Query psy15732
Match_columns 550
No_of_seqs 547 out of 3643
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 20:00:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15732.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15732hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l82_B F-box only protein 4; T 99.6 7.6E-16 2.6E-20 140.1 5.6 93 446-544 127-224 (227)
2 3l2o_B F-box only protein 4; s 99.5 8.8E-15 3E-19 139.7 6.2 86 456-544 219-309 (312)
3 3ztg_A E3 ubiquitin-protein li 99.5 1.6E-14 5.5E-19 116.6 6.0 74 61-143 9-83 (92)
4 1jm7_B BARD1, BRCA1-associated 99.5 2.1E-14 7.1E-19 121.4 4.1 72 58-143 15-87 (117)
5 2jun_A Midline-1; B-BOX, TRIM, 99.4 8.3E-14 2.8E-18 114.5 4.0 92 169-268 4-100 (101)
6 1fzq_A ADP-ribosylation factor 99.4 1.4E-12 4.7E-17 119.3 11.7 88 456-544 92-179 (181)
7 1t1h_A Gspef-atpub14, armadill 99.4 1.3E-13 4.3E-18 107.6 4.0 70 62-142 5-74 (78)
8 2kr4_A Ubiquitin conjugation f 99.4 2E-13 6.9E-18 107.9 4.6 70 61-142 10-79 (85)
9 1r8s_A ADP-ribosylation factor 99.4 3.3E-12 1.1E-16 114.3 11.8 88 456-544 76-163 (164)
10 3fl2_A E3 ubiquitin-protein li 99.4 3E-13 1E-17 115.6 4.6 73 59-141 46-118 (124)
11 2kre_A Ubiquitin conjugation f 99.4 5.5E-13 1.9E-17 108.6 5.8 71 61-143 25-95 (100)
12 1wgm_A Ubiquitin conjugation f 99.3 1.2E-12 4.1E-17 106.1 6.7 71 61-143 18-89 (98)
13 2egp_A Tripartite motif-contai 99.3 7.7E-14 2.6E-18 109.2 -0.7 66 60-135 7-77 (79)
14 2y43_A E3 ubiquitin-protein li 99.3 6.3E-13 2.2E-17 108.7 4.6 73 59-143 16-89 (99)
15 2b6h_A ADP-ribosylation factor 99.3 6.9E-12 2.3E-16 115.8 11.7 87 456-543 105-191 (192)
16 4dkx_A RAS-related protein RAB 99.3 2E-12 6.8E-17 121.7 8.1 92 444-542 61-175 (216)
17 1upt_A ARL1, ADP-ribosylation 99.3 9.5E-12 3.3E-16 112.0 12.2 88 456-544 83-170 (171)
18 1moz_A ARL1, ADP-ribosylation 99.3 1E-11 3.5E-16 113.3 12.4 88 456-544 94-181 (183)
19 1ksh_A ARF-like protein 2; sma 99.3 1.6E-11 5.4E-16 112.4 12.8 88 456-544 94-181 (186)
20 1f6b_A SAR1; gtpases, N-termin 99.3 7.7E-12 2.6E-16 116.1 10.7 86 456-541 101-197 (198)
21 3lrq_A E3 ubiquitin-protein li 99.3 3.3E-13 1.1E-17 110.5 1.1 75 58-143 15-90 (100)
22 2x77_A ADP-ribosylation factor 99.3 1.8E-11 6.1E-16 112.4 13.0 89 456-545 98-186 (189)
23 1m2o_B GTP-binding protein SAR 99.3 1.1E-11 3.7E-16 114.3 11.5 85 456-540 99-189 (190)
24 1zj6_A ADP-ribosylation factor 99.3 1.5E-11 5.3E-16 112.7 12.3 87 456-543 92-178 (187)
25 1z6u_A NP95-like ring finger p 99.3 1.2E-12 4.2E-17 115.1 4.6 72 60-141 73-144 (150)
26 2h17_A ADP-ribosylation factor 99.3 1.2E-11 4E-16 113.0 11.0 84 456-540 97-180 (181)
27 4bas_A ADP-ribosylation factor 99.3 6.8E-12 2.3E-16 116.1 9.4 89 456-544 95-190 (199)
28 2yur_A Retinoblastoma-binding 99.3 1.6E-12 5.4E-17 100.1 3.8 55 61-120 11-66 (74)
29 2ckl_A Polycomb group ring fin 99.3 2.6E-12 8.8E-17 106.9 5.4 75 59-141 9-84 (108)
30 2ecw_A Tripartite motif-contai 99.3 2.5E-13 8.4E-18 107.9 -0.9 66 60-135 14-83 (85)
31 2yu4_A E3 SUMO-protein ligase 99.3 2.6E-12 9E-17 103.6 4.9 72 62-143 4-83 (94)
32 1zd9_A ADP-ribosylation factor 99.3 1.8E-11 6E-16 112.5 11.1 87 456-543 99-185 (188)
33 2h57_A ADP-ribosylation factor 99.3 1.9E-11 6.6E-16 112.4 11.0 87 456-543 99-187 (190)
34 4ayc_A E3 ubiquitin-protein li 99.2 2.4E-12 8.2E-17 112.0 3.8 65 61-139 49-113 (138)
35 2ecv_A Tripartite motif-contai 99.2 3.8E-13 1.3E-17 106.8 -1.5 65 60-134 14-82 (85)
36 2ct2_A Tripartite motif protei 99.2 2.7E-12 9.3E-17 102.5 1.9 70 61-133 11-81 (88)
37 3o47_A ADP-ribosylation factor 99.2 6.7E-11 2.3E-15 118.7 11.6 88 456-544 241-328 (329)
38 2csy_A Zinc finger protein 183 99.2 1.2E-11 4E-16 97.1 4.5 59 62-133 12-70 (81)
39 3l11_A E3 ubiquitin-protein li 99.2 1E-11 3.5E-16 104.5 4.3 73 62-140 12-86 (115)
40 2ysl_A Tripartite motif-contai 99.2 1.9E-11 6.4E-16 93.9 5.2 54 61-119 16-70 (73)
41 3ihw_A Centg3; RAS, centaurin, 99.2 8.7E-11 3E-15 107.6 10.6 96 444-544 66-181 (184)
42 2djb_A Polycomb group ring fin 99.2 1.1E-11 3.8E-16 94.8 3.8 53 60-119 10-63 (72)
43 1bor_A Transcription factor PM 99.2 8.2E-12 2.8E-16 90.2 2.8 51 63-123 4-54 (56)
44 3t1o_A Gliding protein MGLA; G 99.2 1E-10 3.4E-15 107.8 10.8 78 459-544 115-193 (198)
45 3q72_A GTP-binding protein RAD 99.2 8.7E-11 3E-15 105.1 10.1 83 456-544 81-165 (166)
46 2f42_A STIP1 homology and U-bo 99.2 1.4E-11 4.8E-16 110.2 4.5 71 61-142 102-172 (179)
47 3q85_A GTP-binding protein REM 99.2 9.4E-11 3.2E-15 105.2 9.9 83 456-544 84-168 (169)
48 3lvq_E ARF-GAP with SH3 domain 99.2 9.5E-11 3.3E-15 124.7 11.4 88 456-544 398-485 (497)
49 1jm7_A BRCA1, breast cancer ty 99.2 5E-12 1.7E-16 106.0 1.0 72 60-141 16-88 (112)
50 2g3y_A GTP-binding protein GEM 99.1 1.1E-10 3.8E-15 109.3 9.9 83 456-544 120-204 (211)
51 2ecy_A TNF receptor-associated 99.1 2.3E-11 8E-16 91.2 3.9 53 61-119 11-63 (66)
52 2ckl_B Ubiquitin ligase protei 99.1 1.9E-11 6.5E-16 109.9 3.5 72 61-142 50-122 (165)
53 2hup_A RAS-related protein RAB 99.1 2E-10 6.9E-15 106.7 9.8 83 456-545 110-195 (201)
54 2ysj_A Tripartite motif-contai 99.1 4.3E-11 1.5E-15 88.9 4.1 48 60-112 15-63 (63)
55 2nzj_A GTP-binding protein REM 99.1 1.9E-10 6.7E-15 103.7 9.2 83 456-544 86-170 (175)
56 3cbq_A GTP-binding protein REM 99.1 2.6E-10 8.8E-15 105.5 10.0 83 456-544 105-189 (195)
57 1u8z_A RAS-related protein RAL 99.1 1.5E-10 5E-15 103.5 8.0 82 456-543 84-167 (168)
58 3htk_C E3 SUMO-protein ligase 99.1 4.7E-11 1.6E-15 111.8 4.4 71 62-142 178-251 (267)
59 3hct_A TNF receptor-associated 99.1 3E-11 1E-15 102.1 2.7 69 59-138 12-80 (118)
60 2a9k_A RAS-related protein RAL 99.1 2.3E-10 7.9E-15 104.3 8.9 84 456-545 98-183 (187)
61 2iwr_A Centaurin gamma 1; ANK 99.1 4.9E-10 1.7E-14 101.5 10.9 96 444-544 53-170 (178)
62 2bov_A RAla, RAS-related prote 99.1 3.1E-10 1.1E-14 105.4 9.6 83 456-544 94-178 (206)
63 2c2l_A CHIP, carboxy terminus 99.1 5.5E-11 1.9E-15 116.7 4.6 71 62-143 205-275 (281)
64 2ecj_A Tripartite motif-contai 99.1 6.8E-11 2.3E-15 86.2 3.7 47 61-112 11-58 (58)
65 2fu5_C RAS-related protein RAB 99.1 3.9E-10 1.3E-14 102.7 9.7 82 456-544 89-172 (183)
66 3kkq_A RAS-related protein M-R 99.1 3.2E-10 1.1E-14 103.2 9.0 82 456-543 98-182 (183)
67 2fn4_A P23, RAS-related protei 99.1 4E-10 1.4E-14 102.1 9.2 83 456-544 89-173 (181)
68 1c1y_A RAS-related protein RAP 99.0 3.8E-10 1.3E-14 100.9 8.6 82 456-542 83-166 (167)
69 3t5g_A GTP-binding protein RHE 99.0 3.1E-10 1.1E-14 103.2 8.0 83 456-544 86-170 (181)
70 2d8t_A Dactylidin, ring finger 99.0 1.2E-10 4E-15 88.8 3.7 49 63-118 13-61 (71)
71 2a5j_A RAS-related protein RAB 99.0 6E-10 2.1E-14 102.4 9.2 82 456-544 102-185 (191)
72 4dsu_A GTPase KRAS, isoform 2B 99.0 7.2E-10 2.5E-14 101.3 9.7 82 456-543 84-166 (189)
73 1g25_A CDK-activating kinase a 99.0 1.3E-10 4.3E-15 86.9 3.7 50 64-119 2-56 (65)
74 2atv_A RERG, RAS-like estrogen 99.0 3.9E-10 1.3E-14 104.2 7.8 85 456-546 107-194 (196)
75 2efe_B Small GTP-binding prote 99.0 6.2E-10 2.1E-14 101.0 8.9 82 456-544 93-176 (181)
76 1e4u_A Transcriptional repress 99.0 1.4E-10 4.8E-15 89.5 3.8 55 61-119 7-63 (78)
77 3ng2_A RNF4, snurf, ring finge 99.0 6.2E-11 2.1E-15 90.3 1.8 51 62-119 7-64 (71)
78 1rmd_A RAG1; V(D)J recombinati 99.0 6E-11 2.1E-15 99.9 1.8 68 61-138 19-86 (116)
79 1x3s_A RAS-related protein RAB 99.0 9.3E-10 3.2E-14 101.1 9.8 83 456-544 96-179 (195)
80 1cip_A Protein (guanine nucleo 99.0 3.4E-10 1.2E-14 114.0 7.1 85 460-544 239-345 (353)
81 3oes_A GTPase rhebl1; small GT 99.0 4.7E-10 1.6E-14 104.1 7.2 83 456-544 104-188 (201)
82 2fg5_A RAB-22B, RAS-related pr 99.0 6.2E-10 2.1E-14 102.4 7.9 83 456-545 104-188 (192)
83 3bc1_A RAS-related protein RAB 99.0 7.5E-10 2.6E-14 101.6 8.4 83 456-544 102-186 (195)
84 1z0f_A RAB14, member RAS oncog 99.0 1.1E-09 3.8E-14 99.0 9.3 81 456-543 96-178 (179)
85 2ea6_A Ring finger protein 4; 99.0 1.2E-10 4.2E-15 88.1 2.1 49 62-117 12-67 (69)
86 2yc2_C IFT27, small RAB-relate 99.0 1.1E-09 3.9E-14 101.7 9.1 82 456-543 105-192 (208)
87 2ce2_X GTPase HRAS; signaling 99.0 1.4E-09 4.8E-14 96.8 9.3 82 456-543 83-165 (166)
88 2o52_A RAS-related protein RAB 99.0 9.4E-10 3.2E-14 102.0 8.5 82 456-544 106-189 (200)
89 3knv_A TNF receptor-associated 99.0 1.2E-10 4.2E-15 101.1 2.2 53 60-118 26-78 (141)
90 2f7s_A C25KG, RAS-related prot 99.0 6.5E-10 2.2E-14 104.4 7.4 82 456-543 116-199 (217)
91 2bcg_Y Protein YP2, GTP-bindin 99.0 1.7E-09 5.8E-14 100.6 10.2 82 456-544 89-172 (206)
92 2ew1_A RAS-related protein RAB 99.0 8.3E-10 2.8E-14 102.6 7.9 82 456-544 107-190 (201)
93 1kao_A RAP2A; GTP-binding prot 99.0 5.1E-10 1.7E-14 99.8 6.2 82 456-543 83-166 (167)
94 3con_A GTPase NRAS; structural 99.0 1.5E-09 5.1E-14 99.5 9.5 84 456-545 101-185 (190)
95 1z08_A RAS-related protein RAB 99.0 8.4E-10 2.9E-14 99.0 7.7 81 456-543 87-169 (170)
96 2g6b_A RAS-related protein RAB 99.0 1.2E-09 4.2E-14 98.9 8.9 82 456-544 92-175 (180)
97 1r2q_A RAS-related protein RAB 99.0 7E-10 2.4E-14 99.3 7.1 80 456-542 87-168 (170)
98 2cjw_A GTP-binding protein GEM 99.0 1E-09 3.5E-14 101.1 8.3 82 456-543 89-172 (192)
99 2il1_A RAB12; G-protein, GDP, 99.0 1.4E-09 4.8E-14 100.1 9.2 83 456-544 107-191 (192)
100 3tkl_A RAS-related protein RAB 99.0 1.7E-09 5.8E-14 99.6 9.7 82 456-544 97-180 (196)
101 1wms_A RAB-9, RAB9, RAS-relate 99.0 1.7E-09 5.7E-14 97.8 9.4 83 456-543 88-174 (177)
102 2bme_A RAB4A, RAS-related prot 99.0 1.3E-09 4.5E-14 99.3 8.8 82 456-544 91-174 (186)
103 1g16_A RAS-related protein SEC 99.0 1.6E-09 5.4E-14 97.1 8.9 82 456-544 84-166 (170)
104 1iym_A EL5; ring-H2 finger, ub 99.0 4.8E-10 1.6E-14 80.6 4.4 52 62-117 2-54 (55)
105 2gf9_A RAS-related protein RAB 99.0 1.8E-09 6.2E-14 98.9 9.5 82 456-544 103-186 (189)
106 3dz8_A RAS-related protein RAB 99.0 8.7E-10 3E-14 101.3 7.2 84 456-546 104-189 (191)
107 3tw8_B RAS-related protein RAB 98.9 1.5E-09 5.3E-14 98.2 8.7 81 456-544 90-172 (181)
108 3c5c_A RAS-like protein 12; GD 98.9 7.1E-10 2.4E-14 101.7 6.2 82 456-543 100-186 (187)
109 1zbd_A Rabphilin-3A; G protein 98.9 2.1E-09 7.2E-14 99.6 9.3 82 456-544 89-172 (203)
110 1ky3_A GTP-binding protein YPT 98.9 2.3E-09 7.9E-14 97.1 9.3 84 456-544 90-179 (182)
111 1z2a_A RAS-related protein RAB 98.9 8.6E-10 2.9E-14 98.6 6.2 80 456-543 86-167 (168)
112 2oil_A CATX-8, RAS-related pro 98.9 1.9E-09 6.6E-14 99.0 8.7 82 456-544 106-189 (193)
113 2p5s_A RAS and EF-hand domain 98.9 1E-09 3.4E-14 101.7 6.7 81 456-543 109-197 (199)
114 2xeu_A Ring finger protein 4; 98.9 1.8E-10 6.2E-15 85.7 1.2 51 64-119 2-57 (64)
115 3reg_A RHO-like small GTPase; 98.9 1.3E-09 4.5E-14 100.4 7.3 83 456-546 103-191 (194)
116 1ek0_A Protein (GTP-binding pr 98.9 9.5E-10 3.2E-14 98.5 6.1 80 456-542 84-168 (170)
117 3clv_A RAB5 protein, putative; 98.9 4.2E-09 1.4E-13 97.3 10.6 80 456-544 125-205 (208)
118 3hcs_A TNF receptor-associated 98.9 2.7E-10 9.4E-15 102.8 2.4 69 59-138 12-80 (170)
119 3cpj_B GTP-binding protein YPT 98.9 2.2E-09 7.4E-14 101.4 8.6 81 456-543 94-176 (223)
120 2ect_A Ring finger protein 126 98.9 6.3E-10 2.2E-14 86.4 4.1 54 62-119 12-65 (78)
121 2atx_A Small GTP binding prote 98.9 2.6E-09 9E-14 98.2 8.9 79 456-542 98-192 (194)
122 2hxs_A RAB-26, RAS-related pro 98.9 1.4E-09 4.8E-14 98.4 6.8 83 456-544 88-174 (178)
123 3q3j_B RHO-related GTP-binding 98.9 1E-09 3.5E-14 103.0 6.0 81 456-544 107-204 (214)
124 1zcb_A G alpha I/13; GTP-bindi 98.9 1.3E-09 4.4E-14 110.3 7.1 84 460-543 247-353 (362)
125 2kiz_A E3 ubiquitin-protein li 98.9 7.1E-10 2.4E-14 83.9 3.9 54 62-119 11-64 (69)
126 4djt_A GTP-binding nuclear pro 98.9 3.7E-09 1.3E-13 99.2 9.7 82 456-544 93-176 (218)
127 1vg8_A RAS-related protein RAB 98.9 3.3E-09 1.1E-13 98.5 8.8 83 456-543 89-175 (207)
128 4ap4_A E3 ubiquitin ligase RNF 98.9 2.9E-10 9.8E-15 98.2 1.3 50 63-119 5-61 (133)
129 2dja_A Midline-2; tripartite m 98.9 3.7E-12 1.3E-16 100.6 -9.9 76 203-286 1-77 (84)
130 1z06_A RAS-related protein RAB 98.9 2.6E-09 8.9E-14 97.9 7.7 82 456-543 102-188 (189)
131 1z0j_A RAB-22, RAS-related pro 98.9 4.9E-09 1.7E-13 93.8 9.1 80 456-542 87-168 (170)
132 3gj0_A GTP-binding nuclear pro 98.9 1.2E-09 4.1E-14 102.9 5.2 81 456-544 96-176 (221)
133 2csv_A Tripartite motif protei 98.9 3.3E-10 1.1E-14 86.3 0.9 68 202-280 2-69 (72)
134 2ecm_A Ring finger and CHY zin 98.9 8.5E-10 2.9E-14 79.3 2.7 51 64-117 4-54 (55)
135 4ic3_A E3 ubiquitin-protein li 98.9 7.7E-10 2.6E-14 84.8 2.6 50 58-118 17-67 (74)
136 2q3h_A RAS homolog gene family 98.9 5.6E-09 1.9E-13 96.6 8.9 82 456-544 100-196 (201)
137 2j1l_A RHO-related GTP-binding 98.8 4.3E-09 1.5E-13 98.7 8.1 81 456-544 114-210 (214)
138 3cph_A RAS-related protein SEC 98.8 5.6E-09 1.9E-13 97.4 8.3 82 456-544 101-183 (213)
139 2l0b_A E3 ubiquitin-protein li 98.8 1.4E-09 4.9E-14 87.0 3.5 52 63-118 38-89 (91)
140 1chc_A Equine herpes virus-1 r 98.8 9E-10 3.1E-14 83.0 2.1 47 64-117 4-51 (68)
141 2y8e_A RAB-protein 6, GH09086P 98.8 3.4E-09 1.1E-13 95.8 6.1 80 456-542 95-176 (179)
142 1x4j_A Ring finger protein 38; 98.8 1.3E-09 4.6E-14 83.8 2.8 52 63-119 21-73 (75)
143 3c5h_A Glucocorticoid receptor 98.8 1.5E-09 5.2E-14 104.8 3.8 89 446-542 164-254 (255)
144 2gco_A H9, RHO-related GTP-bin 98.8 8.6E-09 2.9E-13 95.5 8.6 80 456-542 105-199 (201)
145 3l0i_B RAS-related protein RAB 98.8 9.1E-10 3.1E-14 102.0 1.7 81 456-543 114-196 (199)
146 1m7b_A RND3/RHOE small GTP-bin 98.8 3.7E-09 1.3E-13 96.4 5.7 81 456-543 87-183 (184)
147 2gf0_A GTP-binding protein DI- 98.8 4.8E-09 1.6E-13 96.7 6.1 82 456-543 88-171 (199)
148 2ecn_A Ring finger protein 141 98.8 1E-09 3.5E-14 83.3 1.1 51 61-119 11-61 (70)
149 4gzl_A RAS-related C3 botulinu 98.8 4.6E-09 1.6E-13 97.7 5.9 79 456-541 110-203 (204)
150 1mh1_A RAC1; GTP-binding, GTPa 98.8 7.2E-09 2.5E-13 94.2 7.0 80 456-543 85-180 (186)
151 1gwn_A RHO-related GTP-binding 98.8 5.1E-09 1.7E-13 97.5 6.0 82 456-544 108-205 (205)
152 2j0v_A RAC-like GTP-binding pr 98.8 4.3E-09 1.5E-13 98.3 5.5 80 456-543 89-180 (212)
153 2fv8_A H6, RHO-related GTP-bin 98.8 1E-08 3.5E-13 95.4 8.1 82 456-544 105-201 (207)
154 2xtz_A Guanine nucleotide-bind 98.8 2.4E-09 8E-14 107.9 3.7 86 459-544 228-346 (354)
155 2erx_A GTP-binding protein DI- 98.8 4.6E-09 1.6E-13 94.1 5.2 82 456-543 83-167 (172)
156 2ep4_A Ring finger protein 24; 98.8 1.9E-09 6.6E-14 82.7 2.0 53 62-118 12-64 (74)
157 3ohm_A Guanine nucleotide-bind 98.7 9.5E-09 3.3E-13 101.9 7.2 88 456-544 209-319 (327)
158 3bwd_D RAC-like GTP-binding pr 98.7 6.3E-09 2.2E-13 94.3 5.2 79 456-542 88-180 (182)
159 2fh5_B SR-beta, signal recogni 98.7 4.1E-08 1.4E-12 91.7 10.4 92 446-540 80-213 (214)
160 2ecg_A Baculoviral IAP repeat- 98.7 3E-09 1E-13 81.7 2.0 50 58-118 18-68 (75)
161 1azs_C GS-alpha; complex (lyas 98.7 1.1E-08 3.6E-13 104.4 4.5 85 460-544 263-386 (402)
162 1v87_A Deltex protein 2; ring- 98.6 1.4E-08 4.9E-13 84.9 4.1 51 64-119 24-95 (114)
163 2yho_A E3 ubiquitin-protein li 98.6 9.6E-09 3.3E-13 79.5 2.1 49 59-118 12-61 (79)
164 3th5_A RAS-related C3 botulinu 98.0 4.3E-09 1.5E-13 97.7 0.0 84 456-541 110-203 (204)
165 2d8u_A Ubiquitin ligase TRIM63 98.6 7.9E-10 2.7E-14 82.2 -4.5 55 217-279 6-60 (64)
166 2qu8_A Putative nucleolar GTP- 98.6 1.4E-07 4.7E-12 89.2 9.2 92 446-544 110-206 (228)
167 3pqc_A Probable GTP-binding pr 98.6 5.9E-08 2E-12 88.8 6.1 85 446-543 106-194 (195)
168 2wkq_A NPH1-1, RAS-related C3 98.6 6.5E-08 2.2E-12 96.8 6.6 80 456-543 235-330 (332)
169 1wim_A KIAA0161 protein; ring 98.6 1.2E-08 4E-13 82.2 0.9 69 64-141 4-83 (94)
170 2cxx_A Probable GTP-binding pr 98.5 3.2E-08 1.1E-12 90.3 3.9 87 456-544 88-185 (190)
171 2lkc_A Translation initiation 98.5 2.8E-07 9.6E-12 82.9 9.7 90 447-545 81-173 (178)
172 3llu_A RAS-related GTP-binding 98.5 1E-07 3.5E-12 87.8 6.8 91 446-541 97-195 (196)
173 2vje_A E3 ubiquitin-protein li 98.5 2.5E-08 8.7E-13 73.8 2.1 47 64-117 7-56 (64)
174 2ecl_A Ring-box protein 2; RNF 98.5 6.7E-08 2.3E-12 75.3 4.0 53 64-118 14-76 (81)
175 2vje_B MDM4 protein; proto-onc 98.5 4E-08 1.4E-12 72.5 2.2 47 64-117 6-55 (63)
176 2zej_A Dardarin, leucine-rich 98.5 1.8E-07 6.1E-12 85.2 6.6 85 456-544 88-179 (184)
177 2ea5_A Cell growth regulator w 98.5 7.9E-08 2.7E-12 71.9 3.2 45 63-118 13-58 (68)
178 4fid_A G protein alpha subunit 98.5 1.3E-07 4.3E-12 94.2 5.5 85 459-543 206-328 (340)
179 2y1n_A E3 ubiquitin-protein li 98.5 6.5E-08 2.2E-12 96.7 3.5 51 62-118 329-379 (389)
180 1svi_A GTP-binding protein YSX 98.4 2.6E-07 8.9E-12 84.7 7.1 84 446-542 107-194 (195)
181 2e87_A Hypothetical protein PH 98.4 1.1E-05 3.6E-10 81.7 19.2 86 447-543 249-336 (357)
182 2yvr_A Transcription intermedi 98.4 5.7E-08 1.9E-12 68.0 1.2 45 218-271 5-49 (50)
183 4ap4_A E3 ubiquitin ligase RNF 98.4 3.9E-08 1.3E-12 84.6 0.4 53 62-119 69-126 (133)
184 1u0l_A Probable GTPase ENGC; p 98.4 1.2E-07 4.1E-12 93.7 3.6 82 447-539 87-169 (301)
185 2gj8_A MNME, tRNA modification 98.4 7.1E-08 2.4E-12 87.0 1.7 82 447-544 86-167 (172)
186 2f9l_A RAB11B, member RAS onco 98.4 1.2E-06 4.2E-11 80.7 10.0 81 456-543 86-168 (199)
187 2did_A Tripartite motif protei 98.4 4.9E-08 1.7E-12 69.2 0.4 45 218-271 7-51 (53)
188 3dpl_R Ring-box protein 1; ubi 98.4 1.4E-07 4.8E-12 77.1 3.2 50 64-118 36-101 (106)
189 2wji_A Ferrous iron transport 98.4 1.8E-07 6E-12 83.6 3.6 62 467-541 98-163 (165)
190 3t6p_A Baculoviral IAP repeat- 98.3 1.5E-07 5E-12 93.8 2.6 50 58-118 288-338 (345)
191 3r7w_B Gtpase2, GTP-binding pr 98.3 6.4E-07 2.2E-11 88.4 7.0 91 447-542 75-173 (331)
192 2dyk_A GTP-binding protein; GT 98.3 2.2E-07 7.6E-12 82.1 3.1 79 446-541 81-160 (161)
193 3ddt_A E3 ubiquitin-protein li 98.3 1.3E-07 4.5E-12 65.5 0.8 43 218-268 5-47 (48)
194 2d8s_A Cellular modulator of i 98.3 3.4E-07 1.2E-11 70.7 3.2 55 63-120 13-72 (80)
195 1lnz_A SPO0B-associated GTP-bi 98.3 5.2E-07 1.8E-11 90.4 5.3 94 445-545 237-332 (342)
196 1fre_A Nuclear factor XNF7; zi 98.3 3E-07 1E-11 61.6 2.3 39 220-267 4-42 (42)
197 2yrg_A Tripartite motif-contai 98.2 1.3E-07 4.6E-12 68.4 -0.0 45 218-271 13-57 (59)
198 4dhe_A Probable GTP-binding pr 98.2 4.7E-07 1.6E-11 84.9 3.7 92 445-544 116-212 (223)
199 1oix_A RAS-related protein RAB 98.2 2.9E-06 9.8E-11 77.7 8.6 79 456-541 110-190 (191)
200 2wjg_A FEOB, ferrous iron tran 98.2 7.1E-07 2.4E-11 81.2 4.4 71 462-545 97-171 (188)
201 3dpu_A RAB family protein; roc 98.2 1.9E-06 6.6E-11 92.2 7.7 78 456-544 130-209 (535)
202 2bay_A PRE-mRNA splicing facto 98.2 3.5E-07 1.2E-11 66.6 1.3 48 65-119 3-51 (61)
203 3qq5_A Small GTP-binding prote 98.1 2.2E-06 7.4E-11 88.3 5.9 82 446-543 115-196 (423)
204 3gee_A MNME, tRNA modification 98.1 5.9E-06 2E-10 86.5 8.8 82 446-542 314-397 (476)
205 4a0k_B E3 ubiquitin-protein li 98.0 6.9E-07 2.4E-11 74.0 0.0 52 65-118 48-112 (117)
206 3b1v_A Ferrous iron uptake tra 98.0 4.9E-06 1.7E-10 80.7 5.5 71 457-543 90-164 (272)
207 2yv5_A YJEQ protein; hydrolase 98.0 3.8E-06 1.3E-10 82.8 4.3 80 447-539 82-165 (302)
208 3r7w_A Gtpase1, GTP-binding pr 98.0 5.2E-06 1.8E-10 82.1 5.2 80 456-541 89-179 (307)
209 2egm_A Tripartite motif-contai 97.9 1.5E-06 5.1E-11 62.4 0.7 41 218-267 17-57 (57)
210 2jun_A Midline-1; B-BOX, TRIM, 97.9 8.6E-06 3E-10 66.2 5.3 95 64-213 2-100 (101)
211 1xzp_A Probable tRNA modificat 97.9 1.3E-05 4.4E-10 84.0 7.9 55 481-542 350-404 (482)
212 3a1s_A Iron(II) transport prot 97.9 8.5E-06 2.9E-10 78.4 5.8 63 467-542 100-166 (258)
213 3iev_A GTP-binding protein ERA 97.9 4.5E-06 1.5E-10 82.6 3.8 87 447-543 95-182 (308)
214 4dcu_A GTP-binding protein ENG 97.9 5.5E-06 1.9E-10 86.7 4.3 63 480-543 305-369 (456)
215 3iby_A Ferrous iron transport 97.9 5.3E-06 1.8E-10 79.7 3.1 51 481-540 110-164 (256)
216 3i8s_A Ferrous iron transport 97.8 7.9E-06 2.7E-10 79.4 2.6 72 456-543 94-169 (274)
217 1nrj_B SR-beta, signal recogni 97.8 9.1E-07 3.1E-11 82.7 -4.1 54 445-500 83-139 (218)
218 1yrb_A ATP(GTP)binding protein 97.7 2.3E-05 7.7E-10 75.4 4.6 92 447-543 140-257 (262)
219 3sjy_A Translation initiation 97.7 2.6E-05 8.9E-10 80.2 5.3 81 456-542 107-191 (403)
220 1wf3_A GTP-binding protein; GT 97.6 1.9E-05 6.4E-10 77.8 3.2 84 446-542 88-172 (301)
221 2hjg_A GTP-binding protein ENG 97.6 3.3E-05 1.1E-09 80.3 5.2 88 447-543 260-349 (436)
222 3geh_A MNME, tRNA modification 97.6 6.8E-05 2.3E-09 78.1 7.2 55 482-544 331-385 (462)
223 3cb4_D GTP-binding protein LEP 97.6 8.3E-05 2.8E-09 79.8 7.9 57 480-542 122-181 (599)
224 2hf9_A Probable hydrogenase ni 97.6 1.8E-05 6.2E-10 74.2 2.4 58 482-543 165-224 (226)
225 3vk6_A E3 ubiquitin-protein li 97.6 2.8E-05 9.7E-10 60.9 2.9 46 67-117 3-48 (101)
226 2ywe_A GTP-binding protein LEP 97.6 0.0001 3.5E-09 79.0 8.2 57 480-542 124-183 (600)
227 2qtf_A Protein HFLX, GTP-bindi 97.6 0.00022 7.6E-09 71.9 10.1 92 447-544 260-355 (364)
228 1s0u_A EIF-2-gamma, translatio 97.6 8.7E-05 3E-09 76.4 7.1 58 482-542 136-197 (408)
229 2ct0_A Non-SMC element 1 homol 97.5 7.2E-05 2.5E-09 56.3 4.4 52 64-119 14-65 (74)
230 3h2y_A GTPase family protein; 97.5 4.7E-05 1.6E-09 77.1 4.2 84 447-541 72-158 (368)
231 3k53_A Ferrous iron transport 97.5 0.00012 4.1E-09 70.8 7.0 68 465-544 96-167 (271)
232 3izy_P Translation initiation 97.5 9.3E-05 3.2E-09 78.2 6.6 87 446-542 77-167 (537)
233 1g7s_A Translation initiation 97.5 0.00019 6.6E-09 77.0 9.1 90 445-542 94-217 (594)
234 2wsm_A Hydrogenase expression/ 97.5 3E-05 1E-09 72.3 1.8 59 481-543 154-214 (221)
235 1udx_A The GTP-binding protein 97.5 6.9E-05 2.4E-09 76.8 4.4 79 461-545 248-327 (416)
236 2ffw_A Midline-1; B-BOX, ring 97.4 6.2E-05 2.1E-09 57.6 2.5 44 168-211 30-77 (78)
237 1mky_A Probable GTP-binding pr 97.3 9.7E-05 3.3E-09 76.8 3.8 57 481-544 110-167 (439)
238 1zo1_I IF2, translation initia 97.3 0.00015 5E-09 76.1 4.8 85 447-540 77-164 (501)
239 1wb1_A Translation elongation 97.3 0.00012 3.9E-09 77.0 4.1 87 445-542 97-188 (482)
240 1kk1_A EIF2gamma; initiation o 97.3 0.00022 7.6E-09 73.4 6.1 58 482-542 138-199 (410)
241 2hjg_A GTP-binding protein ENG 97.3 0.0001 3.4E-09 76.6 3.3 82 446-543 84-165 (436)
242 3ec1_A YQEH GTPase; atnos1, at 97.2 0.0001 3.5E-09 74.7 2.4 62 480-542 97-161 (369)
243 1mky_A Probable GTP-binding pr 97.2 0.00023 7.8E-09 74.0 5.0 63 480-543 291-355 (439)
244 1ega_A Protein (GTP-binding pr 97.2 0.0003 1E-08 69.1 5.6 86 444-542 88-174 (301)
245 1vyx_A ORF K3, K3RING; zinc-bi 97.2 0.00014 4.9E-09 52.4 2.4 51 63-118 4-59 (60)
246 2qag_A Septin-2, protein NEDD5 97.1 0.0001 3.6E-09 74.4 1.6 60 480-546 173-236 (361)
247 3tr5_A RF-3, peptide chain rel 97.1 0.00095 3.2E-08 70.7 8.8 26 517-542 251-276 (528)
248 2aka_B Dynamin-1; fusion prote 97.1 0.00023 8E-09 69.6 3.5 59 480-541 191-251 (299)
249 3p32_A Probable GTPase RV1496/ 97.0 0.00014 4.8E-09 73.3 0.8 62 481-543 217-284 (355)
250 2xtp_A GTPase IMAP family memb 97.0 0.00049 1.7E-08 65.9 4.5 90 446-545 107-210 (260)
251 4dcu_A GTP-binding protein ENG 97.0 0.00042 1.4E-08 72.3 4.1 82 446-543 104-185 (456)
252 3j2k_7 ERF3, eukaryotic polype 97.0 0.00088 3E-08 69.5 6.5 55 481-535 154-217 (439)
253 2elf_A Protein translation elo 96.9 0.0015 5.2E-08 66.0 7.4 72 463-542 97-179 (370)
254 1jny_A EF-1-alpha, elongation 96.8 9.9E-05 3.4E-09 76.6 -1.8 52 483-535 146-205 (435)
255 1puj_A YLQF, conserved hypothe 96.8 0.00038 1.3E-08 67.6 2.0 57 480-542 49-105 (282)
256 2ged_A SR-beta, signal recogni 96.8 0.002 6.7E-08 58.2 6.5 61 445-507 119-182 (193)
257 3t5d_A Septin-7; GTP-binding p 96.6 0.00018 6.2E-09 69.7 -1.9 55 481-541 144-202 (274)
258 2c78_A Elongation factor TU-A; 96.6 0.0011 3.9E-08 67.9 3.7 86 447-541 101-210 (405)
259 1d2e_A Elongation factor TU (E 96.5 0.00081 2.8E-08 68.8 2.5 62 480-542 117-194 (397)
260 3k1l_B Fancl; UBC, ring, RWD, 96.5 0.00045 1.5E-08 67.0 0.3 56 63-119 306-374 (381)
261 2qnr_A Septin-2, protein NEDD5 96.5 0.0003 1E-08 69.0 -0.9 58 481-545 155-216 (301)
262 1zun_B Sulfate adenylate trans 96.5 0.0018 6.1E-08 67.0 4.6 51 483-534 159-215 (434)
263 2p67_A LAO/AO transport system 96.4 0.0014 4.7E-08 65.6 3.3 62 481-542 194-260 (341)
264 3p26_A Elongation factor 1 alp 96.4 0.0006 2.1E-08 71.7 0.5 50 482-532 172-227 (483)
265 3avx_A Elongation factor TS, e 96.3 0.0029 1E-07 71.8 5.3 87 446-541 384-484 (1289)
266 3ghg_A Fibrinogen alpha chain; 96.3 0.26 9.1E-06 49.9 18.4 136 268-411 52-193 (562)
267 1pui_A ENGB, probable GTP-bind 96.2 0.0039 1.3E-07 57.1 5.1 60 480-543 136-199 (210)
268 1r5b_A Eukaryotic peptide chai 96.1 0.00091 3.1E-08 69.9 -0.2 55 480-534 179-243 (467)
269 2dy1_A Elongation factor G; tr 96.0 0.0071 2.4E-07 66.0 6.1 26 517-542 248-273 (665)
270 1f60_A Elongation factor EEF1A 95.9 0.00084 2.9E-08 70.0 -1.7 52 481-533 144-202 (458)
271 2www_A Methylmalonic aciduria 95.8 0.0057 2E-07 61.2 4.2 62 481-542 212-278 (349)
272 2j69_A Bacterial dynamin-like 95.8 0.07 2.4E-06 58.4 13.1 84 456-543 209-325 (695)
273 3izq_1 HBS1P, elongation facto 95.5 0.0015 5E-08 70.6 -1.4 51 482-533 306-362 (611)
274 3lxw_A GTPase IMAP family memb 95.4 0.015 5.1E-07 55.0 5.5 96 447-546 108-211 (247)
275 3mca_A HBS1, elongation factor 95.4 0.0043 1.5E-07 66.7 1.8 50 481-531 314-371 (592)
276 3cnl_A YLQF, putative uncharac 95.3 0.0032 1.1E-07 60.3 0.1 52 481-539 46-97 (262)
277 2x2e_A Dynamin-1; nitration, h 95.1 0.005 1.7E-07 61.8 0.9 58 480-540 196-255 (353)
278 2h5e_A Peptide chain release f 95.0 0.0087 3E-07 63.3 2.6 52 480-535 133-187 (529)
279 1dar_A EF-G, elongation factor 94.9 0.069 2.3E-06 58.4 9.4 26 517-542 256-281 (691)
280 1deq_A Fibrinogen (alpha chain 94.9 0.74 2.5E-05 44.9 15.2 111 270-388 57-167 (390)
281 2rcn_A Probable GTPase ENGC; Y 94.7 0.011 3.7E-07 59.0 2.2 55 480-537 159-213 (358)
282 1t9h_A YLOQ, probable GTPase E 94.2 0.0034 1.2E-07 61.5 -2.8 52 480-537 116-171 (307)
283 3lxx_A GTPase IMAP family memb 94.0 0.033 1.1E-06 52.2 3.7 59 482-544 146-215 (239)
284 3nw0_A Non-structural maintena 93.8 0.063 2.1E-06 50.2 5.3 51 64-119 179-230 (238)
285 2qag_C Septin-7; cell cycle, c 93.7 0.0099 3.4E-07 60.8 -0.5 63 468-541 159-225 (418)
286 3ghg_A Fibrinogen alpha chain; 93.6 0.7 2.4E-05 46.9 12.4 9 247-255 42-51 (562)
287 1m1j_A Fibrinogen alpha subuni 93.6 1.9 6.7E-05 42.9 15.3 135 269-411 54-194 (491)
288 1jwy_B Dynamin A GTPase domain 93.2 0.083 2.9E-06 51.6 5.3 61 480-543 197-262 (315)
289 3t34_A Dynamin-related protein 93.2 0.031 1.1E-06 56.0 2.2 57 480-541 202-259 (360)
290 1m1j_B Fibrinogen beta chain; 93.2 5.6 0.00019 40.5 18.6 107 269-385 89-198 (464)
291 2xex_A Elongation factor G; GT 92.7 0.37 1.3E-05 52.6 10.0 26 517-542 254-279 (693)
292 3vqt_A RF-3, peptide chain rel 92.5 0.23 8E-06 52.6 7.8 27 516-542 268-294 (548)
293 2rdo_7 EF-G, elongation factor 92.3 0.32 1.1E-05 53.2 8.8 26 517-542 262-287 (704)
294 3m62_A Ubiquitin conjugation f 92.2 0.12 4.3E-06 57.2 5.3 72 60-143 886-958 (968)
295 3ghg_B Fibrinogen beta chain; 91.8 2.6 8.8E-05 42.5 13.8 111 267-387 82-195 (461)
296 2d8v_A Zinc finger FYVE domain 91.7 0.08 2.7E-06 37.7 2.0 45 170-215 10-55 (67)
297 2qm8_A GTPase/ATPase; G protei 91.7 0.16 5.4E-06 50.3 5.0 61 482-542 194-260 (337)
298 3zvr_A Dynamin-1; hydrolase, D 91.3 0.093 3.2E-06 57.5 3.0 59 480-540 216-275 (772)
299 1wxq_A GTP-binding protein; st 89.1 0.015 5.2E-07 59.2 -5.1 48 482-535 215-262 (397)
300 1m1j_C Fibrinogen gamma chain; 88.1 10 0.00035 38.0 14.8 111 267-386 25-136 (409)
301 2yvr_A Transcription intermedi 88.0 0.23 8E-06 33.7 2.0 42 168-214 6-47 (50)
302 3ghg_C Fibrinogen gamma chain; 86.5 4.1 0.00014 40.7 10.6 112 267-387 25-137 (411)
303 1weo_A Cellulose synthase, cat 85.0 0.98 3.4E-05 34.3 4.1 52 64-118 15-70 (93)
304 2ko5_A Ring finger protein Z; 83.8 0.69 2.4E-05 35.5 2.8 48 63-118 26-73 (99)
305 3j25_A Tetracycline resistance 82.0 0.65 2.2E-05 50.2 3.0 25 517-541 213-237 (638)
306 2d8u_A Ubiquitin ligase TRIM63 79.9 0.81 2.8E-05 32.8 2.0 42 169-215 9-51 (64)
307 3i2d_A E3 SUMO-protein ligase 77.5 1.4 4.7E-05 43.5 3.3 65 65-139 249-316 (371)
308 4fo9_A E3 SUMO-protein ligase 75.7 1.9 6.5E-05 42.3 3.8 64 65-138 215-281 (360)
309 3s84_A Apolipoprotein A-IV; fo 75.2 55 0.0019 30.7 14.5 31 319-349 67-97 (273)
310 1nfn_A Apolipoprotein E3; lipi 75.1 15 0.00051 32.7 9.3 25 319-343 129-153 (191)
311 2cs3_A Protein C14ORF4, MY039 74.7 1.7 5.7E-05 32.2 2.3 45 63-112 13-64 (93)
312 3r2p_A Apolipoprotein A-I; amp 73.1 48 0.0016 29.1 12.8 31 319-349 112-142 (185)
313 2dfs_A Myosin-5A; myosin-V, in 72.9 62 0.0021 37.0 15.8 23 360-382 1021-1043(1080)
314 3ddt_A E3 ubiquitin-protein li 72.4 1.9 6.4E-05 28.8 2.0 39 170-213 8-47 (48)
315 3vkg_A Dynein heavy chain, cyt 72.3 67 0.0023 41.1 16.9 14 186-199 1766-1779(3245)
316 2dfs_A Myosin-5A; myosin-V, in 71.5 47 0.0016 37.9 14.4 22 355-376 1023-1044(1080)
317 1weu_A Inhibitor of growth fam 70.8 7.1 0.00024 30.1 5.2 49 63-117 34-87 (91)
318 2did_A Tripartite motif protei 70.7 2 7E-05 29.3 2.0 40 170-215 10-50 (53)
319 3nis_A E3 ubiquitin-protein li 70.7 2.4 8.1E-05 32.1 2.4 34 229-266 19-52 (82)
320 3vem_A Helicase protein MOM1; 70.6 39 0.0013 26.9 11.2 46 320-365 55-100 (115)
321 2dby_A GTP-binding protein; GD 70.3 0.86 2.9E-05 45.5 -0.1 49 480-534 200-253 (368)
322 4fn5_A EF-G 1, elongation fact 69.9 9.2 0.00031 41.7 8.0 26 517-542 265-290 (709)
323 3ny3_A E3 ubiquitin-protein li 69.8 1.6 5.6E-05 32.4 1.3 34 229-266 15-48 (75)
324 1f5n_A Interferon-induced guan 67.3 78 0.0027 33.4 14.1 9 94-102 223-231 (592)
325 2dja_A Midline-2; tripartite m 66.3 2.7 9.3E-05 31.8 2.0 41 170-215 20-61 (84)
326 2v71_A Nuclear distribution pr 65.9 70 0.0024 28.1 17.6 18 365-382 119-136 (189)
327 1m1j_B Fibrinogen beta chain; 65.9 1.2E+02 0.0041 30.8 16.2 12 225-236 72-83 (464)
328 3def_A T7I23.11 protein; chlor 64.9 10 0.00035 35.4 6.3 20 482-501 152-173 (262)
329 1jal_A YCHF protein; nucleotid 62.6 6.4 0.00022 39.0 4.5 42 479-526 197-240 (363)
330 3k66_A Beta-amyloid-like prote 60.1 1E+02 0.0035 28.0 13.1 41 319-359 57-97 (239)
331 1z60_A TFIIH basal transcripti 59.7 9.3 0.00032 26.8 3.5 41 66-113 16-59 (59)
332 1h65_A Chloroplast outer envel 59.1 12 0.00041 35.1 5.6 14 482-495 155-168 (270)
333 2l7b_A Apolipoprotein E, APO-E 58.4 37 0.0013 32.6 8.8 45 319-363 137-181 (307)
334 2ct7_A Ring finger protein 31; 57.1 3.7 0.00013 31.3 1.3 36 65-100 25-61 (86)
335 3oja_A Leucine-rich immune mol 56.7 1.7E+02 0.0059 29.6 18.5 24 283-306 370-393 (487)
336 3oja_A Leucine-rich immune mol 56.4 88 0.003 31.9 12.2 14 288-301 368-381 (487)
337 3t7l_A Zinc finger FYVE domain 55.8 5.2 0.00018 30.8 1.9 37 64-101 19-55 (90)
338 1x79_B RAB GTPase binding effe 55.7 77 0.0026 25.3 12.5 9 332-340 48-56 (112)
339 2a01_A Apolipoprotein A-I; fou 55.6 1.2E+02 0.0043 27.7 15.2 78 267-350 97-175 (243)
340 3r2p_A Apolipoprotein A-I; amp 55.5 61 0.0021 28.4 9.3 17 272-288 81-97 (185)
341 4fla_A Regulation of nuclear P 55.5 95 0.0032 26.3 12.2 23 363-385 122-144 (152)
342 2eqb_B RAB guanine nucleotide 55.4 70 0.0024 24.7 13.9 31 319-349 44-74 (97)
343 3ghg_C Fibrinogen gamma chain; 55.1 96 0.0033 30.9 11.3 28 275-302 26-53 (411)
344 1nfn_A Apolipoprotein E3; lipi 54.5 41 0.0014 29.8 7.9 27 319-345 85-111 (191)
345 4a9a_A Ribosome-interacting GT 53.0 16 0.00053 36.4 5.4 51 480-541 248-298 (376)
346 1gs9_A Apolipoprotein E, APOE4 53.0 77 0.0026 27.2 9.2 18 319-336 129-146 (165)
347 4abm_A Charged multivesicular 52.7 68 0.0023 23.8 9.1 9 367-375 64-72 (79)
348 2jne_A Hypothetical protein YF 51.9 3.2 0.00011 32.1 0.1 41 66-118 33-73 (101)
349 1wen_A Inhibitor of growth fam 51.6 16 0.00056 26.6 4.0 49 63-117 14-67 (71)
350 3onj_A T-snare VTI1; helix, HA 51.1 83 0.0028 24.3 10.4 24 323-346 35-58 (97)
351 1f62_A Transcription factor WS 51.0 13 0.00043 25.0 3.1 45 67-115 2-50 (51)
352 2lri_C Autoimmune regulator; Z 51.0 22 0.00074 25.5 4.4 46 64-116 11-60 (66)
353 2ysm_A Myeloid/lymphoid or mix 50.7 15 0.0005 29.4 4.0 46 64-113 6-55 (111)
354 3ol1_A Vimentin; structural ge 49.7 1E+02 0.0034 24.8 14.9 42 267-308 14-55 (119)
355 1joc_A EEA1, early endosomal a 49.7 6.8 0.00023 32.3 1.8 36 64-100 68-103 (125)
356 1gs9_A Apolipoprotein E, APOE4 49.3 80 0.0027 27.1 8.7 55 292-352 64-118 (165)
357 1z2q_A LM5-1; membrane protein 49.1 7.8 0.00027 29.4 1.9 36 64-100 20-55 (84)
358 2yrg_A Tripartite motif-contai 48.2 9.5 0.00032 26.6 2.1 40 170-215 16-56 (59)
359 2v71_A Nuclear distribution pr 48.2 1.4E+02 0.0049 26.2 17.7 27 359-385 99-125 (189)
360 3mjh_B Early endosome antigen 47.9 2.2 7.6E-05 26.3 -1.1 13 64-76 4-16 (34)
361 3vkg_A Dynein heavy chain, cyt 47.1 3E+02 0.01 35.4 16.3 7 259-265 1886-1892(3245)
362 2yw8_A RUN and FYVE domain-con 47.0 7.9 0.00027 29.2 1.6 36 64-100 18-53 (82)
363 2a01_A Apolipoprotein A-I; fou 47.0 94 0.0032 28.5 9.4 21 319-339 111-131 (243)
364 3l4q_C Phosphatidylinositol 3- 46.4 1.4E+02 0.0049 25.7 15.2 109 271-394 12-142 (170)
365 2qpt_A EH domain-containing pr 46.1 5.3 0.00018 42.1 0.8 44 446-496 190-233 (550)
366 1vfy_A Phosphatidylinositol-3- 45.5 9.8 0.00034 27.9 1.9 34 66-100 12-45 (73)
367 1y02_A CARP2, FYVE-ring finger 45.0 6.4 0.00022 32.1 0.9 52 63-117 17-68 (120)
368 1n0u_A EF-2, elongation factor 44.5 13 0.00046 41.3 3.7 15 480-494 149-163 (842)
369 2k16_A Transcription initiatio 44.5 15 0.00053 26.9 2.9 50 64-117 17-70 (75)
370 2yqq_A Zinc finger HIT domain- 43.8 6.8 0.00023 27.2 0.7 32 168-200 12-44 (56)
371 1x4u_A Zinc finger, FYVE domai 43.5 9.6 0.00033 28.8 1.6 36 64-100 13-48 (84)
372 6rxn_A Rubredoxin; electron tr 42.7 18 0.00063 23.8 2.7 35 65-115 4-39 (46)
373 3ghg_B Fibrinogen beta chain; 42.1 2.8E+02 0.0097 27.9 13.1 12 225-236 67-78 (461)
374 1wfk_A Zinc finger, FYVE domai 41.6 9.1 0.00031 29.3 1.3 36 64-100 8-43 (88)
375 2lv9_A Histone-lysine N-methyl 40.7 15 0.0005 28.8 2.3 47 64-115 27-76 (98)
376 2gmg_A Hypothetical protein PF 40.6 15 0.0005 29.0 2.3 31 83-120 68-98 (105)
377 2fzt_A Hypothetical protein TM 39.4 1.1E+02 0.0037 22.2 9.0 53 329-381 18-77 (79)
378 2zet_C Melanophilin; complex, 38.8 15 0.0005 31.4 2.3 49 64-115 67-117 (153)
379 4ayb_P DNA-directed RNA polyme 38.4 9.6 0.00033 25.1 0.8 28 86-117 7-34 (48)
380 1ik9_A DNA repair protein XRCC 38.0 2.2E+02 0.0076 25.5 15.4 46 327-372 158-203 (213)
381 1f5n_A Interferon-induced guan 37.5 3.8E+02 0.013 28.1 14.3 31 323-353 520-550 (592)
382 2j69_A Bacterial dynamin-like 37.3 1.7E+02 0.0059 31.4 11.1 58 319-376 612-669 (695)
383 1t3j_A Mitofusin 1; coiled coi 36.7 1.4E+02 0.0049 22.9 8.1 30 321-350 28-57 (96)
384 1we9_A PHD finger family prote 36.2 13 0.00044 26.3 1.3 51 63-116 4-59 (64)
385 1gmj_A ATPase inhibitor; coile 36.1 1.4E+02 0.0046 22.4 8.3 17 363-379 59-75 (84)
386 1x4s_A Protein FON, zinc finge 35.8 6.8 0.00023 27.4 -0.3 32 169-200 12-47 (59)
387 2qyw_A Vesicle transport throu 35.7 1.5E+02 0.0053 23.0 9.3 24 269-292 15-38 (102)
388 2fc7_A ZZZ3 protein; structure 35.5 14 0.00049 27.8 1.5 31 168-198 21-58 (82)
389 1wd2_A Ariadne-1 protein homol 35.3 10 0.00035 26.6 0.6 39 64-102 5-46 (60)
390 2l43_A N-teminal domain from h 34.8 16 0.00056 27.8 1.7 55 62-118 22-78 (88)
391 1zbd_B Rabphilin-3A; G protein 34.8 18 0.00061 30.1 2.1 49 64-114 54-106 (134)
392 2l5u_A Chromodomain-helicase-D 34.8 33 0.0011 24.0 3.2 46 63-115 9-58 (61)
393 3hhm_B NISH2 P85alpha; PI3KCA, 34.6 2.9E+02 0.0098 27.1 11.2 31 357-387 214-244 (373)
394 2j37_W Signal recognition part 34.0 17 0.0006 37.6 2.3 59 482-540 240-310 (504)
395 2yt5_A Metal-response element- 33.9 10 0.00036 27.0 0.5 52 63-116 4-62 (66)
396 3fx7_A Putative uncharacterize 33.6 1.6E+02 0.0055 22.6 10.7 57 277-343 10-66 (94)
397 1dvp_A HRS, hepatocyte growth 33.1 13 0.00044 33.9 1.0 36 64-100 160-195 (220)
398 3zyq_A Hepatocyte growth facto 32.7 13 0.00045 34.0 1.0 35 65-100 164-198 (226)
399 2jmo_A Parkin; IBR, E3 ligase, 32.4 8.7 0.0003 28.8 -0.2 37 65-101 25-69 (80)
400 2jrp_A Putative cytoplasmic pr 32.3 9.2 0.00032 28.7 -0.1 40 66-117 3-42 (81)
401 3ci9_A Heat shock factor-bindi 32.2 1.1E+02 0.0038 20.3 5.3 31 345-375 14-44 (48)
402 3pp5_A BRK1, protein brick1; t 32.2 1.5E+02 0.005 21.6 9.6 52 327-378 17-68 (73)
403 2ku3_A Bromodomain-containing 32.1 22 0.00077 25.8 2.0 51 63-115 14-66 (71)
404 1mm2_A MI2-beta; PHD, zinc fin 30.7 26 0.00089 24.5 2.1 46 63-115 7-56 (61)
405 2l82_A Designed protein OR32; 29.6 80 0.0027 24.7 4.8 67 467-547 89-155 (162)
406 3c6w_A P28ING5, inhibitor of g 29.4 13 0.00046 25.9 0.4 46 63-114 7-57 (59)
407 3mpx_A FYVE, rhogef and PH dom 28.9 12 0.0004 38.0 0.0 52 64-116 374-430 (434)
408 1ci6_A Transcription factor AT 28.5 1.5E+02 0.0052 20.7 8.0 41 268-308 11-51 (63)
409 1jnm_A Proto-oncogene C-JUN; B 28.3 1.1E+02 0.0039 21.2 5.2 40 269-308 11-50 (62)
410 2csv_A Tripartite motif protei 28.2 18 0.00063 26.2 1.0 38 170-213 20-57 (72)
411 4gzn_C ZFP-57, zinc finger pro 27.9 33 0.0011 23.8 2.2 38 65-118 4-44 (60)
412 3nmd_A CGMP dependent protein 27.7 1.8E+02 0.006 21.1 6.4 10 259-268 7-16 (72)
413 1wgn_A UBAP1, ubiquitin associ 27.5 28 0.00094 24.5 1.6 17 525-541 42-58 (63)
414 2epr_A POZ-, at HOOK-, and zin 27.2 55 0.0019 20.6 3.2 14 63-76 10-23 (48)
415 2lem_A Apolipoprotein A-I; lip 27.1 34 0.0012 30.9 2.8 17 320-336 100-116 (216)
416 1t3j_A Mitofusin 1; coiled coi 26.4 2.2E+02 0.0076 21.9 8.2 27 274-300 41-67 (96)
417 2lv2_A Insulinoma-associated p 26.4 35 0.0012 25.6 2.3 40 63-118 26-68 (85)
418 3uk3_C Zinc finger protein 217 26.3 34 0.0012 22.5 2.1 38 65-118 4-44 (57)
419 1tot_A CREB-binding protein; z 26.2 13 0.00044 25.3 -0.2 31 169-199 7-39 (52)
420 2epq_A POZ-, at HOOK-, and zin 26.2 53 0.0018 20.3 2.9 13 64-76 9-21 (45)
421 3lqh_A Histone-lysine N-methyl 26.2 17 0.00059 32.0 0.6 52 66-117 3-65 (183)
422 2olm_A Nucleoporin-like protei 25.7 60 0.002 27.1 3.8 34 170-203 27-60 (140)
423 2vnf_A ING 4, P29ING4, inhibit 25.3 17 0.00058 25.5 0.3 46 63-114 8-58 (60)
424 3na7_A HP0958; flagellar bioge 25.2 3.9E+02 0.013 24.4 19.5 10 398-407 176-185 (256)
425 3lay_A Zinc resistance-associa 24.9 3.1E+02 0.011 23.6 8.4 7 276-282 74-80 (175)
426 2e5r_A Dystrobrevin alpha; ZZ 24.5 45 0.0015 23.5 2.4 31 169-199 12-46 (63)
427 2cos_A Serine/threonine protei 24.2 30 0.001 23.5 1.3 19 522-540 30-48 (54)
428 2jny_A Uncharacterized BCR; st 24.0 22 0.00074 25.6 0.7 36 62-120 7-42 (67)
429 2lri_C Autoimmune regulator; Z 24.0 56 0.0019 23.3 2.9 28 169-196 13-40 (66)
430 2jr6_A UPF0434 protein NMA0874 24.0 20 0.00067 25.9 0.4 37 62-121 5-41 (68)
431 2g6q_A Inhibitor of growth pro 23.8 19 0.00067 25.4 0.4 46 63-114 9-59 (62)
432 2l81_A Enhancer of filamentati 23.6 1.9E+02 0.0065 25.0 6.6 6 266-271 18-23 (176)
433 3ol1_A Vimentin; structural ge 23.5 2.8E+02 0.0097 22.1 15.1 35 274-308 14-48 (119)
434 3o0z_A RHO-associated protein 23.2 3.5E+02 0.012 23.1 17.3 24 321-344 61-84 (168)
435 1x6e_A Zinc finger protein 24; 22.9 43 0.0015 23.5 2.2 42 64-118 13-54 (72)
436 1vd4_A Transcription initiatio 22.5 40 0.0014 23.0 1.9 40 64-119 13-52 (62)
437 2xqn_T Testin, TESS; metal-bin 22.4 54 0.0018 26.4 3.0 47 64-118 29-75 (126)
438 2xjy_A Rhombotin-2; oncoprotei 22.3 48 0.0017 26.9 2.7 51 64-118 28-78 (131)
439 2ytn_A Zinc finger protein 347 22.3 79 0.0027 19.4 3.3 13 64-76 11-23 (46)
440 2fiy_A Protein FDHE homolog; F 22.2 23 0.0008 34.0 0.7 46 63-115 180-231 (309)
441 2js4_A UPF0434 protein BB2007; 22.0 23 0.00079 25.7 0.5 36 62-120 5-40 (70)
442 2el4_A Zinc finger protein 268 21.8 72 0.0025 19.6 3.0 13 64-76 11-23 (46)
443 2eml_A Zinc finger protein 28 21.6 68 0.0023 19.8 2.8 13 64-76 11-23 (46)
444 1j1j_A Translin; testis/brain 21.6 4.6E+02 0.016 23.8 10.7 26 258-283 6-31 (240)
445 2ve7_C Kinetochore protein NUF 21.4 2.3E+02 0.0079 26.0 7.4 83 325-409 120-202 (250)
446 2em5_A ZFP-95, zinc finger pro 21.4 70 0.0024 19.8 2.8 13 64-76 11-23 (46)
447 2owa_A Arfgap-like finger doma 21.4 69 0.0024 26.6 3.3 32 170-201 38-69 (138)
448 2lce_A B-cell lymphoma 6 prote 21.2 55 0.0019 23.0 2.5 40 63-118 15-57 (74)
449 2o35_A Hypothetical protein DU 21.2 25 0.00087 27.2 0.6 12 91-102 42-53 (105)
450 3fyb_A Protein of unknown func 21.1 26 0.00087 27.1 0.6 12 91-102 41-52 (104)
451 2ytg_A ZFP-95, zinc finger pro 21.1 67 0.0023 19.8 2.7 13 64-76 11-23 (46)
452 2eoe_A Zinc finger protein 347 21.1 76 0.0026 19.5 3.0 13 64-76 11-23 (46)
453 4fla_A Regulation of nuclear P 20.8 3.8E+02 0.013 22.5 11.9 18 354-371 127-144 (152)
454 2cup_A Skeletal muscle LIM-pro 20.7 56 0.0019 25.0 2.6 47 64-118 32-78 (101)
455 1fxk_C Protein (prefoldin); ar 20.7 2.8E+02 0.0097 22.3 7.2 35 266-304 85-119 (133)
456 2adr_A ADR1; transcription reg 20.5 51 0.0017 21.9 2.1 37 66-118 3-42 (60)
457 1wil_A KIAA1045 protein; ring 20.5 75 0.0026 23.8 2.9 47 63-115 13-76 (89)
458 2ysp_A Zinc finger protein 224 20.5 77 0.0026 19.5 2.9 13 64-76 11-23 (46)
459 1wev_A Riken cDNA 1110020M19; 20.4 20 0.00068 27.3 -0.2 52 64-117 15-74 (88)
460 2l7b_A Apolipoprotein E, APO-E 20.4 5.5E+02 0.019 24.3 10.9 11 398-408 177-187 (307)
461 2epz_A Zinc finger protein 28 20.3 80 0.0027 19.4 2.9 13 64-76 11-23 (46)
462 2wt7_A Proto-oncogene protein 20.3 2.3E+02 0.0077 19.7 7.3 39 270-308 13-51 (63)
463 1ni3_A YCHF GTPase, YCHF GTP-b 20.3 97 0.0033 30.8 4.8 59 479-541 222-305 (392)
464 2eop_A Zinc finger protein 268 20.2 80 0.0027 19.4 2.9 13 64-76 11-23 (46)
465 2em7_A Zinc finger protein 224 20.2 87 0.003 19.2 3.1 13 64-76 11-23 (46)
466 2hf1_A Tetraacyldisaccharide-1 20.1 20 0.0007 25.8 -0.2 37 62-121 5-41 (68)
467 2en1_A Zinc finger protein 224 20.1 87 0.003 19.2 3.1 13 64-76 11-23 (46)
468 2eov_A Zinc finger protein 484 20.0 74 0.0025 19.6 2.7 13 64-76 11-23 (46)
469 3iv1_A Tumor susceptibility ge 20.0 2.7E+02 0.0092 20.5 11.3 38 268-305 6-43 (78)
No 1
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.59 E-value=7.6e-16 Score=140.10 Aligned_cols=93 Identities=15% Similarity=0.208 Sum_probs=76.7
Q ss_pred EEEEeeCCCCCccchhhHHHHHHHH---HHHhhccC-cCCCeEEEEecC-CCCCCCCCHHHHHHhcCCCcccCCCcEEEE
Q psy15732 446 RVVTLGLDSADSADKERLPEALAEL---TKLIAEKE-LKDAALLLLANK-QDIPGCETVESITEAFDLYKLCCGRSWHIQ 520 (550)
Q Consensus 446 ~~~~~~~d~~D~~d~~~~~~~~~~l---~~~~~~~~-~~~~pili~~NK-~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~ 520 (550)
..++|++|. +|.++++ ++.+| +.++.+.. +.++|+||+||| +|++++++..+|.+.|+|+.+ ++.|.++
T Consensus 127 dglIfVVDS---sD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l--~R~W~Iq 200 (227)
T 3l82_B 127 DGFIYVANA---EAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLL--NHPWLVQ 200 (227)
T ss_dssp SEEEEEEEC---BTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGG--CSCEEEE
T ss_pred CEEEEEecc---ccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCC--CCCEEEE
Confidence 345555554 5566665 88888 55565543 588999999999 589999999999999999988 5999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHh
Q psy15732 521 ACNAQSGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 521 ~~SA~~g~gi~e~f~~l~~~~~~~ 544 (550)
.|||+||+||.|+|+||++.+.++
T Consensus 201 ~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 201 DTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp EEETTTCTTHHHHHHHHTTTTTTC
T ss_pred EeECCCCcCHHHHHHHHHHHHHhh
Confidence 999999999999999999887654
No 2
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.51 E-value=8.8e-15 Score=139.71 Aligned_cols=86 Identities=16% Similarity=0.266 Sum_probs=72.8
Q ss_pred CccchhhHHHHHHHHH---HHhhccC-cCCCeEEEEecC-CCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCH
Q psy15732 456 DSADKERLPEALAELT---KLIAEKE-LKDAALLLLANK-QDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGL 530 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~---~~~~~~~-~~~~pili~~NK-~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi 530 (550)
|++|.+|++ ++.+|+ .++.+.. +.++|+||+||| +|++++++..||.+.|+|+.+ ++.|.++.|||+||+||
T Consensus 219 DSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l--~r~W~Iq~csA~tGeGL 295 (312)
T 3l2o_B 219 NAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLL--NHPWLVQDTEAETLTGF 295 (312)
T ss_dssp BCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGG--CSCEEEEEEETTTCTTH
T ss_pred cCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccC--CCcEEEEecccCCCcCH
Confidence 566677765 777665 5665543 578999999996 799999999999999999988 59999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy15732 531 HEGLDWLSRQLIAA 544 (550)
Q Consensus 531 ~e~f~~l~~~~~~~ 544 (550)
.|+|+||++.+.++
T Consensus 296 ~EGldWL~~~l~~k 309 (312)
T 3l2o_B 296 LNGIEWILEEVESK 309 (312)
T ss_dssp HHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988554
No 3
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.50 E-value=1.6e-14 Score=116.64 Aligned_cols=74 Identities=24% Similarity=0.463 Sum_probs=63.7
Q ss_pred ccCCcceeccccccccccCCCCcEEec-CCCcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHHHHH
Q psy15732 61 ILELALECRVCEDIFLTQGDKVPRLLH-CGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELIEKI 139 (550)
Q Consensus 61 ~~~~~l~C~iC~~~~~~~~~~~P~~l~-CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~~~ 139 (550)
.+.+.+.|+||++.|. + |++++ |||+||..||..|+.......||.||..+.... .+.+|+.+.++++.+
T Consensus 9 ~~~~~~~C~IC~~~~~---~--p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~----~~~~n~~l~~~i~~~ 79 (92)
T 3ztg_A 9 PIPDELLCLICKDIMT---D--AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD----ALIANKFLRQAVNNF 79 (92)
T ss_dssp CCCTTTEETTTTEECS---S--CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTT----SCEECHHHHHHHHHH
T ss_pred cCCcCCCCCCCChhhc---C--ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCcc----ccCcCHHHHHHHHHH
Confidence 3578899999999999 9 99999 999999999999987545578999999974332 589999999999998
Q ss_pred Hhcc
Q psy15732 140 QTND 143 (550)
Q Consensus 140 ~~~~ 143 (550)
....
