab=96.63 E-value=0.00075 Score=66.37 Aligned_cols=48 Identities=31% Similarity=0.647 Sum_probs=39.9
Q ss_pred ceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 66 LECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 66 l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
-.|.||-+.-+ | -++-||||-.|..|+..|-.....-.||+||.++.-
T Consensus 370 eLCKICaendK---d--vkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 370 ELCKICAENDK---D--VKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHHhhccCC---C--cccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 35999999888 7 777899999999999998755446689999988754
No 283
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=96.61 E-value=0.0026 Score=56.92 Aligned_cols=57 Identities=21% Similarity=0.217 Sum_probs=39.0
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
.++|+++|.||+|+.. .+++.+++. .+.......++.+||++|.|+++.+++|.+..
T Consensus 28 ~~~p~IiVlNK~Dl~~---~~~~~~~~~--~~~~~~~~~ii~vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 28 KGKKLILVLNKADLVP---KEVLRKWLA--YLRHSYPTIPFKISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred CCCCEEEEEechhcCC---HHHHHHHHH--HHHhhCCceEEEEeccCCcChhhHHHHHHHHh
Confidence 4589999999999943 233333221 01011235688999999999999999997643
No 284
>KOG1734|consensus
Probab=96.57 E-value=0.00063 Score=63.58 Aligned_cols=54 Identities=20% Similarity=0.378 Sum_probs=43.4
Q ss_pred CcceeccccccccccC-------CCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 64 LALECRVCEDIFLTQG-------DKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~-------~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
+.-.|.+|.+.+..+. + -..|+|+|+|...||+.|..-+...+||.|++.+.+.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvien--ty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIEN--TYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CcchhHhhcchheeecchhhhhhh--heeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 3457999999888431 3 4678999999999999997755667899999998765
No 285
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.56 E-value=0.0015 Score=45.88 Aligned_cols=47 Identities=26% Similarity=0.517 Sum_probs=36.1
Q ss_pred CcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
.+..|-.|...-. . ..+++|||.+|..|.... +...||+|.+++...
T Consensus 6 ~~~~~~~~~~~~~---~--~~~~pCgH~I~~~~f~~~----rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 6 PEQPCVFCGFVGT---K--GTVLPCGHLICDNCFPGE----RYNGCPFCGTPFEFD 52 (55)
T ss_pred cceeEEEcccccc---c--cccccccceeeccccChh----hccCCCCCCCcccCC
Confidence 4556767766655 6 889999999999998654 445699999988654
No 286
>PRK14845 translation initiation factor IF-2; Provisional
Probab=96.55 E-value=0.0084 Score=68.82 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=24.0
Q ss_pred CCcEEEEEecccCCCCHHHHHHHHHHHH
Q psy15732 514 GRSWHIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 514 ~~~~~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
...+.++++||+||+||++.+.||....
T Consensus 645 ~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 645 TRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 3568999999999999999999987543
No 287
>KOG1002|consensus
Probab=96.55 E-value=0.00081 Score=68.47 Aligned_cols=53 Identities=23% Similarity=0.467 Sum_probs=44.7
Q ss_pred cCCcceeccccccccccCCCCcEEecCCCcchhhhHhhccc---CCCccCCCCCCCcccCC
Q psy15732 62 LELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPI---KDDTITCPFDRQPTPVG 119 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~---~~~~~~CP~Cr~~~~~~ 119 (550)
-.++..|.+|.+.-. + |+...|.|.||+.|+..+.. .+....||.|...+...
T Consensus 533 nk~~~~C~lc~d~ae---d--~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAE---D--YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred ccCceeecccCChhh---h--hHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 346789999999999 9 99999999999999987765 34558999999887654
No 288
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=96.55 E-value=0.0033 Score=59.95 Aligned_cols=59 Identities=17% Similarity=0.270 Sum_probs=39.4
Q ss_pred CCeEEEEecCCCCCCCC----CHHHHHHhcCCCcc--------------------cCCCcEEEEEecccCCCCHHHHHHH
Q psy15732 481 DAALLLLANKQDIPGCE----TVESITEAFDLYKL--------------------CCGRSWHIQACNAQSGEGLHEGLDW 536 (550)
Q Consensus 481 ~~pili~~NK~Dl~~~~----~~~~i~~~~~l~~~--------------------~~~~~~~~~~~SA~~g~gi~e~f~~ 536 (550)
++|++|+.||+|+.+.. ...++.+.+..... ......++|.+||.||+|+++..++
T Consensus 138 ~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~ 217 (224)
T cd04165 138 NIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAF 217 (224)
T ss_pred CCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHH
Confidence 48999999999985432 23334444432111 0123458999999999999999887
Q ss_pred HHH
Q psy15732 537 LSR 539 (550)
Q Consensus 537 l~~ 539 (550)
|..
T Consensus 218 L~~ 220 (224)
T cd04165 218 LNL 220 (224)
T ss_pred HHh
Confidence 753
No 289
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.53 E-value=0.00072 Score=51.38 Aligned_cols=53 Identities=26% Similarity=0.622 Sum_probs=24.6
Q ss_pred cceeccccccccccCCCCcEEe----cCCCcchhhhHhhcccC----CC-----ccCCCCCCCcccC
Q psy15732 65 ALECRVCEDIFLTQGDKVPRLL----HCGHTVCLACLLRLPIK----DD-----TITCPFDRQPTPV 118 (550)
Q Consensus 65 ~l~C~iC~~~~~~~~~~~P~~l----~CgH~fC~~Cl~~~~~~----~~-----~~~CP~Cr~~~~~ 118 (550)
++.|+||+..+... +++|... .|++.|...||..|+.. .. .-.||.|+.++..
T Consensus 2 ~~~C~IC~~~~~~~-~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDD-GEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT------B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCC-CCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 57899999987632 4457655 69999999999999861 11 1269999998764
No 290
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.51 E-value=0.0031 Score=57.52 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=37.9
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHH
Q psy15732 481 DAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 481 ~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
+.|+++|.||+||.+. +++...+. .+. .....++.+||++|.|+++...+|...+
T Consensus 46 ~k~~ilVlNK~Dl~~~---~~~~~~~~--~~~-~~~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 46 NKPRIIVLNKADLADP---KKTKKWLK--YFE-SKGEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred CCCEEEEEehhhcCCh---HHHHHHHH--HHH-hcCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 4789999999999532 22322211 010 1123678999999999999999998875
No 291
>PRK04004 translation initiation factor IF-2; Validated
Probab=96.39 E-value=0.014 Score=63.81 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.4
Q ss_pred CcEEEEEecccCCCCHHHHHHHHHHH
Q psy15732 515 RSWHIQACNAQSGEGLHEGLDWLSRQ 540 (550)
Q Consensus 515 ~~~~~~~~SA~~g~gi~e~f~~l~~~ 540 (550)
..+.++++||++|+||++.+.+|...
T Consensus 191 ~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 191 KTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred CCceEeeccCCCCCChHHHHHHHHHH
Confidence 46889999999999999999887643
No 292
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=96.39 E-value=0.0055 Score=64.59 Aligned_cols=52 Identities=13% Similarity=0.177 Sum_probs=34.9
Q ss_pred CeEEEEecCCCCCCCC------CHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHH
Q psy15732 482 AALLLLANKQDIPGCE------TVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGL 534 (550)
Q Consensus 482 ~pili~~NK~Dl~~~~------~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f 534 (550)
.|++|++||+|+.+.. ..+++.+.+....+. ...+.++++||++|+||++.+
T Consensus 140 ~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~-~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 140 NQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYK-PDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred CeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCC-cCcceEEEeecccCCCccccc
Confidence 4799999999996521 123444444322221 335789999999999999744
No 293
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=96.32 E-value=0.0017 Score=43.93 Aligned_cols=38 Identities=32% Similarity=0.785 Sum_probs=31.1
Q ss_pred cCCCCccccccccccccchhhhhHhhhhhcCCCcccCCccccc
Q psy15732 169 IKCDEDESHIAVLYCTVCASHLCEQCASDSHATRTLQKHRRIP 211 (550)
Q Consensus 169 ~~C~~~~~~~A~~~C~~C~~~lC~~C~~~h~~~~~~~~H~~~~ 211 (550)
..|..+....+..||.+|...+|..|....|+. |.+++
T Consensus 4 ~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~-----H~~~~ 41 (42)
T PF00643_consen 4 PKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG-----HKIVP 41 (42)
T ss_dssp SB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT-----SEEEE
T ss_pred ccCccCCccceEEEecCCCCccCccCCCCCCCC-----CEEeE
Confidence 358888888899999999999999999996654 66654
No 294
>PRK09866 hypothetical protein; Provisional
Probab=96.31 E-value=0.011 Score=63.56 Aligned_cols=89 Identities=18% Similarity=0.126 Sum_probs=52.8
Q ss_pred eEEEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCHHHHHHhcC--CCcccCCCcEEE
Q psy15732 444 EMRVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETVESITEAFD--LYKLCCGRSWHI 519 (550)
Q Consensus 444 ~~~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~~i~~~~~--l~~~~~~~~~~~ 519 (550)
...++++.+|+.+.-... ..++-+.+... ..+.|+++|.||+|+.+. ...+.+.+.+. +... ....-.+
T Consensus 258 eADvVLFVVDat~~~s~~-----DeeIlk~Lkk~-~K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~-~i~f~eI 330 (741)
T PRK09866 258 RASAVLAVLDYTQLKSIS-----DEEVREAILAV-GQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKG-CITPQQI 330 (741)
T ss_pred hCCEEEEEEeCCCCCChh-----HHHHHHHHHhc-CCCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhc-CCCCceE
Confidence 445677777775422111 11222222221 123699999999998532 12455555432 1111 0234479
Q ss_pred EEecccCCCCHHHHHHHHHH
Q psy15732 520 QACNAQSGEGLHEGLDWLSR 539 (550)
Q Consensus 520 ~~~SA~~g~gi~e~f~~l~~ 539 (550)
|++||++|.|+++.+++|..
T Consensus 331 fPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 331 FPVSSMWGYLANRARHELAN 350 (741)
T ss_pred EEEeCCCCCCHHHHHHHHHh
Confidence 99999999999999999876
No 295
>KOG1039|consensus
Probab=96.31 E-value=0.0018 Score=64.61 Aligned_cols=51 Identities=25% Similarity=0.713 Sum_probs=40.2
Q ss_pred CCcceeccccccccccCCCCcE-------E-ecCCCcchhhhHhhcccCCC-----ccCCCCCCCcccC
Q psy15732 63 ELALECRVCEDIFLTQGDKVPR-------L-LHCGHTVCLACLLRLPIKDD-----TITCPFDRQPTPV 118 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~-------~-l~CgH~fC~~Cl~~~~~~~~-----~~~CP~Cr~~~~~ 118 (550)
..+-.|.||++... + +. + .+|.|+||..|+..|..... ...||+||.....
T Consensus 159 s~~k~CGICme~i~---e--k~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETIN---E--KAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhcc---c--cchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 45789999999998 5 33 2 47999999999999874222 5789999988764
No 296
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=96.29 E-value=0.0088 Score=65.65 Aligned_cols=59 Identities=14% Similarity=0.101 Sum_probs=40.1
Q ss_pred Ce-EEEEecCCCCCCCCCH----HHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 482 AA-LLLLANKQDIPGCETV----ESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 482 ~p-ili~~NK~Dl~~~~~~----~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
+| ++|++||+|+.+.... +++.+.+.-.. -..+.++++||++|+||++.+++|.+....
T Consensus 104 i~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~---~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 104 NPMLTVALTKADRVDEARIAEVRRQVKAVLREYG---FAEAKLFVTAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred CCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcC---CCCCcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence 55 6799999999643222 23333332111 124579999999999999999999876543
No 297
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=96.22 E-value=0.015 Score=63.58 Aligned_cols=76 Identities=18% Similarity=0.223 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCC---HHHHHHhcC-CCcccCCCcEEEEEecccCCC----------
Q psy15732 463 LPEALAELTKLIAEKELKDAALLLLANKQDIPGCET---VESITEAFD-LYKLCCGRSWHIQACNAQSGE---------- 528 (550)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~---~~~i~~~~~-l~~~~~~~~~~~~~~SA~~g~---------- 528 (550)
+...+.||..+.. .++|++|++||+|++++.. .+++.+.+. +........+.++.+||++|.
T Consensus 102 ~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~ 177 (594)
T TIGR01394 102 MPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSD 177 (594)
T ss_pred cHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCccccc
Confidence 3445566666643 3589999999999976532 233444332 111001235679999999995
Q ss_pred CHHHHHHHHHHHHH
Q psy15732 529 GLHEGLDWLSRQLI 542 (550)
Q Consensus 529 gi~e~f~~l~~~~~ 542 (550)
||.+.|+.|.+.+.
T Consensus 178 gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 178 NMAPLFDAIVRHVP 191 (594)
T ss_pred CHHHHHHHHHHhCC
Confidence 89999999988764
No 298
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.21 E-value=0.0061 Score=60.23 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=38.9
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 481 DAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 481 ~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
+.|++||.||+||.+. .++..++. .+. .....++.+||++|.|+++.++.|.+.+..
T Consensus 48 ~kp~IiVlNK~DL~~~---~~~~~~~~--~~~-~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 48 NKPRLIVLNKADLADP---AVTKQWLK--YFE-EKGIKALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred CCCEEEEEEccccCCH---HHHHHHHH--HHH-HcCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 4799999999999532 22322211 010 112467899999999999999998877643
No 299
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.20 E-value=0.0039 Score=61.10 Aligned_cols=57 Identities=33% Similarity=0.412 Sum_probs=40.9
Q ss_pred CCeEEEEecCCCCCCCC--CHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHH
Q psy15732 481 DAALLLLANKQDIPGCE--TVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 481 ~~pili~~NK~Dl~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
..+-+||.||+||.... ..+++.+.+. .+ .....++++||++|+|+++.++||.++.
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr--~l--np~a~I~~vSA~tGeGld~L~~~L~~~~ 288 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAR--EV--NPEIEIILISATSGEGMDQWLNWLETQR 288 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHH--hh--CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45778999999996432 2444444432 11 2356899999999999999999998753
No 300
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=96.19 E-value=0.0035 Score=43.86 Aligned_cols=44 Identities=32% Similarity=0.557 Sum_probs=34.7
Q ss_pred eeccccccccccCCCCcEEecCC-----CcchhhhHhhcccCCCccCCCCCC
Q psy15732 67 ECRVCEDIFLTQGDKVPRLLHCG-----HTVCLACLLRLPIKDDTITCPFDR 113 (550)
Q Consensus 67 ~C~iC~~~~~~~~~~~P~~l~Cg-----H~fC~~Cl~~~~~~~~~~~CP~Cr 113 (550)
.|.||++... .++ |...||. |.+...|+.+|+.......||+|+
T Consensus 1 ~CrIC~~~~~-~~~--~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGD-EGD--PLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCC-CCC--eeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889998333 225 8888985 889999999999866667899995
No 301
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=96.16 E-value=0.14 Score=49.72 Aligned_cols=77 Identities=14% Similarity=0.186 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 284 NVQHLIEEITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHLRESLLVQEAAATSAVDMFVRERLGCLVQL 363 (550)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~~ 363 (550)
.|.+-++.++.....+......+++ .++.-...|.+.|..|+..|.+||..||.+++....+...-|...
T Consensus 154 nIEKSvKDLqRctvSL~RYr~~lke----------e~d~S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~aR 223 (302)
T PF07139_consen 154 NIEKSVKDLQRCTVSLTRYRVVLKE----------EMDSSIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEILDAR 223 (302)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666666666666 888889999999999999999999999999999999988888776
Q ss_pred HHHHHHH
Q psy15732 364 HDDMGFW 370 (550)
Q Consensus 364 ~~~l~~~ 370 (550)
....+..
T Consensus 224 qkkAeeL 230 (302)
T PF07139_consen 224 QKKAEEL 230 (302)
T ss_pred HHHHHHH
Confidence 6555443
No 302
>PRK10218 GTP-binding protein; Provisional
Probab=96.13 E-value=0.017 Score=63.20 Aligned_cols=62 Identities=16% Similarity=0.158 Sum_probs=41.9
Q ss_pred CCCeEEEEecCCCCCCCCCH---HHHHHhcC-CCcccCCCcEEEEEecccCCC----------CHHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCETV---ESITEAFD-LYKLCCGRSWHIQACNAQSGE----------GLHEGLDWLSRQL 541 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~~---~~i~~~~~-l~~~~~~~~~~~~~~SA~~g~----------gi~e~f~~l~~~~ 541 (550)
.++|++|++||+|++++... +++.+.+. +........|+++.+||++|. |+...|+.|...+
T Consensus 119 ~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 119 YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 35899999999999876443 34444432 111112346889999999998 5777777776665
No 303
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=96.10 E-value=0.013 Score=58.23 Aligned_cols=57 Identities=26% Similarity=0.344 Sum_probs=38.8
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 481 DAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 481 ~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
+.|++||.||+||.+........+++. .....++.+||++|.|+++.+++|...+..
T Consensus 51 ~kp~iiVlNK~DL~~~~~~~~~~~~~~------~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 51 NKPRLLILNKSDLADPEVTKKWIEYFE------EQGIKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred CCCEEEEEEchhcCCHHHHHHHHHHHH------HcCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 479999999999953211112222221 113467889999999999999988877643
No 304
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.09 E-value=0.0037 Score=56.78 Aligned_cols=55 Identities=29% Similarity=0.326 Sum_probs=39.5
Q ss_pred eEEEEecCCCCCCCCC--HHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHH
Q psy15732 483 ALLLLANKQDIPGCET--VESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 483 pili~~NK~Dl~~~~~--~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
.=|+|.||.||-..+. .+...+.... + .....|+.+|++||+|+++.++||....
T Consensus 144 aDllVInK~DLa~~v~~dlevm~~da~~--~--np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 144 ADLLVINKTDLAPYVGADLEVMARDAKE--V--NPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred eeEEEEehHHhHHHhCccHHHHHHHHHH--h--CCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 3478899999965543 3444443331 1 3456889999999999999999998754
No 305
>KOG1493|consensus
Probab=96.04 E-value=0.0017 Score=48.45 Aligned_cols=52 Identities=27% Similarity=0.505 Sum_probs=40.6
Q ss_pred eecccccccccc-------CCCCcEEe-cCCCcchhhhHhhcccC-CCccCCCCCCCcccC
Q psy15732 67 ECRVCEDIFLTQ-------GDKVPRLL-HCGHTVCLACLLRLPIK-DDTITCPFDRQPTPV 118 (550)
Q Consensus 67 ~C~iC~~~~~~~-------~~~~P~~l-~CgH~fC~~Cl~~~~~~-~~~~~CP~Cr~~~~~ 118 (550)
+|.||.-.|... ||..|.++ -|.|.|-..||.+|+.. +..-.||.||+....
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 788888777641 45568887 79999999999999873 344579999998754
No 306
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=96.04 E-value=0.0052 Score=54.02 Aligned_cols=44 Identities=20% Similarity=0.163 Sum_probs=28.3
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCC
Q psy15732 480 KDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEG 529 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~g 529 (550)
.++|+++++||+||.......+..+.+. .....++.+||++|.+
T Consensus 41 ~~k~~iivlNK~DL~~~~~~~~~~~~~~------~~~~~ii~iSa~~~~~ 84 (141)
T cd01857 41 PRKKNILLLNKADLLTEEQRKAWAEYFK------KEGIVVVFFSALKENA 84 (141)
T ss_pred CCCcEEEEEechhcCCHHHHHHHHHHHH------hcCCeEEEEEecCCCc
Confidence 4689999999999953221222223332 2235789999998865
No 307
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=96.03 E-value=0.016 Score=59.75 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=42.3
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHHh
Q psy15732 480 KDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~~ 544 (550)
.+.|+++|.||.||........+ + + ..+..++.+||+||+||+..-+.|...+...
T Consensus 323 ~~~~~i~v~NK~DL~~~~~~~~~-~-~-------~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 323 KKKPIIVVLNKADLVSKIELESE-K-L-------ANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred cCCCEEEEEechhcccccccchh-h-c-------cCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 56899999999999876543333 1 1 2233678899999999999999988877554
No 308
>COG1159 Era GTPase [General function prediction only]
Probab=96.02 E-value=0.013 Score=56.82 Aligned_cols=88 Identities=13% Similarity=0.132 Sum_probs=57.1
Q ss_pred eEEEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCC-HHHHHHhcCCCcccCCCcEEEEEe
Q psy15732 444 EMRVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCET-VESITEAFDLYKLCCGRSWHIQAC 522 (550)
Q Consensus 444 ~~~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~-~~~i~~~~~l~~~~~~~~~~~~~~ 522 (550)
.+.++++.+|+.+.... -.+++-+.+.+ .+.|++++.||+|...... ...+.+.+... -....++++
T Consensus 85 dvDlilfvvd~~~~~~~-----~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~----~~f~~ivpi 152 (298)
T COG1159 85 DVDLILFVVDADEGWGP-----GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKL----LPFKEIVPI 152 (298)
T ss_pred cCcEEEEEEeccccCCc-----cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhh----CCcceEEEe
Confidence 45667777777643222 12333333333 4579999999999855433 23444444321 122389999
Q ss_pred cccCCCCHHHHHHHHHHHHHH
Q psy15732 523 NAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 523 SA~~g~gi~e~f~~l~~~~~~ 543 (550)
||++|.|++...+.|...+..
T Consensus 153 SA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 153 SALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred eccccCCHHHHHHHHHHhCCC
Confidence 999999999999999887754
No 309
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.95 E-value=0.011 Score=59.40 Aligned_cols=61 Identities=23% Similarity=0.321 Sum_probs=42.5
Q ss_pred EEEEecCCCCCCCC----CHHHHHHhcCCCcccCCCcE--EEEEecccCCCCHHHHHHHHHHHHHHhc
Q psy15732 484 LLLLANKQDIPGCE----TVESITEAFDLYKLCCGRSW--HIQACNAQSGEGLHEGLDWLSRQLIAAG 545 (550)
Q Consensus 484 ili~~NK~Dl~~~~----~~~~i~~~~~l~~~~~~~~~--~~~~~SA~~g~gi~e~f~~l~~~~~~~~ 545 (550)
-+||.||.|+.... ...++...+.+..-. ...| .++.+||++|.||++++++|.+.+..-.
