RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15732
(550 letters)
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 59.6 bits (143), Expect = 4e-11
Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 443 MEMRVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESI 502
+ D AD++R+ EA EL ++I ++E++DA +L+ ANKQD+P I
Sbjct: 75 HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEI 134
Query: 503 TEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541
E L R+W++Q A SG+GL+EGL WL+
Sbjct: 135 QEKLGL-TRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 54.3 bits (129), Expect = 3e-09
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 456 DSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCG- 514
D AD ERL E+ EL L+ ++ + + +L+L NK D P + E + E F LY G
Sbjct: 89 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGK 148
Query: 515 ----------RSWHIQACNAQSGEGLHEGLDWLSRQL 541
R + C+ +G EG W+++ +
Sbjct: 149 GSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 53.0 bits (126), Expect = 8e-09
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 1/133 (0%)
Query: 409 YDTLFNELTPEQIHPDPCIPITFTKDNRVHIGPKMEMRVVTLGLDSADSADKERLPEALA 468
T + Q ++ + + + DSAD++R E
Sbjct: 45 TPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQ 104
Query: 469 ELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGE 528
ELT+L+ E++L +L+ ANKQD+ I E +L+ + R W IQ+C+A +GE
Sbjct: 105 ELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIR-DRVWQIQSCSALTGE 163
Query: 529 GLHEGLDWLSRQL 541
G+ +G++W+ + +
Sbjct: 164 GVQDGMNWVCKNV 176
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 52.7 bits (125), Expect = 1e-08
Identities = 39/87 (44%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Query: 455 ADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCG 514
DS DK+R+ A EL ++ E+EL+DAALL+ ANKQD PG + +++ +L +
Sbjct: 92 VDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVE-LKD 150
Query: 515 RSWHIQACNAQSGEGLHEGLDWLSRQL 541
RSW I A +A GEG+ EGLDWL +
Sbjct: 151 RSWSIVASSAIKGEGITEGLDWLIDVI 177
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 50.1 bits (118), Expect = 8e-08
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Query: 411 TLFNELTPEQIHPDPCIPITFTKDNRVHIGPKMEMRVVTLGLDSADSADKERLPEALAEL 470
TL + + + + + DSAD++R+ + EL
Sbjct: 33 TLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQREL 92
Query: 471 TKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGL 530
L+ E+ L A LL+ ANKQD+PG + +I EA +L + W IQ C+A +GE L
Sbjct: 93 QSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIR-SHHWRIQGCSAVTGEDL 151
Query: 531 HEGLDWLSRQLIA 543
G+DWL + +
Sbjct: 152 LPGIDWLLDDISS 164
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 48.2 bits (113), Expect = 3e-07
Identities = 32/135 (23%), Positives = 44/135 (32%), Gaps = 6/135 (4%)
Query: 411 TLFNELTPEQIHPDPCIPITFTKDNRVHIGPKMEMRVVTLGLDSADSADKERLPEALAEL 470
T I + K V + D+AD ER EA EL
Sbjct: 31 TWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVEL 90
Query: 471 TKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLY------KLCCGRSWHIQACNA 524
L ELKD ++L NK D P + + A L ++ R + C+
Sbjct: 91 DALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 150
Query: 525 QSGEGLHEGLDWLSR 539
G E WLS+
Sbjct: 151 VMRNGYLEAFQWLSQ 165
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 47.3 bits (111), Expect = 8e-07
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 1/138 (0%)
Query: 404 ETIEKYDTLFNELTPEQIHPDPCIPITFTKDNRVHIGPKMEMRVVTLGLDSADSADKERL 463
E + T+ + + I+ + + + DS D+ER+
