RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15732
(550 letters)
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 129 bits (328), Expect = 2e-35
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGR 515
D+AD+E++ + EL L+ + +L+ +L+L NK+D+PG + + E +L + R
Sbjct: 99 DAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAI-QDR 157
Query: 516 SWHIQACNAQSGEGLHEGLDWLSRQL 541
+ + + + + L WL +
Sbjct: 158 EICCYSISCKEKDNIDITLQWLIQHS 183
Score = 28.3 bits (64), Expect = 5.2
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 440 GPKMEMRVVTLGLDSA 455
G K EM + +GL +
Sbjct: 18 GSKEEMELTLVGLQYS 33
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 128 bits (323), Expect = 1e-34
Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKL---- 511
D+AD ER EA EL L ELKD ++L NK D P + + A L
Sbjct: 99 DAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQ 158
Query: 512 --CCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541
R + C+ G E WLS+ +
Sbjct: 159 RIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190
Score = 27.5 bits (62), Expect = 9.7
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 441 PKMEMRVVTLGLDSA 455
+++ LGLD+A
Sbjct: 20 WNKHGKLLFLGLDNA 34
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 125 bits (315), Expect = 2e-33
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCG- 514
D AD ERL E+ EL L+ ++ + + +L+L NK D P + E + E F LY G
Sbjct: 101 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGK 160
Query: 515 ----------RSWHIQACNAQSGEGLHEGLDWLSRQL 541
R + C+ +G EG W+++ +
Sbjct: 161 GSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197
Score = 27.2 bits (61), Expect = 9.8
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 442 KMEMRVVTLGLDSA 455
K ++V LGLD+A
Sbjct: 23 KKTGKLVFLGLDNA 36
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 124 bits (313), Expect = 3e-33
Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGR 515
DS D++R+ A EL L+ E EL+ + LL+ ANKQD+P + I E + + R
Sbjct: 98 DSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSI-MNR 156
Query: 516 SWHIQACNAQSGEGLHEGLDWLSRQLIAAGVN 547
+W I ++++G+GL EG+DWL +L G+
Sbjct: 157 TWTIVKSSSKTGDGLVEGMDWLVERLREQGLG 188
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 123 bits (310), Expect = 6e-33
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGR 515
DS D++R+ + +EL ++ E+EL+ A L++ ANKQD+ T + + L L R
Sbjct: 83 DSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPAL-KDR 141
Query: 516 SWHIQACNAQSGEGLHEGLDWLSRQL 541
W I +A G GL E ++WL L
Sbjct: 142 KWQIFKTSATKGTGLDEAMEWLVETL 167
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 122 bits (308), Expect = 1e-32
Identities = 32/86 (37%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGR 515
DSAD++R E ELT+L+ E++L +L+ ANKQD+ I E +L+ + R
Sbjct: 92 DSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTI-RDR 150
Query: 516 SWHIQACNAQSGEGLHEGLDWLSRQL 541
W IQ+C+A +GEG+ +G++W+ + +
Sbjct: 151 VWQIQSCSALTGEGVQDGMNWVCKNV 176
Score = 28.3 bits (64), Expect = 4.5
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 441 PKMEMRVVTLGLDSA 455
P E+R++ LGLD+A
Sbjct: 13 PDQEVRILLLGLDNA 27
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 122 bits (308), Expect = 1e-32
Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGR 515
DSAD++R+ + EL L+ E+ L A LL+ ANKQD+PG + +I EA +L +
Sbjct: 94 DSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSI-RSH 152
Query: 516 SWHIQACNAQSGEGLHEGLDWLSRQL 541
W IQ C+A +GE L G+DWL +
Sbjct: 153 HWRIQGCSAVTGEDLLPGIDWLLDDI 178
Score = 28.4 bits (64), Expect = 4.9
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 440 GPKMEMRVVTLGLDSA 455
+ E+R++ LGLD+A
Sbjct: 14 QKERELRLLMLGLDNA 29
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 121 bits (306), Expect = 1e-32
Identities = 46/86 (53%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Query: 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGR 515
DS D+ER+ EA EL +++AE EL+DA LL+ ANKQD+P IT+ L+ L R
Sbjct: 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RHR 134
Query: 516 SWHIQACNAQSGEGLHEGLDWLSRQL 541
+W+IQA A SG+GL+EGLDWLS QL
Sbjct: 135 NWYIQATCATSGDGLYEGLDWLSNQL 160
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 121 bits (307), Expect = 1e-32
Identities = 38/86 (44%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGR 515
DS D+ER+ EL K++A ++L+ A LL+ ANKQD+ C TV I++ L +
Sbjct: 97 DSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSI-KDH 155
Query: 516 SWHIQACNAQSGEGLHEGLDWLSRQL 541
WHIQAC A +GEGL +GL+W+ +L
Sbjct: 156 QWHIQACCALTGEGLCQGLEWMMSRL 181
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 121 bits (307), Expect = 2e-32
Identities = 38/86 (44%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGR 515
DS D+ER+ EL K++A ++L+ A LL+ ANKQD+ C TV I++ L +
Sbjct: 92 DSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSI-KDH 150
Query: 516 SWHIQACNAQSGEGLHEGLDWLSRQL 541
WHIQAC A +GEGL +GL+W+ +L
Sbjct: 151 QWHIQACCALTGEGLCQGLEWMMSRL 176
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 121 bits (306), Expect = 3e-32
Identities = 41/86 (47%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGR 515
DS D+ER+ E+ EL K++ E EL+DA LL+ ANKQD+P V +T+ L L R
Sbjct: 105 DSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHL-RSR 163
Query: 516 SWHIQACNAQSGEGLHEGLDWLSRQL 541
+W++QA A G GL++GLDWLS +L
Sbjct: 164 TWYVQATCATQGTGLYDGLDWLSHEL 189
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 120 bits (302), Expect = 7e-32
Identities = 40/86 (46%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGR 515
DS DK+R+ A EL ++ E+EL+DAALL+ ANKQD PG + +++ +L +L R
Sbjct: 94 DSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVEL-KDR 152
Query: 516 SWHIQACNAQSGEGLHEGLDWLSRQL 541
SW I A +A GEG+ EGLDWL +
Sbjct: 153 SWSIVASSAIKGEGITEGLDWLIDVI 178
Score = 29.1 bits (66), Expect = 2.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 440 GPKMEMRVVTLGLDSA 455
G E+R++ LGLD A
Sbjct: 14 GSNKELRILILGLDGA 29
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 123 bits (310), Expect = 2e-31
Identities = 46/86 (53%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Query: 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGR 515
DS D+ER+ EA EL +++AE EL+DA LL+ ANKQD+P IT+ L+ L R
Sbjct: 241 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RHR 299
Query: 516 SWHIQACNAQSGEGLHEGLDWLSRQL 541
+W+IQA A SG+GL+EGLDWLS QL
Sbjct: 300 NWYIQATCATSGDGLYEGLDWLSNQL 325