T Consensus 80 ~~~~ 83 (92)
T 3ztg_A 80 KNET 83 (92)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7753
No 4
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.46 E-value=2.1e-14 Score=121.41 Aligned_cols=72 Identities=28% Similarity=0.437 Sum_probs=62.9
Q ss_pred hhhccCCcceeccccccccccCCCCcEEe-cCCCcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHH
Q psy15732 58 RILILELALECRVCEDIFLTQGDKVPRLL-HCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELI 136 (550)
Q Consensus 58 ~~~~~~~~l~C~iC~~~~~~~~~~~P~~l-~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~ 136 (550)
.+..+.+.+.|+||++.|. + |+++ +|||+||..|+..|+. ..||.||..+... .+..|+.+.+++
T Consensus 15 ~~~~l~~~~~C~IC~~~~~---~--pv~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~~~~-----~~~~n~~l~~l~ 80 (117)
T 1jm7_B 15 ALDRLEKLLRCSRCTNILR---E--PVCLGGCEHIFCSNCVSDCIG----TGCPVCYTPAWIQ-----DLKINRQLDSMI 80 (117)
T ss_dssp HHHHHHHTTSCSSSCSCCS---S--CBCCCSSSCCBCTTTGGGGTT----TBCSSSCCBCSCS-----SCCCCHHHHHHH
T ss_pred HHHhchhCCCCCCCChHhh---C--ccEeCCCCCHHHHHHHHHHhc----CCCcCCCCcCccc-----cccccHHHHHHH
Confidence 3455678999999999999 9 9999 9999999999999976 6799999998654 589999999999
Q ss_pred HHHHhcc
Q psy15732 137 EKIQTND 143 (550)
Q Consensus 137 ~~~~~~~ 143 (550)
+.+....
T Consensus 81 ~~~~~~~ 87 (117)
T 1jm7_B 81 QLCSKLR 87 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 5
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=99.41 E-value=8.3e-14 Score=114.45 Aligned_cols=92 Identities=24% Similarity=0.566 Sum_probs=75.5
Q ss_pred cCCCCcc---ccccccccccchhhhhHhhhhh-cCCCcccCCcccccC-CCCCCCCCCCCCCcccccceeecccccCCcc
Q psy15732 169 IKCDEDE---SHIAVLYCTVCASHLCEQCASD-SHATRTLQKHRRIPL-SEKPREKPFCSSHPTNIAEFICLEEHCQTSA 243 (550)
Q Consensus 169 ~~C~~~~---~~~A~~~C~~C~~~lC~~C~~~-h~~~~~~~~H~~~~~-~~~~~~~~~C~~H~~~~l~~fC~~~~C~~~~ 243 (550)
+.|+.|. ...|+.+|.+|..+||..|... |.+.+.++.|.++.+ .+.+.....|+.|+.+++++||.+|+
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~----- 78 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDD----- 78 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTT-----
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCC-----
Confidence 4577665 4789999999999999999998 555678899998854 33344567899997669999999854
Q ss_pred ccccccccccccccccCCCCcccHH
Q psy15732 244 QYPPLMCFICKDYGRHKTHKHALVE 268 (550)
Q Consensus 244 ~c~~~iC~~C~~~~~H~~H~~~~l~ 268 (550)
.+||..|...+.|++|.+.+++
T Consensus 79 ---~~iC~~C~~~~~H~~H~~~~l~ 100 (101)
T 2jun_A 79 ---QLICALCKLVGRHRDHQVAALS 100 (101)
T ss_dssp ---EEECHHHHHHTTTSSSCBCCCC
T ss_pred ---CccchhcCCCCCcCCCCeecCC
Confidence 9999999987899999998764
No 6
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.40 E-value=1.4e-12 Score=119.30 Aligned_cols=88 Identities=38% Similarity=0.715 Sum_probs=74.8
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|+++.++|.++..|+..++......++|++||+||+|+.+....+++.+.+++..+. .+.+.+++|||++|.||+++|+
T Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l~~ 170 (181)
T 1fzq_A 92 DSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIR-DRVWQIQSCSALTGEGVQDGMN 170 (181)
T ss_dssp ETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCC-SSCEEEEECCTTTCTTHHHHHH
T ss_pred ECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhcc-CCceEEEEccCCCCCCHHHHHH
Confidence 778889999999999998876556789999999999998888888898888865553 6789999999999999999999
Q ss_pred HHHHHHHHh
Q psy15732 536 WLSRQLIAA 544 (550)
Q Consensus 536 ~l~~~~~~~ 544 (550)
||++.+.++
T Consensus 171 ~l~~~~~~~ 179 (181)
T 1fzq_A 171 WVCKNVNAK 179 (181)
T ss_dssp HHHHTC---
T ss_pred HHHHHHHhc
Confidence 999877543
No 7
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.40 E-value=1.3e-13 Score=107.62 Aligned_cols=70 Identities=20% Similarity=0.332 Sum_probs=61.8
Q ss_pred cCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHHHHHHh
Q psy15732 62 LELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELIEKIQT 141 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~~~~~ 141 (550)
+.+.+.|+||++.|. + |++++|||+||+.|+..|+.. +...||.||..+... .+.+|..+.++++.+..
T Consensus 5 ~~~~~~C~IC~~~~~---~--Pv~~~CgH~fc~~Ci~~~~~~-~~~~CP~C~~~~~~~-----~l~~n~~l~~~i~~~~~ 73 (78)
T 1t1h_A 5 FPEYFRCPISLELMK---D--PVIVSTGQTYERSSIQKWLDA-GHKTCPKSQETLLHA-----GLTPNYVLKSLIALWCE 73 (78)
T ss_dssp CSSSSSCTTTSCCCS---S--EEEETTTEEEEHHHHHHHHTT-TCCBCTTTCCBCSSC-----CCEECTTTHHHHHHHHH
T ss_pred CcccCCCCCcccccc---C--CEEcCCCCeecHHHHHHHHHH-CcCCCCCCcCCCChh-----hCccCHHHHHHHHHHHH
Confidence 567899999999999 9 999999999999999999974 367899999998765 48889999999998876
Q ss_pred c
Q psy15732 142 N 142 (550)
Q Consensus 142 ~ 142 (550)
.
T Consensus 74 ~ 74 (78)
T 1t1h_A 74 S 74 (78)
T ss_dssp H
T ss_pred H
Confidence 4
No 8
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.38 E-value=2e-13 Score=107.86 Aligned_cols=70 Identities=21% Similarity=0.190 Sum_probs=62.3
Q ss_pred ccCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHHHHHH
Q psy15732 61 ILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELIEKIQ 140 (550)
Q Consensus 61 ~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~~~~ 140 (550)
.+.+++.||||+++|. + |++++|||+||+.||..||.. ...||.|+..+... .|.+|..+.++++.+.
T Consensus 10 ~~p~~~~CpI~~~~m~---d--PV~~~cGhtf~r~~I~~~l~~--~~~cP~~~~~l~~~-----~l~pn~~L~~~i~~~~ 77 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMT---D--PVRLPSGTVMDRSIILRHLLN--SPTDPFNRQMLTES-----MLEPVPELKEQIQAWM 77 (85)
T ss_dssp TCCTTTBCTTTCSBCS---S--EEECTTSCEEEHHHHHHHHHH--CSBCTTTCCBCCGG-----GCEECHHHHHHHHHHH
T ss_pred cCchheECcccCchhc---C--CeECCCCCEECHHHHHHHHhc--CCCCCCCcCCCChH-----hcchHHHHHHHHHHHH
Confidence 4568899999999999 9 999999999999999999983 56899999998764 5899999999999886
Q ss_pred hc
Q psy15732 141 TN 142 (550)
Q Consensus 141 ~~ 142 (550)
..
T Consensus 78 ~~ 79 (85)
T 2kr4_A 78 RE 79 (85)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 9
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.36 E-value=3.3e-12 Score=114.31 Aligned_cols=88 Identities=52% Similarity=0.789 Sum_probs=74.5
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|++++++|..+..|+..++......++|++||+||+|+.+....+++.+.+++..+. ...+.+++|||++|.||+++|+
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~ 154 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-HRNWYIQATCATSGDGLYEGLD 154 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCS-SCCEEEEECBTTTTBTHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCccccc-CccEEEEEcccCCCcCHHHHHH
Confidence 677888999999999998876666789999999999998887888898888865553 6788999999999999999999
Q ss_pred HHHHHHHHh
Q psy15732 536 WLSRQLIAA 544 (550)
Q Consensus 536 ~l~~~~~~~ 544 (550)
||.+.+.++
T Consensus 155 ~l~~~i~~~ 163 (164)
T 1r8s_A 155 WLSNQLRNQ 163 (164)
T ss_dssp HHHHHC---
T ss_pred HHHHHHhhc
Confidence 999987654
No 10
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.36 E-value=3e-13 Score=115.59 Aligned_cols=73 Identities=23% Similarity=0.501 Sum_probs=62.6
Q ss_pred hhccCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHHHH
Q psy15732 59 ILILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELIEK 138 (550)
Q Consensus 59 ~~~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~~ 138 (550)
...+.+.+.|+||++.|. + |++++|||+||..|+..|+.. ....||.||..+.... .++.|..+.++++.
T Consensus 46 ~~~~~~~~~C~IC~~~~~---~--p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~----~~~~n~~l~~~i~~ 115 (124)
T 3fl2_A 46 LSKVEETFQCICCQELVF---R--PITTVCQHNVCKDCLDRSFRA-QVFSCPACRYDLGRSY----AMQVNQPLQTVLNQ 115 (124)
T ss_dssp HHHHHHHTBCTTTSSBCS---S--EEECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCTTC----CCCCCHHHHHHHHH
T ss_pred HHhCccCCCCCcCChHHc---C--cEEeeCCCcccHHHHHHHHhH-CcCCCCCCCccCCCCC----CCCCCHHHHHHHHH
Confidence 345677899999999999 9 999999999999999999873 4568999999997633 58999999999988
Q ss_pred HHh
Q psy15732 139 IQT 141 (550)
Q Consensus 139 ~~~ 141 (550)
+-.
T Consensus 116 ~~p 118 (124)
T 3fl2_A 116 LFP 118 (124)
T ss_dssp HST
T ss_pred Hcc
Confidence 753
No 11
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.36 E-value=5.5e-13 Score=108.56 Aligned_cols=71 Identities=21% Similarity=0.205 Sum_probs=63.2
Q ss_pred ccCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHHHHHH
Q psy15732 61 ILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELIEKIQ 140 (550)
Q Consensus 61 ~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~~~~ 140 (550)
.+.+++.||||+++|. + |++++|||+||+.||..||. ....||.|+.++... .|.+|..|.++++.+.
T Consensus 25 ~~p~~~~CpI~~~~m~---d--PV~~~cGhtf~r~~I~~~l~--~~~~cP~~~~~l~~~-----~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMT---D--PVRLPSGTIMDRSIILRHLL--NSPTDPFNRQTLTES-----MLEPVPELKEQIQAWM 92 (100)
T ss_dssp SCSTTTBCTTTCSBCS---S--EEEETTTEEEEHHHHHHHTT--SCSBCSSSCCBCCTT-----SSEECHHHHHHHHHHH
T ss_pred cCcHhhCCcCccCccc---C--CeECCCCCEEchHHHHHHHH--cCCCCCCCCCCCChh-----hceECHHHHHHHHHHH
Confidence 3567899999999999 9 99999999999999999998 357899999998765 5899999999999987
Q ss_pred hcc
Q psy15732 141 TND 143 (550)
Q Consensus 141 ~~~ 143 (550)
...
T Consensus 93 ~~~ 95 (100)
T 2kre_A 93 REK 95 (100)
T ss_dssp HTT
T ss_pred HHh
Confidence 654
No 12
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.34 E-value=1.2e-12 Score=106.11 Aligned_cols=71 Identities=21% Similarity=0.238 Sum_probs=63.1
Q ss_pred ccCCcceeccccccccccCCCCcEEecCC-CcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHHHHH
Q psy15732 61 ILELALECRVCEDIFLTQGDKVPRLLHCG-HTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELIEKI 139 (550)
Q Consensus 61 ~~~~~l~C~iC~~~~~~~~~~~P~~l~Cg-H~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~~~ 139 (550)
.+.+++.||||+++|. + |++++|| |+||+.||..||.. ...||.|+.++... .|.+|..|.++++.+
T Consensus 18 ~~p~~~~CpI~~~~m~---d--PV~~~cG~htf~r~cI~~~l~~--~~~cP~~~~~l~~~-----~L~pn~~Lk~~I~~~ 85 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMC---D--PVVLPSSRVTVDRSTIARHLLS--DQTDPFNRSPLTMD-----QIRPNTELKEKIQRW 85 (98)
T ss_dssp SCCTTTBCTTTCSBCS---S--EEECTTTCCEEEHHHHHHHTTT--SCBCTTTCSBCCTT-----TSEECHHHHHHHHHH
T ss_pred cCcHhcCCcCcccccc---C--CeECCCCCeEECHHHHHHHHHh--CCCCCCCCCCCChh-----hceEcHHHHHHHHHH
Confidence 3567899999999999 9 9999999 99999999999984 56899999998765 589999999999998
Q ss_pred Hhcc
Q psy15732 140 QTND 143 (550)
Q Consensus 140 ~~~~ 143 (550)
....
T Consensus 86 ~~~~ 89 (98)
T 1wgm_A 86 LAER 89 (98)
T ss_dssp HHHS
T ss_pred HHHc
Confidence 7654
No 13
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.34 E-value=7.7e-14 Score=109.18 Aligned_cols=66 Identities=23% Similarity=0.517 Sum_probs=54.7
Q ss_pred hccCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccC-----CCccCCCCCCCcccCCCCCccCccccHHHHH
Q psy15732 60 LILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIK-----DDTITCPFDRQPTPVGYSGVWGLKKNFALLE 134 (550)
Q Consensus 60 ~~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~-----~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~ 134 (550)
..+.+.+.|+||++.|. + |++++|||+||..|+..|+.. .....||.||..+... .+.+|+.+.+
T Consensus 7 ~~~~~~~~C~IC~~~~~---~--p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~-----~l~~n~~l~~ 76 (79)
T 2egp_A 7 GNVQEEVTCPICLELLT---E--PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE-----HLQANQHLAN 76 (79)
T ss_dssp CCCCCCCEETTTTEECS---S--CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS-----GGGTCSSSCC
T ss_pred hhcccCCCCcCCCcccC---C--eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh-----hCCcCHHHHH
Confidence 34678899999999999 9 999999999999999999874 2367899999998765 4777776544
Q ss_pred H
Q psy15732 135 L 135 (550)
Q Consensus 135 ~ 135 (550)
+
T Consensus 77 l 77 (79)
T 2egp_A 77 I 77 (79)
T ss_dssp C
T ss_pred h
Confidence 3
No 14
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.33 E-value=6.3e-13 Score=108.73 Aligned_cols=73 Identities=22% Similarity=0.437 Sum_probs=63.6
Q ss_pred hhccCCcceeccccccccccCCCCcEEe-cCCCcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHHH
Q psy15732 59 ILILELALECRVCEDIFLTQGDKVPRLL-HCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELIE 137 (550)
Q Consensus 59 ~~~~~~~l~C~iC~~~~~~~~~~~P~~l-~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~ 137 (550)
...+.+.+.|+||++.|. + |+++ +|||+||..|+..|+. ....||.||..+... .+.+|+.+.++++
T Consensus 16 ~~~~~~~~~C~IC~~~~~---~--p~~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~~-----~l~~n~~l~~~i~ 83 (99)
T 2y43_A 16 MKTIDDLLRCGICFEYFN---I--AMIIPQCSHNYCSLCIRKFLS--YKTQCPTCCVTVTEP-----DLKNNRILDELVK 83 (99)
T ss_dssp GHHHHHHTBCTTTCSBCS---S--EEECTTTCCEEEHHHHHHHHT--TCCBCTTTCCBCCGG-----GCEECHHHHHHHH
T ss_pred HHhCCCCCCcccCChhhC---C--cCEECCCCCHhhHHHHHHHHH--CCCCCCCCCCcCChh-----hCCcCHHHHHHHH
Confidence 344567899999999999 9 9998 9999999999999988 446899999998764 4899999999999
Q ss_pred HHHhcc
Q psy15732 138 KIQTND 143 (550)
Q Consensus 138 ~~~~~~ 143 (550)
.++...
T Consensus 84 ~~~~~~ 89 (99)
T 2y43_A 84 SLNFAR 89 (99)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
No 15
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.32 E-value=6.9e-12 Score=115.83 Aligned_cols=87 Identities=47% Similarity=0.787 Sum_probs=75.9
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|++++++|+.+..|+..++......++|++||+||+|+.+....+++.+.+++..+. ...+.+++|||++|.||+++|+
T Consensus 105 D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~-~~~~~~~~~SA~~g~gi~~l~~ 183 (192)
T 2b6h_A 105 DSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLR-SRTWYVQATCATQGTGLYDGLD 183 (192)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCS-SCCEEEEECBTTTTBTHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCccccc-CCceEEEECcCCCcCCHHHHHH
Confidence 678889999999999999876666789999999999998888888999988865553 6789999999999999999999
Q ss_pred HHHHHHHH
Q psy15732 536 WLSRQLIA 543 (550)
Q Consensus 536 ~l~~~~~~ 543 (550)
||++.+.+
T Consensus 184 ~l~~~i~~ 191 (192)
T 2b6h_A 184 WLSHELSK 191 (192)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHhc
Confidence 99988753
No 16
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.32 E-value=2e-12 Score=121.70 Aligned_cols=92 Identities=13% Similarity=0.168 Sum_probs=76.1
Q ss_pred eEEEEEeeCCCC---------------------CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHH
Q psy15732 444 EMRVVTLGLDSA---------------------DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVE 500 (550)
Q Consensus 444 ~~~~~~~~~d~~---------------------D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~ 500 (550)
.+.+.+|++.|+ |.+++++|+++..|+..+.... ..++|++|||||+||.. .++.+
T Consensus 61 ~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~ 139 (216)
T 4dkx_A 61 TIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIE 139 (216)
T ss_dssp EEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHH
T ss_pred EEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHH
Confidence 567788888876 8999999999999999886553 36799999999999954 56777
Q ss_pred HHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 501 SITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 501 ~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
+..+... ..++.|++|||++|.||+++|++|++.+.
T Consensus 140 e~~~~a~------~~~~~~~e~SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 140 EGERKAK------ELNVMFIETSAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp HHHHHHH------HHTCEEEEEBTTTTBSHHHHHHHHHHHC-
T ss_pred HHhhHHH------HhCCeeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 7776555 33468999999999999999999998774
No 17
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.32 E-value=9.5e-12 Score=111.98 Aligned_cols=88 Identities=34% Similarity=0.602 Sum_probs=75.8
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|+++.++|.++..|+..++......++|++||+||+|+.+....+++.+.+++..+. ...+.++++||++|.||+++|+
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~ 161 (171)
T 1upt_A 83 DSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALK-DRKWQIFKTSATKGTGLDEAME 161 (171)
T ss_dssp ETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCT-TSCEEEEECCTTTCTTHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhcc-CCceEEEECcCCCCcCHHHHHH
Confidence 667788899999999998877656789999999999998887888888888765553 6788999999999999999999
Q ss_pred HHHHHHHHh
Q psy15732 536 WLSRQLIAA 544 (550)
Q Consensus 536 ~l~~~~~~~ 544 (550)
||.+.+.++
T Consensus 162 ~l~~~i~~~ 170 (171)
T 1upt_A 162 WLVETLKSR 170 (171)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhhc
Confidence 999988654
No 18
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.32 E-value=1e-11 Score=113.30 Aligned_cols=88 Identities=45% Similarity=0.745 Sum_probs=76.0
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|+++.++|+++..|+..++......++|++||+||+|+.+....+++.+.+++..+. ...+.++++||++|.||+++|+
T Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~ 172 (183)
T 1moz_A 94 DSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELK-DRSWSIVASSAIKGEGITEGLD 172 (183)
T ss_dssp ETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCC-SSCEEEEEEBGGGTBTHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCccccc-CCceEEEEccCCCCcCHHHHHH
Confidence 456678899999999999876556789999999999998888889999988866553 6788999999999999999999
Q ss_pred HHHHHHHHh
Q psy15732 536 WLSRQLIAA 544 (550)
Q Consensus 536 ~l~~~~~~~ 544 (550)
||.+.+.++
T Consensus 173 ~l~~~~~~~ 181 (183)
T 1moz_A 173 WLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999988764
No 19
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.30 E-value=1.6e-11 Score=112.43 Aligned_cols=88 Identities=41% Similarity=0.755 Sum_probs=76.4
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|++++++|+++..|+..++......++|++||+||+|+......+++.+.+++..+. ...+.+++|||++|.||+++|+
T Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~ 172 (186)
T 1ksh_A 94 DSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIR-SHHWRIQGCSAVTGEDLLPGID 172 (186)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCC-SSCEEEEECCTTTCTTHHHHHH
T ss_pred ECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhcc-CCceEEEEeeCCCCCCHHHHHH
Confidence 778889999999999999877556789999999999998888888898888865543 6788999999999999999999
Q ss_pred HHHHHHHHh
Q psy15732 536 WLSRQLIAA 544 (550)
Q Consensus 536 ~l~~~~~~~ 544 (550)
||.+.+.++
T Consensus 173 ~l~~~i~~~ 181 (186)
T 1ksh_A 173 WLLDDISSR 181 (186)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhc
Confidence 999988654
No 20
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.30 E-value=7.7e-12 Score=116.12 Aligned_cols=86 Identities=33% Similarity=0.602 Sum_probs=72.2
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCc---------cc--CCCcEEEEEecc
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYK---------LC--CGRSWHIQACNA 524 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~---------~~--~~~~~~~~~~SA 524 (550)
|++++++|.++..|+.+++......++|++||+||+|+.+.++.+++.+.++... +. ..+.+.+++|||
T Consensus 101 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 180 (198)
T 1f6b_A 101 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180 (198)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEEC
Confidence 6788899999999999998765567899999999999988888999998887432 11 125789999999
Q ss_pred cCCCCHHHHHHHHHHHH
Q psy15732 525 QSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 525 ~~g~gi~e~f~~l~~~~ 541 (550)
++|+||+++|+||++.+
T Consensus 181 ~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 181 LKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTTBSHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999998643
No 21
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.30 E-value=3.3e-13 Score=110.50 Aligned_cols=75 Identities=23% Similarity=0.483 Sum_probs=64.1
Q ss_pred hhhccCCcceeccccccccccCCCCcEE-ecCCCcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHH
Q psy15732 58 RILILELALECRVCEDIFLTQGDKVPRL-LHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELI 136 (550)
Q Consensus 58 ~~~~~~~~l~C~iC~~~~~~~~~~~P~~-l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~ 136 (550)
....+.+.+.|+||++.|. + |++ ++|||+||..||..|+.... ..||.||..+... .+..|..+.+++
T Consensus 15 ~~~~l~~~~~C~IC~~~~~---~--p~~~~~CgH~FC~~Ci~~~~~~~~-~~CP~Cr~~~~~~-----~l~~~~~~~~i~ 83 (100)
T 3lrq_A 15 SVESIAEVFRCFICMEKLR---D--ARLCPHCSKLCCFSCIRRWLTEQR-AQCPHCRAPLQLR-----ELVNCRWAEEVT 83 (100)
T ss_dssp HHHHHHHHTBCTTTCSBCS---S--EEECTTTCCEEEHHHHHHHHHHTC-SBCTTTCCBCCGG-----GCEECTTHHHHH
T ss_pred ccccCCCCCCCccCCcccc---C--ccccCCCCChhhHHHHHHHHHHCc-CCCCCCCCcCCHH-----HhHhhHHHHHHH
Confidence 4456778999999999999 9 999 89999999999999988432 6899999998764 588899999998
Q ss_pred HHHHhcc
Q psy15732 137 EKIQTND 143 (550)
Q Consensus 137 ~~~~~~~ 143 (550)
+.+....
T Consensus 84 ~~~~~l~ 90 (100)
T 3lrq_A 84 QQLDTLQ 90 (100)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 8887764
No 22
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.30 E-value=1.8e-11 Score=112.45 Aligned_cols=89 Identities=38% Similarity=0.714 Sum_probs=77.0
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|++++++|.++..|+..++......++|++||+||+|+......+++.+.+++..+. .+.+.+++|||++|.||+++|+
T Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~ 176 (189)
T 2x77_A 98 DSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIM-NRTWTIVKSSSKTGDGLVEGMD 176 (189)
T ss_dssp ETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCC-SSCEEEEECCTTTCTTHHHHHH
T ss_pred eCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhcc-CCceEEEEccCCCccCHHHHHH
Confidence 667788999999999999877666789999999999998887888898888865553 6788999999999999999999
Q ss_pred HHHHHHHHhc
Q psy15732 536 WLSRQLIAAG 545 (550)
Q Consensus 536 ~l~~~~~~~~ 545 (550)
||.+.+.+.+
T Consensus 177 ~l~~~i~~~~ 186 (189)
T 2x77_A 177 WLVERLREQG 186 (189)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhcc
Confidence 9999987654
No 23
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.30 E-value=1.1e-11 Score=114.29 Aligned_cols=85 Identities=33% Similarity=0.511 Sum_probs=72.0
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCc------ccCCCcEEEEEecccCCCC
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYK------LCCGRSWHIQACNAQSGEG 529 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~------~~~~~~~~~~~~SA~~g~g 529 (550)
|+++.++|++...|+..++......++|++||+||+|+....+.+++.+.++... +.....+.+++|||++|.|
T Consensus 99 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 178 (190)
T 1m2o_B 99 DAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNG 178 (190)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBS
T ss_pred ECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCC
Confidence 7788899999999999998765557899999999999988888999999887533 1124678999999999999
Q ss_pred HHHHHHHHHHH
Q psy15732 530 LHEGLDWLSRQ 540 (550)
Q Consensus 530 i~e~f~~l~~~ 540 (550)
|+++|+||++.
T Consensus 179 i~~l~~~l~~~ 189 (190)
T 1m2o_B 179 YLEAFQWLSQY 189 (190)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 99999999864
No 24
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.30 E-value=1.5e-11 Score=112.74 Aligned_cols=87 Identities=44% Similarity=0.787 Sum_probs=75.0
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|+++.++|+++..|+..++......++|++||+||+|+.+..+.+++.+.+++..+. ...+.+++|||++|.||+++|+
T Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l~~ 170 (187)
T 1zj6_A 92 DSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIK-DHQWHIQACCALTGEGLCQGLE 170 (187)
T ss_dssp ETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCC-SSCEEEEECBTTTTBTHHHHHH
T ss_pred eCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhc-CCCcEEEEccCCCCcCHHHHHH
Confidence 677888999999999999876555789999999999998888888998888765443 5678999999999999999999
Q ss_pred HHHHHHHH
Q psy15732 536 WLSRQLIA 543 (550)
Q Consensus 536 ~l~~~~~~ 543 (550)
||++.+..
T Consensus 171 ~l~~~~~~ 178 (187)
T 1zj6_A 171 WMMSRLKI 178 (187)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHH
Confidence 99998744
No 25
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.29 E-value=1.2e-12 Score=115.11 Aligned_cols=72 Identities=26% Similarity=0.463 Sum_probs=62.7
Q ss_pred hccCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHHHHH
Q psy15732 60 LILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELIEKI 139 (550)
Q Consensus 60 ~~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~~~ 139 (550)
..+.+.+.|+||++.|. + |++++|||+||..|+..|+.. ..+.||.||..+.... .++.|+.+.++++.+
T Consensus 73 ~~l~~~~~C~IC~~~~~---~--pv~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~----~l~~n~~l~~lv~~~ 142 (150)
T 1z6u_A 73 KKLEQSFMCVCCQELVY---Q--PVTTECFHNVCKDCLQRSFKA-QVFSCPACRHDLGQNY----IMIPNEILQTLLDLF 142 (150)
T ss_dssp HHHHHHTBCTTTSSBCS---S--EEECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCTTC----CCCBCHHHHHHHHHH
T ss_pred HhCccCCEeecCChhhc---C--CEEcCCCCchhHHHHHHHHHh-CCCcCCCCCccCCCCC----CCCCCHHHHHHHHHH
Confidence 34567899999999999 9 999999999999999999874 4468999999998763 589999999999987
Q ss_pred Hh
Q psy15732 140 QT 141 (550)
Q Consensus 140 ~~ 141 (550)
..
T Consensus 143 ~p 144 (150)
T 1z6u_A 143 FP 144 (150)
T ss_dssp ST
T ss_pred hh
Confidence 64
No 26
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.29 E-value=1.2e-11 Score=112.98 Aligned_cols=84 Identities=44% Similarity=0.811 Sum_probs=72.4
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|+++.++|+++..|+..++......++|++||+||+||....+.+++.+.+++..+. ...+.+++|||++|.||+++|+
T Consensus 97 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l~~ 175 (181)
T 2h17_A 97 DSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIK-DHQWHIQACCALTGEGLCQGLE 175 (181)
T ss_dssp ETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCC-SSCEEEEECBTTTTBTHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCccccc-CCceEEEEccCCCCcCHHHHHH
Confidence 567778899999999998876545789999999999998888889999988865553 6788999999999999999999
Q ss_pred HHHHH
Q psy15732 536 WLSRQ 540 (550)
Q Consensus 536 ~l~~~ 540 (550)
||.+.
T Consensus 176 ~l~~~ 180 (181)
T 2h17_A 176 WMMSR 180 (181)
T ss_dssp HHHTC
T ss_pred HHHhh
Confidence 99864
No 27
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.29 E-value=6.8e-12 Score=116.14 Aligned_cols=89 Identities=30% Similarity=0.517 Sum_probs=75.8
Q ss_pred CccchhhHHHHHHHHHHHhhccCc-------CCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCC
Q psy15732 456 DSADKERLPEALAELTKLIAEKEL-------KDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGE 528 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~-------~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~ 528 (550)
|+++.++|.++..|+..++..... .++|++||+||+|+......+++.+.+++..+.....+.+++|||++|.
T Consensus 95 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 174 (199)
T 4bas_A 95 DSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGT 174 (199)
T ss_dssp ETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTB
T ss_pred ECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCcc
Confidence 677889999999999998766332 2799999999999988888899998888655423678999999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q psy15732 529 GLHEGLDWLSRQLIAA 544 (550)
Q Consensus 529 gi~e~f~~l~~~~~~~ 544 (550)
||+++|+||++.+...
T Consensus 175 gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 175 GVHEGFSWLQETASRQ 190 (199)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999988654
No 28
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.28 E-value=1.6e-12 Score=100.10 Aligned_cols=55 Identities=27% Similarity=0.555 Sum_probs=47.4
Q ss_pred ccCCcceeccccccccccCCCCcEEec-CCCcchhhhHhhcccCCCccCCCCCCCcccCCC
Q psy15732 61 ILELALECRVCEDIFLTQGDKVPRLLH-CGHTVCLACLLRLPIKDDTITCPFDRQPTPVGY 120 (550)
Q Consensus 61 ~~~~~l~C~iC~~~~~~~~~~~P~~l~-CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~ 120 (550)
.+.+.+.|+||++.|. + |++++ |||+||..||..|+.......||.||..+...+
T Consensus 11 ~~~~~~~C~IC~~~~~---~--p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 11 PIPDELLCLICKDIMT---D--AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CSCGGGSCSSSCCCCT---T--CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred cCCCCCCCcCCChHHh---C--CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 4567899999999999 9 99999 999999999999997544578999999865543
No 29
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.28 E-value=2.6e-12 Score=106.87 Aligned_cols=75 Identities=21% Similarity=0.483 Sum_probs=63.3
Q ss_pred hhccCCcceeccccccccccCCCCcEEe-cCCCcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHHH
Q psy15732 59 ILILELALECRVCEDIFLTQGDKVPRLL-HCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELIE 137 (550)
Q Consensus 59 ~~~~~~~l~C~iC~~~~~~~~~~~P~~l-~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~ 137 (550)
+..+.+.+.|+||++.|. + |+++ +|||+||..|+..|+.. ...||.||..+... ..+..+..|..+.++++
T Consensus 9 ~~~~~~~~~C~IC~~~~~---~--p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~-~~~~~l~~n~~l~~~i~ 80 (108)
T 2ckl_A 9 ITELNPHLMCVLCGGYFI---D--ATTIIECLHSFCKTCIVRYLET--SKYCPICDVQVHKT-RPLLNIRSDKTLQDIVY 80 (108)
T ss_dssp HHHHGGGTBCTTTSSBCS---S--EEEETTTCCEEEHHHHHHHHTS--CSBCTTTCCBSCSS-CGGGGEEECHHHHHHHH
T ss_pred hhccCCcCCCccCChHHh---C--cCEeCCCCChhhHHHHHHHHHh--CCcCcCCCcccccc-CcccccCcCHHHHHHHH
Confidence 345678999999999999 9 9998 99999999999999874 47899999998763 23345789999999998
Q ss_pred HHHh
Q psy15732 138 KIQT 141 (550)
Q Consensus 138 ~~~~ 141 (550)
.+..
T Consensus 81 ~~~~ 84 (108)
T 2ckl_A 81 KLVP 84 (108)
T ss_dssp HHST
T ss_pred HHhh
Confidence 8754
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.27 E-value=2.5e-13 Score=107.86 Aligned_cols=66 Identities=27% Similarity=0.634 Sum_probs=54.0
Q ss_pred hccCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccC----CCccCCCCCCCcccCCCCCccCccccHHHHHH
Q psy15732 60 LILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIK----DDTITCPFDRQPTPVGYSGVWGLKKNFALLEL 135 (550)
Q Consensus 60 ~~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~----~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~ 135 (550)
..+.+.+.|+||++.|. + |++++|||+||..|+..|+.. .....||.||..+... .+.+|+.+.++
T Consensus 14 ~~~~~~~~C~IC~~~~~---~--p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~-----~~~~n~~l~~~ 83 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLK---E--PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG-----NLKPNLHVANI 83 (85)
T ss_dssp CCCCTTTSCTTTCSCCS---S--CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT-----CCEECSCCCSS
T ss_pred HhCccCCCCcCCChhhC---c--ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH-----hCCcCHHHHHh
Confidence 34567899999999999 9 999999999999999999874 2378899999998765 36667655443
No 31
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=2.6e-12 Score=103.64 Aligned_cols=72 Identities=19% Similarity=0.281 Sum_probs=61.5
Q ss_pred cCCcceeccccccccccCCCCcEEec-CCCcchhhhHhhcccCC----CccCCCC--CCCc-ccCCCCCccCccccHHHH
Q psy15732 62 LELALECRVCEDIFLTQGDKVPRLLH-CGHTVCLACLLRLPIKD----DTITCPF--DRQP-TPVGYSGVWGLKKNFALL 133 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~~~P~~l~-CgH~fC~~Cl~~~~~~~----~~~~CP~--Cr~~-~~~~~~~~~~l~~n~~l~ 133 (550)
..+.+.||||+++|. + |++++ |||+||+.||..||... ..+.||. |+.. +... .|.+|..|.
T Consensus 4 ~~~~~~CPI~~~~~~---d--PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~-----~L~pn~~L~ 73 (94)
T 2yu4_A 4 GSSGFTCPITKEEMK---K--PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS-----DLIQDEALR 73 (94)
T ss_dssp CSSCCBCTTTCSBCS---S--EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGG-----GEEECHHHH
T ss_pred CCcEeECcCcCchhc---C--CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHh-----hCcCCHHHH
Confidence 457899999999999 9 99995 99999999999999742 3578999 9876 5544 589999999
Q ss_pred HHHHHHHhcc
Q psy15732 134 ELIEKIQTND 143 (550)
Q Consensus 134 ~~~~~~~~~~ 143 (550)
++++.+....
T Consensus 74 ~~I~~~~~~~ 83 (94)
T 2yu4_A 74 RAIENHNKKR 83 (94)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 32
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.27 E-value=1.8e-11 Score=112.53 Aligned_cols=87 Identities=24% Similarity=0.457 Sum_probs=74.2
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|+++.++|..+..|+..++......++|++||+||+|+......+++.+.+++..+. ...+.+++|||++|.||+++|+
T Consensus 99 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~SA~~g~gv~~l~~ 177 (188)
T 1zd9_A 99 DAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQ-DREICCYSISCKEKDNIDITLQ 177 (188)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCC-SSCEEEEECCTTTCTTHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhc-cCCeeEEEEECCCCCCHHHHHH
Confidence 778889999999999998876555789999999999998887888888888765543 5678999999999999999999
Q ss_pred HHHHHHHH
Q psy15732 536 WLSRQLIA 543 (550)
Q Consensus 536 ~l~~~~~~ 543 (550)
||.+.+..
T Consensus 178 ~l~~~~~~ 185 (188)
T 1zd9_A 178 WLIQHSKS 185 (188)
T ss_dssp HHHHTCC-
T ss_pred HHHHHHHh
Confidence 99987754
No 33
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.26 E-value=1.9e-11 Score=112.41 Aligned_cols=87 Identities=34% Similarity=0.612 Sum_probs=74.2
Q ss_pred CccchhhHHHHHHHHHHHhhccCc--CCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKEL--KDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~--~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++.++|.++..|+..++..... .++|++||+||+|+.+..+.+++.+.+.+..+. ...+.++++||++|.||+++
T Consensus 99 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l 177 (190)
T 2h57_A 99 DSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIK-DKPWHICASDAIKGEGLQEG 177 (190)
T ss_dssp ETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCC-SSCEEEEECBTTTTBTHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhcc-CCceEEEEccCCCCcCHHHH
Confidence 678889999999999998876544 679999999999998888889999888765553 56889999999999999999
Q ss_pred HHHHHHHHHH
Q psy15732 534 LDWLSRQLIA 543 (550)
Q Consensus 534 f~~l~~~~~~ 543 (550)
|+||.+.+.+
T Consensus 178 ~~~l~~~i~~ 187 (190)
T 2h57_A 178 VDWLQDQIQT 187 (190)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 34
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.25 E-value=2.4e-12 Score=112.00 Aligned_cols=65 Identities=28% Similarity=0.621 Sum_probs=52.4
Q ss_pred ccCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHHHHH
Q psy15732 61 ILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELIEKI 139 (550)
Q Consensus 61 ~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~~~ 139 (550)
.+.+++.|+||++.|. + |++++|||+||..|+..|+. ....||.||..+... +.|..+.++++.+
T Consensus 49 ~~~~~~~C~iC~~~~~---~--~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~-------~~~~~~~~~i~~~ 113 (138)
T 4ayc_A 49 VLENELQCIICSEYFI---E--AVTLNCAHSFCSYCINEWMK--RKIECPICRKDIKSK-------TYSLVLDNCINKM 113 (138)
T ss_dssp HHHHHSBCTTTCSBCS---S--EEEETTSCEEEHHHHHHHTT--TCSBCTTTCCBCCCE-------EECHHHHHHHHHH
T ss_pred hccccCCCcccCcccC---C--ceECCCCCCccHHHHHHHHH--cCCcCCCCCCcCCCC-------CCccchhHHHHHH
Confidence 3556789999999999 9 99999999999999999987 456799999987542 4455555555544
No 35
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=3.8e-13 Score=106.80 Aligned_cols=65 Identities=25% Similarity=0.554 Sum_probs=53.4
Q ss_pred hccCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccC----CCccCCCCCCCcccCCCCCccCccccHHHHH
Q psy15732 60 LILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIK----DDTITCPFDRQPTPVGYSGVWGLKKNFALLE 134 (550)
Q Consensus 60 ~~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~----~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~ 134 (550)
..+.+.+.|+||++.|. + |++++|||+||..|+..|+.. .....||.||..+... .+.+|+.+.+
T Consensus 14 ~~~~~~~~C~IC~~~~~---~--p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~-----~~~~n~~l~~ 82 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLT---Q--PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE-----NIRPNRHVAN 82 (85)
T ss_dssp CCCCCCCCCTTTCSCCS---S--CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS-----SCCCSCCCCC
T ss_pred HHccCCCCCCCCCcccC---C--ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH-----hcCccHHHHH
Confidence 34567899999999999 9 999999999999999998863 3467899999998865 3666765543
No 36
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=2.7e-12 Score=102.53 Aligned_cols=70 Identities=36% Similarity=0.764 Sum_probs=56.4
Q ss_pred ccCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCC-CccCCCCCCCcccCCCCCccCccccHHHH
Q psy15732 61 ILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKD-DTITCPFDRQPTPVGYSGVWGLKKNFALL 133 (550)
Q Consensus 61 ~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~-~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~ 133 (550)
.+.+.+.|+||++.|... ++.|++++|||+||..|+..|+... ....||.||..+... ++..++.|+.+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~-~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~--~i~~l~~n~~~~ 81 (88)
T 2ct2_A 11 ALREVLECPICMESFTEE-QLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT--SLTQLTDNLTVL 81 (88)
T ss_dssp CCCSCCBCTTTCCBCCTT-SSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS--STTTSEECTTTT
T ss_pred hccCCCCCccCCcccccc-CCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch--hHHHHHHHHHHH
Confidence 456789999999999843 3459999999999999999998732 357899999998764 466788887653
No 37
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.19 E-value=6.7e-11 Score=118.70 Aligned_cols=88 Identities=52% Similarity=0.789 Sum_probs=77.3
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|+++.++|..+..|+..++......++|++||+||+|+.+....+++...+++..+. ...+.|++|||++|.||+++|+
T Consensus 241 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~-~~~~~~~~vSAk~g~gi~el~~ 319 (329)
T 3o47_A 241 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-HRNWYIQATCATSGDGLYEGLD 319 (329)
T ss_dssp ETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCC-SSCEEEEECBTTTTBTHHHHHH
T ss_pred ECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhh-cCCCEEEEEECCCCcCHHHHHH
Confidence 677788999999999998877666789999999999999888889999999876663 7789999999999999999999
Q ss_pred HHHHHHHHh
Q psy15732 536 WLSRQLIAA 544 (550)
Q Consensus 536 ~l~~~~~~~ 544 (550)
||++.+.++
T Consensus 320 ~l~~~l~~~ 328 (329)
T 3o47_A 320 WLSNQLRNQ 328 (329)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHHHhc
Confidence 999988654
No 38
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.2e-11 Score=97.08 Aligned_cols=59 Identities=27% Similarity=0.505 Sum_probs=49.9
Q ss_pred cCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHH
Q psy15732 62 LELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALL 133 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~ 133 (550)
....+.|+||++.|. + |++++|||+||..|+..|+. ....||.||..+.. .+..|..+.
T Consensus 12 ~~~~~~C~IC~~~~~---~--p~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~------~~~~~~~l~ 70 (81)
T 2csy_A 12 EEIPFRCFICRQAFQ---N--PVVTKCRHYFCESCALEHFR--ATPRCYICDQPTGG------IFNPAKELM 70 (81)
T ss_dssp CCCCSBCSSSCSBCC---S--EEECTTSCEEEHHHHHHHHH--HCSBCSSSCCBCCS------CCEECHHHH
T ss_pred CCCCCCCcCCCchhc---C--eeEccCCCHhHHHHHHHHHH--CCCcCCCcCccccc------cCCcHHHHH
Confidence 456789999999999 9 99999999999999999987 45689999999862 467775543
No 39
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.18 E-value=1e-11 Score=104.51 Aligned_cols=73 Identities=27% Similarity=0.535 Sum_probs=58.1
Q ss_pred cCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCC--CCCccCccccHHHHHHHHHH
Q psy15732 62 LELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG--YSGVWGLKKNFALLELIEKI 139 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~--~~~~~~l~~n~~l~~~~~~~ 139 (550)
..+++.|+||++.|. + |++++|||+||..|+..|+.. ....||.||..+... ......+..|..+.++++.+
T Consensus 12 ~~~~~~C~iC~~~~~---~--p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~ 85 (115)
T 3l11_A 12 SLSECQCGICMEILV---E--PVTLPCNHTLCKPCFQSTVEK-ASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKH 85 (115)
T ss_dssp CHHHHBCTTTCSBCS---S--CEECTTSCEECHHHHCCCCCT-TTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHH
T ss_pred CCCCCCCccCCcccC---c--eeEcCCCCHHhHHHHHHHHhH-CcCCCCCCCcccCccccccccccchhhHHHHHHHHHH
Confidence 456899999999999 9 999999999999999999864 357899999998641 00112467888888888776
Q ss_pred H
Q psy15732 140 Q 140 (550)
Q Consensus 140 ~ 140 (550)
.
T Consensus 86 ~ 86 (115)
T 3l11_A 86 Y 86 (115)
T ss_dssp S
T ss_pred C
Confidence 4
No 40
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.9e-11 Score=93.85 Aligned_cols=54 Identities=26% Similarity=0.660 Sum_probs=47.2
Q ss_pred ccCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccC-CCccCCCCCCCcccCC
Q psy15732 61 ILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIK-DDTITCPFDRQPTPVG 119 (550)
Q Consensus 61 ~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~-~~~~~CP~Cr~~~~~~ 119 (550)
.+.+.+.|+||++.|. + |++++|||+||..|+..|+.. .....||.||..+...
T Consensus 16 ~~~~~~~C~IC~~~~~---~--~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 16 KLQEEVICPICLDILQ---K--PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCCBCTTTCSBCS---S--EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred hCccCCEeccCCcccC---C--eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 4567899999999999 9 999999999999999999863 3567899999998764
No 41
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.17 E-value=8.7e-11 Score=107.59 Aligned_cols=96 Identities=8% Similarity=0.080 Sum_probs=76.0
Q ss_pred eEEEEEeeCCCC----------------CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCC----CCCCCHHHHH
Q psy15732 444 EMRVVTLGLDSA----------------DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDI----PGCETVESIT 503 (550)
Q Consensus 444 ~~~~~~~~~d~~----------------D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl----~~~~~~~~i~ 503 (550)
.+.+.+|++.|. |+++.++|+.+..|+..+.......++|++|++||+|| ...++.+++.
T Consensus 66 ~~~l~i~Dt~G~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~ 145 (184)
T 3ihw_A 66 SYLLLIRDEGGPPELQFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRAR 145 (184)
T ss_dssp EEEEEEEECSSSCCHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHH
T ss_pred EEEEEEEECCCChhhheecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHH
Confidence 355667777664 88999999999999999976654567999999999999 3456677766
Q ss_pred HhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHHh
Q psy15732 504 EAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 504 ~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~~ 544 (550)
+.... ...+.|++|||++|.||+++|+||++.+..+
T Consensus 146 ~~~~~-----~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 146 KLSTD-----LKRCTYYETCATYGLNVERVFQDVAQKVVAL 181 (184)
T ss_dssp HHHHH-----TTTCEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred HHHHH-----cCCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 65542 1236899999999999999999999988654
No 42
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.1e-11 Score=94.76 Aligned_cols=53 Identities=23% Similarity=0.469 Sum_probs=46.7
Q ss_pred hccCCcceeccccccccccCCCCcEEe-cCCCcchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 60 LILELALECRVCEDIFLTQGDKVPRLL-HCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 60 ~~~~~~l~C~iC~~~~~~~~~~~P~~l-~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
..+.+.+.|+||++.|. + |+++ +|||+||..|+..|+. ....||.||..+...
T Consensus 10 ~~~~~~~~C~IC~~~~~---~--p~~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 10 SELTPYILCSICKGYLI---D--ATTITECLHTFCKSCIVRHFY--YSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCCCGGGSCTTTSSCCS---S--CEECSSSCCEECHHHHHHHHH--HCSSCTTTCCCCCSS
T ss_pred hhcCCCCCCCCCChHHH---C--cCEECCCCCHHHHHHHHHHHH--cCCcCCCcCcccCcc
Confidence 34677899999999999 9 9998 9999999999999987 356899999998764
No 43
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17 E-value=8.2e-12 Score=90.24 Aligned_cols=51 Identities=33% Similarity=0.656 Sum_probs=44.4
Q ss_pred CCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCCCCCc
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGV 123 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~ 123 (550)
.+.+.|+||++.|. + |++|+|||+||..|+..+ ...||.||..+..+.+++
T Consensus 4 ~~~~~C~IC~~~~~---~--p~~l~CgH~fC~~Ci~~~-----~~~CP~Cr~~~~~~~~~~ 54 (56)
T 1bor_A 4 FQFLRCQQCQAEAK---C--PKLLPCLHTLCSGCLEAS-----GMQCPICQAPWPLGADTP 54 (56)
T ss_dssp CCCSSCSSSCSSCB---C--CSCSTTSCCSBTTTCSSS-----SSSCSSCCSSSSCCSSCC
T ss_pred ccCCCceEeCCccC---C--eEEcCCCCcccHHHHccC-----CCCCCcCCcEeecCCcCc
Confidence 46789999999999 9 999999999999999772 457999999998876554
No 44
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.17 E-value=1e-10 Score=107.85 Aligned_cols=78 Identities=24% Similarity=0.364 Sum_probs=66.9
Q ss_pred chhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcE-EEEEecccCCCCHHHHHHHH
Q psy15732 459 DKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSW-HIQACNAQSGEGLHEGLDWL 537 (550)
Q Consensus 459 d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~-~~~~~SA~~g~gi~e~f~~l 537 (550)
+.++|.....|+.++. ....++|++||+||+||.+..+.+++.+.+. ..++ .++++||++|.||+++|+||
T Consensus 115 ~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~gv~~l~~~l 186 (198)
T 3t1o_A 115 NAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDALPVEMVRAVVD------PEGKFPVLEAVATEGKGVFETLKEV 186 (198)
T ss_dssp HHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTCCCHHHHHHHHC------TTCCSCEEECBGGGTBTHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccccCHHHHHHHHH------hcCCceEEEEecCCCcCHHHHHHHH
Confidence 6678888888988873 3347899999999999998899999998887 3445 89999999999999999999
Q ss_pred HHHHHHh
Q psy15732 538 SRQLIAA 544 (550)
Q Consensus 538 ~~~~~~~ 544 (550)
++.+.++
T Consensus 187 ~~~i~~~ 193 (198)
T 3t1o_A 187 SRLVLAR 193 (198)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
No 45
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.17 E-value=8.7e-11 Score=105.13 Aligned_cols=83 Identities=16% Similarity=0.131 Sum_probs=65.1
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|++++++|+....|+..+.......++|++||+||+|+.. .++.++...... ...+.++++||++|.||+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l 154 (166)
T 3q72_A 81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV------VFDCKFIETSAALHHNVQAL 154 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHH------HTTCEEEECBGGGTBSHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHH------HhCCcEEEeccCCCCCHHHH
Confidence 7778899999999999887665557899999999999964 345555544433 23468999999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|+||.+.+..+
T Consensus 155 ~~~l~~~~~~~ 165 (166)
T 3q72_A 155 FEGVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999988754
No 46
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.16 E-value=1.4e-11 Score=110.25 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=62.1
Q ss_pred ccCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHHHHHH
Q psy15732 61 ILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELIEKIQ 140 (550)
Q Consensus 61 ~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~~~~ 140 (550)
.+.+.+.||||+++|. + |++++|||+||+.||..||...+. .||.|+.++... .|.+|..|.++++.+.
T Consensus 102 ~ip~~f~CPI~~elm~---D--PV~~~~Ghtfer~~I~~~l~~~~~-tcP~t~~~l~~~-----~L~pN~~Lk~~Ie~~~ 170 (179)
T 2f42_A 102 EIPDYLCGKISFELMR---E--PCITPSGITYDRKDIEEHLQRVGH-FDPVTRSPLTQD-----QLIPNLAMKEVIDAFI 170 (179)
T ss_dssp CCCGGGBCTTTCSBCS---S--EEECTTSCEEEHHHHHHHHHHTCS-BCTTTCCBCCGG-----GCEECHHHHHHHHHHH
T ss_pred CCcHhhcccCccccCC---C--CeECCCCCEECHHHHHHHHHhCCC-CCCCCcCCCChh-----hCcchHHHHHHHHHHH
Confidence 4568899999999999 9 999999999999999999975333 699999998764 5899999999999886
Q ss_pred hc
Q psy15732 141 TN 142 (550)
Q Consensus 141 ~~ 142 (550)
..
T Consensus 171 ~~ 172 (179)
T 2f42_A 171 QE 172 (179)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 47
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.16 E-value=9.4e-11 Score=105.24 Aligned_cols=83 Identities=18% Similarity=0.159 Sum_probs=68.1
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCC--CCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIP--GCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~--~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|++++++|+....|+..+.......++|++||+||+|+. ..++.+++.+... ...+.++++||++|.||+++
T Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~v~~l 157 (169)
T 3q85_A 84 SVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG------TLSCKHIETSAALHHNTREL 157 (169)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHH------HTTCEEEECBTTTTBSHHHH
T ss_pred ECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHH------HcCCcEEEecCccCCCHHHH
Confidence 677889999999999998876555689999999999996 4456666665544 33568999999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|+||.+.+..+
T Consensus 158 ~~~l~~~i~~~ 168 (169)
T 3q85_A 158 FEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999988654
No 48
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.15 E-value=9.5e-11 Score=124.70 Aligned_cols=88 Identities=40% Similarity=0.733 Sum_probs=77.6
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|+++.++|.+...|+..++......++|++||+||+||.+..+.+++.+.+++.... .+.+.|++|||++|+||+++|+
T Consensus 398 D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~SA~~g~gi~~l~~ 476 (497)
T 3lvq_E 398 DCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIR-DRNWYVQPSCATSGDGLYEGLT 476 (497)
T ss_dssp ETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCC-SSCEEEEECBTTTTBTHHHHHH
T ss_pred ECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhh-cCCeEEEEEECCCCCCHHHHHH
Confidence 778899999999999999887666789999999999999888899999999876553 6789999999999999999999
Q ss_pred HHHHHHHHh
Q psy15732 536 WLSRQLIAA 544 (550)
Q Consensus 536 ~l~~~~~~~ 544 (550)
||.+.+.+.
T Consensus 477 ~l~~~~~~~ 485 (497)
T 3lvq_E 477 WLTSNYKSK 485 (497)
T ss_dssp HHHHHCC--
T ss_pred HHHHHHHhc
Confidence 999988654
No 49
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.15 E-value=5e-12 Score=105.95 Aligned_cols=72 Identities=22% Similarity=0.554 Sum_probs=56.8
Q ss_pred hccCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccC-CCccCCCCCCCcccCCCCCccCccccHHHHHHHHH
Q psy15732 60 LILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIK-DDTITCPFDRQPTPVGYSGVWGLKKNFALLELIEK 138 (550)
Q Consensus 60 ~~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~-~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~~ 138 (550)
..+.+.+.|+||++.|. + |++++|||+||..|+..|+.. .....||.||..+... .+..|..+.++++.
T Consensus 16 ~~~~~~~~C~IC~~~~~---~--p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~-----~~~~~~~l~~~~~~ 85 (112)
T 1jm7_A 16 NAMQKILECPICLELIK---E--PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR-----SLQESTRFSQLVEE 85 (112)
T ss_dssp HHHHHHTSCSSSCCCCS---S--CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT-----TCBCCCSSSHHHHH
T ss_pred HhccCCCCCcccChhhc---C--eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh-----hcCccHHHHHHHHH
Confidence 34567889999999999 9 999999999999999999874 2346899999998765 35666655555555
Q ss_pred HHh
Q psy15732 139 IQT 141 (550)
Q Consensus 139 ~~~ 141 (550)
+..
T Consensus 86 ~~~ 88 (112)
T 1jm7_A 86 LLK 88 (112)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 50
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.14 E-value=1.1e-10 Score=109.33 Aligned_cols=83 Identities=16% Similarity=0.134 Sum_probs=64.1
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|++|.++|+.+..|+..+.......++|++|||||+||.. .+..++...... ...+.|++|||++|.||+++
T Consensus 120 dvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~------~~~~~~~e~SAk~g~~v~el 193 (211)
T 2g3y_A 120 SITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAV------VFDCKFIETSAAVQHNVKEL 193 (211)
T ss_dssp ETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHH------HHTCEEEECBTTTTBSHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHH------HcCCEEEEEeCCCCCCHHHH
Confidence 7888999999999988776543345799999999999953 355554443322 23468999999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|+||++.+...
T Consensus 194 f~~l~~~i~~~ 204 (211)
T 2g3y_A 194 FEGIVRQVRLR 204 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988654
No 51
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=2.3e-11 Score=91.24 Aligned_cols=53 Identities=21% Similarity=0.523 Sum_probs=46.1
Q ss_pred ccCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 61 ILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 61 ~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
.+.+.+.|+||++.+. + |++++|||+||..|+..|+.. ....||.||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~---~--p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLC---S--PKQTECGHRFCESCMAALLSS-SSPKCTACQESIVKD 63 (66)
T ss_dssp SCCCCEECTTTCCEES---S--CCCCSSSCCCCHHHHHHHHTT-SSCCCTTTCCCCCTT
T ss_pred cCCcCCCCCCCChHhc---C--eeECCCCCHHHHHHHHHHHHh-CcCCCCCCCcCCChh
Confidence 3567899999999999 9 999999999999999999852 456799999997654
No 52
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.12 E-value=1.9e-11 Score=109.88 Aligned_cols=72 Identities=24% Similarity=0.429 Sum_probs=60.6
Q ss_pred ccCCcceeccccccccccCCCCcEEe-cCCCcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHHHHH
Q psy15732 61 ILELALECRVCEDIFLTQGDKVPRLL-HCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELIEKI 139 (550)
Q Consensus 61 ~~~~~l~C~iC~~~~~~~~~~~P~~l-~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~~~ 139 (550)
.+.+.+.|+||++.|. + |+++ +|||+||..|+..|+.. ....||.||..+.... .+.+|..+.++++.+
T Consensus 50 ~~~~~~~C~IC~~~~~---~--p~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~----~l~~~~~l~~~i~~~ 119 (165)
T 2ckl_B 50 SLHSELMCPICLDMLK---N--TMTTKECLHRFCADCIITALRS-GNKECPTCRKKLVSKR----SLRPDPNFDALISKI 119 (165)
T ss_dssp CCHHHHBCTTTSSBCS---S--EEEETTTCCEEEHHHHHHHHHT-TCCBCTTTCCBCCSGG----GEEECHHHHHHHHHH
T ss_pred hCCCCCCCcccChHhh---C--cCEeCCCCChhHHHHHHHHHHh-CcCCCCCCCCcCCCcc----cCCcCHHHHHHHHHH
Confidence 3567889999999999 9 9998 99999999999999884 3567999999986433 589999999999988
Q ss_pred Hhc
Q psy15732 140 QTN 142 (550)
Q Consensus 140 ~~~ 142 (550)
...