Sbjct: 39 EVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERI 98
Query: 464 PEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACN 523
EL K++A ++L+ A LL+ ANKQD+ C TV I++ L WHIQAC
Sbjct: 99 SVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKL-TSIKDHQWHIQACC 157
Query: 524 AQSGEGLHEGLDWLSRQL 541
A +GEGL +GL+W+ +L
Sbjct: 158 ALTGEGLCQGLEWMMSRL 175
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 46.2 bits (108), Expect = 1e-06
Identities = 45/99 (45%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Query: 443 MEMRVVTLGLDSADSADKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESI 502
+ + DS D+ER+ EA EL +++AE EL+DA LL+ ANKQD+P I
Sbjct: 63 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEI 122
Query: 503 TEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541
T+ L R+W+IQA A SG+GL+EGLDWLS QL
Sbjct: 123 TDKLGL-HSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 44.7 bits (105), Expect = 2e-06
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 57 TRILILELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLR-LPIKDDTITCPFDRQP 115
I ++ LEC +C ++ K P C H C C+L+ L K CP +
Sbjct: 13 NVINAMQKILECPICLELI-----KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKND 67
Query: 116 TPVGYSGVWGLKKNFALLELIEKIQ 140
L+++ +L+E++
Sbjct: 68 ITKR-----SLQESTRFSQLVEELL 87
>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 71
Score = 42.3 bits (99), Expect = 5e-06
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
Query: 211 PLSEKPREKPFCSSHPTNIAEFICLEEHCQTSAQYPPLMCFICKDYGRHKTHKHALVEIE 270
P+ + C H C+ + L+C +CK GRH+ H+ A +
Sbjct: 3 PVPDTHLRGITCLDHENEKVNMYCVSDDQ--------LICALCKLVGRHRDHQVASLNDR 54
Query: 271 AENLRSYVKNASSNVQ 286
E L+ ++ +N+
Sbjct: 55 FEKLKQTLEMNLTNLV 70
Score = 25.7 bits (56), Expect = 3.4
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 168 HIKCDEDESHIAVLYCTVCASHLCEQCASDSHATRTLQKHRRIPLSE 214
I C + E+ +YC +C C + H+ L++
Sbjct: 11 GITCLDHENEKVNMYCVSDDQLICALCKLVGRH----RDHQVASLND 53
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 43.5 bits (101), Expect = 1e-05
Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 476 EKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLD 535
+ +L+ +L+L NK+D+PG + + E +L R + + + + + L
Sbjct: 99 KPQLQGIPVLVLGNKRDLPGALDEKELIEKMNL-SAIQDREICCYSISCKEKDNIDITLQ 157
Query: 536 WLSRQL 541
WL +
Sbjct: 158 WLIQHS 163
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 40.2 bits (94), Expect = 2e-05
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 10/54 (18%)
Query: 66 LECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVG 119
L C+ C+ K P+LL C HT+C CL + CP + P P+G
Sbjct: 7 LRCQQCQAEA-----KCPKLLPCLHTLCSGCLEA-----SGMQCPICQAPWPLG 50
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 39.7 bits (92), Expect = 3e-05
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 66 LECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQP 115
+EC +C + D CG+ +C C R+ D+ CP R+P
Sbjct: 1 VECPLCMEPL-EIDDINFFPCTCGYQICRFCWHRI-RTDENGLCPACRKP 48
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 37.8 bits (86), Expect = 0.001
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 486 LLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541
+ ANKQD+ T + + R W I +A G GL E ++WL L
Sbjct: 111 VFANKQDMEQAMTSSEMANSLG-LPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1
(RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 36.0 bits (83), Expect = 0.001
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 65 ALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQP 115