T Consensus 197 DIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~-~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~ 263 (332)
T PRK09435 197 DLIVINKADGDNKTAARRAAAEYRSALRLLRPK-DPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALT 263 (332)
T ss_pred heEEeehhcccchhHHHHHHHHHHHHHhccccc-ccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 37999999986532 234555555542110 1123 7899999999999999999999876443
No 310
>KOG1645|consensus
Probab=95.90 E-value=0.0043 Score=61.63 Aligned_cols=55 Identities=24% Similarity=0.498 Sum_probs=46.3
Q ss_pred cceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 65 ALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 65 ~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
..+||||++-+...++|.-+.|.|||-|-.+|+++|+.......||.|..+....
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr 58 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKR 58 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHH
Confidence 4689999999997767667888999999999999999765677899998776543
No 311
>COG0218 Predicted GTPase [General function prediction only]
Probab=95.89 E-value=0.039 Score=50.62 Aligned_cols=59 Identities=12% Similarity=0.166 Sum_probs=43.0
Q ss_pred CCeEEEEecCCCCCCCC----CHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 481 DAALLLLANKQDIPGCE----TVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 481 ~~pili~~NK~Dl~~~~----~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
++|++|++||+|....- ....+.+.+.+... ...| ++..|+.++.||+++-..|.+.+.
T Consensus 135 ~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~--~~~~-~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 135 GIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPP--DDQW-VVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred CCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCC--ccce-EEEEecccccCHHHHHHHHHHHhh
Confidence 59999999999985431 23566666664322 3334 888999999999999888877664
No 312
>COG1160 Predicted GTPases [General function prediction only]
Probab=95.77 E-value=0.031 Score=57.44 Aligned_cols=61 Identities=20% Similarity=0.201 Sum_probs=42.9
Q ss_pred CCCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
.+.|++||.||-|+... ...+++...+.. .+..-....++.+||++|.||.+.|+++....
T Consensus 288 ~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~-~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~ 350 (444)
T COG1160 288 AGRGIVIVVNKWDLVEEDEATMEEFKKKLRR-KLPFLDFAPIVFISALTGQGLDKLFEAIKEIY 350 (444)
T ss_pred cCCCeEEEEEccccCCchhhHHHHHHHHHHH-HhccccCCeEEEEEecCCCChHHHHHHHHHHH
Confidence 46899999999998543 444554444431 11012345789999999999999999997754
No 313
>COG1084 Predicted GTPase [General function prediction only]
Probab=95.76 E-value=2.4 Score=42.11 Aligned_cols=86 Identities=20% Similarity=0.195 Sum_probs=54.7
Q ss_pred EEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccC
Q psy15732 447 VVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQS 526 (550)
Q Consensus 447 ~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~ 526 (550)
++++.+|+.... .-++++-...++++... -+.|+++|.||+|+.+....+++...+.... ......+++..
T Consensus 250 ~IlF~~D~Se~c-gy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~-----~~~~~~~~~~~ 320 (346)
T COG1084 250 VILFLFDPSETC-GYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVLEEG-----GEEPLKISATK 320 (346)
T ss_pred eEEEEEcCcccc-CCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHHhhc-----cccccceeeee
Confidence 455666664221 34566656666666433 2389999999999976656677766654211 11234488899
Q ss_pred CCCHHHHHHHHHHHH
Q psy15732 527 GEGLHEGLDWLSRQL 541 (550)
Q Consensus 527 g~gi~e~f~~l~~~~ 541 (550)
|.|++.+-..+....
T Consensus 321 ~~~~d~~~~~v~~~a 335 (346)
T COG1084 321 GCGLDKLREEVRKTA 335 (346)
T ss_pred hhhHHHHHHHHHHHh
Confidence 999998877666553
No 314
>PRK01889 GTPase RsgA; Reviewed
Probab=95.75 E-value=0.014 Score=59.80 Aligned_cols=52 Identities=31% Similarity=0.371 Sum_probs=37.3
Q ss_pred CCCeEEEEecCCCCCCCCCHHH-HHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCETVES-ITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLS 538 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~~~~-i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~ 538 (550)
.++|.+||.||+||.+. .++ +.....+ ...+.++.+||++|.|+++...||.
T Consensus 141 ~~i~piIVLNK~DL~~~--~~~~~~~~~~~-----~~g~~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 141 SGAEPVIVLTKADLCED--AEEKIAEVEAL-----APGVPVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred cCCCEEEEEEChhcCCC--HHHHHHHHHHh-----CCCCcEEEEECCCCccHHHHHHHhh
Confidence 46788899999999543 222 2222222 2346889999999999999999985
No 315
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=95.70 E-value=0.013 Score=65.85 Aligned_cols=53 Identities=11% Similarity=0.172 Sum_probs=39.8
Q ss_pred CCeEEEEecCCCCCCCC----CHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 481 DAALLLLANKQDIPGCE----TVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 481 ~~pili~~NK~Dl~~~~----~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
++|++++.||+|+.+.. +.+.+.+.++ ..++++||++|+||++.++.+.+...
T Consensus 112 giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG---------~pVvpiSA~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 112 GIPCIVALNMLDIAEKQNIRIDIDALSARLG---------CPVIPLVSTRGRGIEALKLAIDRHQA 168 (772)
T ss_pred CCCEEEEEEchhhhhccCcHHHHHHHHHHhC---------CCEEEEEeecCCCHHHHHHHHHHhhh
Confidence 58999999999985332 2233334333 46899999999999999999987653
No 316
>KOG2817|consensus
Probab=95.67 E-value=0.011 Score=58.89 Aligned_cols=55 Identities=22% Similarity=0.457 Sum_probs=43.9
Q ss_pred cCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccC-CCccCCCCCCCcccC
Q psy15732 62 LELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIK-DDTITCPFDRQPTPV 118 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~-~~~~~CP~Cr~~~~~ 118 (550)
+...+.|||=.+.-.+. ..|+.|.|||.+|..=+.+...+ ...|+||.|-.....
T Consensus 331 fHSvF~CPVlKeqtsde--NPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~ 386 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDE--NPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLA 386 (394)
T ss_pred ccceeecccchhhccCC--CCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccCH
Confidence 56789999988887764 34999999999999999887653 235999999777654
No 317
>COG1160 Predicted GTPases [General function prediction only]
Probab=95.67 E-value=0.025 Score=58.07 Aligned_cols=82 Identities=23% Similarity=0.289 Sum_probs=52.0
Q ss_pred eEEEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEec
Q psy15732 444 EMRVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACN 523 (550)
Q Consensus 444 ~~~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~S 523 (550)
+..++++.+|+... +....+.+-+++. ..++|+++|+||+|-... .+.+.++..| .+ -.++++|
T Consensus 83 eADvilfvVD~~~G-----it~~D~~ia~~Lr---~~~kpviLvvNK~D~~~~--e~~~~efysl-G~-----g~~~~IS 146 (444)
T COG1160 83 EADVILFVVDGREG-----ITPADEEIAKILR---RSKKPVILVVNKIDNLKA--EELAYEFYSL-GF-----GEPVPIS 146 (444)
T ss_pred hCCEEEEEEeCCCC-----CCHHHHHHHHHHH---hcCCCEEEEEEcccCchh--hhhHHHHHhc-CC-----CCceEee
Confidence 34567777777531 2222333433333 145899999999997532 2333333332 11 1457799
Q ss_pred ccCCCCHHHHHHHHHHHH
Q psy15732 524 AQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 524 A~~g~gi~e~f~~l~~~~ 541 (550)
|.-|.||.+.++++...+
T Consensus 147 A~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 147 AEHGRGIGDLLDAVLELL 164 (444)
T ss_pred hhhccCHHHHHHHHHhhc
Confidence 999999999999999986
No 318
>KOG0462|consensus
Probab=95.63 E-value=0.015 Score=60.56 Aligned_cols=58 Identities=21% Similarity=0.310 Sum_probs=41.7
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHhcC-CCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 481 DAALLLLANKQDIPGCETVESITEAFD-LYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 481 ~~pili~~NK~Dl~~~~~~~~i~~~~~-l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
+..|+.|.||+|++.+- ++.+...+. +-. ...-.++.+|||+|.|++++|+-|.+.+.
T Consensus 177 ~L~iIpVlNKIDlp~ad-pe~V~~q~~~lF~---~~~~~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 177 GLAIIPVLNKIDLPSAD-PERVENQLFELFD---IPPAEVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred CCeEEEeeeccCCCCCC-HHHHHHHHHHHhc---CCccceEEEEeccCccHHHHHHHHHhhCC
Confidence 46788889999999873 344333332 211 22337888999999999999999988874
No 319
>KOG1490|consensus
Probab=95.60 E-value=1.1 Score=46.67 Aligned_cols=75 Identities=9% Similarity=0.082 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHH
Q psy15732 463 LPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQ 540 (550)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~ 540 (550)
+++-...++.+ .+-+.|.|++||.||+|+-+..+.++-.+.+- ..+..+..+.++.+|..+-+||-++=....+.
T Consensus 265 va~QvkLfhsI--KpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll-~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~ 339 (620)
T KOG1490|consen 265 VAAQVKLYHSI--KPLFANKVTILVLNKIDAMRPEDLDQKNQELL-QTIIDDGNVKVVQTSCVQEEGVMDVRTTACEA 339 (620)
T ss_pred HHHHHHHHHHh--HHHhcCCceEEEeecccccCccccCHHHHHHH-HHHHhccCceEEEecccchhceeeHHHHHHHH
Confidence 33333444555 34567899999999999955433332221111 11113556899999999999998865554443
No 320
>KOG4172|consensus
Probab=95.51 E-value=0.0026 Score=44.13 Aligned_cols=46 Identities=39% Similarity=0.741 Sum_probs=37.8
Q ss_pred ceeccccccccccCCCCcEEecCCCc-chhhhHhhcccCCCccCCCCCCCccc
Q psy15732 66 LECRVCEDIFLTQGDKVPRLLHCGHT-VCLACLLRLPIKDDTITCPFDRQPTP 117 (550)
Q Consensus 66 l~C~iC~~~~~~~~~~~P~~l~CgH~-fC~~Cl~~~~~~~~~~~CP~Cr~~~~ 117 (550)
-.|.||++.-. + .++..|||- .|..|-.+.|.. ..-.||.||.++.
T Consensus 8 dECTICye~pv---d--sVlYtCGHMCmCy~Cg~rl~~~-~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPV---D--SVLYTCGHMCMCYACGLRLKKA-LHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcc---h--HHHHHcchHHhHHHHHHHHHHc-cCCcCcchhhHHH
Confidence 58999999888 7 777799996 599999888874 4457999998753
No 321
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.38 E-value=0.021 Score=48.15 Aligned_cols=35 Identities=29% Similarity=0.325 Sum_probs=23.9
Q ss_pred CccchhhHHHHH---HHHHHHhhccCcCCCeEEEEecCCC
Q psy15732 456 DSADKERLPEAL---AELTKLIAEKELKDAALLLLANKQD 492 (550)
Q Consensus 456 D~~d~~~~~~~~---~~l~~~~~~~~~~~~pili~~NK~D 492 (550)
|.+|+++|+.+. .||..+... ..++|++|+|||.|
T Consensus 82 D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 82 DLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp ECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred cCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 667777787764 455555332 35699999999998
No 322
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=95.32 E-value=0.014 Score=61.54 Aligned_cols=58 Identities=19% Similarity=0.170 Sum_probs=40.2
Q ss_pred CeEEEEecCCCCCCCCC----HHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 482 AALLLLANKQDIPGCET----VESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 482 ~pili~~NK~Dl~~~~~----~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
.|++|+.||+|+.+... .+++.+.+.- .. ...+.++++||++|+||++.++.|.+.+.
T Consensus 172 ~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~--~~-~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 172 KHIIILQNKIDLVKEAQAQDQYEEIRNFVKG--TI-ADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred CcEEEEEecccccCHHHHHHHHHHHHHHHHh--hc-cCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 36899999999964321 2233333321 10 24678999999999999999999987553
No 323
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.29 E-value=0.013 Score=40.36 Aligned_cols=45 Identities=24% Similarity=0.640 Sum_probs=22.7
Q ss_pred eccccccccccCCCCcEEe--cCCCcchhhhHhhcccCCCccCCCCCCCcc
Q psy15732 68 CRVCEDIFLTQGDKVPRLL--HCGHTVCLACLLRLPIKDDTITCPFDRQPT 116 (550)
Q Consensus 68 C~iC~~~~~~~~~~~P~~l--~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~ 116 (550)
||+|.+.+..+ + -.++ +||+-+|+.|....... ..-.||-||++.
T Consensus 1 cp~C~e~~d~~-d--~~~~PC~Cgf~IC~~C~~~i~~~-~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDET-D--KDFYPCECGFQICRFCYHDILEN-EGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CC-C--TT--SSTTS----HHHHHHHTTS-S-SB-TTT--B-
T ss_pred CCCcccccccC-C--CccccCcCCCcHHHHHHHHHHhc-cCCCCCCCCCCC
Confidence 78898888754 3 2333 89999999999988763 345699999874
No 324
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=95.24 E-value=0.035 Score=52.29 Aligned_cols=51 Identities=18% Similarity=0.187 Sum_probs=30.4
Q ss_pred CeEEEEecCCCCCCCCC--HHHHHHhcC--CCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 482 AALLLLANKQDIPGCET--VESITEAFD--LYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 482 ~pili~~NK~Dl~~~~~--~~~i~~~~~--l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
.|++|++||+|+.+... .+++...+. +..+ ....+.++++||++|.||.+.
T Consensus 131 ~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 131 RHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKL-GIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred CcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHc-CCCCceEEEEeCCCCCCCccC
Confidence 35788999999965321 112222221 1111 123467999999999999863
No 325
>KOG4265|consensus
Probab=95.21 E-value=0.011 Score=58.19 Aligned_cols=49 Identities=35% Similarity=0.617 Sum_probs=40.3
Q ss_pred CCcceeccccccccccCCCCcEEecCCCcc-hhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLLHCGHTV-CLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l~CgH~f-C~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
+..-.|-||+...+ | -++|||-|.. |..|.....- ..-.||+||+.+..
T Consensus 288 ~~gkeCVIClse~r---d--t~vLPCRHLCLCs~Ca~~Lr~--q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESR---D--TVVLPCRHLCLCSGCAKSLRY--QTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCc---c--eEEecchhhehhHhHHHHHHH--hhcCCCccccchHh
Confidence 34689999999999 8 8999999974 9999988753 34469999998753
No 326
>KOG4275|consensus
Probab=95.06 E-value=0.0046 Score=58.64 Aligned_cols=42 Identities=38% Similarity=0.705 Sum_probs=35.3
Q ss_pred cceeccccccccccCCCCcEEecCCCcc-hhhhHhhcccCCCccCCCCCCCccc
Q psy15732 65 ALECRVCEDIFLTQGDKVPRLLHCGHTV-CLACLLRLPIKDDTITCPFDRQPTP 117 (550)
Q Consensus 65 ~l~C~iC~~~~~~~~~~~P~~l~CgH~f-C~~Cl~~~~~~~~~~~CP~Cr~~~~ 117 (550)
...|.||++... | -+.|+|||.. |..|-.++- .||+||+.+.
T Consensus 300 ~~LC~ICmDaP~---D--CvfLeCGHmVtCt~CGkrm~------eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPR---D--CVFLECGHMVTCTKCGKRMN------ECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCc---c--eEEeecCcEEeehhhccccc------cCchHHHHHH
Confidence 667999999999 9 9999999976 888876653 5999998753
No 327
>KOG1144|consensus
Probab=94.93 E-value=0.079 Score=57.15 Aligned_cols=31 Identities=29% Similarity=0.298 Sum_probs=26.7
Q ss_pred CCcEEEEEecccCCCCHHHHHHHHHHHHHHh
Q psy15732 514 GRSWHIQACNAQSGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 514 ~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~~ 544 (550)
.+.+.+++|||.+|+||-+.+-||++.-+++
T Consensus 659 ~~~vsiVPTSA~sGeGipdLl~llv~ltQk~ 689 (1064)
T KOG1144|consen 659 GETVSIVPTSAISGEGIPDLLLLLVQLTQKT 689 (1064)
T ss_pred cceEEeeecccccCCCcHHHHHHHHHHHHHH
Confidence 4568899999999999999999998876553
No 328
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.87 E-value=0.012 Score=56.13 Aligned_cols=58 Identities=24% Similarity=0.346 Sum_probs=39.2
Q ss_pred eEEEEecCCCCCCCC-CHHHHHHhcCCCcccCCC--cEEEEEecccCCCCHHHHHHHHHHHH
Q psy15732 483 ALLLLANKQDIPGCE-TVESITEAFDLYKLCCGR--SWHIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 483 pili~~NK~Dl~~~~-~~~~i~~~~~l~~~~~~~--~~~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
+=++|.||.|++++. ...++...+.+..-. .. ..+++.|||.+|+||++.++.|.+.-
T Consensus 169 aDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~-~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 169 ADIFVVNKADRPGADRTVRDLRSMLHLLRER-EDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp -SEEEEE--SHHHHHHHHHHHHHHHHHCSTS-CTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ccEEEEeCCChHHHHHHHHHHHHHHhhcccc-ccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 337889999987653 456667766643321 23 34899999999999999999998754
No 329
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=94.86 E-value=0.076 Score=51.13 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=23.8
Q ss_pred CcEEEEEecccCCCCHHHHHHHHHHHH
Q psy15732 515 RSWHIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 515 ~~~~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
.-+++|..||.++.||...++.|...+
T Consensus 208 ~~~Pv~~gsa~~~~Gv~~ll~~~~~~~ 234 (237)
T cd04168 208 KVFPVYHGSALKGIGIEELLEGITKLF 234 (237)
T ss_pred CeEEEEEccccCCcCHHHHHHHHHHhc
Confidence 457899999999999999999998765
No 330
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=94.84 E-value=0.076 Score=49.46 Aligned_cols=51 Identities=18% Similarity=0.183 Sum_probs=31.8
Q ss_pred CCe-EEEEecCCCCCCCCC-----HHHHHHhcCCCcccCCCcEEEEEecccCCCCHHH
Q psy15732 481 DAA-LLLLANKQDIPGCET-----VESITEAFDLYKLCCGRSWHIQACNAQSGEGLHE 532 (550)
Q Consensus 481 ~~p-ili~~NK~Dl~~~~~-----~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e 532 (550)
++| ++|+.||+|+..... .+++.+.+....+ ....+.++++||++|.|+.+
T Consensus 117 ~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~-~~~~v~iipiSa~~g~n~~~ 173 (195)
T cd01884 117 GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGF-DGDNTPIVRGSALKALEGDD 173 (195)
T ss_pred CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcc-cccCCeEEEeeCccccCCCC
Confidence 466 778899999853211 1234443331122 13468899999999998743
No 331
>KOG0827|consensus
Probab=94.82 E-value=0.014 Score=57.71 Aligned_cols=49 Identities=24% Similarity=0.452 Sum_probs=34.8
Q ss_pred ceeccccccccccCCCCcEEe-cCCCcchhhhHhhcccCCCc-cCCCCCCCcc
Q psy15732 66 LECRVCEDIFLTQGDKVPRLL-HCGHTVCLACLLRLPIKDDT-ITCPFDRQPT 116 (550)
Q Consensus 66 l~C~iC~~~~~~~~~~~P~~l-~CgH~fC~~Cl~~~~~~~~~-~~CP~Cr~~~ 116 (550)
..|.||.+.+....+ --.+ .|||+|...|+..|+..... ..||.|+-..
T Consensus 5 A~C~Ic~d~~p~~~~--l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHICIDGRPNDHE--LGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred ceeeEeccCCccccc--cccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 579999666652111 2223 59999999999999985444 5899999443
No 332
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=94.77 E-value=0.035 Score=55.82 Aligned_cols=57 Identities=19% Similarity=0.181 Sum_probs=40.9
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH-HHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD-WLSRQLIA 543 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~-~l~~~~~~ 543 (550)
...|+++++||.|+... +++.+.+.. ......++++||+.|.|+.+..+ .|.+.+..
T Consensus 213 t~KPvI~VlNK~Dl~~~---~~~~~~l~~----~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 213 RSKPMVIAANKADIPDA---ENNISKLRL----KYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred cCCcEEEEEEHHHccCh---HHHHHHHHh----hCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 34799999999998532 333333321 12345799999999999999987 78887643
No 333
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=94.67 E-value=0.03 Score=42.36 Aligned_cols=51 Identities=27% Similarity=0.513 Sum_probs=37.0
Q ss_pred eeccccccccccCCCCcEEe-cCCCcchhhhHhhcccCCCccCCCCCCCcccCCC
Q psy15732 67 ECRVCEDIFLTQGDKVPRLL-HCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGY 120 (550)
Q Consensus 67 ~C~iC~~~~~~~~~~~P~~l-~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~ 120 (550)
.|+-|..-... ++..|+.- -|.|.|-..||.+|+.. .-.||.||++..+..
T Consensus 33 ~C~eCq~~~~~-~~eC~v~wG~CnHaFH~HCI~rWL~T--k~~CPld~q~w~~~~ 84 (88)
T COG5194 33 TCPECQFGMTP-GDECPVVWGVCNHAFHDHCIYRWLDT--KGVCPLDRQTWVLAD 84 (88)
T ss_pred cCcccccCCCC-CCcceEEEEecchHHHHHHHHHHHhh--CCCCCCCCceeEEec
Confidence 45555543322 25557776 89999999999999984 446999999987654
No 334
>KOG1812|consensus
Probab=94.67 E-value=0.015 Score=59.80 Aligned_cols=131 Identities=19% Similarity=0.381 Sum_probs=72.9
Q ss_pred cceeccccccccccCCCCcEEecCCCcchhhhHhhccc----CCCccCCCCCCCcccCCCCCccCccccHHHHHHHHHHH
Q psy15732 65 ALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPI----KDDTITCPFDRQPTPVGYSGVWGLKKNFALLELIEKIQ 140 (550)
Q Consensus 65 ~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~----~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~~~~ 140 (550)
..+|.||...+... ++.-.++.|+|-||..|+.+.+. .+..+.||.-+-+..++......|.++ .+.++.+...
