Query psy15733
Match_columns 200
No_of_seqs 112 out of 413
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 20:02:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15733.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15733hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1s99_A YKOF; thiamin-binding p 14.7 83 0.0028 25.5 2.3 30 155-184 119-148 (200)
2 3im4_C Dual specificity A kina 7.5 1.8E+02 0.0062 17.9 1.4 9 121-129 17-25 (45)
3 3ul1_A Nucleoplasmin; arm repe 5.6 2.7E+02 0.0093 14.9 1.3 11 4-14 2-12 (26)
4 2a1i_A DNA excision repair pro 5.5 27 0.00094 27.1 -4.0 16 118-133 114-129 (146)
5 1bde_A VPR protein; AIDS, HIV, 4.7 6.2E+02 0.021 14.7 2.7 20 53-72 3-22 (35)
6 2db7_A Hairy/enhancer-OF-split 4.5 3.1E+02 0.011 17.9 1.3 14 120-133 23-36 (64)
7 2y7l_A NT_ALS9-2, agglutinin-l 3.7 2.8E+02 0.0096 23.9 0.7 21 175-195 44-64 (312)
8 3fze_A Protein STE5; alpha/bet 3.6 5.8E+02 0.02 20.5 2.5 18 20-37 34-51 (196)
9 1rxd_A Protein tyrosine phosph 3.5 2.2E+02 0.0075 20.2 -0.1 19 74-92 100-118 (159)
10 2hwn_E A kinase binding peptid 3.5 5.1E+02 0.018 13.9 1.4 9 121-129 4-12 (26)
No 1
>1s99_A YKOF; thiamin-binding protein, ACT-domain family, ligand binding protein; 1.65A {Bacillus subtilis} SCOP: d.58.48.2 PDB: 1sbr_A* 1s7h_A
Probab=14.73 E-value=83 Score=25.49 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=26.1
Q ss_pred eeeechhhhHHHHHHHHhhhhhhhcceeee
Q psy15733 155 IALYPIGITGELLCIWWAQSYVAETKLWSM 184 (200)
Q Consensus 155 ivLYPlGv~~E~~~~~~al~~~~~~~~~~~ 184 (200)
+-|||+|.--=|-.||..+...|+.+.+.=
T Consensus 119 fslYpmg~~~ym~~I~~~i~~a~~~g~~~~ 148 (200)
T 1s99_A 119 FALYPMNEPDYMGLIMEAVDIAKAQGTFVQ 148 (200)
T ss_dssp EEEEETTCTTHHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEeCCCccHHHHHHHHHHHHHHcCcccC
Confidence 469999999999999999999999887643
No 2
>3im4_C Dual specificity A kinase-anchoring protein 2; four-helix bundle, acetylation, CAMP, CAMP-binding, disulfide bond, nucleotide-binding; 2.29A {Homo sapiens} PDB: 3tmh_D
Probab=7.48 E-value=1.8e+02 Score=17.94 Aligned_cols=9 Identities=56% Similarity=1.221 Sum_probs=7.0
Q ss_pred HHHHHHHHh
Q psy15733 121 LAWTITEII 129 (200)
Q Consensus 121 laWsitEii 129 (200)
+||-++|+|
T Consensus 17 MAWqIA~MI 25 (45)
T 3im4_C 17 LAWKIAKMI 25 (45)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 589998865
No 3
>3ul1_A Nucleoplasmin; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Xenopus laevis}
Probab=5.62 E-value=2.7e+02 Score=14.86 Aligned_cols=11 Identities=36% Similarity=0.329 Sum_probs=6.2
Q ss_pred ccCCCCCCCCC
Q psy15733 4 KTVKDGKAKSK 14 (200)
Q Consensus 4 ~~~~~~~~~~~ 14 (200)
++++.++++++
T Consensus 2 savkrpaatkk 12 (26)
T 3ul1_A 2 SAVKRPAATKK 12 (26)
T ss_dssp CCCCCCCSSCC
T ss_pred cccccchhhhh
Confidence 45666666443
No 4
>2a1i_A DNA excision repair protein ERCC-1; XPF, central domain, DNA repair, endonuclease, DNA binding protein; HET: DNA; 1.90A {Homo sapiens} SCOP: c.52.1.20 PDB: 2jnw_A* 2jpd_A*
Probab=5.46 E-value=27 Score=27.08 Aligned_cols=16 Identities=44% Similarity=0.632 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhHHHH
Q psy15733 118 LCLLAWTITEIIRYLF 133 (200)
Q Consensus 118 ~l~laWsitEiiRY~y 133 (200)
++++|||.-|.-||.=
T Consensus 114 TLiLawS~eEaa~Yle 129 (146)
T 2a1i_A 114 TLILAWSPEEAGRYLE 129 (146)