++ C++CE I P C H C C+LR +K CP R P
Sbjct: 23 SISCQICEHIL-----ADPVETSCKHLFCRICILRC-LKVMGSYCPSCRYP 67
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 34.5 bits (79), Expect = 0.002
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 62 LELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPV 118
++ +EC VC G++ L CGH C+ TCP R V
Sbjct: 2 MDDGVECAVCLAEL-EDGEEARFLPRCGHGFHAECVDMWLGSHS--TCPLCRLTVVV 55
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 34.8 bits (79), Expect = 0.002
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 66 LECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQP 115
C C+ + CGHT+C +C+ L CP P
Sbjct: 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLL-FVRGAGNCPECGTP 52
>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 51
Score = 34.5 bits (79), Expect = 0.002
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 8/57 (14%)
Query: 220 PFCSSHPTNIAEFICLEEHCQTSAQYPPLMCFICKDYGRHKTHKHALVEIEAENLRS 276
P C H CL C +CK +G HK + A ++ + ++
Sbjct: 2 PMCKEHEDEKINIYCLTCEV--------PTCSMCKVFGIHKACEVAPLQSVFQGQKT 50
Score = 26.0 bits (57), Expect = 1.6
Identities = 12/48 (25%), Positives = 14/48 (29%), Gaps = 6/48 (12%)
Query: 168 HIKCDEDESHIAVLYCTVCASHLCEQCA-SDSHATRTLQKHRRIPLSE 214
H C E E +YC C C C H + PL
Sbjct: 1 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH-----KACEVAPLQS 43
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 35.5 bits (81), Expect = 0.002
Identities = 19/88 (21%), Positives = 27/88 (30%), Gaps = 13/88 (14%)
Query: 62 LELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYS 121
LE L C C +I + L C H C C+ CP P +
Sbjct: 19 LEKLLRCSRCTNIL----REPVCLGGCEHIFCSNCVSDC----IGTGCPVCYTPAWIQ-- 68
Query: 122 GVWGLKKNFALLELIEKIQTNDEKATES 149
LK N L +I+ ++
Sbjct: 69 ---DLKINRQLDSMIQLCSKLRNLLHDN 93
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 34.5 bits (78), Expect = 0.003
Identities = 7/53 (13%), Positives = 12/53 (22%)
Query: 63 ELALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQP 115
E C +C + + + V +CL C
Sbjct: 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVV 56
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 33.4 bits (76), Expect = 0.008
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 68 CRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQP 115
C++C + K ++ CGH +C +CL + + CPF R
Sbjct: 26 CKICAEND-----KDVKIEPCGHLMCTSCLTSW-QESEGQGCPFCRCE 67
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 33.1 bits (75), Expect = 0.010
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 11/73 (15%)
Query: 66 LECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQPTPVGYSGVWG 125
C + ++ K P ++ G T + + + + TCP ++ G
Sbjct: 9 FRCPISLELM-----KDPVIVSTGQTYERSSIQKW-LDAGHKTCPKSQETLL-----HAG 57
Query: 126 LKKNFALLELIEK 138
L N+ L LI
Sbjct: 58 LTPNYVLKSLIAL 70
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 32.2 bits (73), Expect = 0.015
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 64 LALECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQP 115
+A C +C + L C H C C+ R ++ TCP + P
Sbjct: 4 VAERCPICLEDP----SNYSMALPCLHAFCYVCITRWIRQNP--TCPLCKVP 49
>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 47
Score = 31.4 bits (71), Expect = 0.019
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 8/48 (16%)
Query: 221 FCSSHPTNIAEFICLEEHCQTSAQYPPLMCFICKDYGRHKTHKHALVE 268
C H C+ + L+C +CK GRH+ H+ A +
Sbjct: 7 MCLEHEDEKVNMYCVTDDQ--------LICALCKLVGRHRDHQVAALS 46
Score = 25.2 bits (55), Expect = 3.7