T Consensus 120 ~~~ 122 (165)
T 2ckl_B 120 YPS 122 (165)
T ss_dssp C--
T ss_pred Hcc
Confidence 653
No 53
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.11 E-value=2e-10 Score=106.70 Aligned_cols=83 Identities=12% Similarity=0.109 Sum_probs=67.6
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcE-EEEEecccCCCCHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSW-HIQACNAQSGEGLHE 532 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~-~~~~~SA~~g~gi~e 532 (550)
|+++.++|+.+..|+..+.... ..++|++||+||+|+.. .++.+++.+.+. ..++ .+++|||++|.||++
T Consensus 110 D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~~SA~~g~gi~~ 182 (201)
T 2hup_A 110 DITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAE------HYDILCAIETSAKDSSNVEE 182 (201)
T ss_dssp ETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH------HTTCSEEEECBTTTTBSHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHH------HcCCCEEEEEeCCCCCCHHH
Confidence 7888899999999998886543 36799999999999964 466777776554 2345 899999999999999
Q ss_pred HHHHHHHHHHHhc
Q psy15732 533 GLDWLSRQLIAAG 545 (550)
Q Consensus 533 ~f~~l~~~~~~~~ 545 (550)
+|+||++.+.++.
T Consensus 183 l~~~l~~~i~~~~ 195 (201)
T 2hup_A 183 AFLRVATELIMRH 195 (201)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987654
No 54
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=4.3e-11 Score=88.88 Aligned_cols=48 Identities=29% Similarity=0.715 Sum_probs=41.9
Q ss_pred hccCCcceeccccccccccCCCCcEEecCCCcchhhhHhhccc-CCCccCCCCC
Q psy15732 60 LILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPI-KDDTITCPFD 112 (550)
Q Consensus 60 ~~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~-~~~~~~CP~C 112 (550)
..+.+.+.|+||++.|. + |++++|||+||..|+..|+. .+....||.|
T Consensus 15 ~~~~~~~~C~IC~~~~~---~--p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQ---K--PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCS---S--CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhC---C--eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34678899999999999 9 99999999999999999987 3346689998
No 55
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.10 E-value=1.9e-10 Score=103.70 Aligned_cols=83 Identities=19% Similarity=0.183 Sum_probs=62.8
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|++++.+|+.+..|+..+.......++|++||+||+|+... ++.++...... ..++.+++|||++|.||+++
T Consensus 86 d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~g~gi~~l 159 (175)
T 2nzj_A 86 SIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAV------VFDCKFIETSATLQHNVAEL 159 (175)
T ss_dssp ETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHH------HHTSEEEECBTTTTBSHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHH------HcCCeEEEEecCCCCCHHHH
Confidence 67788899999999888865544457999999999999653 45555554333 23458999999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|+||.+.+...
T Consensus 160 ~~~l~~~~~~~ 170 (175)
T 2nzj_A 160 FEGVVRQLRLR 170 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988654
No 56
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.10 E-value=2.6e-10 Score=105.47 Aligned_cols=83 Identities=18% Similarity=0.159 Sum_probs=66.5
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|++++++|+.+..|+..+.......++|++||+||+|+.. .++.+++.+... ...+.+++|||++|.||+++
T Consensus 105 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~------~~~~~~~e~Sa~~~~~v~~l 178 (195)
T 3cbq_A 105 SVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG------TLSCKHIETSAALHHNTREL 178 (195)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHH------HTTCEEEEEBTTTTBSHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHH------HhCCEEEEEcCCCCCCHHHH
Confidence 7788899999999999887654445799999999999964 356666665443 22358999999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|+||++.+...
T Consensus 179 f~~l~~~i~~~ 189 (195)
T 3cbq_A 179 FEGAVRQIRLR 189 (195)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999988653
No 57
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.09 E-value=1.5e-10 Score=103.55 Aligned_cols=82 Identities=18% Similarity=0.195 Sum_probs=67.5
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++.++|.....|+..+.......++|++||+||+|+.. .++.+++.+.+. ..++.++++||++|.||+++
T Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l 157 (168)
T 1u8z_A 84 SITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD------QWNVNYVETSAKTRANVDKV 157 (168)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH------HHTCEEEECCTTTCTTHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHH------HcCCeEEEeCCCCCCCHHHH
Confidence 7888999999999999887765556899999999999954 456666666554 33468999999999999999
Q ss_pred HHHHHHHHHH
Q psy15732 534 LDWLSRQLIA 543 (550)
Q Consensus 534 f~~l~~~~~~ 543 (550)
|+||.+.+.+
T Consensus 158 ~~~l~~~i~~ 167 (168)
T 1u8z_A 158 FFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 58
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.08 E-value=4.7e-11 Score=111.81 Aligned_cols=71 Identities=13% Similarity=0.160 Sum_probs=62.9
Q ss_pred cCCcceeccccccccccCCCCcEEe-cCCCcchhhhHhhcccCCCccCCCC--CCCcccCCCCCccCccccHHHHHHHHH
Q psy15732 62 LELALECRVCEDIFLTQGDKVPRLL-HCGHTVCLACLLRLPIKDDTITCPF--DRQPTPVGYSGVWGLKKNFALLELIEK 138 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~~~P~~l-~CgH~fC~~Cl~~~~~~~~~~~CP~--Cr~~~~~~~~~~~~l~~n~~l~~~~~~ 138 (550)
....+.||||+++|. + |++. .|||+||+.||..||...+...||. |+..+... .|.+|..|.++++.
T Consensus 178 ~~~el~CPIcl~~f~---D--PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~-----dL~pN~~L~~lve~ 247 (267)
T 3htk_C 178 GKIELTCPITCKPYE---A--PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR-----DFVRDPIMELRCKI 247 (267)
T ss_dssp SBCCSBCTTTSSBCS---S--EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG-----GEEECHHHHHHHHH
T ss_pred CceeeECcCccCccc---C--CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchh-----hCCcCHHHHHHHHH
Confidence 467899999999999 9 9986 9999999999999998656688999 99988765 59999999999988
Q ss_pred HHhc
Q psy15732 139 IQTN 142 (550)
Q Consensus 139 ~~~~ 142 (550)
.+..
T Consensus 248 ~k~r 251 (267)
T 3htk_C 248 AKMK 251 (267)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 59
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.08 E-value=3e-11 Score=102.07 Aligned_cols=69 Identities=23% Similarity=0.342 Sum_probs=56.0
Q ss_pred hhccCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHHHH
Q psy15732 59 ILILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELIEK 138 (550)
Q Consensus 59 ~~~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~~ 138 (550)
...+.+.+.|+||++.|. + |++++|||+||..|+..|+... ...||.||..+... .+.+|..+.+++..
T Consensus 12 ~~~~~~~~~C~IC~~~~~---~--p~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~-----~~~~~~~l~~~i~~ 80 (118)
T 3hct_A 12 DPPLESKYECPICLMALR---E--AVQTPCGHRFCKACIIKSIRDA-GHKCPVDNEILLEN-----QLFPDNFAKREILS 80 (118)
T ss_dssp SSCCCGGGBCTTTCSBCS---S--EEECTTSCEEEHHHHHHHHHHH-CSBCTTTCCBCCGG-----GCEECHHHHHHHHT
T ss_pred ccCCCCCCCCCcCChhhc---C--eEECCcCChhhHHHHHHHHhhC-CCCCCCCCCCcCHH-----hcccCHHHHHHHcc
Confidence 345678899999999999 9 9999999999999999998732 23799999998764 35677777776654
No 60
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.08 E-value=2.3e-10 Score=104.33 Aligned_cols=84 Identities=17% Similarity=0.176 Sum_probs=69.1
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++.++|..+..|+..+.......++|++||+||+|+.. .+..+++.+.+. ...+.++++||++|.||+++
T Consensus 98 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l 171 (187)
T 2a9k_A 98 SITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE------QWNVNYVETSAKTRANVDKV 171 (187)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHH------HTTCEEEECCTTTCTTHHHH
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH------HcCCeEEEeCCCCCCCHHHH
Confidence 7888999999999999887765556899999999999954 456667666554 33468999999999999999
Q ss_pred HHHHHHHHHHhc
Q psy15732 534 LDWLSRQLIAAG 545 (550)
Q Consensus 534 f~~l~~~~~~~~ 545 (550)
|+||.+.+...+
T Consensus 172 ~~~l~~~i~~~~ 183 (187)
T 2a9k_A 172 FFDLMREIRARK 183 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999987654
No 61
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.08 E-value=4.9e-10 Score=101.53 Aligned_cols=96 Identities=10% Similarity=0.026 Sum_probs=70.7
Q ss_pred eEEEEEeeCCCC----------------CccchhhHHHHHHHHHHHhhc--cCcCCCeEEEEecCCCCC----CCCCHHH
Q psy15732 444 EMRVVTLGLDSA----------------DSADKERLPEALAELTKLIAE--KELKDAALLLLANKQDIP----GCETVES 501 (550)
Q Consensus 444 ~~~~~~~~~d~~----------------D~~d~~~~~~~~~~l~~~~~~--~~~~~~pili~~NK~Dl~----~~~~~~~ 501 (550)
.+.+.+|++.|. |++++++|.....|+..+... ....++|++||+||+|+. ..++.++
T Consensus 53 ~~~l~i~Dt~G~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~ 132 (178)
T 2iwr_A 53 THLVLIREEAGAPDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDAR 132 (178)
T ss_dssp EEEEEEEECSSSCCHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHH
T ss_pred EEEEEEEECCCCchhHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHH
Confidence 355677777665 888999998888865444322 123579999999999993 3456677
Q ss_pred HHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHHh
Q psy15732 502 ITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 502 i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~~ 544 (550)
+.+.... ...+.+++|||++|.||+++|+||++.+.+.
T Consensus 133 ~~~~~~~-----~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 133 ARALXAD-----MKRCSYYETXATYGLNVDRVFQEVAQKVVTL 170 (178)
T ss_dssp HHHHHHH-----HSSEEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-----hcCCeEEEEeccccCCHHHHHHHHHHHHHHH
Confidence 6665441 1257899999999999999999999988543
No 62
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.07 E-value=3.1e-10 Score=105.43 Aligned_cols=83 Identities=17% Similarity=0.182 Sum_probs=67.9
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++.++|..+..|+..+.......++|++||+||+|+.. .++.+++.+.+. ..++.++++||++|.||+++
T Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~g~gi~~l 167 (206)
T 2bov_A 94 SITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE------QWNVNYVETSAKTRANVDKV 167 (206)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH------HHTCEEEEECTTTCTTHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHH------HhCCeEEEEeCCCCCCHHHH
Confidence 7888999999999999887665456899999999999954 456667666554 23458999999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|+||.+.+...
T Consensus 168 ~~~l~~~i~~~ 178 (206)
T 2bov_A 168 FFDLMREIRAR 178 (206)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999988543
No 63
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.07 E-value=5.5e-11 Score=116.69 Aligned_cols=71 Identities=17% Similarity=0.174 Sum_probs=61.4
Q ss_pred cCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHHHHHHh
Q psy15732 62 LELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELIEKIQT 141 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~~~~~ 141 (550)
..+.+.||||++.|. + |++++|||+||+.||..|+..++ ..||.|+.++... .+.+|..+.++++.+..
T Consensus 205 ~~~~~~c~i~~~~~~---d--Pv~~~~gh~f~~~~i~~~~~~~~-~~cP~~~~~~~~~-----~l~~n~~l~~~i~~~~~ 273 (281)
T 2c2l_A 205 IPDYLCGKISFELMR---E--PCITPSGITYDRKDIEEHLQRVG-HFNPVTRSPLTQE-----QLIPNLAMKEVIDAFIS 273 (281)
T ss_dssp CCSTTBCTTTCSBCS---S--EEECSSCCEEETTHHHHHHHHTC-SSCTTTCCCCCGG-----GCEECHHHHHHHHHHHT
T ss_pred CCcccCCcCcCCHhc---C--CeECCCCCEECHHHHHHHHHHCC-CCCcCCCCCCchh-----cCcccHHHHHHHHHHHH
Confidence 457899999999999 9 99999999999999999997433 3499999998754 58999999999998875
Q ss_pred cc
Q psy15732 142 ND 143 (550)
Q Consensus 142 ~~ 143 (550)
..
T Consensus 274 ~~ 275 (281)
T 2c2l_A 274 EN 275 (281)
T ss_dssp TC
T ss_pred HC
Confidence 43
No 64
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=6.8e-11 Score=86.17 Aligned_cols=47 Identities=30% Similarity=0.774 Sum_probs=41.1
Q ss_pred ccCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccC-CCccCCCCC
Q psy15732 61 ILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIK-DDTITCPFD 112 (550)
Q Consensus 61 ~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~-~~~~~CP~C 112 (550)
.+.+.+.|+||++.|. + |++++|||+||..|+..|+.. .....||.|
T Consensus 11 ~~~~~~~C~IC~~~~~---~--p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLK---E--PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCS---S--CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccC---c--cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4567899999999999 9 999999999999999999763 356789998
No 65
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.06 E-value=3.9e-10 Score=102.72 Aligned_cols=82 Identities=13% Similarity=0.116 Sum_probs=60.2
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|++++.+|+.+..|+..+.... ..++|++||+||+|+.+ .++.+++.+.+. ..++.++++||++|.||+++
T Consensus 89 d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~l 161 (183)
T 2fu5_C 89 DITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLAL------DYGIKFMETSAKANINVENA 161 (183)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHHH------HHTCEEEECCC---CCHHHH
T ss_pred ECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHHH------HcCCeEEEEeCCCCCCHHHH
Confidence 6677889999999998886542 35799999999999965 355666666543 23468999999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|+||.+.+..+
T Consensus 162 ~~~l~~~i~~~ 172 (183)
T 2fu5_C 162 FFTLARDIKAK 172 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988543
No 66
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.06 E-value=3.2e-10 Score=103.25 Aligned_cols=82 Identities=16% Similarity=0.087 Sum_probs=67.4
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEeccc-CCCCHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQ-SGEGLHE 532 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~-~g~gi~e 532 (550)
|+++.++|+....|+..+.......++|++||+||+|+.. .++.+++.+... ..++.++++||+ +|.||++
T Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~~~v~~ 171 (183)
T 3kkq_A 98 SVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT------KYNIPYIETSAKDPPLNVDK 171 (183)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH------HHTCCEEEEBCSSSCBSHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHH------HhCCeEEEeccCCCCCCHHH
Confidence 7888999999999998887655557899999999999965 566666666554 223579999999 9999999
Q ss_pred HHHHHHHHHHH
Q psy15732 533 GLDWLSRQLIA 543 (550)
Q Consensus 533 ~f~~l~~~~~~ 543 (550)
+|+||.+.+.+
T Consensus 172 l~~~l~~~i~~ 182 (183)
T 3kkq_A 172 TFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999998864
No 67
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.05 E-value=4e-10 Score=102.13 Aligned_cols=83 Identities=16% Similarity=0.152 Sum_probs=67.3
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|.++.++|..+..|+..++......++|++||+||+|+.. .++.+++..... ...+.++++||++|.||+++
T Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~gv~~l 162 (181)
T 2fn4_A 89 AINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGA------SHHVAYFEASAKLRLNVDEA 162 (181)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHH------HTTCEEEECBTTTTBSHHHH
T ss_pred eCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH------HcCCeEEEecCCCCCCHHHH
Confidence 7888999999999999887665556899999999999954 355555555433 34568999999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|+||.+.+.+.
T Consensus 163 ~~~l~~~~~~~ 173 (181)
T 2fn4_A 163 FEQLVRAVRKY 173 (181)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998664
No 68
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.05 E-value=3.8e-10 Score=100.86 Aligned_cols=82 Identities=16% Similarity=0.115 Sum_probs=65.1
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|++++.+|+.+..|+..+.......++|++||+||+|+.+ .++.+++.+.... -..+.++++||++|.||+++
T Consensus 83 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 83 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ-----WCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----TTSCEEEECBTTTTBSHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHH-----ccCCcEEEecCCCCCCHHHH
Confidence 7788899999989998887655456899999999999954 3456666654431 12568999999999999999
Q ss_pred HHHHHHHHH
Q psy15732 534 LDWLSRQLI 542 (550)
Q Consensus 534 f~~l~~~~~ 542 (550)
|+||.+.+.
T Consensus 158 ~~~l~~~i~ 166 (167)
T 1c1y_A 158 FYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998774
No 69
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.04 E-value=3.1e-10 Score=103.20 Aligned_cols=83 Identities=10% Similarity=0.021 Sum_probs=65.6
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|.++.++|+....|+..++......++|++||+||+|+.. .++.+++.+... ..++.++++||++|.||+++
T Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~v~~l 159 (181)
T 3t5g_A 86 SVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAE------SWNAAFLESSAKENQTAVDV 159 (181)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHH------HTTCEEEECCTTSHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHH------HhCCcEEEEecCCCCCHHHH
Confidence 7888999999999999887765556899999999999953 456666666554 33558999999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|+||.+.+...
T Consensus 160 ~~~l~~~~~~~ 170 (181)
T 3t5g_A 160 FRRIILEAEKM 170 (181)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999988653
No 70
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.2e-10 Score=88.79 Aligned_cols=49 Identities=27% Similarity=0.529 Sum_probs=43.3
Q ss_pred CCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
.+.+.|+||++.|. + |++++|||.||..|+..|+. ....||.||..+..
T Consensus 13 ~~~~~C~IC~~~~~---~--~~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCV---H--PVSLPCKHVFCYLCVKGASW--LGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCS---S--EEEETTTEEEEHHHHHHCTT--CSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccC---C--CEEccCCCHHHHHHHHHHHH--CCCcCcCcCchhCH
Confidence 46789999999999 9 99999999999999999987 34689999998753
No 71
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.02 E-value=6e-10 Score=102.42 Aligned_cols=82 Identities=12% Similarity=0.115 Sum_probs=65.7
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++.++|+....|+..+.... ..++|++||+||+|+.. .++.+++.+... ...+.++++||++|.||+++
T Consensus 102 d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l 174 (191)
T 2a5j_A 102 DITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFAR------EHGLIFMETSAKTACNVEEA 174 (191)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH------HHTCEEEEECTTTCTTHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHHH------HcCCEEEEEeCCCCCCHHHH
Confidence 6778889999999998886543 35799999999999954 456666665543 33468999999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|+||++.+.++
T Consensus 175 ~~~l~~~i~~~ 185 (191)
T 2a5j_A 175 FINTAKEIYRK 185 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 72
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.02 E-value=7.2e-10 Score=101.29 Aligned_cols=82 Identities=13% Similarity=0.212 Sum_probs=65.7
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC-CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC-ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGL 534 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~-~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f 534 (550)
|+++.++|+....|+..+.......++|++||+||+|+... ...+++.+... ...+.++++||++|.||+++|
T Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~g~gi~~l~ 157 (189)
T 4dsu_A 84 AINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLAR------SYGIPFIETSAKTRQGVDDAF 157 (189)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHH------HHTCCEEECCTTTCTTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHH------HcCCeEEEEeCCCCCCHHHHH
Confidence 77888999999999988877655678999999999999654 45555544433 234578999999999999999
Q ss_pred HHHHHHHHH
Q psy15732 535 DWLSRQLIA 543 (550)
Q Consensus 535 ~~l~~~~~~ 543 (550)
+||.+.+..
T Consensus 158 ~~l~~~~~~ 166 (189)
T 4dsu_A 158 YTLVREIRK 166 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998854
No 73
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.02 E-value=1.3e-10 Score=86.92 Aligned_cols=50 Identities=26% Similarity=0.557 Sum_probs=42.6
Q ss_pred Ccceeccccc-cccccCCCCc----EEecCCCcchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 64 LALECRVCED-IFLTQGDKVP----RLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 64 ~~l~C~iC~~-~~~~~~~~~P----~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
+++.|+||++ .|. + | ++++|||+||..|+..|+.. ....||.||..+...
T Consensus 2 ~~~~C~IC~~~~~~---~--~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 2 DDQGCPRCKTTKYR---N--PSLKLMVNVCGHTLCESCVDLLFVR-GAGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCSTTTTHHHH---C--SSCCEEECTTCCCEEHHHHHHHHHT-TSSSCTTTCCCCSSC
T ss_pred CCCcCCcCCCCccC---C--CccCeecCCCCCHhHHHHHHHHHHc-CCCcCCCCCCccccc
Confidence 4689999999 898 7 7 56799999999999999764 456899999998764
No 74
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.02 E-value=3.9e-10 Score=104.19 Aligned_cols=85 Identities=24% Similarity=0.252 Sum_probs=68.2
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCC-CHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGE-GLHE 532 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~-gi~e 532 (550)
|++++++|+.+..|+..+.......++|++||+||+|+.. .++.+++.+... ...+.++++||++|. ||++
T Consensus 107 D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~g~~gi~~ 180 (196)
T 2atv_A 107 DITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT------ELACAFYECSACTGEGNITE 180 (196)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH------HHTSEEEECCTTTCTTCHHH
T ss_pred ECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHH------HhCCeEEEECCCcCCcCHHH
Confidence 7888999999999998887655456899999999999954 455566655443 234689999999999 9999
Q ss_pred HHHHHHHHHHHhcC
Q psy15732 533 GLDWLSRQLIAAGV 546 (550)
Q Consensus 533 ~f~~l~~~~~~~~~ 546 (550)
+|+||++.+.++.+
T Consensus 181 l~~~l~~~i~~~~~ 194 (196)
T 2atv_A 181 IFYELCREVRRRRM 194 (196)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcc
Confidence 99999999876543
No 75
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.02 E-value=6.2e-10 Score=101.02 Aligned_cols=82 Identities=17% Similarity=0.162 Sum_probs=65.1
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++..+|+....|+..+.... ..++|++||+||+|+.. .+..+++.+.+. ...+.++++||++|.||+++
T Consensus 93 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~g~gi~~l 165 (181)
T 2efe_B 93 DVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQ------ENGLFFMETSAKTATNVKEI 165 (181)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH------HTTCEEEECCSSSCTTHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHH------HcCCEEEEEECCCCCCHHHH
Confidence 7788899999999998886553 35799999999999954 356666666554 33468999999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|+||.+.+.+.
T Consensus 166 ~~~l~~~~~~~ 176 (181)
T 2efe_B 166 FYEIARRLPRV 176 (181)
T ss_dssp HHHHHHTCC--
T ss_pred HHHHHHHHHhc
Confidence 99999887554
No 76
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.02 E-value=1.4e-10 Score=89.47 Aligned_cols=55 Identities=27% Similarity=0.602 Sum_probs=45.2
Q ss_pred ccCCcceeccccccccccCCCCcEEec--CCCcchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 61 ILELALECRVCEDIFLTQGDKVPRLLH--CGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 61 ~~~~~l~C~iC~~~~~~~~~~~P~~l~--CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
.+++++.||||++.+... + +++++ |||+||..|+..+|.. ....||.||+.+...
T Consensus 7 ~~~~~~~CpICle~~~~~-d--~~~~p~~CGH~fC~~Cl~~~~~~-~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEID-D--INFFPCTCGYQICRFCWHRIRTD-ENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCCCBCTTTCCBCCTT-T--TTCCSSTTSCCCCHHHHHHHTTS-SCSBCTTTCCBCSSC
T ss_pred ccccCCcCCccCccCccc-c--ccccccCCCCCcCHHHHHHHHhc-CCCCCCCCCCccCCC
Confidence 357889999999999633 5 66665 9999999999999864 457899999998764
No 77
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.02 E-value=6.2e-11 Score=90.34 Aligned_cols=51 Identities=25% Similarity=0.489 Sum_probs=44.2
Q ss_pred cCCcceeccccccccccCCCCc-------EEecCCCcchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 62 LELALECRVCEDIFLTQGDKVP-------RLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~~~P-------~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
..+.+.|+||++.|. + | +.++|||+||..|+..|+. ....||.||..+...
T Consensus 7 ~~~~~~C~IC~~~~~---~--~~~~~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 7 PSGTVSCPICMDGYS---E--IVQNGRLIVSTECGHVFCSQCLRDSLK--NANTCPTCRKKINHK 64 (71)
T ss_dssp CTTCCBCTTTCCBHH---H--HHTTTCCEEECTTSCEEEHHHHHHHHH--HCSBCTTTCCBCCCC
T ss_pred CCCCCCCcccChhhh---c--cccccCCeEeCCCCChHhHHHHHHHHH--cCCCCCCCCCccChh
Confidence 356789999999998 6 6 8889999999999999987 346899999998754
No 78
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.01 E-value=6e-11 Score=99.90 Aligned_cols=68 Identities=25% Similarity=0.436 Sum_probs=53.3
Q ss_pred ccCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHHHH
Q psy15732 61 ILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELIEK 138 (550)
Q Consensus 61 ~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~~ 138 (550)
.+.+.+.|+||++.|. + |++++|||+||..|+..|+.. ....||.||..+.... ..+.+..+.+++..
T Consensus 19 ~~~~~~~C~IC~~~~~---~--p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~----~~~~~~~l~~~i~~ 86 (116)
T 1rmd_A 19 HFVKSISCQICEHILA---D--PVETSCKHLFCRICILRCLKV-MGSYCPSCRYPCFPTD----LESPVKSFLNILNS 86 (116)
T ss_dssp HHHHHTBCTTTCSBCS---S--EEECTTSCEEEHHHHHHHHHH-TCSBCTTTCCBCCGGG----CBCCCHHHHHHHHH
T ss_pred hccCCCCCCCCCcHhc---C--cEEcCCCCcccHHHHHHHHhH-CcCcCCCCCCCCCHhh----ccccHHHHHHHHHH
Confidence 3456899999999999 9 999999999999999999874 2457999999987643 23445556555544
No 79
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.01 E-value=9.3e-10 Score=101.15 Aligned_cols=83 Identities=16% Similarity=0.118 Sum_probs=66.6
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC-CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG-CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGL 534 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~-~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f 534 (550)
|+++..+|..+..|+..+.......++|++||+||+|+.. .+..+++.+.+. ...+.++++||++|.||+++|
T Consensus 96 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l~ 169 (195)
T 1x3s_A 96 DVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFAR------KHSMLFIEASAKTCDGVQCAF 169 (195)
T ss_dssp ETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHH------HTTCEEEECCTTTCTTHHHHH
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHH------HcCCEEEEecCCCCCCHHHHH
Confidence 6788889999999999887654456799999999999954 345566555444 335689999999999999999
Q ss_pred HHHHHHHHHh
Q psy15732 535 DWLSRQLIAA 544 (550)
Q Consensus 535 ~~l~~~~~~~ 544 (550)
+||.+.+...
T Consensus 170 ~~l~~~~~~~ 179 (195)
T 1x3s_A 170 EELVEKIIQT 179 (195)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHHhh
Confidence 9999988654
No 80
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.00 E-value=3.4e-10 Score=114.05 Aligned_cols=85 Identities=19% Similarity=0.230 Sum_probs=68.4
Q ss_pred hhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCC-----------------CCCCHHHHHHhcC-----CCcccCCCcE
Q psy15732 460 KERLPEALAELTKLIAEKELKDAALLLLANKQDIP-----------------GCETVESITEAFD-----LYKLCCGRSW 517 (550)
Q Consensus 460 ~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~-----------------~~~~~~~i~~~~~-----l~~~~~~~~~ 517 (550)
..+|.++..|+..+..+....++|++|++||+||. +..+.+++.+++. +......+.+
T Consensus 239 ~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~ 318 (353)
T 1cip_A 239 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEI 318 (353)
T ss_dssp EEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCE
T ss_pred hhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCce
Confidence 57899999999999988777889999999999994 2356677766553 2221114689
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHh
Q psy15732 518 HIQACNAQSGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 518 ~~~~~SA~~g~gi~e~f~~l~~~~~~~ 544 (550)
.+++|||++|+||+++|+|+++.+.+.
T Consensus 319 ~~~etSA~~~~nV~~vF~~v~~~i~~~ 345 (353)
T 1cip_A 319 YTHFTCATDTKNVQFVFDAVTDVIIKN 345 (353)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECcCchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999988654
No 81
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.99 E-value=4.7e-10 Score=104.10 Aligned_cols=83 Identities=8% Similarity=0.018 Sum_probs=63.8
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++.++|+....|+..+.......++|++||+||+|+.. .++..+..+... ...+.++++||++|.||+++
T Consensus 104 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~~v~~l 177 (201)
T 3oes_A 104 SVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAE------SWGATFMESSARENQLTQGI 177 (201)
T ss_dssp ETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHH------HHTCEEEECCTTCHHHHHHH
T ss_pred eCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHH------HhCCeEEEEeCCCCCCHHHH
Confidence 7788999999999999987765556799999999999953 445555544443 33458999999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|+||.+.+...
T Consensus 178 ~~~l~~~i~~~ 188 (201)
T 3oes_A 178 FTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 99999988654
No 82
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.99 E-value=6.2e-10 Score=102.44 Aligned_cols=83 Identities=13% Similarity=0.124 Sum_probs=65.5
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++.++|+....|+..+.... ..++|++||+||+|+.. .++.+++.+.+. ..++.++++||++|.||+++
T Consensus 104 d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l 176 (192)
T 2fg5_A 104 DITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYAE------SIGAIVVETSAKNAINIEEL 176 (192)
T ss_dssp ETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH------TTTCEEEECBTTTTBSHHHH
T ss_pred eCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHH------HcCCEEEEEeCCCCcCHHHH
Confidence 6788889999999998886543 35799999999999963 556677776654 34578999999999999999
Q ss_pred HHHHHHHHHHhc
Q psy15732 534 LDWLSRQLIAAG 545 (550)
Q Consensus 534 f~~l~~~~~~~~ 545 (550)
|+||.+.+.+..
T Consensus 177 ~~~l~~~i~~~~ 188 (192)
T 2fg5_A 177 FQGISRQIPPLD 188 (192)
T ss_dssp HHHHHHTCC---
T ss_pred HHHHHHHHHhhC
Confidence 999998875543
No 83
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.99 E-value=7.5e-10 Score=101.56 Aligned_cols=83 Identities=13% Similarity=0.187 Sum_probs=66.7
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++..++..+..|+..+.......++|++||+||+|+.. .+..+++.+.+. ..++.++++||++|.||+++
T Consensus 102 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~v~~l 175 (195)
T 3bc1_A 102 DLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAE------KYGIPYFETSAANGTNISHA 175 (195)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHH------HHTCCEEECCTTTCTTHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH------HcCCCEEEEECCCCCCHHHH
Confidence 7888999999999999887665446799999999999964 455666665544 22357899999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|+||.+.+.++
T Consensus 176 ~~~l~~~~~~~ 186 (195)
T 3bc1_A 176 IEMLLDLIMKR 186 (195)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988653
No 84
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.99 E-value=1.1e-09 Score=98.96 Aligned_cols=81 Identities=15% Similarity=0.184 Sum_probs=64.1
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++..+|+....|+..+.... ..++|++||+||+|+.. .+..+++.+.+. ...+.++++||++|.||+++
T Consensus 96 d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l 168 (179)
T 1z0f_A 96 DITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAE------ENGLLFLEASAKTGENVEDA 168 (179)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH------HTTCEEEECCTTTCTTHHHH
T ss_pred eCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHH------HcCCEEEEEeCCCCCCHHHH
Confidence 7788888988888988775543 35799999999999953 456667666554 33468999999999999999
Q ss_pred HHHHHHHHHH
Q psy15732 534 LDWLSRQLIA 543 (550)
Q Consensus 534 f~~l~~~~~~ 543 (550)
|+||.+.+.+
T Consensus 169 ~~~l~~~i~~ 178 (179)
T 1z0f_A 169 FLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHhh
Confidence 9999998753
No 85
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=1.2e-10 Score=88.11 Aligned_cols=49 Identities=27% Similarity=0.530 Sum_probs=42.7
Q ss_pred cCCcceeccccccccccCCCCc-------EEecCCCcchhhhHhhcccCCCccCCCCCCCccc
Q psy15732 62 LELALECRVCEDIFLTQGDKVP-------RLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTP 117 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~~~P-------~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~ 117 (550)
+.+.+.|+||++.|. + | ++++|||.||..|+..|+. ....||.||..+.
T Consensus 12 ~~~~~~C~IC~~~~~---~--~~~~~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYS---E--IVQNGRLIVSTECGHVFCSQCLRDSLK--NANTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHH---H--HTTTTCCEEECSSSCEEEHHHHHHHHH--HCSSCTTTCCCCC
T ss_pred CCCCCCCcccCcccc---c--cccccCCeEeCCCCChhcHHHHHHHHH--cCCCCCCCCCccC
Confidence 467889999999998 5 5 8889999999999999987 3567999998865
No 86
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.98 E-value=1.1e-09 Score=101.70 Aligned_cols=82 Identities=15% Similarity=0.162 Sum_probs=57.1
Q ss_pred CccchhhHHHHHHHHHHHhhccC--cCCCeEEEEecCCCCCC---CCCHHHHHHhcCCCcccCCCcEEEEEecccC-CCC
Q psy15732 456 DSADKERLPEALAELTKLIAEKE--LKDAALLLLANKQDIPG---CETVESITEAFDLYKLCCGRSWHIQACNAQS-GEG 529 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~--~~~~pili~~NK~Dl~~---~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~-g~g 529 (550)
|+++..+|+....|+..+..... ..++|++||+||+|+.. .++.+++.+.+. ..++.++++||++ |.|
T Consensus 105 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~~g 178 (208)
T 2yc2_C 105 DVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWAT------TNTLDFFDVSANPPGKD 178 (208)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHH------HTTCEEEECCC------
T ss_pred ECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHH------HcCCEEEEeccCCCCcC
Confidence 67888899999999998876533 25799999999999965 456667666554 2346899999999 999
Q ss_pred HHHHHHHHHHHHHH
Q psy15732 530 LHEGLDWLSRQLIA 543 (550)
Q Consensus 530 i~e~f~~l~~~~~~ 543 (550)
|+++|+||.+.+.+
T Consensus 179 i~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 179 ADAPFLSIATTFYR 192 (208)
T ss_dssp -CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998754
No 87
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.98 E-value=1.4e-09 Score=96.76 Aligned_cols=82 Identities=12% Similarity=0.186 Sum_probs=64.3
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC-CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG-CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGL 534 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~-~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f 534 (550)
|.++..+|.++..|+..+.......++|++|++||+|+.. ....+++.+... ..++.++++||++|.||+++|
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l~ 156 (166)
T 2ce2_X 83 AINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLAR------SYGIPYIETSAKTRQGVEDAF 156 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH------HHTCCEEEECTTTCTTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHH------HcCCeEEEecCCCCCCHHHHH
Confidence 6778889999999998886655445799999999999965 344555555443 234579999999999999999
Q ss_pred HHHHHHHHH
Q psy15732 535 DWLSRQLIA 543 (550)
Q Consensus 535 ~~l~~~~~~ 543 (550)
+||.+.+.+
T Consensus 157 ~~l~~~~~~ 165 (166)
T 2ce2_X 157 YTLVREIRQ 165 (166)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998754
No 88
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.97 E-value=9.4e-10 Score=102.02 Aligned_cols=82 Identities=18% Similarity=0.160 Sum_probs=65.2
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++..+|+.+..|+..+.... ..++|++||+||+|+.. .++..++.+.+. ...+.+++|||++|.||+++
T Consensus 106 d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~SA~~g~gi~~l 178 (200)
T 2o52_A 106 DITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFAQ------ENELMFLETSALTGENVEEA 178 (200)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH------HTTCEEEEECTTTCTTHHHH
T ss_pred ECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHHH------HcCCEEEEEeCCCCCCHHHH
Confidence 6778889999999998886543 26799999999999953 455666665544 34568999999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|+||++.+..+
T Consensus 179 ~~~l~~~i~~~ 189 (200)
T 2o52_A 179 FLKCARTILNK 189 (200)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988653
No 89
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.97 E-value=1.2e-10 Score=101.10 Aligned_cols=53 Identities=23% Similarity=0.457 Sum_probs=46.3
Q ss_pred hccCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 60 LILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 60 ~~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
..+.+.+.|+||++.|. + |++++|||+||..||..|+.. ....||.||..+..
T Consensus 26 ~~l~~~~~C~IC~~~~~---~--pv~~~CgH~FC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLR---R--PFQAQCGHRYCSFCLASILSS-GPQNCAACVHEGIY 78 (141)
T ss_dssp GGCCGGGBCTTTCSBCS---S--EEECTTSCEEEHHHHHHHGGG-SCEECHHHHHTTCC
T ss_pred ccCCcCcCCCCCChhhc---C--cEECCCCCccCHHHHHHHHhc-CCCCCCCCCCcccc
Confidence 45788999999999999 9 999999999999999999873 34579999997654
No 90
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.97 E-value=6.5e-10 Score=104.40 Aligned_cols=82 Identities=16% Similarity=0.232 Sum_probs=65.7
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++..+|+....|+..+.......++|++||+||+|+.. .++.+++.+... ...+.++++||++|.||+++
T Consensus 116 D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~g~gi~~l 189 (217)
T 2f7s_A 116 DLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD------KYGIPYFETSAATGQNVEKA 189 (217)
T ss_dssp ETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH------HTTCCEEEEBTTTTBTHHHH
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHH------HCCCcEEEEECCCCCCHHHH
Confidence 7788999999999998886554446799999999999964 355566655544 23457899999999999999
Q ss_pred HHHHHHHHHH
Q psy15732 534 LDWLSRQLIA 543 (550)
Q Consensus 534 f~~l~~~~~~ 543 (550)
|+||.+.+.+
T Consensus 190 ~~~l~~~i~~ 199 (217)
T 2f7s_A 190 VETLLDLIMK 199 (217)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 91
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.97 E-value=1.7e-09 Score=100.59 Aligned_cols=82 Identities=17% Similarity=0.166 Sum_probs=64.5
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++..+|.....|+..+.... ..++|++||+||+|+.. .+..+++.+... ...+.++++||++|.||+++
T Consensus 89 d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~g~gi~~l 161 (206)
T 2bcg_Y 89 DVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD------ANKMPFLETSALDSTNVEDA 161 (206)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH------HTTCCEEECCTTTCTTHHHH
T ss_pred ECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH------HcCCeEEEEeCCCCCCHHHH
Confidence 6778889999999998875543 35799999999999965 345566655443 23457999999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|+||.+.+...
T Consensus 162 ~~~l~~~i~~~ 172 (206)
T 2bcg_Y 162 FLTMARQIKES 172 (206)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987543
No 92
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.97 E-value=8.3e-10 Score=102.60 Aligned_cols=82 Identities=15% Similarity=0.090 Sum_probs=64.2
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++..+|+.+..|+..+.... ..++|++||+||+|+.. .++.+++.+... ...+.+++|||++|.||+++
T Consensus 107 D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~g~gv~~l 179 (201)
T 2ew1_A 107 DITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSE------AQDMYYLETSAKESDNVEKL 179 (201)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHH------HHTCCEEECCTTTCTTHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH------HcCCEEEEEeCCCCCCHHHH
Confidence 7788889998889988875442 35789999999999953 455666655443 23467999999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|+||++.+..+
T Consensus 180 ~~~l~~~i~~~ 190 (201)
T 2ew1_A 180 FLDLACRLISE 190 (201)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988543
No 93
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.97 E-value=5.1e-10 Score=99.82 Aligned_cols=82 Identities=13% Similarity=0.127 Sum_probs=65.0
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|.++..+|+....|+..++......++|++||+||+|+.. .+..++..+... ..++.++++||++|.||+++
T Consensus 83 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l 156 (167)
T 1kao_A 83 SLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE------EWGCPFMETSAKSKTMVDEL 156 (167)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH------HHTSCEEEECTTCHHHHHHH
T ss_pred eCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHH------HhCCCEEEecCCCCcCHHHH
Confidence 7888899999999998887665556899999999999853 345555554433 22457899999999999999
Q ss_pred HHHHHHHHHH
Q psy15732 534 LDWLSRQLIA 543 (550)
Q Consensus 534 f~~l~~~~~~ 543 (550)
|+||.+.+.+
T Consensus 157 ~~~l~~~~~~ 166 (167)
T 1kao_A 157 FAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 94
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.97 E-value=1.5e-09 Score=99.50 Aligned_cols=84 Identities=14% Similarity=0.196 Sum_probs=65.9
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC-CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG-CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGL 534 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~-~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f 534 (550)
|+++..+|.+...|+..+.......++|++||+||+|+.. ....+++.+.+. ..++.++++||++|.||+++|
T Consensus 101 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l~ 174 (190)
T 3con_A 101 AINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAK------SYGIPFIETSAKTRQGVEDAF 174 (190)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH------HHTCCEEECCTTTCTTHHHHH
T ss_pred ECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHH------HcCCeEEEEeCCCCCCHHHHH
Confidence 7778888998888888876554445799999999999965 445566655543 234579999999999999999
Q ss_pred HHHHHHHHHhc
Q psy15732 535 DWLSRQLIAAG 545 (550)
Q Consensus 535 ~~l~~~~~~~~ 545 (550)
+||.+.+.+..
T Consensus 175 ~~l~~~~~~~~ 185 (190)
T 3con_A 175 YTLVREIRQYR 185 (190)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99999887643
No 95
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.97 E-value=8.4e-10 Score=98.96 Aligned_cols=81 Identities=15% Similarity=0.170 Sum_probs=63.9
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++.++|+....|+..+.... ..++|++||+||+|+.. .++.+++.+.+. ..++.++++||++|.||+++
T Consensus 87 d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l 159 (170)
T 1z08_A 87 DITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAE------SVGAKHYHTSAKQNKGIEEL 159 (170)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHH------HTTCEEEEEBTTTTBSHHHH
T ss_pred ECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHHH------HcCCeEEEecCCCCCCHHHH
Confidence 7788889999999988775432 25689999999999954 456666666544 23468999999999999999
Q ss_pred HHHHHHHHHH
Q psy15732 534 LDWLSRQLIA 543 (550)
Q Consensus 534 f~~l~~~~~~ 543 (550)
|+||.+.+.+
T Consensus 160 ~~~l~~~~~~ 169 (170)
T 1z08_A 160 FLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9999988753
No 96
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.97 E-value=1.2e-09 Score=98.90 Aligned_cols=82 Identities=21% Similarity=0.213 Sum_probs=63.5
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++..+|+....|+..+..... .++|++||+||+|+.. .+..+++.+... ...+.++++||++|.||+++
T Consensus 92 d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l 164 (180)
T 2g6b_A 92 DVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAK------EYGLPFMETSAKTGLNVDLA 164 (180)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHH------HHTCCEEECCTTTCTTHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHHH------HcCCeEEEEeCCCCCCHHHH
Confidence 77888889888889888765432 6799999999999964 345555555443 23457999999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|+||.+.+.++
T Consensus 165 ~~~l~~~~~~~ 175 (180)
T 2g6b_A 165 FTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 99999988643
No 97
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.97 E-value=7e-10 Score=99.31 Aligned_cols=80 Identities=16% Similarity=0.186 Sum_probs=63.8
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|++++.+|+....|+..+.... ..++|++|++||+|+.. .++.+++.+.+. ...+.++++||++|.||+++
T Consensus 87 d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~g~gi~~l 159 (170)
T 1r2q_A 87 DITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYAD------DNSLLFMETSAKTSMNVNEI 159 (170)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH------HTTCEEEECCTTTCTTHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHHH------HcCCeEEEEeCCCCCCHHHH
Confidence 6778889999999998886553 36799999999999953 355666665543 34568999999999999999
Q ss_pred HHHHHHHHH
Q psy15732 534 LDWLSRQLI 542 (550)
Q Consensus 534 f~~l~~~~~ 542 (550)
|+||.+.+.
T Consensus 160 ~~~i~~~~~ 168 (170)
T 1r2q_A 160 FMAIAKKLP 168 (170)
T ss_dssp HHHHHHTSC
T ss_pred HHHHHHHHh
Confidence 999988653
No 98
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.97 E-value=1e-09 Score=101.13 Aligned_cols=82 Identities=16% Similarity=0.129 Sum_probs=61.7
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|++|.++|+.+..|+..+.......++|++||+||+||.. .+..++...... ...+.|++|||++|.||+++
T Consensus 89 dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~------~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 89 SITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAV------VFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHH------HTTCEEEECBTTTTBSHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHH------HhCCceEEeccccCCCHHHH
Confidence 6788899999888887775443335799999999999953 344444433222 22357899999999999999
Q ss_pred HHHHHHHHHH
Q psy15732 534 LDWLSRQLIA 543 (550)
Q Consensus 534 f~~l~~~~~~ 543 (550)
|+||++.+..
T Consensus 163 f~~l~~~~~~ 172 (192)
T 2cjw_A 163 FEGIVRQVRL 172 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998854
No 99
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.96 E-value=1.4e-09 Score=100.11 Aligned_cols=83 Identities=18% Similarity=0.085 Sum_probs=63.9
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++..+|+....|+..+... ...++|++||+||+|+.. .++.+++.+.... -..+.++++||++|.||+++
T Consensus 107 D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~~SA~~g~gi~~l 180 (192)
T 2il1_A 107 DITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFAQQ-----ITGMRFCEASAKDNFNVDEI 180 (192)
T ss_dssp ETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT-----STTCEEEECBTTTTBSHHHH
T ss_pred ECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHh-----cCCCeEEEEeCCCCCCHHHH
Confidence 778888898888887766433 345799999999999954 3555666554431 13568999999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|+||.+.+.++
T Consensus 181 ~~~l~~~i~~~ 191 (192)
T 2il1_A 181 FLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999988653
No 100
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.96 E-value=1.7e-09 Score=99.55 Aligned_cols=82 Identities=15% Similarity=0.142 Sum_probs=64.0
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++..+|+....|+..+.... ..++|++||+||+|+... +..++..+... ...+.++++||++|.||+++
T Consensus 97 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~g~gv~~l 169 (196)
T 3tkl_A 97 DVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFAD------SLGIPFLETSAKNATNVEQS 169 (196)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH------HTTCCEEEECTTTCTTHHHH
T ss_pred ECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHHH------HcCCcEEEEeCCCCCCHHHH
Confidence 7788899999999988875543 357999999999999643 44455544433 22357899999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|+||++.+.+.
T Consensus 170 ~~~l~~~i~~~ 180 (196)
T 3tkl_A 170 FMTMAAEIKKR 180 (196)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 101
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.96 E-value=1.7e-09 Score=97.77 Aligned_cols=83 Identities=13% Similarity=0.140 Sum_probs=64.4
Q ss_pred CccchhhHHHHHHHHHHHhhccC---cCCCeEEEEecCCCCC-CCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKE---LKDAALLLLANKQDIP-GCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLH 531 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~---~~~~pili~~NK~Dl~-~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~ 531 (550)
|.++..+|+....|+..+..... ..++|++||+||+|+. .....+++.+.+.. ...+.++++||++|.||+
T Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 162 (177)
T 1wms_A 88 SVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD-----NGDYPYFETSAKDATNVA 162 (177)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH-----TTCCCEEECCTTTCTTHH
T ss_pred ECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh-----cCCceEEEEeCCCCCCHH
Confidence 67778888888888877754322 2678999999999995 34566777665541 335679999999999999
Q ss_pred HHHHHHHHHHHH
Q psy15732 532 EGLDWLSRQLIA 543 (550)
Q Consensus 532 e~f~~l~~~~~~ 543 (550)
++|+||.+.+.+
T Consensus 163 ~l~~~l~~~~~~ 174 (177)
T 1wms_A 163 AAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
No 102
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.96 E-value=1.3e-09 Score=99.34 Aligned_cols=82 Identities=17% Similarity=0.172 Sum_probs=65.2
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCC--CCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIP--GCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~--~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++..+|.....|+..+.... ..++|++||+||+|+. ..++..++.+... ...+.++++||++|.||+++
T Consensus 91 d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l 163 (186)
T 2bme_A 91 DITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQ------ENELMFLETSALTGENVEEA 163 (186)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH------HTTCEEEECCTTTCTTHHHH
T ss_pred ECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHH------HcCCEEEEecCCCCCCHHHH
Confidence 7788889999889988775443 3679999999999995 3456666665544 34568999999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|+||++.+.++
T Consensus 164 ~~~l~~~~~~~ 174 (186)
T 2bme_A 164 FVQCARKILNK 174 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 103
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.95 E-value=1.6e-09 Score=97.05 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=63.0
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC-CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG-CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGL 534 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~-~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f 534 (550)
|+++..+|+....|+..+.... ..++|++||+||+|+.. ....+++.+... ..++.++++||++|.||+++|
T Consensus 84 d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gv~~l~ 156 (170)
T 1g16_A 84 DITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK------ELGIPFIESSAKNDDNVNEIF 156 (170)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHH------HHTCCEEECBTTTTBSHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHHH------HcCCeEEEEECCCCCCHHHHH
Confidence 5667788888888888876543 35789999999999954 345555555433 224579999999999999999
Q ss_pred HHHHHHHHHh
Q psy15732 535 DWLSRQLIAA 544 (550)
Q Consensus 535 ~~l~~~~~~~ 544 (550)
+||.+.+.++
T Consensus 157 ~~l~~~~~~~ 166 (170)
T 1g16_A 157 FTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 104
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.95 E-value=4.8e-10 Score=80.63 Aligned_cols=52 Identities=27% Similarity=0.503 Sum_probs=42.8
Q ss_pred cCCcceeccccccccccCCCCcEEec-CCCcchhhhHhhcccCCCccCCCCCCCccc
Q psy15732 62 LELALECRVCEDIFLTQGDKVPRLLH-CGHTVCLACLLRLPIKDDTITCPFDRQPTP 117 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~~~P~~l~-CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~ 117 (550)
+++...|+||++.|...+. ++.++ |||.||..|+..|+. ....||.||..+.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~--~~~~~~C~H~f~~~Ci~~w~~--~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEE--ARFLPRCGHGFHAECVDMWLG--SHSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSC--CEECSSSCCEECTTHHHHTTT--TCCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCc--eEECCCCCCcccHHHHHHHHH--cCCcCcCCCCEeE
Confidence 4567899999999985423 77886 999999999999987 4567999998764
No 105
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.95 E-value=1.8e-09 Score=98.92 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=64.2
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++..+|+....|+..+.... ..++|++||+||+|+.. .++.+++.+... ..++.++++||++|.||+++
T Consensus 103 d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~g~gi~~l 175 (189)
T 2gf9_A 103 DIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLAD------DLGFEFFEASAKENINVKQV 175 (189)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH------HHTCEEEECBTTTTBSHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHHH------HcCCeEEEEECCCCCCHHHH
Confidence 6778889999889988875542 45799999999999954 345555555443 23458999999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|+||.+.+.++
T Consensus 176 ~~~l~~~i~~~ 186 (189)
T 2gf9_A 176 FERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 106
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.95 E-value=8.7e-10 Score=101.34 Aligned_cols=84 Identities=13% Similarity=0.146 Sum_probs=64.6
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|.++.++|+....|+..+... ...++|++||+||+|+.. ....+++..... ..++.++++||++|.||+++
T Consensus 104 d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l 176 (191)
T 3dz8_A 104 DITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQLLAE------QLGFDFFEASAKENISVRQA 176 (191)
T ss_dssp ETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH------HHTCEEEECBTTTTBSHHHH
T ss_pred ECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHH------HcCCeEEEEECCCCCCHHHH
Confidence 567788888888888887553 346799999999999954 345555554443 23458999999999999999
Q ss_pred HHHHHHHHHHhcC
Q psy15732 534 LDWLSRQLIAAGV 546 (550)
Q Consensus 534 f~~l~~~~~~~~~ 546 (550)
|+||.+.+.++.+
T Consensus 177 ~~~l~~~i~~~~~ 189 (191)
T 3dz8_A 177 FERLVDAICDKMS 189 (191)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcc
Confidence 9999999876543
No 107
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.95 E-value=1.5e-09 Score=98.23 Aligned_cols=81 Identities=16% Similarity=0.186 Sum_probs=63.8
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++..+|.....|+..+.... .++|++||+||+|+.. .....+...... ...+.++++||++|.||+++
T Consensus 90 d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l 161 (181)
T 3tw8_B 90 DVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFAG------QMGIQLFETSAKENVNVEEM 161 (181)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHH------HHTCCEEECBTTTTBSHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHHH------HcCCeEEEEECCCCCCHHHH
Confidence 6778899999999998886543 5799999999999954 344555554443 23457899999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|+||.+.+...
T Consensus 162 ~~~l~~~~~~~ 172 (181)
T 3tw8_B 162 FNCITELVLRA 172 (181)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 108
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.94 E-value=7.1e-10 Score=101.67 Aligned_cols=82 Identities=15% Similarity=0.043 Sum_probs=64.8
Q ss_pred CccchhhHHHHHHHHHHHhhccC--cCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecc-cCCCCH
Q psy15732 456 DSADKERLPEALAELTKLIAEKE--LKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNA-QSGEGL 530 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~--~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA-~~g~gi 530 (550)
|+++.++|+++..|+..+..... ..++|++||+||+|+.. .++.+++.+... ..++.+++||| ++|.||
T Consensus 100 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~e~Sa~~~g~gv 173 (187)
T 3c5c_A 100 SVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAG------RFGCLFFEVSACLDFEHV 173 (187)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHH------HHTCEEEECCSSSCSHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHH------HcCCcEEEEeecCccccH
Confidence 77889999999999988865421 25799999999999953 456666665544 23458999999 899999
Q ss_pred HHHHHHHHHHHHH
Q psy15732 531 HEGLDWLSRQLIA 543 (550)
Q Consensus 531 ~e~f~~l~~~~~~ 543 (550)
+++|+||++.+.+
T Consensus 174 ~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 174 QHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998754
No 109
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.94 E-value=2.1e-09 Score=99.65 Aligned_cols=82 Identities=16% Similarity=0.187 Sum_probs=64.0
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++..+|+....|+..+... ...++|++||+||+|+.. .+..+++.+... ..++.++++||++|.||+++
T Consensus 89 d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l 161 (203)
T 1zbd_A 89 DITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLAD------HLGFEFFEASAKDNINVKQT 161 (203)
T ss_dssp ETTCHHHHHHHHHHHHHHHHH-SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHH------HHTCEEEECBTTTTBSSHHH
T ss_pred ECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCcccccCHHHHHHHHH------HCCCeEEEEECCCCCCHHHH
Confidence 778889999999999887544 245789999999999965 345555555443 22358999999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|+||.+.+..+
T Consensus 162 ~~~l~~~i~~~ 172 (203)
T 1zbd_A 162 FERLVDVICEK 172 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987543
No 110
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.93 E-value=2.3e-09 Score=97.13 Aligned_cols=84 Identities=11% Similarity=0.114 Sum_probs=64.0
Q ss_pred CccchhhHHHHHHHHHHHhhccC---cCCCeEEEEecCCCCCC---CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCC
Q psy15732 456 DSADKERLPEALAELTKLIAEKE---LKDAALLLLANKQDIPG---CETVESITEAFDLYKLCCGRSWHIQACNAQSGEG 529 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~---~~~~pili~~NK~Dl~~---~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~g 529 (550)
|+++..+|+....|+..+..... ..++|++||+||+|+.. .+..+++.+.... ...+.++++||++|.|
T Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~-----~~~~~~~~~Sa~~~~g 164 (182)
T 1ky3_A 90 DVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS-----LGDIPLFLTSAKNAIN 164 (182)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH-----TTSCCEEEEBTTTTBS
T ss_pred ECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHh-----cCCCeEEEEecCCCCC
Confidence 66778888888888887765432 26789999999999943 2456666554441 2356799999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy15732 530 LHEGLDWLSRQLIAA 544 (550)
Q Consensus 530 i~e~f~~l~~~~~~~ 544 (550)
|+++|+||.+.+.+.
T Consensus 165 i~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 165 VDTAFEEIARSALQQ 179 (182)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988653
No 111
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.93 E-value=8.6e-10 Score=98.61 Aligned_cols=80 Identities=18% Similarity=0.222 Sum_probs=64.0
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|.++.++|+....|+..+.... .++|++||+||+|+.. .+..+++.+.+. ..++.++++||++|.||+++
T Consensus 86 d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~l 157 (168)
T 1z2a_A 86 STTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAK------RLKLRFYRTSVKEDLNVSEV 157 (168)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHH------HHTCEEEECBTTTTBSSHHH
T ss_pred ECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHH------HcCCeEEEEecCCCCCHHHH
Confidence 6777888998889998886553 6789999999999954 455666665544 23458999999999999999
Q ss_pred HHHHHHHHHH
Q psy15732 534 LDWLSRQLIA 543 (550)
Q Consensus 534 f~~l~~~~~~ 543 (550)
|+||.+.+.+
T Consensus 158 ~~~l~~~~~~ 167 (168)
T 1z2a_A 158 FKYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9999988753
No 112
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.93 E-value=1.9e-09 Score=99.05 Aligned_cols=82 Identities=12% Similarity=0.130 Sum_probs=65.3
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++..+|.....|+..+.... ..++|++||+||+|+.. .+..+++...+. ...+.++++||++|.||+++
T Consensus 106 D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l 178 (193)
T 2oil_A 106 DLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFAE------NNGLLFLETSALDSTNVELA 178 (193)
T ss_dssp ETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH------HTTCEEEEECTTTCTTHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHHH------HcCCEEEEEeCCCCCCHHHH
Confidence 6778889999999998886543 36799999999999954 345666665543 33568999999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|+||.+.+.++
T Consensus 179 ~~~l~~~i~~~ 189 (193)
T 2oil_A 179 FETVLKEIFAK 189 (193)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 113
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.93 E-value=1e-09 Score=101.68 Aligned_cols=81 Identities=15% Similarity=0.131 Sum_probs=60.1
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCC--------CCCCHHHHHHhcCCCcccCCCcEEEEEecccCC
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIP--------GCETVESITEAFDLYKLCCGRSWHIQACNAQSG 527 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~--------~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g 527 (550)
|+++..+|+....|+..+... ...++|++||+||+|+. ..+..++..+... ..++.++++||++|
T Consensus 109 d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~------~~~~~~~~~SA~~g 181 (199)
T 2p5s_A 109 DVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAM------TYGALFCETSAKDG 181 (199)
T ss_dssp ETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHH------HHTCEEEECCTTTC
T ss_pred ECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHHHH------HcCCeEEEeeCCCC
Confidence 677888898888888877433 23578999999999994 2344444444333 33568999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy15732 528 EGLHEGLDWLSRQLIA 543 (550)
Q Consensus 528 ~gi~e~f~~l~~~~~~ 543 (550)
.||+++|+||++.+.+
T Consensus 182 ~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 182 SNIVEAVLHLAREVKK 197 (199)
T ss_dssp TTHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998854
No 114
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.92 E-value=1.8e-10 Score=85.74 Aligned_cols=51 Identities=25% Similarity=0.535 Sum_probs=42.6
Q ss_pred CcceeccccccccccCC-----CCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 64 LALECRVCEDIFLTQGD-----KVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~-----~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
+.+.|+||++.|. + +.++.++|||.||..|+..|+.. ...||.||..+...
T Consensus 2 ~~~~C~IC~~~~~---~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYS---EIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHH---HHHHTTCCEEEETTSCEEEHHHHHHHHHH--CSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhh---CccccCCCEEeCCCCCchhHHHHHHHHHc--CCCCCCCCccCCcc
Confidence 4679999999998 5 12388899999999999999873 56899999998764
No 115
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.92 E-value=1.3e-09 Score=100.36 Aligned_cols=83 Identities=10% Similarity=0.015 Sum_probs=63.1
Q ss_pred CccchhhHHHH-HHHHHHHhhccCcCCCeEEEEecCCCCCC----CCCHHHHHHhcCCCcccCCCcEE-EEEecccCCCC
Q psy15732 456 DSADKERLPEA-LAELTKLIAEKELKDAALLLLANKQDIPG----CETVESITEAFDLYKLCCGRSWH-IQACNAQSGEG 529 (550)
Q Consensus 456 D~~d~~~~~~~-~~~l~~~~~~~~~~~~pili~~NK~Dl~~----~~~~~~i~~~~~l~~~~~~~~~~-~~~~SA~~g~g 529 (550)
|+++.++|.++ ..|+..+... ..++|++||+||+|+.. .+..+++.+.... .++. ++++||++|.|
T Consensus 103 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~g 174 (194)
T 3reg_A 103 AVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQK------LGCVAYIEASSVAKIG 174 (194)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHH------HTCSCEEECBTTTTBS
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHh------cCCCEEEEeecCCCCC
Confidence 78889999987 5666665433 36799999999999963 3566666655542 2233 89999999999
Q ss_pred HHHHHHHHHHHHHHhcC
Q psy15732 530 LHEGLDWLSRQLIAAGV 546 (550)
Q Consensus 530 i~e~f~~l~~~~~~~~~ 546 (550)
|+++|+||.+.+..+++
T Consensus 175 i~~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 175 LNEVFEKSVDCIFSNKP 191 (194)
T ss_dssp HHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999876543
No 116
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.92 E-value=9.5e-10 Score=98.46 Aligned_cols=80 Identities=16% Similarity=0.147 Sum_probs=62.4
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC-----CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG-----CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGL 530 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~-----~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi 530 (550)
|++++.+|.+...|+..+.... ..++|++|++||+|+.. .+..++..+... ..++.++++||++|.||
T Consensus 84 d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~gi 156 (170)
T 1ek0_A 84 DVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAE------EKGLLFFETSAKTGENV 156 (170)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHH------HHTCEEEECCTTTCTTH
T ss_pred ecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHH------HcCCEEEEEeCCCCCCH
Confidence 7788899999999998886553 36799999999999953 344455444333 23468999999999999
Q ss_pred HHHHHHHHHHHH
Q psy15732 531 HEGLDWLSRQLI 542 (550)
Q Consensus 531 ~e~f~~l~~~~~ 542 (550)
+++|+||.+.+.
T Consensus 157 ~~l~~~l~~~i~ 168 (170)
T 1ek0_A 157 NDVFLGIGEKIP 168 (170)
T ss_dssp HHHHHHHHTTSC
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
No 117
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.92 E-value=4.2e-09 Score=97.31 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=65.7
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCC-CCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIP-GCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGL 534 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~-~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f 534 (550)
|++++.+|++...|+..+.... ++|++||+||+|+. .....+++.+.+. ...+.++++||++|.||+++|
T Consensus 125 D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~l~ 195 (208)
T 3clv_A 125 DISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDKNKFQVDILEVQKYAQ------DNNLLFIQTSAKTGTNIKNIF 195 (208)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTCC-CCSCHHHHHHHHH------HTTCEEEEECTTTCTTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCcccccCCHHHHHHHHH------HcCCcEEEEecCCCCCHHHHH
Confidence 6788889999999998886543 38999999999953 3456777777665 345689999999999999999
Q ss_pred HHHHHHHHHh
Q psy15732 535 DWLSRQLIAA 544 (550)
Q Consensus 535 ~~l~~~~~~~ 544 (550)
+||.+.+.++
T Consensus 196 ~~l~~~~~~~ 205 (208)
T 3clv_A 196 YMLAEEIYKN 205 (208)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988765
No 118
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.92 E-value=2.7e-10 Score=102.79 Aligned_cols=69 Identities=23% Similarity=0.342 Sum_probs=55.4
Q ss_pred hhccCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHHHH
Q psy15732 59 ILILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELIEK 138 (550)
Q Consensus 59 ~~~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~~ 138 (550)
+..+.+.+.|+||++.|. + |++++|||+||..|+..|+... ...||.||..+... .+.+|..+.+++..
