Query psy15733
Match_columns 200
No_of_seqs 112 out of 413
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 20:01:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15733.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15733hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02838 3-hydroxyacyl-CoA deh 100.0 6.8E-65 1.5E-69 430.9 13.5 181 17-198 6-187 (221)
2 KOG3187|consensus 100.0 3.3E-58 7.1E-63 387.9 12.9 186 13-198 2-187 (223)
3 PF04387 PTPLA: Protein tyrosi 100.0 1.1E-52 2.4E-57 342.5 6.8 132 67-198 1-132 (164)
4 COG5198 Ptpl Protein tyrosine 100.0 5.4E-41 1.2E-45 272.5 12.8 156 18-175 4-159 (209)
5 PF01151 ELO: GNS1/SUR4 family 91.5 3 6.6E-05 35.9 10.9 134 13-152 29-181 (250)
6 PTZ00251 fatty acid elongase; 79.1 29 0.00063 30.6 10.5 131 13-152 52-201 (272)
7 PF14333 DUF4389: Domain of un 52.2 85 0.0018 22.4 6.8 45 22-66 14-58 (80)
8 PF08058 NPCC: Nuclear pore co 26.2 2.9E+02 0.0063 21.9 6.5 27 58-84 78-104 (144)
9 COG4392 Predicted membrane pro 25.6 81 0.0018 24.3 3.0 44 117-166 8-52 (107)
10 PF06324 Pigment_DH: Pigment-d 19.3 52 0.0011 17.4 0.5 11 73-83 3-13 (18)
No 1
>PLN02838 3-hydroxyacyl-CoA dehydratase subunit of elongase
Probab=100.00 E-value=6.8e-65 Score=430.95 Aligned_cols=181 Identities=29% Similarity=0.564 Sum_probs=173.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHhhHHHHHHHHHHHHHHhhhhhccccccchhhhHHhhhcc
Q psy15733 17 NPLVKIYLLAYNFGQVIGWSYLLLQIIGHYLSINKTTSLWDTVQWTVIIFQNAALIEVVNVALGFVKSNLALTFFQVMSR 96 (200)
Q Consensus 17 ~~l~~~YL~~YN~~~~~gW~~iL~~~~~~~~~~g~~~~~y~~v~~~l~~~Q~~a~lEilh~~~Glvrs~~~~t~~Qv~sR 96 (200)
++++|.||++||++|++||++||++++.++...|+ +++|+.+++.++++|++|++||+|+++|+||||+.+|++||+||
T Consensus 6 ~~l~~~YL~~YN~~~~~gW~~il~~~~~~~~~~~~-~~~~~~v~~~l~~~QtlAilEilHa~~GlVrS~v~~T~~QV~sR 84 (221)
T PLN02838 6 SLLRRLYLTVYNWVVFIGWAQVLYLAVTTLKESGH-EAVYAAVERPLQLAQTAAVLEILHGLVGLVRSPVSATLPQIGSR 84 (221)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcchHHHHHHHH
Confidence 46899999999999999999999999999888774 57899999999999999999999999999999999999999999
Q ss_pred eeeeeeeeccCCCCCCCCchhHHHHHHHHHHHhHHHHHHHHh-hCCCCchhhhhhhccceeeechhhhHHHHHHHHhhhh
Q psy15733 97 VMVVVGVLIATPTGPASPGLPLCLLAWTITEIIRYLFYALNL-INAVPDILVWCRYTFFIALYPIGITGELLCIWWAQSY 175 (200)
Q Consensus 97 ~~ivw~v~~~~p~~~~~~~~~~l~laWsitEiiRY~yY~~~l-~~~~p~~L~WLRYt~FivLYPlGv~~E~~~~~~al~~ 175 (200)
++++|+|++..|+.+++++++.|++|||++|+|||+||++++ +|.+|++|+|||||+|+||||+|+.||+.+||+|+|+
T Consensus 85 ~~iv~~v~~~~p~~~~~~~~~~l~~aWs~tEvIRY~yY~~~~~~~~~p~~L~WLRYt~FivLYPlGi~~E~~~i~~al~~ 164 (221)
T PLN02838 85 LFLTWGILWSFPEVRSHILVTSLVISWSITEIIRYSFFGMKEAFGFAPSWLLWLRYSTFLLLYPTGITSEVGLIYIALPY 164 (221)
T ss_pred HHHHHHHhhcCcchhcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHhccceecchHHHHHHHHHHHhchh
Confidence 999999999999999999999999999999999999999986 5999999999999999999999999999999999999
Q ss_pred hhhcceeeeeCCCceeeeeeccc