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 6/47 (12%)
Query: 169 IKCDEDESHIAVLYCTVCASHLCEQCA-SDSHATRTLQKHRRIPLSE 214
+ C E E +YC +C C H + H+ LSE
Sbjct: 6 LMCLEHEDEKVNMYCVTDDQLICALCKLVGRH-----RDHQVAALSE 47
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 33.5 bits (75), Expect = 0.039
Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 7/152 (4%)
Query: 395 SGREIKEAIETIEKYDTLFNELTPEQIHPDPCIPITFTKDNRVHIGPKMEMRVVTLGLDS 454
+ ++ +I D+ + ++ +
Sbjct: 21 LTGQYRDTQTSIT--DSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFV 78
Query: 455 ADSADKERLPEALA-ELTKLIAEKELKDAA--LLLLANKQDIPGCETVESITEAF--DLY 509
DSA +R + +A L +++ + + LL+ NKQDI ++ + I + +L
Sbjct: 79 VDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELN 138
Query: 510 KLCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541
L RS ++ S G +
Sbjct: 139 TLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEF 170
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 31.5 bits (70), Expect = 0.071
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 80 DKVPRLLHCGHTVCLACL---LRLPIKDDTITCPFDRQP 115
V RL C H L CL KD ++ CP +
Sbjct: 53 MVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTI 91
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 32.2 bits (72), Expect = 0.080
Identities = 8/71 (11%), Positives = 23/71 (32%), Gaps = 4/71 (5%)
Query: 472 KLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLH 531
K + + + ++L+ NK D+ V + + + +A +
Sbjct: 100 KELRDHADSNIVIMLVGNKSDLRHLRAVPTD----EARAFAEKNNLSFIETSALDSTNVE 155
Query: 532 EGLDWLSRQLI 542
E + ++
Sbjct: 156 EAFKNILTEIY 166
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 31.0 bits (69), Expect = 0.20
Identities = 6/37 (16%), Positives = 15/37 (40%)
Query: 506 FDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542
+ K S +A++ +G+ + L ++I
Sbjct: 133 NEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKII 169
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 31.3 bits (70), Expect = 0.21
Identities = 19/198 (9%), Positives = 54/198 (27%), Gaps = 17/198 (8%)
Query: 302 VVSKIEGNTGPSGTEPGTGDQARAKVHAYFNHLRESLLVQEAAATSAVDMFVRERLGCLV 361
+S + + + L E + + A + + + L+
Sbjct: 59 SISPFQSEGPRPVMVSRSRAGFTLNII-DTPGLIEGGYINDMALNIIKSFLLDKTIDVLL 117
Query: 362 QLHDDMGFWLQEVAKLYLKCEQMILQDDAR-----VLTSGREIKEAIETIEKYDTLFNEL 416
+ + + + KL K LT + +++ + +E
Sbjct: 118 YVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEA 177
Query: 417 TPEQIHPDPCIPITFTKDNRVHIGPKMEMRVVTLGLDSADSADKER-LPEALAELTKL-- 473
+ + + + + + ++ + E+ LP +A + L
Sbjct: 178 LLQVVR-------SGASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQ 230
Query: 474 -IAEKELKDAALLLLANK 490
I E L + + +
Sbjct: 231 TITEVALNKSESIFVDKN 248
>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29
{Human (Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 28.7 bits (64), Expect = 0.24
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 5/39 (12%)
Query: 181 LYCTVCASHLCEQCASDSHATRTLQKHRRIPLSEKPREK 219
L+C + +C C H H + + E EK
Sbjct: 23 LFCQTDQTCICYLCMFQEHKN-----HSTVTVEEAKAEK 56
Score = 25.2 bits (55), Expect = 5.0
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 10/63 (15%)
Query: 214 EKPREKPFCSSHPTNIAEFICLEEHCQTSAQYPPLMCFICKDYGRHKTHKHALVEIEAEN 273
+ E C H + E C + +C++C HK H VE
Sbjct: 6 IRDFEARKCPVHGKTM-ELFCQTDQT--------CICYLCMF-QEHKNHSTVTVEEAKAE 55
Query: 274 LRS 276
+
Sbjct: 56 KET 58
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 31.1 bits (69), Expect = 0.25
Identities = 13/106 (12%), Positives = 35/106 (33%), Gaps = 22/106 (20%)