T Consensus 12 ~~~~~~~~~C~IC~~~~~---~--pv~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~-----~~~~~~~~~~~i~~ 80 (170)
T 3hcs_A 12 DPPLESKYECPICLMALR---E--AVQTPCGHRFCKACIIKSIRDA-GHKCPVDNEILLEN-----QLFPDNFAKREILS 80 (170)
T ss_dssp SSCCCGGGBCTTTCSBCS---S--EEECTTSCEEEHHHHHHHHHHH-CSBCTTTCCBCCGG-----GCEECHHHHHHHHT
T ss_pred ccCCCCCCCCCCCChhhc---C--cEECCCCCHHHHHHHHHHHHhC-CCCCCCCccCcchh-----hhhhhHHHHHHHhh
Confidence 345778999999999999 9 9999999999999999998632 23799999998764 25566666666654
No 119
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.91 E-value=2.2e-09 Score=101.36 Aligned_cols=81 Identities=15% Similarity=0.150 Sum_probs=61.9
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++..+|+.+..|+..+.... ..++|++||+||+|+.. .++.+++.+.+. ...+.++++||++|.||+++
T Consensus 94 D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l 166 (223)
T 3cpj_B 94 DISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQ------ENQLLFTETSALNSENVDKA 166 (223)
T ss_dssp C-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHH------HTTCEEEECCCC-CCCHHHH
T ss_pred eCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHH------HcCCEEEEEeCCCCCCHHHH
Confidence 6788889999999998886543 35789999999999954 456666665543 33468999999999999999
Q ss_pred HHHHHHHHHH
Q psy15732 534 LDWLSRQLIA 543 (550)
Q Consensus 534 f~~l~~~~~~ 543 (550)
|+||++.+..
T Consensus 167 ~~~l~~~i~~ 176 (223)
T 3cpj_B 167 FEELINTIYQ 176 (223)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 9999998854
No 120
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.91 E-value=6.3e-10 Score=86.38 Aligned_cols=54 Identities=24% Similarity=0.467 Sum_probs=43.5
Q ss_pred cCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 62 LELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
......|+||++.|..... .+.++|||.||..|+..|+. ....||.||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~--~~~~~C~H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGES--VRQLPCNHLFHDSCIVPWLE--QHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSC--EEECTTSCEEETTTTHHHHT--TTCSCTTTCCCCCCS
T ss_pred CCCCCCCeeCCccccCCCC--EEEeCCCCeecHHHHHHHHH--cCCcCcCcCCccCCc
Confidence 4567899999999982211 36679999999999999987 346899999998764
No 121
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.91 E-value=2.6e-09 Score=98.25 Aligned_cols=79 Identities=14% Similarity=0.141 Sum_probs=59.5
Q ss_pred CccchhhHHHHH-HHHHHHhhccCcCCCeEEEEecCCCCCCC--------------CCHHHHHHhcCCCcccCCCc-EEE
Q psy15732 456 DSADKERLPEAL-AELTKLIAEKELKDAALLLLANKQDIPGC--------------ETVESITEAFDLYKLCCGRS-WHI 519 (550)
Q Consensus 456 D~~d~~~~~~~~-~~l~~~~~~~~~~~~pili~~NK~Dl~~~--------------~~~~~i~~~~~l~~~~~~~~-~~~ 519 (550)
|++++++|.++. .|+..+... ..++|++||+||+|+... ++.++..+... ..+ +.+
T Consensus 98 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~~~~~~ 169 (194)
T 2atx_A 98 SVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAK------EIGACCY 169 (194)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHH------HHTCSCE
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHH------HcCCcEE
Confidence 778889999887 687777544 247999999999999653 34444443332 112 378
Q ss_pred EEecccCCCCHHHHHHHHHHHHH
Q psy15732 520 QACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 520 ~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
++|||++|.||+++|+||++.+.
T Consensus 170 ~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 170 VECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999998774
No 122
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.91 E-value=1.4e-09 Score=98.37 Aligned_cols=83 Identities=12% Similarity=0.135 Sum_probs=61.4
Q ss_pred CccchhhHHHHHHHHHHHhhcc-CcCCCe-EEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHH
Q psy15732 456 DSADKERLPEALAELTKLIAEK-ELKDAA-LLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLH 531 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~-~~~~~p-ili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~ 531 (550)
|++++++|+....|+..+.... ...+.| ++||+||+|+.+ .++.+++.+... ..++.++++||++|.||+
T Consensus 88 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~ 161 (178)
T 2hxs_A 88 DITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQ------ENGFSSHFVSAKTGDSVF 161 (178)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHH------HHTCEEEEECTTTCTTHH
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHH------HcCCcEEEEeCCCCCCHH
Confidence 6677888888888887775421 112345 899999999964 355666655443 234689999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy15732 532 EGLDWLSRQLIAA 544 (550)
Q Consensus 532 e~f~~l~~~~~~~ 544 (550)
++|+||.+.+.+.
T Consensus 162 ~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 162 LCFQKVAAEILGI 174 (178)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988654
No 123
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.91 E-value=1e-09 Score=103.02 Aligned_cols=81 Identities=15% Similarity=0.028 Sum_probs=63.6
Q ss_pred CccchhhHHH-HHHHHHHHhhccCcCCCeEEEEecCCCCCC--------------CCCHHHHHHhcCCCcccCCCcE-EE
Q psy15732 456 DSADKERLPE-ALAELTKLIAEKELKDAALLLLANKQDIPG--------------CETVESITEAFDLYKLCCGRSW-HI 519 (550)
Q Consensus 456 D~~d~~~~~~-~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--------------~~~~~~i~~~~~l~~~~~~~~~-~~ 519 (550)
|+++.++|.+ ...|+..+... ..++|++||+||+||.. .++.+++.+... ..++ .|
T Consensus 107 d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~~~~~~ 178 (214)
T 3q3j_B 107 DISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAK------QLGAEIY 178 (214)
T ss_dssp ETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH------HHTCSEE
T ss_pred ECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHH------HcCCCEE
Confidence 7888999998 57888777544 25799999999999964 356666665544 3345 89
Q ss_pred EEecccCCCC-HHHHHHHHHHHHHHh
Q psy15732 520 QACNAQSGEG-LHEGLDWLSRQLIAA 544 (550)
Q Consensus 520 ~~~SA~~g~g-i~e~f~~l~~~~~~~ 544 (550)
++|||++|.| |+++|+||++.+...
T Consensus 179 ~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 179 LEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp EECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred EEeccCCCcccHHHHHHHHHHHHhcc
Confidence 9999999998 999999999988654
No 124
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.91 E-value=1.3e-09 Score=110.26 Aligned_cols=84 Identities=14% Similarity=0.222 Sum_probs=66.3
Q ss_pred hhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCC-----------------CC-CCHHHHHHhc-----CCCcccCCCc
Q psy15732 460 KERLPEALAELTKLIAEKELKDAALLLLANKQDIP-----------------GC-ETVESITEAF-----DLYKLCCGRS 516 (550)
Q Consensus 460 ~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~-----------------~~-~~~~~i~~~~-----~l~~~~~~~~ 516 (550)
..+|.++..|+..+..+....++|++|++||+||. +. .+.++..+++ .+......+.
T Consensus 247 ~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~ 326 (362)
T 1zcb_A 247 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRP 326 (362)
T ss_dssp EEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--C
T ss_pred ccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCc
Confidence 68999999999999887767889999999999984 12 5677776654 3322111457
Q ss_pred EEEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 517 WHIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 517 ~~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
+.+++|||++|+||+++|+|+.+.+..
T Consensus 327 ~~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 327 LYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp CEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 899999999999999999999998754
No 125
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.90 E-value=7.1e-10 Score=83.87 Aligned_cols=54 Identities=24% Similarity=0.421 Sum_probs=43.7
Q ss_pred cCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 62 LELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
......|+||++.|..... ++.++|||.||..|+..|+.. ...||.||..+...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGED--VRRLPCMHLFHQVCVDQWLIT--NKKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSC--EEECTTSCEEEHHHHHHHHHH--CSBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCc--EEEeCCCCHHHHHHHHHHHHc--CCCCcCcCccccCc
Confidence 3467899999999963224 788899999999999999873 34699999998753
No 126
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.90 E-value=3.7e-09 Score=99.20 Aligned_cols=82 Identities=16% Similarity=0.180 Sum_probs=64.2
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++..+|+....|+..+.... ..++|++||+||+|+.. .+..+++..... ...+.++++||++|.||+++
T Consensus 93 d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~g~gv~~l 165 (218)
T 4djt_A 93 DVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVLK------GKNYEYFEISAKTAHNFGLP 165 (218)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHTT------TCCCEEEEEBTTTTBTTTHH
T ss_pred eCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH------HcCCcEEEEecCCCCCHHHH
Confidence 7788888888888888775443 34589999999999965 345556655554 45668999999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|+||++.+...
T Consensus 166 ~~~l~~~~~~~ 176 (218)
T 4djt_A 166 FLHLARIFTGR 176 (218)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhcc
Confidence 99999998654
No 127
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.89 E-value=3.3e-09 Score=98.53 Aligned_cols=83 Identities=8% Similarity=0.088 Sum_probs=63.1
Q ss_pred CccchhhHHHHHHHHHHHhhccC---cCCCeEEEEecCCCCCC-CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKE---LKDAALLLLANKQDIPG-CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLH 531 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~---~~~~pili~~NK~Dl~~-~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~ 531 (550)
|+++..+|.....|+..+..... ..++|++||+||+|+.. ....+++.+.... ...+.++++||++|.||+
T Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~ 163 (207)
T 1vg8_A 89 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS-----KNNIPYFETSAKEAINVE 163 (207)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH-----TTSCCEEECBTTTTBSHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHh-----cCCceEEEEeCCCCCCHH
Confidence 67778888888888877764421 24689999999999964 3455666555431 345679999999999999
Q ss_pred HHHHHHHHHHHH
Q psy15732 532 EGLDWLSRQLIA 543 (550)
Q Consensus 532 e~f~~l~~~~~~ 543 (550)
++|+||++.+.+
T Consensus 164 ~l~~~l~~~~~~ 175 (207)
T 1vg8_A 164 QAFQTIARNALK 175 (207)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 128
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.89 E-value=2.9e-10 Score=98.21 Aligned_cols=50 Identities=26% Similarity=0.514 Sum_probs=44.1
Q ss_pred CCcceeccccccccccCCCCc-------EEecCCCcchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 63 ELALECRVCEDIFLTQGDKVP-------RLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P-------~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
.+.+.|+||++.|. + | ++++|||+||..|+..|+. ....||.||+.+...
T Consensus 5 ~~~~~C~IC~~~~~---~--~~~~~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYS---E--IVQNGRLIVSTECGHVFCSQCLRDSLK--NANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHH---H--HHHTTCCEEEETTCCEEEHHHHHHHHT--TCSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhh---C--ccccccCeEecCCCChhhHHHHHHHHH--hCCCCCCCCCcCccc
Confidence 46799999999999 7 7 9999999999999999987 445899999998764
No 129
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=98.88 E-value=3.7e-12 Score=100.60 Aligned_cols=76 Identities=20% Similarity=0.362 Sum_probs=61.5
Q ss_pred ccCCcccccCCCC-CCCCCCCCCCcccccceeecccccCCccccccccccccccccccCCCCcccHHHHHHHHHHHHHHH
Q psy15732 203 TLQKHRRIPLSEK-PREKPFCSSHPTNIAEFICLEEHCQTSAQYPPLMCFICKDYGRHKTHKHALVEIEAENLRSYVKNA 281 (550)
Q Consensus 203 ~~~~H~~~~~~~~-~~~~~~C~~H~~~~l~~fC~~~~C~~~~~c~~~iC~~C~~~~~H~~H~~~~l~~a~~~~~~~l~~~ 281 (550)
.|++|+++++... ......|+.|+.+++++||.+|+ .+||..|..++.|++|.+.++++|++.++++|+..
T Consensus 1 ~~~~H~l~~p~~~~~~~~~~C~~H~~e~l~lfC~~d~--------~~iC~~C~~~~~H~~H~~~~l~ea~~~~k~~L~~~ 72 (84)
T 2dja_A 1 GSSGSSGVEPVPDTHLRGITCLDHENEKVNMYCVSDD--------QLICALCKLVGRHRDHQVASLNDRFEKLKQTLEMN 72 (84)
T ss_dssp CCCCCCCCCCCCCCCSSCCCCSSCSSSCCCEEETTTT--------EEECHHHHHTSTTTTCCBCCCCSSCCCCCCCCCCC
T ss_pred CCCCCcccCCCCCCCCCCCcCcCcCCccccEEcCCCC--------ceEcccCcCCCCCCCCCccCHHHHHHHHHHHHHHH
Confidence 3788999988762 34567899997559999999854 99999999888999999999999988877776665
Q ss_pred HHHHH
Q psy15732 282 SSNVQ 286 (550)
Q Consensus 282 l~~l~ 286 (550)
+..++
T Consensus 73 l~~L~ 77 (84)
T 2dja_A 73 LTNLV 77 (84)
T ss_dssp CCCCC
T ss_pred HHHHH
Confidence 55443
No 130
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.88 E-value=2.6e-09 Score=97.88 Aligned_cols=82 Identities=15% Similarity=0.096 Sum_probs=61.5
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCC---CCH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSG---EGL 530 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g---~gi 530 (550)
|+++..+|.....|+..+.......++|++||+||+|+.. .++.+++.+... ..++.++++||++| +||
T Consensus 102 D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~~~~~i 175 (189)
T 1z06_A 102 DMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD------THSMPLFETSAKNPNDNDHV 175 (189)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH------HTTCCEEECCSSSGGGGSCH
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHH------HcCCEEEEEeCCcCCcccCH
Confidence 6788889999899998887665456799999999999954 345555555443 23457999999999 999
Q ss_pred HHHHHHHHHHHHH
Q psy15732 531 HEGLDWLSRQLIA 543 (550)
Q Consensus 531 ~e~f~~l~~~~~~ 543 (550)
+++|+||++.+.+
T Consensus 176 ~~l~~~l~~~i~~ 188 (189)
T 1z06_A 176 EAIFMTLAHKLKS 188 (189)
T ss_dssp HHHHHHHC-----
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987743
No 131
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.87 E-value=4.9e-09 Score=93.79 Aligned_cols=80 Identities=14% Similarity=0.077 Sum_probs=62.6
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++..+|+....|+..+... ...++|++||+||+|+.. .+..+++..... ...+.++++||++|.||+++
T Consensus 87 d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~l 159 (170)
T 1z0j_A 87 DITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYAD------SIHAIFVETSAKNAININEL 159 (170)
T ss_dssp ETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHH------HTTCEEEECBTTTTBSHHHH
T ss_pred ECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHHH------HcCCEEEEEeCCCCcCHHHH
Confidence 677888899988888887654 346799999999999954 345555555443 23468999999999999999
Q ss_pred HHHHHHHHH
Q psy15732 534 LDWLSRQLI 542 (550)
Q Consensus 534 f~~l~~~~~ 542 (550)
|+||.+.+.
T Consensus 160 ~~~i~~~i~ 168 (170)
T 1z0j_A 160 FIEISRRIP 168 (170)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHh
Confidence 999998753
No 132
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.87 E-value=1.2e-09 Score=102.91 Aligned_cols=81 Identities=17% Similarity=0.207 Sum_probs=62.3
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|+++..+|.....|+..+.... .++|++||+||+|+.+.....+..... ....+.+++|||++|.||+++|+
T Consensus 96 d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~gi~~l~~ 167 (221)
T 3gj0_A 96 DVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSIVFH------RKKNLQYYDISAKSNYNFEKPFL 167 (221)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGGGCCHH------HHHTCEEEECBGGGTBTTTHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHHHHHHH------HHcCCEEEEEeCCCCCCHHHHHH
Confidence 6778889999999998886543 579999999999997643322221111 13456899999999999999999
Q ss_pred HHHHHHHHh
Q psy15732 536 WLSRQLIAA 544 (550)
Q Consensus 536 ~l~~~~~~~ 544 (550)
||.+.+...
T Consensus 168 ~l~~~l~~~ 176 (221)
T 3gj0_A 168 WLARKLIGD 176 (221)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhC
Confidence 999998654
No 133
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=98.87 E-value=3.3e-10 Score=86.26 Aligned_cols=68 Identities=18% Similarity=0.311 Sum_probs=56.6
Q ss_pred cccCCcccccCCCCCCCCCCCCCCcccccceeecccccCCccccccccccccccccccCCCCcccHHHHHHHHHHHHHH
Q psy15732 202 RTLQKHRRIPLSEKPREKPFCSSHPTNIAEFICLEEHCQTSAQYPPLMCFICKDYGRHKTHKHALVEIEAENLRSYVKN 280 (550)
Q Consensus 202 ~~~~~H~~~~~~~~~~~~~~C~~H~~~~l~~fC~~~~C~~~~~c~~~iC~~C~~~~~H~~H~~~~l~~a~~~~~~~l~~ 280 (550)
..+++|+++.+... .....|+.|.+ ++++||.+|. .+||..|.. +.|++|.+.++++|++..+++|+.
T Consensus 2 ~~~~~H~L~~p~~~-~~~~~C~~H~e-~l~lfC~~d~--------~~iC~~C~~-~~H~~H~~~~l~ea~~~~k~~L~~ 69 (72)
T 2csv_A 2 SSGSSGQLLEPIRD-FEARKCPVHGK-TMELFCQTDQ--------TCICYLCMF-QEHKNHSTVTVEEAKAEKETESGP 69 (72)
T ss_dssp CCSCCCCCCCCSSS-SSCCBCTTTCC-BCCEEESSSC--------CEECHHHHH-TTTSSSCEEEHHHHHHHHSSCCCC
T ss_pred CCccCCcccCCccc-cccCcCcccCC-ceEEEeCCCC--------eEEccccCC-CCCCCCCEecHHHHHHHHHHHHHH
Confidence 35788999887643 45578999975 9999999854 999999998 899999999999999888766543
No 134
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.86 E-value=8.5e-10 Score=79.29 Aligned_cols=51 Identities=24% Similarity=0.514 Sum_probs=41.7
Q ss_pred CcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCccc
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTP 117 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~ 117 (550)
+...|+||++.|... +..++.++|||.||..|+..|+.. ...||.||..+.
T Consensus 4 ~~~~C~IC~~~~~~~-~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTS-RVVAHVLPCGHLLHRTCYEEMLKE--GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTT-TSCEEECTTSCEEETTHHHHHHHH--TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCC-CcCeEecCCCCcccHHHHHHHHHc--CCcCCCCCCcCC
Confidence 467899999999632 244788899999999999999874 378999998764
No 135
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.85 E-value=7.7e-10 Score=84.80 Aligned_cols=50 Identities=22% Similarity=0.499 Sum_probs=43.3
Q ss_pred hhhccCCcceeccccccccccCCCCcEEecCCCc-chhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 58 RILILELALECRVCEDIFLTQGDKVPRLLHCGHT-VCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 58 ~~~~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~-fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
....+.+.+.|+||++.+. + |++++|||+ ||..|+..| ..||.||..+..
T Consensus 17 ~~~~~~~~~~C~iC~~~~~---~--~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 17 QLRRLQEEKLCKICMDRNI---A--IVFVPCGHLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHHHHTBCTTTSSSBC---C--EEEETTCCBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred HHhcCccCCCCCCCCCCCC---C--EEEcCCCChhHHHHhhhcC------ccCCCcCcCccC
Confidence 3445677899999999999 9 999999999 999999887 469999998753
No 136
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.85 E-value=5.6e-09 Score=96.62 Aligned_cols=82 Identities=12% Similarity=0.078 Sum_probs=61.0
Q ss_pred CccchhhHHHHH-HHHHHHhhccCcCCCeEEEEecCCCCCC--------------CCCHHHHHHhcCCCcccCCCcEEEE
Q psy15732 456 DSADKERLPEAL-AELTKLIAEKELKDAALLLLANKQDIPG--------------CETVESITEAFDLYKLCCGRSWHIQ 520 (550)
Q Consensus 456 D~~d~~~~~~~~-~~l~~~~~~~~~~~~pili~~NK~Dl~~--------------~~~~~~i~~~~~l~~~~~~~~~~~~ 520 (550)
|++++++|.++. .|+..+.... .++|++||+||+|+.. .+..+++...... ...+.|+
T Consensus 100 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~ 172 (201)
T 2q3h_A 100 SVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEE-----IKAASYI 172 (201)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH-----HTCSEEE
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHh-----cCCcEEE
Confidence 778889999987 6877775442 4799999999999954 2344444443321 1123899
Q ss_pred EecccCCCCHHHHHHHHHHHHHHh
Q psy15732 521 ACNAQSGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 521 ~~SA~~g~gi~e~f~~l~~~~~~~ 544 (550)
+|||++|.||+++|+||.+.+.+.
T Consensus 173 ~~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 173 ECSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999988654
No 137
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.85 E-value=4.3e-09 Score=98.66 Aligned_cols=81 Identities=11% Similarity=0.106 Sum_probs=60.0
Q ss_pred CccchhhHHHHH-HHHHHHhhccCcCCCeEEEEecCCCCCCC--------------CCHHHHHHhcCCCcccCCCc-EEE
Q psy15732 456 DSADKERLPEAL-AELTKLIAEKELKDAALLLLANKQDIPGC--------------ETVESITEAFDLYKLCCGRS-WHI 519 (550)
Q Consensus 456 D~~d~~~~~~~~-~~l~~~~~~~~~~~~pili~~NK~Dl~~~--------------~~~~~i~~~~~l~~~~~~~~-~~~ 519 (550)
|+++..+|+.+. .|+..+... ..++|++||+||+|+... ++.++..+... ..+ +.+
T Consensus 114 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~~~~~~ 185 (214)
T 2j1l_A 114 DVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMAR------SVGAVAY 185 (214)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHH------HTTCSEE
T ss_pred ECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHH------hcCCCEE
Confidence 677889999886 677776433 257999999999999653 23333333322 123 389
Q ss_pred EEecccCCCCHHHHHHHHHHHHHHh
Q psy15732 520 QACNAQSGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 520 ~~~SA~~g~gi~e~f~~l~~~~~~~ 544 (550)
++|||++|.||+++|+||++.+.+.
T Consensus 186 ~~~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 186 LECSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999988654
No 138
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.83 E-value=5.6e-09 Score=97.44 Aligned_cols=82 Identities=16% Similarity=0.157 Sum_probs=62.5
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC-CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG-CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGL 534 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~-~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f 534 (550)
|+++..+|+....|+..+.... ..++|++||+||+|+.. ....+++.+... ..++.++++||++|.||+++|
T Consensus 101 d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l~ 173 (213)
T 3cph_A 101 DVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK------ELGIPFIESSAKNDDNVNEIF 173 (213)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHHH------HHTCCEEECBTTTTBSSHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHHH------HcCCEEEEEeCCCCCCHHHHH
Confidence 6777888988888888876543 35789999999999943 345555554433 223578999999999999999
Q ss_pred HHHHHHHHHh
Q psy15732 535 DWLSRQLIAA 544 (550)
Q Consensus 535 ~~l~~~~~~~ 544 (550)
+||.+.+...
T Consensus 174 ~~l~~~~~~~ 183 (213)
T 3cph_A 174 FTLAKLIQEK 183 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988653
No 139
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.83 E-value=1.4e-09 Score=86.97 Aligned_cols=52 Identities=21% Similarity=0.356 Sum_probs=43.0
Q ss_pred CCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
.+...|+||++.|...+. ++.++|||.||..|+..|+. ....||.||..+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~--~~~l~C~H~Fh~~Ci~~wl~--~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDV--ATELPCHHYFHKPCVSIWLQ--KSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCE--EEEETTTEEEEHHHHHHHHT--TTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCc--EEecCCCChHHHHHHHHHHH--cCCcCcCcCccCCC
Confidence 467899999999985323 67789999999999999987 44579999998754
No 140
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.83 E-value=9e-10 Score=83.02 Aligned_cols=47 Identities=28% Similarity=0.576 Sum_probs=40.8
Q ss_pred CcceeccccccccccCCCCc-EEecCCCcchhhhHhhcccCCCccCCCCCCCccc
Q psy15732 64 LALECRVCEDIFLTQGDKVP-RLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTP 117 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P-~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~ 117 (550)
....|+||++.+. + | +.++|||.||..|+..|+. ....||.||..+.
T Consensus 4 ~~~~C~IC~~~~~---~--~~~~~~C~H~fc~~Ci~~~~~--~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPS---N--YSMALPCLHAFCYVCITRWIR--QNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCC---S--CEEETTTTEEESTTHHHHHHH--HSCSTTTTCCCCC
T ss_pred CCCCCeeCCcccc---C--CcEecCCCCeeHHHHHHHHHh--CcCcCcCCChhhH
Confidence 4678999999998 7 7 6779999999999999987 3468999998875
No 141
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.82 E-value=3.4e-09 Score=95.77 Aligned_cols=80 Identities=14% Similarity=0.168 Sum_probs=62.9
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|++++.+|+....|+..+.... ..++|++||+||+|+.. .+..++....+. ...+.++++||++|.||+++
T Consensus 95 d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~l 167 (179)
T 2y8e_A 95 DITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAK------ELNVMFIETSAKAGYNVKQL 167 (179)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHH------HHTCEEEEEBTTTTBSHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHH------HcCCeEEEEeCCCCCCHHHH
Confidence 6778889999999998886543 35799999999999953 345566555443 23468999999999999999
Q ss_pred HHHHHHHHH
Q psy15732 534 LDWLSRQLI 542 (550)
Q Consensus 534 f~~l~~~~~ 542 (550)
|+||.+.+.
T Consensus 168 ~~~l~~~~~ 176 (179)
T 2y8e_A 168 FRRVAAALP 176 (179)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHHHh
Confidence 999998664
No 142
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=1.3e-09 Score=83.82 Aligned_cols=52 Identities=25% Similarity=0.417 Sum_probs=42.4
Q ss_pred CCcceeccccccccccCC-CCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 63 ELALECRVCEDIFLTQGD-KVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~-~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
.+...|+||++.|. + ...+.++|||.||..|+..|+.. ...||.||..+...
T Consensus 21 ~~~~~C~IC~~~~~---~~~~~~~l~C~H~fh~~Ci~~w~~~--~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFE---SRQLLRVLPCNHEFHAKCVDKWLKA--NRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECC---BTCEEEEETTTEEEETTHHHHHHHH--CSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccC---CCCeEEEECCCCHhHHHHHHHHHHc--CCcCcCcCCcCCCC
Confidence 46789999999998 5 11277899999999999999873 45799999987653
No 143
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.81 E-value=1.5e-09 Score=104.77 Aligned_cols=89 Identities=11% Similarity=0.096 Sum_probs=62.2
Q ss_pred EEEEeeCCCCCccch--hhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEec
Q psy15732 446 RVVTLGLDSADSADK--ERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACN 523 (550)
Q Consensus 446 ~~~~~~~d~~D~~d~--~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~S 523 (550)
.++++.+| ++++ .+|+.+..|+..+.......++|++||+||+||......+++.+.... ...+.+++||
T Consensus 164 d~vilV~D---~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~e~S 235 (255)
T 3c5h_A 164 DGFLLGID---VSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALS-----KKNLQVVETS 235 (255)
T ss_dssp CEEEEEEE---CBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHT-----SSSCCEEECB
T ss_pred CEEEEEEE---CCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHh-----cCCCeEEEEE
Confidence 34444454 5566 788888889888865533357999999999999653223344333321 1356899999
Q ss_pred ccCCCCHHHHHHHHHHHHH
Q psy15732 524 AQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 524 A~~g~gi~e~f~~l~~~~~ 542 (550)
|++|.||+++|+||++.+.
T Consensus 236 Ak~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 236 ARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhc
Confidence 9999999999999998764
No 144
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.81 E-value=8.6e-09 Score=95.50 Aligned_cols=80 Identities=15% Similarity=0.184 Sum_probs=56.7
Q ss_pred CccchhhHHHH-HHHHHHHhhccCcCCCeEEEEecCCCCCCC--------------CCHHHHHHhcCCCcccCCCcEEEE
Q psy15732 456 DSADKERLPEA-LAELTKLIAEKELKDAALLLLANKQDIPGC--------------ETVESITEAFDLYKLCCGRSWHIQ 520 (550)
Q Consensus 456 D~~d~~~~~~~-~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--------------~~~~~i~~~~~l~~~~~~~~~~~~ 520 (550)
|+++.++|.+. ..|+..+... ..++|++||+||+|+... ++.++..+.... ...+.++
T Consensus 105 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~ 177 (201)
T 2gco_A 105 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANR-----ISAFGYL 177 (201)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHH-----TTCSEEE
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHh-----CCCcEEE
Confidence 67788899888 4666655432 257999999999999654 233333332221 1123799
Q ss_pred EecccCCCCHHHHHHHHHHHHH
Q psy15732 521 ACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 521 ~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
++||++|.||+++|+||.+.+.
T Consensus 178 ~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 178 ECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EeeCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999998764
No 145
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.80 E-value=9.1e-10 Score=101.97 Aligned_cols=81 Identities=15% Similarity=0.148 Sum_probs=53.6
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++..+|+.+..|+..+... ...++|++||+||+|+... +..+++.+... ...+.++++||++|.||+++
T Consensus 114 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~vSA~~g~gv~~l 186 (199)
T 3l0i_B 114 DVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFAD------SLGIPFLETSAKNATNVEQS 186 (199)
T ss_dssp -CCCSHHHHHHHHHHHHHHSC-C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHH------TTTCCBCCCCC---HHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHh-ccCCCCEEEEEECccCCccccCCHHHHHHHHH------HcCCeEEEEECCCCCCHHHH
Confidence 778889999999999888544 2357999999999999543 22122222111 23346888999999999999
Q ss_pred HHHHHHHHHH
Q psy15732 534 LDWLSRQLIA 543 (550)
Q Consensus 534 f~~l~~~~~~ 543 (550)
|+||++.+.+
T Consensus 187 ~~~l~~~l~~ 196 (199)
T 3l0i_B 187 FMTMAAEIKK 196 (199)
T ss_dssp HHHHTTTTTT
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 146
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.80 E-value=3.7e-09 Score=96.43 Aligned_cols=81 Identities=12% Similarity=0.062 Sum_probs=60.4
Q ss_pred CccchhhHHHH-HHHHHHHhhccCcCCCeEEEEecCCCCCC--------------CCCHHHHHHhcCCCcccCCCcEEEE
Q psy15732 456 DSADKERLPEA-LAELTKLIAEKELKDAALLLLANKQDIPG--------------CETVESITEAFDLYKLCCGRSWHIQ 520 (550)
Q Consensus 456 D~~d~~~~~~~-~~~l~~~~~~~~~~~~pili~~NK~Dl~~--------------~~~~~~i~~~~~l~~~~~~~~~~~~ 520 (550)
|++++++|+.+ ..|+..+... ..++|++||+||+|+.. .++.+++.+.... ...+.|+
T Consensus 87 d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~ 159 (184)
T 1m7b_A 87 DISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ-----IGAATYI 159 (184)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH-----HTCSEEE
T ss_pred ECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHH-----cCCcEEE
Confidence 77888999988 5777766433 25799999999999963 3455555544431 1125899
Q ss_pred Eeccc-CCCCHHHHHHHHHHHHHH
Q psy15732 521 ACNAQ-SGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 521 ~~SA~-~g~gi~e~f~~l~~~~~~ 543 (550)
+|||+ +|.||+++|++|++.+.+
T Consensus 160 e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 160 ECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp ECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred EeeecCCCcCHHHHHHHHHHHHhc
Confidence 99999 699999999999998764
No 147
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.79 E-value=4.8e-09 Score=96.71 Aligned_cols=82 Identities=15% Similarity=0.080 Sum_probs=60.5
Q ss_pred CccchhhHHHHHHHHHHHhhccC-cCCCeEEEEecCCCCCCC-CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKE-LKDAALLLLANKQDIPGC-ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~-~~~~pili~~NK~Dl~~~-~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++..+|++...|+..+..... ..++|++||+||+|+... ...+++..... ...+.++++||++|.||+++
T Consensus 88 d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l 161 (199)
T 2gf0_A 88 SVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQ------EWKCAFMETSAKMNYNVKEL 161 (199)
T ss_dssp ETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHH------HHTCEEEECBTTTTBSHHHH
T ss_pred ECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHH------HhCCeEEEEecCCCCCHHHH
Confidence 67788888887777765543221 346899999999999653 44555544333 23468999999999999999
Q ss_pred HHHHHHHHHH
Q psy15732 534 LDWLSRQLIA 543 (550)
Q Consensus 534 f~~l~~~~~~ 543 (550)
|+||.+.+..
T Consensus 162 ~~~l~~~~~~ 171 (199)
T 2gf0_A 162 FQELLTLETR 171 (199)
T ss_dssp HHHHHHHCSS
T ss_pred HHHHHHHHhh
Confidence 9999997743
No 148
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=1e-09 Score=83.26 Aligned_cols=51 Identities=27% Similarity=0.502 Sum_probs=43.8
Q ss_pred ccCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 61 ILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 61 ~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
.+.+.+.|+||++.+. + ++++|||.||..|+..|+. ....||.||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~---~---~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 11 QLTDEEECCICMDGRA---D---LILPCAHSFCQKCIDKWSD--RHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCCSSSCCSCC---S---EEETTTEEECHHHHHHSSC--CCSSCHHHHHCTTCC
T ss_pred cCCCCCCCeeCCcCcc---C---cccCCCCcccHHHHHHHHH--CcCcCCCcCCcccCC
Confidence 3467889999999998 5 8889999999999999987 567899999987653
No 149
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.78 E-value=4.6e-09 Score=97.67 Aligned_cols=79 Identities=13% Similarity=0.093 Sum_probs=57.0
Q ss_pred CccchhhHHHHH-HHHHHHhhccCcCCCeEEEEecCCCCCCCC--------------CHHHHHHhcCCCcccCCCcEEEE
Q psy15732 456 DSADKERLPEAL-AELTKLIAEKELKDAALLLLANKQDIPGCE--------------TVESITEAFDLYKLCCGRSWHIQ 520 (550)
Q Consensus 456 D~~d~~~~~~~~-~~l~~~~~~~~~~~~pili~~NK~Dl~~~~--------------~~~~i~~~~~l~~~~~~~~~~~~ 520 (550)
|+++..+|++.. .|+..+.... .++|++||+||+|+.... +.++....... .....++
T Consensus 110 d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~ 182 (204)
T 4gzl_A 110 SLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE-----IGAVKYL 182 (204)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH-----TTCSEEE
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHh-----cCCcEEE
Confidence 788899999987 6766664432 679999999999996542 22222222221 1124699
Q ss_pred EecccCCCCHHHHHHHHHHHH
Q psy15732 521 ACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 521 ~~SA~~g~gi~e~f~~l~~~~ 541 (550)
++||++|+||+++|+||.+.+
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 183 ECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp ECCTTTCTTHHHHHHHHHHTT
T ss_pred EeeCCCCCCHHHHHHHHHHHh
Confidence 999999999999999998754
No 150
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.78 E-value=7.2e-09 Score=94.24 Aligned_cols=80 Identities=13% Similarity=0.107 Sum_probs=58.5
Q ss_pred CccchhhHHHHH-HHHHHHhhccCcCCCeEEEEecCCCCCCC--------------CCHHHHHHhcCCCcccCCCc-EEE
Q psy15732 456 DSADKERLPEAL-AELTKLIAEKELKDAALLLLANKQDIPGC--------------ETVESITEAFDLYKLCCGRS-WHI 519 (550)
Q Consensus 456 D~~d~~~~~~~~-~~l~~~~~~~~~~~~pili~~NK~Dl~~~--------------~~~~~i~~~~~l~~~~~~~~-~~~ 519 (550)
|+++..+|.+.. .|+..+.... .++|++||+||+|+... ++.++..+... ..+ +.+
T Consensus 85 d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~~~~~~ 156 (186)
T 1mh1_A 85 SLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK------EIGAVKY 156 (186)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH------HTTCSEE
T ss_pred ECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHH------hcCCcEE
Confidence 678888999887 5777665432 47999999999999543 23333332222 122 489
Q ss_pred EEecccCCCCHHHHHHHHHHHHHH
Q psy15732 520 QACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 520 ~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
+++||++|.||+++|+||.+.+..
T Consensus 157 ~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 157 LECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHSC
T ss_pred EEecCCCccCHHHHHHHHHHHHhc
Confidence 999999999999999999998854
No 151
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.78 E-value=5.1e-09 Score=97.53 Aligned_cols=82 Identities=12% Similarity=0.060 Sum_probs=60.9
Q ss_pred CccchhhHHHH-HHHHHHHhhccCcCCCeEEEEecCCCCCC--------------CCCHHHHHHhcCCCcccCCCcEEEE
Q psy15732 456 DSADKERLPEA-LAELTKLIAEKELKDAALLLLANKQDIPG--------------CETVESITEAFDLYKLCCGRSWHIQ 520 (550)
Q Consensus 456 D~~d~~~~~~~-~~~l~~~~~~~~~~~~pili~~NK~Dl~~--------------~~~~~~i~~~~~l~~~~~~~~~~~~ 520 (550)
|+++.++|.++ ..|+..+... ..++|++||+||+|+.. .++.+++.+.... ...+.|+
T Consensus 108 D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~ 180 (205)
T 1gwn_A 108 DISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ-----IGAATYI 180 (205)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH-----HTCSEEE
T ss_pred ECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHH-----cCCCEEE
Confidence 78888999988 6777776443 25799999999999963 2455555444331 0125899
Q ss_pred Eeccc-CCCCHHHHHHHHHHHHHHh
Q psy15732 521 ACNAQ-SGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 521 ~~SA~-~g~gi~e~f~~l~~~~~~~ 544 (550)
+|||+ +|.||+++|++|.+.+.++
T Consensus 181 e~SAk~~~~gv~~lf~~l~~~~l~~ 205 (205)
T 1gwn_A 181 ECSALQSENSVRDIFHVATLACVNK 205 (205)
T ss_dssp ECCTTTCHHHHHHHHHHHHHHHHHC
T ss_pred EeeeccCCcCHHHHHHHHHHHHhhC
Confidence 99999 6899999999999987653
No 152
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.78 E-value=4.3e-09 Score=98.29 Aligned_cols=80 Identities=13% Similarity=0.113 Sum_probs=60.1
Q ss_pred CccchhhHHHHH-HHHHHHhhccCcCCCeEEEEecCCCCCCC----------CCHHHHHHhcCCCcccCCCc-EEEEEec
Q psy15732 456 DSADKERLPEAL-AELTKLIAEKELKDAALLLLANKQDIPGC----------ETVESITEAFDLYKLCCGRS-WHIQACN 523 (550)
Q Consensus 456 D~~d~~~~~~~~-~~l~~~~~~~~~~~~pili~~NK~Dl~~~----------~~~~~i~~~~~l~~~~~~~~-~~~~~~S 523 (550)
|++++++|+.+. .|+..+.... .++|++||+||+|+... ++.+++.+... ..+ +.+++||
T Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~------~~~~~~~~~~S 160 (212)
T 2j0v_A 89 SLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRK------QIGAAAYIECS 160 (212)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHH------HHTCSEEEECC
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHH------HcCCceEEEcc
Confidence 778889999887 6877775432 47999999999999543 23444444332 112 3789999
Q ss_pred ccCCCCHHHHHHHHHHHHHH
Q psy15732 524 AQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 524 A~~g~gi~e~f~~l~~~~~~ 543 (550)
|++|.||+++|+||++.+..
T Consensus 161 a~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 161 SKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999998753
No 153
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.78 E-value=1e-08 Score=95.43 Aligned_cols=82 Identities=15% Similarity=0.195 Sum_probs=57.5
Q ss_pred CccchhhHHHH-HHHHHHHhhccCcCCCeEEEEecCCCCCCC--------------CCHHHHHHhcCCCcccCCCcEEEE
Q psy15732 456 DSADKERLPEA-LAELTKLIAEKELKDAALLLLANKQDIPGC--------------ETVESITEAFDLYKLCCGRSWHIQ 520 (550)
Q Consensus 456 D~~d~~~~~~~-~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--------------~~~~~i~~~~~l~~~~~~~~~~~~ 520 (550)
|+++.++|.+. ..|+..+... ..++|++||+||+|+... ++.++..+.... ...+.++
T Consensus 105 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~ 177 (207)
T 2fv8_A 105 SVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVR-----IQAYDYL 177 (207)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHH-----TTCSEEE
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHh-----cCCCEEE
Confidence 67778889888 5666666432 257999999999999654 222222221110 1123899
Q ss_pred EecccCCCCHHHHHHHHHHHHHHh
Q psy15732 521 ACNAQSGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 521 ~~SA~~g~gi~e~f~~l~~~~~~~ 544 (550)
++||++|.||+++|+||.+.+.+.
T Consensus 178 ~~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 178 ECSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred EeeCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988654
No 154
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.77 E-value=2.4e-09 Score=107.88 Aligned_cols=86 Identities=17% Similarity=0.186 Sum_probs=62.7
Q ss_pred chhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC----CC-------------------HHHHHHhcC-----C--
Q psy15732 459 DKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC----ET-------------------VESITEAFD-----L-- 508 (550)
Q Consensus 459 d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~----~~-------------------~~~i~~~~~-----l-- 508 (550)
+.++|+++..|+..+..+....++|++|+|||+||... .+ .++..+++. +
T Consensus 228 ~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~ 307 (354)
T 2xtz_A 228 QKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYY 307 (354)
T ss_dssp TSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhh
Confidence 78999999999999988766688999999999998321 11 233333211 0
Q ss_pred -Cccc--CCCcEEEEEecccCCCCHHHHHHHHHHHHHHh
Q psy15732 509 -YKLC--CGRSWHIQACNAQSGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 509 -~~~~--~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~~ 544 (550)
.... ..+.+.+++|||++|+||+++|+|+++.+.+.
T Consensus 308 ~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~~ 346 (354)
T 2xtz_A 308 QNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRR 346 (354)
T ss_dssp HTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHHH
Confidence 0000 03467789999999999999999999987653
No 155
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.77 E-value=4.6e-09 Score=94.13 Aligned_cols=82 Identities=12% Similarity=0.068 Sum_probs=59.7
Q ss_pred CccchhhHHHHHHHHHHHhhcc-CcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEK-ELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHE 532 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~-~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e 532 (550)
|++++.+|+....|+..+.... ...++|++||+||+|+.. .+...+...... ..++.++++||++|.||++
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 83 SITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALAR------TWKCAFMETSAKLNHNVKE 156 (172)
T ss_dssp ETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHH------HHTCEEEECBTTTTBSHHH
T ss_pred ECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHH------HhCCeEEEecCCCCcCHHH
Confidence 7778888888888877665432 235789999999999954 344444444332 2346899999999999999
Q ss_pred HHHHHHHHHHH
Q psy15732 533 GLDWLSRQLIA 543 (550)
Q Consensus 533 ~f~~l~~~~~~ 543 (550)
+|+||.+.+.+
T Consensus 157 l~~~l~~~~~~ 167 (172)
T 2erx_A 157 LFQELLNLEKR 167 (172)
T ss_dssp HHHHHHHTCCS
T ss_pred HHHHHHHHHhh
Confidence 99999987644
No 156
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=1.9e-09 Score=82.66 Aligned_cols=53 Identities=25% Similarity=0.479 Sum_probs=41.8
Q ss_pred cCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 62 LELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
+.....|+||++.|..... .+.++|||.||..|+..|+.. ...||.||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~--~~~~~C~H~f~~~Ci~~~~~~--~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDE--LGICPCKHAFHRKCLIKWLEV--RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSC--EEEETTTEEEEHHHHHHHHHH--CSBCTTTCCBCSS
T ss_pred CCCCCCCcCCCcccCCCCc--EEEcCCCCEecHHHHHHHHHc--CCcCCCcCccccc
Confidence 4567899999999983211 344599999999999999873 3479999998764
No 157
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.75 E-value=9.5e-09 Score=101.94 Aligned_cols=88 Identities=16% Similarity=0.202 Sum_probs=70.9
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC------------------CCCHHHHHHhc-----CCCccc
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG------------------CETVESITEAF-----DLYKLC 512 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~------------------~~~~~~i~~~~-----~l~~~~ 512 (550)
|.++..+|.++..|+..+..++...++|++|++||+||.. ..+.++..+++ .+..-
T Consensus 209 d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~- 287 (327)
T 3ohm_A 209 ESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPD- 287 (327)
T ss_dssp SCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTT-
T ss_pred ccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhccc-
Confidence 5668899999999999999888778999999999999843 24556655542 22222
Q ss_pred CCCcEEEEEecccCCCCHHHHHHHHHHHHHHh
Q psy15732 513 CGRSWHIQACNAQSGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 513 ~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~~ 544 (550)
..+.+.+++|||++++||+++|+.+.+.+.++
T Consensus 288 ~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 288 SDKIIYSHFTCATDTENIRFVFAAVKDTILQL 319 (327)
T ss_dssp TTSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999998765
No 158
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.74 E-value=6.3e-09 Score=94.35 Aligned_cols=79 Identities=15% Similarity=0.078 Sum_probs=56.9
Q ss_pred CccchhhHHHHH-HHHHHHhhccCcCCCeEEEEecCCCCCCC------------CCHHHHHHhcCCCcccCCCc-EEEEE
Q psy15732 456 DSADKERLPEAL-AELTKLIAEKELKDAALLLLANKQDIPGC------------ETVESITEAFDLYKLCCGRS-WHIQA 521 (550)
Q Consensus 456 D~~d~~~~~~~~-~~l~~~~~~~~~~~~pili~~NK~Dl~~~------------~~~~~i~~~~~l~~~~~~~~-~~~~~ 521 (550)
|++++.+|+.+. .|+..+.... .++|++||+||+|+... ++.++..+... ..+ ..+++
T Consensus 88 d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~------~~~~~~~~~ 159 (182)
T 3bwd_D 88 SLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKK------LIGAPAYIE 159 (182)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHH------HHTCSEEEE
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHH------HcCCCEEEE
Confidence 456788888887 5777664432 47999999999999543 13333333332 122 37899
Q ss_pred ecccCCCCHHHHHHHHHHHHH
Q psy15732 522 CNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 522 ~SA~~g~gi~e~f~~l~~~~~ 542 (550)
|||++|.||+++|+||.+.+.
T Consensus 160 ~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 160 CSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp CCTTTCTTHHHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHHHHh
Confidence 999999999999999998764
No 159
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.72 E-value=4.1e-08 Score=91.72 Aligned_cols=92 Identities=22% Similarity=0.351 Sum_probs=59.2
Q ss_pred EEEEeeCCCCCccch-hhHHHHHHHHHHHhhcc--CcCCCeEEEEecCCCCCCCCCHHHHHHhcC---------------
Q psy15732 446 RVVTLGLDSADSADK-ERLPEALAELTKLIAEK--ELKDAALLLLANKQDIPGCETVESITEAFD--------------- 507 (550)
Q Consensus 446 ~~~~~~~d~~D~~d~-~~~~~~~~~l~~~~~~~--~~~~~pili~~NK~Dl~~~~~~~~i~~~~~--------------- 507 (550)
..+++.+|. ++. ..+.++..||..++... ...++|++||+||+||......+++.+.+.
T Consensus 80 ~~~i~v~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s 156 (214)
T 2fh5_B 80 RAVVFVVDS---AAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPS 156 (214)
T ss_dssp EEEEEEEET---TTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC----
T ss_pred CEEEEEEEC---CCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccc
Confidence 444555554 443 35777777777665442 234689999999999987766555443322
Q ss_pred -----------CC----cccC---CCcEEEEEecccCC------CCHHHHHHHHHHH
Q psy15732 508 -----------LY----KLCC---GRSWHIQACNAQSG------EGLHEGLDWLSRQ 540 (550)
Q Consensus 508 -----------l~----~~~~---~~~~~~~~~SA~~g------~gi~e~f~~l~~~ 540 (550)
+. .+.. ...+.|++|||++| .||+++|+||++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 157 TLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp --------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 00 0100 11789999999999 9999999999875
No 160
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=3e-09 Score=81.73 Aligned_cols=50 Identities=22% Similarity=0.499 Sum_probs=42.4
Q ss_pred hhhccCCcceeccccccccccCCCCcEEecCCCc-chhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 58 RILILELALECRVCEDIFLTQGDKVPRLLHCGHT-VCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 58 ~~~~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~-fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
....+.+.+.|+||++.+. + |++++|||. ||..|+... ..||.||..+..
T Consensus 18 ~~~~~~~~~~C~IC~~~~~---~--~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 18 QLRRLQEEKLCKICMDRNI---A--IVFVPCGHLVTCKQCAEAV------DKCPMCYTVITF 68 (75)
T ss_dssp HHHHHHHHHSCSSSCSSCC---C--BCCSSSCCCCBCHHHHHHC------SBCTTTCCBCCC
T ss_pred HHHcCCCCCCCCcCCCCCC---C--EEEecCCCHHHHHHHhhCC------CCCccCCceecC
Confidence 3344567889999999999 9 999999999 999999654 469999998764
No 161
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.66 E-value=1.1e-08 Score=104.36 Aligned_cols=85 Identities=16% Similarity=0.116 Sum_probs=61.7
Q ss_pred hhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC-----C---------------------------CHHHHHHhc-
Q psy15732 460 KERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC-----E---------------------------TVESITEAF- 506 (550)
Q Consensus 460 ~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~-----~---------------------------~~~~i~~~~- 506 (550)
..+|.++..|+..+..+....++||+|+|||+||... . +.++...++
T Consensus 263 ~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~ 342 (402)
T 1azs_C 263 TNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIR 342 (402)
T ss_dssp SBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHH
Confidence 8999999999999988766788999999999998321 1 012222221
Q ss_pred ----CCCcc--cCCCcEEEEEecccCCCCHHHHHHHHHHHHHHh
Q psy15732 507 ----DLYKL--CCGRSWHIQACNAQSGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 507 ----~l~~~--~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~~ 544 (550)
.+... ...+.+.+++|||++|+||+++|+|+.+.+.+.
T Consensus 343 ~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~~ 386 (402)
T 1azs_C 343 DEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM 386 (402)
T ss_dssp HHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHHHH
Confidence 11100 012468889999999999999999999887543
No 162
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.64 E-value=1.4e-08 Score=84.90 Aligned_cols=51 Identities=24% Similarity=0.494 Sum_probs=40.9
Q ss_pred CcceeccccccccccCCCCcE------------------EecCCCcchhhhHhhcccC---CCccCCCCCCCcccCC
Q psy15732 64 LALECRVCEDIFLTQGDKVPR------------------LLHCGHTVCLACLLRLPIK---DDTITCPFDRQPTPVG 119 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~------------------~l~CgH~fC~~Cl~~~~~~---~~~~~CP~Cr~~~~~~ 119 (550)
.+..|+||++.|. + |. .++|||.||..||..|+.. .....||.||..+...
T Consensus 24 ~~~~C~ICl~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLA---V--ASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETT---S--CCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhc---C--cccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3469999999997 4 32 6799999999999999842 2467899999988643
No 163
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.62 E-value=9.6e-09 Score=79.52 Aligned_cols=49 Identities=31% Similarity=0.650 Sum_probs=42.4
Q ss_pred hhccCCcceeccccccccccCCCCcEEecCCCc-chhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 59 ILILELALECRVCEDIFLTQGDKVPRLLHCGHT-VCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 59 ~~~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~-fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
...+.+...|+||++.+. + |+++||||. ||..|+..++ .||.||..+..
T Consensus 12 ~~~l~~~~~C~IC~~~~~---~--~v~~pCgH~~~C~~C~~~~~------~CP~Cr~~i~~ 61 (79)
T 2yho_A 12 LRKLKEAMLCMVCCEEEI---N--STFCPCGHTVCCESCAAQLQ------SCPVCRSRVEH 61 (79)
T ss_dssp HHHHHHHTBCTTTSSSBC---C--EEEETTCBCCBCHHHHTTCS------BCTTTCCBCCE
T ss_pred HHcCCCCCEeEEeCcccC---c--EEEECCCCHHHHHHHHHhcC------cCCCCCchhhC
Confidence 344567789999999999 9 999999999 9999998874 69999998754
No 164
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.05 E-value=4.3e-09 Score=97.74 Aligned_cols=84 Identities=11% Similarity=0.087 Sum_probs=54.0
Q ss_pred CccchhhHHHHH-HHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHh--------cCCCcccCCCcE-EEEEeccc
Q psy15732 456 DSADKERLPEAL-AELTKLIAEKELKDAALLLLANKQDIPGCETVESITEA--------FDLYKLCCGRSW-HIQACNAQ 525 (550)
Q Consensus 456 D~~d~~~~~~~~-~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~--------~~l~~~~~~~~~-~~~~~SA~ 525 (550)
|+++..+|++.. .|+..+... ..++|++||+||+|+.......+.... -....+....+. .++++||+
T Consensus 110 D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~ 187 (204)
T 3th5_A 110 SLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 187 (204)
Confidence 556677888876 666665432 237999999999999653211110000 001111112333 78999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy15732 526 SGEGLHEGLDWLSRQL 541 (550)
Q Consensus 526 ~g~gi~e~f~~l~~~~ 541 (550)
+|.||+++|+||.+.+
T Consensus 188 ~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 188 TQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999998765
No 165
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=98.59 E-value=7.9e-10 Score=82.16 Aligned_cols=55 Identities=22% Similarity=0.431 Sum_probs=45.9
Q ss_pred CCCCCCCCCcccccceeecccccCCccccccccccccccccccCCCCcccHHHHHHHHHHHHH
Q psy15732 217 REKPFCSSHPTNIAEFICLEEHCQTSAQYPPLMCFICKDYGRHKTHKHALVEIEAENLRSYVK 279 (550)
Q Consensus 217 ~~~~~C~~H~~~~l~~fC~~~~C~~~~~c~~~iC~~C~~~~~H~~H~~~~l~~a~~~~~~~l~ 279 (550)
.....|+.|+.+++++||.+|. .+||..|...+.|++|.+.++++|++..+++|+
T Consensus 6 ~~~~~C~~H~~e~l~lfC~~d~--------~~iC~~C~~~~~H~~H~~~~l~~a~~~~k~~L~ 60 (64)
T 2d8u_A 6 SGHPMCKEHEDEKINIYCLTCE--------VPTCSMCKVFGIHKACEVAPLQSVFQGQKTESG 60 (64)
T ss_dssp CCCCCCSSCTTCCCCSEESSSC--------CCCCSHHHHSSSTTSSCEECTTTCCSSCCCCSS
T ss_pred CCCCcCcCcCCCccceEcCcCC--------ceeCccccCCCcCCCCCeeCHHHHHHHHHHHHH
Confidence 3456899996669999998844 999999998789999999999998877665544
No 166
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.57 E-value=1.4e-07 Score=89.21 Aligned_cols=92 Identities=12% Similarity=0.163 Sum_probs=58.9
Q ss_pred EEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCHH---HHHHhcCCCcccCCCcEEEE
Q psy15732 446 RVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETVE---SITEAFDLYKLCCGRSWHIQ 520 (550)
Q Consensus 446 ~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~---~i~~~~~l~~~~~~~~~~~~ 520 (550)
..+++.+|..|....+ +..+..|+..+... ..++|++||+||+|+... +..+ .+.+.... . ...+.++
T Consensus 110 d~~i~v~d~~~~~s~~-~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~ 182 (228)
T 2qu8_A 110 GVILFIIDISEQCGLT-IKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDN--V--KNPIKFS 182 (228)
T ss_dssp EEEEEEEETTCTTSSC-HHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHH--C--CSCEEEE
T ss_pred cEEEEEEecccccCcc-hHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHh--c--CCCceEE
Confidence 3556666665433322 34456777766432 247899999999999653 3322 22222221 0 1237999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHh
Q psy15732 521 ACNAQSGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 521 ~~SA~~g~gi~e~f~~l~~~~~~~ 544 (550)
+|||++|.||+++|+||++.+.+.
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 183 SFSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999987543
No 167
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.56 E-value=5.9e-08 Score=88.82 Aligned_cols=85 Identities=19% Similarity=0.197 Sum_probs=55.6
Q ss_pred EEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHH----HHHhcCCCcccCCCcEEEEE
Q psy15732 446 RVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVES----ITEAFDLYKLCCGRSWHIQA 521 (550)
Q Consensus 446 ~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~----i~~~~~l~~~~~~~~~~~~~ 521 (550)
.++++.+|+.+... ........|+... ++|++||+||+|+........ +.+.+. ....+.+++
T Consensus 106 ~~vi~v~d~~~~~~-~~~~~~~~~~~~~-------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 172 (195)
T 3pqc_A 106 QMVFLLVDGRIPPQ-DSDLMMVEWMKSL-------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFS-----KYGEYTIIP 172 (195)
T ss_dssp EEEEEEEETTSCCC-HHHHHHHHHHHHT-------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHH-----SSCCSCEEE
T ss_pred eEEEEEecCCCCCC-HHHHHHHHHHHHc-------CCCEEEEEEChhcCChHHHHHHHHHHHHHHh-----hcCCCceEE
Confidence 55666666643322 2233334454433 589999999999975433333 333332 124568999
Q ss_pred ecccCCCCHHHHHHHHHHHHHH
Q psy15732 522 CNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 522 ~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
+||++|.||+++|+||.+.+.+
T Consensus 173 ~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 173 TSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHC-
T ss_pred EecCCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999998754
No 168
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.55 E-value=6.5e-08 Score=96.82 Aligned_cols=80 Identities=13% Similarity=0.103 Sum_probs=58.9
Q ss_pred CccchhhHHHHH-HHHHHHhhccCcCCCeEEEEecCCCCCCC--------------CCHHHHHHhcCCCcccCCCc-EEE
Q psy15732 456 DSADKERLPEAL-AELTKLIAEKELKDAALLLLANKQDIPGC--------------ETVESITEAFDLYKLCCGRS-WHI 519 (550)
Q Consensus 456 D~~d~~~~~~~~-~~l~~~~~~~~~~~~pili~~NK~Dl~~~--------------~~~~~i~~~~~l~~~~~~~~-~~~ 519 (550)
|+++..+|..+. .|+..+.... .++|++||+||+|+... ++.+++.+... ..+ +.|
T Consensus 235 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~~~~~~ 306 (332)
T 2wkq_A 235 SLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK------EIGAVKY 306 (332)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH------HTTCSEE
T ss_pred eCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHH------HcCCcEE
Confidence 788889999887 5666664432 37999999999999543 33333333332 122 489
Q ss_pred EEecccCCCCHHHHHHHHHHHHHH
Q psy15732 520 QACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 520 ~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
++|||++|.||+++|+||.+.+.+
T Consensus 307 ~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 307 LECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEecCCCCcCHHHHHHHHHHHHhc
Confidence 999999999999999999988753
No 169
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.55 E-value=1.2e-08 Score=82.20 Aligned_cols=69 Identities=14% Similarity=0.331 Sum_probs=47.9
Q ss_pred CcceeccccccccccCCCCcEEe---cCCCcchhhhHhhcccC----C--CccCCCC--CCCcccCCCCCccCccccHHH
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLL---HCGHTVCLACLLRLPIK----D--DTITCPF--DRQPTPVGYSGVWGLKKNFAL 132 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l---~CgH~fC~~Cl~~~~~~----~--~~~~CP~--Cr~~~~~~~~~~~~l~~n~~l 132 (550)
+.+.|+||++.|. . |.++ +|||.||..|+..+|.. + ..+.||. |+....+++. ...+...
T Consensus 4 ~~~~C~IC~~~~~---~--~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~----~i~~ll~ 74 (94)
T 1wim_A 4 GSSGCKLCLGEYP---V--EQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN----EIECMVA 74 (94)
T ss_dssp SBCCCSSSCCCCB---G--GGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH----HHHHHSC
T ss_pred CCcCCcccCcccc---c--ccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH----HHHHHCC
Confidence 5689999999998 6 7554 79999999999998862 2 3578999 9988333221 1223333
Q ss_pred HHHHHHHHh
Q psy15732 133 LELIEKIQT 141 (550)
Q Consensus 133 ~~~~~~~~~ 141 (550)
.++.+++..
T Consensus 75 ~~~~~ky~~ 83 (94)
T 1wim_A 75 AEIMQRYKK 83 (94)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555554
No 170
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.55 E-value=3.2e-08 Score=90.30 Aligned_cols=87 Identities=14% Similarity=0.070 Sum_probs=56.4
Q ss_pred CccchhhHHHH-HHHHHH--------HhhccCcCCCeEEEEecCCCCCCCC--CHHHHHHhcCCCcccCCCcEEEEEecc
Q psy15732 456 DSADKERLPEA-LAELTK--------LIAEKELKDAALLLLANKQDIPGCE--TVESITEAFDLYKLCCGRSWHIQACNA 524 (550)
Q Consensus 456 D~~d~~~~~~~-~~~l~~--------~~~~~~~~~~pili~~NK~Dl~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~SA 524 (550)
|.+|..+|.+. ..|... ++......++|++||+||+|+.... ..+++.+.+++. +. .....+++|||
T Consensus 88 ~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~Sa 165 (190)
T 2cxx_A 88 LVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVP-LS-EIDKVFIPISA 165 (190)
T ss_dssp EEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCC-GG-GHHHHEEECCT
T ss_pred EEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhh-hh-ccCCcEEEEec
Confidence 45566667655 344331 2222222569999999999997653 233444555531 10 11346899999
Q ss_pred cCCCCHHHHHHHHHHHHHHh
Q psy15732 525 QSGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 525 ~~g~gi~e~f~~l~~~~~~~ 544 (550)
++|.||+++|+||.+.+...
T Consensus 166 ~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 166 KFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp TTCTTHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHhcchh
Confidence 99999999999999988664
No 171
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.53 E-value=2.8e-07 Score=82.94 Aligned_cols=90 Identities=13% Similarity=0.122 Sum_probs=58.6
Q ss_pred EEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCC-CcccCC--CcEEEEEec
Q psy15732 447 VVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDL-YKLCCG--RSWHIQACN 523 (550)
Q Consensus 447 ~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l-~~~~~~--~~~~~~~~S 523 (550)
.+++.+|..+......+ .++..+. ..++|++||+||+|+... +.+++...+.. ..+... ..+.++++|
T Consensus 81 ~~i~v~d~~~~~~~~~~----~~l~~~~----~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (178)
T 2lkc_A 81 IVILVVAADDGVMPQTV----EAINHAK----AANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLS 151 (178)
T ss_dssp EEEEEEETTCCCCHHHH----HHHHHHG----GGSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECC
T ss_pred EEEEEEECCCCCcHHHH----HHHHHHH----hCCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEe
Confidence 45555555443333333 3444442 246899999999999764 44555554432 112111 237999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHhc
Q psy15732 524 AQSGEGLHEGLDWLSRQLIAAG 545 (550)
Q Consensus 524 A~~g~gi~e~f~~l~~~~~~~~ 545 (550)
|++|.||+++|+||++.+....
T Consensus 152 a~~~~gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 152 AKTKEGLDHLLEMILLVSEMEE 173 (178)
T ss_dssp SSSSHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHhhhhhc
Confidence 9999999999999999886643
No 172
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.53 E-value=1e-07 Score=87.76 Aligned_cols=91 Identities=14% Similarity=0.094 Sum_probs=60.8
Q ss_pred EEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCC----CHHHHH----HhcCCCcccCCCcE
Q psy15732 446 RVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCE----TVESIT----EAFDLYKLCCGRSW 517 (550)
Q Consensus 446 ~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~----~~~~i~----~~~~l~~~~~~~~~ 517 (550)
..+++.+|..|. ..+.+..+..|+.++... ..++|++|||||+||.+.. ...++. +.+..... ....+
T Consensus 97 ~~~i~v~d~~~~-~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~ 172 (196)
T 3llu_A 97 GALIYVIDAQDD-YMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL-EKLHL 172 (196)
T ss_dssp SEEEEEEETTSC-CHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC-TTSCE
T ss_pred CEEEEEEECCCc-hHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh-hcCCc
Confidence 345666666554 347888888888877433 3579999999999985421 011121 11110111 14578
Q ss_pred EEEEecccCCCCHHHHHHHHHHHH
Q psy15732 518 HIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 518 ~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
.|++|||++ .||+++|++|++.+
T Consensus 173 ~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 173 SFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEECTTS-THHHHHHHHHHHHT
T ss_pred ceEEEEech-hhHHHHHHHHHHHh
Confidence 999999999 99999999999865
No 173
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.52 E-value=2.5e-08 Score=73.77 Aligned_cols=47 Identities=26% Similarity=0.578 Sum_probs=41.1
Q ss_pred CcceeccccccccccCCCCcEEe--cCCCc-chhhhHhhcccCCCccCCCCCCCccc
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLL--HCGHT-VCLACLLRLPIKDDTITCPFDRQPTP 117 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l--~CgH~-fC~~Cl~~~~~~~~~~~CP~Cr~~~~ 117 (550)
+...|+||++.+. + ++++ ||||. ||..|+..++. ....||.||+.+.