Q psy15733 176 VAETKLWSMELPNALNFTKPMGF 198 (200)
Q Consensus 176 ~~~~~~~~~~mPN~~nf~f~~~~ 198 (200)
+++++.|+.+|||++||+|||++
T Consensus 165 ~~~~~~~s~~~Pn~~n~sf~~~~ 187 (221)
T PLN02838 165 MKASEKYCLRMPNKWNFSFDYFY 187 (221)
T ss_pred hhcccccchhcCcccccchhHHH
Confidence 99999999999999999999865
No 2
>KOG3187|consensus
Probab=100.00 E-value=3.3e-58 Score=387.90 Aligned_cols=186 Identities=41% Similarity=0.682 Sum_probs=179.8
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHhhHHHHHHHHHHHHHHhhhhhccccccchhhhHHh
Q psy15733 13 SKEPNPLVKIYLLAYNFGQVIGWSYLLLQIIGHYLSINKTTSLWDTVQWTVIIFQNAALIEVVNVALGFVKSNLALTFFQ 92 (200)
Q Consensus 13 ~~~~~~l~~~YL~~YN~~~~~gW~~iL~~~~~~~~~~g~~~~~y~~v~~~l~~~Q~~a~lEilh~~~Glvrs~~~~t~~Q 92 (200)
+++++.+++.||++||++|++||.+++..+......+|+.+++||++++.++++|++|++|++|+.+|+|||++++|++|
T Consensus 2 ~~~l~~~~~~yL~~YNl~~fvgw~~~~l~~~~~~~~~~~~~~~y~si~~~l~~~Qtla~lEi~~~~~g~v~S~~v~t~~Q 81 (223)
T KOG3187|consen 2 SKELGMLKKSYLFLYNLVSFVGWIVLLLATVVLYLTKGSPAVLYDSIEKVLKFCQTLALLEIINASFGLVKSSPVVTLFQ 81 (223)
T ss_pred CCcccchhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCccccHHHHHHHHHHHHHHHHHHHHHHHhccccCCceeeeee
Confidence 36677899999999999999999999999999888888678899999999999999999999999999999999999999
Q ss_pred hhcceeeeeeeeccCCCCCCCCchhHHHHHHHHHHHhHHHHHHHHhhCCCCchhhhhhhccceeeechhhhHHHHHHHHh
Q psy15733 93 VMSRVMVVVGVLIATPTGPASPGLPLCLLAWTITEIIRYLFYALNLINAVPDILVWCRYTFFIALYPIGITGELLCIWWA 172 (200)
Q Consensus 93 v~sR~~ivw~v~~~~p~~~~~~~~~~l~laWsitEiiRY~yY~~~l~~~~p~~L~WLRYt~FivLYPlGv~~E~~~~~~a 172 (200)
|.||++++|++++..++++.++++..++++|+++|+|||+||++++++..|++++|||||+|++|||+|+.||+.+++++
T Consensus 82 v~sRl~il~~i~~~~~~~~~~~~~~~l~~~ws~tEIiRY~fY~f~~~~~~p~~l~wlRYt~Fi~LYP~Gi~~E~l~i~~a 161 (223)
T KOG3187|consen 82 VSSRLFILWGIFHMCSIIQASAVVFFLLIAWSLTEIIRYSFYAFNLLGVLPKLLTWLRYTLFILLYPIGITSELLTLYAA 161 (223)
T ss_pred ecccceehhhhhhccchhhccchHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhHhhhhhheeeecceehhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcceeeeeCCCceeeeeeccc
Q psy15733 173 QSYVAETKLWSMELPNALNFTKPMGF 198 (200)
Q Consensus 173 l~~~~~~~~~~~~mPN~~nf~f~~~~ 198 (200)
+|++++++.++++|||++|++|||++
T Consensus 162 l~~~~~~~~~sv~~pn~~n~~f~~~~ 187 (223)
T KOG3187|consen 162 LPAAGETERFSVVMPNKLNISFDFFS 187 (223)
T ss_pred HHHhcccceeEEEcCccccchhHHHH
Confidence 99999999999999999999999864
No 3
>PF04387 PTPLA: Protein tyrosine phosphatase-like protein, PTPLA; InterPro: IPR007482 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This family includes the mammalian protein tyrosine phosphatase-like protein, PTPLA. A significant variation of PTPLA from other protein tyrosine phosphatases is the presence of proline instead of catalytic arginine at the active site. It is thought that PTPLA proteins have a role in the development, differentiation, and maintenance of a number of tissue types [].