Query: 459 DKERLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVES----------------- 501
++ R+ E+ A +I ++++++L NK+D+ + + S
Sbjct: 90 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQ 149
Query: 502 -----ITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542
I + F + + A E + + ++
Sbjct: 150 AAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 195
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 30.3 bits (67), Expect = 0.32
Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 470 LTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEG 529
+++ KE ++ LL+ NK D+ + + + +A++
Sbjct: 98 REQILRVKEDENVPFLLVGNKSDLEDKR----QVSVEEAKNRADQWNVNYVETSAKTRAN 153
Query: 530 LHEGLDWLSRQLIA 543
+ + L R++ A
Sbjct: 154 VDKVFFDLMREIRA 167
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 30.3 bits (67), Expect = 0.42
Identities = 5/34 (14%), Positives = 13/34 (38%)
Query: 509 YKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542
+ +A +GE + E +R+++
Sbjct: 134 SRFAQENELMFLETSALTGENVEEAFVQCARKIL 167
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 30.0 bits (66), Expect = 0.48
Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 485 LLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541
L+ NK D+ + + KL + +A++GE +++ + ++
Sbjct: 112 ALVGNKIDMLQEGGERKVARE-EGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 29.5 bits (65), Expect = 0.64
Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 8/140 (5%)
Query: 406 IEKYDTLFNELTPEQIHPDPCIPITFTKDNRVHIGPKMEMRVVTLGLDSA----DSADKE 461
IEKYD + ++I D + D + +++
Sbjct: 29 IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQ 88
Query: 462 RLPEALAELTKLIAEKELKDAALLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQA 521
+ ++I K + ++L+ NK D+ V S + L
Sbjct: 89 SFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSS----EGRALAEEWGCPFME 144
Query: 522 CNAQSGEGLHEGLDWLSRQL 541
+A+S + E + RQ+
Sbjct: 145 TSAKSKTMVDELFAEIVRQM 164
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 28.1 bits (62), Expect = 0.71
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 67 ECRVCEDIFLTQGDKVPRLLHCGHTVCLACL---LRLPIKD---DTITCPFDRQPTPV 118
C++C + +++ + C C CL + L IK+ I+CP P
Sbjct: 7 GCKLCLGEY--PVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli
[TaxId: 562]}
Length = 229
Score = 29.2 bits (64), Expect = 0.93
Identities = 12/82 (14%), Positives = 30/82 (36%)
Query: 418 PEQIHPDPCIPITFTKDNRVHIGPKMEMRVVTLGLDSADSADKERLPEALAELTKLIAEK 477
PE I + + + + PK ++ ++ + DSA + + L L ++
Sbjct: 20 PELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQ 79
Query: 478 ELKDAALLLLANKQDIPGCETV 499
A++ ++ + V
Sbjct: 80 LSNQASVGGISFSTNANNGLMV 101
>d2d8va1 g.43.1.1 (A:8-61) Zinc finger FYVE domain-containing
protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 54
Score = 26.8 bits (59), Expect = 0.98
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 171 CDEDESHIAVLYCTVCASHL-CEQCASDSHATRTLQKHRRIPLSEKPREK 219
C+ED A L C C L C +C + H L++H+ P + +
Sbjct: 7 CNED----ATLRCAGCDGDLYCARCFREGHDNFDLKEHQTSPYHPRRPCQ 52
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 28.5 bits (62), Expect = 1.4
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 6/54 (11%)
Query: 489 NKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542
NK DI + ++ +A+S + WL+R+LI
Sbjct: 115 NKVDIKDRKVK------AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 162
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 27.9 bits (61), Expect = 2.2
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 507 DLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541