T Consensus 7 ~~~~C~IC~~~~~---~--~~~~~~pCgH~~~C~~C~~~~~~--~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPK---N--GCIVHGKTGHLMACFTCAKKLKK--RNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCS---C--EEEEETTEEEEEECHHHHHHHHH--TTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCC---C--EEEECCCCCChhhHHHHHHHHHH--cCCcCCCcCcchh
Confidence 5678999999999 8 9987 99999 89999999987 3457999999874
No 174
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=6.7e-08 Score=75.30 Aligned_cols=53 Identities=17% Similarity=0.359 Sum_probs=38.7
Q ss_pred Ccceecccccccccc---------CCCCcEEe-cCCCcchhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 64 LALECRVCEDIFLTQ---------GDKVPRLL-HCGHTVCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~---------~~~~P~~l-~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
+...|+||++.|... ++..++.+ +|||.||..||.+|+.. ...||.||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ--NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT--CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh--CCCCCCcCCCcch
Confidence 345688888887520 12225566 59999999999999884 3579999998754
No 175
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.48 E-value=4e-08 Score=72.47 Aligned_cols=47 Identities=28% Similarity=0.615 Sum_probs=40.7
Q ss_pred CcceeccccccccccCCCCcEEe--cCCCc-chhhhHhhcccCCCccCCCCCCCccc
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLL--HCGHT-VCLACLLRLPIKDDTITCPFDRQPTP 117 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l--~CgH~-fC~~Cl~~~~~~~~~~~CP~Cr~~~~ 117 (550)
....|+||++.+. + ++++ ||||. ||..|+..++.. ...||.||+.+.
T Consensus 6 ~~~~C~IC~~~~~---~--~~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPR---D--GNIIHGRTGHLVTCFHCARRLKKA--GASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBS---C--EEEEETTEEEEEECHHHHHHHHHT--TCBCTTTCCBCC
T ss_pred cCCCCcccCCcCC---C--eEEEecCCCCHhHHHHHHHHHHHh--CCcCCCcCchhh
Confidence 3468999999999 8 9888 99998 999999998873 367999999874
No 176
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.47 E-value=1.8e-07 Score=85.20 Aligned_cols=85 Identities=12% Similarity=0.079 Sum_probs=57.5
Q ss_pred Cccch-hhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHH----HHHHhcC-CCcccCCCcEEEEEecccCCC-
Q psy15732 456 DSADK-ERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVE----SITEAFD-LYKLCCGRSWHIQACNAQSGE- 528 (550)
Q Consensus 456 D~~d~-~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~----~i~~~~~-l~~~~~~~~~~~~~~SA~~g~- 528 (550)
|.++. .+|.....|+.++.... .++|++|||||+|+....... ++.+.+. ...+ .....++++||++|.
T Consensus 88 d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~ 163 (184)
T 2zej_A 88 DLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGF--PAIRDYHFVNATEESD 163 (184)
T ss_dssp EGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTS--CEEEEEEECCTTSCCH
T ss_pred eCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCC--cchhheEEEecccCch
Confidence 45665 57888888998876442 478999999999997542221 1222222 1111 122358999999997
Q ss_pred CHHHHHHHHHHHHHHh
Q psy15732 529 GLHEGLDWLSRQLIAA 544 (550)
Q Consensus 529 gi~e~f~~l~~~~~~~ 544 (550)
|++++|+.|.+.+.+.
T Consensus 164 ~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 164 ALAKLRKTIINESLNF 179 (184)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHhcc
Confidence 9999999998887543
No 177
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=7.9e-08 Score=71.94 Aligned_cols=45 Identities=33% Similarity=0.631 Sum_probs=39.1
Q ss_pred CCcceeccccccccccCCCCcEEecCCCc-chhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLLHCGHT-VCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l~CgH~-fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
.+...|.||++.+. + ++++||||. ||..|+... ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~---~--~v~~pCgH~~~C~~C~~~~------~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTV---N--WVLLPCRHTCLCDGCVKYF------QQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCC---C--CEETTTTBCCSCTTHHHHC------SSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCC---C--EEEECCCChhhhHHHHhcC------CCCCCCCcchhc
Confidence 35689999999999 9 999999999 999999854 459999998754
No 178
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.45 E-value=1.3e-07 Score=94.25 Aligned_cols=85 Identities=16% Similarity=0.209 Sum_probs=64.1
Q ss_pred chhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC-----------------CCCHHHHHHhc-----------CCCc
Q psy15732 459 DKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG-----------------CETVESITEAF-----------DLYK 510 (550)
Q Consensus 459 d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~-----------------~~~~~~i~~~~-----------~l~~ 510 (550)
+..+|.++..|+..++.++...++|++|+|||+||.. ..+.++..+++ .+..
T Consensus 206 ~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~ 285 (340)
T 4fid_A 206 NTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNI 285 (340)
T ss_dssp CSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC
T ss_pred ccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhc
Confidence 7899999999999999888778999999999999842 12344443322 1111
Q ss_pred ccC----------CCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 511 LCC----------GRSWHIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 511 ~~~----------~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
-.. ++.+.+++|||+++.||+++|+.+.+.+..
T Consensus 286 ~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 286 SGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp --------------CEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 110 157999999999999999999999988754
No 179
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.45 E-value=6.5e-08 Score=96.69 Aligned_cols=51 Identities=25% Similarity=0.520 Sum_probs=43.4
Q ss_pred cCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 62 LELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
......|+||++.+. + |+.++|||.||..|+..|... ....||.||..+..
T Consensus 329 ~~~~~~C~ICle~~~---~--pv~lpCGH~FC~~Ci~~wl~~-~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 329 GSTFQLCKICAENDK---D--VKIEPCGHLMCTSCLTSWQES-EGQGCPFCRCEIKG 379 (389)
T ss_dssp TTSSSBCTTTSSSBC---C--EEEETTCCEECHHHHHHHHHH-TCSBCTTTCCBCCE
T ss_pred cCCCCCCCccCcCCC---C--eEEeCCCChhhHHHHHHHHhc-CCCCCCCCCCccCC
Confidence 344589999999999 9 999999999999999988762 34579999998764
No 180
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.44 E-value=2.6e-07 Score=84.65 Aligned_cols=84 Identities=10% Similarity=0.142 Sum_probs=55.8
Q ss_pred EEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCH----HHHHHhcCCCcccCCCcEEEEE
Q psy15732 446 RVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETV----ESITEAFDLYKLCCGRSWHIQA 521 (550)
Q Consensus 446 ~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~----~~i~~~~~l~~~~~~~~~~~~~ 521 (550)
..+++.+|..+....... ....|+. . .++|++||+||+|+...... +++.+.++. ...+.+++
T Consensus 107 ~~~i~v~d~~~~~~~~~~-~~~~~~~----~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 173 (195)
T 1svi_A 107 KAVVQIVDLRHAPSNDDV-QMYEFLK----Y---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNI-----DPEDELIL 173 (195)
T ss_dssp EEEEEEEETTSCCCHHHH-HHHHHHH----H---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTC-----CTTSEEEE
T ss_pred CEEEEEEECCCCCCHHHH-HHHHHHH----H---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcc-----cCCCceEE
Confidence 566677776543322211 1123332 2 45899999999999765333 334443442 34678999
Q ss_pred ecccCCCCHHHHHHHHHHHHH
Q psy15732 522 CNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 522 ~SA~~g~gi~e~f~~l~~~~~ 542 (550)
+||++|.||+++|+||.+.+.
T Consensus 174 ~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 174 FSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHT
T ss_pred EEccCCCCHHHHHHHHHHHhc
Confidence 999999999999999998764
No 181
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.43 E-value=1.1e-05 Score=81.71 Aligned_cols=86 Identities=17% Similarity=0.251 Sum_probs=58.3
Q ss_pred EEEeeCCCCCccchh--hHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecc
Q psy15732 447 VVTLGLDSADSADKE--RLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNA 524 (550)
Q Consensus 447 ~~~~~~d~~D~~d~~--~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA 524 (550)
.+++.+|+. +.. .+++...|+..+.... .++|++||+||+|+......+++.+.+. ...+.++++||
T Consensus 249 ~illV~D~s---~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~~------~~~~~~~~iSA 317 (357)
T 2e87_A 249 LIIYIFDPS---EHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFVK------EKGLNPIKISA 317 (357)
T ss_dssp EEEEEECTT---CTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHHH------HTTCCCEECBT
T ss_pred EEEEEEeCC---ccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHHH------hcCCCeEEEeC
Confidence 344555543 333 4566667777765432 2789999999999975433333433332 23457899999
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q psy15732 525 QSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 525 ~~g~gi~e~f~~l~~~~~~ 543 (550)
++|+||+++|+||.+.+..
T Consensus 318 ~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999988754
No 182
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=98.40 E-value=5.7e-08 Score=67.99 Aligned_cols=45 Identities=22% Similarity=0.442 Sum_probs=37.4
Q ss_pred CCCCCCCCcccccceeecccccCCccccccccccccccccccCCCCcccHHHHH
Q psy15732 218 EKPFCSSHPTNIAEFICLEEHCQTSAQYPPLMCFICKDYGRHKTHKHALVEIEA 271 (550)
Q Consensus 218 ~~~~C~~H~~~~l~~fC~~~~C~~~~~c~~~iC~~C~~~~~H~~H~~~~l~~a~ 271 (550)
....|+.|+.+++++||.+|. .+||..|.. +.|++|.+.++++|+
T Consensus 5 ~~~~C~~H~~e~l~lfC~~~~--------~~iC~~C~~-~~H~~H~~~~l~ea~ 49 (50)
T 2yvr_A 5 RTVYCNVHKHEPLVLFCESCD--------TLTCRDCQL-NAHKDHQYQFLEDAV 49 (50)
T ss_dssp CSCBCSSSTTCBCCEEETTTT--------EEECHHHHH-TTTTTCCEEETTC--
T ss_pred CCCcCcCCCCCCEEEEeCCCC--------EEEecccCC-CcCCCCceecHHHHh
Confidence 356799996669999998844 999999998 699999999998875
No 183
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.40 E-value=3.9e-08 Score=84.62 Aligned_cols=53 Identities=25% Similarity=0.486 Sum_probs=43.9
Q ss_pred cCCcceeccccccccccCC-----CCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 62 LELALECRVCEDIFLTQGD-----KVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~-----~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
..+.+.|+||++.|. + +.++.++|||.||..|+..|+. ....||.||..+...
T Consensus 69 ~~~~~~C~iC~~~~~---~~~~~~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 69 GSGTVSCPICMDGYS---EIVQNGRLIVSTECGHVFCSQCLRDSLK--NANTCPTCRKKINHK 126 (133)
T ss_dssp SSSSCBCTTTCCBHH---HHHHTTCCEEEETTSBEEEHHHHHHHHH--HCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCCccc---cccccCcceEeCCCCChhhHHHHHHHHH--cCCCCCCCCCcCChh
Confidence 356789999999998 5 1138889999999999999987 456899999988654
No 184
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.39 E-value=1.2e-07 Score=93.70 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=55.0
Q ss_pred EEEeeCCCCCccchh-hHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEeccc
Q psy15732 447 VVTLGLDSADSADKE-RLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQ 525 (550)
Q Consensus 447 ~~~~~~d~~D~~d~~-~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~ 525 (550)
.+++++| +++++ +|.....|+..+.. .++|++||+||+||......+++.+.+.. +. .. +.+++|||+
T Consensus 87 ~vilV~D---~~~~~~s~~~l~~~l~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~--~~-~~-~~~~~~SAk 155 (301)
T 1u0l_A 87 QVILVVT---VKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEEI--YS-GL-YPIVKTSAK 155 (301)
T ss_dssp EEEEEEC---SSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHH--HT-TT-SCEEECCTT
T ss_pred EEEEEEe---CCCCCCCHHHHHHHHHHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHH--Hh-hh-CcEEEEECC
Confidence 3444444 45554 56667778876632 46999999999999654222233333321 11 22 689999999
Q ss_pred CCCCHHHHHHHHHH
Q psy15732 526 SGEGLHEGLDWLSR 539 (550)
Q Consensus 526 ~g~gi~e~f~~l~~ 539 (550)
+|.||+++|.|+..
T Consensus 156 tg~gv~~lf~~l~g 169 (301)
T 1u0l_A 156 TGMGIEELKEYLKG 169 (301)
T ss_dssp TCTTHHHHHHHHSS
T ss_pred CCcCHHHHHHHhcC
Confidence 99999999999864
No 185
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.39 E-value=7.1e-08 Score=86.95 Aligned_cols=82 Identities=17% Similarity=0.206 Sum_probs=52.4
Q ss_pred EEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccC
Q psy15732 447 VVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQS 526 (550)
Q Consensus 447 ~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~ 526 (550)
.+++.+|..+. .+++ ...|+..+.... ..++|++||+||+||.+.. . .+.....+.+++|||++
T Consensus 86 ~~i~v~D~~~~---~s~~-~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~--------~---~~~~~~~~~~~~~SA~~ 149 (172)
T 2gj8_A 86 RVLFMVDGTTT---DAVD-PAEIWPEFIARL-PAKLPITVVRNKADITGET--------L---GMSEVNGHALIRLSART 149 (172)
T ss_dssp EEEEEEETTTC---CCCS-HHHHCHHHHHHS-CTTCCEEEEEECHHHHCCC--------C---EEEEETTEEEEECCTTT
T ss_pred EEEEEEECCCC---CCHH-HHHHHHHHHHhc-ccCCCEEEEEECccCCcch--------h---hhhhccCCceEEEeCCC
Confidence 44555555433 3333 235665554332 3579999999999985321 0 01112357899999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q psy15732 527 GEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 527 g~gi~e~f~~l~~~~~~~ 544 (550)
|.||+++|+||.+.+...
T Consensus 150 g~gv~~l~~~l~~~~~~~ 167 (172)
T 2gj8_A 150 GEGVDVLRNHLKQSMGFD 167 (172)
T ss_dssp CTTHHHHHHHHHHHC---
T ss_pred CCCHHHHHHHHHHHhhhc
Confidence 999999999999876543
No 186
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.38 E-value=1.2e-06 Score=80.66 Aligned_cols=81 Identities=12% Similarity=0.140 Sum_probs=61.1
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|.++..+|++...|+..+... ...+.|+++++||.||.. ....++..+.+. ..++.+++|||++|.|++++
T Consensus 86 d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~------~~~~~~~d~Sal~~~~i~~l 158 (199)
T 2f9l_A 86 DIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE------KNNLSFIETSALDSTNVEEA 158 (199)
T ss_dssp ETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH------HTTCEEEECCTTTCTTHHHH
T ss_pred ECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHHH------HcCCeEEEEeCCCCCCHHHH
Confidence 567777888888888776433 235689999999999954 345555555443 34568899999999999999
Q ss_pred HHHHHHHHHH
Q psy15732 534 LDWLSRQLIA 543 (550)
Q Consensus 534 f~~l~~~~~~ 543 (550)
|+||.+.+.+
T Consensus 159 ~~~l~~~~~~ 168 (199)
T 2f9l_A 159 FKNILTEIYR 168 (199)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 187
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=98.38 E-value=4.9e-08 Score=69.24 Aligned_cols=45 Identities=20% Similarity=0.522 Sum_probs=39.3
Q ss_pred CCCCCCCCcccccceeecccccCCccccccccccccccccccCCCCcccHHHHH
Q psy15732 218 EKPFCSSHPTNIAEFICLEEHCQTSAQYPPLMCFICKDYGRHKTHKHALVEIEA 271 (550)
Q Consensus 218 ~~~~C~~H~~~~l~~fC~~~~C~~~~~c~~~iC~~C~~~~~H~~H~~~~l~~a~ 271 (550)
....|+.|.+ ++++||.+|+ .+||..|...++|++|.+.++++|+
T Consensus 7 ~~~~C~~H~e-~l~lfC~~d~--------~~iC~~C~~~~~H~~H~~~~l~ea~ 51 (53)
T 2did_A 7 GESLCPQHHE-ALSLFCYEDQ--------EAVCLICAISHTHRAHTVVPLSGPS 51 (53)
T ss_dssp SCCBCTTTCC-BCCEEESSSC--------SEECHHHHTSSTTTTSCEEECCCTT
T ss_pred CCCcChhhCC-eeeEEeCCCC--------eEEeccccCCCCCCCCcEeeHHHHh
Confidence 4568999995 9999999855 9999999987899999999998765
No 188
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.38 E-value=1.4e-07 Score=77.10 Aligned_cols=50 Identities=20% Similarity=0.500 Sum_probs=39.8
Q ss_pred CcceeccccccccccCCC---------------Cc-EEecCCCcchhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 64 LALECRVCEDIFLTQGDK---------------VP-RLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~---------------~P-~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
+.-.|+||++.|. +. .+ +.++|||.|+..||..|+. ....||.||+.+..
T Consensus 36 ~~d~CaIC~~~~~---~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~--~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIM---DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK--TRQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTT---SCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT--TCSBCSSSCSBCCE
T ss_pred CCCCCccCChhHh---CcCchhhccccccCCccceEeecccCcEECHHHHHHHHH--cCCcCcCCCCccee
Confidence 4568999999998 41 12 4469999999999999988 45679999998654
No 189
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.36 E-value=1.8e-07 Score=83.58 Aligned_cols=62 Identities=23% Similarity=0.232 Sum_probs=45.1
Q ss_pred HHHHHHHhhccCcCCCeEEEEecCCCCCCC--C--CHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHH
Q psy15732 467 LAELTKLIAEKELKDAALLLLANKQDIPGC--E--TVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 467 ~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~--~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
..|+..+.. .++|++||+||+|+... + ..+++.+.++ +.++++||++|.||+++|+||++.+
T Consensus 98 ~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 98 LYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG---------VKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT---------SCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred HHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHhC---------CCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 456666543 36899999999998432 1 2344444333 4689999999999999999999875
No 190
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.33 E-value=1.5e-07 Score=93.77 Aligned_cols=50 Identities=30% Similarity=0.583 Sum_probs=43.6
Q ss_pred hhhccCCcceeccccccccccCCCCcEEecCCCc-chhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 58 RILILELALECRVCEDIFLTQGDKVPRLLHCGHT-VCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 58 ~~~~~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~-fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
....+.+.+.|+||++.+. + |+++||||+ ||..|+..+ ..||.||..+..
T Consensus 288 ~~~~l~~~~~C~IC~~~~~---~--~v~lpCgH~~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 288 QLRRLQEERTCKVCMDKEV---S--VVFIPCGHLVVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp HHHHHHTTCBCTTTSSSBC---C--EEEETTCCEEECTTTGGGC------SBCTTTCCBCCE
T ss_pred HHHhCcCCCCCCccCCcCC---c--eEEcCCCChhHhHHHHhcC------CcCCCCCCCccC
Confidence 3455678899999999999 9 999999999 999999887 459999998753
No 191
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.32 E-value=6.4e-07 Score=88.37 Aligned_cols=91 Identities=13% Similarity=0.072 Sum_probs=54.3
Q ss_pred EEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCC----HHHHHHhcCCCcccC----CCcEE
Q psy15732 447 VVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCET----VESITEAFDLYKLCC----GRSWH 518 (550)
Q Consensus 447 ~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~----~~~i~~~~~l~~~~~----~~~~~ 518 (550)
.+++++|..|. -.+.+..+..|+..+... .+++|++|+|||+||..... ..++....+ ..+++ +.++.
T Consensus 75 ~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~--~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~-~~la~~~~~~~~i~ 150 (331)
T 3r7w_B 75 ALVYVIDSQDE-YINAITNLAMIIEYAYKV--NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTG-EELLELGLDGVQVS 150 (331)
T ss_dssp EEEEECCCSSC-TTHHHHHHHHHHHHHHHH--CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHH-HTTSSSSCSCCCEE
T ss_pred EEEEEEECCch-HHHHHHHHHHHHHHHhhc--CCCCcEEEEEECcccCchhhhhhHHHHhhHHHH-HHHHhhcccccCce
Confidence 34445544433 124444444445444322 35799999999999965311 112222111 11111 25789
Q ss_pred EEEecccCCCCHHHHHHHHHHHHH
Q psy15732 519 IQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 519 ~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
|++|||++ .||.++|..|+..+.
T Consensus 151 f~eTSAkd-~nV~eAFs~iv~~li 173 (331)
T 3r7w_B 151 FYLTSIFD-HSIYEAFSRIVQKLI 173 (331)
T ss_dssp EECCCSSS-SHHHHHHHHHHTTSS
T ss_pred EEEeccCC-CcHHHHHHHHHHHHH
Confidence 99999998 599999999988664
No 192
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.31 E-value=2.2e-07 Score=82.06 Aligned_cols=79 Identities=20% Similarity=0.275 Sum_probs=50.1
Q ss_pred EEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcE-EEEEecc
Q psy15732 446 RVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSW-HIQACNA 524 (550)
Q Consensus 446 ~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~-~~~~~SA 524 (550)
..+++.+|..+.. .....|+..++.. .++|++||+||+|+... .+++.+... .++ .++++||
T Consensus 81 ~~~i~v~d~~~~~-----~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~~~-------~~~~~~~~~Sa 143 (161)
T 2dyk_A 81 EVVLFAVDGRAEL-----TQADYEVAEYLRR---KGKPVILVATKVDDPKH--ELYLGPLYG-------LGFGDPIPTSS 143 (161)
T ss_dssp SEEEEEEESSSCC-----CHHHHHHHHHHHH---HTCCEEEEEECCCSGGG--GGGCGGGGG-------GSSCSCEECBT
T ss_pred CEEEEEEECCCcc-----cHhHHHHHHHHHh---cCCCEEEEEECcccccc--hHhHHHHHh-------CCCCCeEEEec
Confidence 3455566664431 1222344444333 35899999999999654 122222221 122 5899999
Q ss_pred cCCCCHHHHHHHHHHHH
Q psy15732 525 QSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 525 ~~g~gi~e~f~~l~~~~ 541 (550)
++|.||+++|+||.+.+
T Consensus 144 ~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 144 EHARGLEELLEAIWERL 160 (161)
T ss_dssp TTTBSHHHHHHHHHHHC
T ss_pred ccCCChHHHHHHHHHhC
Confidence 99999999999998764
No 193
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=98.29 E-value=1.3e-07 Score=65.46 Aligned_cols=43 Identities=28% Similarity=0.607 Sum_probs=36.7
Q ss_pred CCCCCCCCcccccceeecccccCCccccccccccccccccccCCCCcccHH
Q psy15732 218 EKPFCSSHPTNIAEFICLEEHCQTSAQYPPLMCFICKDYGRHKTHKHALVE 268 (550)
Q Consensus 218 ~~~~C~~H~~~~l~~fC~~~~C~~~~~c~~~iC~~C~~~~~H~~H~~~~l~ 268 (550)
+...|+.|.++++++||.+|+ .+||..|...+.|++|.+.+++
T Consensus 5 ~~~~C~~H~~e~l~lfC~~d~--------~~iC~~C~~~~~H~~H~~~~l~ 47 (48)
T 3ddt_A 5 SHPMCKEHEDEKINIYCLTCE--------VPTCSMCKVFGIHKACEVAPLQ 47 (48)
T ss_dssp TSCBCSSSTTSBCCEEETTTT--------EEECHHHHHHSTTTTSCEEECC
T ss_pred cCCcCCCCCCccccEEcCCCC--------eeEcccccCCCcCCCCcEEeCC
Confidence 456799999659999999854 9999999877899999998764
No 194
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=3.4e-07 Score=70.70 Aligned_cols=55 Identities=24% Similarity=0.313 Sum_probs=45.2
Q ss_pred CCcceeccccccccccCCCCcEEecCC-----CcchhhhHhhcccCCCccCCCCCCCcccCCC
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLLHCG-----HTVCLACLLRLPIKDDTITCPFDRQPTPVGY 120 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l~Cg-----H~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~ 120 (550)
.+...|.||++.|... + |+++||. |.|...||.+|+.......||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~~-~--~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDE-S--PLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSS-S--CEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCC-C--eeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 3567899999999743 5 8888996 9999999999988545568999999987643
No 195
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.28 E-value=5.2e-07 Score=90.38 Aligned_cols=94 Identities=22% Similarity=0.293 Sum_probs=63.5
Q ss_pred EEEEEeeCCCCCccchhhHHHHHHHHHHHhhc-cCcCCCeEEEEecCCCCCCCC-CHHHHHHhcCCCcccCCCcEEEEEe
Q psy15732 445 MRVVTLGLDSADSADKERLPEALAELTKLIAE-KELKDAALLLLANKQDIPGCE-TVESITEAFDLYKLCCGRSWHIQAC 522 (550)
Q Consensus 445 ~~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~-~~~~~~pili~~NK~Dl~~~~-~~~~i~~~~~l~~~~~~~~~~~~~~ 522 (550)
..++++.+|..+....+.++....|+.++... +...++|++||+||+|+.... ..+++.+.++ . .+.++++
T Consensus 237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~------~-~~~v~~i 309 (342)
T 1lnz_A 237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT------D-DYPVFPI 309 (342)
T ss_dssp CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC------S-CCCBCCC
T ss_pred ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhh------c-CCCEEEE
Confidence 34566666665532245666666666666443 224679999999999996531 1233444433 1 1578899
Q ss_pred cccCCCCHHHHHHHHHHHHHHhc
Q psy15732 523 NAQSGEGLHEGLDWLSRQLIAAG 545 (550)
Q Consensus 523 SA~~g~gi~e~f~~l~~~~~~~~ 545 (550)
||++|+||+++|+||.+.+....
T Consensus 310 SA~tg~gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 310 SAVTREGLRELLFEVANQLENTP 332 (342)
T ss_dssp SSCCSSTTHHHHHHHHHHHTSCC
T ss_pred ECCCCcCHHHHHHHHHHHHhhCc
Confidence 99999999999999999986543
No 196
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=98.27 E-value=3e-07 Score=61.65 Aligned_cols=39 Identities=28% Similarity=0.638 Sum_probs=34.3
Q ss_pred CCCCCCcccccceeecccccCCccccccccccccccccccCCCCcccH
Q psy15732 220 PFCSSHPTNIAEFICLEEHCQTSAQYPPLMCFICKDYGRHKTHKHALV 267 (550)
Q Consensus 220 ~~C~~H~~~~l~~fC~~~~C~~~~~c~~~iC~~C~~~~~H~~H~~~~l 267 (550)
..|+.|.+ .+++||.+|+ .+||..|..+++|++|.+.++
T Consensus 4 ~~C~~H~e-~l~lfC~~d~--------~~iC~~C~~~~~H~~H~~~~l 42 (42)
T 1fre_A 4 EKCSEHDE-RLKLYCKDDG--------TLSCVICRDSLKHASHNFLPI 42 (42)
T ss_dssp CCCCSSCS-SCCCCCCSSS--------SSSCCTTSSCSSCTTCCCCCC
T ss_pred ccchhhCC-eeeEEeCCCC--------eEEeccCCCCCCCCCCcEecC
Confidence 57999985 9999999865 999999998889999998764
No 197
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=1.3e-07 Score=68.44 Aligned_cols=45 Identities=18% Similarity=0.476 Sum_probs=39.2
Q ss_pred CCCCCCCCcccccceeecccccCCccccccccccccccccccCCCCcccHHHHH
Q psy15732 218 EKPFCSSHPTNIAEFICLEEHCQTSAQYPPLMCFICKDYGRHKTHKHALVEIEA 271 (550)
Q Consensus 218 ~~~~C~~H~~~~l~~fC~~~~C~~~~~c~~~iC~~C~~~~~H~~H~~~~l~~a~ 271 (550)
....|+.|.+ ++++||.+|+ .+||..|...++|++|.+.++++|+
T Consensus 13 ~~~~C~~H~e-~L~lfC~~d~--------~~iC~~C~~s~eH~~H~~~~l~ea~ 57 (59)
T 2yrg_A 13 KVDHCARHGE-KLLLFCQEDG--------KVICWLCERSQEHRGHHTFPTSGPS 57 (59)
T ss_dssp CSSBCTTTCC-BCCEEETTTC--------SEECHHHHTSTTTTTCCEEECCSSC
T ss_pred cCccChhhCc-eeeeecCCCC--------cEEecccCCCCcCCCCcEeeHHHHh
Confidence 4467999996 9999999865 9999999988899999999987653
No 198
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.23 E-value=4.7e-07 Score=84.93 Aligned_cols=92 Identities=14% Similarity=0.119 Sum_probs=55.7
Q ss_pred EEEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCH----HHHHHhcCCC-cccCCCcEEE
Q psy15732 445 MRVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETV----ESITEAFDLY-KLCCGRSWHI 519 (550)
Q Consensus 445 ~~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~----~~i~~~~~l~-~~~~~~~~~~ 519 (550)
..++++.+|..+.... . ...++..+. . .++|++||+||+|+...... +++.+.+... .+.....+.+
T Consensus 116 ~d~vi~v~d~~~~~~~-~---~~~~~~~l~-~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 187 (223)
T 4dhe_A 116 LCGMILMMDARRPLTE-L---DRRMIEWFA-P---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTV 187 (223)
T ss_dssp EEEEEEEEETTSCCCH-H---HHHHHHHHG-G---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEE
T ss_pred cCEEEEEEeCCCCCCH-H---HHHHHHHHH-h---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeE
Confidence 4556777777543221 1 123333332 2 45899999999999654222 2222222200 0000356899
Q ss_pred EEecccCCCCHHHHHHHHHHHHHHh
Q psy15732 520 QACNAQSGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 520 ~~~SA~~g~gi~e~f~~l~~~~~~~ 544 (550)
+++||++|.||+++|+||.+.+...
T Consensus 188 ~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 188 QLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp EEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred EEeecCCCcCHHHHHHHHHHhcCcc
Confidence 9999999999999999999988654
No 199
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.22 E-value=2.9e-06 Score=77.66 Aligned_cols=79 Identities=11% Similarity=0.133 Sum_probs=58.8
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|.++..+|++...|+..+... ...+.|+++++||.||.. ....++..+.+. ..++.+++|||++|.|++++
T Consensus 110 d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~------~~~~~~ld~Sald~~~v~~l 182 (191)
T 1oix_A 110 DIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE------KNGLSFIETSALDSTNVEAA 182 (191)
T ss_dssp ETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH------HTTCEEEECCTTTCTTHHHH
T ss_pred ECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHH------HcCCEEEEEeCCCCCCHHHH
Confidence 566677788777788766433 235689999999999964 344555554443 34568899999999999999
Q ss_pred HHHHHHHH
Q psy15732 534 LDWLSRQL 541 (550)
Q Consensus 534 f~~l~~~~ 541 (550)
|+||.+.+
T Consensus 183 ~~~l~~~i 190 (191)
T 1oix_A 183 FQTILTEI 190 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998865
No 200
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.22 E-value=7.1e-07 Score=81.16 Aligned_cols=71 Identities=21% Similarity=0.199 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC----CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHH
Q psy15732 462 RLPEALAELTKLIAEKELKDAALLLLANKQDIPGC----ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWL 537 (550)
Q Consensus 462 ~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~----~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l 537 (550)
+++....|+..+.. .++|++|++||+|+... ....++.+.++ +.++++||++|.||+++|+||
T Consensus 97 ~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~~v~~l~~~i 163 (188)
T 2wjg_A 97 ALERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG---------VKVVPLSAAKKMGIEELKKAI 163 (188)
T ss_dssp GHHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT---------SCEEECBGGGTBSHHHHHHHH
T ss_pred hHHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHhC---------CCeEEEEecCCCCHHHHHHHH
Confidence 35556677776643 36899999999998432 23444444433 468999999999999999999
Q ss_pred HHHHHHhc
Q psy15732 538 SRQLIAAG 545 (550)
Q Consensus 538 ~~~~~~~~ 545 (550)
++.+....
T Consensus 164 ~~~~~~~~ 171 (188)
T 2wjg_A 164 SIAVKDKK 171 (188)
T ss_dssp HHHHTTC-
T ss_pred HHHHHhcc
Confidence 99886543
No 201
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.19 E-value=1.9e-06 Score=92.16 Aligned_cols=78 Identities=15% Similarity=0.158 Sum_probs=51.6
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
|+++.+++.. |+..+.... .++|++||+||+|+.. .+..+++.+.+. ...+.++++||++|.||+++
T Consensus 130 D~s~~~~~~~---~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~vSA~~g~gi~eL 198 (535)
T 3dpu_A 130 DSRTDSNKHY---WLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFP------AIENRFHRISCKNGDGVESI 198 (535)
T ss_dssp CGGGGGGHHH---HHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCG------GGTTCEEECCC-----CTTH
T ss_pred eCCCchhHHH---HHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHH------hcCCceEEEecCcccCHHHH
Confidence 5566566644 444443322 3689999999999964 345666777665 23346999999999999999
Q ss_pred HHHHHHHHHHh
Q psy15732 534 LDWLSRQLIAA 544 (550)
Q Consensus 534 f~~l~~~~~~~ 544 (550)
|++|++.+.+.
T Consensus 199 ~~~l~~~~~~~ 209 (535)
T 3dpu_A 199 AKSLKSAVLHP 209 (535)
T ss_dssp HHHHHHHHTCT
T ss_pred HHHHHHHHhcc
Confidence 99999988653
No 202
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.19 E-value=3.5e-07 Score=66.64 Aligned_cols=48 Identities=13% Similarity=0.157 Sum_probs=41.9
Q ss_pred cceeccccccccccCCCCcEEe-cCCCcchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 65 ALECRVCEDIFLTQGDKVPRLL-HCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 65 ~l~C~iC~~~~~~~~~~~P~~l-~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
.+.|+||++.+. + |+++ +|||+|++.||.+|+... -.||..+.++...
T Consensus 3 ~~~CpIs~~~m~---d--PV~~~~sG~~yer~~I~~~l~~~--~~cP~t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVPR---R--PVLSPKSRTIFEKSLLEQYVKDT--GNDPITNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCCS---S--EEEETTTTEEEEHHHHHHHHHHH--SBCTTTCCBCCGG
T ss_pred eEEecCCCCCCC---C--CEEeCCCCcEEcHHHHHHHHHhC--CCCcCCcCCCChh
Confidence 478999999999 9 9999 999999999999999743 3599999988654
No 203
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.11 E-value=2.2e-06 Score=88.29 Aligned_cols=82 Identities=16% Similarity=0.096 Sum_probs=55.0
Q ss_pred EEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEeccc
Q psy15732 446 RVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQ 525 (550)
Q Consensus 446 ~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~ 525 (550)
.++++.+|+ +..+... .|+..+... ++|++||+||+|+......+...+ +. ...++.++++||+
T Consensus 115 D~vllVvD~---~~~~~~~---~~l~~l~~~----~~piIvV~NK~Dl~~~~~~~~~~~-l~-----~~~g~~v~~vSAk 178 (423)
T 3qq5_A 115 DCGILVTDS---APTPYED---DVVNLFKEM----EIPFVVVVNKIDVLGEKAEELKGL-YE-----SRYEAKVLLVSAL 178 (423)
T ss_dssp SEEEEECSS---SCCHHHH---HHHHHHHHT----TCCEEEECCCCTTTTCCCTHHHHH-SS-----CCTTCCCCCCSSC
T ss_pred CEEEEEEeC---CChHHHH---HHHHHHHhc----CCCEEEEEeCcCCCCccHHHHHHH-HH-----HHcCCCEEEEECC
Confidence 345555555 2333333 444444322 589999999999977654433333 33 1345688999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy15732 526 SGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 526 ~g~gi~e~f~~l~~~~~~ 543 (550)
+|.||+++|+||.+.+..
T Consensus 179 tg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 179 QKKGFDDIGKTISEILPG 196 (423)
T ss_dssp CTTSTTTHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHhhhh
Confidence 999999999999998843
No 204
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.09 E-value=5.9e-06 Score=86.49 Aligned_cols=82 Identities=17% Similarity=0.154 Sum_probs=56.9
Q ss_pred EEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHH--HHHhcCCCcccCCCcEEEEEec
Q psy15732 446 RVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVES--ITEAFDLYKLCCGRSWHIQACN 523 (550)
Q Consensus 446 ~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~--i~~~~~l~~~~~~~~~~~~~~S 523 (550)
.++++.+|+.+....+.+.+...|+..+ .++|++||+||+|+......+. +.+. + .+.++++|
T Consensus 314 D~vl~VvD~s~~~s~~~~~~~~~~l~~l------~~~piIvV~NK~Dl~~~~~~~~~~l~~~-~--------~~~~i~vS 378 (476)
T 3gee_A 314 DLILYLLDLGTERLDDELTEIRELKAAH------PAAKFLTVANKLDRAANADALIRAIADG-T--------GTEVIGIS 378 (476)
T ss_dssp SEEEEEEETTTCSSGGGHHHHHHHHHHC------TTSEEEEEEECTTSCTTTHHHHHHHHHH-H--------TSCEEECB
T ss_pred CEEEEEEECCCCcchhhhHHHHHHHHhc------CCCCEEEEEECcCCCCccchhHHHHHhc-C--------CCceEEEE
Confidence 3556666666554444444555666554 2689999999999976543322 2221 0 13689999
Q ss_pred ccCCCCHHHHHHHHHHHHH
Q psy15732 524 AQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 524 A~~g~gi~e~f~~l~~~~~ 542 (550)
|++|.||+++|+||.+.+.
T Consensus 379 Aktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 379 ALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTTTBSHHHHHHHHTHHHH
T ss_pred ECCCCCHHHHHHHHHHHHh
Confidence 9999999999999999886
No 205
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.02 E-value=6.9e-07 Score=74.03 Aligned_cols=52 Identities=17% Similarity=0.458 Sum_probs=0.4
Q ss_pred cceecccccccccc------------CCCCcEE-ecCCCcchhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 65 ALECRVCEDIFLTQ------------GDKVPRL-LHCGHTVCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 65 ~l~C~iC~~~~~~~------------~~~~P~~-l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
.-.|+||++.|... ++..++. ++|+|.|+..||..|+. ....||.||+.+..
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~--~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK--TRQVCPLDNREWEF 112 (117)
T ss_dssp C------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH--cCCcCCCCCCeeee
Confidence 45899999999721 0111333 49999999999999987 35679999998654
No 206
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.00 E-value=4.9e-06 Score=80.68 Aligned_cols=71 Identities=17% Similarity=0.165 Sum_probs=50.0
Q ss_pred ccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC----CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHH
Q psy15732 457 SADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC----ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHE 532 (550)
Q Consensus 457 ~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~----~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e 532 (550)
+++.+++ ..|+..+.. .++|++|++||+|+... .....+.+.++ +.++++||++|.||++
T Consensus 90 ~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg---------~~vi~~SA~~g~gi~e 153 (272)
T 3b1v_A 90 ATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG---------VPVVATSALKQTGVDQ 153 (272)
T ss_dssp GGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT---------SCEEECBTTTTBSHHH
T ss_pred CCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC---------CCEEEEEccCCCCHHH
Confidence 4444444 345555543 36899999999998421 24455555554 3689999999999999
Q ss_pred HHHHHHHHHHH
Q psy15732 533 GLDWLSRQLIA 543 (550)
Q Consensus 533 ~f~~l~~~~~~ 543 (550)
+|+||.+.+..
T Consensus 154 l~~~i~~~~~~ 164 (272)
T 3b1v_A 154 VVKKAAHTTTS 164 (272)
T ss_dssp HHHHHHHSCTT
T ss_pred HHHHHHHHHhh
Confidence 99999987643
No 207
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.97 E-value=3.8e-06 Score=82.79 Aligned_cols=80 Identities=19% Similarity=0.160 Sum_probs=51.8
Q ss_pred EEEeeCCCCCccchh-hHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCC---HHHHHHhcCCCcccCCCcEEEEEe
Q psy15732 447 VVTLGLDSADSADKE-RLPEALAELTKLIAEKELKDAALLLLANKQDIPGCET---VESITEAFDLYKLCCGRSWHIQAC 522 (550)
Q Consensus 447 ~~~~~~d~~D~~d~~-~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~---~~~i~~~~~l~~~~~~~~~~~~~~ 522 (550)
.+++.+|. +++. ++.....||..+. . .++|++||+||+||.+... .+++.+.+. ...+.++++
T Consensus 82 ~vliV~d~---~~p~~s~~~l~~~l~~~~-~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~------~~g~~~~~~ 148 (302)
T 2yv5_A 82 RVIIVETL---KMPEFNNYLLDNMLVVYE-Y---FKVEPVIVFNKIDLLNEEEKKELERWISIYR------DAGYDVLKV 148 (302)
T ss_dssp EEEEEECS---TTTTCCHHHHHHHHHHHH-H---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHH------HTTCEEEEC
T ss_pred EEEEEEEC---CCCCCCHHHHHHHHHHHH-h---CCCCEEEEEEcccCCCccccHHHHHHHHHHH------HCCCeEEEE
Confidence 34444444 4443 5665667776552 2 4699999999999964311 122222222 224589999
Q ss_pred cccCCCCHHHHHHHHHH
Q psy15732 523 NAQSGEGLHEGLDWLSR 539 (550)
Q Consensus 523 SA~~g~gi~e~f~~l~~ 539 (550)
||++|.||+++|+++..
T Consensus 149 SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 149 SAKTGEGIDELVDYLEG 165 (302)
T ss_dssp CTTTCTTHHHHHHHTTT
T ss_pred ECCCCCCHHHHHhhccC
Confidence 99999999999998864
No 208
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.97 E-value=5.2e-06 Score=82.13 Aligned_cols=80 Identities=18% Similarity=0.137 Sum_probs=52.2
Q ss_pred CccchhhHHHH---HHHHHHHhhccCcCCCeEEEEecCCCCCCC--------CCHHHHHHhcCCCcccCCCcEEEEEecc
Q psy15732 456 DSADKERLPEA---LAELTKLIAEKELKDAALLLLANKQDIPGC--------ETVESITEAFDLYKLCCGRSWHIQACNA 524 (550)
Q Consensus 456 D~~d~~~~~~~---~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--------~~~~~i~~~~~l~~~~~~~~~~~~~~SA 524 (550)
|+++.++|++. ..|+..+... ..++|++|++||+|+... ...+++.+...... -..+.+++|||
T Consensus 89 D~t~~~s~~~l~~~~~~l~~l~~~--~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g---~~~~~~~~tSa 163 (307)
T 3r7w_A 89 DVESTEVLKDIEIFAKALKQLRKY--SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFG---FPNLIGFPTSI 163 (307)
T ss_dssp ETTCSCHHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTT---CCSCEEEECCT
T ss_pred ECCChhhHHHHHHHHHHHHHHHHh--CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcC---CCCeEEEEeee
Confidence 55566666655 4456555433 357999999999999752 11233333332111 01478999999
Q ss_pred cCCCCHHHHHHHHHHHH
Q psy15732 525 QSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 525 ~~g~gi~e~f~~l~~~~ 541 (550)
++ .|+.++|.+++..+
T Consensus 164 ~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 164 WD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp TS-SHHHHHHHHHHHTT
T ss_pred cC-ChHHHHHHHHHHHH
Confidence 99 89999999998754
No 209
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=1.5e-06 Score=62.36 Aligned_cols=41 Identities=20% Similarity=0.615 Sum_probs=35.1
Q ss_pred CCCCCCCCcccccceeecccccCCccccccccccccccccccCCCCcccH
Q psy15732 218 EKPFCSSHPTNIAEFICLEEHCQTSAQYPPLMCFICKDYGRHKTHKHALV 267 (550)
Q Consensus 218 ~~~~C~~H~~~~l~~fC~~~~C~~~~~c~~~iC~~C~~~~~H~~H~~~~l 267 (550)
....|..|.+ .+++||.+|+ .+||..|...++|++|.+.++
T Consensus 17 ~~~~C~~H~e-~L~lfC~~d~--------~~iC~~C~~~~eH~~H~~~~l 57 (57)
T 2egm_A 17 DQGICPKHQE-ALKLFCEVDE--------EAICVVCRESRSHKQHSVVPL 57 (57)
T ss_dssp TTSBCTTTCC-BCCEEETTTT--------EEECHHHHHSHHHHSSCEECC
T ss_pred ccCcChhhCc-eeeEEcCCCC--------cEEecccCCCCCCCCCcEecC
Confidence 4567999975 9999999865 999999998789999998753
No 210
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.95 E-value=8.6e-06 Score=66.15 Aligned_cols=95 Identities=20% Similarity=0.379 Sum_probs=60.1
Q ss_pred Ccceecccccc-ccccCCCCcEE--ecCCCcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHHHHHH
Q psy15732 64 LALECRVCEDI-FLTQGDKVPRL--LHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELIEKIQ 140 (550)
Q Consensus 64 ~~l~C~iC~~~-~~~~~~~~P~~--l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~~~~ 140 (550)
+++.|++|.+. +. + |+. +.|+|+||..|+..++.....+. +..+..+ ++.
T Consensus 2 ee~~C~~C~~~~~~---~--av~~C~~C~~~~C~~Cl~~~h~~~~~~~----~h~l~~~------~~~------------ 54 (101)
T 2jun_A 2 EKVLCQFCDQDPAQ---D--AVKTCVTCEVSYCDECLKATHPNKKPFT----GHRLIEP------IPD------------ 54 (101)
T ss_dssp CCCBCTTCCSSSCC---B--CCEEETTTTEEECHHHHHHHSCSCSSST----TCCBSSC------CCS------------
T ss_pred CCCCCcCCCCCCCC---C--ceEECCcCChHHhHHHCHHHhccCCccC----CCeeecc------ccc------------
Confidence 46899999975 66 6 888 89999999999998443211110 1111100 000
Q ss_pred hccccccccCCcchhhhhcccccccccccCCCCccccccccccccchhhhhHhhhh-hcCCCcccCCcccccCC
Q psy15732 141 TNDEKATESIPLFSAELHIKCDFSLQLHIKCDEDESHIAVLYCTVCASHLCEQCAS-DSHATRTLQKHRRIPLS 213 (550)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~C~~~~~~~A~~~C~~C~~~lC~~C~~-~h~~~~~~~~H~~~~~~ 213 (550)
.. .....|..........||.+|...+|..|.. ..|+ +|.++++.
T Consensus 55 -~~----------------------~~~~~C~~H~~e~l~~fC~~~~~~iC~~C~~~~~H~-----~H~~~~l~ 100 (101)
T 2jun_A 55 -SH----------------------IRGLMCLEHEDEKVNMYCVTDDQLICALCKLVGRHR-----DHQVAALS 100 (101)
T ss_dssp -CC----------------------SSCCCCSSCSSSCCCEEETTTTEEECHHHHHHTTTS-----SSCBCCCC
T ss_pred -cC----------------------ccCCcCcCcCCCcceEECCCCCCccchhcCCCCCcC-----CCCeecCC
Confidence 00 0112377776677899999999999999986 3443 46665543
No 211
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=97.94 E-value=1.3e-05 Score=83.98 Aligned_cols=55 Identities=24% Similarity=0.286 Sum_probs=45.0
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 481 DAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 481 ~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
++|++||+||+||....+.+++.+.++ ..+.++++||++|+||+++|+||.+.+.
T Consensus 350 ~~piivV~NK~DL~~~~~~~~~~~~~~-------~~~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 350 NKRYLVVINKVDVVEKINEEEIKNKLG-------TDRHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp TSSEEEEEEECSSCCCCCHHHHHHHHT-------CSTTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred CCCEEEEEECcccccccCHHHHHHHhc-------CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 689999999999977666677766543 1235889999999999999999998754
No 212
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.93 E-value=8.5e-06 Score=78.42 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=47.3
Q ss_pred HHHHHHHhhccCcCCCeEEEEecCCCCCCC----CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 467 LAELTKLIAEKELKDAALLLLANKQDIPGC----ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 467 ~~~l~~~~~~~~~~~~pili~~NK~Dl~~~----~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
..|+..+.. .++|++|++||+|+... ....++.+.++ +.++++||++|.||+++|+||.+.+.
T Consensus 100 ~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg---------~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 100 LYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG---------IPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC---------SCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHcC---------CCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 345555543 26899999999998321 23455666555 37899999999999999999999875
No 213
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.92 E-value=4.5e-06 Score=82.63 Aligned_cols=87 Identities=16% Similarity=0.132 Sum_probs=55.4
Q ss_pred EEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCC-CCCCHHHHHHhcCCCcccCCCcEEEEEeccc
Q psy15732 447 VVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIP-GCETVESITEAFDLYKLCCGRSWHIQACNAQ 525 (550)
Q Consensus 447 ~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~-~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~ 525 (550)
++++.+|+ ++..++.+...|+..+.. .++|+++|+||+|+. ......+..+.+.- .+ .....++++||+
T Consensus 95 ~il~VvD~---~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~-~~--~~~~~i~~vSA~ 164 (308)
T 3iev_A 95 VILFMIDA---TEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHK-KH--PELTEIVPISAL 164 (308)
T ss_dssp EEEEEEET---TTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHH-HC--TTCCCEEECBTT
T ss_pred EEEEEEeC---CCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHH-hc--cCCCeEEEEeCC
Confidence 44445554 344445555556665533 358999999999996 33222222222220 00 123578999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy15732 526 SGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 526 ~g~gi~e~f~~l~~~~~~ 543 (550)
+|.||+++|+||.+.+..
T Consensus 165 ~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 165 KGANLDELVKTILKYLPE 182 (308)
T ss_dssp TTBSHHHHHHHHHHHSCB
T ss_pred CCCCHHHHHHHHHHhCcc
Confidence 999999999999998753
No 214
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.90 E-value=5.5e-06 Score=86.72 Aligned_cols=63 Identities=14% Similarity=0.061 Sum_probs=45.4
Q ss_pred CCCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
.++|++||+||+|+... ...+++.+.+.- .+.......++++||++|.||+++|++|.+.+..
T Consensus 305 ~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 305 AGKAVVIVVNKWDAVDKDESTMKEFEENIRD-HFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp TTCEEEEEEECGGGSCCCSSHHHHHHHHHHH-HCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred cCCCEEEEEEChhcCCCchHHHHHHHHHHHH-hcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence 45899999999999643 344555554431 1101224579999999999999999999987754
No 215
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.87 E-value=5.3e-06 Score=79.73 Aligned_cols=51 Identities=14% Similarity=0.116 Sum_probs=41.0
Q ss_pred CCeEEEEecCCCCCCC----CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHH
Q psy15732 481 DAALLLLANKQDIPGC----ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQ 540 (550)
Q Consensus 481 ~~pili~~NK~Dl~~~----~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~ 540 (550)
++|++|++||+|+... ...+.+.+.++ +.++++||++|.||+++|+||.+.
T Consensus 110 ~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg---------~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 110 GKPVVVALNMMDIAEHRGISIDTEKLESLLG---------CSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp CSCEEEEEECHHHHHHTTCEECHHHHHHHHC---------SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred CCCEEEEEEChhcCCcCCcHHHHHHHHHHcC---------CCEEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999998432 24555666555 378999999999999999999875
No 216
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.77 E-value=7.9e-06 Score=79.40 Aligned_cols=72 Identities=15% Similarity=0.150 Sum_probs=50.5
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC----CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC----ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLH 531 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~----~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~ 531 (550)
|+++.+++..+..++.++ ++|++||+||+|+... ...+.+.+.++ +.++++||++|.||+
T Consensus 94 D~~~~~~~~~~~~~l~~~-------~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg---------~~~i~~SA~~g~gi~ 157 (274)
T 3i8s_A 94 DASNLERNLYLTLQLLEL-------GIPCIVALNMLDIAEKQNIRIEIDALSARLG---------CPVIPLVSTRGRGIE 157 (274)
T ss_dssp EGGGHHHHHHHHHHHHHH-------TCCEEEEEECHHHHHHTTEEECHHHHHHHHT---------SCEEECCCGGGHHHH
T ss_pred cCCChHHHHHHHHHHHhc-------CCCEEEEEECccchhhhhHHHHHHHHHHhcC---------CCEEEEEcCCCCCHH
Confidence 344455554444444433 5899999999998432 23455555555 368999999999999
Q ss_pred HHHHHHHHHHHH
Q psy15732 532 EGLDWLSRQLIA 543 (550)
Q Consensus 532 e~f~~l~~~~~~ 543 (550)
++|+||.+.+..
T Consensus 158 el~~~i~~~~~~ 169 (274)
T 3i8s_A 158 ALKLAIDRYKAN 169 (274)
T ss_dssp HHHHHHHTCCCC
T ss_pred HHHHHHHHHHhc
Confidence 999999886643
No 217
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.76 E-value=9.1e-07 Score=82.69 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=40.4
Q ss_pred EEEEEeeCCCCCccchhhHHHHHHHHHHHhhccC---cCCCeEEEEecCCCCCCCCCHH
Q psy15732 445 MRVVTLGLDSADSADKERLPEALAELTKLIAEKE---LKDAALLLLANKQDIPGCETVE 500 (550)
Q Consensus 445 ~~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~---~~~~pili~~NK~Dl~~~~~~~ 500 (550)
...+++.+|.. .+.++|.....|+.+++.... ..++|++||+||+|+.......
T Consensus 83 ~~~~i~v~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 139 (218)
T 1nrj_B 83 VKGLIFMVDST--VDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPS 139 (218)
T ss_dssp EEEEEEEEETT--SCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred CCEEEEEEECC--CChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH
Confidence 45677777764 256778888889988876532 2679999999999998776544
No 218
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.70 E-value=2.3e-05 Score=75.39 Aligned_cols=92 Identities=13% Similarity=-0.001 Sum_probs=54.9
Q ss_pred EEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcC-C-----------------
Q psy15732 447 VVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFD-L----------------- 508 (550)
Q Consensus 447 ~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~-l----------------- 508 (550)
++++.+|+.+..+...+.....+....... .++|++||+||+|+......+++.+.+. +
T Consensus 140 ~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~ 216 (262)
T 1yrb_A 140 LVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLM 216 (262)
T ss_dssp EEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHH
T ss_pred eEEeccchhhhcCHHHHHHHHHHHHHHhcc---cCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchh
Confidence 344455665555555554433322222222 3589999999999865432222333221 0
Q ss_pred --------CcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 509 --------YKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 509 --------~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
..+ ...+.++++||++|+||+++|+||.+.+..
T Consensus 217 ~~~l~~~~~~~--~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 217 AYKMCSMMTEV--LPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHH--SCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHh--cCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 011 122468999999999999999999988754
No 219
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.70 E-value=2.6e-05 Score=80.18 Aligned_cols=81 Identities=12% Similarity=0.073 Sum_probs=52.7
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCC----HHHHHHhcCCCcccCCCcEEEEEecccCCCCHH
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCET----VESITEAFDLYKLCCGRSWHIQACNAQSGEGLH 531 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~----~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~ 531 (550)
|+++..++....+|+..+... ...|++|++||+|+.+... .+++.+.+.- + ....+.++++||++|.||+
T Consensus 107 da~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~--~-~~~~~~ii~vSA~~g~gi~ 180 (403)
T 3sjy_A 107 AANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG--T-WAENVPIIPVSALHKINID 180 (403)
T ss_dssp ETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT--S-TTTTCCEEECBTTTTBSHH
T ss_pred ECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHh--h-CCCCCEEEEEECCCCcChH
Confidence 444444455566666544221 2258999999999965421 2233333321 1 1346789999999999999
Q ss_pred HHHHHHHHHHH
Q psy15732 532 EGLDWLSRQLI 542 (550)
Q Consensus 532 e~f~~l~~~~~ 542 (550)
++|++|.+.+.
T Consensus 181 ~L~~~l~~~l~ 191 (403)
T 3sjy_A 181 SLIEGIEEYIK 191 (403)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHhCC
Confidence 99999998764
No 220
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.65 E-value=1.9e-05 Score=77.77 Aligned_cols=84 Identities=13% Similarity=0.046 Sum_probs=52.5
Q ss_pred EEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCC-HHHHHHhcCCCcccCCCcEEEEEecc
Q psy15732 446 RVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCET-VESITEAFDLYKLCCGRSWHIQACNA 524 (550)
Q Consensus 446 ~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~-~~~i~~~~~l~~~~~~~~~~~~~~SA 524 (550)
..+++.+|+.+.- + ....|+.+.+... ..++|+++|+||+|+..... ..+..+.+ . ....++++||
T Consensus 88 d~il~VvD~~~~~---~--~~~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-~------~~~~~~~iSA 154 (301)
T 1wf3_A 88 NAVVWVVDLRHPP---T--PEDELVARALKPL-VGKVPILLVGNKLDAAKYPEEAMKAYHEL-L------PEAEPRMLSA 154 (301)
T ss_dssp SEEEEEEETTSCC---C--HHHHHHHHHHGGG-TTTSCEEEEEECGGGCSSHHHHHHHHHHT-S------TTSEEEECCT
T ss_pred CEEEEEEECCCCC---C--hHHHHHHHHHHhh-cCCCCEEEEEECcccCCchHHHHHHHHHh-c------CcCcEEEEeC
Confidence 3455555554322 1 1235554444332 24689999999999975422 22222222 1 1236899999
Q ss_pred cCCCCHHHHHHHHHHHHH
Q psy15732 525 QSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 525 ~~g~gi~e~f~~l~~~~~ 542 (550)
++|.||+++|+||.+.+.
T Consensus 155 ~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 155 LDERQVAELKADLLALMP 172 (301)
T ss_dssp TCHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHhcc
Confidence 999999999999988664
No 221
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.65 E-value=3.3e-05 Score=80.29 Aligned_cols=88 Identities=15% Similarity=0.058 Sum_probs=55.7
Q ss_pred EEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCC--CHHHHHHhcCCCcccCCCcEEEEEecc
Q psy15732 447 VVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCE--TVESITEAFDLYKLCCGRSWHIQACNA 524 (550)
Q Consensus 447 ~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~SA 524 (550)
++++.+|..+. .+++.. .|+..+.. .++|++|++||+|+.... ..+++.+.+.. .+.......++++||
T Consensus 260 ~~llv~D~~~~---~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~SA 330 (436)
T 2hjg_A 260 VVAVVLDGEEG---IIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRD-HFQFLDYAPILFMSA 330 (436)
T ss_dssp EEEEEEETTTC---CCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHH-HCGGGTTSCEEECCT
T ss_pred EEEEEEcCCcC---CcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHH-hcccCCCCCEEEEec
Confidence 45556665443 334332 45555532 468999999999996542 23444333220 010123457899999
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q psy15732 525 QSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 525 ~~g~gi~e~f~~l~~~~~~ 543 (550)
++|.||+++|++|.+.+..
T Consensus 331 ~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 331 LTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp TTCTTGGGHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHH
Confidence 9999999999999987754
No 222
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.62 E-value=6.8e-05 Score=78.11 Aligned_cols=55 Identities=16% Similarity=0.113 Sum_probs=41.4
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHHh
Q psy15732 482 AALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 482 ~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~~ 544 (550)
.|++||+||+|+.+..... .+..+ ...+.++++||++|.||++.|+||.+.+...
T Consensus 331 ~piivV~NK~Dl~~~~~~~------~~~~~--~~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 331 RPLILVMNKIDLVEKQLIT------SLEYP--ENITQIVHTAAAQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp SCEEEEEECTTSSCGGGST------TCCCC--TTCCCEEEEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred CcEEEEEECCCCCcchhhH------HHHHh--ccCCcEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 6999999999997542211 11122 1345789999999999999999999988654
No 223
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.62 E-value=8.3e-05 Score=79.83 Aligned_cols=57 Identities=25% Similarity=0.460 Sum_probs=43.1
Q ss_pred CCCeEEEEecCCCCCCCCC---HHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCET---VESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~---~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
.++|+++++||+|++++.. .+++.+.+++. ...++++||++|.||+++|+||.+.+.
T Consensus 122 ~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~------~~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 122 MDLEVVPVLNKIDLPAADPERVAEEIEDIVGID------ATDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCC------CTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred CCCCEEEeeeccCcccccHHHHHHHHHHHhCCC------cceEEEeecccCCCchhHHHHHhhcCC
Confidence 3589999999999987532 23444555432 124789999999999999999998764
No 224
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.62 E-value=1.8e-05 Score=74.20 Aligned_cols=58 Identities=14% Similarity=0.276 Sum_probs=44.1
Q ss_pred CeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 482 AALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 482 ~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
.|++|++||+|+... ...+++.+.+.. + ...+.++++||++|.||+++|+||.+.+..
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~--~--~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKR--I--NPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHH--H--CTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHH--h--CCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 577999999999542 455666555431 1 234589999999999999999999988754
No 225
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.60 E-value=2.8e-05 Score=60.87 Aligned_cols=46 Identities=24% Similarity=0.486 Sum_probs=37.8
Q ss_pred eeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCccc
Q psy15732 67 ECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTP 117 (550)
Q Consensus 67 ~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~ 117 (550)
.|++|.-++.. - .+++||.|.||..|+..++.. ....||.|+.++.
T Consensus 3 fC~~C~~Pi~i--y--gRmIPCkHvFCydCa~~~~~~-~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKV--Y--GRMIPCKHVFCYDCAILHEKK-GDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSE--E--EEEETTCCEEEHHHHHHHHHT-TCCBCTTTCCBCS
T ss_pred ecCccCCCeEE--E--eeeccccccHHHHHHHHHHhc-cCCCCcCcCCeee
Confidence 68999999884 3 678899999999999988653 4457999998875
No 226
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.60 E-value=0.0001 Score=79.04 Aligned_cols=57 Identities=23% Similarity=0.362 Sum_probs=42.8
Q ss_pred CCCeEEEEecCCCCCCCCC---HHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCET---VESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~---~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
.++|+++++||+|++++.. .+++.+.+++. ...++++||++|.||+++|+||.+.+.
T Consensus 124 ~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~------~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 124 QDLVIIPVINKIDLPSADVDRVKKQIEEVLGLD------PEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp TTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCC------GGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCCCEEEEEeccCccccCHHHHHHHHHHhhCCC------cccEEEEEeecCCCchHHHHHHHHhcc
Confidence 3689999999999987632 23344444432 224789999999999999999998774
No 227
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.58 E-value=0.00022 Score=71.94 Aligned_cols=92 Identities=17% Similarity=0.127 Sum_probs=53.8
Q ss_pred EEEeeCCCCCcc--chhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhc-CC-CcccCCCcEEEEEe
Q psy15732 447 VVTLGLDSADSA--DKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAF-DL-YKLCCGRSWHIQAC 522 (550)
Q Consensus 447 ~~~~~~d~~D~~--d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~-~l-~~~~~~~~~~~~~~ 522 (550)
++++.+|..+.. ..+.+..+..+|..+ ...++|+++|+||+|+.... .....+.+ .+ ..+ ....+.++++
T Consensus 260 ~il~VvD~s~~~~~~~~~~~~~~~~L~~l----~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l-~~~~~~~~~~ 333 (364)
T 2qtf_A 260 ALILVIDSTFSENLLIETLQSSFEILREI----GVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKEL-YSPIFDVIPI 333 (364)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHHHH----TCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHH-CSCEEEEEEC
T ss_pred EEEEEEECCCCcchHHHHHHHHHHHHHHh----CcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHh-cCCCCcEEEE
Confidence 445555554332 123333334444433 33568999999999996532 22211111 00 001 0124578999
Q ss_pred cccCCCCHHHHHHHHHHHHHHh
Q psy15732 523 NAQSGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 523 SA~~g~gi~e~f~~l~~~~~~~ 544 (550)
||++|.|+++.|+||.+.+...
T Consensus 334 SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 334 SALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHHHhccc
Confidence 9999999999999999987654
No 228
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.58 E-value=8.7e-05 Score=76.38 Aligned_cols=58 Identities=16% Similarity=0.124 Sum_probs=38.4
Q ss_pred CeEEEEecCCCCCCCC----CHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 482 AALLLLANKQDIPGCE----TVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 482 ~pili~~NK~Dl~~~~----~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
.|++|++||+|+.... ..+++.+.+.- + ....+.++++||++|+||+++|+||.+.+.