Probab=100.00 E-value=1.1e-52 Score=342.52 Aligned_cols=132 Identities=47% Similarity=0.846 Sum_probs=130.0
Q ss_pred HHHHHHHhhhhhccccccchhhhHHhhhcceeeeeeeeccCCCCCCCCchhHHHHHHHHHHHhHHHHHHHHhhCCCCchh
Q psy15733 67 QNAALIEVVNVALGFVKSNLALTFFQVMSRVMVVVGVLIATPTGPASPGLPLCLLAWTITEIIRYLFYALNLINAVPDIL 146 (200)
Q Consensus 67 Q~~a~lEilh~~~Glvrs~~~~t~~Qv~sR~~ivw~v~~~~p~~~~~~~~~~l~laWsitEiiRY~yY~~~l~~~~p~~L 146 (200)
|++|++||+|+++|+||||+.+|++||+||++++|++++..|+.+++++++.|++|||++|+|||+||+++++|.+|++|
T Consensus 1 Q~~a~lEi~h~~~Glv~S~~~~t~~Qv~sR~~vv~~v~~~~p~~~~~~~~~~l~~aWsl~EviRY~yY~~~l~~~~p~~L 80 (164)
T PF04387_consen 1 QTLAVLEILHAALGLVRSPVLTTFMQVFSRLFVVWGVIYPFPEVQSSPAVPLLLIAWSLTEVIRYPYYALKLLGIVPYWL 80 (164)
T ss_pred CchHHHHHHHHHhccccCccHHHHHHHHHHHHeehhhhccccccccccchhhHHHHHHhhhcchhHHHHHHhcCCCchHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccceeeechhhhHHHHHHHHhhhhhhhcceeeeeCCCceeeeeeccc
Q psy15733 147 VWCRYTFFIALYPIGITGELLCIWWAQSYVAETKLWSMELPNALNFTKPMGF 198 (200)
Q Consensus 147 ~WLRYt~FivLYPlGv~~E~~~~~~al~~~~~~~~~~~~mPN~~nf~f~~~~ 198 (200)
+|||||+|+||||+|+.||+.++++|+|++++++.++.+|||.+|++|||++
T Consensus 81 ~WLRYs~FivLYPlG~~~E~~~~~~al~~~~~~~~~~~~~pn~~n~~~~~~~ 132 (164)
T PF04387_consen 81 TWLRYSAFIVLYPLGILSELLLIYRALPYIKETKRYSVRMPNSWNFSFSYYY 132 (164)
T ss_pred HHHHHhhHhhccchHHHHHHHHHHHhCcccccCCeeeeecCccccccccHHH
Confidence 9999999999999999999999999999999999999999999999999864
No 4
>COG5198 Ptpl Protein tyrosine phosphatase-like protein (contains Pro instead of catalytic Arg) [General function prediction only]
Probab=100.00 E-value=5.4e-41 Score=272.46 Aligned_cols=156 Identities=31% Similarity=0.471 Sum_probs=142.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHhhHHHHHHHHHHHHHHhhhhhccccccchhhhHHhhhcce
Q psy15733 18 PLVKIYLLAYNFGQVIGWSYLLLQIIGHYLSINKTTSLWDTVQWTVIIFQNAALIEVVNVALGFVKSNLALTFFQVMSRV 97 (200)