T Consensus 146 ~~~C~iC~~e~~~~-~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c~~llt~-kl~e~~e~~~ 223 (384)
T KOG1812|consen 146 KEECGICFVEDPEA-EDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESCRKLLTP-KLREMWEQRL 223 (384)
T ss_pred cccCccCccccccH-hhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHHhhhcCH-HHHHHHHHHH
Confidence 56899999555422 11134558999999999998766 356778997444444444334445444 3333333322
Q ss_pred hccccccccCCcchhhhhcccccccccccCCCCcc--------ccccccccccchhhhhHhhhhhcCCCcccCCcccc
Q psy15732 141 TNDEKATESIPLFSAELHIKCDFSLQLHIKCDEDE--------SHIAVLYCTVCASHLCEQCASDSHATRTLQKHRRI 210 (550)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~C~~~~--------~~~A~~~C~~C~~~lC~~C~~~h~~~~~~~~H~~~ 210 (550)
...- . .......|.+ ..|..+. ......-|..|...+|-.|...-|.......++..
T Consensus 224 ~e~~--i------~~~~~~ycp~-----~~C~~l~~~~el~~~~~~~~~~C~~C~~~fCv~C~~~wh~~~sC~eykk~ 288 (384)
T KOG1812|consen 224 KEEV--I------PSLDRVYCPY-----PRCSSLMSKTELSSEVKSKRRPCVKCHELFCVKCKVPWHANLSCEEYKKL 288 (384)
T ss_pred HHHh--h------hhhhcccCCC-----CCchHhhhhhhhccchhhcccccccCCCceeecCCCcCCCCCCHHHHHHh
Confidence 2110 0 0111113322 2243221 22344569999999999999977775554444433
No 335
>COG1162 Predicted GTPases [General function prediction only]
Probab=94.67 E-value=0.062 Score=52.68 Aligned_cols=59 Identities=20% Similarity=0.248 Sum_probs=41.3
Q ss_pred CcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHH
Q psy15732 478 ELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQ 540 (550)
Q Consensus 478 ~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~ 540 (550)
...++..+|+.||+||-+...... .+.+.. + ..-.+.++.+||+++.|++++..+|...
T Consensus 107 e~~gi~pvIvlnK~DL~~~~~~~~-~~~~~~--y-~~~gy~v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 107 EAGGIEPVIVLNKIDLLDDEEAAV-KELLRE--Y-EDIGYPVLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred HHcCCcEEEEEEccccCcchHHHH-HHHHHH--H-HhCCeeEEEecCcCcccHHHHHHHhcCC
Confidence 345676677799999976544332 222221 1 1557899999999999999999998764
No 336
>KOG4739|consensus
Probab=94.54 E-value=0.02 Score=53.54 Aligned_cols=47 Identities=28% Similarity=0.593 Sum_probs=35.8
Q ss_pred cceeccccccccccCCCCcEEe-cCCCcchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 65 ALECRVCEDIFLTQGDKVPRLL-HCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 65 ~l~C~iC~~~~~~~~~~~P~~l-~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
...|..|...-. . + |..| .|+|.||..|....... .||.|++.+...
T Consensus 3 ~VhCn~C~~~~~-~-~--~f~LTaC~HvfC~~C~k~~~~~----~C~lCkk~ir~i 50 (233)
T KOG4739|consen 3 FVHCNKCFRFPS-Q-D--PFFLTACRHVFCEPCLKASSPD----VCPLCKKSIRII 50 (233)
T ss_pred eEEeccccccCC-C-C--ceeeeechhhhhhhhcccCCcc----ccccccceeeee
Confidence 467888877666 2 5 7666 99999999999776432 699999996543
No 337
>PLN00043 elongation factor 1-alpha; Provisional
Probab=94.47 E-value=0.029 Score=59.29 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=33.8
Q ss_pred CCC-eEEEEecCCCCCC-CCC-------HHHHHHhcCCCcccCCCcEEEEEecccCCCCHHH
Q psy15732 480 KDA-ALLLLANKQDIPG-CET-------VESITEAFDLYKLCCGRSWHIQACNAQSGEGLHE 532 (550)
Q Consensus 480 ~~~-pili~~NK~Dl~~-~~~-------~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e 532 (550)
.++ +++|+.||+|+.. ..+ .+++...+.-..+. ...+.|+++||++|+||.+
T Consensus 143 ~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~-~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 143 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYN-PDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred cCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCC-cccceEEEEeccccccccc
Confidence 346 4788899999862 111 34455544422231 3457899999999999964
No 338
>KOG1941|consensus
Probab=94.44 E-value=0.013 Score=57.78 Aligned_cols=63 Identities=22% Similarity=0.354 Sum_probs=45.2
Q ss_pred CcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCccc--CCCCCccCcc
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTP--VGYSGVWGLK 127 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~--~~~~~~~~l~ 127 (550)
-+|.|..|.+.+-.. +..---|||.|.|...|+..++.+....+||.||+-.. ..++.+...|
T Consensus 364 ~~L~Cg~CGe~~Glk-~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrSs~~rpgfvgs~~ 428 (518)
T KOG1941|consen 364 TELYCGLCGESIGLK-NERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRSSMKRPGFVGSVP 428 (518)
T ss_pred HhhhhhhhhhhhcCC-cccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHhhccCCCCcCCCc
Confidence 468999999999863 11123359999999999999988777889999994433 3344444433
No 339
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=94.43 E-value=0.025 Score=47.51 Aligned_cols=51 Identities=25% Similarity=0.540 Sum_probs=44.2
Q ss_pred CcceeccccccccccCCCCcEEe----cCCCcchhhhHhhcccC-CCccCCCCCCCcccCC
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLL----HCGHTVCLACLLRLPIK-DDTITCPFDRQPTPVG 119 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l----~CgH~fC~~Cl~~~~~~-~~~~~CP~Cr~~~~~~ 119 (550)
...+|.||.+... + ++.| -||-++|..|....|.. .....||.|++.+...
T Consensus 79 ~lYeCnIC~etS~---e--e~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSA---E--ERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccc---h--hhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 5789999999999 8 8888 59999999999999983 4567899999988764
No 340
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=94.41 E-value=0.13 Score=55.61 Aligned_cols=26 Identities=19% Similarity=-0.014 Sum_probs=23.5
Q ss_pred EEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 517 WHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 517 ~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
+++|..||++|.||.+.++.|...+.
T Consensus 249 ~PV~~GSA~~n~Gv~~LLd~i~~~~P 274 (526)
T PRK00741 249 TPVFFGSALNNFGVQEFLDAFVEWAP 274 (526)
T ss_pred EEEEEeecccCcCHHHHHHHHHHHCC
Confidence 66999999999999999999998774
No 341
>KOG0082|consensus
Probab=94.40 E-value=1.5 Score=44.27 Aligned_cols=84 Identities=18% Similarity=0.239 Sum_probs=63.0
Q ss_pred hhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC-----------------CCCHHHHHHhcC-----CCcccCCCcE
Q psy15732 460 KERLPEALAELTKLIAEKELKDAALLLLANKQDIPG-----------------CETVESITEAFD-----LYKLCCGRSW 517 (550)
Q Consensus 460 ~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~-----------------~~~~~~i~~~~~-----l~~~~~~~~~ 517 (550)
..|+.++..-++.+.+++-..+.+|++..||.||-. .-+.++...++. +..- ..+.+
T Consensus 241 ~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~-~~k~i 319 (354)
T KOG0082|consen 241 TNRMHESLKLFESICNNKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKN-KDKKI 319 (354)
T ss_pred hhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcc-cCCcc
Confidence 578999999999999999999999999999999921 112233322222 1111 13678
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHh
Q psy15732 518 HIQACNAQSGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 518 ~~~~~SA~~g~gi~e~f~~l~~~~~~~ 544 (550)
.+..|.|.+-.+|+.+|+...+.+.++
T Consensus 320 y~h~T~AtDT~nv~~vf~av~d~Ii~~ 346 (354)
T KOG0082|consen 320 YVHFTCATDTQNVQFVFDAVTDTIIQN 346 (354)
T ss_pred eEEEEeeccHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999998887653
No 342
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=94.34 E-value=3.4 Score=36.34 Aligned_cols=111 Identities=11% Similarity=0.059 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHH---HHHHHHHHHHHHHHHH
Q psy15732 268 EIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVH---AYFNHLRESLLVQEAA 344 (550)
Q Consensus 268 ~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~---~~f~~l~~~L~~~e~~ 344 (550)
.+....+...+...+..|+..+..+..........+..+.. ........+. ..+.+....|+++-..
T Consensus 24 ~~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~----------~~~~~q~~~~~n~~i~~~~s~~l~~~~~~ 93 (146)
T PF08702_consen 24 QDFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKD----------SLRPRQKQAKPNDNIYNQYSKSLRKMIIY 93 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH----------HHhccccccCCcccHHHHHHHHHHHHHHH
Confidence 45667777778888888888888888877777777777666 4444443333 2333444444444434
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy15732 345 ATSAVDMFVRERLGCLVQLHDDMGFWLQEVAKLYLKCEQMILQD 388 (550)
Q Consensus 345 ll~~l~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~e~~l~~~ 388 (550)
.++.+.......++.|+..+......+.+|+..+...++.++.+
T Consensus 94 ~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~~Ck~p 137 (146)
T PF08702_consen 94 ILETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQQERYCKEP 137 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 55666666677778888888888888888888888887777664
No 343
>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
Probab=94.31 E-value=0.028 Score=37.10 Aligned_cols=31 Identities=29% Similarity=0.637 Sum_probs=26.3
Q ss_pred CCCCccccccccccccchhhhhHhhhhhcCC
Q psy15732 170 KCDEDESHIAVLYCTVCASHLCEQCASDSHA 200 (550)
Q Consensus 170 ~C~~~~~~~A~~~C~~C~~~lC~~C~~~h~~ 200 (550)
.|+.+...++..||.+|...+|..|....|+
T Consensus 2 ~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~ 32 (39)
T cd00021 2 LCDEHGEEPLSLFCETDRALLCVDCDLSVHS 32 (39)
T ss_pred CCCccCCcceEEEeCccChhhhhhcChhhcC
Confidence 3777777789999999999999999876554
No 344
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.20 E-value=0.045 Score=53.22 Aligned_cols=60 Identities=23% Similarity=0.398 Sum_probs=43.8
Q ss_pred EEEEecCCCCCCC-CCHHHHHHhcCCCc-ccCCCcE--EEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 484 LLLLANKQDIPGC-ETVESITEAFDLYK-LCCGRSW--HIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 484 ili~~NK~Dl~~~-~~~~~i~~~~~l~~-~~~~~~~--~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
=|+|.||.|++++ ....++...+.+.. ......| .++.|||.+|+||++.++.|.+....
T Consensus 192 Di~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 192 DIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred heeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence 3788999998776 34566666666543 1123444 58999999999999999999886643
No 345
>KOG1423|consensus
Probab=94.15 E-value=0.15 Score=49.59 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=23.4
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 518 HIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 518 ~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
.+|.+||++|+||++.=+||..++..
T Consensus 247 ~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 247 RVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred eEEEEecccccCHHHHHHHHHhcCCC
Confidence 58999999999999999999987643
No 346
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.04 E-value=0.081 Score=51.65 Aligned_cols=52 Identities=25% Similarity=0.330 Sum_probs=40.6
Q ss_pred cCCcceeccccccccccCCCCc-EEe-cCCCcchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 62 LELALECRVCEDIFLTQGDKVP-RLL-HCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~~~P-~~l-~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
-...+.|||....|. .+.+ +.| +|||+|+..++.... ....||.|..++...
T Consensus 110 ~~~~~~CPvt~~~~~---~~~~fv~l~~cG~V~s~~alke~k---~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 110 SEGRFICPVTGKEFN---GKHKFVYLRPCGCVFSEKALKELK---KSKKCPVCGKPFTEE 163 (260)
T ss_pred CCceeECCCCCcccC---CceeEEEEcCCCCEeeHHHHHhhc---ccccccccCCccccC
Confidence 356799999999997 4334 334 999999999999884 234599999998854
No 347
>KOG3002|consensus
Probab=93.93 E-value=0.041 Score=54.24 Aligned_cols=58 Identities=28% Similarity=0.549 Sum_probs=42.9
Q ss_pred cCCcceeccccccccccCCCCcEEecC--CCcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHHHH
Q psy15732 62 LELALECRVCEDIFLTQGDKVPRLLHC--GHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELIEK 138 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~~~P~~l~C--gH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~~ 138 (550)
.-+.+.||+|...+. |-+..| ||..|..|-.+.. ..||.||.++.. ..++.+..+++.
T Consensus 45 ~~~lleCPvC~~~l~------~Pi~QC~nGHlaCssC~~~~~-----~~CP~Cr~~~g~--------~R~~amEkV~e~ 104 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLS------PPIFQCDNGHLACSSCRTKVS-----NKCPTCRLPIGN--------IRCRAMEKVAEA 104 (299)
T ss_pred chhhccCchhhccCc------ccceecCCCcEehhhhhhhhc-----ccCCcccccccc--------HHHHHHHHHHHh
Confidence 457899999999999 445555 8999999997643 369999988752 346666655544
No 348
>PRK12736 elongation factor Tu; Reviewed
Probab=93.92 E-value=0.15 Score=53.15 Aligned_cols=61 Identities=18% Similarity=0.206 Sum_probs=38.5
Q ss_pred CCe-EEEEecCCCCCCCCC-----HHHHHHhcCCCcccCCCcEEEEEecccCCC--------CHHHHHHHHHHHHH
Q psy15732 481 DAA-LLLLANKQDIPGCET-----VESITEAFDLYKLCCGRSWHIQACNAQSGE--------GLHEGLDWLSRQLI 542 (550)
Q Consensus 481 ~~p-ili~~NK~Dl~~~~~-----~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~--------gi~e~f~~l~~~~~ 542 (550)
++| ++|+.||+|+.+... .+++.+.+....+. ...+.++++||++|. |+.++++.|.+.+.
T Consensus 127 g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~-~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 127 GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP-GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC-cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 577 678899999963211 12334433322221 235789999999994 57777777776653
No 349
>KOG0828|consensus
Probab=93.87 E-value=0.023 Score=57.87 Aligned_cols=55 Identities=27% Similarity=0.506 Sum_probs=39.2
Q ss_pred cCCcceecccccccccc--C-C---------CCcEEecCCCcchhhhHhhcccCCCccCCCCCCCccc
Q psy15732 62 LELALECRVCEDIFLTQ--G-D---------KVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTP 117 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~--~-~---------~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~ 117 (550)
.+....|+||+.....- + + |.-+..||.|.|..+|+.+|++. ....||.||.+++
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~-ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDT-YKLICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhh-hcccCCccCCCCC
Confidence 34567899999876531 0 1 11223499999999999999873 4568999998864
No 350
>KOG1428|consensus
Probab=93.80 E-value=0.043 Score=62.49 Aligned_cols=52 Identities=23% Similarity=0.367 Sum_probs=35.3
Q ss_pred CcceeccccccccccCCCCcEEecCCCcchhhhHhhccc----C----CCccCCCCCCCccc
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPI----K----DDTITCPFDRQPTP 117 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~----~----~~~~~CP~Cr~~~~ 117 (550)
.+-.|-||+-.--.. - ..+.|.|+|.|...|.+..++ + -+.+.||.|..++.
T Consensus 3485 ~DDmCmICFTE~L~A-A-P~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSA-A-PAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred cCceEEEEehhhhCC-C-cceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 345788887554421 2 136689999999999877554 2 13568999987764
No 351
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.74 E-value=0.022 Score=62.39 Aligned_cols=56 Identities=18% Similarity=0.398 Sum_probs=43.8
Q ss_pred cCCcceeccccccccccCCCCcEEe--cCCCcchhhhHhhcccCCCccCCCCCCCccc
Q psy15732 62 LELALECRVCEDIFLTQGDKVPRLL--HCGHTVCLACLLRLPIKDDTITCPFDRQPTP 117 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~~~P~~l--~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~ 117 (550)
++..-.|+||...+...+...|-.. .|.|-|..+|+-+|+..++...||.||.+++
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 4566789999999884312334333 7999999999999999888889999997754
No 352
>KOG1571|consensus
Probab=93.73 E-value=0.022 Score=56.29 Aligned_cols=47 Identities=32% Similarity=0.559 Sum_probs=36.1
Q ss_pred cCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 62 LELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
......|.||.+.+. + .+.+||||..| |..-.. ....||.||+.+..
T Consensus 302 ~~~p~lcVVcl~e~~---~--~~fvpcGh~cc--ct~cs~---~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPK---S--AVFVPCGHVCC--CTLCSK---HLPQCPVCRQRIRL 348 (355)
T ss_pred cCCCCceEEecCCcc---c--eeeecCCcEEE--chHHHh---hCCCCchhHHHHHH
Confidence 345578999999999 8 99999999987 664332 34459999988653
No 353
>smart00336 BBOX B-Box-type zinc finger.
Probab=93.63 E-value=0.039 Score=37.04 Aligned_cols=31 Identities=32% Similarity=0.821 Sum_probs=26.4
Q ss_pred cCCCCccccccccccccchhhhhHhhhhhcC
Q psy15732 169 IKCDEDESHIAVLYCTVCASHLCEQCASDSH 199 (550)
Q Consensus 169 ~~C~~~~~~~A~~~C~~C~~~lC~~C~~~h~ 199 (550)
..|..+....+..||.+|...+|..|....|
T Consensus 4 ~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H 34 (42)
T smart00336 4 PKCDSHGDEPAEFFCEECGALLCRTCDEAEH 34 (42)
T ss_pred CcCCCCCCCceEEECCCCCcccccccChhhc
Confidence 3477777788899999999999999998755
No 354
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=93.56 E-value=0.25 Score=53.48 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=45.8
Q ss_pred CCeEEEEecCCCCCC----CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHHh
Q psy15732 481 DAALLLLANKQDIPG----CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 481 ~~pili~~NK~Dl~~----~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~~ 544 (550)
++|++++.|+.|.-. .++.+.+++.++. +++++||++|.|++|..+.+.+....+
T Consensus 108 g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGv---------PVv~tvA~~g~G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 108 GIPMILALNMIDEAKKRGIRIDIEKLSKLLGV---------PVVPTVAKRGEGLEELKRAIIELAESK 166 (653)
T ss_pred CCCeEEEeccHhhHHhcCCcccHHHHHHHhCC---------CEEEEEeecCCCHHHHHHHHHHhcccc
Confidence 589999999999822 3688889998885 788999999999999999988765444
No 355
>KOG3039|consensus
Probab=93.17 E-value=0.086 Score=49.01 Aligned_cols=52 Identities=23% Similarity=0.399 Sum_probs=41.8
Q ss_pred CCcceeccccccccccCCCCcE-Ee-cCCCcchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 63 ELALECRVCEDIFLTQGDKVPR-LL-HCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~-~l-~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
...+.||+|.+.+. +-.|. .| +|||.||..|+++++. ....||+|..++...
T Consensus 219 s~ryiCpvtrd~Lt---Nt~~ca~Lr~sg~Vv~~ecvEklir--~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 219 SKRYICPVTRDTLT---NTTPCAVLRPSGHVVTKECVEKLIR--KDMVDPVTDKPLKDR 272 (303)
T ss_pred ccceecccchhhhc---CccceEEeccCCcEeeHHHHHHhcc--ccccccCCCCcCccc
Confidence 36789999999999 53353 23 9999999999999887 456799999887654
No 356
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=93.16 E-value=0.12 Score=43.72 Aligned_cols=58 Identities=12% Similarity=0.157 Sum_probs=35.9
Q ss_pred ccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHH
Q psy15732 457 SADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLH 531 (550)
Q Consensus 457 ~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~ 531 (550)
.++.++++.. |...++... ..++|+++++||.|+... ...++. ..++++||++|+|+.
T Consensus 56 ~~~~~s~~~~--~~~~i~~~~-k~dl~~~~~~nk~dl~~~~~~~~~~~--------------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 56 VDDRDSADNK--NVPEVLVGN-KSDLPILVGGNRDVLEEERQVATEEG--------------LEFAETSAKTPEEGE 115 (124)
T ss_pred ccCHHHHHHH--hHHHHHhcC-CCCCcEEEEeechhhHhhCcCCHHHH--------------HHHHHHhCCCcchhh
Confidence 3446666554 665554332 356899999999998432 122111 134459999999985
No 357
>KOG3800|consensus
Probab=92.94 E-value=0.067 Score=51.18 Aligned_cols=47 Identities=26% Similarity=0.563 Sum_probs=33.9
Q ss_pred eeccccccccccCCCCc--EEe--cCCCcchhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 67 ECRVCEDIFLTQGDKVP--RLL--HCGHTVCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 67 ~C~iC~~~~~~~~~~~P--~~l--~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
.||+|...-.. + | +++ +|||+.|.+|+..++.. +...||.|...+..
T Consensus 2 ~Cp~CKt~~Y~--n--p~lk~~in~C~H~lCEsCvd~iF~~-g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYL--N--PDLKLMINECGHRLCESCVDRIFSL-GPAQCPECMVILRK 52 (300)
T ss_pred CCcccccceec--C--ccceeeeccccchHHHHHHHHHHhc-CCCCCCcccchhhh
Confidence 58888654332 3 4 222 99999999999998874 45579999877543
No 358
>KOG4692|consensus
Probab=92.80 E-value=0.05 Score=53.10 Aligned_cols=48 Identities=17% Similarity=0.423 Sum_probs=40.1
Q ss_pred CCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCccc
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTP 117 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~ 117 (550)
.++-.||||.---. . .++.||+|--|..||.+.+- +...|=+|++.+.
T Consensus 420 sEd~lCpICyA~pi---~--Avf~PC~H~SC~~CI~qHlm--N~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPI---N--AVFAPCSHRSCYGCITQHLM--NCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccc---h--hhccCCCCchHHHHHHHHHh--cCCeeeEecceee
Confidence 46788999988777 7 88999999999999999876 4556889987765
No 359
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.75 E-value=0.069 Score=51.43 Aligned_cols=57 Identities=19% Similarity=0.370 Sum_probs=43.8
Q ss_pred hhccCCcceeccccccccccCCCCcEEecCCCcchhhhHhhccc-CCCccCCCCCCCccc
Q psy15732 59 ILILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPI-KDDTITCPFDRQPTP 117 (550)
Q Consensus 59 ~~~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~-~~~~~~CP~Cr~~~~ 117 (550)
...+...+.||+=.+.-.+. ..|++|.|||.+-..-+..... +...|.||.|-....