T Consensus 136 ~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~--~-~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 136 DKIIIVQNKIDLVDEKQAEENYEQIKEFVKG--T-IAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp CCEEEEEECTTSSCTTTTTTHHHHHHHHHTT--S-TTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred CeEEEEEEccCCCCHHHHHHHHHHHHHHHhh--c-CCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 4899999999996542 34566666551 1 124678999999999999999999998764
No 229
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.54 E-value=7.2e-05 Score=56.29 Aligned_cols=52 Identities=17% Similarity=0.436 Sum_probs=40.7
Q ss_pred CcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
..-.|.||.+.+... + +-..|+|.|...||.+|+.......||.||......
T Consensus 14 ~i~~C~IC~~~i~~g-~---~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 14 AVKICNICHSLLIQG-Q---SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSCBCSSSCCBCSSS-E---ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCcCcchhhHcccC-C---ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 456899999999821 2 112899999999999999855447899999987643
No 230
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.53 E-value=4.7e-05 Score=77.12 Aligned_cols=84 Identities=19% Similarity=0.185 Sum_probs=51.9
Q ss_pred EEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCC-CCCHHHHHHhcC--CCcccCCCcEEEEEec
Q psy15732 447 VVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPG-CETVESITEAFD--LYKLCCGRSWHIQACN 523 (550)
Q Consensus 447 ~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~-~~~~~~i~~~~~--l~~~~~~~~~~~~~~S 523 (550)
++++++|..| +. ..|..+|.+++ .++|++||+||+||.. ....+++.+++. .... .-+...++.+|
T Consensus 72 ~il~VvD~~d---~~--~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~-g~~~~~v~~iS 140 (368)
T 3h2y_A 72 LVVKIVDIFD---FN--GSWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQL-GLKPEDVFLIS 140 (368)
T ss_dssp EEEEEEETTS---HH--HHCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHT-TCCCSEEEECC
T ss_pred EEEEEEECCC---Cc--ccHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHc-CCCcccEEEEe
Confidence 4555566543 21 23334444442 3689999999999943 344445544432 0001 01223789999
Q ss_pred ccCCCCHHHHHHHHHHHH
Q psy15732 524 AQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 524 A~~g~gi~e~f~~l~~~~ 541 (550)
|++|.||++++++|.+..
T Consensus 141 A~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 141 AAKGQGIAELADAIEYYR 158 (368)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHhhhhhhc
Confidence 999999999999997754
No 231
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.52 E-value=0.00012 Score=70.80 Aligned_cols=68 Identities=18% Similarity=0.211 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhccCcCCCeEEEEecCCCCCC----CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHH
Q psy15732 465 EALAELTKLIAEKELKDAALLLLANKQDIPG----CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQ 540 (550)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~----~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~ 540 (550)
....|+..+... ..+|++|++||+|+.. ......+.+.+++ .++++||++|.||+++|+||...
T Consensus 96 ~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~---------~~~~~Sa~~g~gi~~l~~~i~~~ 163 (271)
T 3k53_A 96 RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGV---------PVIPTNAKKGEGVEELKRMIALM 163 (271)
T ss_dssp HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSS---------CEEECBGGGTBTHHHHHHHHHHH
T ss_pred hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcCC---------cEEEEEeCCCCCHHHHHHHHHHH
Confidence 344455555432 2389999999999732 2346666666663 68899999999999999999998
Q ss_pred HHHh
Q psy15732 541 LIAA 544 (550)
Q Consensus 541 ~~~~ 544 (550)
+...
T Consensus 164 ~~~~ 167 (271)
T 3k53_A 164 AEGK 167 (271)
T ss_dssp HHTC
T ss_pred Hhcc
Confidence 8654
No 232
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.52 E-value=9.3e-05 Score=78.23 Aligned_cols=87 Identities=14% Similarity=0.098 Sum_probs=55.2
Q ss_pred EEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCC---CHHHHHHh-cCCCcccCCCcEEEEE
Q psy15732 446 RVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCE---TVESITEA-FDLYKLCCGRSWHIQA 521 (550)
Q Consensus 446 ~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~---~~~~i~~~-~~l~~~~~~~~~~~~~ 521 (550)
.++++.+|+.|...+ .+.+++..+. ..++|++|++||+|+++.. ...++.+. +....+ ...+.+++
T Consensus 77 D~vILVVDa~dg~~~----qt~e~l~~~~----~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~--~~~~~iv~ 146 (537)
T 3izy_P 77 DIVILVVAADDGVMK----QTVESIQHAK----DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDY--GGDVQAVH 146 (537)
T ss_dssp SSCEEECBSSSCCCH----HHHHHHHHHH----TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCS--SSSEEECC
T ss_pred CEEEEEEECCCCccH----HHHHHHHHHH----HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhc--CCCceEEE
Confidence 345666666554333 3334444442 2468999999999996532 12223221 111222 34679999
Q ss_pred ecccCCCCHHHHHHHHHHHHH
Q psy15732 522 CNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 522 ~SA~~g~gi~e~f~~l~~~~~ 542 (550)
+||++|.||+++|+||...+.
T Consensus 147 vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 147 VSALTGENMMALAEATIALAE 167 (537)
T ss_dssp CCSSSSCSSHHHHHHHHHHHT
T ss_pred EECCCCCCchhHHHHHHHhhh
Confidence 999999999999999998764
No 233
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.52 E-value=0.00019 Score=77.03 Aligned_cols=90 Identities=17% Similarity=0.083 Sum_probs=56.6
Q ss_pred EEEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCC--------------HH----------
Q psy15732 445 MRVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCET--------------VE---------- 500 (550)
Q Consensus 445 ~~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~--------------~~---------- 500 (550)
..++++.+|+.|.-.+.+++.+. ++. . .++|++|++||+|+.+... .+
T Consensus 94 aD~aILVvDa~~Gv~~qT~e~l~-~l~----~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i 165 (594)
T 1g7s_A 94 ADLAILIVDINEGFKPQTQEALN-ILR----M---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKV 165 (594)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHH-HHH----H---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCccHhHHHHHH-HHH----H---cCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHH
Confidence 34566667766654466665443 222 1 4689999999999964321 01
Q ss_pred -HHHHhc---CCC-----ccc-CCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 501 -SITEAF---DLY-----KLC-CGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 501 -~i~~~~---~l~-----~~~-~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
++.+.+ ++. .+. ....+.++++||++|.||+++|+||...+.
T Consensus 166 ~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 166 YELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 122222 111 000 035679999999999999999999998775
No 234
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.47 E-value=3e-05 Score=72.34 Aligned_cols=59 Identities=24% Similarity=0.338 Sum_probs=44.7
Q ss_pred CCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 481 DAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 481 ~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
++|++|++||+|+.+. ...+++.+.+.. + ...+.++++||++|.||+++|+||.+.+..
T Consensus 154 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~--~--~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 154 RVADLIVINKVALAEAVGADVEKMKADAKL--I--NPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HTCSEEEEECGGGHHHHTCCHHHHHHHHHH--H--CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred hcCCEEEEecccCCcchhhHHHHHHHHHHH--h--CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999542 456666665531 1 234689999999999999999999988754
No 235
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.45 E-value=6.9e-05 Score=76.84 Aligned_cols=79 Identities=20% Similarity=0.162 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHHhhc-cCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHH
Q psy15732 461 ERLPEALAELTKLIAE-KELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSR 539 (550)
Q Consensus 461 ~~~~~~~~~l~~~~~~-~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~ 539 (550)
..+.+...|..++... ..+.+.|.+|++||+|+......+++.+.+. ...+.++.+||++|+||+++|+||.+
T Consensus 248 ~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~------~~g~~vi~iSA~~g~gi~eL~~~i~~ 321 (416)
T 1udx_A 248 EPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALA------REGLAVLPVSALTGAGLPALKEALHA 321 (416)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHH------TTTSCEEECCTTTCTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHH------hcCCeEEEEECCCccCHHHHHHHHHH
Confidence 3444444444444322 1234579999999999976422333434332 33567899999999999999999999
Q ss_pred HHHHhc
Q psy15732 540 QLIAAG 545 (550)
Q Consensus 540 ~~~~~~ 545 (550)
.+....
T Consensus 322 ~l~~~~ 327 (416)
T 1udx_A 322 LVRSTP 327 (416)
T ss_dssp HHHTSC
T ss_pred HHHhcc
Confidence 987643
No 236
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=97.41 E-value=6.2e-05 Score=57.57 Aligned_cols=44 Identities=23% Similarity=0.539 Sum_probs=37.3
Q ss_pred ccCCCCccc---cccccccccchhhhhHhhhhh-cCCCcccCCccccc
Q psy15732 168 HIKCDEDES---HIAVLYCTVCASHLCEQCASD-SHATRTLQKHRRIP 211 (550)
Q Consensus 168 ~~~C~~~~~---~~A~~~C~~C~~~lC~~C~~~-h~~~~~~~~H~~~~ 211 (550)
.+.|+.|.. ..|+.+|..|..+||+.|... |...+.++.|.++.
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~~ 77 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIE 77 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCSC
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcccC
Confidence 456777753 789999999999999999997 77778999998864
No 237
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.33 E-value=9.7e-05 Score=76.79 Aligned_cols=57 Identities=18% Similarity=0.154 Sum_probs=40.1
Q ss_pred CCeEEEEecCCCCCCCCCHHHH-HHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHHh
Q psy15732 481 DAALLLLANKQDIPGCETVESI-TEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 481 ~~pili~~NK~Dl~~~~~~~~i-~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~~ 544 (550)
++|++||+||+|+.... ..++ .+...+ .+ ..++++||++|.||.++|+||.+.+...
T Consensus 110 ~~p~ilv~NK~D~~~~~-~~~~~~~~~~l-g~-----~~~~~iSA~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 110 TVDTILVANKAENLREF-EREVKPELYSL-GF-----GEPIPVSAEHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp TCCEEEEEESCCSHHHH-HHHTHHHHGGG-SS-----CSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCcccc-HHHHHHHHHhc-CC-----CCEEEEeccCCCCHHHHHHHHHHhcccc
Confidence 58999999999985321 1222 232221 11 1368899999999999999999988653
No 238
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.31 E-value=0.00015 Score=76.09 Aligned_cols=85 Identities=20% Similarity=0.304 Sum_probs=52.0
Q ss_pred EEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCc-ccC--CCcEEEEEec
Q psy15732 447 VVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYK-LCC--GRSWHIQACN 523 (550)
Q Consensus 447 ~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~-~~~--~~~~~~~~~S 523 (550)
++++.+|..|...+.+++. +..+. ..++|++|++||+|++++- .+.+...+.... +.. ...+.++++|
T Consensus 77 ~aILVVda~~g~~~qT~e~----l~~~~----~~~vPiIVviNKiDl~~~~-~~~v~~~l~~~~~~~~~~~~~~~~v~vS 147 (501)
T 1zo1_I 77 IVVLVVAADDGVMPQTIEA----IQHAK----AAQVPVVVAVNKIDKPEAD-PDRVKNELSQYGILPEEWGGESQFVHVS 147 (501)
T ss_dssp SEEEEEETTTBSCTTTHHH----HHHHH----HTTCCEEEEEECSSSSTTC-CCCTTCCCCCCCCCTTCCSSSCEEEECC
T ss_pred EEEEEeecccCccHHHHHH----HHHHH----hcCceEEEEEEeccccccC-HHHHHHHHHHhhhhHHHhCCCccEEEEe
Confidence 3555566555444444433 33221 2468999999999997531 122333322111 110 2347899999
Q ss_pred ccCCCCHHHHHHHHHHH
Q psy15732 524 AQSGEGLHEGLDWLSRQ 540 (550)
Q Consensus 524 A~~g~gi~e~f~~l~~~ 540 (550)
|++|.||+++|+||...
T Consensus 148 AktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 148 AKAGTGIDELLDAILLQ 164 (501)
T ss_dssp TTTCTTCTTHHHHTTTT
T ss_pred eeeccCcchhhhhhhhh
Confidence 99999999999999753
No 239
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.31 E-value=0.00012 Score=77.02 Aligned_cols=87 Identities=15% Similarity=0.237 Sum_probs=54.5
Q ss_pred EEEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCH----HHHHHhcCCC-cccCCCcEEE
Q psy15732 445 MRVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETV----ESITEAFDLY-KLCCGRSWHI 519 (550)
Q Consensus 445 ~~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~----~~i~~~~~l~-~~~~~~~~~~ 519 (550)
..++++.+|+.+.-...+++ ++..+ .. .++|++|++||+|+.+.... +++.+.+... .+ ..+.+
T Consensus 97 aD~~ilVvda~~g~~~qt~e----~l~~~-~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~---~~~~i 165 (482)
T 1wb1_A 97 IDLALIVVDAKEGPKTQTGE----HMLIL-DH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNL---KNSSI 165 (482)
T ss_dssp CCEEEEEEETTTCSCHHHHH----HHHHH-HH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSG---GGCCE
T ss_pred CCEEEEEEecCCCccHHHHH----HHHHH-HH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhccc---ccceE
Confidence 34566666665433333333 33322 11 35899999999999753222 2233333211 11 25689
Q ss_pred EEecccCCCCHHHHHHHHHHHHH
Q psy15732 520 QACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 520 ~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
+++||++|+||+++|+||.+.+.
T Consensus 166 i~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 166 IPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999999999774
No 240
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.31 E-value=0.00022 Score=73.36 Aligned_cols=58 Identities=14% Similarity=0.130 Sum_probs=43.0
Q ss_pred CeEEEEecCCCCCCCC----CHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 482 AALLLLANKQDIPGCE----TVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 482 ~pili~~NK~Dl~~~~----~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
.|++|++||+|+.+.. ..+++.+.+.- . ....+.++++||++|.||+++|+||.+.+.
T Consensus 138 ~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~--~-~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 138 KNIIIAQNKIELVDKEKALENYRQIKEFIEG--T-VAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp CCEEEEEECGGGSCHHHHHHHHHHHHHHHTT--S-TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CcEEEEEECccCCCHHHHHHHHHHHHHHHHh--c-CcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 5899999999997532 23345554441 1 024678999999999999999999998664
No 241
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.28 E-value=0.0001 Score=76.59 Aligned_cols=82 Identities=18% Similarity=0.251 Sum_probs=50.2
Q ss_pred EEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEeccc
Q psy15732 446 RVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQ 525 (550)
Q Consensus 446 ~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~ 525 (550)
.++++.+|+.+... + ...|+.+++.. .++|++||+||+|+.... .++.+...+ .+ -.++++||+
T Consensus 84 d~il~vvD~~~~~~---~--~d~~~~~~l~~---~~~pvilv~NK~D~~~~~--~~~~~~~~l-g~-----~~~~~iSA~ 147 (436)
T 2hjg_A 84 DVIIFMVNGREGVT---A--ADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFYSL-GF-----GEPYPISGT 147 (436)
T ss_dssp SEEEEEEETTTCSC---H--HHHHHHHHHTT---CCSCEEEEEECCCC-------CCCSSGGG-SS-----CCCEECBTT
T ss_pred CEEEEEEeCCCCCC---H--HHHHHHHHHHH---cCCCEEEEEECccCccch--hhHHHHHHc-CC-----CCeEEEeCc
Confidence 45666666654322 1 23455555433 468999999999986431 111111111 01 157899999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy15732 526 SGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 526 ~g~gi~e~f~~l~~~~~~ 543 (550)
+|.||.++|+||.+.+..
T Consensus 148 ~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 148 HGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp TTBTHHHHHHHHHHTGGG
T ss_pred CCCChHHHHHHHHHhcCc
Confidence 999999999999988753
No 242
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.22 E-value=0.0001 Score=74.66 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=42.7
Q ss_pred CCCeEEEEecCCCCCC-CCCHHHHHHhcC--CCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPG-CETVESITEAFD--LYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~-~~~~~~i~~~~~--l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
.+.|++||+||+||.. ....+.+.+++. +... ..+...++.+||++|.|+++++++|.+...
T Consensus 97 ~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~-g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 97 ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEEL-GLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTT-TCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHc-CCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3689999999999954 344455554432 1111 012247899999999999999999977553
No 243
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.21 E-value=0.00023 Score=73.95 Aligned_cols=63 Identities=17% Similarity=0.143 Sum_probs=43.2
Q ss_pred CCCeEEEEecCCCCCCC--CCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGC--ETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
.++|++|++||.|+... ...+++.+.+.. .+.......++++||++|.||+++|++|.+.+..
T Consensus 291 ~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 291 RGRASVVVFNKWDLVVHREKRYDEFTKLFRE-KLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp TTCEEEEEEECGGGSTTGGGCHHHHHHHHHH-HCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEECccCCCchhhHHHHHHHHHHH-HhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999643 234444332210 0001223478999999999999999999987754
No 244
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.21 E-value=0.0003 Score=69.15 Aligned_cols=86 Identities=14% Similarity=0.161 Sum_probs=52.9
Q ss_pred eEEEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcE-EEEEe
Q psy15732 444 EMRVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSW-HIQAC 522 (550)
Q Consensus 444 ~~~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~-~~~~~ 522 (550)
...++++.+|+.+ +.....|+.+.+.. .++|+++++||+|+... ...+.+.+. .+....++ .++++
T Consensus 88 ~~D~vl~Vvd~~~------~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~--~~~~~~~l~--~l~~~~~~~~~i~i 154 (301)
T 1ega_A 88 DVELVIFVVEGTR------WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQE--KADLLPHLQ--FLASQMNFLDIVPI 154 (301)
T ss_dssp CEEEEEEEEETTC------CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCC--HHHHHHHHH--HHHTTSCCSEEEEC
T ss_pred cCCEEEEEEeCCC------CCHHHHHHHHHHHh---cCCCEEEEEECcccCcc--HHHHHHHHH--HHHHhcCcCceEEE
Confidence 3455666666644 22223455544432 35899999999999752 222222211 00011223 68999
Q ss_pred cccCCCCHHHHHHHHHHHHH
Q psy15732 523 NAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 523 SA~~g~gi~e~f~~l~~~~~ 542 (550)
||++|.|+++.+++|...+.
T Consensus 155 SA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 155 SAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp CTTTTTTHHHHHHHHHTTCC
T ss_pred ECCCCCCHHHHHHHHHHhCC
Confidence 99999999999999987653
No 245
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.20 E-value=0.00014 Score=52.42 Aligned_cols=51 Identities=20% Similarity=0.343 Sum_probs=40.6
Q ss_pred CCcceeccccccccccCCCCcEEecCC--C---cchhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLLHCG--H---TVCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l~Cg--H---~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
++.-.|.||+.... + |.++||. + .|...||.+|+...+...||+|+..+..
T Consensus 4 ~~~~~CrIC~~~~~---~--~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELG---N--ERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECS---C--CCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCC---C--ceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 35678999998765 7 7778865 4 8999999999875456789999998754
No 246
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.14 E-value=0.0001 Score=74.38 Aligned_cols=60 Identities=13% Similarity=0.116 Sum_probs=34.8
Q ss_pred CCCeEEEEecCCCCCCCCCH----HHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhcC
Q psy15732 480 KDAALLLLANKQDIPGCETV----ESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIAAGV 546 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~~----~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~~~~ 546 (550)
.++|+++|+||+|+...... +++.+.+. ..++.|+++||++|.| +++|.||...+....|
T Consensus 173 ~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~------~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 173 NKVNIVPVIAKADTLTLKERERLKKRILDEIE------EHNIKIYHLPDAESDE-DEDFKEQTRLLKASIP 236 (361)
T ss_dssp S-SCEEEEEECCSSSCHHHHHHHHHHHHHHTT------CC-CCSCCCC----------CHHHHHHHHHTCS
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH------HCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence 46899999999999653211 23333333 4567899999999999 9999999999876643
No 247
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.13 E-value=0.00095 Score=70.69 Aligned_cols=26 Identities=23% Similarity=0.056 Sum_probs=23.6
Q ss_pred EEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 517 WHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 517 ~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
.++|.+||++|.||+++|++|.+.+.
T Consensus 251 ~PV~~gSA~~~~GV~~Lld~i~~~~p 276 (528)
T 3tr5_A 251 TPIFFGSAINNFGVGELLDAFVKEAP 276 (528)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHSC
T ss_pred eEEEeccccCCccHHHHHHHHHHhCC
Confidence 47899999999999999999998774
No 248
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.10 E-value=0.00023 Score=69.64 Aligned_cols=59 Identities=10% Similarity=0.036 Sum_probs=40.2
Q ss_pred CCCeEEEEecCCCCCCCCC--HHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCET--VESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~--~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
.+.|+++|+||+|+.+... .+.+...+ ..+. .....++++||++|.||+++|+||.+..
T Consensus 191 ~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~--~~~~-~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 191 QGQRTIGVITKLDLMDEGTDARDVLENKL--LPLR-RGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp TCSSEEEEEECGGGSCTTCCCHHHHTTCS--SCCT-TCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred CCCeEEEEEEccccCCCCchHHHHHhCCc--CcCC-CCcEEEECCChhhccccccHHHHHHHHH
Confidence 4689999999999965322 22222211 1110 1224789999999999999999998754
No 249
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.99 E-value=0.00014 Score=73.28 Aligned_cols=62 Identities=21% Similarity=0.174 Sum_probs=42.1
Q ss_pred CCeEEEEecCCCCCCCCCH----HHHHHhcCCCcccCCC--cEEEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 481 DAALLLLANKQDIPGCETV----ESITEAFDLYKLCCGR--SWHIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 481 ~~pili~~NK~Dl~~~~~~----~~i~~~~~l~~~~~~~--~~~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
++|++||+||+|+.+.... .++.+.+.+... ... ...++++||++|+||+++++||.+.+..
T Consensus 217 ~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 217 ELADIVVVNKADGEHHKEARLAARELSAAIRLIYP-REALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp GGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHST-TCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred hcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccc-cccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4699999999999643222 233333321111 012 2468999999999999999999988754
No 250
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.98 E-value=0.00049 Score=65.89 Aligned_cols=90 Identities=17% Similarity=0.292 Sum_probs=51.1
Q ss_pred EEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHH------------HHHhcCCCcccC
Q psy15732 446 RVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVES------------ITEAFDLYKLCC 513 (550)
Q Consensus 446 ~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~------------i~~~~~l~~~~~ 513 (550)
..+++.+|+.+.++ ....+..|+.++.... ....+++|+.||+|+.+. ...+ +.+.++
T Consensus 107 d~il~V~d~~~~~~--~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~------ 176 (260)
T 2xtp_A 107 HVLLLVTQLGRYTS--QDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACG------ 176 (260)
T ss_dssp SEEEEEEETTCCCH--HHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTT------
T ss_pred cEEEEEEeCCCCCH--HHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhC------
Confidence 34555566543111 1223345666554321 122345555569999754 3333 223333
Q ss_pred CCc--EEEEEecccCCCCHHHHHHHHHHHHHHhc
Q psy15732 514 GRS--WHIQACNAQSGEGLHEGLDWLSRQLIAAG 545 (550)
Q Consensus 514 ~~~--~~~~~~SA~~g~gi~e~f~~l~~~~~~~~ 545 (550)
.+. +..+++||++|.||+++|+||.+.+..+.
T Consensus 177 ~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 177 GRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 111 11178999999999999999999887643
No 251
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.96 E-value=0.00042 Score=72.32 Aligned_cols=82 Identities=18% Similarity=0.257 Sum_probs=47.8
Q ss_pred EEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEeccc
Q psy15732 446 RVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQ 525 (550)
Q Consensus 446 ~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~ 525 (550)
.++++.+|+.+ .+.....|+.+++.. .++|++||+||+|+.... .++.+.+.+ .+ ..++++||+
T Consensus 104 d~il~VvD~~~-----~~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~~e~~~l-g~-----~~~~~iSA~ 167 (456)
T 4dcu_A 104 DVIIFMVNGRE-----GVTAADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFYSL-GF-----GEPYPISGT 167 (456)
T ss_dssp SEEEEEEESSS-----CSCHHHHHHHHHHTT---CCSCEEEEEECC-----------CCSGGG-SS-----SSEEECCTT
T ss_pred CEEEEEEeCCC-----CCChHHHHHHHHHHH---cCCCEEEEEECccchhhh--hhHHHHHHc-CC-----CceEEeecc
Confidence 45566666543 222334556655544 468999999999986431 122222221 11 134689999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy15732 526 SGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 526 ~g~gi~e~f~~l~~~~~~ 543 (550)
+|.||.++|++|.+.+..
T Consensus 168 ~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 168 HGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp TCTTHHHHHHHHHTTGGG
T ss_pred cccchHHHHHHHHhhccc
Confidence 999999999999887643
No 252
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=96.96 E-value=0.00088 Score=69.45 Aligned_cols=55 Identities=24% Similarity=0.364 Sum_probs=35.3
Q ss_pred CCe-EEEEecCCCCCCCC----CH----HHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 481 DAA-LLLLANKQDIPGCE----TV----ESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 481 ~~p-ili~~NK~Dl~~~~----~~----~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
++| ++|++||+|+...- .. +++.+.+....+.....+.++++||++|.||++.++
T Consensus 154 ~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 154 GVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 466 99999999996421 12 223333321122112367899999999999999655
No 253
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=96.89 E-value=0.0015 Score=65.97 Aligned_cols=72 Identities=8% Similarity=-0.020 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhhccCcCCCeE-EEEec-CCCCCCCCCH----HHHHHhcCCCcccCCCcEEEEE--ecccC---CCCHH
Q psy15732 463 LPEALAELTKLIAEKELKDAAL-LLLAN-KQDIPGCETV----ESITEAFDLYKLCCGRSWHIQA--CNAQS---GEGLH 531 (550)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~pi-li~~N-K~Dl~~~~~~----~~i~~~~~l~~~~~~~~~~~~~--~SA~~---g~gi~ 531 (550)
+....+++..+. . .++|. +|++| |+|+ +.... +++.+.+.... ...+.+++ +||++ |+||+
T Consensus 97 ~~qt~e~~~~~~-~---~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~---~~~~~ii~~~~SA~~~~~g~gi~ 168 (370)
T 2elf_A 97 DAHTGECIIALD-L---LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTV---LQDWECISLNTNKSAKNPFEGVD 168 (370)
T ss_dssp CHHHHHHHHHHH-H---TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTST---TTTCEEEECCCCTTSSSTTTTHH
T ss_pred cHHHHHHHHHHH-H---cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcC---CCceEEEecccccccCcCCCCHH
Confidence 344455554432 1 34676 88888 9999 43211 34555554211 23578999 99999 99999
Q ss_pred HHHHHHHHHHH
Q psy15732 532 EGLDWLSRQLI 542 (550)
Q Consensus 532 e~f~~l~~~~~ 542 (550)
++|++|.+.+.
T Consensus 169 ~L~~~l~~~~~ 179 (370)
T 2elf_A 169 ELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhcc
Confidence 99999998764
No 254
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=96.85 E-value=9.9e-05 Score=76.59 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=35.1
Q ss_pred eEEEEecCCCCCCC-CC-------HHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 483 ALLLLANKQDIPGC-ET-------VESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 483 pili~~NK~Dl~~~-~~-------~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
|++|++||+|+.+. .+ .+++.+.+....+. ...+.++++||++|.||.+.++
T Consensus 146 ~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 146 QLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFN-TNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCC-CTTCEEEECBTTTTBTTTBCCS
T ss_pred eEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCC-cCCceEEEeecccCcccccccc
Confidence 69999999999763 11 23444444322221 2357899999999999987654
No 255
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.80 E-value=0.00038 Score=67.65 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=40.8
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
.+.|++||+||+||.+....+...+++. ..++.++.+||++|.|+++++++|.+.+.
T Consensus 49 ~~kp~ilVlNK~DL~~~~~~~~~~~~~~------~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 49 KNKPRIMLLNKADKADAAVTQQWKEHFE------NQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp SSSCEEEEEECGGGSCHHHHHHHHHHHH------TTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred CCCCEEEEEECcccCCHHHHHHHHHHHH------hcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 4689999999999965211122223332 23457889999999999999999988765
No 256
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.002 Score=58.22 Aligned_cols=61 Identities=18% Similarity=0.312 Sum_probs=46.7
Q ss_pred EEEEEeeCCCCCccchhhHHHHHHHHHHHhhccC---cCCCeEEEEecCCCCCCCCCHHHHHHhcC
Q psy15732 445 MRVVTLGLDSADSADKERLPEALAELTKLIAEKE---LKDAALLLLANKQDIPGCETVESITEAFD 507 (550)
Q Consensus 445 ~~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~---~~~~pili~~NK~Dl~~~~~~~~i~~~~~ 507 (550)
...+++.+|.. .+.++|.++..|+..++.... ..++|++||+||+|+.+....+++.+.+.
T Consensus 119 ~~~~i~v~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~ 182 (193)
T 2ged_A 119 VKGLIFMVDST--VDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALE 182 (193)
T ss_dssp EEEEEEEEETT--CCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHH
T ss_pred CCEEEEEEECC--CCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHH
Confidence 46677777764 367889888899988876532 25799999999999988777777776664
No 257
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.59 E-value=0.00018 Score=69.66 Aligned_cols=55 Identities=15% Similarity=0.146 Sum_probs=29.0
Q ss_pred CCeEEEEecCCCCCCCCCHH----HHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHH
Q psy15732 481 DAALLLLANKQDIPGCETVE----SITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 481 ~~pili~~NK~Dl~~~~~~~----~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
++|+++|+||+|+....... .+.+.+. ..++.++.+||++|+|++++++||.+.+
T Consensus 144 ~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~------~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 144 KVNIIPLIAKADTLTPEECQQFKKQIMKEIQ------EHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp TSCEEEEESSGGGSCHHHHHHHHHHHHHHHH------HTTCCCCCC-----------CHHHHHTC
T ss_pred cCCEEEEEeccCCCCHHHHHHHHHHHHHHHH------HcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 68999999999985321111 2222222 3456788899999999999999998765
No 258
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=96.56 E-value=0.0011 Score=67.89 Aligned_cols=86 Identities=15% Similarity=0.190 Sum_probs=49.6
Q ss_pred EEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCe-EEEEecCCCCCCCCC-----HHHHHHhcCCCcccCCCcEEEE
Q psy15732 447 VVTLGLDSADSADKERLPEALAELTKLIAEKELKDAA-LLLLANKQDIPGCET-----VESITEAFDLYKLCCGRSWHIQ 520 (550)
Q Consensus 447 ~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~p-ili~~NK~Dl~~~~~-----~~~i~~~~~l~~~~~~~~~~~~ 520 (550)
.+++.+|+.+.. +....+|+..+.. .++| ++|++||+|+.+... .+++.+.+....+ ....+.++
T Consensus 101 ~~ilVvda~~g~----~~qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~i 171 (405)
T 2c78_A 101 GAILVVSAADGP----MPQTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF-PGDEVPVI 171 (405)
T ss_dssp SEEEEEETTTCC----CHHHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS-CTTTSCEE
T ss_pred EEEEEEECCCCC----cHHHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc-cccCCCEE
Confidence 344555554332 2334555554422 3578 899999999974211 1133333332122 12357899
Q ss_pred EecccCCCC------------------HHHHHHHHHHHH
Q psy15732 521 ACNAQSGEG------------------LHEGLDWLSRQL 541 (550)
Q Consensus 521 ~~SA~~g~g------------------i~e~f~~l~~~~ 541 (550)
++||++|.| |.+.+++|.+.+
T Consensus 172 ~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 172 RGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 210 (405)
T ss_dssp ECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred EccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence 999999987 667777766654
No 259
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.54 E-value=0.00081 Score=68.77 Aligned_cols=62 Identities=16% Similarity=0.096 Sum_probs=41.1
Q ss_pred CCCe-EEEEecCCCCCCCCC-----HHHHHHhcCCCcccCCCcEEEEEecccCCCC----------HHHHHHHHHHHHH
Q psy15732 480 KDAA-LLLLANKQDIPGCET-----VESITEAFDLYKLCCGRSWHIQACNAQSGEG----------LHEGLDWLSRQLI 542 (550)
Q Consensus 480 ~~~p-ili~~NK~Dl~~~~~-----~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~g----------i~e~f~~l~~~~~ 542 (550)
.++| ++|++||+|+.+... .+++.+.+....+ ....+.++++||++|.| |.+.|++|.+.+.
T Consensus 117 ~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 117 IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGY-KGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTS-CTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCC-CcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 3588 789999999975211 1234444432222 13457899999999875 8889998887664
No 260
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.52 E-value=0.00045 Score=66.97 Aligned_cols=56 Identities=21% Similarity=0.357 Sum_probs=41.6
Q ss_pred CCcceeccccccccccCCCCcEE----ecCCCcchhhhHhhcccCC---------CccCCCCCCCcccCC
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRL----LHCGHTVCLACLLRLPIKD---------DTITCPFDRQPTPVG 119 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~----l~CgH~fC~~Cl~~~~~~~---------~~~~CP~Cr~~~~~~ 119 (550)
.....|+||+..+... ..+|.. ..|||.|...|+.+|+... -.-.||.||.++...
T Consensus 306 e~~~ECaICys~~l~~-g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDG-GEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTT-CCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecCC-CCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 3567899999999853 334533 4799999999999998621 123699999987653
No 261
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.52 E-value=0.0003 Score=69.05 Aligned_cols=58 Identities=14% Similarity=0.094 Sum_probs=33.7
Q ss_pred CCeEEEEecCCCCCCCC----CHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhc
Q psy15732 481 DAALLLLANKQDIPGCE----TVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIAAG 545 (550)
Q Consensus 481 ~~pili~~NK~Dl~~~~----~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~~~ 545 (550)
++|+++|+||.|+.... ..+++.+.+. ...+.|+++||++| ||+++|.+|++.+....
T Consensus 155 ~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~------~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~ 216 (301)
T 2qnr_A 155 KVNIVPVIAKADTLTLKERERLKKRILDEIE------EHNIKIYHLPDAES-DEDEDFKEQTRLLKASI 216 (301)
T ss_dssp TSCEEEEECCGGGSCHHHHHHHHHHHHHHHH------HTTCCCCCCC----------CHHHHHHHHTTC
T ss_pred cCCEEEEEEeCCCCCHHHHHHHHHHHHHHHH------HcCCeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence 57999999999986421 1123333333 33467899999999 99999999999886553
No 262
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.48 E-value=0.0018 Score=67.04 Aligned_cols=51 Identities=12% Similarity=0.134 Sum_probs=32.9
Q ss_pred eEEEEecCCCCCCCCC------HHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHH
Q psy15732 483 ALLLLANKQDIPGCET------VESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGL 534 (550)
Q Consensus 483 pili~~NK~Dl~~~~~------~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f 534 (550)
|++|++||+|+.+... .+++.+.+....+ ....+.++++||++|.||++.|
T Consensus 159 ~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~-~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 159 HIVVAINKMDLNGFDERVFESIKADYLKFAEGIAF-KPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp EEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTC-CCSEEEEEECCTTTCTTTSSCC
T ss_pred eEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCC-CccCceEEEEeccCCCCccccc
Confidence 6999999999975311 1223332221110 0245899999999999999854
No 263
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.43 E-value=0.0014 Score=65.56 Aligned_cols=62 Identities=18% Similarity=0.166 Sum_probs=41.1
Q ss_pred CCeEEEEecCCCCCCCCCHH----HHHHhcCCCc-ccCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 481 DAALLLLANKQDIPGCETVE----SITEAFDLYK-LCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 481 ~~pili~~NK~Dl~~~~~~~----~i~~~~~l~~-~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
++|+++|+||+|+.+..... ++.+.+++.. ........++++||++|.||+++++||.+.+.
T Consensus 194 ~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 194 EVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred cccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 36889999999997542222 3433322111 00001237899999999999999999998764
No 264
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=96.41 E-value=0.0006 Score=71.66 Aligned_cols=50 Identities=20% Similarity=0.190 Sum_probs=32.7
Q ss_pred CeEEEEecCCCCCCC--CCHHHHHHhcC----CCcccCCCcEEEEEecccCCCCHHH
Q psy15732 482 AALLLLANKQDIPGC--ETVESITEAFD----LYKLCCGRSWHIQACNAQSGEGLHE 532 (550)
Q Consensus 482 ~pili~~NK~Dl~~~--~~~~~i~~~~~----l~~~~~~~~~~~~~~SA~~g~gi~e 532 (550)
.|++|++||+|+.+. ...+++.+.+. ...+ ....+.|+++||++|.||++
T Consensus 172 ~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~-~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 172 HNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGF-FEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp CCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTC-CGGGEEEEECCSSSCTTSSS
T ss_pred CcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCC-CcccceEEEEeeecCCCccc
Confidence 469999999999752 22233333221 1111 13368999999999999985
No 265
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=96.30 E-value=0.0029 Score=71.81 Aligned_cols=87 Identities=15% Similarity=0.128 Sum_probs=52.2
Q ss_pred EEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCe-EEEEecCCCCCCCCC-----HHHHHHhcCCCcccCCCcEEE
Q psy15732 446 RVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAA-LLLLANKQDIPGCET-----VESITEAFDLYKLCCGRSWHI 519 (550)
Q Consensus 446 ~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~p-ili~~NK~Dl~~~~~-----~~~i~~~~~l~~~~~~~~~~~ 519 (550)
..+++.+|+.|.... ...+++..+.. .++| ++|++||+|+.+... .+++.+.+....+ ....+.+
T Consensus 384 D~aILVVDAtdGv~~----QTrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~-~~~~vp~ 454 (1289)
T 3avx_A 384 DGAILVVAATDGPMP----QTREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF-PGDDTPI 454 (1289)
T ss_dssp SEEEEEEETTTCSCT----THHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS-CTTTCCE
T ss_pred CEEEEEEcCCccCcH----HHHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc-cccceeE
Confidence 345555555543322 23445543321 2578 889999999975211 1234444432222 1346789
Q ss_pred EEecccCC--------CCHHHHHHHHHHHH
Q psy15732 520 QACNAQSG--------EGLHEGLDWLSRQL 541 (550)
Q Consensus 520 ~~~SA~~g--------~gi~e~f~~l~~~~ 541 (550)
+++||++| .||.++|++|...+
T Consensus 455 IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 455 VRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp EECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred EEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 99999999 57888888888755
No 266
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=96.27 E-value=0.26 Score=49.89 Aligned_cols=136 Identities=10% Similarity=-0.020 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 268 EIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHLRESLLVQEAAATS 347 (550)
Q Consensus 268 ~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~ 347 (550)
...+.+....+...++.|+.+++++++...........+.+ +-.............|.++-+.|+++...|-.
T Consensus 52 QglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E-------~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKe 124 (562)
T 3ghg_A 52 KGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIME-------ILRGDFSSANNRDNTYNRVSEDLRSRIEVLKR 124 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH-------TTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred hhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH-------HHHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Confidence 45556666777777888888888887777776666555554 11133334446667788888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchh------HhhchhHHHHHHHHHHhhhh
Q psy15732 348 AVDMFVRERLGCLVQLHDDMGFWLQEVAKLYLKCEQMILQDDAR------VLTSGREIKEAIETIEKYDT 411 (550)
Q Consensus 348 ~l~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~e~~l~~~~~~------~L~~~~~~~~~l~~~~~~~~ 411 (550)
.|+... ..++.|+..++.+...+++|+..|+---+.++.+-.. =+..|.++...|+++....+
T Consensus 125 kVdnQl-snIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a~dL 193 (562)
T 3ghg_A 125 KVIEKV-QHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIAKDL 193 (562)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHhhccc
Confidence 999888 7779999999999999999998887766666554222 23455567777777766543
No 267
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.25 E-value=0.0039 Score=57.13 Aligned_cols=60 Identities=15% Similarity=0.183 Sum_probs=42.1
Q ss_pred CCCeEEEEecCCCCCCCC----CHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCE----TVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~----~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~ 543 (550)
.++|+++++||.|+...- ....+.+.+. .. ...+.++++||++|.|++++|+||.+.+..
T Consensus 136 ~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~--~~--~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 136 SNIAVLVLLTKADKLASGARKAQLNMVREAVL--AF--NGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHG--GG--CSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred cCCCeEEEEecccCCCchhHHHHHHHHHHHHH--hc--CCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 358999999999985421 1233333332 11 235788999999999999999999987644
No 268
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=96.08 E-value=0.00091 Score=69.92 Aligned_cols=55 Identities=13% Similarity=0.234 Sum_probs=35.5
Q ss_pred CCCe-EEEEecCCCCCCCC-CH-------HHHHHhcCCC-cccCCCcEEEEEecccCCCCHHHHH
Q psy15732 480 KDAA-LLLLANKQDIPGCE-TV-------ESITEAFDLY-KLCCGRSWHIQACNAQSGEGLHEGL 534 (550)
Q Consensus 480 ~~~p-ili~~NK~Dl~~~~-~~-------~~i~~~~~l~-~~~~~~~~~~~~~SA~~g~gi~e~f 534 (550)
.++| ++|++||+|+.+.. +. +++.+.+... .+.....+.++++||++|.||.+.|
T Consensus 179 ~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 179 QGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 4577 99999999996531 21 2344433211 1100136889999999999998865
No 269
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.96 E-value=0.0071 Score=65.98 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=23.8
Q ss_pred EEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 517 WHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 517 ~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
+.++.+||++|.||+++|++|...+.
T Consensus 248 ~pv~~~SA~~~~Gv~~Ll~~i~~~lp 273 (665)
T 2dy1_A 248 YPVALASGEREIGVLPLLELILEALP 273 (665)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred eEEEEeecccCcCHHHHHHHHHHhCC
Confidence 67999999999999999999998763
No 270
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=95.85 E-value=0.00084 Score=69.97 Aligned_cols=52 Identities=12% Similarity=0.131 Sum_probs=32.5
Q ss_pred CCe-EEEEecCCCCCCC--CCH----HHHHHhcCCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 481 DAA-LLLLANKQDIPGC--ETV----ESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 481 ~~p-ili~~NK~Dl~~~--~~~----~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
++| ++|++||+|+.+. ... +++.+.+....+ ....+.++++||++|.||.+.
T Consensus 144 ~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~-~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 144 GVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGY-NPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTC-CGGGCCEEECCTTTCBTTTBC
T ss_pred CCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCC-CccCceEEEeecccCcCcccc
Confidence 465 9999999999732 111 223333221111 123478999999999999765
No 271
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.80 E-value=0.0057 Score=61.22 Aligned_cols=62 Identities=21% Similarity=0.098 Sum_probs=39.6
Q ss_pred CCeEEEEecCCCCCCCC----CHHHHHHhcCCCcc-cCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 481 DAALLLLANKQDIPGCE----TVESITEAFDLYKL-CCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 481 ~~pili~~NK~Dl~~~~----~~~~i~~~~~l~~~-~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
+.|.++++||+|+.+.. ...++...+..... .......++.+||++|+|+++.++||.+.+.
T Consensus 212 ~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 212 EMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp CSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 35889999999985321 12233333332100 0011247889999999999999999988763
No 272
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=95.79 E-value=0.07 Score=58.42 Aligned_cols=84 Identities=15% Similarity=0.157 Sum_probs=49.0
Q ss_pred CccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC--CCHH----------HHHHhcC--CCcccC-----CCc
Q psy15732 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC--ETVE----------SITEAFD--LYKLCC-----GRS 516 (550)
Q Consensus 456 D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~----------~i~~~~~--l~~~~~-----~~~ 516 (550)
|+++..+..+...|...+ .. .+.|++||+||+|+... .+.+ .+.+.+. +..+.. ...
T Consensus 209 da~~~~s~~e~~~l~~~l-~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~ 284 (695)
T 2j69_A 209 RASQPCTLGERRYLENYI-KG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYD 284 (695)
T ss_dssp ETTSTTCHHHHHHHHHHT-TT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGG
T ss_pred eCCCccchhHHHHHHHHH-Hh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCC
Confidence 445545555544443333 22 35789999999998532 1111 1221110 111100 123
Q ss_pred EEEEEeccc--------------CCCCHHHHHHHHHHHHHH
Q psy15732 517 WHIQACNAQ--------------SGEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 517 ~~~~~~SA~--------------~g~gi~e~f~~l~~~~~~ 543 (550)
..++++||+ +|.||++.+++|.+.+..
T Consensus 285 ~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 285 ERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp GTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 468999999 999999999999987743
No 273
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=95.53 E-value=0.0015 Score=70.56 Aligned_cols=51 Identities=20% Similarity=0.164 Sum_probs=32.7
Q ss_pred CeEEEEecCCCCCCC--CCHHHHHHhc----CCCcccCCCcEEEEEecccCCCCHHHH
Q psy15732 482 AALLLLANKQDIPGC--ETVESITEAF----DLYKLCCGRSWHIQACNAQSGEGLHEG 533 (550)
Q Consensus 482 ~pili~~NK~Dl~~~--~~~~~i~~~~----~l~~~~~~~~~~~~~~SA~~g~gi~e~ 533 (550)
.|++||+||+|+.+. ...+++.+.+ ....+ ....+.++++||++|.||.+.
T Consensus 306 ~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~-~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 306 HNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGF-FEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTC-CGGGCEEEECCTTTCTTTSSC
T ss_pred CeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcc-cccCccEEeeecccCCCcccc
Confidence 459999999999752 1122222222 11111 123578999999999999876
No 274
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.44 E-value=0.015 Score=55.03 Aligned_cols=96 Identities=13% Similarity=0.203 Sum_probs=53.4
Q ss_pred EEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcC---CCccc--CCCcEEEEE
Q psy15732 447 VVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFD---LYKLC--CGRSWHIQA 521 (550)
Q Consensus 447 ~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~---l~~~~--~~~~~~~~~ 521 (550)
++++++|..+.+ ..-..+..|+.++... ...+.|++|++||.||.+. +.++...... +..+. -...+.+|.
T Consensus 108 ~il~V~d~~~~~--~~~~~~~~~l~~~~~~-~~~~~~iilv~nK~Dl~~~-~~~~~l~~~~~~~l~~l~~~~g~~~~~~~ 183 (247)
T 3lxw_A 108 ALLLVTQLGRFT--AQDQQAVRQVRDMFGE-DVLKWMVIVFTRKEDLAGG-SLHDYVSNTENRALRELVAECGGRVCAFD 183 (247)
T ss_dssp EEEEEEETTBCC--HHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTTTCEEECC
T ss_pred EEEEEEeCCCCC--HHHHHHHHHHHHHhCh-hhhccEEEEEEchHhcCCC-CHHHHHhhcccHHHHHHHHHcCCeEEEEe
Confidence 455555553322 1223344566665432 3346899999999999764 3332221110 00000 023455555
Q ss_pred ecccC---CCCHHHHHHHHHHHHHHhcC
Q psy15732 522 CNAQS---GEGLHEGLDWLSRQLIAAGV 546 (550)
Q Consensus 522 ~SA~~---g~gi~e~f~~l~~~~~~~~~ 546 (550)
.+|.+ |.||.++|+.|.+.+...+.
T Consensus 184 ~~~~~~~~~~~v~~Ll~~i~~~~~~~~~ 211 (247)
T 3lxw_A 184 NRATGREQEAQVEQLLGMVEGLVLEHKG 211 (247)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHcCC
Confidence 55543 78999999999998876543
No 275
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=95.43 E-value=0.0043 Score=66.70 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=33.8
Q ss_pred CCe-EEEEecCCCCCCCC--C----HHHHHHhc-CCCcccCCCcEEEEEecccCCCCHH
Q psy15732 481 DAA-LLLLANKQDIPGCE--T----VESITEAF-DLYKLCCGRSWHIQACNAQSGEGLH 531 (550)
Q Consensus 481 ~~p-ili~~NK~Dl~~~~--~----~~~i~~~~-~l~~~~~~~~~~~~~~SA~~g~gi~ 531 (550)
++| ++|++||+|+.+.. . ..++.+.+ ....+ ....+.|+++||++|.||.
T Consensus 314 gip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~-~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 314 GISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGF-KTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp SCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCC-CGGGEEEEEECSSSCSSSC
T ss_pred CCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCC-CccceEEEEEecccCcccc
Confidence 465 99999999996521 1 23444444 22222 1346789999999999998
No 276
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.26 E-value=0.0032 Score=60.30 Aligned_cols=52 Identities=15% Similarity=0.068 Sum_probs=35.5
Q ss_pred CCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHH
Q psy15732 481 DAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSR 539 (550)
Q Consensus 481 ~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~ 539 (550)
++|++||.||+||.+....+...+++. ..++.+ .+||++|.|+++++++|..
T Consensus 46 ~k~~iivlNK~DL~~~~~~~~~~~~~~------~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 46 RKETIILLNKVDIADEKTTKKWVEFFK------KQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp TSEEEEEEECGGGSCHHHHHHHHHHHH------HTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred CCCcEEEEECccCCCHHHHHHHHHHHH------HcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 689999999999965311122223232 112345 8999999999999988754
No 277
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=95.10 E-value=0.005 Score=61.80 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=39.4
Q ss_pred CCCeEEEEecCCCCCCCCC-HHHHHHhcCCCcccCCCc-EEEEEecccCCCCHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCET-VESITEAFDLYKLCCGRS-WHIQACNAQSGEGLHEGLDWLSRQ 540 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~-~~~i~~~~~l~~~~~~~~-~~~~~~SA~~g~gi~e~f~~l~~~ 540 (550)
.+.|+++|+||.|+.+... ..++.+. .+..+ ..+ +.++.+||++|.|++++|++|...
T Consensus 196 ~~~~~i~V~NK~Dl~~~~~~~~~~~~~-~~~~l--~~~~~~v~~~SA~~~~~i~~l~~~l~~e 255 (353)
T 2x2e_A 196 QGQRTIGVITKLDLMDEGTDARDVLEN-KLLPL--RRGYIGVVNRSQKDIDGKKDITAALAAE 255 (353)
T ss_dssp TCTTEEEEEECGGGSCTTCCCHHHHTT-CSSCC--TTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred CCCceEEEeccccccCcchhHHHHHhC-Ccccc--cCCceEEEeCCcccccccccHHHHHHHH
Confidence 4689999999999964322 2222221 11111 123 478999999999999999999873
No 278
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=95.03 E-value=0.0087 Score=63.34 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=36.7
Q ss_pred CCCeEEEEecCCCCCCCCC---HHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCET---VESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~---~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
.++|++|++||+|+.++.. .+++.+.+++..+ ...|.+ +||++|.||.+.+.
T Consensus 133 ~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~~~--~~~~pi--~sa~~~~Gv~dl~~ 187 (529)
T 2h5e_A 133 RDTPILTFMNKLDRDIRDPMELLDEVENELKIGCA--PITWPI--GCGKLFKGVYHLYK 187 (529)
T ss_dssp TTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEE--ESEEEE--SCGGGCCEEEETTT
T ss_pred cCCCEEEEEcCcCCccccHHHHHHHHHHHhCCCcc--ceecce--ecccCcceeeehhh
Confidence 4689999999999987643 5667777775433 233433 88998888876654
No 279
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=94.92 E-value=0.069 Score=58.43 Aligned_cols=26 Identities=19% Similarity=0.051 Sum_probs=23.7
Q ss_pred EEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 517 WHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 517 ~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
++++..||++|.||++.++.|...+.
T Consensus 256 ~Pv~~gSA~~~~Gv~~LLd~i~~~lP 281 (691)
T 1dar_A 256 TPVFLGSALKNKGVQLLLDAVVDYLP 281 (691)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHSC
T ss_pred eEEEEeecccCcCHHHHHHHHHHhCC
Confidence 67999999999999999999998873
No 280
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=94.87 E-value=0.74 Score=44.86 Aligned_cols=111 Identities=8% Similarity=-0.038 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 270 EAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHLRESLLVQEAAATSAV 349 (550)
Q Consensus 270 a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l 349 (550)
.+.+....+...+..|+..+..++............+.+ +.....+..+.....|.++..-|+++...|.+.|
T Consensus 57 ~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~-------~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V 129 (390)
T 1deq_A 57 LIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVE-------LMRGDFAKANNNDNTFKQINEDLRSRIEILRRKV 129 (390)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-------HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555555555555555555555444444444333 0002233344456778888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy15732 350 DMFVRERLGCLVQLHDDMGFWLQEVAKLYLKCEQMILQD 388 (550)
Q Consensus 350 ~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~e~~l~~~ 388 (550)
+.... .++.|+..++.+...+++|+..|+....-+..+
T Consensus 130 ~~q~~-~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~s 167 (390)
T 1deq_A 130 IEQVQ-RINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGS 167 (390)
T ss_pred HHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 88887 888999999999999999999886666666543
No 281
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.71 E-value=0.011 Score=59.03 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=35.9
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWL 537 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l 537 (550)
.++|++||.||+||.+....+.+.+++.. +. ..++.++.+||++|.|++++..++
T Consensus 159 ~~~~~iivlNK~DL~~~~~~~~~~~~~~~--y~-~~G~~v~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 159 LQVEPLIVLNKIDLLDDEGMDFVNEQMDI--YR-NIGYRVLMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp HTCEEEEEEECGGGCCHHHHHHHHHHHHH--HH-TTTCCEEECBTTTTBTHHHHHHHH
T ss_pred cCCCEEEEEECccCCCchhHHHHHHHHHH--HH-hCCCcEEEEecCCCcCHHHHHHhc
Confidence 35788999999999643211113333221 11 334568899999999999887664
No 282
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.18 E-value=0.0034 Score=61.45 Aligned_cols=52 Identities=10% Similarity=0.246 Sum_probs=35.9
Q ss_pred CCCeEEEEecCCCCCCCCC----HHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCET----VESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWL 537 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~----~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l 537 (550)
.++|++||.||+||.+... .+++.+.+. ...+.++.+||++|.|+++.+.++
T Consensus 116 ~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~------~~g~~v~~~sa~~~~g~~~L~~~~ 171 (307)
T 1t9h_A 116 NDIQPIICITKMDLIEDQDTEDTIQAYAEDYR------NIGYDVYLTSSKDQDSLADIIPHF 171 (307)
T ss_dssp TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHH------HHTCCEEECCHHHHTTCTTTGGGG
T ss_pred CCCCEEEEEECCccCchhhhHHHHHHHHHHHH------hCCCeEEEEecCCCCCHHHHHhhc
Confidence 5689999999999965421 123333322 223578889999999998877665
No 283
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.97 E-value=0.033 Score=52.20 Aligned_cols=59 Identities=15% Similarity=0.224 Sum_probs=32.8
Q ss_pred CeEEEEecCCCCCCCCCHH--------HHHHhcCCCcccCCCcEEEEEeccc---CCCCHHHHHHHHHHHHHHh
Q psy15732 482 AALLLLANKQDIPGCETVE--------SITEAFDLYKLCCGRSWHIQACNAQ---SGEGLHEGLDWLSRQLIAA 544 (550)
Q Consensus 482 ~pili~~NK~Dl~~~~~~~--------~i~~~~~l~~~~~~~~~~~~~~SA~---~g~gi~e~f~~l~~~~~~~ 544 (550)
.|++||+||+|+......+ .+.+.+. .+ ...+.+|..++. ++.||.++|..|...+...
T Consensus 146 ~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~--~~--~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 146 SFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD--IF--GDRYCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp GGEEEEEECGGGC------------CHHHHHHHH--HH--SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH--Hc--CCEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 5999999999985443222 1222211 11 122334433332 3479999999998888664
No 284
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=93.84 E-value=0.063 Score=50.22 Aligned_cols=51 Identities=18% Similarity=0.456 Sum_probs=40.9
Q ss_pred CcceeccccccccccCCCCcEEe-cCCCcchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLL-HCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l-~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
....|.+|.+... . -+.- .|+|.|...|+..|+.......||.|+...+..
T Consensus 179 ~i~~C~iC~~iv~---~--g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLI---Q--GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCS---S--CEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHh---C--CcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 3667999999998 3 2333 499999999999998865667899999987654
No 285
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.70 E-value=0.0099 Score=60.80 Aligned_cols=63 Identities=14% Similarity=0.150 Sum_probs=27.7
Q ss_pred HHHHHHhhccCcCCCeEEEEecCCCCCCCCCH----HHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHH
Q psy15732 468 AELTKLIAEKELKDAALLLLANKQDIPGCETV----ESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 468 ~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~----~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
.|+..+. .++|+++|+||.|+...... .++.+.+. ..++.++.+||++|+|++++|..|...+
T Consensus 159 ~~lk~L~-----~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~------~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 159 EFMKRLH-----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQ------EHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHT-----TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHH------HHTCCCCCCC-----------------C
T ss_pred HHHHHHh-----ccCcEEEEEEcccCccHHHHHHHHHHHHHHHH------HcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 5666652 26899999999998532111 22333332 2345688899999999999998887654
No 286
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=93.60 E-value=0.7 Score=46.89 Aligned_cols=9 Identities=22% Similarity=0.449 Sum_probs=4.9
Q ss_pred ccccc-cccc
Q psy15732 247 PLMCF-ICKD 255 (550)
Q Consensus 247 ~~iC~-~C~~ 255 (550)
-+.|. -|.+
T Consensus 42 GvkCPSGCrL 51 (562)
T 3ghg_A 42 NYKCPSGCRM 51 (562)
T ss_dssp TTEEECHHHH
T ss_pred CCCCCcccch
Confidence 56664 4654
No 287
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=93.58 E-value=1.9 Score=42.90 Aligned_cols=135 Identities=10% Similarity=0.054 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 269 IEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHLRESLLVQEAAATSA 348 (550)
Q Consensus 269 ~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~ 348 (550)
..+.+....+...+..|+..+..+.............+.+ ......+..+.....|.++..-|+.+...|.+.
T Consensus 54 glL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~-------~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~k 126 (491)
T 1m1j_A 54 GIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETIN-------ILKPGLEGAQQLDENYGHVSTELRRRIVTLKQR 126 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH-------HHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666666666665544443333333322 000233445556678888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhH------hhchhHHHHHHHHHHhhhh
Q psy15732 349 VDMFVRERLGCLVQLHDDMGFWLQEVAKLYLKCEQMILQDDARV------LTSGREIKEAIETIEKYDT 411 (550)
Q Consensus 349 l~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~e~~l~~~~~~~------L~~~~~~~~~l~~~~~~~~ 411 (550)
|+... ..++.|+..++.+...+++|+..|..--+.+..+-... +..+.++...|+++....+
T Consensus 127 Vd~qi-~~IrvLq~~l~~q~skIQRLE~dI~~q~~~Cr~pC~r~~~y~VD~~~Ye~~QKqLeQv~a~dL 194 (491)
T 1m1j_A 127 VATQV-NRIKALQNSIQEQVVEMKRLEVDIDIKIRACKGSCARSFDYQVDKEGYDNIQKHLTQASSIDM 194 (491)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTBSSCCCCCCCTTTTHHHHHHHHHHTTCCC
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHhhhcHHHHHHHHHHHHHhhcccc
Confidence 99888 88999999999999999999999887777776542222 3455567777887765443
No 288
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.23 E-value=0.083 Score=51.59 Aligned_cols=61 Identities=13% Similarity=0.015 Sum_probs=38.9
Q ss_pred CCCeEEEEecCCCCCCCCC--HHHHHHhcCCCcccCCCcEEEEEecccC---CCCHHHHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCET--VESITEAFDLYKLCCGRSWHIQACNAQS---GEGLHEGLDWLSRQLIA 543 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~--~~~i~~~~~l~~~~~~~~~~~~~~SA~~---g~gi~e~f~~l~~~~~~ 543 (550)
.+.|+++|+||+|+..... .+.+...+. .+ ....+.+..+||.+ |.||.++++++.+.+..
T Consensus 197 ~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~--~~-~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 197 EGKRTIGVITKLDLMDKGTDAMEVLTGRVI--PL-TLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp SCSSEEEEEECTTSSCSSCCCHHHHTTSSS--CC-TTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCcccCCcchHHHHHHhCCCc--cC-CCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 4689999999999964422 222222111 11 01224556666777 89999999999887754
No 289
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=93.20 E-value=0.031 Score=56.03 Aligned_cols=57 Identities=11% Similarity=0.075 Sum_probs=38.2
Q ss_pred CCCeEEEEecCCCCCCCC-CHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCE-TVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~-~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
.+.|+++|+||.|+.... ...++.+... ....+.|+.+||++|.||++.+.++....
T Consensus 202 ~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~s~~~i~~~~~~~~~~~ 259 (360)
T 3t34_A 202 SGDRTFGVLTKIDLMDKGTDAVEILEGRS-----FKLKYPWVGVVNRSQADINKNVDMIAARK 259 (360)
T ss_dssp TCTTEEEEEECGGGCCTTCCSHHHHTTSS-----SCCSSCCEEECCCCHHHHHTTCCHHHHHH
T ss_pred cCCCEEEEEeCCccCCCcccHHHHHcCcc-----ccccCCeEEEEECChHHhccCCCHHHHHH
Confidence 467999999999985431 1222222221 13456788999999999999888765543
No 290
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=93.19 E-value=5.6 Score=40.52 Aligned_cols=107 Identities=9% Similarity=0.083 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q psy15732 269 IEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAY---FNHLRESLLVQEAAA 345 (550)
Q Consensus 269 ~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~---f~~l~~~L~~~e~~l 345 (550)
+....++..+...++.|+..++.+..........+..|+. .....+.++... ..+....|++....+
T Consensus 89 D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~----------slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i 158 (464)
T 1m1j_B 89 TTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDN----------KLVKTQKQRKDNDIILSEYNTEMELHYNYI 158 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHH----------HhhcccccccchhhHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666666655555555444444 333333333332 233333444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15732 346 TSAVDMFVRERLGCLVQLHDDMGFWLQEVAKLYLKCEQMI 385 (550)
Q Consensus 346 l~~l~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~e~~l 385 (550)
.+.++......+..|+..++.+...+..|+..+......+
T Consensus 159 ~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~~~~~~~ 198 (464)
T 1m1j_B 159 KDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIATQTDYC 198 (464)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444445555666666666666666666655544443
No 291
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=92.70 E-value=0.37 Score=52.62 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=23.5
Q ss_pred EEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 517 WHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 517 ~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
.+++..||++|.||+..++.|...+.
T Consensus 254 ~Pv~~gSA~~~~Gv~~LLd~i~~~lP 279 (693)
T 2xex_A 254 YPVLCGTAFKNKGVQLMLDAVIDYLP 279 (693)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred eeEEEeecccCcCHHHHHHHHHHHCC
Confidence 57999999999999999999998873
No 292
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=92.50 E-value=0.23 Score=52.56 Aligned_cols=27 Identities=19% Similarity=0.004 Sum_probs=23.7
Q ss_pred cEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 516 SWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 516 ~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
-.+++..||++|.||++.++.|...+.
T Consensus 268 ~~PV~~gSA~~~~Gv~~LLd~iv~~~P 294 (548)
T 3vqt_A 268 LTPVFFGSAINNFGVREMLDMFVEFAP 294 (548)
T ss_dssp EEEEEECBGGGTBSHHHHHHHHHHHSC
T ss_pred cceeeecccccCcCHHHHHHHHHHhCC
Confidence 367899999999999999999988763
No 293
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=92.26 E-value=0.32 Score=53.20 Aligned_cols=26 Identities=19% Similarity=0.142 Sum_probs=23.3
Q ss_pred EEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 517 WHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 517 ~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
++++..||++|.||+..|+.|...+.
T Consensus 262 ~Pv~~gSa~~~~Gv~~LLd~i~~~lP 287 (704)
T 2rdo_7 262 ILVTCGSAFKNKGVQAMLDAVIDYLP 287 (704)
T ss_pred eEEEEeecccCccHHHHHHHHHHHCC
Confidence 56899999999999999999998763
No 294
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=92.16 E-value=0.12 Score=57.16 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=61.8
Q ss_pred hccCCcceeccccccccccCCCCcEEecCC-CcchhhhHhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHHHH
Q psy15732 60 LILELALECRVCEDIFLTQGDKVPRLLHCG-HTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELIEK 138 (550)
Q Consensus 60 ~~~~~~l~C~iC~~~~~~~~~~~P~~l~Cg-H~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~~ 138 (550)
....+++.|||-.+.+. | |++++-| +||=+..|.+|+.. ..+||.=|.++... .+.+|..|...++.