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 117 bits (295), Expect = 1e-30
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 456 DSADKERLPEALAELTKLIAEKELK--DAALLLLANKQDIPGCETVESITEAFDLYKLCC 513
DS+D+ R+ A EL L+ ++K +L ANK D+ T +++ L +
Sbjct: 99 DSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIK- 157
Query: 514 GRSWHIQACNAQSGEGLHEGLDWLSRQL 541
+ WHI A +A GEGL EG+DWL Q+
Sbjct: 158 DKPWHICASDAIKGEGLQEGVDWLQDQI 185
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 121 bits (305), Expect = 9e-30
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGR 515
D AD++R+ EA EL ++I ++E++DA +L+ ANKQD+P I E L ++ R
Sbjct: 398 DCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRI-RDR 456
Query: 516 SWHIQACNAQSGEGLHEGLDWLSRQL 541
+W++Q A SG+GL+EGL WL+
Sbjct: 457 NWYVQPSCATSGDGLYEGLTWLTSNY 482
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 88.6 bits (220), Expect = 1e-21
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 66 LECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKD-DTITCPFDRQPTPVGYSGVW 124
LEC +C + F T+ P+LLHCGHT+C CL +L + + CPF + T + + +
Sbjct: 16 LECPICMESF-TEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI--TSLT 72
Query: 125 GLKKNFALLELIEK 138
L N +L+
Sbjct: 73 QLTDNLTVLKSGPS 86
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 91.7 bits (228), Expect = 2e-21
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 455 ADSADKERLPEALAELTKLIAE-----KELKDAALLLLANKQDIPGCETVESITEAFDLY 509
ADSA RL + + L D +++ NK+D+P VE + D
Sbjct: 105 ADSAP-NRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP- 162
Query: 510 KLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIA 543
+ + A G+G+ E L +SR ++A
Sbjct: 163 ----EGKFPVLEAVATEGKGVFETLKEVSRLVLA 192
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain,
acetylation, ADP- ribosylation, alternative splicing,
cell cycle, cell division; 2.40A {Homo sapiens}
Length = 227
Score = 91.3 bits (226), Expect = 4e-21
Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 6/91 (6%)
Query: 455 ADSADKERL--PEALAELTKLI--AEKELKDAALLLLANKQDIPGCETVESITEAFDLYK 510
A++ +R + + + + A L+L Q + L
Sbjct: 133 ANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNL 192
Query: 511 LCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541
L W +Q A++ G G++W+ ++
Sbjct: 193 L--NHPWLVQDTEAETLTGFLNGIEWILEEV 221
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation
pathway, ubiquitin Pro ligase, protein binding-cell
cycle complex; 2.80A {Homo sapiens}
Length = 312
Score = 83.2 bits (205), Expect = 1e-17
Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 6/91 (6%)
Query: 455 ADSADKERL--PEALAELTKLI--AEKELKDAALLLLANKQDIPGCETVESITEAFDLYK 510
A++ +R + + + + A L+L Q + L
Sbjct: 218 ANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNL 277
Query: 511 LCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541
L W +Q A++ G G++W+ ++
Sbjct: 278 L--NHPWLVQDTEAETLTGFLNGIEWILEEV 306
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 75.2 bits (185), Expect = 1e-15
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 456 DSADKERLPEALAE-LTKLIAEKEL--KDAALLLLANKQDIPGCETVESITEAFDLYKLC 512
DSA +R + +AE L +++ + +LL+ NKQDI ++ + I + + +L
Sbjct: 87 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEK-ELN 145
Query: 513 CGRSWHIQACNAQSGEGLHEGLDWLSRQ 540
R A + L ++
Sbjct: 146 TLRVTRSAAPSTLDSSS--TAPAQLGKK 171
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled
coil, cytoplasm, cytoskeleton, disease mutation, ligase,
metal-binding; NMR {Homo sapiens}
Length = 101
Score = 68.8 bits (168), Expect = 1e-14
Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 17/112 (15%)
Query: 159 IKCDFSLQLHIKCDEDESHIAVLYCTVCASHLCEQCASDSH-ATRTLQKHRRI-PLSEKP 216
+ C F CD+D + AV C C C++C +H + HR I P+ +
Sbjct: 4 VLCQF-------CDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSH 56
Query: 217 REKPFCSSHPTNIAEFICLEEHCQTSAQYPPLMCFICKDYGRHKTHKHALVE 268
C H C+ + L+C +CK GRH+ H+ A +
Sbjct: 57 IRGLMCLEHEDEKVNMYCVTDDQ--------LICALCKLVGRHRDHQVAALS 100
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 65.6 bits (160), Expect = 2e-12
Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 9/94 (9%)
Query: 452 LDSADSADKERLPEALAELTKLIAEKELKDAA---LLLLANKQDIPGCETVESITEAF-- 506
+DS D ++L L +++ E +L+ NK ++ I +A
Sbjct: 90 VDSTV--DPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALES 147
Query: 507 DLYKLCCGRSWHIQACNAQSGE--GLHEGLDWLS 538
++ K+ R + + E LD L
Sbjct: 148 EIQKVIERRKKSLNEVERKINEEDYAENTLDVLQ 181
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.5 bits (154), Expect = 1e-10
Identities = 75/434 (17%), Positives = 127/434 (29%), Gaps = 141/434 (32%)
Query: 5 PACGDTIGARLSVLDTTRSSVLDTTRY--------------SELPGTRYYPVLDTTRYSV 50
GD I L + LD + S P Y L + S
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY---LLSIPISC 238
Query: 51 LLGTRTTRILILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLR----------- 99
L I +++LA + + T G+ L G T L+
Sbjct: 239 PL------IGVIQLAHYVVTAKLLGFTPGELRSYL--KGATGHSQGLVTAVAIAETDSWE 290
Query: 100 --LPIKDDTITCPFDRQPTPVGYSGVW-GLK--KNFALLELIEKIQTNDEKATESIPLFS 154
IT F + G++ + + L I + + E +P S
Sbjct: 291 SFFVSVRKAITVLF------------FIGVRCYEAYPNTSLPPSILEDSLENNEGVP--S 336
Query: 155 AELHIKCDFS---LQLHI-KCDE---DESHIAV-LYCT----VCASH------LCEQCAS 196
L I + + +Q ++ K + + + L V + L
Sbjct: 337 PMLSIS-NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 197 DSHATRTLQKHRRIPLSEKPREKPFCSSH--PTNIAEFICLEEHCQTSAQYPPLMC---- 250
+ Q RIP SE+ K S+ P + F H L+
Sbjct: 396 AKAPSGLDQ--SRIPFSER---KLKFSNRFLPVA-SPF-----HS-------HLLVPASD 437
Query: 251 FICKDYGRHKTHKHALVEIEAENLRSYVKNAS--SNVQHLIEEITESVNTVDLVVSKI-- 306
I KD ++ V A++++ V + S+++ L I+E + VD ++
Sbjct: 438 LINKDLVKNN------VSFNAKDIQIPVYDTFDGSDLRVLSGSISERI--VDCIIRLPVK 489
Query: 307 -EGNT----------GPSGTEPGTGDQARAKVHAYFNHLRESLLVQEAAATSAVDMFVRE 355
E T GP G G G + ++ V+ A +D
Sbjct: 490 WETTTQFKATHILDFGPGGA-SGLGV--------LTHRNKDGTGVRVIVA-GTLD----- 534
Query: 356 RLGCLVQLHDDMGF 369
+ DD GF
Sbjct: 535 -----INPDDDYGF 543
Score = 44.7 bits (105), Expect = 9e-05
Identities = 42/276 (15%), Positives = 76/276 (27%), Gaps = 80/276 (28%)
Query: 197 DSHATRTLQ-KH----RRIPLSEKP-------REKPFCSSHPTNIAEFICLEEHCQTS-- 242
D+++TR L H + + +E+ F P F +E T+
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQ-FNKILPEPTEGFAADDE--PTTPA 58
Query: 243 ---AQYPPLMCFICKDYGRHKTH------KHALVEIEAENLRSYVKNASSNVQHLIEEIT 293
++ + ++ K L E E L + + L++E