Q Consensus 18 ~l~~~YL~~YN~~~~~gW~~iL~~~~~~~~~~g~~~~~y~~v~~~l~~~Q~~a~lEilh~~~Glvrs~~~~t~~Qv~sR~ 97 (200)
.++-.||-+||++++.+|.+++.+....+...++ ..++++......++|++|++|+.|+.+|.|+|++.||.+||.||+
T Consensus 4 ~l~isyl~lYN~~s~f~w~~vlll~~lv~~kt~d-pa~f~et~~va~lvQt~ai~E~~ns~~g~v~S~~LtTv~Qv~SRl 82 (209)
T COG5198 4 ALPISYLRLYNTASCFIWCIVLLLASLVFYKTMD-PAVFHETLRVAGLVQTFAIMEAANSSAGKVNSRYLTTVMQVISRL 82 (209)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHH
Confidence 4556899999999999999999988887777665 458889999999999999999999999999999999999999999
Q ss_pred eeeeeeeccCCCCCCCCchhHHHHHHHHHHHhHHHHHHHHhhCCCCchhhhhhhccceeeechhhhHHHHHHHHhhhh
Q psy15733 98 MVVVGVLIATPTGPASPGLPLCLLAWTITEIIRYLFYALNLINAVPDILVWCRYTFFIALYPIGITGELLCIWWAQSY 175 (200)
Q Consensus 98 ~ivw~v~~~~p~~~~~~~~~~l~laWsitEiiRY~yY~~~l~~~~p~~L~WLRYt~FivLYPlGv~~E~~~~~~al~~ 175 (200)
+++||++++....-+++.+..+.+|||++|++||.||++++-| .|..|+|+|||+|.+|||+|+.+|+.|++.+..-
T Consensus 83 ~ivwgvf~p~~~~i~s~~y~s~~~aWsiteivRYafY~F~lng-~p~~l~~lRYNlFlilyPiG~~sE~~~~~~~~na 159 (209)
T COG5198 83 FIVWGVFYPYCGIINSWTYPSITTAWSITEIVRYAFYTFRLNG-IPNTLRVLRYNLFLILYPIGFVSEMYCLRALYNA 159 (209)
T ss_pred HHHHhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHhcC-CchhhhhhhhhhhhhhcchHHHHHHHHHHHHHHH
Confidence 9999999765555558999999999999999999999999855 7999999999999999999999999999987653
No 5
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=91.53 E-value=3 Score=35.89 Aligned_cols=134 Identities=18% Similarity=0.281 Sum_probs=80.5
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----C-----------CCcchhH-hhHHHHHHHHHHHHHHhhh
Q psy15733 13 SKEPNPLVKIYLLAYNFGQVIGWSYLLLQIIGHYLSI----N-----------KTTSLWD-TVQWTVIIFQNAALIEVVN 76 (200)
Q Consensus 13 ~~~~~~l~~~YL~~YN~~~~~gW~~iL~~~~~~~~~~----g-----------~~~~~y~-~v~~~l~~~Q~~a~lEilh 76 (200)
+|+|-.+++ -+.+||+++.+.=++....++...... | ++++..+ .++...-++-.-=+.|.+.