T Consensus 886 ~~iP~~F~cPIs~~lM~---D--PVilpsG~~TydR~~I~~wl~~--~~tdP~Tr~~L~~~-----~liPN~~Lk~~I~~ 953 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMK---D--PVILPASKMNIDRSTIKAHLLS--DSTDPFNRMPLKLE-----DVTPNEELRQKILC 953 (968)
T ss_dssp CCSCGGGBCTTTCSBCS---S--EEECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBCCGG-----GCEECHHHHHHHHH
T ss_pred cCCcHHhCCcchhhHHh---C--CeEcCCCCEEECHHHHHHHHhc--CCCCCCCCCCCCcc-----cccccHHHHHHHHH
Confidence 44668999999999999 9 9999998 69999999999974 45799999988764 48899999999998
Q ss_pred HHhcc
Q psy15732 139 IQTND 143 (550)
Q Consensus 139 ~~~~~ 143 (550)
+....
T Consensus 954 w~~~~ 958 (968)
T 3m62_A 954 FKKQK 958 (968)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
No 295
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=91.80 E-value=2.6 Score=42.54 Aligned_cols=111 Identities=8% Similarity=0.074 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHH---HHHHHHHHHHHHH
Q psy15732 267 VEIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAY---FNHLRESLLVQEA 343 (550)
Q Consensus 267 l~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~---f~~l~~~L~~~e~ 343 (550)
|.+....++..+...+..|+..++++........+.+..|+. .....+..+... .++....|++...
T Consensus 82 lad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~----------s~~~~q~~~~~n~~~~~~s~~mle~~~~ 151 (461)
T 3ghg_B 82 LQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKD----------LWQKRQKQVKDNENVVNEYSSELEKHQL 151 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH----------HHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH----------HhccccCCCCcchhHHHHHHHHHHHHHH
Confidence 356677778888888888888888888888888887777776 555555554432 2333344555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy15732 344 AATSAVDMFVRERLGCLVQLHDDMGFWLQEVAKLYLKCEQMILQ 387 (550)
Q Consensus 344 ~ll~~l~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~e~~l~~ 387 (550)
...+.+.......++.|+..++.+...+..|+..+..++..+..
T Consensus 152 ~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~~~c~~ 195 (461)
T 3ghg_B 152 YIDETVNSNIPTNLRVLRSILENLRSKIQKLESDVSAQMEYCRT 195 (461)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 44445566667788888889999999999999999888888765
No 296
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=91.70 E-value=0.08 Score=37.70 Aligned_cols=45 Identities=24% Similarity=0.551 Sum_probs=37.1
Q ss_pred CCCCccccccccccccc-hhhhhHhhhhhcCCCcccCCcccccCCCC
Q psy15732 170 KCDEDESHIAVLYCTVC-ASHLCEQCASDSHATRTLQKHRRIPLSEK 215 (550)
Q Consensus 170 ~C~~~~~~~A~~~C~~C-~~~lC~~C~~~h~~~~~~~~H~~~~~~~~ 215 (550)
.|--|... |+..|..| +..||..|+..-|..-..+.|+.+++...
T Consensus 10 WC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~~~d~r~Hk~v~y~~~ 55 (67)
T 2d8v_A 10 WCCICNED-ATLRCAGCDGDLYCARCFREGHDNFDLKEHQTSPYHPR 55 (67)
T ss_dssp SCTTTCSC-CCEEETTTTSEEECSSHHHHHTTTSSTTTCCEECCCCS
T ss_pred eeEEeCCC-CeEEecCCCCceehHHHHHHHccchhhhccceeeccCC
Confidence 35556544 99999999 68899999999998778899999887654
No 297
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.66 E-value=0.16 Score=50.34 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=36.8
Q ss_pred CeEEEEecCCCCCCCCC-----HHHHHHhcCCCc-ccCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 482 AALLLLANKQDIPGCET-----VESITEAFDLYK-LCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 482 ~pili~~NK~Dl~~~~~-----~~~i~~~~~l~~-~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
+|.+++.||.|+..... ..++...+.+-. ........++.+||++|.|+++.+++|.+.+.
T Consensus 194 ~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 194 LADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred cccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 35567779999743211 123333332211 00000235788999999999999999988664
No 298
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=91.25 E-value=0.093 Score=57.50 Aligned_cols=59 Identities=14% Similarity=0.065 Sum_probs=38.9
Q ss_pred CCCeEEEEecCCCCCCCCC-HHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCET-VESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQ 540 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~-~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~ 540 (550)
.+.|+++|.||.|+...-. ...+.. -.+..+. .....++.+||++|.|+++.+++|.+.
T Consensus 216 ~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~-lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 216 QGQRTIGVITKLDLMDEGTDARDVLE-NKLLPLR-RGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp TCSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCS-SCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred cCCCEEEEEeCcccCCcchhhHHHHH-HHhhhhh-ccCCceEEecccccccchhHHHHHHHH
Confidence 4689999999999954321 122222 1111110 123478899999999999999999873
No 299
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=89.13 E-value=0.015 Score=59.15 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=32.1
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHH
Q psy15732 482 AALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535 (550)
Q Consensus 482 ~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~ 535 (550)
+|+++++||.|+........+.+.+. ..+..++++||++|.||.++++
T Consensus 215 kP~i~v~NK~D~~~~~~l~~l~~~~~------~~~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 215 KPMVIAANKADAASDEQIKRLVREEE------KRGYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp SCEEEEEECGGGSCHHHHHHHHHHHH------HTTCEEEEECHHHHHHHHSCSS
T ss_pred CCEEEEEeCccccchHHHHHHHHHHh------hcCCcEEEEeccchhhHHHHHh
Confidence 79999999999862111223333222 1134789999999999987544
No 300
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=88.14 E-value=10 Score=38.02 Aligned_cols=111 Identities=11% Similarity=0.102 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 267 VEIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEGNTGPSGT-EPGTGDQARAKVHAYFNHLRESLLVQEAAA 345 (550)
Q Consensus 267 l~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~I~~~f~~l~~~L~~~e~~l 345 (550)
|.+....++..+...+..|+..+++++.....+...+..++.--+.-+. ..+..+.+ .+...+|.+.+.+-|..+
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~----tq~skkml~~~~~~e~~~ 100 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQL----TQKSKKIIEEIIRYENTI 100 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHH----HHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhH----HHHHHHHHHHHHHHHHHh
Confidence 3566677777788888888888888877777777766666652111111 11122222 222233333333323322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15732 346 TSAVDMFVRERLGCLVQLHDDMGFWLQEVAKLYLKCEQMIL 386 (550)
Q Consensus 346 l~~l~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~e~~l~ 386 (550)
......+..|+.++..+...+..|+..+..++..+.
T Consensus 101 -----~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~~ 136 (409)
T 1m1j_C 101 -----LAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHCQ 136 (409)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred -----cchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 222344455555555666666666666655555443
No 301
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=88.03 E-value=0.23 Score=33.73 Aligned_cols=42 Identities=24% Similarity=0.645 Sum_probs=32.6
Q ss_pred ccCCCCccccccccccccchhhhhHhhhhhcCCCcccCCcccccCCC
Q psy15732 168 HIKCDEDESHIAVLYCTVCASHLCEQCASDSHATRTLQKHRRIPLSE 214 (550)
Q Consensus 168 ~~~C~~~~~~~A~~~C~~C~~~lC~~C~~~h~~~~~~~~H~~~~~~~ 214 (550)
...|...+...-..||.+|...+|..|....|+ +|.++++.+
T Consensus 6 ~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~-----~H~~~~l~e 47 (50)
T 2yvr_A 6 TVYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK-----DHQYQFLED 47 (50)
T ss_dssp SCBCSSSTTCBCCEEETTTTEEECHHHHHTTTT-----TCCEEETTC
T ss_pred CCcCcCCCCCCEEEEeCCCCEEEecccCCCcCC-----CCceecHHH
Confidence 345777766778999999999999999885443 677777665
No 302
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=86.47 E-value=4.1 Score=40.75 Aligned_cols=112 Identities=9% Similarity=0.122 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 267 VEIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEGNTGPSGT-EPGTGDQARAKVHAYFNHLRESLLVQEAAA 345 (550)
Q Consensus 267 l~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~I~~~f~~l~~~L~~~e~~l 345 (550)
|.+....++..+...++.|+..++++........+.+..|+..-..-+. ..+..+. +.+.-.++.+.+..-
T Consensus 25 l~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~----~~q~Skkml~~~~~~---- 96 (411)
T 3ghg_C 25 IADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDA----ATLKSRKMLEEIMKY---- 96 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHH----HHHHHHHHHHHHHHH----
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhh----HHHHHHHHHHHHHHH----
Confidence 3567777888888888888888888888888877777777651000010 1111111 111112122211111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy15732 346 TSAVDMFVRERLGCLVQLHDDMGFWLQEVAKLYLKCEQMILQ 387 (550)
Q Consensus 346 l~~l~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~e~~l~~ 387 (550)
+.+-......+..|+.........+..|...+..++..+..
T Consensus 97 -~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~~~ 137 (411)
T 3ghg_C 97 -EASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQE 137 (411)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred -HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22222233444555555555566666666666666665544
No 303
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=84.99 E-value=0.98 Score=34.26 Aligned_cols=52 Identities=23% Similarity=0.417 Sum_probs=39.6
Q ss_pred Ccceeccccccccc--cCCCCcEEe--cCCCcchhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 64 LALECRVCEDIFLT--QGDKVPRLL--HCGHTVCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 64 ~~l~C~iC~~~~~~--~~~~~P~~l--~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
..-.|.||.+..-. +|+ |... .|+-..|+.|+.--... ....||.|++....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge--~FVAC~eC~FPvCrpCyEYErke-G~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGD--LFVACNECGFPACRPCYEYERRE-GTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSS--BCCSCSSSCCCCCHHHHHHHHHT-SCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCC--EEEeeeccCChhhHHHHHHHHhc-cCccccccCCcccc
Confidence 34689999998554 345 6665 89999999999765543 55679999998864
No 304
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=83.76 E-value=0.69 Score=35.52 Aligned_cols=48 Identities=25% Similarity=0.355 Sum_probs=36.2
Q ss_pred CCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
-.-+.|..|-..++ . .+--..|-+|..|+..++. ..-.||+|..+++.
T Consensus 26 ~G~~nCKsCWf~~k---~---LV~C~dHYLCl~CLtlmL~--~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 26 LGPQFCKSCWFENK---G---LVECNNHYLCLNCLTLLLS--VSNRCPICKMPLPT 73 (99)
T ss_dssp SCCCCCCSSCSCCS---S---EEECSSCEEEHHHHHHTCS--SSSEETTTTEECCC
T ss_pred cCcccChhhccccC---C---eeeecchhhHHHHHHHHHh--hccCCcccCCcCCc
Confidence 34578999976665 3 3335569999999999887 55569999988764
No 305
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=82.04 E-value=0.65 Score=50.20 Aligned_cols=25 Identities=12% Similarity=0.306 Sum_probs=21.6
Q ss_pred EEEEEecccCCCCHHHHHHHHHHHH
Q psy15732 517 WHIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 517 ~~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
.+++..||++|.||++.++.|...+
T Consensus 213 ~Pv~~gSa~~~~Gv~~LLd~i~~~~ 237 (638)
T 3j25_A 213 FPLYHGSAKSNIGIDNLIEVITNKF 237 (638)
T ss_dssp CCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred ccccccccccCCCchhHhhhhhccc
Confidence 4677889999999999999998765
No 306
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=79.95 E-value=0.81 Score=32.76 Aligned_cols=42 Identities=26% Similarity=0.529 Sum_probs=32.8
Q ss_pred cCCCCccccccccccccchhhhhHhhhhh-cCCCcccCCcccccCCCC
Q psy15732 169 IKCDEDESHIAVLYCTVCASHLCEQCASD-SHATRTLQKHRRIPLSEK 215 (550)
Q Consensus 169 ~~C~~~~~~~A~~~C~~C~~~lC~~C~~~-h~~~~~~~~H~~~~~~~~ 215 (550)
..|...+......||.+|...+|..|... .|+ +|.++++.+.
T Consensus 9 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~-----~H~~~~l~~a 51 (64)
T 2d8u_A 9 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK-----ACEVAPLQSV 51 (64)
T ss_dssp CCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT-----SSCEECTTTC
T ss_pred CcCcCcCCCccceEcCcCCceeCccccCCCcCC-----CCCeeCHHHH
Confidence 45777766778899999999999999863 443 5888887765
No 307
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=77.54 E-value=1.4 Score=43.46 Aligned_cols=65 Identities=17% Similarity=0.352 Sum_probs=47.8
Q ss_pred cceeccccccccccCCCCcEEe-cCCCcchhhh--HhhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHHHHH
Q psy15732 65 ALECRVCEDIFLTQGDKVPRLL-HCGHTVCLAC--LLRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELIEKI 139 (550)
Q Consensus 65 ~l~C~iC~~~~~~~~~~~P~~l-~CgH~fC~~C--l~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~~~ 139 (550)
.|.||+-...+. . |+.- .|.|.-|-.- +...........||+|.+.+... .|.....+.+++...
T Consensus 249 SL~CPlS~~ri~---~--PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~-----dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 249 SLQCPISYTRMK---Y--PSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALE-----NLAISEFVDDILQNC 316 (371)
T ss_dssp ESBCTTTSSBCS---S--EEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGG-----GEEEBHHHHHHHTTS
T ss_pred eecCCCcccccc---c--cCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHH-----HeeEcHHHHHHHHhc
Confidence 589999999998 8 9776 8999866543 22222234677899999988765 488888888887654
No 308
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=75.67 E-value=1.9 Score=42.31 Aligned_cols=64 Identities=20% Similarity=0.360 Sum_probs=47.2
Q ss_pred cceeccccccccccCCCCcEEe-cCCCcchhhhH--hhcccCCCccCCCCCCCcccCCCCCccCccccHHHHHHHHH
Q psy15732 65 ALECRVCEDIFLTQGDKVPRLL-HCGHTVCLACL--LRLPIKDDTITCPFDRQPTPVGYSGVWGLKKNFALLELIEK 138 (550)
Q Consensus 65 ~l~C~iC~~~~~~~~~~~P~~l-~CgH~fC~~Cl--~~~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~n~~l~~~~~~ 138 (550)
.|.||+-...+. . |..- .|.|.-|-.-. ...........||+|.+.+... .|..+..+.+++..
T Consensus 215 SL~CPlS~~ri~---~--P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~-----dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 215 SLMCPLGKMRLT---I--PCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYE-----SLILDGLFMEILND 281 (360)
T ss_dssp ESBCTTTCSBCS---S--EEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGG-----GEEEBHHHHHHHTT
T ss_pred eeeCCCccceec---c--CCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHH-----HeEEcHHHHHHHHh
Confidence 578999999998 7 9776 89998655422 2222234677899999988775 48888888888764
No 309
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=75.19 E-value=55 Score=30.74 Aligned_cols=31 Identities=13% Similarity=0.278 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 319 TGDQARAKVHAYFNHLRESLLVQEAAATSAV 349 (550)
Q Consensus 319 ~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l 349 (550)
+.+.++.++..+.++|+..+...-.++-..|
T Consensus 67 ~~eelr~kL~p~~~el~~~l~~~~eeLr~~L 97 (273)
T 3s84_A 67 QAEQLRRQLTPYAQRMERVLRENADSLQASL 97 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4444444444444444444444444333333
No 310
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=75.13 E-value=15 Score=32.66 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=12.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 319 TGDQARAKVHAYFNHLRESLLVQEA 343 (550)
Q Consensus 319 ~~~~~~~~I~~~f~~l~~~L~~~e~ 343 (550)
++++++.++.-+.++|+..+..+-+
T Consensus 129 ~~Eelr~~L~Py~eelr~kl~~~~e 153 (191)
T 1nfn_A 129 STEELRVRLASHLRKLRKRLLRDAD 153 (191)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4555555555555554444444433
No 311
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=74.68 E-value=1.7 Score=32.20 Aligned_cols=45 Identities=22% Similarity=0.617 Sum_probs=33.6
Q ss_pred CCcceeccccccccccCCCCcEEecC----CCcchhhhHhhccc---CCCccCCCCC
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLLHC----GHTVCLACLLRLPI---KDDTITCPFD 112 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l~C----gH~fC~~Cl~~~~~---~~~~~~CP~C 112 (550)
...|.|.+|.+.+. + -....| +|-||-.|-+..+. ....+.||.=
T Consensus 13 ~a~l~CtlC~erLE---d--tHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG 64 (93)
T 2cs3_A 13 SGPLCCTICHERLE---D--THFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64 (93)
T ss_dssp CCSCCCSSSCSCCS---S--TTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred CCeeEeecchhhhc---c--CceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence 35689999999999 6 555555 69999999988765 2345667763
No 312
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=73.12 E-value=48 Score=29.07 Aligned_cols=31 Identities=16% Similarity=0.077 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 319 TGDQARAKVHAYFNHLRESLLVQEAAATSAV 349 (550)
Q Consensus 319 ~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l 349 (550)
+++.++.++.-+.++|+..+...-.++-..|
T Consensus 112 ~~e~lr~~l~Py~~el~~~~~~~~e~Lr~~L 142 (185)
T 3r2p_A 112 EMELYRQKVEPLRAELQEGARQKLHELQEKL 142 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5555555566666655555554444443333
No 313
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=72.90 E-value=62 Score=36.95 Aligned_cols=23 Identities=9% Similarity=-0.165 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 360 LVQLHDDMGFWLQEVAKLYLKCE 382 (550)
Q Consensus 360 l~~~~~~l~~~~~~l~~~~~~~e 382 (550)
|++.+..|+.+...|+..++.++
T Consensus 1021 L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1021 TEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444443333333
No 314
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=72.45 E-value=1.9 Score=28.78 Aligned_cols=39 Identities=28% Similarity=0.605 Sum_probs=27.5
Q ss_pred CCCCccccccccccccchhhhhHhhhhh-cCCCcccCCcccccCC
Q psy15732 170 KCDEDESHIAVLYCTVCASHLCEQCASD-SHATRTLQKHRRIPLS 213 (550)
Q Consensus 170 ~C~~~~~~~A~~~C~~C~~~lC~~C~~~-h~~~~~~~~H~~~~~~ 213 (550)
.|..........||.+|...+|..|... -|+ +|.+++++
T Consensus 8 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~-----~H~~~~l~ 47 (48)
T 3ddt_A 8 MCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK-----ACEVAPLQ 47 (48)
T ss_dssp BCSSSTTSBCCEEETTTTEEECHHHHHHSTTT-----TSCEEECC
T ss_pred cCCCCCCccccEEcCCCCeeEcccccCCCcCC-----CCcEEeCC
Confidence 4666555667899999999999999743 333 46665543
No 315
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=72.26 E-value=67 Score=41.10 Aligned_cols=14 Identities=14% Similarity=0.095 Sum_probs=6.6
Q ss_pred chhhhhHhhhhhcC
Q psy15732 186 CASHLCEQCASDSH 199 (550)
Q Consensus 186 C~~~lC~~C~~~h~ 199 (550)
|-.+|-..|...-|
T Consensus 1766 l~~~Fi~rvr~NLH 1779 (3245)
T 3vkg_A 1766 LYKYFTSQVRRNLH 1779 (3245)
T ss_dssp HHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHcCE
Confidence 33445555554444
No 316
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=71.47 E-value=47 Score=37.92 Aligned_cols=22 Identities=9% Similarity=0.016 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy15732 355 ERLGCLVQLHDDMGFWLQEVAK 376 (550)
Q Consensus 355 ~~~~~l~~~~~~l~~~~~~l~~ 376 (550)
.++..|.+....|++++..++.
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 317
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=70.83 E-value=7.1 Score=30.13 Aligned_cols=49 Identities=16% Similarity=0.298 Sum_probs=32.2
Q ss_pred CCcceeccccccccccCCCCcEEe--c--CC-CcchhhhHhhcccCCCccCCCCCCCccc
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLL--H--CG-HTVCLACLLRLPIKDDTITCPFDRQPTP 117 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l--~--Cg-H~fC~~Cl~~~~~~~~~~~CP~Cr~~~~ 117 (550)
.+...| +|.+... . .++. . |. .-|...|+.-.......+.||.|+....
T Consensus 34 ~e~~yC-iC~~~~~---g--~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 34 NEPTYC-LCHQVSY---G--EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCCBCS-TTCCBCC---S--CCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCCS
T ss_pred CCCcEE-ECCCCCC---C--CEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcCC
Confidence 456788 9999876 4 4333 4 55 4688888863222345788999987643
No 318
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=70.71 E-value=2 Score=29.28 Aligned_cols=40 Identities=28% Similarity=0.587 Sum_probs=30.3
Q ss_pred CCCCccccccccccccchhhhhHhhhh-hcCCCcccCCcccccCCCC
Q psy15732 170 KCDEDESHIAVLYCTVCASHLCEQCAS-DSHATRTLQKHRRIPLSEK 215 (550)
Q Consensus 170 ~C~~~~~~~A~~~C~~C~~~lC~~C~~-~h~~~~~~~~H~~~~~~~~ 215 (550)
.|.... .....||.+|...+|..|.. ..| +.|.++++.+.
T Consensus 10 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H-----~~H~~~~l~ea 50 (53)
T 2did_A 10 LCPQHH-EALSLFCYEDQEAVCLICAISHTH-----RAHTVVPLSGP 50 (53)
T ss_dssp BCTTTC-CBCCEEESSSCSEECHHHHTSSTT-----TTSCEEECCCT
T ss_pred cChhhC-CeeeEEeCCCCeEEeccccCCCCC-----CCCcEeeHHHH
Confidence 477665 56788999999999999986 334 35777777654
No 319
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=70.69 E-value=2.4 Score=32.11 Aligned_cols=34 Identities=21% Similarity=0.464 Sum_probs=24.8
Q ss_pred ccceeecccccCCccccccccccccccccccCCCCccc
Q psy15732 229 IAEFICLEEHCQTSAQYPPLMCFICKDYGRHKTHKHAL 266 (550)
Q Consensus 229 ~l~~fC~~~~C~~~~~c~~~iC~~C~~~~~H~~H~~~~ 266 (550)
...|.|.+ |..+.. -.||..|...+.|.+|.+..
T Consensus 19 e~~Y~C~~--C~~d~t--cvlC~~CF~~s~H~gH~~~~ 52 (82)
T 3nis_A 19 EPLYRCHE--CGCDDT--CVLCIHCFNPKDHVNHHVCT 52 (82)
T ss_dssp CEEEEETT--TBSSTT--CCBCTTTCCGGGGTTSCEEE
T ss_pred CEEEEeec--cCCCCC--ceEchhhCCCCCcCCceEEE
Confidence 46688988 543333 36899999888999998753
No 320
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=70.55 E-value=39 Score=26.91 Aligned_cols=46 Identities=7% Similarity=-0.019 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 320 GDQARAKVHAYFNHLRESLLVQEAAATSAVDMFVRERLGCLVQLHD 365 (550)
Q Consensus 320 ~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~~~~ 365 (550)
.+..+.++...+++-.+.+.+.-..++..++.+...+...++...+
T Consensus 55 HE~kklqLkse~e~E~ae~k~KYD~~lqe~ese~~~kkK~le~~~~ 100 (115)
T 3vem_A 55 FEEKKSILKAELERKMAEVQAEFRRKFHEVEAEHNTRTTKIEKDKN 100 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555666666666777777777666666655543
No 321
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=70.32 E-value=0.86 Score=45.52 Aligned_cols=49 Identities=16% Similarity=0.141 Sum_probs=30.7
Q ss_pred CCCeEEEEecCCCC--CC---CCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHH
Q psy15732 480 KDAALLLLANKQDI--PG---CETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGL 534 (550)
Q Consensus 480 ~~~pili~~NK~Dl--~~---~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f 534 (550)
...|+++++||.|. .+ ..-...+.+++. ..+..++++||+++.+|.+++
T Consensus 200 t~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~------~~g~~vv~iSAk~E~el~eL~ 253 (368)
T 2dby_A 200 TAKPVIYVANVAEEDLPDGRGNPQVEAVRRKAL------EEGAEVVVVSARLEAELAELS 253 (368)
T ss_dssp GGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHH------HHTCEEEEECHHHHHHHHTSC
T ss_pred hcCCeEEeccccHHhhcccchhhHHHHHHHHHH------HcCCeEEEeechhHHHHHHhc
Confidence 45899999999974 22 112344444333 223578999999866655443
No 322
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=69.85 E-value=9.2 Score=41.68 Aligned_cols=26 Identities=15% Similarity=-0.006 Sum_probs=22.5
Q ss_pred EEEEEecccCCCCHHHHHHHHHHHHH
Q psy15732 517 WHIQACNAQSGEGLHEGLDWLSRQLI 542 (550)
Q Consensus 517 ~~~~~~SA~~g~gi~e~f~~l~~~~~ 542 (550)
.+++..||.+|.|+...++.|...+.
T Consensus 265 ~pv~~gsa~~~~gv~~lLd~i~~~lP 290 (709)
T 4fn5_A 265 VPAVCGSSFKNKGVPLVLDAVIDYLP 290 (709)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHSC
T ss_pred eeeeeeecccCCchHHHHHHHHhhCC
Confidence 56788999999999999999988763
No 323
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=69.80 E-value=1.6 Score=32.40 Aligned_cols=34 Identities=18% Similarity=0.514 Sum_probs=24.8
Q ss_pred ccceeecccccCCccccccccccccccccccCCCCccc
Q psy15732 229 IAEFICLEEHCQTSAQYPPLMCFICKDYGRHKTHKHAL 266 (550)
Q Consensus 229 ~l~~fC~~~~C~~~~~c~~~iC~~C~~~~~H~~H~~~~ 266 (550)
.+.|.|.+ |..+.. -.||..|...+.|++|.+..
T Consensus 15 e~~Y~C~~--C~~d~t--c~lC~~CF~~~~H~gH~~~~ 48 (75)
T 3ny3_A 15 EPTYSCRD--CAVDPT--CVLCMECFLGSIHRDHRYRM 48 (75)
T ss_dssp CEEEEETT--TBSSTT--CCBCHHHHHTSGGGGSCEEE
T ss_pred CEEEECcc--CCCCCC--eeEChHHCCCCCcCCceEEE
Confidence 56788988 543222 37899999888999998754
No 324
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=67.30 E-value=78 Score=33.41 Aligned_cols=9 Identities=11% Similarity=0.261 Sum_probs=4.2
Q ss_pred hhhHhhccc
Q psy15732 94 LACLLRLPI 102 (550)
Q Consensus 94 ~~Cl~~~~~ 102 (550)
+.||..++.
T Consensus 223 R~~I~~~F~ 231 (592)
T 1f5n_A 223 RLCIRKFFP 231 (592)
T ss_dssp HHHHHHHCS
T ss_pred HHHHHHhCC
Confidence 345555443
No 325
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=66.34 E-value=2.7 Score=31.80 Aligned_cols=41 Identities=22% Similarity=0.571 Sum_probs=31.5
Q ss_pred CCCCccccccccccccchhhhhHhhhh-hcCCCcccCCcccccCCCC
Q psy15732 170 KCDEDESHIAVLYCTVCASHLCEQCAS-DSHATRTLQKHRRIPLSEK 215 (550)
Q Consensus 170 ~C~~~~~~~A~~~C~~C~~~lC~~C~~-~h~~~~~~~~H~~~~~~~~ 215 (550)
.|.......-..||.+|...+|..|.. ..|+ +|.++++.+.
T Consensus 20 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~-----~H~~~~l~ea 61 (84)
T 2dja_A 20 TCLDHENEKVNMYCVSDDQLICALCKLVGRHR-----DHQVASLNDR 61 (84)
T ss_dssp CCSSCSSSCCCEEETTTTEEECHHHHHTSTTT-----TCCBCCCCSS
T ss_pred cCcCcCCccccEEcCCCCceEcccCcCCCCCC-----CCCccCHHHH
Confidence 477665666889999999999999987 3443 5777777664
No 326
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=65.89 E-value=70 Score=28.13 Aligned_cols=18 Identities=17% Similarity=0.006 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy15732 365 DDMGFWLQEVAKLYLKCE 382 (550)
Q Consensus 365 ~~l~~~~~~l~~~~~~~e 382 (550)
+.++.........+..++
T Consensus 119 DdlEr~~R~~~~SleD~e 136 (189)
T 2v71_A 119 DDLERAKRATIMSLEDFE 136 (189)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhHHHHH
Confidence 333333333333333333
No 327
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=65.87 E-value=1.2e+02 Score=30.79 Aligned_cols=12 Identities=25% Similarity=0.606 Sum_probs=7.0
Q ss_pred Ccccccceeecc
Q psy15732 225 HPTNIAEFICLE 236 (550)
Q Consensus 225 H~~~~l~~fC~~ 236 (550)
|..+.+-.||.+
T Consensus 72 ~~~~~~G~~CPT 83 (464)
T 1m1j_B 72 HPLDELGVLCPT 83 (464)
T ss_dssp CSSTTTCEEEEC
T ss_pred ccCCCccCcCCC
Confidence 333466777755
No 328
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=64.92 E-value=10 Score=35.43 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=14.7
Q ss_pred CeEEEEecCCCCC--CCCCHHH
Q psy15732 482 AALLLLANKQDIP--GCETVES 501 (550)
Q Consensus 482 ~pili~~NK~Dl~--~~~~~~~ 501 (550)
.|++||+||+|+. +....++
T Consensus 152 ~~~ivv~nK~Dl~~~~~~~~e~ 173 (262)
T 3def_A 152 CKTLLVLTHAQFSPPDELSYET 173 (262)
T ss_dssp GGEEEEEECTTCCCSTTCCHHH
T ss_pred cCEEEEEeCcccCCCCCccHHH
Confidence 4999999999994 3344444
No 329
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=62.61 E-value=6.4 Score=38.99 Aligned_cols=42 Identities=12% Similarity=-0.002 Sum_probs=25.8
Q ss_pred cCCCeEEEEecCCCCCC--CCCHHHHHHhcCCCcccCCCcEEEEEecccC
Q psy15732 479 LKDAALLLLANKQDIPG--CETVESITEAFDLYKLCCGRSWHIQACNAQS 526 (550)
Q Consensus 479 ~~~~pili~~NK~Dl~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~ 526 (550)
....|+++++||.|..- ..-...+.++.. ..+..++++||+.
T Consensus 197 lt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~------~~~~~~i~~sA~~ 240 (363)
T 1jal_A 197 LTLKPTMYIANVNEDGFENNPYLDRVREIAA------KEGAVVVPVCAAI 240 (363)
T ss_dssp STTSCEEEEEECCTTCSSSCHHHHHHHHHHH------HTTCEEEEECHHH
T ss_pred ccCCcEEEEEecccccccccHHHHHHHHHHH------HcCCCEEEechHH
Confidence 35589999999998642 112344444332 2235788899764
No 330
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=60.15 E-value=1e+02 Score=28.03 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 319 TGDQARAKVHAYFNHLRESLLVQEAAATSAVDMFVRERLGC 359 (550)
Q Consensus 319 ~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~ 359 (550)
.++..++.+.+.|++....|+++-..--++|.+.....+..
T Consensus 57 ~Ae~~k~~m~~rFQ~~v~sLEqE~a~ErqqL~etH~qRV~a 97 (239)
T 3k66_A 57 GAEKFKSQMNARFQKTVSSLEEEHKRMRKEIEAVHEERVQA 97 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 67788999999999999999888777666666666655544
No 331
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=59.67 E-value=9.3 Score=26.79 Aligned_cols=41 Identities=20% Similarity=0.410 Sum_probs=30.2
Q ss_pred ceeccccccccccCCCCcEEe---cCCCcchhhhHhhcccCCCccCCCCCC
Q psy15732 66 LECRVCEDIFLTQGDKVPRLL---HCGHTVCLACLLRLPIKDDTITCPFDR 113 (550)
Q Consensus 66 l~C~iC~~~~~~~~~~~P~~l---~CgH~fC~~Cl~~~~~~~~~~~CP~Cr 113 (550)
..|--|+..|. + +... .|++.||..|=.=.-+ ....||.|.
T Consensus 16 ~~C~~C~~~~~---~--~~~y~C~~C~~~FC~dCD~fiHe--~Lh~CPgC~ 59 (59)
T 1z60_A 16 RFCYGCQGELK---D--QHVYVCAVCQNVFCVDCDVFVHD--SLHSCPGCI 59 (59)
T ss_dssp CEETTTTEECT---T--SEEECCTTTTCCBCHHHHHTTTT--TSCSSSTTC
T ss_pred CcccccCcccC---C--CccEECCccCcCcccchhHHHHh--hccCCcCCC
Confidence 46999999997 5 4322 7999999999754433 556799883
No 332
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=59.07 E-value=12 Score=35.07 Aligned_cols=14 Identities=0% Similarity=0.048 Sum_probs=12.4
Q ss_pred CeEEEEecCCCCCC
Q psy15732 482 AALLLLANKQDIPG 495 (550)
Q Consensus 482 ~pili~~NK~Dl~~ 495 (550)
+|++||+||+|+..
T Consensus 155 ~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 155 NKAIVALTHAQFSP 168 (270)
T ss_dssp GGEEEEEECCSCCC
T ss_pred cCEEEEEECcccCC
Confidence 69999999999954
No 333
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=58.37 E-value=37 Score=32.59 Aligned_cols=45 Identities=11% Similarity=0.164 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 319 TGDQARAKVHAYFNHLRESLLVQEAAATSAVDMFVRERLGCLVQL 363 (550)
Q Consensus 319 ~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~~ 363 (550)
+.++++.++..+.++|+..+...-++|-..|.-........+...
T Consensus 137 ~~eelr~kL~Py~~EL~~~~~~~~eeLr~~L~py~eeLr~kl~~~ 181 (307)
T 2l7b_A 137 STEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGAREGAERG 181 (307)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHH
Confidence 666666666666666666666655555555544433333333333
No 334
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=57.13 E-value=3.7 Score=31.32 Aligned_cols=36 Identities=22% Similarity=0.498 Sum_probs=24.1
Q ss_pred cceeccccccccccCCCCcEEec-CCCcchhhhHhhc
Q psy15732 65 ALECRVCEDIFLTQGDKVPRLLH-CGHTVCLACLLRL 100 (550)
Q Consensus 65 ~l~C~iC~~~~~~~~~~~P~~l~-CgH~fC~~Cl~~~ 100 (550)
..-||-|...+...++..++.-+ |++.||..|-..|
T Consensus 25 ~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 25 FLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp EECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred EeECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 33599888766532121234555 9999999999886
No 335
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=56.73 E-value=1.7e+02 Score=29.64 Aligned_cols=24 Identities=4% Similarity=0.068 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 283 SNVQHLIEEITESVNTVDLVVSKI 306 (550)
Q Consensus 283 ~~l~~~~~~~~~~~~~~~~~~~~l 306 (550)
..+.+.+...+......+......
T Consensus 370 ~~le~~~~~~~~~~~~~~~~~~~~ 393 (487)
T 3oja_A 370 KALDEQVSNGRRAHAELDGTLQQA 393 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHh
Confidence 333444444444444444444443
No 336
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=56.37 E-value=88 Score=31.91 Aligned_cols=14 Identities=14% Similarity=0.064 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q psy15732 288 LIEEITESVNTVDL 301 (550)
Q Consensus 288 ~~~~~~~~~~~~~~ 301 (550)
+..+++..+...++
T Consensus 368 ~~~~le~~~~~~~~ 381 (487)
T 3oja_A 368 KKKALDEQVSNGRR 381 (487)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 337
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=55.84 E-value=5.2 Score=30.81 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=26.6
Q ss_pred CcceeccccccccccCCCCcEEecCCCcchhhhHhhcc
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLP 101 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~ 101 (550)
+...|.+|...|... .|.-.--.||+.||..|.....
T Consensus 19 ~~~~C~~C~~~F~~~-~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFT-KRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GCCBCTTTCCBCCSS-SCCEECTTTCCEECGGGSCEEE
T ss_pred cCCcCcCCCCcccch-hhCccccCCCCEECCcccCCee
Confidence 446899999999854 3222223899999999987653
No 338
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=55.65 E-value=77 Score=25.25 Aligned_cols=9 Identities=11% Similarity=-0.130 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy15732 332 NHLRESLLV 340 (550)
Q Consensus 332 ~~l~~~L~~ 340 (550)
..|...+..
T Consensus 48 ~~L~~~~q~ 56 (112)
T 1x79_B 48 SALVLRAQA 56 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 339
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=55.60 E-value=1.2e+02 Score=27.67 Aligned_cols=78 Identities=10% Similarity=0.140 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 267 VEIEAENLRSYVKNASSNVQHLIEEITES-VNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHLRESLLVQEAAA 345 (550)
Q Consensus 267 l~~a~~~~~~~l~~~l~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~l~~~L~~~e~~l 345 (550)
+.-...+++..+...+..++.++.-+-.. ...+......++. ......++++..+....+.++..|.-.-.++
T Consensus 97 l~Py~~el~~~~~~~~eelr~~L~P~~eel~~~~~~~~eel~~------~L~p~~eelr~kl~~~veelk~~l~P~~ee~ 170 (243)
T 2a01_A 97 VQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQE------KLSPLGEEMRDRARAHVDALRTHLAPYSDEL 170 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCC------SCCSSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHH------HHHhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 44445666777777777777665544333 3445555555544 4555777888888888888777766544444
Q ss_pred HHHHH
Q psy15732 346 TSAVD 350 (550)
Q Consensus 346 l~~l~ 350 (550)
-..++
T Consensus 171 r~kl~ 175 (243)
T 2a01_A 171 RQRLA 175 (243)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 340
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=55.54 E-value=61 Score=28.36 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy15732 272 ENLRSYVKNASSNVQHL 288 (550)
Q Consensus 272 ~~~~~~l~~~l~~l~~~ 288 (550)
+.++..+...+..++.+
T Consensus 81 ~~Lr~~l~kdlee~r~~ 97 (185)
T 3r2p_A 81 EGLRQEMSKDLEEVKAK 97 (185)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHH
Confidence 34444444444444433
No 341
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=55.50 E-value=95 Score=26.26 Aligned_cols=23 Identities=13% Similarity=0.081 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy15732 363 LHDDMGFWLQEVAKLYLKCEQMI 385 (550)
Q Consensus 363 ~~~~l~~~~~~l~~~~~~~e~~l 385 (550)
..+.....+.++..+...+...+
T Consensus 122 ~leeyK~Kl~rv~~vkkeL~~hi 144 (152)
T 4fla_A 122 KLEEYKQKLARVTQVRKELKSHI 144 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444444433
No 342
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=55.37 E-value=70 Score=24.73 Aligned_cols=31 Identities=13% Similarity=0.206 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 319 TGDQARAKVHAYFNHLRESLLVQEAAATSAV 349 (550)
Q Consensus 319 ~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l 349 (550)
.++..+..|....+.|-..|=++-..++..-
T Consensus 44 ~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a 74 (97)
T 2eqb_B 44 KAEEEADKLNKEVEDLTASLFDEANNMVADA 74 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666777766666655555555443
No 343
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=55.07 E-value=96 Score=30.90 Aligned_cols=28 Identities=7% Similarity=0.255 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 275 RSYVKNASSNVQHLIEEITESVNTVDLV 302 (550)
Q Consensus 275 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 302 (550)
+.-|.+....+...+++++..+..+...
T Consensus 26 ~d~L~kye~~V~~~l~~L~~~l~~isn~ 53 (411)
T 3ghg_C 26 ADFLSTYQTKVDKDLQSLEDILHQVENK 53 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchhhHHHHHHHHHHHHHhh
Confidence 3344444444444444444444444333
No 344
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=54.50 E-value=41 Score=29.80 Aligned_cols=27 Identities=11% Similarity=0.177 Sum_probs=8.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 319 TGDQARAKVHAYFNHLRESLLVQEAAA 345 (550)
Q Consensus 319 ~~~~~~~~I~~~f~~l~~~L~~~e~~l 345 (550)
..+++..++....+.+++.|...-.++
T Consensus 85 ~~~e~~~~l~~~~e~lr~~l~kdlEel 111 (191)
T 1nfn_A 85 VAEETRARLSKELQAAQARLGADMEDV 111 (191)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444333333
No 345
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=53.03 E-value=16 Score=36.39 Aligned_cols=51 Identities=16% Similarity=0.166 Sum_probs=37.2
Q ss_pred CCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHH
Q psy15732 480 KDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 480 ~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~ 541 (550)
..+|.++++||+|.. +.+++....... .+++.|+..+.|++++.+.+.+.+
T Consensus 248 ~~~p~i~v~nKid~~---~~eele~l~~~~--------~~~~is~~~e~gLd~Li~~~y~~L 298 (376)
T 4a9a_A 248 RYMPAIYVLNKIDSL---SIEELELLYRIP--------NAVPISSGQDWNLDELLQVMWDRL 298 (376)
T ss_dssp EEECEEEEEECGGGS---CHHHHHHHTTST--------TEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hccceEEEEeccccc---CHHHHHHHhccc--------chhhhhhhhcccchhHHHHHHHHc
Confidence 347999999999964 446655543321 356799999999999888777665
No 346
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=52.97 E-value=77 Score=27.23 Aligned_cols=18 Identities=17% Similarity=0.442 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHHHHHHHH
Q psy15732 319 TGDQARAKVHAYFNHLRE 336 (550)
Q Consensus 319 ~~~~~~~~I~~~f~~l~~ 336 (550)
+.++++.++...+++|+.
T Consensus 129 ~~EelR~kl~P~~eeL~~ 146 (165)
T 1gs9_A 129 STEELRVRLASHLRKLRK 146 (165)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 347
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=52.70 E-value=68 Score=23.80 Aligned_cols=9 Identities=11% Similarity=0.043 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q psy15732 367 MGFWLQEVA 375 (550)
Q Consensus 367 l~~~~~~l~ 375 (550)
+...+..|+
T Consensus 64 ~~~ql~~LE 72 (79)
T 4abm_A 64 IDGTLSTIE 72 (79)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 348
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=51.91 E-value=3.2 Score=32.06 Aligned_cols=41 Identities=29% Similarity=0.615 Sum_probs=29.9
Q ss_pred ceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 66 LECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 66 l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
+.||.|...+. +. =++.+|..|-..+.. ...||.|.+++..
T Consensus 33 ~~CP~Cq~eL~------~~---g~~~hC~~C~~~f~~---~a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLD------QD---NGHARCRSCGEFIEM---KALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEE------EE---TTEEEETTTCCEEEE---EEECTTTCSBCEE
T ss_pred ccCccCCCcce------ec---CCEEECccccchhhc---cccCcchhhHHHH
Confidence 89999999887 22 134458888876543 4569999998764
No 349
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=51.64 E-value=16 Score=26.57 Aligned_cols=49 Identities=16% Similarity=0.298 Sum_probs=32.9
Q ss_pred CCcceeccccccccccCCCCcEEe--c--CC-CcchhhhHhhcccCCCccCCCCCCCccc
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLL--H--CG-HTVCLACLLRLPIKDDTITCPFDRQPTP 117 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l--~--Cg-H~fC~~Cl~~~~~~~~~~~CP~Cr~~~~ 117 (550)
.+...| +|.+... . .++. . |. .-|...|+.-.........||.|+....
T Consensus 14 ~~~~~C-~C~~~~~---g--~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 14 NEPTYC-LCHQVSY---G--EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp TSCCCS-TTCCCSC---S--SEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCSS
T ss_pred CCCCEE-ECCCCCC---C--CEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCcccc
Confidence 456788 8998866 4 5444 4 65 5788888863322346788999987543
No 350
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=51.15 E-value=83 Score=24.29 Aligned_cols=24 Identities=13% Similarity=0.041 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 323 ARAKVHAYFNHLRESLLVQEAAAT 346 (550)
Q Consensus 323 ~~~~I~~~f~~l~~~L~~~e~~ll 346 (550)
....|...+++...+|.+.+-++-
T Consensus 35 ~i~~ie~~ldEA~ell~qMelE~~ 58 (97)
T 3onj_A 35 TLKHVEQQQDELFDLLDQMDVEVN 58 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556655555555555443
No 351
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=51.04 E-value=13 Score=24.96 Aligned_cols=45 Identities=27% Similarity=0.510 Sum_probs=29.9
Q ss_pred eeccccccccccCCCCcEEe--cCCCcchhhhHhhccc--CCCccCCCCCCCc
Q psy15732 67 ECRVCEDIFLTQGDKVPRLL--HCGHTVCLACLLRLPI--KDDTITCPFDRQP 115 (550)
Q Consensus 67 ~C~iC~~~~~~~~~~~P~~l--~CgH~fC~~Cl~~~~~--~~~~~~CP~Cr~~ 115 (550)
.|.+|.+.-.. + .+++ .|...|...|+..-+. ..+...||.|...
T Consensus 2 ~C~vC~~~~~~--~--~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGED--D--KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCC--S--CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCC--C--CEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 47888765431 2 3444 7888999999965443 2346789999764
No 352
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=50.97 E-value=22 Score=25.51 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=32.9
Q ss_pred CcceeccccccccccCCCCcEEe--cCCCcchhhhHhhcccC--CCccCCCCCCCcc
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLL--HCGHTVCLACLLRLPIK--DDTITCPFDRQPT 116 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l--~CgH~fC~~Cl~~~~~~--~~~~~CP~Cr~~~ 116 (550)
..-.|.+|.+. . -+++ .|...|...|+...+.. .+...||.|....
T Consensus 11 ~~~~C~vC~~~-----~--~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG-----T--DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC-----T--TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC-----C--eEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 45679999752 3 3444 79999999999765542 3557899997654
No 353
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=50.65 E-value=15 Score=29.36 Aligned_cols=46 Identities=20% Similarity=0.306 Sum_probs=30.5
Q ss_pred CcceeccccccccccCCCCcEEe--cCCCcchhhhHhhcccC--CCccCCCCCC
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLL--HCGHTVCLACLLRLPIK--DDTITCPFDR 113 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l--~CgH~fC~~Cl~~~~~~--~~~~~CP~Cr 113 (550)
++-.|.+|.+.=.. . +.+. .|+..|...|+...... .....||.|+
T Consensus 6 ~~~~C~~C~~~g~~--~--~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDL--L--DQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCT--T--TSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCC--c--CCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 56789999876431 1 3344 78999999999765432 2456677775
No 354
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=49.70 E-value=1e+02 Score=24.85 Aligned_cols=42 Identities=2% Similarity=-0.029 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15732 267 VEIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEG 308 (550)
Q Consensus 267 l~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 308 (550)
+...++..-..++..+..+......+...+..++.....++.
T Consensus 14 ~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~ 55 (119)
T 3ol1_A 14 LGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 55 (119)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455454555555555555444454444444444444433
No 355
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=49.65 E-value=6.8 Score=32.27 Aligned_cols=36 Identities=19% Similarity=0.463 Sum_probs=25.7
Q ss_pred CcceeccccccccccCCCCcEEecCCCcchhhhHhhc
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRL 100 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~ 100 (550)
+...|.+|...|... .|.-.--.||+.||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~-~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVT-VRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSS-SCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccc-cccccCCCCCeEEChHHhCCc
Confidence 345899999999853 211222389999999998654
No 356
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=49.30 E-value=80 Score=27.13 Aligned_cols=55 Identities=11% Similarity=0.182 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 292 ITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHLRESLLVQEAAATSAVDMF 352 (550)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~ 352 (550)
+...+..+...+..+.. .+....+++...+....+.|++.|...-.++-..|.-.
T Consensus 64 l~~~ld~l~~~~~~l~~------~L~P~t~el~~~l~~~~e~Lr~~L~~d~EelR~~l~p~ 118 (165)
T 1gs9_A 64 MDETMKELKAYKSELEE------QLTPVAEETRARLSKELQAAQARLGADMEDVRGRLVQY 118 (165)
T ss_dssp HHHHHHHHHHHHHHHTT------SCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555443 34445566666666666666666655555444444433
No 357
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=49.10 E-value=7.8 Score=29.36 Aligned_cols=36 Identities=25% Similarity=0.448 Sum_probs=26.3
Q ss_pred CcceeccccccccccCCCCcEEecCCCcchhhhHhhc
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRL 100 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~ 100 (550)
+...|.+|...|... .|.-.=-.||+.||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~-~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTT-VRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTT-SCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccc-hhcccccCCCcEEChHHhCCe
Confidence 456899999999854 322222389999999998654
No 358
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.23 E-value=9.5 Score=26.59 Aligned_cols=40 Identities=23% Similarity=0.537 Sum_probs=29.2
Q ss_pred CCCCccccccccccccchhhhhHhhhh-hcCCCcccCCcccccCCCC
Q psy15732 170 KCDEDESHIAVLYCTVCASHLCEQCAS-DSHATRTLQKHRRIPLSEK 215 (550)
Q Consensus 170 ~C~~~~~~~A~~~C~~C~~~lC~~C~~-~h~~~~~~~~H~~~~~~~~ 215 (550)
.|.... .....||.+|...+|..|.. ..|+ .|.++++.+.
T Consensus 16 ~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH~-----~H~~~~l~ea 56 (59)
T 2yrg_A 16 HCARHG-EKLLLFCQEDGKVICWLCERSQEHR-----GHHTFPTSGP 56 (59)
T ss_dssp BCTTTC-CBCCEEETTTCSEECHHHHTSTTTT-----TCCEEECCSS
T ss_pred cChhhC-ceeeeecCCCCcEEecccCCCCcCC-----CCcEeeHHHH
Confidence 466554 45788999999999999987 3333 5777776654
No 359
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=48.18 E-value=1.4e+02 Score=26.16 Aligned_cols=27 Identities=7% Similarity=0.103 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15732 359 CLVQLHDDMGFWLQEVAKLYLKCEQMI 385 (550)
Q Consensus 359 ~l~~~~~~l~~~~~~l~~~~~~~e~~l 385 (550)
.+......+...+..|....+.++...
T Consensus 99 ~l~~~~~~l~~~ireLEq~NDdlEr~~ 125 (189)
T 2v71_A 99 QTRAIKEQLHKYVRELEQANDDLERAK 125 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 333444444444444444444444443
No 360
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=47.95 E-value=2.2 Score=26.27 Aligned_cols=13 Identities=15% Similarity=0.307 Sum_probs=11.4
Q ss_pred Ccceecccccccc
Q psy15732 64 LALECRVCEDIFL 76 (550)
Q Consensus 64 ~~l~C~iC~~~~~ 76 (550)
+.+.||+|+..|.
T Consensus 4 EGFiCP~C~~~l~ 16 (34)
T 3mjh_B 4 EGFICPQCMKSLG 16 (34)
T ss_dssp EEEECTTTCCEES
T ss_pred cccCCcHHHHHcC
Confidence 4689999999988
No 361
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=47.13 E-value=3e+02 Score=35.38 Aligned_cols=7 Identities=0% Similarity=-0.007 Sum_probs=3.4
Q ss_pred cCCCCcc
Q psy15732 259 HKTHKHA 265 (550)
Q Consensus 259 H~~H~~~ 265 (550)
.+.|.++
T Consensus 1886 ~~R~~yv 1892 (3245)
T 3vkg_A 1886 QGRQNYV 1892 (3245)
T ss_dssp SSCCCCC
T ss_pred hCCcccC
Confidence 3445554
No 362
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=47.01 E-value=7.9 Score=29.17 Aligned_cols=36 Identities=31% Similarity=0.612 Sum_probs=25.9
Q ss_pred CcceeccccccccccCCCCcEEecCCCcchhhhHhhc
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRL 100 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~ 100 (550)
+...|.+|...|... .|.-.=-.||..||..|....
T Consensus 18 ~~~~C~~C~~~Fs~~-~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 18 EATHCRQCEKEFSIS-RRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCBCTTTCCBCBTT-BCCEECTTTCCEECSGGGCEE
T ss_pred cCCcccCcCCcccCc-cccccCCCCCCEEChHHhCCe
Confidence 456899999999853 211222389999999998654
No 363
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=46.97 E-value=94 Score=28.54 Aligned_cols=21 Identities=24% Similarity=0.162 Sum_probs=8.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q psy15732 319 TGDQARAKVHAYFNHLRESLL 339 (550)
Q Consensus 319 ~~~~~~~~I~~~f~~l~~~L~ 339 (550)
+.+.++.++....++|+..+.
T Consensus 111 ~~eelr~~L~P~~eel~~~~~ 131 (243)
T 2a01_A 111 EMELYRQKVEPLRAELQEGAR 131 (243)
T ss_dssp HHHHHHTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333
No 364
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=46.37 E-value=1.4e+02 Score=25.65 Aligned_cols=109 Identities=9% Similarity=0.016 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-------
Q psy15732 271 AENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHLRESLLVQEA------- 343 (550)
Q Consensus 271 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~l~~~L~~~e~------- 343 (550)
++....+|...-.....+..+.+.....+.....++.. +....+.|.+.+.+.++.-.
T Consensus 12 ve~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~---------------Kr~AieAF~E~ik~FeeQ~~~qer~~~ 76 (170)
T 3l4q_C 12 VEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQM---------------KRTAIEAFNETIKIFEEQGQTQEKSSK 76 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHSSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44455556666666666666666666665555555543 23344455555554444321
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHhh
Q psy15732 344 ---------------AATSAVDMFVRERLGCLVQLHDDMGFWLQEVAKLYLKCEQMILQDDARVLT 394 (550)
Q Consensus 344 ---------------~ll~~l~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~e~~l~~~~~~~L~ 394 (550)
.-+..=.+....++..+.+....|...+.....-...+++.+..-..++++
T Consensus 77 ~~~~~f~~e~~~~E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~q 142 (170)
T 3l4q_C 77 EYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQ 142 (170)
T ss_dssp GGGSSSSSCCCSSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 001111223345556666777777777777777777777777653334444
No 365
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=46.13 E-value=5.3 Score=42.10 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=26.0
Q ss_pred EEEEeeCCCCCccchhhHHHHHHHHHHHhhccCcCCCeEEEEecCCCCCCC
Q psy15732 446 RVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC 496 (550)
Q Consensus 446 ~~~~~~~d~~D~~d~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~ 496 (550)
..+++.+|+.+ .....+...++..+.. .+.|++||+||+|+...
T Consensus 190 D~il~VvDa~~---~~~~~~~~~~l~~l~~----~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 190 DLIILLFDAHK---LEISDEFSEAIGALRG----HEDKIRVVLNKADMVET 233 (550)
T ss_dssp SEEEEEEETTS---CCCCHHHHHHHHHTTT----CGGGEEEEEECGGGSCH
T ss_pred CEEEEEEeCCc---CCCCHHHHHHHHHHHh----cCCCEEEEEECCCccCH
Confidence 34555555543 2222334455555522 34799999999999654
No 366
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=45.51 E-value=9.8 Score=27.90 Aligned_cols=34 Identities=18% Similarity=0.386 Sum_probs=24.3
Q ss_pred ceeccccccccccCCCCcEEecCCCcchhhhHhhc
Q psy15732 66 LECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRL 100 (550)
Q Consensus 66 l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~ 100 (550)
-.|.+|...|... .|.-.=-.||..||..|....
T Consensus 12 ~~C~~C~~~F~~~-~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLL-NRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTT-BCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCc-cccccCCCCCEEEcccccCCe
Confidence 4799999999853 211222389999999998643
No 367
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=44.98 E-value=6.4 Score=32.10 Aligned_cols=52 Identities=17% Similarity=0.440 Sum_probs=32.4
Q ss_pred CCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCccc
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTP 117 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~ 117 (550)
.+...|..|...|... .|.-.--.||..||..|...... ....|-.|.....
T Consensus 17 ~~~~~C~~C~~~Fs~~-~RkHHCR~CG~ifC~~Cs~~~~~--~vRVC~~C~~~~~ 68 (120)
T 1y02_A 17 GLEPSCKSCGAHFANT-ARKQTCLDCKKNFCMTCSSQVGN--GPRLCLLCQRFRA 68 (120)
T ss_dssp ---CCCTTTCCCCSSG-GGCEECTTTCCEECGGGEEC------CCEEHHHHHHHH
T ss_pred cccCcccCcCCccccc-cccccCCCCCCeeCHHHhCCCCC--CceECHHHHHHHh
Confidence 3456899999999854 32233348999999999876544 3445777765443
No 368
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=44.53 E-value=13 Score=41.28 Aligned_cols=15 Identities=20% Similarity=0.226 Sum_probs=13.2
Q ss_pred CCCeEEEEecCCCCC
Q psy15732 480 KDAALLLLANKQDIP 494 (550)
Q Consensus 480 ~~~pili~~NK~Dl~ 494 (550)
.++|++|++||+|+.
T Consensus 149 ~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 149 ERIKPVVVINKVDRA 163 (842)
T ss_dssp TTCEEEEEEECHHHH
T ss_pred cCCCeEEEEECCCcc
Confidence 358999999999985
No 369
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=44.51 E-value=15 Score=26.88 Aligned_cols=50 Identities=14% Similarity=0.188 Sum_probs=35.2
Q ss_pred CcceeccccccccccCCCCcEEe--cCCCcchhhhHhhcccC--CCccCCCCCCCccc
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLL--HCGHTVCLACLLRLPIK--DDTITCPFDRQPTP 117 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l--~CgH~fC~~Cl~~~~~~--~~~~~CP~Cr~~~~ 117 (550)
+...|++|...... + ..++ .|..-|...|+...... .....||.|.....
T Consensus 17 ~~~~C~~C~~~~~~--~--~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDG--S--PMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSS--C--CEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCC--C--CEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 45679999988751 2 3444 78888889999654432 25678999976654
No 370
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.84 E-value=6.8 Score=27.15 Aligned_cols=32 Identities=16% Similarity=0.381 Sum_probs=26.5
Q ss_pred ccCCCCccccccccccccchhhhhH-hhhhhcCC
Q psy15732 168 HIKCDEDESHIAVLYCTVCASHLCE-QCASDSHA 200 (550)
Q Consensus 168 ~~~C~~~~~~~A~~~C~~C~~~lC~-~C~~~h~~ 200 (550)
...|..|.. .+...|..|...+|. .|...|..
T Consensus 12 ~~~C~vC~~-~~kY~CPrC~~~yCSl~C~k~Hk~ 44 (56)
T 2yqq_A 12 TVVCVICLE-KPKYRCPACRVPYCSVVCFRKHKE 44 (56)
T ss_dssp CCCCTTTCS-CCSEECTTTCCEESSHHHHHHHHH
T ss_pred CCccCcCcC-CCeeeCCCCCCCeeCHHHHHHHHh
Confidence 345888888 999999999999997 78877754
No 371
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.55 E-value=9.6 Score=28.83 Aligned_cols=36 Identities=22% Similarity=0.407 Sum_probs=25.7
Q ss_pred CcceeccccccccccCCCCcEEecCCCcchhhhHhhc
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRL 100 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~ 100 (550)
+...|..|...|... .|.-.=-.||..||..|....
T Consensus 13 ~~~~C~~C~~~F~~~-~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 13 NFGNCTGCSATFSVL-KKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCSSCSSSCCCCCSS-SCCEECSSSCCEECTTTSCEE
T ss_pred CCCcCcCcCCccccc-hhhhhhcCCCcEEChhhcCCc
Confidence 446899999999854 322222389999999997653
No 372
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=42.70 E-value=18 Score=23.83 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=22.0
Q ss_pred cceecccccccccc-CCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCc
Q psy15732 65 ALECRVCEDIFLTQ-GDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQP 115 (550)
Q Consensus 65 ~l~C~iC~~~~~~~-~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~ 115 (550)
...|.+|.-.|... |+ | ..+-.-.....||.|+..
T Consensus 4 ~y~C~vCGyvyd~~~Gd--~--------------t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 4 KYVCNVCGYEYDPAEHD--N--------------VPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp CEEETTTCCEECGGGGT--T--------------CCGGGSCTTCBCTTTCCB
T ss_pred EEECCCCCeEEeCCcCC--C--------------cchhhCCCCCcCcCCCCc
Confidence 46899999888742 35 5 122222234689999865
No 373
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=42.07 E-value=2.8e+02 Score=27.88 Aligned_cols=12 Identities=17% Similarity=0.324 Sum_probs=7.1
Q ss_pred Ccccccceeecc
Q psy15732 225 HPTNIAEFICLE 236 (550)
Q Consensus 225 H~~~~l~~fC~~ 236 (550)
|..+.+-.||.+
T Consensus 67 ~~~~~fG~yCPT 78 (461)
T 3ghg_B 67 HADPDLGVLCPT 78 (461)
T ss_dssp CSSTTTCBCEEC
T ss_pred ccCcccCCcCCC
Confidence 444466677755
No 374
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=41.60 E-value=9.1 Score=29.29 Aligned_cols=36 Identities=25% Similarity=0.442 Sum_probs=25.6
Q ss_pred CcceeccccccccccCCCCcEEecCCCcchhhhHhhc
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRL 100 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~ 100 (550)
+.-.|.+|...|... .|.-.--.||+.||..|....
T Consensus 8 ~~~~C~~C~~~F~~~-~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 8 MESRCYGCAVKFTLF-KKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCSBCTTTCCBCCSS-SCEEECSSSCCEEETTTSCEE
T ss_pred cCCCCcCcCCcccCc-cccccCCCCCCEEChhHcCCc
Confidence 445899999999854 311222389999999998654
No 375
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=40.67 E-value=15 Score=28.76 Aligned_cols=47 Identities=15% Similarity=0.182 Sum_probs=31.3
Q ss_pred CcceeccccccccccCCCCcEEe--cCCCcchhhhHhhcccC-CCccCCCCCCCc
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLL--HCGHTVCLACLLRLPIK-DDTITCPFDRQP 115 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l--~CgH~fC~~Cl~~~~~~-~~~~~CP~Cr~~ 115 (550)
+...| ||...... . .++. .|..-|...|+...... ...+.||.|+..
T Consensus 27 d~vrC-iC~~~~~~--~--~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 27 DVTRC-ICGFTHDD--G--YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CBCCC-TTSCCSCS--S--CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CCEEe-ECCCccCC--C--cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 45678 89887761 2 4444 78888888888654331 246899999743
No 376
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=40.63 E-value=15 Score=29.02 Aligned_cols=31 Identities=13% Similarity=0.030 Sum_probs=20.9
Q ss_pred cEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCCC
Q psy15732 83 PRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGY 120 (550)
Q Consensus 83 P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~ 120 (550)
|+-..||++|+ ..+. ....||.|+......+
T Consensus 68 ~~C~~CG~~F~-----~~~~--kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 68 AQCRKCGFVFK-----AEIN--IPSRCPKCKSEWIEEP 98 (105)
T ss_dssp CBBTTTCCBCC-----CCSS--CCSSCSSSCCCCBCCC
T ss_pred cChhhCcCeec-----ccCC--CCCCCcCCCCCccCCc
Confidence 66668999992 1222 4467999998866543
No 377
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=39.35 E-value=1.1e+02 Score=22.23 Aligned_cols=53 Identities=11% Similarity=-0.014 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 329 AYFNHLRESLLVQEAAA-------TSAVDMFVRERLGCLVQLHDDMGFWLQEVAKLYLKC 381 (550)
Q Consensus 329 ~~f~~l~~~L~~~e~~l-------l~~l~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~ 381 (550)
..|+.|..+|.+|++.+ ++.+-+.-..+...+.+...++.++...+..+-..+
T Consensus 18 edyE~L~~LL~kREkLlk~L~~e~l~~i~EkDk~R~~~Ik~~~~~L~q~a~~~rna~ssl 77 (79)
T 2fzt_A 18 EDYETLLSLLNKRKELMEGLPKDKLSEILEKDRKRLEIIEKRKTALFQEINVIREARSSL 77 (79)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35778888888887654 444444445555566666666666666555544433
No 378
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=38.79 E-value=15 Score=31.38 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=33.8
Q ss_pred CcceeccccccccccCCCCcEEe--cCCCcchhhhHhhcccCCCccCCCCCCCc
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLL--HCGHTVCLACLLRLPIKDDTITCPFDRQP 115 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l--~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~ 115 (550)
.+-.|.+|...|..-.+ +..+ .|.|.+|..|-.. ........|-.|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~--~g~~C~~C~~~VC~~C~~~-~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLN--SRRQCLECSLFVCKSCSHA-HPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSS--CCEECTTTCCEECGGGEEC-CSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccC--CCCcCCCCCchhhcccccc-cCCCCcEeeHHHHHH
Confidence 46799999998864323 3333 8999999999842 223355668888655
No 379
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=38.44 E-value=9.6 Score=25.09 Aligned_cols=28 Identities=18% Similarity=0.142 Sum_probs=16.2
Q ss_pred ecCCCcchhhhHhhcccCCCccCCCCCCCccc
Q psy15732 86 LHCGHTVCLACLLRLPIKDDTITCPFDRQPTP 117 (550)
Q Consensus 86 l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~ 117 (550)
+.||++|=..=+. .-..+.||.|...+-
T Consensus 7 ~rCg~~fs~~el~----~lP~IrCpyCGyrii 34 (48)
T 4ayb_P 7 GKCWKTFTDEQLK----VLPGVRCPYCGYKII 34 (48)
T ss_dssp CCTTTTCCCCCSC----CCSSSCCTTTCCSCE
T ss_pred eccCCCccHHHHh----hCCCcccCccCcEEE
Confidence 3556555432221 125678999987764
No 380
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=37.96 E-value=2.2e+02 Score=25.45 Aligned_cols=46 Identities=15% Similarity=0.091 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 327 VHAYFNHLRESLLVQEAAATSAVDMFVRERLGCLVQLHDDMGFWLQ 372 (550)
Q Consensus 327 I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~~~~~l~~~~~ 372 (550)
+.+.++++...=.+.|..|+...-..-+++..+++++.++|.....