Sbjct: 59 ELVGKF---LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG--NDIHALAAKLLQEND 113
Query: 294 ESVNTVDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHLRESLLVQEAAATSA----- 348
++ ++ AR F+ S L + +A
Sbjct: 114 TTLVKTKELIK--------------NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Query: 349 ------VDMFVRERLGCLVQLHDD----MGFWLQEVAKLYLKCEQMILQDDARVLTSGRE 398
D + E L L+ +G ++ A+ L D +V T G
Sbjct: 160 FGGQGNTDDYFEE----LRDLYQTYHVLVGDLIKFSAET-LSELIRTTLDAEKVFTQGLN 214
Query: 399 IKEAIETIEKYDTLFNELTPEQIHPDP---CIPITF 431
I E +E P IPI+
Sbjct: 215 ILEWLE------------NPSNTPDKDYLLSIPISC 238
Score = 40.0 bits (93), Expect = 0.002
Identities = 52/340 (15%), Positives = 95/340 (27%), Gaps = 128/340 (37%)
Query: 181 LYCT-VCASHLCEQCASDSHATRTLQKHRRIPLSEKPREKPFCSSHPTNIAEFICLEEHC 239
LY T A + + D+H T + + P N+ E+
Sbjct: 1635 LYKTSKAAQDVWNRA--DNHFKDTY----GFSILDIVINNP------VNLTIHFGGEKGK 1682
Query: 240 QTSAQYPPLMCFICKDYGRHKTHKHALVEIEAENLRSYVKNASSNVQHLIEEITESVNT- 298
+ Y ++ D G+ KT K + + E+ SY + + T+ T
Sbjct: 1683 RIRENYSAMIFETIVD-GKLKTEK--IFKEINEHSTSYTFRSEKGLLSA----TQ--FTQ 1733
Query: 299 --VDLVVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHLRE-------------SL----- 338
+ ++ K A F L+ SL
Sbjct: 1734 PAL-TLMEK-----------------------AAFEDLKSKGLIPADATFAGHSLGEYAA 1769
Query: 339 LVQEAAATS---AVDMFVRERLGCLVQL---HDDMGFWLQEVAKLYLKCEQMILQDDARV 392
L A S V++ V R G +Q+ D++G Y MI + RV
Sbjct: 1770 LASLADVMSIESLVEV-VFYR-GMTMQVAVPRDELG------RSNY----GMIAINPGRV 1817
Query: 393 LTSGRE--IKEAIETIEKYDTL------FNELTPEQIHPDPCIPITFTKDNRVHIGPKME 444
S + ++ +E + K +N + +Q
Sbjct: 1818 AASFSQEALQYVVERVGKRTGWLVEIVNYN-VENQQY----------------------- 1853
Query: 445 MRVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAAL 484
V + D L + + + I +++ L
Sbjct: 1854 --VA--------AGDLRAL-DTVTNVLNFIKLQKIDIIEL 1882
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 52.0 bits (125), Expect = 3e-09
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Query: 66 LECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGV 123
L C+ C+ K P+LL C HT+C CL ++ CP + P P+G
Sbjct: 7 LRCQQCQAEA-----KCPKLLPCLHTLCSGCLEASGMQ-----CPICQAPWPLGADTP 54
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 54.4 bits (131), Expect = 1e-08
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 452 LDSADSADKERLPEALAELTKLIAEKELKDAA---LLLLANKQDIPGCETVESITEAFD- 507
+DS D ++L L +++ E +L+ NK ++ I +A +
Sbjct: 126 VDSTV--DPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALES 183
Query: 508 -LYKLCCGR 515
+ K+ R
Sbjct: 184 EIQKVIERR 192
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 48.8 bits (116), Expect = 2e-07
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 62 LELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYS 121
+E +C C+++ P C H VC CL R + +CP R Y+
Sbjct: 49 VEETFQCICCQELV-----FRPITTVCQHNVCKDCLDRS-FRAQVFSCPACRYDLGRSYA 102
Query: 122 GVWGLKKNFALLELIEKI 139
++ N L ++ ++
Sbjct: 103 ----MQVNQPLQTVLNQL 116
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.4 bits (122), Expect = 7e-07
Identities = 49/375 (13%), Positives = 97/375 (25%), Gaps = 114/375 (30%)
Query: 263 KHALVEIEAENLRSY--VKNASSNV-------QHLIEEITESVNTVDLVVSKIEGNTGPS 313
K + + SY + + E + E + + + +
Sbjct: 163 KTWVA---LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP-NWTSRSD 218
Query: 314 GTE--PGTGDQARAKVHAYFNH--LRESLL----VQEAAATSAVDMFVRERLGC--LV-- 361
+ +A++ LL VQ A A +A + L C L+
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN------LSCKILLTT 272
Query: 362 ------------------QLHDDMGFWLQEVAKLYLKCEQMILQDDARVLTS-------- 395
H M EV L LK QD R + +
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 396 -GREIKEAIETIEKYDTL------------FNELTPEQIHP---DPCIPITFTKDNRVHI 439
I++ + T + + + N L P + + F HI
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV---FPPS--AHI 387
Query: 440 GPKMEMRVVTLGL--DSADSADKERLPEALAEL-TKLIAEKELKDAAL----LLLANKQD 492
L L +D + + +L + EK+ K++ + + L K
Sbjct: 388 PTI------LLSLIWFDVIKSDVMVV---VNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 493 IPGCETV-ESITEAFDLYKLCCGRS-----------WHI-----QACNAQSGEGLHE--- 532
+ + SI + +++ K HI + +
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 533 GLDWLSRQLIAAGVN 547
+L +++
Sbjct: 499 DFRFLEQKIRHDSTA 513
Score = 39.5 bits (91), Expect = 0.003
Identities = 60/368 (16%), Positives = 105/368 (28%), Gaps = 122/368 (33%)
Query: 15 LSVLDTTRSS-----------VLDTTRYSEL-----PGTRYYPVLD------TTRYSVLL 52
L VL +++ +L TTR+ ++ T + LD T L
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 53 GTRTTRILILELALE-CRV-----------CEDIFLT-------QGDKVPRLLHCGHTVC 93
+ +L E D T DK+ ++
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII----ESS 362
Query: 94 LACL----LR-----LPI--KDDTITCPFDRQPTPVGYSGVWGLKKNFALLELIEK---- 138
L L R L + I PT + S +W ++ ++ K
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHI-------PTIL-LSLIWFDVIKSDVMVVVNKLHKY 414
Query: 139 --IQTNDEKATESIPLFSAELHIKCDFSLQLHIK-----------CDEDE---------- 175
++ +++T SIP EL +K + LH +D
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 176 SHIAVLYCTVCASHL--CEQCASDSHATRTL-------QKHRRIPLSEKPREKPFCSSHP 226
SHI + HL E + QK R + S
Sbjct: 475 SHIG--H------HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS-----GSIL 521
Query: 227 TNIAEFICLEEH-CQTSAQYPPLMCFICKDYGRHKTH----KHA-LVEI--EAENLRSYV 278
+ + + + C +Y L+ I + + + K+ L+ I AE+ +
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED-EAIF 580
Query: 279 KNASSNVQ 286
+ A VQ
Sbjct: 581 EEAHKQVQ 588
Score = 37.5 bits (86), Expect = 0.012
Identities = 43/305 (14%), Positives = 96/305 (31%), Gaps = 94/305 (30%)
Query: 255 DYGRHKTHKHALVEIEAENLRSYVKNASSNVQHLIEEITESVNT---VDLVVSKIEGNTG 311
+ G H+ ++ + ++V N + + ++++ +S+ + +D ++
Sbjct: 10 ETGEHQYQYKDILSV---FEDAFVDNF--DCKD-VQDMPKSILSKEEIDHIIM------- 56
Query: 312 PSGTEPGTGDQARAKVHAYFNHLRESLLVQEAAATSAVDMFVRERLGCLVQLHDDMGFWL 371
L +LL ++ V FV E L + +L
Sbjct: 57 ----SKDAVSGTL--------RLFWTLLSKQ---EEMVQKFVEE------VLRINYK-FL 94
Query: 372 QEVAKLYLKCEQMILQDDARVLTSGREIKEAIETIEKYDTLFNELTPEQIHPDPCIPITF 431
+ + Q S IE+ D L+N+ F
Sbjct: 95 MS--PIKTEQRQ----------PSMMTR----MYIEQRDRLYNDNQV------------F 126
Query: 432 TKDNRVHIGPKMEMRVVTLGLDSADS--------ADKERLPEALAELTKLIAEKELKDAA 483
K N + P +++R L L A + + K T + +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK----------TWVALDV-CLSYK 175
Query: 484 LLLLANKQ----DIPGCETVESITEAFDLYKLC--CGRSWHIQACNAQSGE-GLHEGLDW 536
+ + + ++ C + E++ E L KL +W ++ ++ + + +H