T Consensus 330 ~~hfHs~FiCPVlKe~~t~E--NpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~ 387 (396)
T COG5109 330 GRHFHSLFICPVLKELCTDE--NPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMSK 387 (396)
T ss_pred cccccceeeccccHhhhccc--CCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcchh
Confidence 34567889999988777753 3499999999999988877654 345789999965543
No 360
>KOG1001|consensus
Probab=92.70 E-value=0.057 Score=59.45 Aligned_cols=46 Identities=26% Similarity=0.630 Sum_probs=39.0
Q ss_pred ceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCccc
Q psy15732 66 LECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTP 117 (550)
Q Consensus 66 l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~ 117 (550)
..|.+|.+ .. . ++...|||.||..|+...+.......||.||..+.
T Consensus 455 ~~c~ic~~-~~---~--~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LD---S--FFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cc---c--ceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 89999999 55 6 88889999999999999988655558999987654
No 361
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=92.33 E-value=0.084 Score=55.86 Aligned_cols=52 Identities=12% Similarity=0.106 Sum_probs=33.5
Q ss_pred CCCe-EEEEecCCCCCCC----CC----HHHHHHhcCCCcccCCCcEEEEEecccCCCCHHH
Q psy15732 480 KDAA-LLLLANKQDIPGC----ET----VESITEAFDLYKLCCGRSWHIQACNAQSGEGLHE 532 (550)
Q Consensus 480 ~~~p-ili~~NK~Dl~~~----~~----~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e 532 (550)
.++| ++|+.||+|++.. .. .+++.+.+.-..+. ...+.|+++||.+|+||.+
T Consensus 143 ~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~-~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 143 LGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYN-PEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCC-cccceEEEeecccCCCccc
Confidence 3566 6789999996431 11 33444444322231 3468999999999999964
No 362
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.24 E-value=0.072 Score=51.88 Aligned_cols=51 Identities=29% Similarity=0.572 Sum_probs=40.0
Q ss_pred ccCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcc
Q psy15732 61 ILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPT 116 (550)
Q Consensus 61 ~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~ 116 (550)
..++...|.||-.-.. - --.+||+|-.|..|..+.-.--....||+||++.
T Consensus 57 tDEen~~C~ICA~~~T---Y--s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 57 TDEENMNCQICAGSTT---Y--SARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccccceeEEecCCce---E--EEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 4567889999999888 5 5677999999999997653322445799999875
No 363
>KOG1707|consensus
Probab=92.14 E-value=0.08 Score=55.82 Aligned_cols=77 Identities=13% Similarity=0.128 Sum_probs=46.6
Q ss_pred hhhHHHH-HHHHHHHhhcc-CcCCCeEEEEecCCCCCCCCCH--HH-HHHhcC-CCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 460 KERLPEA-LAELTKLIAEK-ELKDAALLLLANKQDIPGCETV--ES-ITEAFD-LYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 460 ~~~~~~~-~~~l~~~~~~~-~~~~~pili~~NK~Dl~~~~~~--~~-i~~~~~-l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
+++++.. ..||-.+.+-. ...++||++||||.|+....+. +. +.-.+. ...+ =..++|||++-.++.|+
T Consensus 92 ~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~Ei-----EtciecSA~~~~n~~e~ 166 (625)
T KOG1707|consen 92 ESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEI-----ETCIECSALTLANVSEL 166 (625)
T ss_pred hHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHH-----HHHHhhhhhhhhhhHhh
Confidence 3444333 47877664321 2367999999999999543222 32 111111 0011 14578999999999999
Q ss_pred HHHHHHHH
Q psy15732 534 LDWLSRQL 541 (550)
Q Consensus 534 f~~l~~~~ 541 (550)
|.+.-+.+
T Consensus 167 fYyaqKaV 174 (625)
T KOG1707|consen 167 FYYAQKAV 174 (625)
T ss_pred hhhhhhee
Confidence 98765543
No 364
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=92.11 E-value=0.27 Score=41.42 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=41.9
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHH
Q psy15732 481 DAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQ 540 (550)
Q Consensus 481 ~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~ 540 (550)
..|++=|..|.||....+.+-.+.+|.- -..-++|.+||.+..||++.+++|...
T Consensus 90 ~k~vIgvVTK~DLaed~dI~~~~~~L~e-----aGa~~IF~~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 90 VKKVIGVVTKADLAEDADISLVKRWLRE-----AGAEPIFETSAVDNQGVEELVDYLASL 144 (148)
T ss_pred ccceEEEEecccccchHhHHHHHHHHHH-----cCCcceEEEeccCcccHHHHHHHHHhh
Confidence 4578889999999865555555565542 224578999999999999999999753
No 365
>PRK13351 elongation factor G; Reviewed
Probab=92.08 E-value=0.63 Score=52.32 Aligned_cols=26 Identities=19% Similarity=0.043 Sum_probs=22.9
Q ss_pred EEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 517 WHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 517 ~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
++++..||++|.||+..++.|...+.
T Consensus 253 ~PV~~gSA~~~~Gv~~LLd~I~~~lP 278 (687)
T PRK13351 253 VPVLFGSALKNIGIEPLLDAVVDYLP 278 (687)
T ss_pred EEEEecccCcCccHHHHHHHHHHHCC
Confidence 56888899999999999999998763
No 366
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=91.62 E-value=13 Score=38.05 Aligned_cols=85 Identities=12% Similarity=0.111 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CchhHhhchh
Q psy15732 319 TGDQARAKVHAYFNHLRESLLVQEAAATSAVDMFVRERLGCLVQLHDDMGFWLQEVAKLYLKCEQMILQ-DDARVLTSGR 397 (550)
Q Consensus 319 ~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~e~~l~~-~~~~~L~~~~ 397 (550)
......+.|...|+.+.+....... -|..+...+......+.+....|.+....|+.....+++.... +|..=|.
T Consensus 256 kI~sREk~iN~qle~l~~eYr~~~~-~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv--- 331 (359)
T PF10498_consen 256 KIESREKYINNQLEPLIQEYRSAQD-ELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLV--- 331 (359)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHH---
Confidence 3344444455555555554333222 3344444445555555555555555555555555555555443 4443333
Q ss_pred HHHHHHHHHH
Q psy15732 398 EIKEAIETIE 407 (550)
Q Consensus 398 ~~~~~l~~~~ 407 (550)
.++..+.+++
T Consensus 332 ~IKqAl~kLk 341 (359)
T PF10498_consen 332 KIKQALTKLK 341 (359)
T ss_pred HHHHHHHHHH
Confidence 3555555554
No 367
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=91.41 E-value=0.56 Score=45.11 Aligned_cols=86 Identities=21% Similarity=0.276 Sum_probs=45.8
Q ss_pred EEeeCCCCCccchhhHHHHH-HHHHHHhhccCcCCCeEEEEecCCCCCCCC---------C---------------HHHH
Q psy15732 448 VTLGLDSADSADKERLPEAL-AELTKLIAEKELKDAALLLLANKQDIPGCE---------T---------------VESI 502 (550)
Q Consensus 448 ~~~~~d~~D~~d~~~~~~~~-~~l~~~~~~~~~~~~pili~~NK~Dl~~~~---------~---------------~~~i 502 (550)
+++-+|+.-.+|+..|-.+. -.+.-++. -+.|.++|.||+|+.... + .+++
T Consensus 126 ~v~LvD~~~~~~~~~f~s~~L~s~s~~~~----~~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i 201 (238)
T PF03029_consen 126 VVFLVDSSFCSDPSKFVSSLLLSLSIMLR----LELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEI 201 (238)
T ss_dssp EEEEE-GGG-SSHHHHHHHHHHHHHHHHH----HTSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHH
T ss_pred EEEEEecccccChhhHHHHHHHHHHHHhh----CCCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 44456666567776674442 22222222 358999999999996511 1 1122
Q ss_pred HHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHH
Q psy15732 503 TEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 503 ~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
.+.+. .+ .....+++.|+.+|+|+.+.+..|-+.+
T Consensus 202 ~~~l~--~~--~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 202 AELLD--DF--GLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHCC--CC--SSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred HHHHh--hc--CCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 22222 11 2233899999999999999998886654
No 368
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=91.23 E-value=0.35 Score=47.64 Aligned_cols=49 Identities=24% Similarity=0.265 Sum_probs=37.9
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHH
Q psy15732 482 AALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 482 ~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
+|-|++.||+|+.+. +++..... ...++.+||++|-|+++..+.|-..+
T Consensus 240 ~p~l~v~NKiD~~~~---e~~~~l~~--------~~~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 240 KPALYVVNKIDLPGL---EELERLAR--------KPNSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred eeeEEEEecccccCH---HHHHHHHh--------ccceEEEecccCCCHHHHHHHHHHhh
Confidence 799999999999763 44443332 12678899999999999999887765
No 369
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=91.20 E-value=0.45 Score=49.76 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=30.6
Q ss_pred CeEEEEecCCCCCCCCC--HHHHHHhcC--CCcccCCCcEEEEEecccCCCCHHH
Q psy15732 482 AALLLLANKQDIPGCET--VESITEAFD--LYKLCCGRSWHIQACNAQSGEGLHE 532 (550)
Q Consensus 482 ~pili~~NK~Dl~~~~~--~~~i~~~~~--l~~~~~~~~~~~~~~SA~~g~gi~e 532 (550)
.+++|+.||+|+.+... .+++.+.+. +..+. ...+.++++||++|+||++
T Consensus 134 ~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 134 RHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLG-FRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred CcEEEEEEecccccchHHHHHHHHHHHHHHHHHcC-CCCccEEEeecccCCCCcc
Confidence 36889999999964211 122232221 01111 2246799999999999986
No 370
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=91.07 E-value=0.46 Score=49.48 Aligned_cols=81 Identities=20% Similarity=0.265 Sum_probs=57.6
Q ss_pred hhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCC------CC--------------CCHHHHHHhcC-----CCcccCC
Q psy15732 460 KERLPEALAELTKLIAEKELKDAALLLLANKQDIP------GC--------------ETVESITEAFD-----LYKLCCG 514 (550)
Q Consensus 460 ~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~------~~--------------~~~~~i~~~~~-----l~~~~~~ 514 (550)
..++.++...+..+.+++...++||+|+.||.|+- +. -+.+.+.+++. +..- ..
T Consensus 282 ~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~-~~ 360 (389)
T PF00503_consen 282 TNRLHESLNLFESICNNPWFKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRN-NS 360 (389)
T ss_dssp SBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHST-TT
T ss_pred HHHHHHHHHHHHHHHhCcccccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccC-CC
Confidence 47899999999999999988999999999999981 11 12333333332 1111 12
Q ss_pred --CcEEEEEecccCCCCHHHHHHHHHHHH
Q psy15732 515 --RSWHIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 515 --~~~~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
+.+.+..|+|.+-+.|..+|..+.+.|
T Consensus 361 ~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 361 PSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp TCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred CCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 778888999999999999998877643
No 371
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=90.83 E-value=0.63 Score=48.53 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=28.5
Q ss_pred CCeEE-EEecCCCCCCCCC-----HHHHHHhcCCCcccCCCcEEEEEecccCCC
Q psy15732 481 DAALL-LLANKQDIPGCET-----VESITEAFDLYKLCCGRSWHIQACNAQSGE 528 (550)
Q Consensus 481 ~~pil-i~~NK~Dl~~~~~-----~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~ 528 (550)
++|.+ |+.||+|+.+... .+++.+.+....+. ...+.++++||++|.
T Consensus 127 gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 127 GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP-GDDTPIIRGSALKAL 179 (394)
T ss_pred CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC-ccCccEEECcccccc
Confidence 46755 6899999864311 12344444422221 234789999999985
No 372
>PRK12735 elongation factor Tu; Reviewed
Probab=90.27 E-value=0.35 Score=50.44 Aligned_cols=60 Identities=18% Similarity=0.180 Sum_probs=35.0
Q ss_pred CCCeEE-EEecCCCCCCCCC-H----HHHHHhcCCCcccCCCcEEEEEecccCCC----------CHHHHHHHHHHH
Q psy15732 480 KDAALL-LLANKQDIPGCET-V----ESITEAFDLYKLCCGRSWHIQACNAQSGE----------GLHEGLDWLSRQ 540 (550)
Q Consensus 480 ~~~pil-i~~NK~Dl~~~~~-~----~~i~~~~~l~~~~~~~~~~~~~~SA~~g~----------gi~e~f~~l~~~ 540 (550)
.++|.+ |+.||+|+.+... . .++...+....+. ...+.++++||++|. |+.+.++.|...
T Consensus 126 ~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~-~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 126 VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP-GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC-cCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 347855 5799999953211 1 1333333321121 235889999999995 555665555554
No 373
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=90.24 E-value=1 Score=48.69 Aligned_cols=26 Identities=19% Similarity=-0.056 Sum_probs=21.6
Q ss_pred EEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 517 WHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 517 ~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
.++|..||.++.||++.++.|...+.
T Consensus 250 ~PV~~GSA~~n~Gv~~LLd~i~~~~P 275 (527)
T TIGR00503 250 TPVFFGTALGNFGVDHFLDGLLQWAP 275 (527)
T ss_pred eEEEEeecccCccHHHHHHHHHHHCC
Confidence 45688899999999999999988763
No 374
>KOG4362|consensus
Probab=90.20 E-value=0.19 Score=54.46 Aligned_cols=70 Identities=23% Similarity=0.426 Sum_probs=51.7
Q ss_pred hhccCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccC-CCccCCCCCCCcccCCCCCccCccccHHHHHHHH
Q psy15732 59 ILILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIK-DDTITCPFDRQPTPVGYSGVWGLKKNFALLELIE 137 (550)
Q Consensus 59 ~~~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~-~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~ 137 (550)
+..+...+.|+||...+. + |..+.|-|.||..|+-..+.. .....||+|+....... .+.-.....+++
T Consensus 15 i~~~~k~lEc~ic~~~~~---~--p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s-----~~Es~r~sq~vq 84 (684)
T KOG4362|consen 15 INAMQKILECPICLEHVK---E--PSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRS-----LRESPRFSQLSK 84 (684)
T ss_pred HHHHhhhccCCceeEEee---c--cchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhh-----ccccchHHHHHH
Confidence 345667899999999999 8 999999999999999887663 23678999997665432 333444444554
Q ss_pred H
Q psy15732 138 K 138 (550)
Q Consensus 138 ~ 138 (550)
.
T Consensus 85 e 85 (684)
T KOG4362|consen 85 E 85 (684)
T ss_pred H
Confidence 3
No 375
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.97 E-value=6 Score=44.40 Aligned_cols=64 Identities=6% Similarity=0.093 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 275 RSYVKNASSNVQHLIEEITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHLRESLLVQEAAATSAV 349 (550)
Q Consensus 275 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l 349 (550)
+.+++..+..++...+.-...+..+++.+..+.. .++.+.++++...+ -++.|.+|-+.+++.+
T Consensus 560 r~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~----------~ae~LaeR~e~a~d-~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 560 REEIQRRVKLLKQQKEQQLKELQELQEERKSLRE----------SAEKLAERYEEAKD-KQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444555544 44444444333322 2344444444444444
No 376
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=89.86 E-value=13 Score=32.53 Aligned_cols=44 Identities=11% Similarity=0.150 Sum_probs=30.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15732 265 ALVEIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEG 308 (550)
Q Consensus 265 ~~l~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 308 (550)
.|+....+..+..+...+........++.......+..+...+.
T Consensus 30 kPi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~ 73 (141)
T PRK08476 30 KPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNARE 73 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777777777777777777776666666666666555
No 377
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=89.83 E-value=0.11 Score=48.05 Aligned_cols=49 Identities=24% Similarity=0.478 Sum_probs=34.9
Q ss_pred CcceeccccccccccCCCCcEEe--c-CCCcchhhhHhhcccCCCccCCC--CCCCc
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLL--H-CGHTVCLACLLRLPIKDDTITCP--FDRQP 115 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l--~-CgH~fC~~Cl~~~~~~~~~~~CP--~Cr~~ 115 (550)
.+-.||+|...-..+.+ -++| | |-|.+|.+|+.+.+.. +...|| .|.+.
T Consensus 9 ~d~~CPvCksDrYLnPd--ik~linPECyHrmCESCvdRIFs~-GpAqCP~~gC~kI 62 (314)
T COG5220 9 EDRRCPVCKSDRYLNPD--IKILINPECYHRMCESCVDRIFSR-GPAQCPYKGCGKI 62 (314)
T ss_pred hcccCCccccccccCCC--eEEEECHHHHHHHHHHHHHHHhcC-CCCCCCCccHHHH
Confidence 34589999765444323 3455 5 9999999999999885 445799 67554
No 378
>KOG4367|consensus
Probab=89.63 E-value=3 Score=42.27 Aligned_cols=29 Identities=28% Similarity=0.783 Sum_probs=24.9
Q ss_pred CCCCccccccccccccchhhhhHhhhhhc
Q psy15732 170 KCDEDESHIAVLYCTVCASHLCEQCASDS 198 (550)
Q Consensus 170 ~C~~~~~~~A~~~C~~C~~~lC~~C~~~h 198 (550)
.|...+...-++||..|....|..|.+..
T Consensus 225 ~ct~h~~e~~smyc~~ck~pvc~~clee~ 253 (699)
T KOG4367|consen 225 TCTDHELENHSMYCVQCKMPVCYQCLEEG 253 (699)
T ss_pred hccCCCCCCceEEEEecCChHHHHHHHhh
Confidence 47777777789999999999999999864
No 379
>PRK12740 elongation factor G; Reviewed
Probab=89.61 E-value=1.9 Score=48.45 Aligned_cols=27 Identities=19% Similarity=0.099 Sum_probs=23.5
Q ss_pred cEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 516 SWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 516 ~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
-++++..||++|.||+..|+.|...+.
T Consensus 236 ~~Pv~~gSA~~~~Gv~~LLd~i~~~lP 262 (668)
T PRK12740 236 IVPVFCGSALKNKGVQRLLDAVVDYLP 262 (668)
T ss_pred EEEEEeccccCCccHHHHHHHHHHHCC
Confidence 356899999999999999999998763
No 380
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.58 E-value=25 Score=35.51 Aligned_cols=31 Identities=16% Similarity=0.053 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15732 356 RLGCLVQLHDDMGFWLQEVAKLYLKCEQMIL 386 (550)
Q Consensus 356 ~~~~l~~~~~~l~~~~~~l~~~~~~~e~~l~ 386 (550)
.+..+...++.+...+..+...+..+++...
T Consensus 238 el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 238 ELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555543
No 381
>KOG3970|consensus
Probab=89.47 E-value=0.33 Score=44.51 Aligned_cols=51 Identities=24% Similarity=0.391 Sum_probs=40.8
Q ss_pred cceeccccccccccCCCCcEEecCCCcchhhhHhhccc------CCCccCCCCCCCcccC
Q psy15732 65 ALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPI------KDDTITCPFDRQPTPV 118 (550)
Q Consensus 65 ~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~------~~~~~~CP~Cr~~~~~ 118 (550)
.-.|.+|.-.+... + -+.|-|.|.|.+.|+..+.. ......||.|..++-.
T Consensus 50 ~pNC~LC~t~La~g-d--t~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 50 NPNCRLCNTPLASG-D--TTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCCceeCCccccC-c--ceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 34799999999854 6 88899999999999988754 1345689999888654
No 382
>PRK09602 translation-associated GTPase; Reviewed
Probab=89.46 E-value=0.44 Score=49.51 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=36.3
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHH-HHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHE-GLDWLSRQL 541 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e-~f~~l~~~~ 541 (550)
...|+++|+||.|+... .+.+...... ....++++||+.|.|+.+ .++++.+.+
T Consensus 216 t~KPvI~VlNK~D~~~~--~~~l~~i~~~------~~~~vvpISA~~e~~l~~~l~~~i~~~l 270 (396)
T PRK09602 216 ISKPMVIAANKADLPPA--EENIERLKEE------KYYIVVPTSAEAELALRRAAKAGLIDYI 270 (396)
T ss_pred cCCCEEEEEEchhcccc--hHHHHHHHhc------CCCcEEEEcchhhhhHHHHHHHhHHhhC
Confidence 34899999999997532 1122222221 123588999999999999 667776654
No 383
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=89.43 E-value=0.79 Score=33.03 Aligned_cols=42 Identities=14% Similarity=0.301 Sum_probs=20.5
Q ss_pred EEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCC
Q psy15732 448 VTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQD 492 (550)
Q Consensus 448 ~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~D 492 (550)
+++.+|+.-..- -++++-..-++++. +...+.|+++|.||+|
T Consensus 17 ilfi~D~Se~CG-ysie~Q~~L~~~ik--~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 17 ILFIIDPSEQCG-YSIEEQLSLFKEIK--PLFPNKPVIVVLNKID 58 (58)
T ss_dssp EEEEE-TT-TTS-S-HHHHHHHHHHHH--HHTTTS-EEEEE--TT
T ss_pred EEEEEcCCCCCC-CCHHHHHHHHHHHH--HHcCCCCEEEEEeccC
Confidence 445555541111 24554445555553 2345799999999998
No 384
>KOG4185|consensus
Probab=89.15 E-value=0.089 Score=52.57 Aligned_cols=49 Identities=31% Similarity=0.705 Sum_probs=40.6
Q ss_pred ceecccccccccc-CCCCcEEec--------CCCcchhhhHhhcccCCCccCCCCCCCc
Q psy15732 66 LECRVCEDIFLTQ-GDKVPRLLH--------CGHTVCLACLLRLPIKDDTITCPFDRQP 115 (550)
Q Consensus 66 l~C~iC~~~~~~~-~~~~P~~l~--------CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~ 115 (550)
-.|.+|...|..+ +...|+++. |||+.|..|+........ +.||+|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~-~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAG-IKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhh-hcCCcccce
Confidence 5699999999843 357799998 999999999999877544 889999974
No 385
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=88.54 E-value=0.64 Score=45.62 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=23.7
Q ss_pred CCCeEEEEecCCCCCCCCC---HHHHHHhcCCC
Q psy15732 480 KDAALLLLANKQDIPGCET---VESITEAFDLY 509 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~---~~~i~~~~~l~ 509 (550)
.++|++|++||+|+.++.. .+++++.+++.