T Consensus 158 l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~Ll~~~~ 203 (213)
T 1ik9_A 158 VQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKLLNAAQ 203 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3445666666666667777777666666666666666655544333
No 381
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=37.53 E-value=3.8e+02 Score=28.08 Aligned_cols=31 Identities=6% Similarity=0.052 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 323 ARAKVHAYFNHLRESLLVQEAAATSAVDMFV 353 (550)
Q Consensus 323 ~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~ 353 (550)
.+..-.+...+|.+.++++.+.++++.+...
T Consensus 520 ~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~ 550 (592)
T 1f5n_A 520 KERSYQEHLKQLTEKMENDRVQLLKEQERTL 550 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444443333
No 382
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=37.31 E-value=1.7e+02 Score=31.42 Aligned_cols=58 Identities=3% Similarity=-0.074 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 319 TGDQARAKVHAYFNHLRESLLVQEAAATSAVDMFVRERLGCLVQLHDDMGFWLQEVAK 376 (550)
Q Consensus 319 ~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~~~~~l~~~~~~l~~ 376 (550)
..+.+.++|++.|..+...+.++-...+..++...+..+...+.....++..+.+++.
T Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 669 (695)
T 2j69_A 612 QSQVVYNAVKECFDSYEREVSKRINDDIVSRKSELDNLVKQKQTREINRESEFNRLKN 669 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 3344556666667666666666666666666655555555555555555555555555
No 383
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=36.74 E-value=1.4e+02 Score=22.94 Aligned_cols=30 Identities=10% Similarity=0.200 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 321 DQARAKVHAYFNHLRESLLVQEAAATSAVD 350 (550)
Q Consensus 321 ~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~ 350 (550)
..+++++...|..|...++.-..+|-.+|.
T Consensus 28 hQVQqELs~tfarLc~~Vd~t~~eL~~EI~ 57 (96)
T 1t3j_A 28 HQVQQEMATTFARLCQQVDMTQKHLEEEIA 57 (96)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777666665555554443
No 384
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=36.16 E-value=13 Score=26.32 Aligned_cols=51 Identities=14% Similarity=0.297 Sum_probs=33.0
Q ss_pred CCcceeccccccccccCCCCcEEe--cCCCcchhhhHhhccc---CCCccCCCCCCCcc
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLL--HCGHTVCLACLLRLPI---KDDTITCPFDRQPT 116 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l--~CgH~fC~~Cl~~~~~---~~~~~~CP~Cr~~~ 116 (550)
.+...|++|...+... . ..+- .|..=|...|+.-... ....+.||.|+...
T Consensus 4 ~e~~~C~~C~~~~~~~-~--~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 4 GSSGQCGACGESYAAD-E--FWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp SSCCCCSSSCCCCCSS-S--CEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCCccCCC-C--CEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence 4567899999998622 2 3333 6777777777743322 12568899997653
No 385
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=36.09 E-value=1.4e+02 Score=22.43 Aligned_cols=17 Identities=0% Similarity=-0.179 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy15732 363 LHDDMGFWLQEVAKLYL 379 (550)
Q Consensus 363 ~~~~l~~~~~~l~~~~~ 379 (550)
+++.++..+.+....+.
T Consensus 59 ei~~le~~i~rhk~~i~ 75 (84)
T 1gmj_A 59 EIERLQKEIERHKQSIK 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 386
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=35.81 E-value=6.8 Score=27.38 Aligned_cols=32 Identities=19% Similarity=0.388 Sum_probs=25.8
Q ss_pred cCCCCcc---ccccccccccchhhhhH-hhhhhcCC
Q psy15732 169 IKCDEDE---SHIAVLYCTVCASHLCE-QCASDSHA 200 (550)
Q Consensus 169 ~~C~~~~---~~~A~~~C~~C~~~lC~-~C~~~h~~ 200 (550)
..|..|. ...+...|..|...+|. .|...|..
T Consensus 12 ~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k~Hk~ 47 (59)
T 1x4s_A 12 GPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTHGT 47 (59)
T ss_dssp EEECSSCTTCCEEECEECTTTCCEESSHHHHHHHCC
T ss_pred CcCcCCCCCcCCCccccCcCCCCCccChHHHHHHhH
Confidence 3466675 37899999999999998 88888764
No 387
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=35.71 E-value=1.5e+02 Score=22.97 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 269 IEAENLRSYVKNASSNVQHLIEEI 292 (550)
Q Consensus 269 ~a~~~~~~~l~~~l~~l~~~~~~~ 292 (550)
+.++.+..++......+..++..+
T Consensus 15 elFe~YE~df~~l~~~i~~kl~~i 38 (102)
T 2qyw_A 15 EHFEKLHEIFRGLLEDLQGVPERL 38 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666666666666665555543
No 388
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=35.46 E-value=14 Score=27.76 Aligned_cols=31 Identities=23% Similarity=0.565 Sum_probs=23.3
Q ss_pred ccCCCCccccc---cccccccchh----hhhHhhhhhc
Q psy15732 168 HIKCDEDESHI---AVLYCTVCAS----HLCEQCASDS 198 (550)
Q Consensus 168 ~~~C~~~~~~~---A~~~C~~C~~----~lC~~C~~~h 198 (550)
.+.|+.|...+ ..+.|..|.. .||..|...-
T Consensus 21 ~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g 58 (82)
T 2fc7_A 21 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCL 58 (82)
T ss_dssp SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCC
T ss_pred cCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCc
Confidence 45688887544 4578999976 5999998764
No 389
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=35.31 E-value=10 Score=26.63 Aligned_cols=39 Identities=21% Similarity=0.363 Sum_probs=25.2
Q ss_pred CcceeccccccccccCCCCcEEec---CCCcchhhhHhhccc
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLLH---CGHTVCLACLLRLPI 102 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l~---CgH~fC~~Cl~~~~~ 102 (550)
..-.||-|.....-.+--.-++-. |++.||..|...|..
T Consensus 5 ~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred cceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 345799998887743100022333 999999999988754
No 390
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=34.81 E-value=16 Score=27.83 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=36.8
Q ss_pred cCCcceeccccccccccCCCCcEEe--cCCCcchhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 62 LELALECRVCEDIFLTQGDKVPRLL--HCGHTVCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~~~P~~l--~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
..+...|.+|...-...++ .+++ .|.-.|...|+.......+...||.|......
T Consensus 22 ~~~~~~C~vC~~~~s~~~~--~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSN--VILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEE--EEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCCCCcCCcCCCCCCCCCC--CEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 3567899999987521102 3444 78889999999765444456789999765443
No 391
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=34.78 E-value=18 Score=30.12 Aligned_cols=49 Identities=16% Similarity=0.386 Sum_probs=31.2
Q ss_pred CcceeccccccccccCCCCcEEe--cCCCcchhhhHhhccc--CCCccCCCCCCC
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLL--HCGHTVCLACLLRLPI--KDDTITCPFDRQ 114 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l--~CgH~fC~~Cl~~~~~--~~~~~~CP~Cr~ 114 (550)
..-.|.+|...|..-++ +... .|.|.+|..|-..... ......|-.|+.
T Consensus 54 ~~~~C~~C~~~~g~l~~--~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGS--ASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SSSBCSSSCCBCSTTSC--CEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCccccccCCCcccccC--CCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 46789999999942213 3333 8999999999865422 123345666654
No 392
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=34.77 E-value=33 Score=23.98 Aligned_cols=46 Identities=20% Similarity=0.398 Sum_probs=32.9
Q ss_pred CCcceeccccccccccCCCCcEEe--cCCCcchhhhHhhccc--CCCccCCCCCCCc
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLL--HCGHTVCLACLLRLPI--KDDTITCPFDRQP 115 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l--~CgH~fC~~Cl~~~~~--~~~~~~CP~Cr~~ 115 (550)
.....|.+|.+. . -+++ .|...|...|+...+. ..+...||.|...
T Consensus 9 ~~~~~C~vC~~~-----g--~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG-----G--EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC-----S--SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC-----C--cEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 356789999872 2 3444 7999999999987443 2356789999653
No 393
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=34.57 E-value=2.9e+02 Score=27.10 Aligned_cols=31 Identities=10% Similarity=0.111 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy15732 357 LGCLVQLHDDMGFWLQEVAKLYLKCEQMILQ 387 (550)
Q Consensus 357 ~~~l~~~~~~l~~~~~~l~~~~~~~e~~l~~ 387 (550)
+..+.+....|.+.+..-......+++.+..
T Consensus 214 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 244 (373)
T 3hhm_B 214 ISEIIDSRRRLEEDLKKQAAEYREIDKRMNS 244 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444445555554444444445555443
No 394
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=34.00 E-value=17 Score=37.62 Aligned_cols=59 Identities=12% Similarity=-0.068 Sum_probs=35.5
Q ss_pred CeE-EEEecCCCCCCCCC-HHHHHHhcCCCc--------ccC-CCcEEEEEecccCCCC-HHHHHHHHHHH
Q psy15732 482 AAL-LLLANKQDIPGCET-VESITEAFDLYK--------LCC-GRSWHIQACNAQSGEG-LHEGLDWLSRQ 540 (550)
Q Consensus 482 ~pi-li~~NK~Dl~~~~~-~~~i~~~~~l~~--------~~~-~~~~~~~~~SA~~g~g-i~e~f~~l~~~ 540 (550)
+|+ .||.||.|...... .-++...++++- +.. .....++.+||++|.| |.+.++|+.+.
T Consensus 240 ~~i~gvVlNK~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 240 VDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp HCCCCEEEECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cCceEEEEeCCccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 575 88899999864332 223444443211 000 0001234589999999 99999999765
No 395
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=33.95 E-value=10 Score=26.99 Aligned_cols=52 Identities=15% Similarity=0.293 Sum_probs=34.9
Q ss_pred CCcceeccccccccccCCCCcEEe--cCCCcchhhhHhhccc-----CCCccCCCCCCCcc
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLL--HCGHTVCLACLLRLPI-----KDDTITCPFDRQPT 116 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l--~CgH~fC~~Cl~~~~~-----~~~~~~CP~Cr~~~ 116 (550)
.+...|.+|.......++ .+++ .|...|...|+...+. ......||.|....
T Consensus 4 ~~~~~C~vC~~~~~~~~~--~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPN--EMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTB--CEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCC--CEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 356789999987543212 4555 8999999999876432 23556799886543
No 396
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=33.57 E-value=1.6e+02 Score=22.56 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 277 YVKNASSNVQHLIEEITESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHLRESLLVQEA 343 (550)
Q Consensus 277 ~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~f~~l~~~L~~~e~ 343 (550)
+++.....|+.-.+.++.....+......+.. =.+..+.+....|+.+.+.|..-..
T Consensus 10 Elr~Fa~~L~~F~d~Lq~~~~~L~~~f~~L~s----------WqDqkr~kFee~fe~l~s~l~~f~e 66 (94)
T 3fx7_A 10 EVREFVGHLERFKELLREEVNSLSNHFHNLES----------WRDARRDKFSEVLDNLKSTFNEFDE 66 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS----------CCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----------HhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666666666654 5556667777777766665554433
No 397
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=33.09 E-value=13 Score=33.88 Aligned_cols=36 Identities=19% Similarity=0.454 Sum_probs=25.8
Q ss_pred CcceeccccccccccCCCCcEEecCCCcchhhhHhhc
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRL 100 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~ 100 (550)
+.-.|..|...|... .|.-.--.||+.||..|....
T Consensus 160 ~~~~C~~C~~~F~~~-~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFT-NRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSS-SCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCc-ccccccCCcCCEEChHHhCCe
Confidence 346999999999854 222222389999999998654
No 398
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=32.73 E-value=13 Score=34.02 Aligned_cols=35 Identities=26% Similarity=0.510 Sum_probs=25.4
Q ss_pred cceeccccccccccCCCCcEEecCCCcchhhhHhhc
Q psy15732 65 ALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRL 100 (550)
Q Consensus 65 ~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~ 100 (550)
.-.|..|...|... .|.-.--.||+.||..|....
T Consensus 164 ~~~C~~C~~~F~~~-~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVM-TRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTT-BCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCcc-ccccccCCCcCEeChhhcCCc
Confidence 45899999999854 322233389999999998654
No 399
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=32.36 E-value=8.7 Score=28.77 Aligned_cols=37 Identities=22% Similarity=0.456 Sum_probs=23.1
Q ss_pred cceecc--ccccccccCCCCcEEe------cCCCcchhhhHhhcc
Q psy15732 65 ALECRV--CEDIFLTQGDKVPRLL------HCGHTVCLACLLRLP 101 (550)
Q Consensus 65 ~l~C~i--C~~~~~~~~~~~P~~l------~CgH~fC~~Cl~~~~ 101 (550)
..-||- |.......++..++.- .||+.||..|...|-
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYH 69 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCcccc
Confidence 556776 7665542211113333 499999999998874
No 400
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=32.34 E-value=9.2 Score=28.66 Aligned_cols=40 Identities=25% Similarity=0.605 Sum_probs=27.7
Q ss_pred ceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCccc
Q psy15732 66 LECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTP 117 (550)
Q Consensus 66 l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~ 117 (550)
+.||.|...+... . ++.+|..|-..+.. . ..||.|.+++.
T Consensus 3 ~~CP~C~~~l~~~-~--------~~~~C~~C~~~~~~--~-afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERN-G--------DTAHCETCAKDFSL--Q-ALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEEC-S--------SEEECTTTCCEEEE--E-EECSSSCSCCC
T ss_pred CCCCCCCCccccC-C--------CceECccccccCCC--c-ccCcchhhHHH
Confidence 6899999888732 1 14458888776544 2 26999998864
No 401
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=32.23 E-value=1.1e+02 Score=20.27 Aligned_cols=31 Identities=10% Similarity=0.076 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 345 ATSAVDMFVRERLGCLVQLHDDMGFWLQEVA 375 (550)
Q Consensus 345 ll~~l~~~~~~~~~~l~~~~~~l~~~~~~l~ 375 (550)
+|+++....+.....+-..++.+...+..|+
T Consensus 14 LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE 44 (48)
T 3ci9_A 14 LLQQMQDKFQTISDQIIGRIDDMSSRIDDLE 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4444444444444444444444444444443
No 402
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=32.21 E-value=1.5e+02 Score=21.63 Aligned_cols=52 Identities=8% Similarity=-0.013 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 327 VHAYFNHLRESLLVQEAAATSAVDMFVRERLGCLVQLHDDMGFWLQEVAKLY 378 (550)
Q Consensus 327 I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 378 (550)
-..+|-+.+..--.+--+.|...+...+.++..+...+..++..+.-|+.-+
T Consensus 17 ~nRe~ie~is~~I~~~v~FLN~F~~sce~KLa~ln~kL~~lE~~L~iLEAkl 68 (73)
T 3pp5_A 17 EQREFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLTILDRQVDYLEATF 68 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555666666667777777766666666655554433
No 403
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=32.14 E-value=22 Score=25.83 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=35.0
Q ss_pred CCcceeccccccccccCCCCcEEe--cCCCcchhhhHhhcccCCCccCCCCCCCc
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLL--HCGHTVCLACLLRLPIKDDTITCPFDRQP 115 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l--~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~ 115 (550)
.+...|.+|.+.-...++ ..++ .|.-.|-..|+.......+...||.|...
T Consensus 14 ~~~~~C~vC~~~~s~~~~--~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSN--VILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSS--CEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCC--CEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 456789999887522113 4555 89999999999754333456779988654
No 404
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=30.74 E-value=26 Score=24.53 Aligned_cols=46 Identities=26% Similarity=0.397 Sum_probs=31.3
Q ss_pred CCcceeccccccccccCCCCcEEe--cCCCcchhhhHhhccc--CCCccCCCCCCCc
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLL--HCGHTVCLACLLRLPI--KDDTITCPFDRQP 115 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l--~CgH~fC~~Cl~~~~~--~~~~~~CP~Cr~~ 115 (550)
.+...|.+|.+. . -+++ .|...|...|+...+. ..+...||.|...
T Consensus 7 ~~~~~C~vC~~~-----g--~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDG-----G--ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCC-----S--SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCC-----C--CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 356779999852 2 2333 7888899999975443 2345679999765
No 405
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=29.63 E-value=80 Score=24.67 Aligned_cols=67 Identities=12% Similarity=0.175 Sum_probs=41.1
Q ss_pred HHHHHHHhhccCcCCCeEEEEecCCCCCCCCCHHHHHHhcCCCcccCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhcC
Q psy15732 467 LAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIAAGV 546 (550)
Q Consensus 467 ~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~g~gi~e~f~~l~~~~~~~~~ 546 (550)
++|+..++......++-++|+.|..|-.. ..+..+.+. ..+..+-.+|. -+|.+..+...+.+.+.
T Consensus 89 kewikdfieeakergvevfvvynnkdddr---rkeaqqefr------sdgvdvrtvsd-----keelieqvrrfvrkvgs 154 (162)
T 2l82_A 89 KEWIKDFIEEAKERGVEVFVVYNNKDDDR---RKEAQQEFR------SDGVDVRTVSD-----KEELIEQVRRFVRKVGS 154 (162)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSCHHH---HHHHHHHHC------CSSCEEEEESS-----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCcEEEEEecCCCchh---HHHHHHHhh------hcCceeeecCC-----HHHHHHHHHHHHHHhcc
Confidence 68888888776677888888877655321 244455554 33445555554 35666666666666554
Q ss_pred C
Q psy15732 547 N 547 (550)
Q Consensus 547 ~ 547 (550)
+
T Consensus 155 l 155 (162)
T 2l82_A 155 L 155 (162)
T ss_dssp S
T ss_pred c
Confidence 4
No 406
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=29.39 E-value=13 Score=25.90 Aligned_cols=46 Identities=17% Similarity=0.303 Sum_probs=30.0
Q ss_pred CCcceeccccccccccCCCCcEEe--c--CC-CcchhhhHhhcccCCCccCCCCCCC
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLL--H--CG-HTVCLACLLRLPIKDDTITCPFDRQ 114 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l--~--Cg-H~fC~~Cl~~~~~~~~~~~CP~Cr~ 114 (550)
.+...| +|.+... . .++. . |. .-|...|+.-.....+...||.|+.
T Consensus 7 ~e~~yC-~C~~~~~---g--~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSY---G--EMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECC---S--EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCC---C--CeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 356677 9998866 4 4444 4 65 5888888863322335678998864
No 407
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=28.93 E-value=12 Score=37.97 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=0.0
Q ss_pred CcceeccccccccccCCCCcEEecCCCcchhhhHhhccc-----CCCccCCCCCCCcc
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPI-----KDDTITCPFDRQPT 116 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~-----~~~~~~CP~Cr~~~ 116 (550)
+.-.|..|...|... .|.-.--.||+.||..|...... ......|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~-~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLT-LRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCc-chhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 456899999999843 22223338999999999965432 12334577775543
No 408
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=28.47 E-value=1.5e+02 Score=20.70 Aligned_cols=41 Identities=7% Similarity=0.094 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15732 268 EIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEG 308 (550)
Q Consensus 268 ~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 308 (550)
..|+..++.+-......+....+.+......++..+..+..
T Consensus 11 r~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 11 KTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777777777777777776665
No 409
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=28.34 E-value=1.1e+02 Score=21.22 Aligned_cols=40 Identities=8% Similarity=0.115 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15732 269 IEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEG 308 (550)
Q Consensus 269 ~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 308 (550)
.|+...+..=...+..|......+......+...+..+..
T Consensus 11 ~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 11 IAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556555566666666666666666655555555544
No 410
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=28.17 E-value=18 Score=26.16 Aligned_cols=38 Identities=21% Similarity=0.562 Sum_probs=27.9
Q ss_pred CCCCccccccccccccchhhhhHhhhhhcCCCcccCCcccccCC
Q psy15732 170 KCDEDESHIAVLYCTVCASHLCEQCASDSHATRTLQKHRRIPLS 213 (550)
Q Consensus 170 ~C~~~~~~~A~~~C~~C~~~lC~~C~~~h~~~~~~~~H~~~~~~ 213 (550)
.|... ...-..||.+|...+|..|....|+ +|.++++.
T Consensus 20 ~C~~H-~e~l~lfC~~d~~~iC~~C~~~~H~-----~H~~~~l~ 57 (72)
T 2csv_A 20 KCPVH-GKTMELFCQTDQTCICYLCMFQEHK-----NHSTVTVE 57 (72)
T ss_dssp BCTTT-CCBCCEEESSSCCEECHHHHHTTTS-----SSCEEEHH
T ss_pred cCccc-CCceEEEeCCCCeEEccccCCCCCC-----CCCEecHH
Confidence 47766 3667889999999999999874443 46665543
No 411
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=27.86 E-value=33 Score=23.77 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=24.5
Q ss_pred cceeccccccccccCCCCcEEecCCCcchhhhHhhccc---CCCccCCCCCCCcccC
Q psy15732 65 ALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPI---KDDTITCPFDRQPTPV 118 (550)
Q Consensus 65 ~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~---~~~~~~CP~Cr~~~~~ 118 (550)
.+.|.+|...|. . ..-|..... +...+.|+.|.+.+..
T Consensus 4 py~C~~C~k~F~---~-------------~~~L~~H~~~Ht~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 4 PFFCNFCGKTYR---D-------------ASGLSRHRRAHLGYRPRSCPECGKCFRD 44 (60)
T ss_dssp CEECTTTCCEES---S-------------HHHHHHHHHHHHTCCCEECTTTCCEESS
T ss_pred CccCCCCCCEeC---C-------------HHHHHHHHHHhCCCcCeECCCCCCCcCC
Confidence 467888888887 5 222322221 3467899999988754
No 412
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=27.73 E-value=1.8e+02 Score=21.14 Aligned_cols=10 Identities=40% Similarity=0.564 Sum_probs=0.0
Q ss_pred cCCCCcccHH
Q psy15732 259 HKTHKHALVE 268 (550)
Q Consensus 259 H~~H~~~~l~ 268 (550)
|..|....++
T Consensus 7 ~~~~~~~~~~ 16 (72)
T 3nmd_A 7 HHHHGMASIE 16 (72)
T ss_dssp ----------
T ss_pred ccccchhhcc
Confidence 3445555554
No 413
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=27.49 E-value=28 Score=24.46 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=14.8
Q ss_pred cCCCCHHHHHHHHHHHH
Q psy15732 525 QSGEGLHEGLDWLSRQL 541 (550)
Q Consensus 525 ~~g~gi~e~f~~l~~~~ 541 (550)
++|.||+.+.+||..+.
T Consensus 42 at~~NvErAaDWLFSH~ 58 (63)
T 1wgn_A 42 KKGENIEQILDYLFAHS 58 (63)
T ss_dssp HHCSCHHHHHHHHHHHS
T ss_pred HcCCCHHHHHHHHHhCC
Confidence 58999999999998764
No 414
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=27.15 E-value=55 Score=20.63 Aligned_cols=14 Identities=29% Similarity=0.831 Sum_probs=11.6
Q ss_pred CCcceecccccccc
Q psy15732 63 ELALECRVCEDIFL 76 (550)
Q Consensus 63 ~~~l~C~iC~~~~~ 76 (550)
...+.|.+|...|.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (48)
T 2epr_A 10 RKQVACEICGKIFR 23 (48)
T ss_dssp CCSEEETTTTEEES
T ss_pred CcCeeCCCCCcccC
Confidence 34689999999998
No 415
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=27.13 E-value=34 Score=30.94 Aligned_cols=17 Identities=18% Similarity=0.094 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy15732 320 GDQARAKVHAYFNHLRE 336 (550)
Q Consensus 320 ~~~~~~~I~~~f~~l~~ 336 (550)
..+++..+...++.++.
T Consensus 100 ~~el~~~~~~~~e~lr~ 116 (216)
T 2lem_A 100 LDEFQKKWKEDVELYRQ 116 (216)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHH
Confidence 33334444444444333
No 416
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=26.38 E-value=2.2e+02 Score=21.88 Aligned_cols=27 Identities=11% Similarity=0.311 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 274 LRSYVKNASSNVQHLIEEITESVNTVD 300 (550)
Q Consensus 274 ~~~~l~~~l~~l~~~~~~~~~~~~~~~ 300 (550)
+...+......+...+..+...+..++
T Consensus 41 Lc~~Vd~t~~eL~~EI~~L~~eI~~LE 67 (96)
T 1t3j_A 41 LCQQVDMTQKHLEEEIARLSKEIDQLE 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444343333
No 417
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=26.36 E-value=35 Score=25.61 Aligned_cols=40 Identities=15% Similarity=0.217 Sum_probs=26.5
Q ss_pred CCcceeccccccccccCCCCcEEecCCCcchhhhHhhccc---CCCccCCCCCCCcccC
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPI---KDDTITCPFDRQPTPV 118 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~---~~~~~~CP~Cr~~~~~ 118 (550)
.+...|++|...|. . . .=|..... ....+.|+.|.+.+..
T Consensus 26 ~~~h~C~~Cgk~F~---~--~-----------~~L~~H~~~H~~~k~~~C~~C~k~F~~ 68 (85)
T 2lv2_A 26 AECHLCPVCGESFA---S--K-----------GAQERHLRLLHAAQVFPCKYCPATFYS 68 (85)
T ss_dssp CTTEECTTSCCEES---S--H-----------HHHHHHHHTTSCSSSEECTTSSCEESS
T ss_pred CCCEECCCCCCCcC---c--H-----------HHHhhhhhhccCCCccCCCCCCCEeCC
Confidence 35579999999999 6 2 22222221 3356899999888654
No 418
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=26.25 E-value=34 Score=22.49 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=23.2
Q ss_pred cceeccccccccccCCCCcEEecCCCcchhhhHhhcc---cCCCccCCCCCCCcccC
Q psy15732 65 ALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLP---IKDDTITCPFDRQPTPV 118 (550)
Q Consensus 65 ~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~---~~~~~~~CP~Cr~~~~~ 118 (550)
.+.|++|...|. . ... +.... .....+.|+.|...+..
T Consensus 4 ~~~C~~C~~~f~---~--~~~-----------l~~H~~~h~~~~~~~C~~C~~~f~~ 44 (57)
T 3uk3_C 4 SRECSYCGKFFR---S--NYY-----------LNIHLRTHTGEKPYKCEFCEYAAAQ 44 (57)
T ss_dssp -CBCTTTCCBCS---C--HHH-----------HHHHHHHHHCCCCEECSSSSCEESS
T ss_pred CccCCCCcchhC---C--hHH-----------HHHHHHHcCCCCCcCCCCCcchhCC
Confidence 468999998888 5 221 21111 12356889999887653
No 419
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=26.23 E-value=13 Score=25.31 Aligned_cols=31 Identities=32% Similarity=0.691 Sum_probs=22.8
Q ss_pred cCCCCcccc-ccccccccchhh-hhHhhhhhcC
Q psy15732 169 IKCDEDESH-IAVLYCTVCASH-LCEQCASDSH 199 (550)
Q Consensus 169 ~~C~~~~~~-~A~~~C~~C~~~-lC~~C~~~h~ 199 (550)
+.|+.|... ...+.|..|..+ ||..|.....
T Consensus 7 ~~Cd~C~~~ig~R~~C~~C~dyDLC~~C~~~~~ 39 (52)
T 1tot_A 7 YTCNECKHHVETRWHCTVCEDYDLCINCYNTKS 39 (52)
T ss_dssp EEETTTTEEESSEEEESSSSSCEECHHHHHHHC
T ss_pred EECCCCCCCCcceEEcCCCCCchhHHHHHhCCC
Confidence 346666644 256899999876 9999998854
No 420
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=26.17 E-value=53 Score=20.28 Aligned_cols=13 Identities=31% Similarity=0.554 Sum_probs=10.7
Q ss_pred Ccceecccccccc
Q psy15732 64 LALECRVCEDIFL 76 (550)
Q Consensus 64 ~~l~C~iC~~~~~ 76 (550)
..+.|++|...|.
T Consensus 9 k~~~C~~C~k~f~ 21 (45)
T 2epq_A 9 KPYSCPVCGLRFK 21 (45)
T ss_dssp CSSEETTTTEECS
T ss_pred CCCcCCCCCcccC
Confidence 3578999999888
No 421
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=26.17 E-value=17 Score=31.97 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=31.6
Q ss_pred ceeccccccccccCCCCcEEe--cCCCcchhhhHhhccc---------CCCccCCCCCCCccc
Q psy15732 66 LECRVCEDIFLTQGDKVPRLL--HCGHTVCLACLLRLPI---------KDDTITCPFDRQPTP 117 (550)
Q Consensus 66 l~C~iC~~~~~~~~~~~P~~l--~CgH~fC~~Cl~~~~~---------~~~~~~CP~Cr~~~~ 117 (550)
..||+|...|...+...+.+- .|..=|...|+.-.-. ....+.||.|+....
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 469999999984310012333 5777777788743210 012578999987643
No 422
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=25.68 E-value=60 Score=27.11 Aligned_cols=34 Identities=15% Similarity=0.326 Sum_probs=26.8
Q ss_pred CCCCccccccccccccchhhhhHhhhhhcCCCcc
Q psy15732 170 KCDEDESHIAVLYCTVCASHLCEQCASDSHATRT 203 (550)
Q Consensus 170 ~C~~~~~~~A~~~C~~C~~~lC~~C~~~h~~~~~ 203 (550)
.|..|.......-+.+=+.++|..|...|+....
T Consensus 27 ~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~ 60 (140)
T 2olm_A 27 KCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNP 60 (140)
T ss_dssp SCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSS
T ss_pred cCCCCCCCCCCceeeccCEEEchhccchhccCCC
Confidence 4777776666677777788999999999988654
No 423
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=25.33 E-value=17 Score=25.45 Aligned_cols=46 Identities=17% Similarity=0.322 Sum_probs=28.9
Q ss_pred CCcceeccccccccccCCCCcEEe--c--CC-CcchhhhHhhcccCCCccCCCCCCC
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLL--H--CG-HTVCLACLLRLPIKDDTITCPFDRQ 114 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l--~--Cg-H~fC~~Cl~~~~~~~~~~~CP~Cr~ 114 (550)
.+...| +|.+... . .++. . |. .-|...|+.-.....+...||.|..
T Consensus 8 ~e~~~C-~C~~~~~---g--~mi~CD~cdC~~~wfH~~Cvgl~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQVSY---G--EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEECC---S--EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCCEE-ECCCcCC---C--CEEEeCCCCCCCceEehhcCCCCcCCCCCEECcCccC
Confidence 345677 8998765 4 4444 4 55 5688888863222336678998854
No 424
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=25.18 E-value=3.9e+02 Score=24.36 Aligned_cols=10 Identities=30% Similarity=0.272 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q psy15732 398 EIKEAIETIE 407 (550)
Q Consensus 398 ~~~~~l~~~~ 407 (550)
.+....+++.
T Consensus 176 ~lL~~Yerir 185 (256)
T 3na7_A 176 KIYSFYERIR 185 (256)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444444
No 425
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=24.88 E-value=3.1e+02 Score=23.61 Aligned_cols=7 Identities=0% Similarity=-0.050 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy15732 276 SYVKNAS 282 (550)
Q Consensus 276 ~~l~~~l 282 (550)
.++++..
T Consensus 74 ~ql~~I~ 80 (175)
T 3lay_A 74 ATAQKIY 80 (175)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 426
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.46 E-value=45 Score=23.54 Aligned_cols=31 Identities=26% Similarity=0.592 Sum_probs=22.5
Q ss_pred cCCCCccccc---cccccccchhh-hhHhhhhhcC
Q psy15732 169 IKCDEDESHI---AVLYCTVCASH-LCEQCASDSH 199 (550)
Q Consensus 169 ~~C~~~~~~~---A~~~C~~C~~~-lC~~C~~~h~ 199 (550)
+.|+.|...+ ....|..|..+ ||..|...-.
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~ 46 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGH 46 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCCC
Confidence 5688776553 45789999654 9999998743
No 427
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=24.23 E-value=30 Score=23.53 Aligned_cols=19 Identities=11% Similarity=0.385 Sum_probs=14.5
Q ss_pred ecccCCCCHHHHHHHHHHH
Q psy15732 522 CNAQSGEGLHEGLDWLSRQ 540 (550)
Q Consensus 522 ~SA~~g~gi~e~f~~l~~~ 540 (550)
.+...+.||+.+++||.+.
T Consensus 30 lk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 30 LKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHTSCCHHHHHHHHHHH
T ss_pred HHHhCcccHHHHHHHHHHh
Confidence 3445567999999999864
No 428
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=24.04 E-value=22 Score=25.61 Aligned_cols=36 Identities=8% Similarity=-0.014 Sum_probs=26.0
Q ss_pred cCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCCC
Q psy15732 62 LELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGY 120 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~ 120 (550)
+-+.|.||+|...+... . ..+...||.|+..++..+
T Consensus 7 LLeiL~CP~ck~~L~~~-~----------------------~~g~LvC~~c~~~YPI~d 42 (67)
T 2jny_A 7 LLEVLACPKDKGPLRYL-E----------------------SEQLLVNERLNLAYRIDD 42 (67)
T ss_dssp GTCCCBCTTTCCBCEEE-T----------------------TTTEEEETTTTEEEEEET
T ss_pred HHHHhCCCCCCCcCeEe-C----------------------CCCEEEcCCCCccccCCC
Confidence 45789999999887721 1 125567999998888765
No 429
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=24.04 E-value=56 Score=23.27 Aligned_cols=28 Identities=29% Similarity=0.517 Sum_probs=21.3
Q ss_pred cCCCCccccccccccccchhhhhHhhhh
Q psy15732 169 IKCDEDESHIAVLYCTVCASHLCEQCAS 196 (550)
Q Consensus 169 ~~C~~~~~~~A~~~C~~C~~~lC~~C~~ 196 (550)
..|..|........|..|...|-..|..
T Consensus 13 ~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~ 40 (66)
T 2lri_C 13 ARCGVCGDGTDVLRCTHCAAAFHWRCHF 40 (66)
T ss_dssp CCCTTTSCCTTCEECSSSCCEECHHHHC
T ss_pred CCcCCCCCCCeEEECCCCCCceecccCC
Confidence 3477776666788899999888888865
No 430
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=24.03 E-value=20 Score=25.92 Aligned_cols=37 Identities=11% Similarity=0.114 Sum_probs=26.1
Q ss_pred cCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCCCC
Q psy15732 62 LELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYS 121 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~ 121 (550)
+-+.|.||+|...+... . ..+...||.|+..+++.+|
T Consensus 5 LL~iL~CP~ck~~L~~~-~----------------------~~~~LiC~~cg~~YPI~dG 41 (68)
T 2jr6_A 5 FLDILVCPVTKGRLEYH-Q----------------------DKQELWSRQAKLAYPIKDG 41 (68)
T ss_dssp SSCCCBCSSSCCBCEEE-T----------------------TTTEEEETTTTEEEEEETT
T ss_pred HhhheECCCCCCcCeEe-C----------------------CCCEEEcCCCCcEecCCCC
Confidence 45678999999877621 1 1255679999998888653
No 431
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=23.84 E-value=19 Score=25.36 Aligned_cols=46 Identities=15% Similarity=0.311 Sum_probs=29.5
Q ss_pred CCcceeccccccccccCCCCcEEe--c--CC-CcchhhhHhhcccCCCccCCCCCCC
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLL--H--CG-HTVCLACLLRLPIKDDTITCPFDRQ 114 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l--~--Cg-H~fC~~Cl~~~~~~~~~~~CP~Cr~ 114 (550)
.+...| +|.+... . .++. . |. .-|...|+.-.........||.|+.
T Consensus 9 ~e~~yC-~C~~~~~---g--~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQVSY---G--EMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTEECC---S--EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCCcEE-ECCCCCC---C--CeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 345677 9999865 4 4333 4 54 6788888864332345678999864
No 432
>2l81_A Enhancer of filamentation 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, cell adhesion; NMR {Homo sapiens}
Probab=23.61 E-value=1.9e+02 Score=24.95 Aligned_cols=6 Identities=0% Similarity=-0.247 Sum_probs=2.6
Q ss_pred cHHHHH
Q psy15732 266 LVEIEA 271 (550)
Q Consensus 266 ~l~~a~ 271 (550)
.++.|.
T Consensus 18 dld~A~ 23 (176)
T 2l81_A 18 DPDTAI 23 (176)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 344443
No 433
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=23.49 E-value=2.8e+02 Score=22.10 Aligned_cols=35 Identities=9% Similarity=0.244 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15732 274 LRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEG 308 (550)
Q Consensus 274 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 308 (550)
....+...+..++.++..+......+.-.+..+..
T Consensus 14 ~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~ 48 (119)
T 3ol1_A 14 LGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAE 48 (119)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666666655555555555555544
No 434
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=23.16 E-value=3.5e+02 Score=23.10 Aligned_cols=24 Identities=8% Similarity=0.253 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 321 DQARAKVHAYFNHLRESLLVQEAA 344 (550)
Q Consensus 321 ~~~~~~I~~~f~~l~~~L~~~e~~ 344 (550)
...+..+...+..|...|..+...
T Consensus 61 ~~~k~~Leke~~~LQa~L~qEr~~ 84 (168)
T 3o0z_A 61 ENSKSQTDKDYYQLQAILEAERRD 84 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666777777777666543
No 435
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.89 E-value=43 Score=23.47 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=25.1
Q ss_pred CcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
..+.|++|...|. . ...|. .| + ..-.....+.|+.|...+..
T Consensus 13 k~~~C~~C~k~f~---~--~~~L~-~H------~-~~h~~~~~~~C~~C~~~f~~ 54 (72)
T 1x6e_A 13 KPYGCVECGKAFS---R--SSILV-QH------Q-RVHTGEKPYKCLECGKAFSQ 54 (72)
T ss_dssp CCEECSSSCCEES---S--HHHHH-HH------H-HGGGCSCCEECSSSCCEESS
T ss_pred CCccCCCCCCccC---C--HHHHH-HH------H-HhcCCCCCeECCCCCcccCC
Confidence 4689999999998 5 32221 00 0 01112356889999887643
No 436
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=22.52 E-value=40 Score=23.04 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=25.8
Q ss_pred CcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCC
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~ 119 (550)
..+.|++|...|. . ...| ...-.....+.|+.|...+...
T Consensus 13 k~~~C~~C~k~F~---~--~~~l-----------~~~H~~~k~~~C~~C~k~f~~~ 52 (62)
T 1vd4_A 13 ASFKCPVCSSTFT---D--LEAN-----------QLFDPMTGTFRCTFCHTEVEED 52 (62)
T ss_dssp SEEECSSSCCEEE---H--HHHH-----------HHEETTTTEEBCSSSCCBCEEC
T ss_pred CCccCCCCCchhc---c--HHHh-----------HhhcCCCCCEECCCCCCccccC
Confidence 3578999988888 4 2222 1222234568899999888654
No 437
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=22.43 E-value=54 Score=26.38 Aligned_cols=47 Identities=15% Similarity=0.345 Sum_probs=37.1
Q ss_pred CcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
+-+.|..|...+.. . +....=|..+|..|..+... ..|+.|...+..
T Consensus 29 ~CF~C~~C~~~L~~--~--~f~~~~g~~yC~~cy~~~~~----~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAG--E--IYVMVNDKPVCKPCYVKNHA----VVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTT--S--EEEEETTEEEEHHHHHHHSC----CBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCc--C--EEEeECCEEechHHhCcCcC----ccCcccCCcCCc
Confidence 45899999999882 3 55567789999999988643 469999998764
No 438
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=22.35 E-value=48 Score=26.87 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=37.7
Q ss_pred CcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
+-+.|..|...+...+. +....=|..||..|..+... ....|..|...+..
T Consensus 28 ~CF~C~~C~~~L~~~~~--~~~~~~g~~yC~~~y~~~~~--~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGR--RLYYKLGRKLCRRDYLRLFG--QDGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTC--CEEEETTEEECHHHHHHHHC--CCEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCC--eEEEECCEEeecCchhhhCC--CccChhhcCCccCc
Confidence 56899999999862113 56667788999999988764 22369999988753
No 439
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.31 E-value=79 Score=19.44 Aligned_cols=13 Identities=23% Similarity=0.751 Sum_probs=10.9
Q ss_pred Ccceecccccccc
Q psy15732 64 LALECRVCEDIFL 76 (550)
Q Consensus 64 ~~l~C~iC~~~~~ 76 (550)
..+.|++|...|.
T Consensus 11 k~~~C~~C~k~F~ 23 (46)
T 2ytn_A 11 KPYKCNECGKVFT 23 (46)
T ss_dssp SSCBCTTTCCBCS
T ss_pred cCeECCCCCCeeC
Confidence 4578999999988
No 440
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=22.20 E-value=23 Score=34.00 Aligned_cols=46 Identities=17% Similarity=0.299 Sum_probs=31.9
Q ss_pred CCcceeccccccccccCCCCcEEe----cCC--CcchhhhHhhcccCCCccCCCCCCCc
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLL----HCG--HTVCLACLLRLPIKDDTITCPFDRQP 115 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l----~Cg--H~fC~~Cl~~~~~~~~~~~CP~Cr~~ 115 (550)
...-.||+|...-. - -++. .=| +-+|..|-..|-- ....||.|...
T Consensus 180 ~~~~~CPvCGs~P~---~--s~l~~~g~~~G~R~l~Cs~C~t~W~~--~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPM---A--GMIRQGGKETGLRYLSCSLCACEWHY--VRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEE---E--EEEEC----CCEEEEEETTTCCEEEC--CTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCc---e--eEEeecCCCCCcEEEEeCCCCCEEee--cCcCCcCCCCC
Confidence 45679999998776 2 2222 123 4568888888865 56789999876
No 441
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=22.04 E-value=23 Score=25.72 Aligned_cols=36 Identities=31% Similarity=0.433 Sum_probs=26.2
Q ss_pred cCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCCC
Q psy15732 62 LELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGY 120 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~ 120 (550)
+-+.|.||+|...+... . ..+...||.|+..+++.+
T Consensus 5 LL~iL~CP~ck~~L~~~-~----------------------~~~~LiC~~cg~~YPI~d 40 (70)
T 2js4_A 5 LLDILVCPVCKGRLEFQ-R----------------------AQAELVCNADRLAFPVRD 40 (70)
T ss_dssp CCCCCBCTTTCCBEEEE-T----------------------TTTEEEETTTTEEEEEET
T ss_pred HhhheECCCCCCcCEEe-C----------------------CCCEEEcCCCCceecCCC
Confidence 45678999999887721 1 125567999999988865
No 442
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=21.85 E-value=72 Score=19.60 Aligned_cols=13 Identities=23% Similarity=0.603 Sum_probs=10.7
Q ss_pred Ccceecccccccc
Q psy15732 64 LALECRVCEDIFL 76 (550)
Q Consensus 64 ~~l~C~iC~~~~~ 76 (550)
..+.|++|...|.
T Consensus 11 k~~~C~~C~k~f~ 23 (46)
T 2el4_A 11 KPYGCSQCAKTFS 23 (46)
T ss_dssp CSEECSSSSCEES
T ss_pred CceECCCCCchhC
Confidence 4578999999888
No 443
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.63 E-value=68 Score=19.80 Aligned_cols=13 Identities=38% Similarity=0.815 Sum_probs=10.8
Q ss_pred Ccceecccccccc
Q psy15732 64 LALECRVCEDIFL 76 (550)
Q Consensus 64 ~~l~C~iC~~~~~ 76 (550)
..+.|++|...|.
T Consensus 11 k~~~C~~C~k~f~ 23 (46)
T 2eml_A 11 KPYECSVCGKAFS 23 (46)
T ss_dssp CSEECSSSCCEES
T ss_pred CCeeCCCcCCccC
Confidence 4578999999988
No 444
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=21.63 E-value=4.6e+02 Score=23.80 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=13.8
Q ss_pred ccCCCCcccHHHHHHHHHHHHHHHHH
Q psy15732 258 RHKTHKHALVEIEAENLRSYVKNASS 283 (550)
Q Consensus 258 ~H~~H~~~~l~~a~~~~~~~l~~~l~ 283 (550)
+|..|...++...++.++..|.+.-.
T Consensus 6 ~~~~~~~~~~~~~f~~~~~~Ld~~~d 31 (240)
T 1j1j_A 6 HHHHHGSMSVSEIFVELQGFLAAEQD 31 (240)
T ss_dssp -------CCHHHHHHHHHHHHHHHHH
T ss_pred cccccCCccHHHHHHHHHHHHHHHHH
Confidence 45567778888888777777766543
No 445
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=21.43 E-value=2.3e+02 Score=26.02 Aligned_cols=83 Identities=10% Similarity=0.047 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHhhchhHHHHHHH
Q psy15732 325 AKVHAYFNHLRESLLVQEAAATSAVDMFVRERLGCLVQLHDDMGFWLQEVAKLYLKCEQMILQDDARVLTSGREIKEAIE 404 (550)
Q Consensus 325 ~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~e~~l~~~~~~~L~~~~~~~~~l~ 404 (550)
++++..+..++.++.-++..+- .++ +.....+.+..+++.+....+.++.-++.++....+...+++...+...++..
T Consensus 120 ~Rt~~iLSalINF~~FRE~~~~-~~~-e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~ 197 (250)
T 2ve7_C 120 KRTSRFLSGIINFIHFREACRE-TYM-EFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYH 197 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 3455555556666655544332 111 11222233333444444444444444444444444555666665555555555
Q ss_pred HHHhh
Q psy15732 405 TIEKY 409 (550)
Q Consensus 405 ~~~~~ 409 (550)
.+.+-
T Consensus 198 ~vt~i 202 (250)
T 2ve7_C 198 QVSKI 202 (250)
T ss_dssp HHHCC
T ss_pred HHhhc
Confidence 55543
No 446
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.40 E-value=70 Score=19.76 Aligned_cols=13 Identities=23% Similarity=0.529 Sum_probs=10.9
Q ss_pred Ccceecccccccc
Q psy15732 64 LALECRVCEDIFL 76 (550)
Q Consensus 64 ~~l~C~iC~~~~~ 76 (550)
..+.|++|...|.
T Consensus 11 ~~~~C~~C~k~f~ 23 (46)
T 2em5_A 11 KSHQCHECGRGFT 23 (46)
T ss_dssp CSEECSSSCCEES
T ss_pred CCeECCcCCCccC
Confidence 4578999999988
No 447
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=21.35 E-value=69 Score=26.63 Aligned_cols=32 Identities=25% Similarity=0.409 Sum_probs=24.9
Q ss_pred CCCCccccccccccccchhhhhHhhhhhcCCC
Q psy15732 170 KCDEDESHIAVLYCTVCASHLCEQCASDSHAT 201 (550)
Q Consensus 170 ~C~~~~~~~A~~~C~~C~~~lC~~C~~~h~~~ 201 (550)
.|..|.......-...=+.++|..|...|+..
T Consensus 38 ~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~L 69 (138)
T 2owa_A 38 TCFDCESRNPTWLSLSFAVFICLNCSSDHRKM 69 (138)
T ss_dssp BCTTTCCBSCCEEETTTTEEECHHHHHHHHTT
T ss_pred cCCCCcCCCCCeEEecCCEEEhHhhhHHHhCC
Confidence 37777666666666777889999999999875
No 448
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=21.20 E-value=55 Score=22.99 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=25.7
Q ss_pred CCcceeccccccccccCCCCcEEecCCCcchhhhHhhcc---cCCCccCCCCCCCcccC
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLP---IKDDTITCPFDRQPTPV 118 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~---~~~~~~~CP~Cr~~~~~ 118 (550)
...+.|++|...|. . ... +.... .....+.|+.|...+..
T Consensus 15 ~~~~~C~~C~k~f~---~--~~~-----------l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 15 DKPYKCDRCQASFR---Y--KGN-----------LASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CCSBCCTTSSCCBS---C--HHH-----------HHHHHHHHCCCCSEECTTTCCEESC
T ss_pred CCCeECCCCCceeC---C--HHH-----------HHHHHHHcCCCCCEECCCCCchhCC
Confidence 35689999999998 5 222 21111 12356789999887653
No 449
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=21.19 E-value=25 Score=27.15 Aligned_cols=12 Identities=25% Similarity=0.431 Sum_probs=10.6
Q ss_pred cchhhhHhhccc
Q psy15732 91 TVCLACLLRLPI 102 (550)
Q Consensus 91 ~fC~~Cl~~~~~ 102 (550)
.||+.||.+|..
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999975
No 450
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=21.14 E-value=26 Score=27.10 Aligned_cols=12 Identities=25% Similarity=0.711 Sum_probs=10.5
Q ss_pred cchhhhHhhccc
Q psy15732 91 TVCLACLLRLPI 102 (550)
Q Consensus 91 ~fC~~Cl~~~~~ 102 (550)
.||+.||.+|..
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999975
No 451
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.12 E-value=67 Score=19.83 Aligned_cols=13 Identities=15% Similarity=0.552 Sum_probs=11.1
Q ss_pred Ccceecccccccc
Q psy15732 64 LALECRVCEDIFL 76 (550)
Q Consensus 64 ~~l~C~iC~~~~~ 76 (550)
..+.|++|...|.
T Consensus 11 ~~~~C~~C~k~f~ 23 (46)
T 2ytg_A 11 KPFKCGECGKSYN 23 (46)
T ss_dssp CSEECTTTCCEES
T ss_pred CCeECCCCCcccC
Confidence 4589999999998
No 452
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.08 E-value=76 Score=19.49 Aligned_cols=13 Identities=23% Similarity=0.751 Sum_probs=11.0
Q ss_pred Ccceecccccccc
Q psy15732 64 LALECRVCEDIFL 76 (550)
Q Consensus 64 ~~l~C~iC~~~~~ 76 (550)
..+.|++|...|.
T Consensus 11 ~~~~C~~C~k~F~ 23 (46)
T 2eoe_A 11 KPYKCNECGKVFT 23 (46)
T ss_dssp CSSEETTTTEECS
T ss_pred CCeECCCcChhhC
Confidence 4588999999998
No 453
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=20.76 E-value=3.8e+02 Score=22.50 Aligned_cols=18 Identities=11% Similarity=0.379 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy15732 354 RERLGCLVQLHDDMGFWL 371 (550)
Q Consensus 354 ~~~~~~l~~~~~~l~~~~ 371 (550)
+.++..+...+..+...+
T Consensus 127 K~Kl~rv~~vkkeL~~hi 144 (152)
T 4fla_A 127 KQKLARVTQVRKELKSHI 144 (152)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333444444444444333
No 454
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=20.72 E-value=56 Score=25.04 Aligned_cols=47 Identities=13% Similarity=0.222 Sum_probs=35.8
Q ss_pred CcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccC
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPV 118 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~ 118 (550)
+=+.|..|...+.. . +....=|..||..|..+... ..|..|...+..
T Consensus 32 ~CF~C~~C~~~L~~--~--~~~~~~g~~yC~~cy~~~~~----~~C~~C~~~I~~ 78 (101)
T 2cup_A 32 TCFRCAKCLHPLAN--E--TFVAKDNKILCNKCTTREDS----PKCKGCFKAIVA 78 (101)
T ss_dssp TTCCCSSSCCCTTS--S--CCEEETTEEECHHHHTTCCC----CBCSSSCCBCCS
T ss_pred cCCcccccCCCCCc--C--eeECcCCEEEChhHhhhhcC----CccccCCCcccc
Confidence 45889999999872 2 45556788999999977643 569999988764
No 455
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=20.70 E-value=2.8e+02 Score=22.31 Aligned_cols=35 Identities=11% Similarity=0.268 Sum_probs=14.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 266 LVEIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVS 304 (550)
Q Consensus 266 ~l~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 304 (550)
++++|.+.+ .+.+..+...++.+++.+..++..+.
T Consensus 85 ~~~eA~~~l----~~r~~~l~~~~~~l~~~l~~l~~~i~ 119 (133)
T 1fxk_C 85 NFEDAMESI----KSQKNELESTLQKMGENLRAITDIMM 119 (133)
T ss_dssp EHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445554333 33333333444444444443333333
No 456
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=20.50 E-value=51 Score=21.89 Aligned_cols=37 Identities=19% Similarity=0.368 Sum_probs=22.7
Q ss_pred ceeccccccccccCCCCcEEecCCCcchhhhHhhcc---cCCCccCCCCCCCcccC
Q psy15732 66 LECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLP---IKDDTITCPFDRQPTPV 118 (550)
Q Consensus 66 l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~---~~~~~~~CP~Cr~~~~~ 118 (550)
+.|++|...|. . ... +.... .....+.|+.|...+..
T Consensus 3 ~~C~~C~~~f~---~--~~~-----------l~~H~~~h~~~~~~~C~~C~~~f~~ 42 (60)
T 2adr_A 3 FVCEVCTRAFA---R--QEH-----------LKRHYRSHTNEKPYPCGLCNRAFTR 42 (60)
T ss_dssp BCCTTTCCCBS---C--HHH-----------HHHHHHTTTSSCSEECTTTCCEESS
T ss_pred CcCCCCccccC---C--HHH-----------HHHHHHHhCCCCCccCCCCCCccCC
Confidence 67888988888 5 222 21111 12346789999887653
No 457
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=20.47 E-value=75 Score=23.84 Aligned_cols=47 Identities=21% Similarity=0.387 Sum_probs=31.3
Q ss_pred CCcceeccccccccccCCCCcEEe---cCCCcchhhhHhhccc--------------CCCccCCCCCCCc
Q psy15732 63 ELALECRVCEDIFLTQGDKVPRLL---HCGHTVCLACLLRLPI--------------KDDTITCPFDRQP 115 (550)
Q Consensus 63 ~~~l~C~iC~~~~~~~~~~~P~~l---~CgH~fC~~Cl~~~~~--------------~~~~~~CP~Cr~~ 115 (550)
..+-.|.||...-. + ..+ -|+-.|...|+.+.-. ....-.||.|..-
T Consensus 13 ~~D~~C~VC~~~t~---~---~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL 76 (89)
T 1wil_A 13 VNDEMCDVCEVWTA---E---SLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNI 76 (89)
T ss_dssp CCSCCCTTTCCCCS---S---CCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCC
T ss_pred CCCcccCccccccc---c---ceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchh
Confidence 45678999986554 2 233 5888999999988511 1245589999543
No 458
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.46 E-value=77 Score=19.49 Aligned_cols=13 Identities=15% Similarity=0.473 Sum_probs=11.0
Q ss_pred Ccceecccccccc
Q psy15732 64 LALECRVCEDIFL 76 (550)
Q Consensus 64 ~~l~C~iC~~~~~ 76 (550)
..+.|++|...|.
T Consensus 11 k~~~C~~C~k~f~ 23 (46)
T 2ysp_A 11 KPYKCEKCGKGYN 23 (46)
T ss_dssp CSEEETTTTEEES
T ss_pred CCeECCCCCCccC
Confidence 4588999999998
No 459
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=20.45 E-value=20 Score=27.32 Aligned_cols=52 Identities=15% Similarity=0.301 Sum_probs=35.5
Q ss_pred CcceeccccccccccCCCCcEEe--cCCCcchhhhHhhccc------CCCccCCCCCCCccc
Q psy15732 64 LALECRVCEDIFLTQGDKVPRLL--HCGHTVCLACLLRLPI------KDDTITCPFDRQPTP 117 (550)
Q Consensus 64 ~~l~C~iC~~~~~~~~~~~P~~l--~CgH~fC~~Cl~~~~~------~~~~~~CP~Cr~~~~ 117 (550)
....|.+|...-...++ .+++ .|...|...|+...+. ..+...||.|.....
T Consensus 15 ~~~~C~vC~~~~~~~~~--~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGN--QLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTC--CEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCC--ceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 46789999987542113 5555 8999999999976543 235667999865543
No 460
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=20.41 E-value=5.5e+02 Score=24.28 Aligned_cols=11 Identities=9% Similarity=0.296 Sum_probs=5.1
Q ss_pred HHHHHHHHHHh
Q psy15732 398 EIKEAIETIEK 408 (550)
Q Consensus 398 ~~~~~l~~~~~ 408 (550)
.+...++.++.
T Consensus 177 kl~~~veelr~ 187 (307)
T 2l7b_A 177 GAERGLSAIRE 187 (307)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444454444
No 461
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.30 E-value=80 Score=19.41 Aligned_cols=13 Identities=23% Similarity=0.626 Sum_probs=11.0
Q ss_pred Ccceecccccccc
Q psy15732 64 LALECRVCEDIFL 76 (550)
Q Consensus 64 ~~l~C~iC~~~~~ 76 (550)
..+.|++|...|.
T Consensus 11 k~~~C~~C~k~f~ 23 (46)
T 2epz_A 11 KPFDCIDCGKAFS 23 (46)
T ss_dssp CSBCCTTTCCCBS
T ss_pred CCeECCCCCceeC
Confidence 4578999999998
No 462
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=20.29 E-value=2.3e+02 Score=19.75 Aligned_cols=39 Identities=8% Similarity=0.189 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15732 270 EAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSKIEG 308 (550)
Q Consensus 270 a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 308 (550)
|+...+..=...+..|....+.++.....+...+..+..
T Consensus 13 AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 13 AAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555555555555544444444444433
No 463
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=20.27 E-value=97 Score=30.77 Aligned_cols=59 Identities=12% Similarity=-0.019 Sum_probs=37.2
Q ss_pred cCCCeEEEEecCCCC--C--CCCCHHHHHHhcCCCcccCCCcEEEEEecccC---------------------CCCHHHH
Q psy15732 479 LKDAALLLLANKQDI--P--GCETVESITEAFDLYKLCCGRSWHIQACNAQS---------------------GEGLHEG 533 (550)
Q Consensus 479 ~~~~pili~~NK~Dl--~--~~~~~~~i~~~~~l~~~~~~~~~~~~~~SA~~---------------------g~gi~e~ 533 (550)
....|+++++||.|. . ...-...+.+++.-+ +.+..++++||+. +.|++.+
T Consensus 222 lt~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~----~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~ 297 (392)
T 1ni3_A 222 LTAKPVIYLVNMSERDFLRQKNKYLPKIKKWIDEN----SPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKI 297 (392)
T ss_dssp GGGSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTT----STTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHH
T ss_pred hccCceEEEEEecchhhcccchHHHHHHHHHHHhc----CCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHH
Confidence 345799999999883 1 122355566554411 1124678899886 6888888
Q ss_pred HHHHHHHH
Q psy15732 534 LDWLSRQL 541 (550)
Q Consensus 534 f~~l~~~~ 541 (550)
+....+.+
T Consensus 298 i~~~~~~L 305 (392)
T 1ni3_A 298 IVTGYNAL 305 (392)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 77765443
No 464
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.23 E-value=80 Score=19.37 Aligned_cols=13 Identities=38% Similarity=0.731 Sum_probs=10.8
Q ss_pred Ccceecccccccc
Q psy15732 64 LALECRVCEDIFL 76 (550)
Q Consensus 64 ~~l~C~iC~~~~~ 76 (550)
..+.|++|...|.
T Consensus 11 ~~~~C~~C~k~f~ 23 (46)
T 2eop_A 11 KPHECRECGKSFS 23 (46)
T ss_dssp CSCBCTTTCCBCS
T ss_pred CCeeCCCCCchhC
Confidence 4578999999988
No 465
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.16 E-value=87 Score=19.25 Aligned_cols=13 Identities=23% Similarity=0.664 Sum_probs=10.9
Q ss_pred Ccceecccccccc
Q psy15732 64 LALECRVCEDIFL 76 (550)
Q Consensus 64 ~~l~C~iC~~~~~ 76 (550)
..+.|++|...|.
T Consensus 11 k~~~C~~C~k~f~ 23 (46)
T 2em7_A 11 KPYKCEECGKGFI 23 (46)
T ss_dssp CSEECSSSCCEES
T ss_pred cCccCCCccchhC
Confidence 4578999999988
No 466
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=20.09 E-value=20 Score=25.83 Aligned_cols=37 Identities=22% Similarity=0.447 Sum_probs=26.0
Q ss_pred cCCcceeccccccccccCCCCcEEecCCCcchhhhHhhcccCCCccCCCCCCCcccCCCC
Q psy15732 62 LELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYS 121 (550)
Q Consensus 62 ~~~~l~C~iC~~~~~~~~~~~P~~l~CgH~fC~~Cl~~~~~~~~~~~CP~Cr~~~~~~~~ 121 (550)
+-+.|.||+|...+... . ..+...||.|+..+++.+|
T Consensus 5 LL~iL~CP~ck~~L~~~-~----------------------~~~~LiC~~cg~~YPI~dG 41 (68)
T 2hf1_A 5 FLEILVCPLCKGPLVFD-K----------------------SKDELICKGDRLAFPIKDG 41 (68)
T ss_dssp CEEECBCTTTCCBCEEE-T----------------------TTTEEEETTTTEEEEEETT
T ss_pred HhhheECCCCCCcCeEe-C----------------------CCCEEEcCCCCcEecCCCC
Confidence 34678999999877621 1 1255679999999888753
No 467
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.07 E-value=87 Score=19.24 Aligned_cols=13 Identities=23% Similarity=0.664 Sum_probs=10.9
Q ss_pred Ccceecccccccc
Q psy15732 64 LALECRVCEDIFL 76 (550)
Q Consensus 64 ~~l~C~iC~~~~~ 76 (550)
..+.|++|...|.
T Consensus 11 ~~~~C~~C~k~f~ 23 (46)
T 2en1_A 11 KPFKCEECGKRFT 23 (46)
T ss_dssp CSEEETTTTEEES
T ss_pred CCeeCCCCCcccC
Confidence 4588999999998
No 468
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.02 E-value=74 Score=19.57 Aligned_cols=13 Identities=23% Similarity=0.588 Sum_probs=10.9
Q ss_pred Ccceecccccccc
Q psy15732 64 LALECRVCEDIFL 76 (550)
Q Consensus 64 ~~l~C~iC~~~~~ 76 (550)
..+.|++|...|.
T Consensus 11 ~~~~C~~C~k~f~ 23 (46)
T 2eov_A 11 KPYKCSDCGKSFT 23 (46)
T ss_dssp CSCBCSSSCCBCS
T ss_pred CCccCCccChhhC
Confidence 4578999999998
No 469
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=20.01 E-value=2.7e+02 Score=20.52 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15732 268 EIEAENLRSYVKNASSNVQHLIEEITESVNTVDLVVSK 305 (550)
Q Consensus 268 ~~a~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~ 305 (550)
+.+.+.+|..+++.+...+..++.+....+.+..-...
T Consensus 6 SAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~K 43 (78)
T 3iv1_A 6 SAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQK 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHH
Confidence 34445566666666666555555555444444443333
Done!