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEM--LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 537 LSRQL 541
L R L
Sbjct: 234 LRRLL 238
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 45.3 bits (107), Expect = 3e-06
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
Query: 66 LECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG--YSGV 123
+C +C +I P L C HT+C C ++ ++ CPF R+ Y
Sbjct: 16 CQCGICMEIL-----VEPVTLPCNHTLCKPCFQST-VEKASLCCPFCRRRVSSWTRYHTR 69
Query: 124 WGLKKNFALLELIEK 138
N L +I+K
Sbjct: 70 RNSLVNVELWTIIQK 84
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 45.8 bits (108), Expect = 4e-06
Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 10/78 (12%)
Query: 62 LELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYS 121
LE + C C+++ P C H VC CL R K +CP R Y
Sbjct: 75 LEQSFMCVCCQELV-----YQPVTTECFHNVCKDCLQRS-FKAQVFSCPACRHDLGQNYI 128
Query: 122 GVWGLKKNFALLELIEKI 139
+ N L L++
Sbjct: 129 ----MIPNEILQTLLDLF 142
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.10A {Homo sapiens} PDB:
3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 44.8 bits (106), Expect = 4e-06
Identities = 26/114 (22%), Positives = 39/114 (34%), Gaps = 14/114 (12%)
Query: 62 LELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYS 121
LE EC +C + CGH C AC+++ I+D CP D +
Sbjct: 15 LESKYECPICLMAL-----REAVQTPCGHRFCKACIIKS-IRDAGHKCPVDNEILLENQ- 67
Query: 122 GVWGLKKNFALLELIEKIQTN--DEKATESIPLFSAELHIK-CDFSLQLHIKCD 172
L + I + +E + L E H C+F+L H
Sbjct: 68 ----LFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALLEHHHHH 117
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 43.1 bits (102), Expect = 9e-06
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 14/76 (18%)
Query: 66 LECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRL----PIKDDTITCPFDRQPTPVGYS 121
+ C +C ++ K P C H+ C AC+ D CP R P P G
Sbjct: 20 VTCPICLELL-----KEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG-- 72
Query: 122 GVWGLKKNFALLELIE 137
LK N + ++E
Sbjct: 73 ---NLKPNLHVANIVE 85
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 42.5 bits (100), Expect = 9e-06
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 62 LELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQP 115
+E +C C + P+ CGH C +C+ L + + C ++
Sbjct: 12 VEDKYKCEKCHLVL-----CSPKQTECGHRFCESCMAAL-LSSSSPKCTACQES 59
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 44.0 bits (103), Expect = 1e-05
Identities = 22/151 (14%), Positives = 45/151 (29%), Gaps = 29/151 (19%)
Query: 66 LECRVCEDIF--LTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGV 123
+ C +C D + + Q ++ CGH C CL + TCP R+
Sbjct: 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL--KNANTCPTCRKKINHKRYHP 65
Query: 124 WGLKKNFALLELIEKIQTNDEKATESIPLFSAELHIKCDFSLQLHIKCDE--DESHIAVL 181
+ + + +E + + +C H+ C + +S
Sbjct: 66 IYIGSGTVSCPICM------DGYSEIVQNGRLIVSTEC-----GHVFCSQCLRDSLKNAN 114
Query: 182 YCTVCASHLCEQCASDSHATRTLQKHRRIPL 212
C C + +++ I +
Sbjct: 115 TCPTCRKKINH------------KRYHPIYI 133
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.43.1.1 PDB: 2dq5_A
Length = 84
Score = 41.4 bits (97), Expect = 3e-05
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 12/92 (13%)
Query: 205 QKHRRI-PLSEKPREKPFCSSHPTNIAEFICLEEHCQTSAQYPPLMCFICKDYGRHKTHK 263
+ P+ + C H C+ L+C +CK GRH+ H+
Sbjct: 3 SGSSGVEPVPDTHLRGITCLDHENEKVNMYCVS--DDQ------LICALCKLVGRHRDHQ 54
Query: 264 HALVEIEAENLRSYVKNASSNVQHLIEEITES 295
A + E L+ ++ + +L++ S
Sbjct: 55 VASLNDRFEKLKQTLEMN---LTNLVKSGPSS 83
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 42.0 bits (99), Expect = 4e-05
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 11/80 (13%)
Query: 62 LELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLR-LPIKDDTITCPFDRQPTPVGY 120
++ LEC +C ++ K P C H C C+L+ L K CP +
Sbjct: 18 MQKILECPICLELI-----KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR- 71
Query: 121 SGVWGLKKNFALLELIEKIQ 140
L+++ +L+E++
Sbjct: 72 ----SLQESTRFSQLVEELL 87
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63,
muscle-specific ring finger protein 1, MURF1, ring
finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Length = 64
Score = 39.4 bits (92), Expect = 1e-04
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 213 SEKPREKPFCSSHPTNIAEFICLEEHCQTSAQYPPLMCFICKDYGRHKTHKHALVEIEAE 272
S P C H CL C+ C +CK +G HK + A ++ +
Sbjct: 2 SSGSSGHPMCKEHEDEKINIYCLT--CEV------PTCSMCKVFGIHKACEVAPLQSVFQ 53
Query: 273 NLRS 276
++
Sbjct: 54 GQKT 57
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 40.0 bits (93), Expect = 4e-04
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 61 ILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQP 115
+LE L+C +C + F L+C H+ C C+ I CP R+
Sbjct: 60 VLENELQCIICSEYF-----IEAVTLNCAHSFCSYCINE--WMKRKIECPICRKD 107
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 38.2 bits (89), Expect = 6e-04
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 10/84 (11%)
Query: 66 LECRVCEDIFLTQGDKVPRLLH-CGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVW 124
L C +C+DI ++ CG++ C C+ ++ D TCP Q
Sbjct: 14 LLCLICKDIM-----TDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQN----DVSPD 64
Query: 125 GLKKNFALLELIEKIQTNDEKATE 148
L N L + + +
Sbjct: 65 ALIANKFLRQAVNNFKNETGYTKR 88
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 38.2 bits (89), Expect = 8e-04
Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 13/80 (16%)
Query: 62 LELALECRVCEDIFLTQGDKVPRLL-HCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGY 120
++ L C +C + F + ++ C H C C+ + CP
Sbjct: 19 IDDLLRCGICFEYF-----NIAMIIPQCSHNYCSLCIRKFLSYKT--QCPTCCVTVTEP- 70
Query: 121 SGVWGLKKNFALLELIEKIQ 140
LK N L EL++ +
Sbjct: 71 ----DLKNNRILDELVKSLN 86
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite
motif protein 34, interferon- responsive finger protein
1; NMR {Homo sapiens}
Length = 79
Score = 37.2 bits (87), Expect = 8e-04
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 15/77 (19%)
Query: 66 LECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRL-----PIKDDTITCPFDRQPTPVGY 120
+ C +C ++ P L CGH++C AC+ +CP
Sbjct: 13 VTCPICLELL-----TEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE- 66
Query: 121 SGVWGLKKNFALLELIE 137
L+ N L ++E
Sbjct: 67 ----HLQANQHLANIVE 79
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 39.2 bits (91), Expect = 0.001
Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 12/116 (10%)