T Consensus 29 ~Rkp~~Lk~-~~~~~N~~l~~~S~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~~~~~~~~~~~~~~~~fylSK~~EllD 107 (250)
T PF01151_consen 29 NRKPFNLKT-LIIVYNLFLVVFSAYMFYGILPALFSSLFKGGLYSSFCQPVDFDPDSYSSGRVGFWYWLFYLSKYYELLD 107 (250)
T ss_pred hCCCcccCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence 455667765 889999999888877777766332211 1 1111111 2222222233334678888
Q ss_pred hhccccccchhhhHHhhh---cceeeeeeeeccCCCCCCCCchhHHHHHHHHHHHhHHHHHHHHhhCCCCchhhhhhhc
Q psy15733 77 VALGFVKSNLALTFFQVM---SRVMVVVGVLIATPTGPASPGLPLCLLAWTITEIIRYLFYALNLINAVPDILVWCRYT 152 (200)
Q Consensus 77 ~~~Glvrs~~~~t~~Qv~---sR~~ivw~v~~~~p~~~~~~~~~~l~laWsitEiiRY~yY~~~l~~~~p~~L~WLRYt 152 (200)
..+=+.|-+ ..++.|+. +=....|......|..+ .....+.=+...++-|+||++..+|.+.....|=||-
T Consensus 108 TvflvLrkK-~lsfLHvYHH~~~~~~~w~~~~~~~~~~----~~~~~~~N~~VH~iMY~YY~l~a~g~~~~~~~~k~~I 181 (250)
T PF01151_consen 108 TVFLVLRKK-QLSFLHVYHHASTLLYCWISYKYGPGGQ----IWFIAALNSFVHVIMYSYYFLSALGIRKVPRWWKKYI 181 (250)
T ss_pred HHHHHHhCC-CcchhHHhhhhhhhhhhhheeeeccccc----hhHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHH
Confidence 888778877 77888887 44555565444433221 1223345567899999999999888653345555553
No 6
>PTZ00251 fatty acid elongase; Provisional
Probab=79.07 E-value=29 Score=30.61 Aligned_cols=131 Identities=13% Similarity=0.184 Sum_probs=75.9
Q ss_pred CCCCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCC-------Ccch-h-HhhHHHHHHHHHHHHHHhhhhh
Q psy15733 13 SKEPNP-LVKIYLLAYNFGQVIGWSYLLLQIIGHY----LSINK-------TTSL-W-DTVQWTVIIFQNAALIEVVNVA 78 (200)
Q Consensus 13 ~~~~~~-l~~~YL~~YN~~~~~gW~~iL~~~~~~~----~~~g~-------~~~~-y-~~v~~~l~~~Q~~a~lEilh~~ 78 (200)
.|+|-. ++ .-+.+||+++.+.=++.....+... ...|- +++. + ...+...-++=..=+.|.+...
T Consensus 52 ~Rkp~~~Lr-~~l~~yNl~l~v~s~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~~~~~~~~~~~~~f~lsK~~El~DTv 130 (272)
T PTZ00251 52 GNPPVPLIK-KCWALWNIGLSVFSMYGVYRVVPPLLNNLRKYGLHDTLCTFREDEFYTGKVGVAMGLFSISKVPEFGDTF 130 (272)
T ss_pred cCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeecCCCCcchhHHHHHHHHHHHHHHHHHHHhHh
Confidence 455666 54 6899999999988888777765322 22220 1111 2 2333333333334467888777
Q ss_pred ccccccchhhhHHhhh---cceeeeeeeeccCCCCCCCCchhHH-HHHHHHHHHhHHHHHHHHhhCCCCchhh-hhhhc
Q psy15733 79 LGFVKSNLALTFFQVM---SRVMVVVGVLIATPTGPASPGLPLC-LLAWTITEIIRYLFYALNLINAVPDILV-WCRYT 152 (200)
Q Consensus 79 ~Glvrs~~~~t~~Qv~---sR~~ivw~v~~~~p~~~~~~~~~~l-~laWsitEiiRY~yY~~~l~~~~p~~L~-WLRYt 152 (200)
+=+.|-+ ..++.+|. +-.+.+|.. ..+ .. ..... ...=+...++=|+||.+..+|.++ ..+ |.||-
T Consensus 131 F~VLRKK-qvsFLHvYHH~~~~~~~w~~--~~~---g~-~~~~~~~~lNs~VH~iMY~YY~lsa~g~~~-~~~~~kk~I 201 (272)
T PTZ00251 131 FLIMGGK-KLPFLSWFHHVTIFLYAWMS--YQQ---GS-SIWICAAAMNYFVHSIMYFYFALSEAGFKK-LVKPFAMYI 201 (272)
T ss_pred hhhhcCC-CchHHHHHHHHHHHHHHHHH--HhC---CC-cHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhHHHHHH
Confidence 7777766 67778776 334555542 111 11 22222 334455789999999999887642 233 66664
No 7
>PF14333 DUF4389: Domain of unknown function (DUF4389)
Probab=52.20 E-value=85 Score=22.43 Aligned_cols=45 Identities=9% Similarity=0.070 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHhhHHHHHHH
Q psy15733 22 IYLLAYNFGQVIGWSYLLLQIIGHYLSINKTTSLWDTVQWTVIIF 66 (200)
Q Consensus 22 ~YL~~YN~~~~~gW~~iL~~~~~~~~~~g~~~~~y~~v~~~l~~~ 66 (200)
.+.++++.++++.|..+++..+..+..+...+..++-.....++.