T Consensus 122 ~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~~ 154 (267)
T cd04169 122 RGIPIITFINKLDREGRDPLELLDEIEEELGID 154 (267)
T ss_pred cCCCEEEEEECCccCCCCHHHHHHHHHHHHCCC
Confidence 4689999999999987644 57788877753
No 386
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=88.33 E-value=0.48 Score=46.58 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=43.4
Q ss_pred eEEEEecCCCCCCC----CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 483 ALLLLANKQDIPGC----ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 483 pili~~NK~Dl~~~----~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
-|+|+-||+||... .+-++|.+++. -.+ -.+..++++||..+.||+-.++.|.+.+..
T Consensus 142 ~iiIvQNKIDlV~~E~AlE~y~qIk~Fvk-Gt~--Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 142 NIIIVQNKIDLVSRERALENYEQIKEFVK-GTV--AENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred eEEEEecccceecHHHHHHHHHHHHHHhc-ccc--cCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 57999999999653 23455555554 122 235689999999999999999999998754
No 387
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=88.28 E-value=0.54 Score=52.30 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=30.3
Q ss_pred CeEEEEecCCCCCCC--CCHHHHHHhcC--CCcccCCCcEEEEEecccCCCCHHH
Q psy15732 482 AALLLLANKQDIPGC--ETVESITEAFD--LYKLCCGRSWHIQACNAQSGEGLHE 532 (550)
Q Consensus 482 ~pili~~NK~Dl~~~--~~~~~i~~~~~--l~~~~~~~~~~~~~~SA~~g~gi~e 532 (550)
.|++|+.||+|+.+. ...+++...+. +..+ .-..+.++++||++|.||.+
T Consensus 158 ~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~-~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 158 RHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKL-GLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred CeEEEEEEecccccchhHHHHHHHHHHHHHHHHc-CCCCccEEEEecccCCCccc
Confidence 578999999999631 11222322221 0011 02346789999999999974
No 388
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=88.11 E-value=5.7 Score=27.56 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 325 AKVHAYFNHLRESLLVQEAAATSAVDMFVRERLGCLVQLHDDMGF 369 (550)
Q Consensus 325 ~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~~~~~l~~ 369 (550)
..|...++.|...|+++..+++..|..++...+..-.++++.+..
T Consensus 7 ~~~d~yI~~Lk~kLd~Kk~Eil~~ln~EY~kiLk~r~~~lEevKr 51 (56)
T PF08112_consen 7 STIDKYISILKSKLDEKKSEILSNLNMEYEKILKQRRKELEEVKR 51 (56)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788899999999999999999999998887765555555443
No 389
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=88.08 E-value=0.37 Score=46.93 Aligned_cols=55 Identities=22% Similarity=0.317 Sum_probs=39.2
Q ss_pred CCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCCC
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGY 120 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~ 120 (550)
++++ ||+|.+..... |..-.-.+||--+|+-|+...... -.-.||-||+......
T Consensus 13 eed~-cplcie~mdit-dknf~pc~cgy~ic~fc~~~irq~-lngrcpacrr~y~den 67 (480)
T COG5175 13 EEDY-CPLCIEPMDIT-DKNFFPCPCGYQICQFCYNNIRQN-LNGRCPACRRKYDDEN 67 (480)
T ss_pred cccc-Ccccccccccc-cCCcccCCcccHHHHHHHHHHHhh-ccCCChHhhhhccccc
Confidence 3444 99999998865 411233389999999999776543 3446999999876543
No 390
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=87.96 E-value=0.25 Score=52.76 Aligned_cols=52 Identities=19% Similarity=0.203 Sum_probs=31.9
Q ss_pred CeEEEEecCCCCCCCC--CHHHHHHhcC--CCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 482 AALLLLANKQDIPGCE--TVESITEAFD--LYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 482 ~pili~~NK~Dl~~~~--~~~~i~~~~~--l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
.|++|+.||+|+.+.. ..+++.+.+. +..+.-...+.++++||++|+||.+.
T Consensus 161 ~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 161 KHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred CceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 4789999999996421 1233333321 01110012578999999999999764
No 391
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=87.92 E-value=1 Score=44.33 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=27.3
Q ss_pred CCCeEEEEecCCCCCCCC---CHHHHHHhcCCCcccCCCcEEEEEeccc
Q psy15732 480 KDAALLLLANKQDIPGCE---TVESITEAFDLYKLCCGRSWHIQACNAQ 525 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~---~~~~i~~~~~l~~~~~~~~~~~~~~SA~ 525 (550)
.++|++|+.||+|+.++. ..+++.+.++...+ -.++++||.
T Consensus 115 ~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~-----~~~~Pisa~ 158 (270)
T cd01886 115 YNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPV-----PLQLPIGEE 158 (270)
T ss_pred cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCce-----EEEeccccC
Confidence 458999999999997652 35677777764322 234555554
No 392
>PLN03126 Elongation factor Tu; Provisional
Probab=87.66 E-value=1.9 Score=45.96 Aligned_cols=76 Identities=18% Similarity=0.179 Sum_probs=41.2
Q ss_pred EEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCe-EEEEecCCCCCCCCC-HH----HHHHhcCCCcccCCCcEEE
Q psy15732 446 RVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAA-LLLLANKQDIPGCET-VE----SITEAFDLYKLCCGRSWHI 519 (550)
Q Consensus 446 ~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~p-ili~~NK~Dl~~~~~-~~----~i~~~~~l~~~~~~~~~~~ 519 (550)
..+++.+|+.+.... ..++++..+ .. .++| ++|+.||+|+.+... .+ ++.+.+.--.+. ...+.+
T Consensus 169 D~ailVVda~~G~~~----qt~e~~~~~-~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~-~~~~~~ 239 (478)
T PLN03126 169 DGAILVVSGADGPMP----QTKEHILLA-KQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP-GDDIPI 239 (478)
T ss_pred CEEEEEEECCCCCcH----HHHHHHHHH-HH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC-cCcceE
Confidence 445556665543322 223344333 11 3578 778999999964211 12 333333311221 356899
Q ss_pred EEecccCCCCH
Q psy15732 520 QACNAQSGEGL 530 (550)
Q Consensus 520 ~~~SA~~g~gi 530 (550)
+++||.+|.++
T Consensus 240 vp~Sa~~g~n~ 250 (478)
T PLN03126 240 ISGSALLALEA 250 (478)
T ss_pred EEEEccccccc
Confidence 99999998643
No 393
>KOG2932|consensus
Probab=87.20 E-value=0.25 Score=47.57 Aligned_cols=44 Identities=23% Similarity=0.508 Sum_probs=32.1
Q ss_pred cceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcc
Q psy15732 65 ALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPT 116 (550)
Q Consensus 65 ~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~ 116 (550)
.-.|.-|......- =++++|.|.||..|...- ....||.|...+
T Consensus 90 VHfCd~Cd~PI~IY----GRmIPCkHvFCl~CAr~~----~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIY----GRMIPCKHVFCLECARSD----SDKICPLCDDRV 133 (389)
T ss_pred eEeecccCCcceee----ecccccchhhhhhhhhcC----ccccCcCcccHH
Confidence 45688887766531 357899999999999653 345699996554
No 394
>CHL00071 tufA elongation factor Tu
Probab=86.67 E-value=0.68 Score=48.51 Aligned_cols=49 Identities=18% Similarity=0.211 Sum_probs=30.5
Q ss_pred CCe-EEEEecCCCCCCCCC-H----HHHHHhcCCCcccCCCcEEEEEecccCCCCH
Q psy15732 481 DAA-LLLLANKQDIPGCET-V----ESITEAFDLYKLCCGRSWHIQACNAQSGEGL 530 (550)
Q Consensus 481 ~~p-ili~~NK~Dl~~~~~-~----~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi 530 (550)
++| ++|+.||+|+.+... . .++...+....+. ...+.++++||.+|.|+
T Consensus 127 g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 127 GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP-GDDIPIVSGSALLALEA 181 (409)
T ss_pred CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC-CCcceEEEcchhhcccc
Confidence 578 778899999964311 1 2334443322221 23588999999999754
No 395
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=86.66 E-value=22 Score=35.19 Aligned_cols=11 Identities=0% Similarity=-0.013 Sum_probs=6.6
Q ss_pred CeEEEEecCCC
Q psy15732 482 AALLLLANKQD 492 (550)
Q Consensus 482 ~pili~~NK~D 492 (550)
-|+...|....
T Consensus 221 y~i~~~gs~s~ 231 (302)
T PF10186_consen 221 YPITPSGSRST 231 (302)
T ss_pred CCcccCccccc
Confidence 35666666654
No 396
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=86.04 E-value=0.71 Score=47.09 Aligned_cols=48 Identities=17% Similarity=0.226 Sum_probs=31.0
Q ss_pred eEEEEecCCCCCCCCC---HHHHHHhcC----CCcccCCCcEEEEEecccCCCCHHH
Q psy15732 483 ALLLLANKQDIPGCET---VESITEAFD----LYKLCCGRSWHIQACNAQSGEGLHE 532 (550)
Q Consensus 483 pili~~NK~Dl~~~~~---~~~i~~~~~----l~~~~~~~~~~~~~~SA~~g~gi~e 532 (550)
-++|+.||+|+.+ -+ .+++...+. .-.+ ....+.|+++||.+|+||.+
T Consensus 147 ~lIVavNKMD~v~-wde~rf~ei~~~v~~l~k~~G~-~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 147 QLIVAVNKMDLVS-WDEERFEEIVSEVSKLLKMVGY-NPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred eEEEEEEcccccc-cCHHHHHHHHHHHHHHHHHcCC-CccCCeEEecccccCCcccc
Confidence 5788889999975 22 222222221 1122 14478999999999999865
No 397
>PRK11637 AmiB activator; Provisional
Probab=86.02 E-value=49 Score=34.85 Aligned_cols=11 Identities=27% Similarity=0.797 Sum_probs=4.7
Q ss_pred CCCCHHHHHHHH
Q psy15732 526 SGEGLHEGLDWL 537 (550)
Q Consensus 526 ~g~gi~e~f~~l 537 (550)
.|.-|+ ...||
T Consensus 416 ~~~~vn-P~~~l 426 (428)
T PRK11637 416 QGQAVN-PQPWL 426 (428)
T ss_pred CCEEeC-hHHHh
Confidence 344343 33554
No 398
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=86.01 E-value=1.4 Score=40.88 Aligned_cols=63 Identities=14% Similarity=-0.025 Sum_probs=38.7
Q ss_pred CCeEEEEecCCCCCC--CC-------CHHH----HHHhcCCCccc--CCCcEEEEEeccc--CCCCHHHHHHHHHHHHHH
Q psy15732 481 DAALLLLANKQDIPG--CE-------TVES----ITEAFDLYKLC--CGRSWHIQACNAQ--SGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 481 ~~pili~~NK~Dl~~--~~-------~~~~----i~~~~~l~~~~--~~~~~~~~~~SA~--~g~gi~e~f~~l~~~~~~ 543 (550)
+.|+++|+||+|+.. .. ..++ +.+.+. ..+. ....-.||.+||. .|.|+....+.|...+..
T Consensus 107 ~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~-~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 107 GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCL-ENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHH-HHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 479999999999821 10 1122 222211 0000 0123478889998 678999999888888765
Q ss_pred h
Q psy15732 544 A 544 (550)
Q Consensus 544 ~ 544 (550)
.
T Consensus 186 ~ 186 (197)
T cd04104 186 H 186 (197)
T ss_pred H
Confidence 4
No 399
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=85.96 E-value=0.36 Score=40.02 Aligned_cols=34 Identities=26% Similarity=0.627 Sum_probs=26.0
Q ss_pred cCCcceeccccccccccCCCCcEEecCCCcchhhhHh
Q psy15732 62 LELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLL 98 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~ 98 (550)
+.+.-.|++|.+.+. +..=...||||.|...|+.
T Consensus 75 i~~~~~C~vC~k~l~---~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLG---NSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCC---CceEEEeCCCeEEeccccc
Confidence 456678999999999 5112333999999999985
No 400
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=85.42 E-value=26 Score=31.09 Aligned_cols=43 Identities=12% Similarity=0.088 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15732 266 LVEIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEG 308 (550)
Q Consensus 266 ~l~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 308 (550)
++....+..+..+...+........+........+..+...+.
T Consensus 34 pI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~ 76 (155)
T PRK06569 34 KAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNT 76 (155)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666666665555554
No 401
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=85.04 E-value=0.39 Score=33.70 Aligned_cols=44 Identities=23% Similarity=0.442 Sum_probs=22.0
Q ss_pred ceeccccccccccCCCCcEEe-cCCCcchhhhHhhccc---CCCccCCCCCCCc
Q psy15732 66 LECRVCEDIFLTQGDKVPRLL-HCGHTVCLACLLRLPI---KDDTITCPFDRQP 115 (550)
Q Consensus 66 l~C~iC~~~~~~~~~~~P~~l-~CgH~fC~~Cl~~~~~---~~~~~~CP~Cr~~ 115 (550)
|.||+....+. - |+.. .|.|.-|-+ +..++. ......||.|.++
T Consensus 3 L~CPls~~~i~---~--P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIR---I--PVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-S---S--EEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEE---e--CccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 78999999988 7 9777 999987754 223332 2355789999863
No 402
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=84.99 E-value=27 Score=31.01 Aligned_cols=60 Identities=7% Similarity=0.120 Sum_probs=39.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHH
Q psy15732 265 ALVEIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHL 334 (550)
Q Consensus 265 ~~l~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~l 334 (550)
.|+....+..+..+.+.+....+...+........+..+...+. ...+..+..+..-+..
T Consensus 45 ~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~----------ea~~ii~~A~~~a~~~ 104 (156)
T CHL00118 45 KPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARK----------EAQLEITQSQKEAKEI 104 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 36677777777777777777777777777777777776666666 5555554444444433
No 403
>PRK00049 elongation factor Tu; Reviewed
Probab=84.79 E-value=1.3 Score=46.30 Aligned_cols=48 Identities=19% Similarity=0.182 Sum_probs=29.3
Q ss_pred CCeEE-EEecCCCCCCCCC-----HHHHHHhcCCCcccCCCcEEEEEecccCCCC
Q psy15732 481 DAALL-LLANKQDIPGCET-----VESITEAFDLYKLCCGRSWHIQACNAQSGEG 529 (550)
Q Consensus 481 ~~pil-i~~NK~Dl~~~~~-----~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~g 529 (550)
++|++ |+.||+|+.+... ..++.+.+..-.+. ...+.++++||++|.+
T Consensus 127 g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 127 GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP-GDDTPIIRGSALKALE 180 (396)
T ss_pred CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC-ccCCcEEEeecccccC
Confidence 47876 5799999964211 12344444322221 3457899999999863
No 404
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=84.69 E-value=0.21 Score=37.39 Aligned_cols=42 Identities=29% Similarity=0.416 Sum_probs=25.6
Q ss_pred cceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 65 ALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 65 ~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
++.||.|...+. +.. ||.+|..|-..+.. ...||.|..++..
T Consensus 1 e~~CP~C~~~L~------~~~---~~~~C~~C~~~~~~---~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 1 ENTCPKCQQELE------WQG---GHYHCEACQKDYKK---EAFCPDCGQPLEV 42 (70)
T ss_dssp --B-SSS-SBEE------EET---TEEEETTT--EEEE---EEE-TTT-SB-EE
T ss_pred CCcCCCCCCccE------EeC---CEEECcccccccee---cccCCCcccHHHH
Confidence 478999999987 444 89999999987643 4569999988754
No 405
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=84.68 E-value=0.55 Score=33.56 Aligned_cols=40 Identities=15% Similarity=0.373 Sum_probs=27.5
Q ss_pred CcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCc
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQP 115 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~ 115 (550)
+.+.||.|.+.|. . ..++.-|......+...+.||+|...
T Consensus 1 ~~f~CP~C~~~~~---~---------~~L~~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 1 DSFTCPYCGKGFS---E---------SSLVEHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CCcCCCCCCCccC---H---------HHHHHHHHhHCcCCCCCccCCCchhh
Confidence 3589999999766 2 13556666655555557889999753
No 406
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=84.36 E-value=4.1 Score=38.33 Aligned_cols=14 Identities=29% Similarity=0.332 Sum_probs=12.4
Q ss_pred CCeEEEEecCCCCC
Q psy15732 481 DAALLLLANKQDIP 494 (550)
Q Consensus 481 ~~pili~~NK~Dl~ 494 (550)
++|++|++||+|+.
T Consensus 123 ~~p~iiviNK~D~~ 136 (213)
T cd04167 123 GLPIVLVINKIDRL 136 (213)
T ss_pred CCCEEEEEECcccC
Confidence 48999999999974
No 407
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=83.85 E-value=37 Score=32.84 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 270 EAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSK 305 (550)
Q Consensus 270 a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~ 305 (550)
.+..+|.+|++....|+.+-.+|.+...++..+...
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrED 104 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQLARMRED 104 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 445566666666666666555555555554444433
No 408
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=83.58 E-value=42 Score=32.05 Aligned_cols=26 Identities=12% Similarity=0.312 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15732 283 SNVQHLIEEITESVNTVDLVVSKIEG 308 (550)
Q Consensus 283 ~~l~~~~~~~~~~~~~~~~~~~~l~~ 308 (550)
..++..++.++..+..++..+..+..
T Consensus 48 ~~~~~e~e~le~qv~~~e~ei~~~r~ 73 (239)
T COG1579 48 EALEIELEDLENQVSQLESEIQEIRE 73 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444443333
No 409
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=83.41 E-value=52 Score=32.98 Aligned_cols=32 Identities=19% Similarity=0.082 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy15732 356 RLGCLVQLHDDMGFWLQEVAKLYLKCEQMILQ 387 (550)
Q Consensus 356 ~~~~l~~~~~~l~~~~~~l~~~~~~~e~~l~~ 387 (550)
.+..+...++.....+..+...+..++.....
T Consensus 233 ~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~ 264 (312)
T smart00787 233 ELQELESKIEDLTNKKSELNTEIAEAEKKLEQ 264 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445555555555566666666665543
No 410
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=83.27 E-value=28 Score=39.18 Aligned_cols=6 Identities=17% Similarity=0.158 Sum_probs=3.9
Q ss_pred cCCCcc
Q psy15732 87 HCGHTV 92 (550)
Q Consensus 87 ~CgH~f 92 (550)
.+|+.+
T Consensus 305 ~~G~l~ 310 (717)
T PF10168_consen 305 SNGKLY 310 (717)
T ss_pred cCCeEE
Confidence 667665
No 411
>KOG3850|consensus
Probab=83.23 E-value=53 Score=33.21 Aligned_cols=23 Identities=9% Similarity=0.296 Sum_probs=11.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 319 TGDQARAKVHAYFNHLRESLLVQ 341 (550)
Q Consensus 319 ~~~~~~~~I~~~f~~l~~~L~~~ 341 (550)
..+.++.++...+.-+.+.|+++
T Consensus 282 sye~Lke~~krdy~fi~etLQEE 304 (455)
T KOG3850|consen 282 SYERLKEQIKRDYKFIAETLQEE 304 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555443
No 412
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=83.09 E-value=33 Score=30.51 Aligned_cols=64 Identities=13% Similarity=0.079 Sum_probs=46.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy15732 266 LVEIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHLRESLL 339 (550)
Q Consensus 266 ~l~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~l~~~L~ 339 (550)
|+....+..+..+...+........+........+..+...+. .........+...+.+.....
T Consensus 26 pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~----------ea~~ii~~A~~~a~~~~~~a~ 89 (159)
T PRK09173 26 MIARSLDARADRIKNELAEARRLREEAQQLLAEYQRKRKEAEK----------EAADIVAAAEREAEALTAEAK 89 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 5777788888888888888888888888888888887777777 666666666655554444333
No 413
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=82.88 E-value=1.1 Score=39.15 Aligned_cols=21 Identities=24% Similarity=0.558 Sum_probs=17.4
Q ss_pred CcceeccccccccccCCCCcEEecCC
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLLHCG 89 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l~Cg 89 (550)
++.+||||++.-. + .+.|-|.
T Consensus 1 ed~~CpICme~PH---N--AVLLlCS 21 (162)
T PF07800_consen 1 EDVTCPICMEHPH---N--AVLLLCS 21 (162)
T ss_pred CCccCceeccCCC---c--eEEEEec
Confidence 4679999999998 8 9998653
No 414
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=82.45 E-value=43 Score=31.32 Aligned_cols=61 Identities=3% Similarity=-0.004 Sum_probs=44.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy15732 265 ALVEIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHLR 335 (550)
Q Consensus 265 ~~l~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~l~ 335 (550)
.|+....+..+..+...+....+...+.+......+..+.+.+. .+.+.....+...+.+.
T Consensus 71 kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~----------eA~~Ii~~A~~eAe~~~ 131 (205)
T PRK06231 71 KPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALA----------QAKEIIDQANYEALQLK 131 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 36777778888888888888888888888888887777777766 66555555555555443
No 415
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=82.40 E-value=2 Score=44.58 Aligned_cols=90 Identities=21% Similarity=0.259 Sum_probs=56.2
Q ss_pred EEEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCC----CcccCCCcEEEE
Q psy15732 445 MRVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDL----YKLCCGRSWHIQ 520 (550)
Q Consensus 445 ~~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l----~~~~~~~~~~~~ 520 (550)
+..+++.+|+.+.. +...+..+.+.++. +.+.+||.||+|.+++...+-+.+.+.| ..--.+-.++++
T Consensus 92 VDgvlLlVDA~EGp----MPQTrFVlkKAl~~----gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPiv 163 (603)
T COG1217 92 VDGVLLLVDASEGP----MPQTRFVLKKALAL----GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIV 163 (603)
T ss_pred cceEEEEEEcccCC----CCchhhhHHHHHHc----CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEE
Confidence 44455555554333 33334556665544 3455677999999998765555554442 111124568889
Q ss_pred EecccCC----------CCHHHHHHHHHHHHH
Q psy15732 521 ACNAQSG----------EGLHEGLDWLSRQLI 542 (550)
Q Consensus 521 ~~SA~~g----------~gi~e~f~~l~~~~~ 542 (550)
..||+.| .++...|+.|.+.+.