Query: 66 LECRVCEDIFLTQGDKVPR-LLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVW 124
L C +C D+ K C H C C++ ++ CP R+ S
Sbjct: 55 LMCPICLDML-----KNTMTTKECLHRFCADCIITA-LRSGNKECPTCRKKLVSKRS--- 105
Query: 125 GLKKNFALLELIEKIQTNDEKATESIPLFSAELHIKCDFSLQLHIKCDEDESHIAV 180
L+ + LI KI + ++ A ++ + L +E A+
Sbjct: 106 -LRPDPNFDALISKIYPSRDEYEAHQERVLARINKHNN-QQALSHSIEEGLKIQAM 159
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 38.9 bits (90), Expect = 0.001
Identities = 30/182 (16%), Positives = 53/182 (29%), Gaps = 38/182 (20%)
Query: 66 LECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWG 125
EC +C + CGH C AC+++ I+D CP D +
Sbjct: 19 YECPICLMAL-----REAVQTPCGHRFCKACIIKS-IRDAGHKCPVDNEILLENQ----- 67
Query: 126 LKKNFALLELIEKIQTNDEKATESIPLFSAELHIKCDFSLQL-HIKCDEDESHIAVLYCT 184
L + I + C ++L H++ + A++ C
Sbjct: 68 LFPDNFAKREILSLMVKCPNEG-------------CLHKMELRHLEDHQAHCEFALMDCP 114
Query: 185 VCASHLCEQCASDSHATRTLQKHRRIPLSEKPREKPFCSSHPTNIAEFICLEEHCQTSAQ 244
C + + H + PR + C + ++ F E H Q
Sbjct: 115 QCQRPFQK---------FHINIHIL---KDCPRRQVSCDNCAASM-AFEDKEIHDQNCPL 161
Query: 245 YP 246
Sbjct: 162 AL 163
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 38.0 bits (88), Expect = 0.001
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 66 LECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQP 115
+ C++CE I P C H C C+LR +K CP R P
Sbjct: 24 ISCQICEHILAD-----PVETSCKHLFCRICILRC-LKVMGSYCPSCRYP 67
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 37.9 bits (88), Expect = 0.001
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Query: 55 RTTRILILELA--LECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFD 112
RTTRI I EL L C +C F+ ++ C H+ C C++R + + CP
Sbjct: 3 RTTRIKITELNPHLMCVLCGGYFI----DATTIIECLHSFCKTCIVR--YLETSKYCPIC 56
Query: 113 RQPTPVGYSGVWGLKKNFALLELIEKI 139
+ ++ + L +++ K+
Sbjct: 57 DVQVHKTRP-LLNIRSDKTLQDIVYKL 82
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 36.7 bits (85), Expect = 0.001
Identities = 13/55 (23%), Positives = 16/55 (29%), Gaps = 7/55 (12%)
Query: 66 LECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGY 120
EC +C P L C H C C+ C RQ P +
Sbjct: 16 PECAICLQTC-----VHPVSLPCKHVFCYLCVKG--ASWLGKRCALCRQEIPEDF 63
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 36.9 bits (86), Expect = 0.001
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 14/76 (18%)
Query: 66 LECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLR----LPIKDDTITCPFDRQPTPVGYS 121
+ C +C ++ P L CGH+ C ACL + +CP R
Sbjct: 20 VTCPICLELL-----TQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE-- 72
Query: 122 GVWGLKKNFALLELIE 137
++ N + ++E
Sbjct: 73 ---NIRPNRHVANIVE 85
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 36.7 bits (85), Expect = 0.001
Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 7/54 (12%)
Query: 63 ELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPT 116
E+ C +C F + P + C H C +C L C QPT
Sbjct: 13 EIPFRCFICRQAF-----QNPVVTKCRHYFCESCALEHFRATP--RCYICDQPT 59
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 39.2 bits (91), Expect = 0.002
Identities = 8/37 (21%), Positives = 12/37 (32%)
Query: 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQD 492
D+ D +T A K D + +K D
Sbjct: 104 DAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVD 140
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 39.7 bits (92), Expect = 0.002
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 61 ILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQP 115
+ C++C + K ++ CGH +C +CL + + CPF R
Sbjct: 328 MGSTFQLCKICAEND-----KDVKIEPCGHLMCTSCLTSW-QESEGQGCPFCRCE 376
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 37.8 bits (87), Expect = 0.002
Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 6/50 (12%)
Query: 66 LECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQP 115
C C ++ + P CGH C CL + + C
Sbjct: 32 YLCSACRNVL-----RRPFQAQCGHRYCSFCLASI-LSSGPQNCAACVHE 75
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 36.0 bits (83), Expect = 0.006
Identities = 21/80 (26%), Positives = 27/80 (33%), Gaps = 15/80 (18%)
Query: 62 LELALECRVCEDIFLTQGDKVP-RLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGY 120
LE L C C +I + P L C H C C+ I CP P +
Sbjct: 19 LEKLLRCSRCTNIL-----REPVCLGGCEHIFCSNCVSDC-IGT---GCPVCYTPAWIQ- 68
Query: 121 SGVWGLKKNFALLELIEKIQ 140
LK N L +I+
Sbjct: 69 ----DLKINRQLDSMIQLCS 84
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 34.7 bits (80), Expect = 0.006
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 66 LECRVCEDIFLTQGDKVPRLL-HCGHTVCLACLLRLPIKDDTITCPFDRQP 115
L C +C+DI ++ CG++ C C+ ++ D TCP Q
Sbjct: 16 LLCLICKDIM-----TDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQN 61
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 35.3 bits (81), Expect = 0.007
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 12/77 (15%)
Query: 66 LECRVCEDIFLTQGDKVPRLL-HCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVW 124
C +C + + RL HC C +C+ R + + CP R P +
Sbjct: 23 FRCFICMEKL-----RDARLCPHCSKLCCFSCIRRW-LTEQRAQCPHCRAPLQLR----- 71
Query: 125 GLKKNFALLELIEKIQT 141
L E+ +++ T
Sbjct: 72 ELVNCRWAEEVTQQLDT 88
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 33.9 bits (78), Expect = 0.012
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 66 LECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRL-PIKDDTITCPFDRQPTP 117
+ C +C DI + P + CGH CL C+ ++ CP +
Sbjct: 21 VICPICLDIL-----QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo
sapiens}
Length = 78
Score = 33.9 bits (77), Expect = 0.014
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 8/54 (14%)
Query: 159 IKCDFSLQLHIKCDEDESHIAVLYCTVCASHLCEQCASDSHATRT-LQKHRRIP 211
+ C F CD+D + AV C C C++C +H + HR I
Sbjct: 31 VLCQF-------CDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIE 77
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 33.7 bits (77), Expect = 0.016
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 65 ALECRVCEDIF--LTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQP 115
+ C +C D + + Q ++ CGH C CL + TCP R+
Sbjct: 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDS--LKNANTCPTCRKK 65
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 33.9 bits (77), Expect = 0.016
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 63 ELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQP 115
E +EC +C + L D CG+ +C C R+ D+ CP R+P
Sbjct: 9 EDPVECPLCMEP-LEIDDINFFPCTCGYQICRFCWHRI-RTDENGLCPACRKP 59