T ss_dssp EEEEESSHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHH
Confidence 4678999999999975
No 5
>1bde_A VPR protein; AIDS, HIV, viral protein, VPR fragment, helix; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1dsj_A
Probab=4.71 E-value=6.2e+02 Score=14.74 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=15.9
Q ss_pred cchhHhhHHHHHHHHHHHHH
Q psy15733 53 TSLWDTVQWTVIIFQNAALI 72 (200)
Q Consensus 53 ~~~y~~v~~~l~~~Q~~a~l 72 (200)
.|+|+.++...++.|-+-++
T Consensus 3 GDTw~GveaiiriLQq~Lf~ 22 (35)
T 1bde_A 3 GDTWAGVEAIIRILQQLLFI 22 (35)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHH
Confidence 47899999999999876443
No 6
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=4.48 E-value=3.1e+02 Score=17.89 Aligned_cols=14 Identities=29% Similarity=0.363 Sum_probs=10.8
Q ss_pred HHHHHHHHHhHHHH
Q psy15733 120 LLAWTITEIIRYLF 133 (200)
Q Consensus 120 ~laWsitEiiRY~y 133 (200)
-+.=|+.|+.||.=
T Consensus 23 Gf~eC~~EV~rfLs 36 (64)
T 2db7_A 23 GFRECLAEVARYLS 36 (64)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh
Confidence 55678899999853
No 7
>2y7l_A NT_ALS9-2, agglutinin-like ALS9 protein; cell adhesion, adhesin, peptide binding protein; 1.49A {Candida albicans} PDB: 2y7m_A 2y7n_A 2y7o_A 2ylh_A
Probab=3.68 E-value=2.8e+02 Score=23.92 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=16.9
Q ss_pred hhhhcceeeeeCCCceeeeee
Q psy15733 175 YVAETKLWSMELPNALNFTKP 195 (200)
Q Consensus 175 ~~~~~~~~~~~mPN~~nf~f~ 195 (200)
.+++.+.|.+.||..|.|..+
T Consensus 44 ~v~~GDtFtL~MP~VfKf~~~ 64 (312)
T 2y7l_A 44 TADPGDTFTLILPCVFKFITT 64 (312)
T ss_dssp TCCTTCEEEEEEETEEEESSS
T ss_pred cCCCCCEEEEecccEEEEccC
Confidence 356778999999999988753
No 8
>3fze_A Protein STE5; alpha/beta/alpha, VWA-like fold (SCOP), cytoplasm, pheromone response, phosphoprotein, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 4f2h_A
Probab=3.62 E-value=5.8e+02 Score=20.46 Aligned_cols=18 Identities=11% Similarity=0.235 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy15733 20 VKIYLLAYNFGQVIGWSY 37 (200)
Q Consensus 20 ~~~YL~~YN~~~~~gW~~ 37 (200)
.+-++.+||++.++.|=+
T Consensus 34 ~~~~~~i~NslkAL~~Kf 51 (196)
T 3fze_A 34 EDSLIVVYNSLKALTIKF 51 (196)
T ss_dssp THHHHHHHHHHHHHHHHC
T ss_pred CCcEEeehHHHHHHHhcc
Confidence 467999999999999864
No 9
>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine phosphatase IVA1...; structural genomics, NYSGXRC, unknown function, PSI; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A
Probab=3.54 E-value=2.2e+02 Score=20.19 Aligned_cols=19 Identities=11% Similarity=0.228 Sum_probs=15.3
Q ss_pred hhhhhccccccchhhhHHh
Q psy15733 74 VVNVALGFVKSNLALTFFQ 92 (200)
Q Consensus 74 ilh~~~Glvrs~~~~t~~Q 92 (200)
++|+.-|.-||..+..+..
T Consensus 100 lVHC~aG~~Rtg~~~a~~l 118 (159)
T 1rxd_A 100 AVHCVAGLGRAPVLVALAL 118 (159)
T ss_dssp EEECSSSSTTHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 5799999999988876544
No 10
>2hwn_E A kinase binding peptide; PKA, AKAP, dimerization/docking, D/D, regulatory subunit, TR; 1.60A {Rattus norvegicus}
Probab=3.45 E-value=5.1e+02 Score=13.90 Aligned_cols=9 Identities=56% Similarity=1.221 Sum_probs=6.0
Q ss_pred HHHHHHHHh
Q psy15733 121 LAWTITEII 129 (200)
Q Consensus 121 laWsitEii 129 (200)
+||-++.+|
T Consensus 4 mawkiakmi 12 (26)
T 2hwn_E 4 LAWKIAKMI 12 (26)
T ss_pred HHHHHHHHH
Confidence 478777654
Done!