T Consensus 164 YAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp 195 (603)
T COG1217 164 YASARNGTASLDPEDEADDMAPLFETILDHVP 195 (603)
T ss_pred EeeccCceeccCccccccchhHHHHHHHHhCC
Confidence 9999987 357788888888764
No 416
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=82.27 E-value=27 Score=29.44 Aligned_cols=57 Identities=16% Similarity=0.263 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 319 TGDQARAKVHAYFNHLRESLLVQEAAATSAVDMFVRERLGCLVQLHDDMGFWLQEVA 375 (550)
Q Consensus 319 ~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~~~~~l~~~~~~l~ 375 (550)
..++++.+......++-..++++-..+|..|.--....+..|...+..|...+..+.
T Consensus 60 ~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 60 ALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555556667777777777777777776666677777777777776666554
No 417
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=82.25 E-value=50 Score=31.95 Aligned_cols=61 Identities=8% Similarity=0.023 Sum_probs=42.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy15732 265 ALVEIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHLR 335 (550)
Q Consensus 265 ~~l~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~l~ 335 (550)
.|+....++.+..+...+........+.+......+......+. ....+....+...+...
T Consensus 28 kPi~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~----------ea~~ii~~A~~eA~~~~ 88 (250)
T PRK14474 28 KPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQ----------QRASFMAQAQEAADEQR 88 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 36777778888888888888888777777777777777777666 55555555544444443
No 418
>PRK12739 elongation factor G; Reviewed
Probab=82.21 E-value=3.1 Score=46.83 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=23.0
Q ss_pred EEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 517 WHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 517 ~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
++++..||.+|.||+..++.|...+.
T Consensus 253 ~Pv~~gSa~~~~Gv~~LLd~I~~~lP 278 (691)
T PRK12739 253 FPVLCGSAFKNKGVQPLLDAVVDYLP 278 (691)
T ss_pred EEEEeccccCCccHHHHHHHHHHHCC
Confidence 56888999999999999999998763
No 419
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=82.13 E-value=1.2 Score=44.47 Aligned_cols=48 Identities=19% Similarity=0.226 Sum_probs=29.9
Q ss_pred eEEEEecCCCCCCC--CCHHHHHHhcC--CCcccCCCcEEEEEecccCCCCHH
Q psy15732 483 ALLLLANKQDIPGC--ETVESITEAFD--LYKLCCGRSWHIQACNAQSGEGLH 531 (550)
Q Consensus 483 pili~~NK~Dl~~~--~~~~~i~~~~~--l~~~~~~~~~~~~~~SA~~g~gi~ 531 (550)
-++|+.||+||.+- ...++|...+. ...+ .-....+++.||..|+||-
T Consensus 141 hvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L-~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 141 HVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQL-GLKDVRFIPISALLGDNVV 192 (431)
T ss_pred EEEEEEeeecccccCHHHHHHHHHHHHHHHHHc-CCCcceEEechhccCCccc
Confidence 47777899999653 12333332221 0111 1345699999999999985
No 420
>KOG0085|consensus
Probab=81.68 E-value=9.4 Score=35.89 Aligned_cols=87 Identities=15% Similarity=0.207 Sum_probs=59.6
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC-CCCHHHHHHhc----------------------CCCccc
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG-CETVESITEAF----------------------DLYKLC 512 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~-~~~~~~i~~~~----------------------~l~~~~ 512 (550)
.+.+..+++|++..+..++..|-..+-++++..||.||-. .+.-.-+..++ .++.-
T Consensus 241 E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd- 319 (359)
T KOG0085|consen 241 ESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPD- 319 (359)
T ss_pred HccchhhHHHHHHHHHHHhccccccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCC-
Confidence 4556789999999999999888888999999999999831 11111111111 11111
Q ss_pred CCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 513 CGRSWHIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 513 ~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
.++-+.-..|.|.+-+||.-+|.-+-..+..
T Consensus 320 ~dKii~SHfTcATDT~NIRfVFaaVkDtiLq 350 (359)
T KOG0085|consen 320 SDKIIYSHFTCATDTENIRFVFAAVKDTILQ 350 (359)
T ss_pred ccceeeeeeeecccchhHHHHHHHHHHHHHH
Confidence 1334455668899999999999888776643
No 421
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=81.50 E-value=1.5 Score=45.18 Aligned_cols=85 Identities=18% Similarity=0.145 Sum_probs=52.2
Q ss_pred eEEEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHH----HHHhcCCCcccCCCcEEE
Q psy15732 444 EMRVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVES----ITEAFDLYKLCCGRSWHI 519 (550)
Q Consensus 444 ~~~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~----i~~~~~l~~~~~~~~~~~ 519 (550)
.+...++.+++.+.-+..+.+-. .-|. ++ ...-.+||.+|.|+.+....++ |.+.+. + ....+
T Consensus 73 ~~d~alLvV~~deGl~~qtgEhL-~iLd-ll-----gi~~giivltk~D~~d~~r~e~~i~~Il~~l~---l---~~~~i 139 (447)
T COG3276 73 GIDYALLVVAADEGLMAQTGEHL-LILD-LL-----GIKNGIIVLTKADRVDEARIEQKIKQILADLS---L---ANAKI 139 (447)
T ss_pred CCceEEEEEeCccCcchhhHHHH-HHHH-hc-----CCCceEEEEeccccccHHHHHHHHHHHHhhcc---c---ccccc
Confidence 34556677777555554443322 1122 21 1123689999999865432222 223233 2 34567
Q ss_pred EEecccCCCCHHHHHHHHHHHH
Q psy15732 520 QACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 520 ~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
|.+||++|+||++.-..|.+..
T Consensus 140 ~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 140 FKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred cccccccCCCHHHHHHHHHHhh
Confidence 9999999999999999998877
No 422
>KOG0826|consensus
Probab=81.44 E-value=0.64 Score=45.41 Aligned_cols=46 Identities=24% Similarity=0.557 Sum_probs=36.7
Q ss_pred CcceeccccccccccCCCCcEEec-CCCcchhhhHhhcccCCCccCCCCCCCcc
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLLH-CGHTVCLACLLRLPIKDDTITCPFDRQPT 116 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l~-CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~ 116 (550)
+.-.||+|.+.-. + |..+. -|-.||..|+-.... ..-.||+=..+.
T Consensus 299 ~~~~CpvClk~r~---N--ptvl~vSGyVfCY~Ci~~Yv~--~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 299 DREVCPVCLKKRQ---N--PTVLEVSGYVFCYPCIFSYVV--NYGHCPVTGYPA 345 (357)
T ss_pred ccccChhHHhccC---C--CceEEecceEEeHHHHHHHHH--hcCCCCccCCcc
Confidence 4568999999999 8 98885 599999999999887 445699754443
No 423
>PLN03127 Elongation factor Tu; Provisional
Probab=81.11 E-value=1.8 Score=45.80 Aligned_cols=60 Identities=23% Similarity=0.352 Sum_probs=35.1
Q ss_pred CCe-EEEEecCCCCCCCCC-HH----HHHHhcCCCcccCCCcEEEEEeccc---CCCC-------HHHHHHHHHHHH
Q psy15732 481 DAA-LLLLANKQDIPGCET-VE----SITEAFDLYKLCCGRSWHIQACNAQ---SGEG-------LHEGLDWLSRQL 541 (550)
Q Consensus 481 ~~p-ili~~NK~Dl~~~~~-~~----~i~~~~~l~~~~~~~~~~~~~~SA~---~g~g-------i~e~f~~l~~~~ 541 (550)
++| ++|+.||+|+.+... .+ ++.+.+....+. ...+.++++||. +|.| +.+.+++|.+.+
T Consensus 176 gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~-~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 176 GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFP-GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCC-CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 578 567899999964211 11 222333211221 335788888886 5655 677777777654
No 424
>KOG2930|consensus
Probab=81.00 E-value=0.8 Score=36.69 Aligned_cols=30 Identities=23% Similarity=0.525 Sum_probs=25.4
Q ss_pred cCCCcchhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 87 HCGHTVCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 87 ~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
.|.|.|...|+.+|+. ..-.||.|.++-..
T Consensus 80 ~CNHaFH~hCisrWlk--tr~vCPLdn~eW~~ 109 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLK--TRNVCPLDNKEWVF 109 (114)
T ss_pred ecchHHHHHHHHHHHh--hcCcCCCcCcceeE
Confidence 8999999999999998 44569999887643
No 425
>KOG1940|consensus
Probab=80.95 E-value=0.91 Score=44.01 Aligned_cols=48 Identities=21% Similarity=0.576 Sum_probs=38.2
Q ss_pred CcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCC
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQ 114 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~ 114 (550)
....||+|.+.+... ...|..++|||+.-..|+....-. + +.||.|..
T Consensus 157 ~~~ncPic~e~l~~s-~~~~~~~~CgH~~h~~cf~e~~~~-~-y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLS-FEDAGVLKCGHYMHSRCFEEMICE-G-YTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccc-cccCCccCcccchHHHHHHHHhcc-C-CCCCcccc
Confidence 345699999988754 223788899999999999887664 3 89999987
No 426
>KOG1815|consensus
Probab=80.24 E-value=3.3 Score=43.83 Aligned_cols=51 Identities=22% Similarity=0.444 Sum_probs=37.1
Q ss_pred CCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccC----CC--ccCCCC--CCCccc
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIK----DD--TITCPF--DRQPTP 117 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~----~~--~~~CP~--Cr~~~~ 117 (550)
.....|.||...+. . ....+.|||.||..|+...+.. +. .+.||. |.....
T Consensus 68 ~~~~~c~ic~~~~~---~-~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~ 126 (444)
T KOG1815|consen 68 KGDVQCGICVESYD---G-EIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVG 126 (444)
T ss_pred CccccCCcccCCCc---c-hhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCC
Confidence 45689999999997 4 2556699999999999987651 12 267885 554443
No 427
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=79.86 E-value=50 Score=30.42 Aligned_cols=42 Identities=14% Similarity=0.077 Sum_probs=21.6
Q ss_pred cccccccccccccCCCC----cccHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 247 PLMCFICKDYGRHKTHK----HALVEIEAENLRSYVKNASSNVQHL 288 (550)
Q Consensus 247 ~~iC~~C~~~~~H~~H~----~~~l~~a~~~~~~~l~~~l~~l~~~ 288 (550)
.+.-..+-..|-|+.-- +....++-.+.++++.+.+..+...
T Consensus 9 saYY~amEkvG~hKRdilvdrVe~Ardsq~eaqeQF~sALe~f~sl 54 (201)
T PF11172_consen 9 SAYYSAMEKVGVHKRDILVDRVEDARDSQQEAQEQFKSALEQFKSL 54 (201)
T ss_pred HHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444454457787643 2233334455566666666554443
No 428
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=79.71 E-value=1.4 Score=40.04 Aligned_cols=15 Identities=33% Similarity=0.468 Sum_probs=12.9
Q ss_pred CCeEEEEecCCCCCC
Q psy15732 481 DAALLLLANKQDIPG 495 (550)
Q Consensus 481 ~~pili~~NK~Dl~~ 495 (550)
+.|+++|.||+||.+
T Consensus 30 ~kp~IlVlNK~DL~~ 44 (172)
T cd04178 30 NKKLVLVLNKIDLVP 44 (172)
T ss_pred CCCEEEEEehhhcCC
Confidence 479999999999943
No 429
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=79.67 E-value=46 Score=29.92 Aligned_cols=61 Identities=13% Similarity=0.073 Sum_probs=41.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy15732 265 ALVEIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHLR 335 (550)
Q Consensus 265 ~~l~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~l~ 335 (550)
.|+....+..+..+.+.+........+.+......+..+...+. ....+....+..-+...
T Consensus 33 ~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~----------ea~~Ii~~A~~~a~~~~ 93 (167)
T PRK14475 33 KALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAER----------QAAAMLAAAKADARRME 93 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 45677777777888888888777777777777777777777666 55555555555444443
No 430
>KOG2114|consensus
Probab=79.32 E-value=1.9 Score=47.67 Aligned_cols=41 Identities=27% Similarity=0.498 Sum_probs=33.9
Q ss_pred cceeccccccccccCCCCcEEe-cCCCcchhhhHhhcccCCCccCCCCCCCc
Q psy15732 65 ALECRVCEDIFLTQGDKVPRLL-HCGHTVCLACLLRLPIKDDTITCPFDRQP 115 (550)
Q Consensus 65 ~l~C~iC~~~~~~~~~~~P~~l-~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~ 115 (550)
.-.|..|.-.+. - |.+- .|||+|...|+.. ....||.|+..
T Consensus 840 ~skCs~C~~~Ld---l--P~VhF~CgHsyHqhC~e~-----~~~~CP~C~~e 881 (933)
T KOG2114|consen 840 VSKCSACEGTLD---L--PFVHFLCGHSYHQHCLED-----KEDKCPKCLPE 881 (933)
T ss_pred eeeecccCCccc---c--ceeeeecccHHHHHhhcc-----CcccCCccchh
Confidence 358999999999 6 8665 9999999999982 45679999763
No 431
>KOG4445|consensus
Probab=79.03 E-value=0.63 Score=44.77 Aligned_cols=58 Identities=22% Similarity=0.386 Sum_probs=42.0
Q ss_pred CcceeccccccccccCCCCc-EE-ecCCCcchhhhHhhccc---------------------CCCccCCCCCCCcccCCC
Q psy15732 64 LALECRVCEDIFLTQGDKVP-RL-LHCGHTVCLACLLRLPI---------------------KDDTITCPFDRQPTPVGY 120 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P-~~-l~CgH~fC~~Cl~~~~~---------------------~~~~~~CP~Cr~~~~~~~ 120 (550)
....|.||+--|... | .+ ++|-|-|...|+.+++. ......||+||..+....
T Consensus 114 p~gqCvICLygfa~~----~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~ 189 (368)
T KOG4445|consen 114 PNGQCVICLYGFASS----PAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEE 189 (368)
T ss_pred CCCceEEEEEeecCC----CceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccc
Confidence 356899999999853 4 33 49999999999988654 112335999999887665
Q ss_pred CCccC
Q psy15732 121 SGVWG 125 (550)
Q Consensus 121 ~~~~~ 125 (550)
.++..
T Consensus 190 ~slk~ 194 (368)
T KOG4445|consen 190 NSLKI 194 (368)
T ss_pred cceec
Confidence 54444
No 432
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=78.43 E-value=42 Score=28.67 Aligned_cols=31 Identities=13% Similarity=0.069 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15732 355 ERLGCLVQLHDDMGFWLQEVAKLYLKCEQMI 385 (550)
Q Consensus 355 ~~~~~l~~~~~~l~~~~~~l~~~~~~~e~~l 385 (550)
..+..++....++...+..+..++..++..+
T Consensus 89 ~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 89 DEVTEVREDVSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555554443
No 433
>PHA03096 p28-like protein; Provisional
Probab=78.35 E-value=0.97 Score=44.36 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=32.0
Q ss_pred ceecccccccccc--CCCCcEEe-cCCCcchhhhHhhcccC-CCccCCCCCCCc
Q psy15732 66 LECRVCEDIFLTQ--GDKVPRLL-HCGHTVCLACLLRLPIK-DDTITCPFDRQP 115 (550)
Q Consensus 66 l~C~iC~~~~~~~--~~~~P~~l-~CgH~fC~~Cl~~~~~~-~~~~~CP~Cr~~ 115 (550)
-.|.||++...+. .+|-=-+| .|.|.||..|+..|... ...-.||.||.-
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 6899999987732 01111234 89999999999988652 122345555543
No 434
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=78.26 E-value=58 Score=37.18 Aligned_cols=39 Identities=15% Similarity=0.122 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 329 AYFNHLRESLLVQEAAATSAVDMFVRERLGCLVQLHDDM 367 (550)
Q Consensus 329 ~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~~~~~l 367 (550)
..+++..+.|++++..++..+.++..+.++..+.+.+.+
T Consensus 546 ~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~ 584 (771)
T TIGR01069 546 KELEQEMEELKERERNKKLELEKEAQEALKALKKEVESI 584 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555666666666555555555554443333
No 435
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=78.15 E-value=45 Score=38.10 Aligned_cols=45 Identities=11% Similarity=0.043 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 328 HAYFNHLRESLLVQEAAATSAVDMFVRERLGCLVQLHDDMGFWLQ 372 (550)
Q Consensus 328 ~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~~~~~l~~~~~ 372 (550)
...+++..+.+++++..++++..++....++..+.+.+.+-..++
T Consensus 550 ~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk 594 (782)
T PRK00409 550 KEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELR 594 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455556666666666665555555555554444444443
No 436
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=77.60 E-value=2.6 Score=28.51 Aligned_cols=40 Identities=18% Similarity=0.443 Sum_probs=21.7
Q ss_pred eccccccccccCCCCcEEe---cCCCcchhhhHhhcccCCCccCCCCC
Q psy15732 68 CRVCEDIFLTQGDKVPRLL---HCGHTVCLACLLRLPIKDDTITCPFD 112 (550)
Q Consensus 68 C~iC~~~~~~~~~~~P~~l---~CgH~fC~~Cl~~~~~~~~~~~CP~C 112 (550)
|.+|.++.. . -..- .|+=.+...|+..+|.......||.|
T Consensus 1 C~~C~~iv~---~--G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVT---Q--GQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-S---S--SEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHe---e--eccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 567777776 3 3333 48888889999999986555579987
No 437
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=77.54 E-value=5.7 Score=44.72 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=27.4
Q ss_pred CCCeEEEEecCCCCCCCC---CHHHHHHhcCCCcccCCCcEEEEEecccCC
Q psy15732 480 KDAALLLLANKQDIPGCE---TVESITEAFDLYKLCCGRSWHIQACNAQSG 527 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~---~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g 527 (550)
.++|++|++||+|+.++. ..+++.+.++...+ ..++++||.+|
T Consensus 126 ~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~-----~~~ipis~~~~ 171 (689)
T TIGR00484 126 YEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAV-----PIQLPIGAEDN 171 (689)
T ss_pred cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCce-----eEEeccccCCC
Confidence 358999999999998653 34556666554221 23455666555
No 438
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=77.46 E-value=1.7 Score=42.53 Aligned_cols=80 Identities=14% Similarity=0.158 Sum_probs=0.0
Q ss_pred EEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccC
Q psy15732 447 VVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQS 526 (550)
Q Consensus 447 ~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~ 526 (550)
.+++.+|+.+... .....++......++|++|++||+|+.++ +.++..+.+. ..+ ......+...+.+
T Consensus 90 ~~i~Vvd~~~g~~--------~~~~~~~~~~~~~~~p~iivvNK~D~~~~-~~~~~~~~l~-~~~--~~~~~~~~ip~~~ 157 (268)
T cd04170 90 AALVVVSAQSGVE--------VGTEKLWEFADEAGIPRIIFINKMDRERA-DFDKTLAALQ-EAF--GRPVVPLQLPIGE 157 (268)
T ss_pred EEEEEEeCCCCCC--------HHHHHHHHHHHHcCCCEEEEEECCccCCC-CHHHHHHHHH-HHh--CCCeEEEEecccC
Q ss_pred CCCHHHHHHHHH
Q psy15732 527 GEGLHEGLDWLS 538 (550)
Q Consensus 527 g~gi~e~f~~l~ 538 (550)
|.|+...++.+.
T Consensus 158 ~~~~~~~vd~~~ 169 (268)
T cd04170 158 GDDFKGVVDLLT 169 (268)
T ss_pred CCceeEEEEccc
No 439
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=76.83 E-value=1.1 Score=30.53 Aligned_cols=32 Identities=34% Similarity=0.829 Sum_probs=21.3
Q ss_pred EecCC-CcchhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 85 LLHCG-HTVCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 85 ~l~Cg-H~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
.+.|. |-.|..|+..++. ..-.||+|..+++.
T Consensus 15 Li~C~dHYLCl~CLt~ml~--~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLS--RSDRCPICGKPLPT 47 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-S--SSSEETTTTEE---
T ss_pred eeeecchhHHHHHHHHHhc--cccCCCcccCcCcc
Confidence 44665 8899999999887 55569999988653
No 440
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=76.56 E-value=56 Score=29.17 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy15732 354 RERLGCLVQLHDDMGFWLQEVAKLYLKCEQMILQ 387 (550)
Q Consensus 354 ~~~~~~l~~~~~~l~~~~~~l~~~~~~~e~~l~~ 387 (550)
..+...|+..++.|+..+..+..++...+.++.+
T Consensus 97 re~E~qLr~rRD~LErrl~~l~~tierAE~l~sq 130 (159)
T PF05384_consen 97 REREKQLRERRDELERRLRNLEETIERAENLVSQ 130 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677778888888888888888888887765
No 441
>KOG2129|consensus
Probab=76.39 E-value=96 Score=31.80 Aligned_cols=12 Identities=17% Similarity=0.124 Sum_probs=5.7
Q ss_pred ccccHHHHHHHH
Q psy15732 126 LKKNFALLELIE 137 (550)
Q Consensus 126 l~~n~~l~~~~~ 137 (550)
|..|+.+..+-.
T Consensus 100 fisntLlkkiqa 111 (552)
T KOG2129|consen 100 FISNTLLKKIQA 111 (552)
T ss_pred HHHHHHHHHHHH
Confidence 444555544443
No 442
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=76.27 E-value=68 Score=29.99 Aligned_cols=43 Identities=12% Similarity=0.110 Sum_probs=23.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15732 266 LVEIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEG 308 (550)
Q Consensus 266 ~l~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 308 (550)
|+....++.+..+...+........+.+......+..+.+.+.
T Consensus 77 pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~ 119 (204)
T PRK09174 77 RIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARA 119 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555666666655555555555555555554444444
No 443
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=76.19 E-value=50 Score=28.46 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 319 TGDQARAKVHAYFNHLRESLLVQEAAATSAVDMFVRERLGCLVQLHDDMGFWLQEVA 375 (550)
Q Consensus 319 ~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~~~~~l~~~~~~l~ 375 (550)
.++.++.++.....++-+.++++-...|.+|.--...-+..|...+..|...+..|.
T Consensus 73 ~~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l~ 129 (132)
T PF05597_consen 73 RVDDVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEALSARIDQLTAQVERLA 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666667777777777777777777766666666666666666666555543
No 444
>PRK00007 elongation factor G; Reviewed
Probab=76.11 E-value=10 Score=42.72 Aligned_cols=27 Identities=19% Similarity=0.088 Sum_probs=23.4
Q ss_pred cEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 516 SWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 516 ~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
-++++..||++|.||+..++.|...+.