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 36.5 bits (84), Expect = 0.017
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 7/93 (7%)
Query: 456 DSADKERLPEALAELTKLI--AEKELKDAALLLLANKQDIPGCETVESITEAF--DLYKL 511
D E L + + K + K DA + +L +K D+ + E + + +L +
Sbjct: 89 DVESTEVL-KDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSET 147
Query: 512 CCGRSWHIQACNAQSG--EGLHEGLDWLSRQLI 542
+ S E L++ + LI
Sbjct: 148 SSEFGFPNLIGFPTSIWDESLYKAWSQIVCSLI 180
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 33.6 bits (77), Expect = 0.018
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 6/54 (11%)
Query: 62 LELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQP 115
L + C +C+ + C HT C +C++R + CP
Sbjct: 12 LTPYILCSICKGYL----IDATTITECLHTFCKSCIVRH--FYYSNRCPKCNIV 59
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 33.3 bits (76), Expect = 0.019
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 66 LECRVCEDIF--LTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQP 115
+ C +C D + + Q ++ CGH C CL + TCP R+
Sbjct: 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDS--LKNANTCPTCRKK 60
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 32.8 bits (75), Expect = 0.025
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 66 LECRVCEDIF--LTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQP 115
+ C +C D + + Q ++ CGH C CL + TCP R+
Sbjct: 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDS--LKNANTCPTCRKK 53
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 32.4 bits (74), Expect = 0.034
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 66 LECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRL-PIKDDTITCP 110
+ C +C DI + P + CGH CL C+ ++ CP
Sbjct: 21 VICPICLDIL-----QKPVTIDCGHNFCLKCITQIGETSCGFFKCP 61
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like
fold, coiled coil, cytoplasm, metal-binding, muscle
protein, nucleus; 1.90A {Homo sapiens} PDB: 3q1d_A
Length = 48
Score = 31.4 bits (71), Expect = 0.046
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 8/47 (17%)
Query: 217 REKPFCSSHPTNIAEFICLEEHCQTSAQYPPLMCFICKDYGRHKTHK 263
P C H CL C+ C +CK +G HK +
Sbjct: 4 GSHPMCKEHEDEKINIYCLT--CEV------PTCSMCKVFGIHKACE 42
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 58
Score = 31.9 bits (73), Expect = 0.048
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 66 LECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRL-PIKDDTITCP 110
C VC + K P ++ CGH C AC+ R + CP
Sbjct: 16 ASCSVCLEYL-----KEPVIIECGHNFCKACITRWWEDLERDFPCP 56
>3kzw_A Cytosol aminopeptidase; hydrolase, manganese binding, protease,
structural genomics; 2.70A {Staphylococcus aureus subsp}
Length = 515
Score = 35.0 bits (81), Expect = 0.064
Identities = 18/114 (15%), Positives = 43/114 (37%), Gaps = 18/114 (15%)
Query: 446 RVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLL-LANKQDIPGCETVESITE 504
R++T+GL + + + + + L + I + ++D LL+ + + + +
Sbjct: 94 RLITVGLGNLKTRSYQDMLKIWGHLFQYIKSEHIEDTYLLMDSFISKYDQLSDVLMACGI 153
Query: 505 A-------FDLYK----LCCGRSWHIQACNAQSGEGLHEGLDWLSRQLIAAGVN 547
FD YK + ++ + + + +HEG I +N
Sbjct: 154 QSERATYEFDHYKSSKKAPFKTNLNLISESLIELDFIHEG------ISIGQSIN 201
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one
sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP:
g.43.1.1 PDB: 2dif_A
Length = 53
Score = 31.2 bits (71), Expect = 0.074
Identities = 10/60 (16%), Positives = 17/60 (28%), Gaps = 9/60 (15%)
Query: 213 SEKPREKPFCSSHPTNIAEFICLEEHCQTSAQYPPLMCFICKDYGRHKTHKHALVEIEAE 272
S + C H + C E+ +C IC H+ H + +
Sbjct: 2 SSGSSGESLCPQHHEAL-SLFCYEDQE--------AVCLICAISHTHRAHTVVPLSGPSS 52
>3pei_A Cytosol aminopeptidase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-beta sandwich;
HET: MSE; 2.70A {Francisella tularensis subsp}
Length = 486
Score = 34.6 bits (80), Expect = 0.091
Identities = 9/72 (12%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Query: 437 VHIGPKMEMRVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGC 496
+ G K V+ LGL + +A+ + + + +K+ ++ + ++
Sbjct: 55 LLHGDK---IVILLGLGLRQDFIASEYDKIIAKAAEQLKKLAIKEISVDIDYAFENDNVK 111
Query: 497 ETVESITEAFDL 508
+ A
Sbjct: 112 QFTLDTVRALIS 123
>3h8g_F Cytosol aminopeptidase; hydrolase, manganese, metal-binding,
proteas; HET: BES; 1.50A {Pseudomonas putida} PDB:
3h8e_A 3h8f_A*
Length = 497
Score = 34.2 bits (79), Expect = 0.10
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 9/74 (12%)
Query: 446 RVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLL--LANKQDIPGCETVESIT 503
RV+ +G ++ + +A + ++ DA L L +A +
Sbjct: 72 RVLLVGSGKDEALGDRTWRKLVASVAGVLKGLNGADAVLALDDVAVNNRDAHYGKYRLLA 131
Query: 504 EA-------FDLYK 510
E FD +K
Sbjct: 132 ETLLDGEYVFDRFK 145
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger
protein 88, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 59
Score = 30.6 bits (69), Expect = 0.12
Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 9/60 (15%)
Query: 213 SEKPREKPFCSSHPTNIAEFICLEEHCQTSAQYPPLMCFICKDYGRHKTHKHALVEIEAE 272
S + ++ C+ H + F CQ + ++C++C+ H+ H +
Sbjct: 8 SPEGQKVDHCARHGEKLLLF------CQEDGK---VICWLCERSQEHRGHHTFPTSGPSS 58
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 65
Score = 30.7 bits (69), Expect = 0.14
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 66 LECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQP 115
C C+ + CGHT+C +C+ L CP P
Sbjct: 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLL-FVRGAGNCPECGTP 52
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
g.43.1.1
Length = 67
Score = 30.3 bits (68), Expect = 0.19
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 171 CDEDESHIAVLYCTVCASHL-CEQCASDSHATRTLQKHRRIPLSEKPREK 219
C+ED A L C C L C +C + H L++H+ P + +
Sbjct: 14 CNED----ATLRCAGCDGDLYCARCFREGHDNFDLKEHQTSPYHPRRPCQ 59
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 29.9 bits (68), Expect = 0.21
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 67 ECRVC-EDIFLTQGDKVPRLLHCGHTVCLACL 97
C +C EDI V +L CGH + C
Sbjct: 7 GCPICLEDIH--TSRVVAHVLPCGHLLHRTCY 36
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.44.1.1
Length = 114
Score = 31.4 bits (70), Expect = 0.28
Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 80 DKVPRLLHCGHTVCLACL---LRLPIKDDTITCPFDRQPT 116
V RL C H L CL KD ++ CP +
Sbjct: 53 MVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4,
UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 94
Score = 30.6 bits (69), Expect = 0.28