D KL +A++G + ++++L
Sbjct: 134 DGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 168
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 27.5 bits (60), Expect = 2.9
Identities = 4/37 (10%), Positives = 14/37 (37%)
Query: 506 FDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQLI 542
+L +A +G+ + + ++ L ++
Sbjct: 142 RQARELADKYGIPYFETSAATGQNVEKAVETLLDLIM 178
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 25.5 bits (55), Expect = 3.4
Identities = 6/50 (12%), Positives = 12/50 (24%), Gaps = 6/50 (12%)
Query: 66 LECRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQP 115
+ C + + + + L DT P +P
Sbjct: 1 MLCAISGKVP----RRPVLSPKSRTIFEKSLL--EQYVKDTGNDPITNEP 44
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 27.0 bits (59), Expect = 4.4
Identities = 4/32 (12%), Positives = 10/32 (31%)
Query: 512 CCGRSWHIQACNAQSGEGLHEGLDWLSRQLIA 543
+A++ + L+R + A
Sbjct: 138 ALDYGIKFMETSAKANINVENAFFTLARDIKA 169
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 25.9 bits (56), Expect = 5.2
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 68 CRVCEDIFLTQGDKVPRLLHCGHTVCLACLLRLPIKDDTITCPFDRQP 115
C+ + ++ V C H C+ R CP D +
Sbjct: 38 CQANQASATSEECTV-AWGVCNHAFHFHCISRWLKTRQ--VCPLDNRE 82
>d1ka5a_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein
(HPr) {Staphylococcus aureus [TaxId: 1280]}
Length = 88
Score = 25.4 bits (56), Expect = 6.1
Identities = 11/58 (18%), Positives = 28/58 (48%), Gaps = 11/58 (18%)
Query: 429 ITFTKDNRVHIGPKMEMRVVTLGLD-------SADSADKERLPEALAELTKLIAEKEL 479
I + + + K M V++LG+ AD +D+ +A+ ++ +++++ L
Sbjct: 33 IQLEYNGKK-VNLKSIMGVMSLGVGKDAEITIYADGSDES---DAIQAISDVLSKEGL 86
>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 39
Score = 24.0 bits (52), Expect = 6.4
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 235 LEEHCQTSAQYPPLMCFICKDYGRHKTHKH 264
L+ +C+ L C IC+D +H +H
Sbjct: 10 LKLYCKDDGT---LSCVICRDSLKHASHNF 36
>d1cm3a_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein
(HPr) {Escherichia coli [TaxId: 562]}
Length = 85
Score = 25.4 bits (56), Expect = 6.4
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 11/57 (19%)
Query: 429 ITFTKDNRVHIGPKMEMRVVTLGLD-------SADSADKERLPEALAELTKLIAEKE 478
IT T + + K ++ TLGL SA+ D++ +A+ L KL+AE E
Sbjct: 33 ITVTSNGKS-ASAKSLFKLQTLGLTQGTVVTISAEGEDEQ---KAVEHLVKLMAELE 85
>d2gmfa_ a.26.1.2 (A:) Granulocyte-macrophage colony-stimulating
factor (GM-CSF) {Human (Homo sapiens) [TaxId: 9606]}
Length = 121
Score = 26.0 bits (57), Expect = 6.7
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 483 ALLLLANKQDIPGC--ETVESITEAFDLYKLCC 513
A LL +D ETVE I+E FDL + C
Sbjct: 19 ARRLLNLSRDTAAEMNETVEVISEMFDLQEPTC 51
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 26.4 bits (57), Expect = 7.0
Identities = 8/58 (13%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 484 LLLLANKQDIPGCETVESITEAFDLYKLCCGRSWHIQACNAQSGEGLHEGLDWLSRQL 541
++L+ NK D+ V + + +A++GE + + ++++
Sbjct: 112 IILIGNKADLEAQRDVTYE----EAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.409
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,014,335
Number of extensions: 94999
Number of successful extensions: 340
Number of sequences better than 10.0: 1
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 64
Length of query: 550
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 460
Effective length of database: 1,171,896
Effective search space: 539072160
Effective search space used: 539072160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.5 bits)