T Consensus 254 ~~Pv~~gSa~~~~Gv~~LLd~I~~~lP 280 (693)
T PRK00007 254 IVPVLCGSAFKNKGVQPLLDAVVDYLP 280 (693)
T ss_pred EEEEEecccccCcCHHHHHHHHHHHCC
Confidence 356888899999999999999998774
No 445
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=75.98 E-value=45 Score=27.81 Aligned_cols=32 Identities=19% Similarity=0.168 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 319 TGDQARAKVHAYFNHLRESLLVQEAAATSAVD 350 (550)
Q Consensus 319 ~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~ 350 (550)
.++.+...|...-..|...|+......+..|.
T Consensus 47 ~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~ 78 (127)
T smart00502 47 AFDELRNALNKRKKQLLEDLEEQKENKLKVLE 78 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 446
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=75.97 E-value=63 Score=29.51 Aligned_cols=43 Identities=7% Similarity=0.105 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15732 266 LVEIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEG 308 (550)
Q Consensus 266 ~l~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 308 (550)
|+....++.+..+...+....+...+.+.....++..+...+.
T Consensus 55 PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~ 97 (181)
T PRK13454 55 RIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARA 97 (181)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666666666666655555544
No 447
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=75.93 E-value=75 Score=31.92 Aligned_cols=7 Identities=29% Similarity=0.871 Sum_probs=0.0
Q ss_pred ccccccc
Q psy15732 248 LMCFICK 254 (550)
Q Consensus 248 ~iC~~C~ 254 (550)
|+|..|.
T Consensus 1 PlC~eC~ 7 (314)
T PF04111_consen 1 PLCQECT 7 (314)
T ss_dssp -------
T ss_pred CCcHHHH
Confidence 5788885
No 448
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=75.64 E-value=2.7 Score=32.00 Aligned_cols=52 Identities=19% Similarity=0.378 Sum_probs=22.6
Q ss_pred cceecccccccccc--CCCCcEEe--cCCCcchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 65 ALECRVCEDIFLTQ--GDKVPRLL--HCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 65 ~l~C~iC~~~~~~~--~~~~P~~l--~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
.-.|.||.+..-.+ |+ |... .|+-..|+.|..--... +...||.|++.....
T Consensus 9 ~qiCqiCGD~VGl~~~Ge--~FVAC~eC~fPvCr~CyEYErke-g~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGE--VFVACHECAFPVCRPCYEYERKE-GNQVCPQCKTRYKRH 64 (80)
T ss_dssp S-B-SSS--B--B-SSSS--B--S-SSS-----HHHHHHHHHT-S-SB-TTT--B----
T ss_pred CcccccccCccccCCCCC--EEEEEcccCCccchhHHHHHhhc-CcccccccCCCcccc
Confidence 45899999987653 56 7776 89999999999765443 556799999776543
No 449
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=75.63 E-value=65 Score=29.48 Aligned_cols=61 Identities=15% Similarity=0.127 Sum_probs=42.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy15732 265 ALVEIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHLR 335 (550)
Q Consensus 265 ~~l~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~l~ 335 (550)
.|+....+..+..+...+........+........+..+...+. .........+...+...
T Consensus 47 kPI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~----------ea~~ii~~A~~~ae~~~ 107 (184)
T CHL00019 47 GVLSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAEL----------EADEIRVNGYSEIEREK 107 (184)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 36677777778888888888877777777777777777777666 55555555555554443
No 450
>KOG2034|consensus
Probab=75.56 E-value=1.1 Score=49.58 Aligned_cols=36 Identities=33% Similarity=0.635 Sum_probs=28.5
Q ss_pred cCCcceeccccccccccCCCCcEEe-cCCCcchhhhHhhcc
Q psy15732 62 LELALECRVCEDIFLTQGDKVPRLL-HCGHTVCLACLLRLP 101 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~~~P~~l-~CgH~fC~~Cl~~~~ 101 (550)
++..=.|.+|...+.. . |-.+ +|||.|.+.|+.+..
T Consensus 814 ~ep~d~C~~C~~~ll~--~--pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLI--K--PFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred ecCccchHHhcchhhc--C--cceeeeccchHHHHHHHHHH
Confidence 3445589999999883 4 7666 999999999997754
No 451
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=75.45 E-value=1.9e+02 Score=35.09 Aligned_cols=6 Identities=17% Similarity=0.346 Sum_probs=2.7
Q ss_pred chhHhh
Q psy15732 389 DARVLT 394 (550)
Q Consensus 389 ~~~~L~ 394 (550)
|...|.
T Consensus 769 D~~~I~ 774 (1201)
T PF12128_consen 769 DPERIQ 774 (1201)
T ss_pred CHHHHH
Confidence 444443
No 452
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=74.72 E-value=56 Score=28.27 Aligned_cols=44 Identities=9% Similarity=0.131 Sum_probs=32.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15732 265 ALVEIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEG 308 (550)
Q Consensus 265 ~~l~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 308 (550)
.|+....++.+..+...+........+........+..+...+.
T Consensus 28 ~pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ 71 (140)
T PRK07353 28 KPVGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARK 71 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777788887777777777777777777776666665
No 453
>PRK04023 DNA polymerase II large subunit; Validated
Probab=74.61 E-value=3.4 Score=46.79 Aligned_cols=104 Identities=16% Similarity=0.246 Sum_probs=55.8
Q ss_pred CCcCCCCCCCcCCccccccccccCCCCccccccCCCCCCCCCCCcccceecc--Ccc-chhhhccCCcceeccccccccc
Q psy15732 1 FKIDPACGDTIGARLSVLDTTRSSVLDTTRYSELPGTRYYPVLDTTRYSVLL--GTR-TTRILILELALECRVCEDIFLT 77 (550)
Q Consensus 1 ~~~~~~~~~~~g~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~-~~~~~~~~~~l~C~iC~~~~~~ 77 (550)
|+|.+-++-+||+|+-....+....+....-.--|-+. .+..+.++ +.. ...+..-.....|+-|.....
T Consensus 565 ~~ir~ra~trIG~RmGRPEKa~~RkMkP~~h~LFPiG~------~GG~~R~i~~A~~~~g~~eVEVg~RfCpsCG~~t~- 637 (1121)
T PRK04023 565 FEIRPKAPTRIGARMGRPEKAKERKMKPPVHVLFPIGN------AGGSTRDINKAAKYKGTIEVEIGRRKCPSCGKETF- 637 (1121)
T ss_pred cEEeccCCceeecccCCCcccccccCCCCCcccccccc------cCcccccHHHHHhcCCceeecccCccCCCCCCcCC-
Confidence 67888888899998865554444333322222112111 11111111 111 111222235678999998865
Q ss_pred cCCCCcEEecCCC-----cchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 78 QGDKVPRLLHCGH-----TVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 78 ~~~~~P~~l~CgH-----~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
. .+--.||. .||..|-... ....||.|..+....
T Consensus 638 --~--frCP~CG~~Te~i~fCP~CG~~~----~~y~CPKCG~El~~~ 676 (1121)
T PRK04023 638 --Y--RRCPFCGTHTEPVYRCPRCGIEV----EEDECEKCGREPTPY 676 (1121)
T ss_pred --c--ccCCCCCCCCCcceeCccccCcC----CCCcCCCCCCCCCcc
Confidence 3 22225985 4999994332 335699999988754
No 454
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=74.35 E-value=3 Score=36.64 Aligned_cols=51 Identities=18% Similarity=0.311 Sum_probs=37.7
Q ss_pred CCcceeccccccccccCCCCcEEec--CCCc---chhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLLH--CGHT---VCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l~--CgH~---fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
...-.|-||.+... +..-| |..+ ....|+.+|...++...|+.|+.+....
T Consensus 6 ~~~~~CRIC~~~~~------~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 6 LMDKCCWICKDEYD------VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCeeEecCCCCC------CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 34568999987754 22234 4443 3899999999987888999999887654
No 455
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=74.25 E-value=73 Score=29.39 Aligned_cols=50 Identities=8% Similarity=-0.034 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy15732 338 LLVQEAAATSAVDMFVRERLGCLVQLHDDMGFWLQEVAKLYLKCEQMILQ 387 (550)
Q Consensus 338 L~~~e~~ll~~l~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~e~~l~~ 387 (550)
|++.-+.-|......+...+..+..-...+.-.+..+...+.++..-++.
T Consensus 113 LR~~S~~kL~~tr~~Y~~L~~aM~~Ae~km~PVL~~~~D~vL~LKHNLNA 162 (201)
T PF11172_consen 113 LRRASEQKLAETRRRYAQLIKAMRRAESKMQPVLAAFRDQVLYLKHNLNA 162 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhccccH
Confidence 44444444555555555555666665666666666666666665555443
No 456
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=74.09 E-value=83 Score=29.99 Aligned_cols=12 Identities=25% Similarity=0.277 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q psy15732 337 SLLVQEAAATSA 348 (550)
Q Consensus 337 ~L~~~e~~ll~~ 348 (550)
.|..++..++++
T Consensus 43 ~L~~Er~~h~ee 54 (230)
T PF10146_consen 43 ELLQERMAHVEE 54 (230)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 457
>KOG1191|consensus
Probab=73.84 E-value=9.2 Score=40.12 Aligned_cols=98 Identities=13% Similarity=0.060 Sum_probs=51.7
Q ss_pred eEEEEEeeCCCC--CccchhhHHHHHHHHHHHh--hccCcCCCeEEEEecCCCCCCCCC--HHHHHHhcCCCcccCCCcE
Q psy15732 444 EMRVVTLGLDSA--DSADKERLPEALAELTKLI--AEKELKDAALLLLANKQDIPGCET--VESITEAFDLYKLCCGRSW 517 (550)
Q Consensus 444 ~~~~~~~~~d~~--D~~d~~~~~~~~~~l~~~~--~~~~~~~~pili~~NK~Dl~~~~~--~~~i~~~~~l~~~~~~~~~ 517 (550)
...+..+.+|+. |.+..-.+.+-......-+ ..+.+...|+++++||.|+....+ ......+... .. ....-
T Consensus 348 ~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~-~~~~~ 425 (531)
T KOG1191|consen 348 RADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EG-RSVFP 425 (531)
T ss_pred hcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-cc-Ccccc
Confidence 345677778873 3333323222222221111 112334579999999999954311 0000011110 00 01222
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 518 HIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 518 ~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
.+.++|++||+|++...+-|.+.+..
T Consensus 426 i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 426 IVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred eEEEeeechhhhHHHHHHHHHHHHHH
Confidence 34459999999999999999887743
No 458
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=73.80 E-value=1.2e+02 Score=32.16 Aligned_cols=43 Identities=9% Similarity=0.055 Sum_probs=28.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15732 266 LVEIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEG 308 (550)
Q Consensus 266 ~l~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 308 (550)
|+...+++.+..+...+....+...++.....+.+..+.+.+.
T Consensus 25 Pi~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ 67 (445)
T PRK13428 25 PVRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKA 67 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777776666666666665555555444
No 459
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=73.57 E-value=51 Score=29.38 Aligned_cols=54 Identities=9% Similarity=0.001 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 278 VKNASSNVQHLIEEITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHLRESLLVQ 341 (550)
Q Consensus 278 l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~l~~~L~~~ 341 (550)
....+..|+..+...+...+.....+..++. ++.....+++.....++..|...
T Consensus 39 ~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~----------~~~~~~~e~~~~~~~~~~vL~~~ 92 (160)
T PF13094_consen 39 NLHQLELLQEEIEKEEAALERDYEYLQELEK----------NAKALEREREEEEKKAHPVLQLD 92 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhccchhhccc
Confidence 3344446666666666666666666667766 66666666666666666555543
No 460
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=73.29 E-value=72 Score=28.88 Aligned_cols=60 Identities=12% Similarity=0.190 Sum_probs=42.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy15732 266 LVEIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHLR 335 (550)
Q Consensus 266 ~l~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~l~ 335 (550)
|+....+..+..+...+........+.+......+..+...+. .........+...+...
T Consensus 43 pI~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~----------ea~~ii~~a~~~a~~~~ 102 (174)
T PRK07352 43 FLGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQ----------EAERIRADAKARAEAIR 102 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 5677777778888888888888877777777777777777766 55555555555554443
No 461
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=73.01 E-value=3.5 Score=39.37 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=51.0
Q ss_pred eEEEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHH--------HHHHhcCCCcccCCC
Q psy15732 444 EMRVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVE--------SITEAFDLYKLCCGR 515 (550)
Q Consensus 444 ~~~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~--------~i~~~~~l~~~~~~~ 515 (550)
.+..+++++|+++..-.+.+......+..+.+. .+++.+-|+..|+|+...-... .+.+.+. ... ..
T Consensus 76 ~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~--sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~--~~~-~~ 150 (232)
T PF04670_consen 76 NVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQY--SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELE--DLG-IE 150 (232)
T ss_dssp TESEEEEEEETT-STCHHHHHHHHHHHHHHHHH--STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHH--HTT--T
T ss_pred ccCEEEEEEEcccccHHHHHHHHHHHHHHHHHh--CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhh--hcc-cc
Confidence 345677777776221122333333333333332 3678999999999984321111 1222222 110 12
Q ss_pred cEEEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 516 SWHIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 516 ~~~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
.+.++.||.-+ +.|.+||-.+...+..
T Consensus 151 ~~~~~~TSI~D-~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 151 DITFFLTSIWD-ESLYEAWSKIVQKLIP 177 (232)
T ss_dssp SEEEEEE-TTS-THHHHHHHHHHHTTST
T ss_pred ceEEEeccCcC-cHHHHHHHHHHHHHcc
Confidence 58999999998 6999999999887654
No 462
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=72.88 E-value=1.7e+02 Score=32.95 Aligned_cols=101 Identities=14% Similarity=0.192 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 292 ITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHLRESLLVQEA--AATSAVDMFVRERLGCLVQLHDDMGF 369 (550)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~l~~~L~~~e~--~ll~~l~~~~~~~~~~l~~~~~~l~~ 369 (550)
++......+..+..++. .++.-+..+.+.+.+|+..|..-++ .-...|......+-..+..+++.|..
T Consensus 613 LKANKqTAEvALanLKs----------KYE~EK~~v~etm~kLRnELK~LKEDAATFsSlRamFa~RCdEYvtQldemqr 682 (717)
T PF09730_consen 613 LKANKQTAEVALANLKS----------KYENEKAMVSETMMKLRNELKALKEDAATFSSLRAMFAARCDEYVTQLDEMQR 682 (717)
T ss_pred HHHHHHHHHHHHHHHHH----------HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445556666666 6666677777777777766654333 33455555666666666666666666
Q ss_pred HHHHHHHHHHHHHHHhccCchhHhhchhHHHHHHHHH
Q psy15732 370 WLQEVAKLYLKCEQMILQDDARVLTSGREIKEAIETI 406 (550)
Q Consensus 370 ~~~~l~~~~~~~e~~l~~~~~~~L~~~~~~~~~l~~~ 406 (550)
++...++--..+..++.. .++++=.+.++|+.+
T Consensus 683 qL~aAEdEKKTLNsLLRm----AIQQKLaLTQRLEdl 715 (717)
T PF09730_consen 683 QLAAAEDEKKTLNSLLRM----AIQQKLALTQRLEDL 715 (717)
T ss_pred HHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHhc
Confidence 666665544444444432 233333455555543
No 463
>PRK11820 hypothetical protein; Provisional
Probab=72.86 E-value=1e+02 Score=30.50 Aligned_cols=104 Identities=13% Similarity=0.069 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 274 LRSYVKNASSNVQHL-IEEITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHLRESLLVQEAAATSAVDMF 352 (550)
Q Consensus 274 ~~~~l~~~l~~l~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~ 352 (550)
....+...+..+... ..+-......+...+..+.. ....++...-...+.+.+.|.++-++++..++..
T Consensus 131 l~~al~~AL~~l~~~R~~EG~~L~~dl~~rl~~i~~----------~~~~i~~~~p~~~~~~~~rL~~rl~el~~~~d~~ 200 (288)
T PRK11820 131 LLAALDEALDDLIEMREREGAALKADLLQRLDAIEA----------LVAKIEALAPEILEEYRERLRERLEELLGELDEN 200 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhchHHHHHHHHHHHHHHHHHHhhcCHH
Confidence 333444444443332 22333334444445555544 4444444444555555555555555554444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy15732 353 VRERLGCLVQLHDDMGFWLQEVAKLYLKCEQMILQ 387 (550)
Q Consensus 353 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~~e~~l~~ 387 (550)
.-...-.+-..+.++.+.+.+|.+-+....+.+..
T Consensus 201 Rl~qEval~adK~DI~EEi~RL~sHl~~f~~~L~~ 235 (288)
T PRK11820 201 RLEQEVALLAQKADIAEELDRLKSHLKEFREILKK 235 (288)
T ss_pred HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhc
Confidence 33334445555566666666666666666666654
No 464
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=72.78 E-value=1.7e+02 Score=35.46 Aligned_cols=34 Identities=6% Similarity=0.194 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15732 275 RSYVKNASSNVQHLIEEITESVNTVDLVVSKIEG 308 (550)
Q Consensus 275 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 308 (550)
.+.+...+..+....+++++.+......+.....
T Consensus 609 l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~ 642 (1201)
T PF12128_consen 609 LEQAEDQLQSAEERQEELEKQLKQINKKIEELKR 642 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433
No 465
>KOG1707|consensus
Probab=72.69 E-value=13 Score=39.89 Aligned_cols=74 Identities=16% Similarity=0.147 Sum_probs=51.6
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC-----CCHHHHHHhcCCCcccCCCcEEEEEeccc-CCCC
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC-----ETVESITEAFDLYKLCCGRSWHIQACNAQ-SGEG 529 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~-----~~~~~i~~~~~l~~~~~~~~~~~~~~SA~-~g~g 529 (550)
|++++.+|+-.....+.. .. ...+|+++||.|.||... +.+++....++++. +.. .|.+ .|.
T Consensus 504 DsS~p~sf~~~a~v~~~~-~~--~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~-----P~~---~S~~~~~s- 571 (625)
T KOG1707|consen 504 DSSNPRSFEYLAEVYNKY-FD--LYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPP-----PIH---ISSKTLSS- 571 (625)
T ss_pred ccCCchHHHHHHHHHHHh-hh--ccCCceEEEeeccccchhhhccCCChHHHHHhcCCCC-----Cee---eccCCCCC-
Confidence 788888887766555433 22 267999999999999543 46788999888743 333 3444 344
Q ss_pred HHHHHHHHHHHHH
Q psy15732 530 LHEGLDWLSRQLI 542 (550)
Q Consensus 530 i~e~f~~l~~~~~ 542 (550)
.+.|..|+....
T Consensus 572 -~~lf~kL~~~A~ 583 (625)
T KOG1707|consen 572 -NELFIKLATMAQ 583 (625)
T ss_pred -chHHHHHHHhhh
Confidence 889999987653
No 466
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=72.68 E-value=74 Score=28.79 Aligned_cols=58 Identities=0% Similarity=-0.078 Sum_probs=38.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHH
Q psy15732 266 LVEIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNH 333 (550)
Q Consensus 266 ~l~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~ 333 (550)
|+....+..+..+...+........+.+......+..+...+. ....+....+...+.
T Consensus 42 pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~----------ea~~ii~~a~~~a~~ 99 (173)
T PRK13453 42 PLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQE----------EVQKILEDAKVQARQ 99 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 5667777777777777777777777777777777766666665 555555444444433
No 467
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=72.34 E-value=75 Score=28.72 Aligned_cols=59 Identities=12% Similarity=0.070 Sum_probs=39.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHH
Q psy15732 266 LVEIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHL 334 (550)
Q Consensus 266 ~l~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~l 334 (550)
|+....+..+..+...+....+...+........+..+...+. .............+..
T Consensus 40 pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~----------ea~~ii~~A~~ea~~~ 98 (173)
T PRK13460 40 VILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKD----------EANAIVAEAKSDALKL 98 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 5677777777788887777777777777777777766666665 5554444444444433
No 468
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=72.30 E-value=1.3e+02 Score=33.03 Aligned_cols=7 Identities=57% Similarity=1.094 Sum_probs=4.0
Q ss_pred cCCCCCC
Q psy15732 3 IDPACGD 9 (550)
Q Consensus 3 ~~~~~~~ 9 (550)
|+|+.|+
T Consensus 45 I~p~~~~ 51 (594)
T PF05667_consen 45 IDPSLGS 51 (594)
T ss_pred hCccccC
Confidence 5665554
No 469
>KOG0994|consensus
Probab=71.93 E-value=1.5e+02 Score=34.78 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=14.2
Q ss_pred ccccccccccCCCCcEEecCCCcchhhhH
Q psy15732 69 RVCEDIFLTQGDKVPRLLHCGHTVCLACL 97 (550)
Q Consensus 69 ~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl 97 (550)
.+|... . . |-...||-.-|+.|-
T Consensus 1374 ~vCG~p-~---a--pC~s~CGG~gC~~~~ 1396 (1758)
T KOG0994|consen 1374 QVCGAP-G---A--PCDSLCGGAGCRQDG 1396 (1758)
T ss_pred HhcCCC-C---C--CCCCCCCCCCCCCCC
Confidence 355555 4 5 666677776666654
No 470
>KOG0461|consensus
Probab=71.62 E-value=5 Score=39.98 Aligned_cols=57 Identities=21% Similarity=0.345 Sum_probs=35.0
Q ss_pred eEEEEecCCCC-CC---CCCHHH----HHHhcCCCcccCCCcEEEEEecccCC----CCHHHHHHHHHHHH
Q psy15732 483 ALLLLANKQDI-PG---CETVES----ITEAFDLYKLCCGRSWHIQACNAQSG----EGLHEGLDWLSRQL 541 (550)
Q Consensus 483 pili~~NK~Dl-~~---~~~~~~----i~~~~~l~~~~~~~~~~~~~~SA~~g----~gi~e~f~~l~~~~ 541 (550)
.++||.||+|+ +. +.-.++ ++.-|+...+ +.+.+++++||+.| ++|.|...-|...+
T Consensus 124 klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f--~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 124 KLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGF--DGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred ceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCc--CCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 36777888886 33 112222 2333332233 55689999999999 67777666666555
No 471
>KOG0804|consensus
Probab=71.56 E-value=1.3e+02 Score=31.36 Aligned_cols=37 Identities=11% Similarity=-0.065 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15732 349 VDMFVRERLGCLVQLHDDMGFWLQEVAKLYLKCEQMI 385 (550)
Q Consensus 349 l~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~e~~l 385 (550)
|.+.......++.+..++....+...+..+..+++.+
T Consensus 408 l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQl 444 (493)
T KOG0804|consen 408 LIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQL 444 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555666666666666666665554
No 472
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=70.97 E-value=1.8 Score=29.95 Aligned_cols=42 Identities=24% Similarity=0.452 Sum_probs=26.4
Q ss_pred eccccccccccCCCCcEEecCCC-----cchhhhHhhcccCCCccCCCCC
Q psy15732 68 CRVCEDIFLTQGDKVPRLLHCGH-----TVCLACLLRLPIKDDTITCPFD 112 (550)
Q Consensus 68 C~iC~~~~~~~~~~~P~~l~CgH-----~fC~~Cl~~~~~~~~~~~CP~C 112 (550)
|-||++...+. + |.+.||+= .....||.+|+...+...|++|
T Consensus 1 CrIC~~~~~~~-~--~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEED-E--PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSS-S---EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCC-C--ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 67888887733 3 67778762 3467899999886566679887
No 473
>KOG0250|consensus
Probab=70.93 E-value=2.1e+02 Score=33.36 Aligned_cols=12 Identities=17% Similarity=0.434 Sum_probs=6.1
Q ss_pred HHHHHHHHHHhh
Q psy15732 398 EIKEAIETIEKY 409 (550)
Q Consensus 398 ~~~~~l~~~~~~ 409 (550)
.+-++|..+...