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 67 ECRVCEDIFLTQGDKVPRLLHCGHTVCLACL---LRLPIKD---DTITCPFDRQPT 116
C++C + +++ + C C CL + L IK+ I+CP P
Sbjct: 7 GCKLCLGEY--PVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPK 60
>3kr4_A M17 leucyl aminopeptidase; protease, hydrolase; HET: BES 1PE; 2.00A
{Plasmodium falciparum} PDB: 3kqz_A* 3kqx_A* 3kr5_A*
3t8w_A*
Length = 528
Score = 32.8 bits (75), Expect = 0.31
Identities = 8/68 (11%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 446 RVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEA 505
V +G S + + + L ++ + +L ++ N +E++
Sbjct: 103 AVGYVGCGSVADLSEADMKRVVLSLVTMLHDNKLSKLTVVFEINVDKNLFRFFLETLFYE 162
Query: 506 ---FDLYK 510
+ +K
Sbjct: 163 YMTDERFK 170
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain,
structural genomics, NPPSFA; 1.80A {Homo sapiens}
Length = 50
Score = 29.0 bits (65), Expect = 0.40
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
Query: 215 KPREKP-FCSSHPTNIAEFICLEEHCQTSAQYPPLMCFICKDYGRHKTHKHALVE 268
+ E+ +C+ H C E C T L C C+ HK H++ +E
Sbjct: 1 RDGERTVYCNVHKHEPLVLFC--ESCDT------LTCRDCQL-NAHKDHQYQFLE 46
>3jru_B Probable cytosol aminopeptidase; bacterial blight, XOO0834, PEPA,
xanthomonas oryzae PV. ORYZ KACC10331, hydrolase,
manganese; 2.60A {Xanthomonas oryzae PV}
Length = 490
Score = 32.3 bits (74), Expect = 0.44
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 446 RVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEA 505
RV+ +GL A +A+ + T+ + + A L L + + +I +A
Sbjct: 74 RVLVVGLGDAGKFGVAPYLKAIGDATRALKTGAVGTALLTLTEL--TVKARDAAWNIRQA 131
Query: 506 FDLYKLCCGR 515
+ R
Sbjct: 132 VTVSDHAAYR 141
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.51
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 9/27 (33%)
Query: 442 KMEMRVVTLGLDSADSADKERLPEALA 468
K++ L L + DSA P ALA
Sbjct: 24 KLQAS---LKLYADDSA-----P-ALA 41
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 29.5 bits (66), Expect = 0.52
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 68 CRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQP 115
C C+ Q D V C H+ C+ +++ CP +Q
Sbjct: 29 CLRCQAEN-KQEDCVVVWGECNHSFHNCCMSLWVKQNN--RCPLCQQD 73
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 29.8 bits (66), Expect = 0.64
Identities = 13/48 (27%), Positives = 16/48 (33%), Gaps = 5/48 (10%)
Query: 68 CRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQP 115
C C G R++ C H C C + K D CP P
Sbjct: 4 CDKCGLPIKVYG----RMIPCKHVFCYDCAILHEKKGDK-MCPGCSDP 46
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29,
ataxia-telangiectasia group D-associated protein, ATDC,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.43.1.1
Length = 72
Score = 28.9 bits (65), Expect = 0.69
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 181 LYCTVCASHLCEQCASDSHATRTLQKHRRIPLSEKPREK 219
L+C + +C C H + H + + E EK
Sbjct: 30 LFCQTDQTCICYLCMFQEH-----KNHSTVTVEEAKAEK 63
>2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase,
oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism,
glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB:
2bhl_A* 1qki_A*
Length = 489
Score = 31.0 bits (71), Expect = 1.2
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 6/54 (11%)
Query: 414 NELTPEQIHPDPCIPITF-TKDNRVHIGPKMEMRVVTLGLDSADSADKERLPEA 466
NEL ++ P+ + TK G L L + +LP+A
Sbjct: 362 NELVI-RVQPNEAVYTKMMTKKP----GMFFNPEESELDLTYGNRYKNVKLPDA 410
>1dpg_A G6PD, glucose 6-phosphate dehydrogenase; oxidoreductase, NADP/NAD,
glucose metabolism, oxidoreductase (CHOH(D) - NAD(P));
2.00A {Leuconostoc mesenteroides} SCOP: c.2.1.3 d.81.1.5
PDB: 1e7y_A* 1e7m_A* 1h93_A 1h94_A* 1h9a_A* 1e77_A*
1h9b_A 2dpg_A*
Length = 485
Score = 30.6 bits (70), Expect = 1.4
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 420 QIHPDPCIPITF-TKDNRVHIGPKMEMRVVTLGLDSADSADKERLPEA 466
I P I + K + R + LG +D DK+ PE
Sbjct: 372 IIDPKGAIELKLNAKS----VEDAFNTRTIDLGWTVSD-EDKKNTPEP 414
>1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A
{Escherichia coli} SCOP: c.56.5.3 c.50.1.1
Length = 503
Score = 30.4 bits (69), Expect = 1.7
Identities = 7/64 (10%), Positives = 19/64 (29%), Gaps = 1/64 (1%)
Query: 446 RVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANK-QDIPGCETVESITE 504
R++ +G D+ + + + + + + +A L + V E
Sbjct: 72 RILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVE 131
Query: 505 AFDL 508
Sbjct: 132 TAKE 135
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 27.8 bits (62), Expect = 1.7
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 8/50 (16%)
Query: 67 ECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLR-LPIKDDTITCPFDRQP 115
C +C + L C H C C+ R + TCP + P
Sbjct: 7 RCPICLEDP----SNYSMALPCLHAFCYVCITRWIRQNP---TCPLCKVP 49
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 30.2 bits (69), Expect = 2.0
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 13/73 (17%)
Query: 476 EKELK--DAAL-----LLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGE 528
KE+ D AL L+ NK D+ E V+++ +A + +A +G
Sbjct: 257 RKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALA------REGLAVLPVSALTGA 310
Query: 529 GLHEGLDWLSRQL 541
GL + L +
Sbjct: 311 GLPALKEALHALV 323
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 28.0 bits (62), Expect = 2.0
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 67 ECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTP 117
C +C + L QG CG + L C+ + + CP P
Sbjct: 17 ICNICHSL-LIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 29.2 bits (65), Expect = 2.6
Identities = 9/54 (16%), Positives = 13/54 (24%), Gaps = 15/54 (27%)
Query: 200 ATRTLQKHRRIPLSEKPREK---PFCSSHPTNI------AEFIC------LEEH 238
TR R P C +P I + +C L +
Sbjct: 2 MTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDK 55
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite
motif protein 41, TRIM41, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 57
Score = 26.8 bits (59), Expect = 3.4
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 9/53 (16%)
Query: 215 KPREKPFCSSHPTNIAEFICLEEHCQTSAQYPPLMCFICKDYGRHKTHKHALV 267
+ ++ C H + F C + +C +C++ HK H +
Sbjct: 14 RVTDQGICPKHQEALKLF-CEVDEE--------AICVVCRESRSHKQHSVVPL 57
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 75
Score = 27.0 bits (60), Expect = 3.9
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 12/55 (21%)
Query: 62 LELALECRVCEDIFLTQGDKVPRLLHCGHTV-CLACLLRLPIKDDTITCPFDRQP 115
L+ C++C D + + CGH V C C + CP