T Consensus 14 ~~~ivl~~~~~~~~~~~~~q~~~~L~tg~~p~~L~~f~~~l~~y~ 58 (80)
T PF14333_consen 14 PFAIVLSLASIVLGVLVLIQWFAILFTGRYPEPLFDFGAGLSRYI 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHH
Confidence 467889999999999999999988888655566666555555543
No 8
>PF08058 NPCC: Nuclear pore complex component; InterPro: IPR012578 Proteins containing this domain are components of the nuclear pore complex []. One member of this domain is Nucleoporin POM34 (Q12445 from SWISSPROT) which is thought to have a role in anchoring peripheral Nups into the pore and mediating pore formation [].
Probab=26.24 E-value=2.9e+02 Score=21.93 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHHhhhhhcccccc
Q psy15733 58 TVQWTVIIFQNAALIEVVNVALGFVKS 84 (200)
Q Consensus 58 ~v~~~l~~~Q~~a~lEilh~~~Glvrs 84 (200)
.......++|.+-++.|+-|+..|+|.
T Consensus 78 y~~~~~~~i~~i~~~NIv~al~~L~r~ 104 (144)
T PF08058_consen 78 YWSWILHLIQLIFLLNIVIALWPLFRP 104 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345677888999999999999988884
No 9
>COG4392 Predicted membrane protein [Function unknown]
Probab=25.61 E-value=81 Score=24.26 Aligned_cols=44 Identities=23% Similarity=0.237 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHhHHHHHHHHh-hCCCCchhhhhhhccceeeechhhhHHH
Q psy15733 117 PLCLLAWTITEIIRYLFYALNL-INAVPDILVWCRYTFFIALYPIGITGEL 166 (200)
Q Consensus 117 ~~l~laWsitEiiRY~yY~~~l-~~~~p~~L~WLRYt~FivLYPlGv~~E~ 166 (200)
...+.++.+|-+.||.+..+.. .+-+|.+..||+|. |.++..-+
T Consensus 8 l~Ilgmg~VT~l~R~L~l~~~~~~~LP~~v~~~L~fv------P~a~ltAL 52 (107)
T COG4392 8 LVILGMGAVTYLPRMLPLILLLKLRLPPWVRRFLSFV------PVAILTAL 52 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhhc------cHHHHHHH
Confidence 3567889999999999999866 56667688888884 66655443
No 10
>PF06324 Pigment_DH: Pigment-dispersing hormone (PDH); InterPro: IPR009396 This family consists of several eukaryotic pigment-dispersing hormone (PDH) proteins. The pigment-dispersing hormone (PDH) is produced in the eyestalks of Crustacea where it induces light-adapting movements of pigment in the compound eye and regulates the pigment dispersion in the chromatophores [].; GO: 0005179 hormone activity, 0009416 response to light stimulus, 0005576 extracellular region
Probab=19.26 E-value=52 Score=17.38 Aligned_cols=11 Identities=45% Similarity=0.730 Sum_probs=8.9
Q ss_pred Hhhhhhccccc
Q psy15733 73 EVVNVALGFVK 83 (200)
Q Consensus 73 Eilh~~~Glvr 83 (200)
|++++++|+-|
T Consensus 3 elINslLglpk 13 (18)
T PF06324_consen 3 ELINSLLGLPK 13 (18)
T ss_pred HHHHHHHcchh
Confidence 78889888765
Done!