T Consensus 476 ~m~~lL~~I~r~ 487 (1074)
T KOG0250|consen 476 NMPQLLRAIERR 487 (1074)
T ss_pred hhHHHHHHHHHH
Confidence 455555555443
No 474
>KOG3039|consensus
Probab=70.61 E-value=2.5 Score=39.63 Aligned_cols=35 Identities=14% Similarity=0.077 Sum_probs=31.0
Q ss_pred cCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcc
Q psy15732 62 LELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLP 101 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~ 101 (550)
+.+.--|++|++++. + |++.+=||.||+.||..++
T Consensus 40 iK~FdcCsLtLqPc~---d--Pvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCR---D--PVITPDGYLFDREAILEYI 74 (303)
T ss_pred cCCcceeeeeccccc---C--CccCCCCeeeeHHHHHHHH
Confidence 446668899999999 9 9999999999999997765
No 475
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=70.60 E-value=83 Score=28.49 Aligned_cols=61 Identities=11% Similarity=0.141 Sum_probs=40.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy15732 265 ALVEIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHLR 335 (550)
Q Consensus 265 ~~l~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~l~ 335 (550)
.|+....++.+..+...+........+........+..+...+. .+.......+...+...
T Consensus 41 kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~----------ea~~ii~~A~~~a~~~~ 101 (175)
T PRK14472 41 GPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADA----------EADKIIREGKEYAEKLR 101 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 36677777777888888877777777777777777776666666 55555555444444433
No 476
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=70.13 E-value=56 Score=27.75 Aligned_cols=43 Identities=7% Similarity=0.109 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15732 266 LVEIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEG 308 (550)
Q Consensus 266 ~l~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 308 (550)
|+.......+..+...+........+.......++..+...+.
T Consensus 23 pi~~~l~~R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ 65 (132)
T PF00430_consen 23 PIKKFLDERKAKIQSELEEAEELKEEAEQLLAEYEEKLAEARE 65 (132)
T ss_dssp HHHHHCS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555566666666666666666555555555555544
No 477
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=70.13 E-value=92 Score=31.93 Aligned_cols=17 Identities=6% Similarity=0.288 Sum_probs=14.6
Q ss_pred cccHHHHHHHHHHHhcc
Q psy15732 127 KKNFALLELIEKIQTND 143 (550)
Q Consensus 127 ~~n~~l~~~~~~~~~~~ 143 (550)
.+|..+.+|+..++...
T Consensus 68 DPn~~~~~Il~~lr~~g 84 (359)
T PF10498_consen 68 DPNATISNILDELRKLG 84 (359)
T ss_pred CHHHHHHHHHHHHHccC
Confidence 67999999999998865
No 478
>KOG0458|consensus
Probab=70.08 E-value=3.9 Score=43.61 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=34.2
Q ss_pred eEEEEecCCCCCCC--CCHHHHHHhcC-----CCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 483 ALLLLANKQDIPGC--ETVESITEAFD-----LYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 483 pili~~NK~Dl~~~--~~~~~i~~~~~-----l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
-++|+.||+|+.+= --.++|...++ .-.+ .+..+.|++||+.+|+|+...
T Consensus 317 qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf-~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 317 QLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGF-KESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred eEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCc-ccCCcceEecccccCCccccc
Confidence 57889999999542 23455554443 1223 367789999999999997543
No 479
>KOG3905|consensus
Probab=69.93 E-value=4.4 Score=40.07 Aligned_cols=60 Identities=10% Similarity=0.144 Sum_probs=40.7
Q ss_pred CCCeEEEEecCCCCCCCCC---------HHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCET---------VESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~---------~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
-++|||||..|+|+...+. .+-|...+. ++.-..+..++.||+|...||+-...+|+.++
T Consensus 221 lGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lR--kFCLr~GaaLiyTSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 221 LGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLR--KFCLRYGAALIYTSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred CCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHH--HHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence 4699999999999843211 111222221 11114456789999999999999999998865
No 480
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=69.87 E-value=9.1 Score=36.35 Aligned_cols=14 Identities=29% Similarity=0.216 Sum_probs=12.5
Q ss_pred CCeEEEEecCCCCC
Q psy15732 481 DAALLLLANKQDIP 494 (550)
Q Consensus 481 ~~pili~~NK~Dl~ 494 (550)
++|++|++||+|+.
T Consensus 125 ~~p~ilviNKiD~~ 138 (222)
T cd01885 125 RVKPVLVINKIDRL 138 (222)
T ss_pred CCCEEEEEECCCcc
Confidence 57999999999985
No 481
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=69.59 E-value=1.1e+02 Score=29.48 Aligned_cols=130 Identities=8% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 268 EIEAENLRSYVKNASSNVQHLIE-EITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHLRESLLVQEAAAT 346 (550)
Q Consensus 268 ~~a~~~~~~~l~~~l~~l~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll 346 (550)
.++...++..+...+..+...+. .+......+...+..+.. ....+...|...-......++..-..+.
T Consensus 58 ~E~~~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~----------ri~~L~~~i~ee~~~r~~~ie~~~~~l~ 127 (247)
T PF06705_consen 58 VESNKKLQSKFEEQINNMQERVENQISEKQEQLQSRLDSLND----------RIEALEEEIQEEKEERPQDIEELNQELV 127 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHhhchhHHHHHHHHHH
Q psy15732 347 SAVDMFVRERLGCLVQLHDDMGFWLQEVAKLYLKCEQMILQDDARVLTSGREIKEAIETIE 407 (550)
Q Consensus 347 ~~l~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~e~~l~~~~~~~L~~~~~~~~~l~~~~ 407 (550)
..|.......-..-....+.-...+..|......+...+......--.....+...++.+.
T Consensus 128 ~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~ 188 (247)
T PF06705_consen 128 RELNELQEAFENERNEREEREENILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVK 188 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>PRK09039 hypothetical protein; Validated
Probab=69.53 E-value=1.4e+02 Score=30.52 Aligned_cols=33 Identities=12% Similarity=-0.040 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy15732 355 ERLGCLVQLHDDMGFWLQEVAKLYLKCEQMILQ 387 (550)
Q Consensus 355 ~~~~~l~~~~~~l~~~~~~l~~~~~~~e~~l~~ 387 (550)
..+..|+.++..|..++..++..+..++.....
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~ 169 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDASEKRDRE 169 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888888888888888777776644
No 483
>KOG0129|consensus
Probab=69.22 E-value=2.5 Score=43.98 Aligned_cols=42 Identities=26% Similarity=0.604 Sum_probs=34.5
Q ss_pred cCCCCccc-----ccccccccc--chhhhhHhhhhhcCCCcccCCcccc
Q psy15732 169 IKCDEDES-----HIAVLYCTV--CASHLCEQCASDSHATRTLQKHRRI 210 (550)
Q Consensus 169 ~~C~~~~~-----~~A~~~C~~--C~~~lC~~C~~~h~~~~~~~~H~~~ 210 (550)
..|++|.. ..|-+||.+ |-.+||+.|+...|.......|+-+
T Consensus 456 q~CdeC~g~~c~~q~aPfFC~n~~C~QYYCe~CWa~~HS~~~r~~HkPl 504 (520)
T KOG0129|consen 456 QLCDECGGRRCGGQFAPFFCRNATCFQYYCESCWAKIHSGPGREHHKPL 504 (520)
T ss_pred cchhhhcCeeccCccCCcccCCccHHhhhchHHHHHhhcCCchhcCCce
Confidence 34887776 889999976 9999999999999998777777543
No 484
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=69.22 E-value=85 Score=28.04 Aligned_cols=59 Identities=7% Similarity=0.049 Sum_probs=39.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHH
Q psy15732 265 ALVEIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNH 333 (550)
Q Consensus 265 ~~l~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~ 333 (550)
.|+....++.+..+.+.+........+........+..+...+. .+..+....+.....
T Consensus 31 kpi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~----------ea~~ii~~A~~~a~~ 89 (164)
T PRK14473 31 RPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQ----------EAAKIVAQAQERARA 89 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 36677777777778887777777777777777777776666665 555555544444433
No 485
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=69.06 E-value=88 Score=28.15 Aligned_cols=43 Identities=7% Similarity=-0.009 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15732 266 LVEIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEG 308 (550)
Q Consensus 266 ~l~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 308 (550)
|+....++.++.+.+.+....+...+.+......+..+...+.
T Consensus 46 Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~ 88 (167)
T PRK08475 46 PLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKE 88 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666665555555
No 486
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=69.01 E-value=1e+02 Score=30.74 Aligned_cols=15 Identities=40% Similarity=0.890 Sum_probs=12.5
Q ss_pred cchhhhhHhhhhhcC
Q psy15732 185 VCASHLCEQCASDSH 199 (550)
Q Consensus 185 ~C~~~lC~~C~~~h~ 199 (550)
.|+-.||..|+....
T Consensus 25 ~CGH~~C~sCv~~l~ 39 (309)
T TIGR00570 25 VCGHTLCESCVDLLF 39 (309)
T ss_pred CCCCcccHHHHHHHh
Confidence 688899999998753
No 487
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=68.82 E-value=94 Score=28.40 Aligned_cols=42 Identities=7% Similarity=0.066 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15732 267 VEIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEG 308 (550)
Q Consensus 267 l~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 308 (550)
+....+..+..+...+....+...+.+......+..+...+.
T Consensus 52 v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ 93 (184)
T PRK13455 52 IGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQE 93 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777777777777777777666666655
No 488
>KOG0972|consensus
Probab=68.77 E-value=1.2e+02 Score=29.60 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CchhHhhchhHHHHHHHHHH
Q psy15732 355 ERLGCLVQLHDDMGFWLQEVAKLYLKCEQMILQ-DDARVLTSGREIKEAIETIE 407 (550)
Q Consensus 355 ~~~~~l~~~~~~l~~~~~~l~~~~~~~e~~l~~-~~~~~L~~~~~~~~~l~~~~ 407 (550)
.....+.++-+.|...+..++..-.++++.-.. +|..-|. .++..+..++
T Consensus 298 q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplv---kIkqavsKLk 348 (384)
T KOG0972|consen 298 QASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLV---KIKQAVSKLK 348 (384)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHH---HHHHHHHHHH
Confidence 333334444444555555555555555555443 4444444 3555555544
No 489
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=68.68 E-value=1e+02 Score=28.79 Aligned_cols=85 Identities=16% Similarity=0.173 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 270 EAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHLRESLLVQEAAATSAV 349 (550)
Q Consensus 270 a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l 349 (550)
.+..+..-|.+.-..+...++..+....+.+....+.+. ...+.+.+.....+..+...+......+..+
T Consensus 74 ~~~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~----------~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a 143 (204)
T PRK09174 74 ILPRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQ----------ELAQARAKAHSIAQAAREAAKAKAEAERAAI 143 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777777777777777777777 7777777777777766666666666666666
Q ss_pred HHHHHHHHHHHHHHH
Q psy15732 350 DMFVRERLGCLVQLH 364 (550)
Q Consensus 350 ~~~~~~~~~~l~~~~ 364 (550)
+.+....+...+..+
T Consensus 144 ~~ea~~~l~~Ae~~I 158 (204)
T PRK09174 144 EASLEKKLKEAEARI 158 (204)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666555554444443
No 490
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=68.31 E-value=96 Score=28.32 Aligned_cols=84 Identities=8% Similarity=0.026 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 271 AENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHLRESLLVQEAAATSAVD 350 (550)
Q Consensus 271 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~ 350 (550)
+.....-+.+.-..+...++..+......+....+.+. .....+.+.....+......+.....++...+
T Consensus 53 ~~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~----------~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~ 122 (181)
T PRK13454 53 LPRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNK----------ALADARAEAQRIVAETRAEIQAELDVAIAKAD 122 (181)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777777777777777777 77777777777777776666666666776666
Q ss_pred HHHHHHHHHHHHHH
Q psy15732 351 MFVRERLGCLVQLH 364 (550)
Q Consensus 351 ~~~~~~~~~l~~~~ 364 (550)
.+........+..+
T Consensus 123 ~e~~~~~aea~~~I 136 (181)
T PRK13454 123 AEIAAKAAESEKRI 136 (181)
T ss_pred HHHHHHHHHHHHHH
Confidence 66555555544443
No 491
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=68.24 E-value=89 Score=27.91 Aligned_cols=61 Identities=8% Similarity=0.060 Sum_probs=43.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy15732 265 ALVEIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHLR 335 (550)
Q Consensus 265 ~~l~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~l~ 335 (550)
.|+....+..+..+...+........+.+.....++..+...+. .........+...+...
T Consensus 31 ~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~----------ea~~ii~~A~~~a~~~~ 91 (164)
T PRK14471 31 KPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARA----------ERDAILKEAREIKEKMI 91 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 46777778888888888888888888888888777777777766 55555555555444443
No 492
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=67.45 E-value=46 Score=30.61 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 319 TGDQARAKVHAYFNHLRESLLVQEAAATSAVDMFVRERLGC 359 (550)
Q Consensus 319 ~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~ 359 (550)
.++..++.+.+.|+.....|+++-..--.+|.+.....+..
T Consensus 67 ~Ae~~k~~m~~rFQ~~v~aLE~e~~~er~qL~~~H~qRV~a 107 (193)
T PF12925_consen 67 KAEQFKKEMTQRFQKTVQALEQEAAAERQQLVETHQQRVQA 107 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999999988777777777666665543
No 493
>PHA02862 5L protein; Provisional
Probab=66.84 E-value=4.4 Score=34.88 Aligned_cols=47 Identities=17% Similarity=0.402 Sum_probs=36.2
Q ss_pred eeccccccccccCCCCcEEecCC-----CcchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 67 ECRVCEDIFLTQGDKVPRLLHCG-----HTVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 67 ~C~iC~~~~~~~~~~~P~~l~Cg-----H~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
.|-||.+.-. + . .-||. .-..+.|+.+|.+..+...||.|+.+....
T Consensus 4 iCWIC~~~~~---e--~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 4 ICWICNDVCD---E--R-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred EEEEecCcCC---C--C-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 6889998865 4 2 34553 345799999999877888999999998754
No 494
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=66.82 E-value=93 Score=27.62 Aligned_cols=44 Identities=11% Similarity=0.069 Sum_probs=30.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15732 265 ALVEIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEG 308 (550)
Q Consensus 265 ~~l~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 308 (550)
.||....+.....+...+....+..+++.......+..+...+.
T Consensus 27 kPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~ 70 (154)
T PRK06568 27 KAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLET 70 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777777777776666666666655554
No 495
>KOG0466|consensus
Probab=66.80 E-value=3.9 Score=39.99 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=0.0
Q ss_pred EEEEecCCCCCCCCCHHHHHHhcC--CCcccCCCcEEEEEecccCCCCHHHHHHHHHHHH
Q psy15732 484 LLLLANKQDIPGCETVESITEAFD--LYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 484 ili~~NK~Dl~~~~~~~~i~~~~~--l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
|+|+-||+||.......|--+.+. +..-. -...+++++||.-+.||+-+.++|.+.+
T Consensus 182 iiilQNKiDli~e~~A~eq~e~I~kFi~~t~-ae~aPiiPisAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 182 IIILQNKIDLIKESQALEQHEQIQKFIQGTV-AEGAPIIPISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred EEEEechhhhhhHHHHHHHHHHHHHHHhccc-cCCCceeeehhhhccChHHHHHHHHhcC
No 496
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=66.71 E-value=73 Score=27.19 Aligned_cols=61 Identities=11% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy15732 267 VEIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHLRES 337 (550)
Q Consensus 267 l~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~l~~~ 337 (550)
+.++....|..|...++.+..++++..+....+++....+.. ....+...+......+..+
T Consensus 55 vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~----------dv~~i~~dv~~v~~~V~~L 115 (126)
T PF07889_consen 55 VSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVRE----------DVSQIGDDVDSVQQMVEGL 115 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh----------hHHHHHHHHHHHHHHHHHH
No 497
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=66.15 E-value=1.4e+02 Score=29.54 Aligned_cols=114 Identities=11% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 267 VEIEAENLRSYVKNASSNVQH-LIEEITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHLRESLLVQEAAA 345 (550)
Q Consensus 267 l~~a~~~~~~~l~~~l~~l~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~l~~~L~~~e~~l 345 (550)
.++........+...+..+.. +..+-......+...+..+.. ....++...-...+...+.|.++-+++
T Consensus 126 ~~~~~~~l~~al~~AL~~l~~mR~~EG~~L~~dl~~rl~~i~~----------~v~~i~~~~p~~~~~~~~rL~~rl~el 195 (291)
T TIGR00255 126 QDAIYALILGALEEALLDFINMREFEGENLKSDIVQRLDLIER----------EVKKVRSAMPDILQWQRERLKARIEDL 195 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhchHHHHHHHHHHHHHHHHH
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch
Q psy15732 346 T-SAVDMFVRERLGCLVQLHDDMGFWLQEVAKLYLKCEQMILQDDA 390 (550)
Q Consensus 346 l-~~l~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~e~~l~~~~~ 390 (550)
+ ..++...-...-.+-..+.++.+.+.+|.+-+....+.+..+..
T Consensus 196 ~~~~id~~Rl~qEval~adK~DI~EEl~RL~sHl~~f~~~L~~~~~ 241 (291)
T TIGR00255 196 AQEFLDLNRLEQEAALLAQRIDIAEEIDRLDSHVKEFYNILKKGEA 241 (291)
T ss_pred hcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcCCC
No 498
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=65.97 E-value=21 Score=36.42 Aligned_cols=78 Identities=17% Similarity=0.227 Sum_probs=0.0
Q ss_pred EEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCC
Q psy15732 448 VTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSG 527 (550)
Q Consensus 448 ~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g 527 (550)
++..+--.|..+.++|+...+++..++.- ...+|+.| .+.++........... ..-.++|.+||.||
T Consensus 258 viVvvTK~D~~~ddr~~~v~~ei~~~Lk~--v~Rip~~v----------k~~~d~v~aa~a~k~~-~~vvPi~~tSsVTg 324 (527)
T COG5258 258 VIVVVTKIDMVPDDRFQGVVEEISALLKR--VGRIPLIV----------KDTDDVVLAAKAMKAG-RGVVPIFYTSSVTG 324 (527)
T ss_pred EEEEEEecccCcHHHHHHHHHHHHHHHHH--hcccceee----------eccchhHHhhhhhhcC-CceEEEEEEecccC
Q ss_pred CCHHHHHHHHH
Q psy15732 528 EGLHEGLDWLS 538 (550)
Q Consensus 528 ~gi~e~f~~l~ 538 (550)
+|++-..+.++
T Consensus 325 ~GldlL~e~f~ 335 (527)
T COG5258 325 EGLDLLDEFFL 335 (527)
T ss_pred ccHHHHHHHHH
No 499
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=65.88 E-value=1.2e+02 Score=28.54 Aligned_cols=106 Identities=12% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 269 IEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHLRESLLVQEAAATSA 348 (550)
Q Consensus 269 ~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~ 348 (550)
+.+++-...|...+..+...+..+...+..+......+.. ..+.....+.....+....|......|-..
T Consensus 19 d~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~----------~~~~~~~~~~~~~~~A~~Al~~g~edLAr~ 88 (221)
T PF04012_consen 19 DKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLER----------KLDEAEEEAEKWEKQAELALAAGREDLARE 88 (221)
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 349 VDMFVRERLGCLVQLHDDMGFWLQEVAKLYLKCEQM 384 (550)
Q Consensus 349 l~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~e~~ 384 (550)
.-.........+......+......+..+...+.++
T Consensus 89 al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l 124 (221)
T PF04012_consen 89 ALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEEL 124 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>KOG3268|consensus
Probab=65.88 E-value=4.4 Score=35.94 Aligned_cols=62 Identities=21% Similarity=0.409 Sum_probs=0.0
Q ss_pred hhccCCcceeccccccccccCCCCcEEe----cCCCcchhhhHhhccc----CCCcc-----CCCCCCCcccCCCCC
Q psy15732 59 ILILELALECRVCEDIFLTQGDKVPRLL----HCGHTVCLACLLRLPI----KDDTI-----TCPFDRQPTPVGYSG 122 (550)
Q Consensus 59 ~~~~~~~l~C~iC~~~~~~~~~~~P~~l----~CgH~fC~~Cl~~~~~----~~~~~-----~CP~Cr~~~~~~~~~ 122 (550)
....++...|.||+-+--..-. |-.. .||..|..-|+..|+. ..+.| .||.|..++.+.-.+
T Consensus 159 Lekdd~~~~cgicyayqldGTi--pDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKmSg 233 (234)
T KOG3268|consen 159 LEKDDELGACGICYAYQLDGTI--PDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKMSG 233 (234)
T ss_pred cCcchhhhcccceeeeecCCcc--ccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeeccC
Done!