Sbjct: 22 LQEEKLCKICMD-----RNIAIVFVPCGHLVTCKQCAEAVD------KCPMCYTV 65
>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form,
enzyme-metal COMP isomerase; 2.00A {Pyrococcus
horikoshii}
Length = 455
Score = 29.1 bits (66), Expect = 4.4
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 7/45 (15%)
Query: 278 VKNASSNVQHLIEEITESVNTVDLVVSKIEGNTG-----PSGTEP 317
+ V + E +V+T D KI G SGTEP
Sbjct: 383 RHAIVNKVAEMARERGYTVDTTDGA--KIIFEDGWVLVRASGTEP 425
>1ka5_A Phosphocarrier protein HPR; open faced beta-sandwich, structural
proteomics in europe, spine, structural genomics, ligand
transport; NMR {Staphylococcus aureus} SCOP: d.94.1.1
PDB: 1qr5_A 1txe_A
Length = 88
Score = 27.2 bits (61), Expect = 4.7
Identities = 11/58 (18%), Positives = 28/58 (48%), Gaps = 11/58 (18%)
Query: 429 ITFTKDNRVHIGPKMEMRVVTLGLD-------SADSADKERLPEALAELTKLIAEKEL 479
I + + + K M V++LG+ AD +D+ +A+ ++ +++++ L
Sbjct: 33 IQLEYNGKK-VNLKSIMGVMSLGVGKDAEITIYADGSDES---DAIQAISDVLSKEGL 86
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.5 bits (63), Expect = 4.8
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 8/49 (16%)
Query: 137 EKIQTNDEKATESIPLFSAELHIKC--------DFSLQLHIKCDEDESH 177
+I ++ ++ EL+ KC + +Q K E E
Sbjct: 181 NEILFSENNDMDNNNDGVDELNKKCTFWDAISKLYYVQFFFKQAEQEQA 229
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase
complex, ring zinc-finger, UBL conjugation pathway;
2.10A {Homo sapiens} PDB: 2yhn_A
Length = 79
Score = 26.7 bits (59), Expect = 5.0
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 12/55 (21%)
Query: 62 LELALECRVCEDIFLTQGDKVPRLLHCGHTV-CLACLLRLPIKDDTITCPFDRQP 115
L+ A+ C VC + + CGHTV C +C +L +CP R
Sbjct: 15 LKEAMLCMVCCE-----EEINSTFCPCGHTVCCESCAAQLQ------SCPVCRSR 58
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 27.7 bits (61), Expect = 5.0
Identities = 11/49 (22%), Positives = 18/49 (36%)
Query: 168 HIKCDEDESHIAVLYCTVCASHLCEQCASDSHATRTLQKHRRIPLSEKP 216
+ + D D + C CA + + +H K R LS +P
Sbjct: 38 NAEFDPDLPGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVEP 86
>4e9i_A Glucose-6-phosphate 1-dehydrogenase; pentose phosphate pathway,
alpha beta, NAD(P) rossmann-like domain, oxidoreductase;
2.85A {Trypanosoma cruzi} PDB: 4em5_A*
Length = 541
Score = 28.7 bits (65), Expect = 5.2
Identities = 8/60 (13%), Positives = 15/60 (25%), Gaps = 10/60 (16%)
Query: 412 LFNELTPEQ----IHPDPCIPITF-TKDNRVHIGPKMEMRVVTLGLDSADSADKERLPEA 466
+ P + + K G + L L + + LP+A
Sbjct: 409 FGESTQRNELVIRAQPSEAMYLKLTAKTP----GLLNDTHQTELDL-TYERRYDVTLPDA 463
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 26.6 bits (59), Expect = 5.4
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 10/51 (19%)
Query: 62 LELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLR-LPIKDDTITCPF 111
L EC +C D + +L C H+ C C+ + CP
Sbjct: 12 LTDEEECCICMD------GRADLILPCAHSFCQKCIDKWSDRHR---NCPI 53
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 28.5 bits (63), Expect = 5.8
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 461 ERLPEALAELTKLI--AEKELKDAALLLLANKQD 492
+ A+ L +I A K + +L +K D
Sbjct: 84 DEYINAITNLAMIIEYAYKVNPSINIEVLIHKVD 117
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 26.5 bits (58), Expect = 5.9
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 188 SHLCEQCASDSHATRTLQKHRRIPLSEKP 216
+ +CE+C DS L K +K
Sbjct: 39 TPMCEKCRKDSCQEAALNKDEGNESGKKT 67
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter
vinelandii} PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A*
1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A*
3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Length = 492
Score = 28.6 bits (64), Expect = 6.0
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 16/68 (23%)
Query: 443 MEMRVVTLGLDSADSADKERLPEALAELTKLIA-------EKELKD--AALLL------- 486
+ M VV G + A + D +R + + + T L E+ +K L+
Sbjct: 370 LGMEVVGTGYEFAHNDDYDRTMKEMGDSTLLYDDVTGYEFEEFVKRIKPDLIGSGIKEKF 429
Query: 487 LANKQDIP 494
+ K IP
Sbjct: 430 IFQKMGIP 437
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 25.7 bits (56), Expect = 6.2
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 188 SHLCEQCASDSHATRTLQKHRRIPLSEKP 216
CE C L +H+ EKP
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKP 40
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring,
ATP-binding, chromosomal protein, coiled coil, DNA
damage; 2.31A {Saccharomyces cerevisiae}
Length = 267
Score = 28.0 bits (61), Expect = 7.0
Identities = 9/85 (10%), Positives = 21/85 (24%), Gaps = 9/85 (10%)
Query: 66 LECRVCEDIFLTQGDKVP-RLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVW 124
L C + + + P C H + T CP V
Sbjct: 182 LTCPITCKPY-----EAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR--- 233
Query: 125 GLKKNFALLELIEKIQTNDEKATES 149
++ + + + + + +
Sbjct: 234 DFVRDPIMELRCKIAKMKESQEQDK 258
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase
cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A
{Azotobacter vinelandii}
Length = 483
Score = 28.3 bits (63), Expect = 7.5
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 443 MEMRVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDI 493
+ M+VV G + DK R+ E + + K++ E + + + DI
Sbjct: 354 LGMKVVATGTKKSTEEDKARIRELMGDDVKMLDEGNARVLLKTVDEYQADI 404
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 28.3 bits (62), Expect = 7.7
Identities = 11/65 (16%), Positives = 16/65 (24%), Gaps = 12/65 (18%)
Query: 63 ELALECRVCEDIFLTQG---DKVPRLLHCGHTVCLACLL---------RLPIKDDTITCP 110
L C +C L G C CL + ++ CP
Sbjct: 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCP 365
Query: 111 FDRQP 115
F +
Sbjct: 366 FCKAK 370
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 27.3 bits (61), Expect = 9.4
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 460 KERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDL 508
K L AL + K + ++L AA+L + +K + E + +T+ F
Sbjct: 2 KHALTGALGNMKKFQSSQKLAQAAMLFMGSK--LTTLEETKELTQIFRQ 48
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.409
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,289,202
Number of extensions: 498984
Number of successful extensions: 1459
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1405
Number of HSP's successfully gapped: 132
Length of query: 550
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 452
Effective length of database: 3,965,535
Effective search space: 1792421820
Effective search space used: 1792421820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.3 bits)