Query psy15733
Match_columns 200
No_of_seqs 112 out of 413
Neff 6.0
Searched_HMMs 13730
Date Fri Aug 16 20:02:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15733.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15733hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1s99a_ d.58.48.2 (A:) Putativ 29.4 13 0.00093 28.2 2.3 31 154-184 110-140 (189)
2 d2e74h1 f.23.27.1 (H:3-29) Pet 14.0 47 0.0034 16.8 1.7 15 115-129 7-21 (27)
3 d2db7a1 a.273.1.1 (A:3-57) Hai 7.5 73 0.0053 19.1 1.2 14 119-132 15-28 (55)
4 d2a1ia1 c.52.1.20 (A:99-227) D 5.1 14 0.001 26.4 -4.0 21 118-139 97-117 (129)
5 d2ibaa2 d.96.1.4 (A:137-295) U 3.9 1.5E+02 0.011 21.2 1.2 18 179-196 109-126 (159)
6 d1gg3a1 a.11.2.1 (A:82-187) Er 3.8 1.7E+02 0.012 18.5 1.3 10 127-136 9-18 (106)
7 d1xria_ c.45.1.1 (A:) Putative 3.8 88 0.0064 21.1 -0.3 19 74-92 96-114 (151)
8 d2d81a1 c.69.1.37 (A:21-338) P 3.2 1.9E+02 0.014 22.4 1.2 21 143-163 245-265 (318)
9 d1h4ra1 a.11.2.1 (A:104-214) M 3.1 2.2E+02 0.016 18.0 1.3 10 127-136 9-18 (111)
10 d1yfoa_ c.45.1.2 (A:) Tyrosine 3.1 96 0.007 23.4 -0.8 24 74-97 223-246 (288)
No 1
>d1s99a_ d.58.48.2 (A:) Putative thiamin/HMP-binding protein YkoF {Bacillus subtilis [TaxId: 1423]}
Probab=29.39 E-value=13 Score=28.24 Aligned_cols=31 Identities=19% Similarity=0.143 Sum_probs=27.0
Q ss_pred ceeeechhhhHHHHHHHHhhhhhhhcceeee
Q psy15733 154 FIALYPIGITGELLCIWWAQSYVAETKLWSM 184 (200)
Q Consensus 154 FivLYPlGv~~E~~~~~~al~~~~~~~~~~~ 184 (200)
=+-|||+|.-=-|--||..+.++|+.+.|.-
T Consensus 110 qfsLYpmg~~d~m~~Iy~~id~~k~~G~~~~ 140 (189)
T d1s99a_ 110 QFALYPMNEPDYMGLIMEAVDIAKAQGTFVQ 140 (189)
T ss_dssp EEEEEETTCTTHHHHHHHHHHHHHHTTCEEE
T ss_pred eEEEEecCCccHHHHHHHHHHHHHHcCCCcc
Confidence 4579999998889999999999999987653
No 2
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=13.99 E-value=47 Score=16.81 Aligned_cols=15 Identities=20% Similarity=0.581 Sum_probs=10.6
Q ss_pred chhHHHHHHHHHHHh
Q psy15733 115 GLPLCLLAWTITEII 129 (200)
Q Consensus 115 ~~~~l~laWsitEii 129 (200)
...+.++.||++-++
T Consensus 7 v~llvvftwsiamvv 21 (27)
T d2e74h1 7 VALLVVFTWSIAMVV 21 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHhhheeeeEE
Confidence 345678899997654
No 3
>d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with YRPW motif protein 1; HESR-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.49 E-value=73 Score=19.09 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhHHH
Q psy15733 119 CLLAWTITEIIRYL 132 (200)
Q Consensus 119 l~laWsitEiiRY~ 132 (200)
+-+.=|.+||.||.
T Consensus 15 ~GF~ECa~EV~RyL 28 (55)
T d2db7a1 15 LGFRECLAEVARYL 28 (55)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHh
Confidence 45667889999984
No 4
>d2a1ia1 c.52.1.20 (A:99-227) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.06 E-value=14 Score=26.36 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHhh
Q psy15733 118 LCLLAWTITEIIRYLFYALNLI 139 (200)
Q Consensus 118 ~l~laWsitEiiRY~yY~~~l~ 139 (200)
++++|||.-|.-||.= .++..
T Consensus 97 TLilaws~eEaa~YlE-~~k~~ 117 (129)
T d2a1ia1 97 TLILAWSPEEAGRYLE-TYKAY 117 (129)
T ss_dssp EEEEESSHHHHHHHHH-HHHTC
T ss_pred EEEEEcCHHHHHHHHH-HHHHh
Confidence 4678999999999953 33444
No 5
>d2ibaa2 d.96.1.4 (A:137-295) Urate oxidase (uricase) {Aspergillus flavus [TaxId: 5059]}
Probab=3.90 E-value=1.5e+02 Score=21.19 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=14.1
Q ss_pred cceeeeeCCCceeeeeec
Q psy15733 179 TKLWSMELPNALNFTKPM 196 (200)
Q Consensus 179 ~~~~~~~mPN~~nf~f~~ 196 (200)
-+.-++.|||+..|-+|.
T Consensus 109 i~~I~~~~PNkH~f~vdl 126 (159)
T d2ibaa2 109 IETVEYSLPNKHYFEIDL 126 (159)
T ss_dssp EEEEEEEEEECCEEECCC
T ss_pred eeEEEEECCccceeeecC
Confidence 345788999998888775
No 6
>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.82 E-value=1.7e+02 Score=18.47 Aligned_cols=10 Identities=30% Similarity=0.577 Sum_probs=8.1
Q ss_pred HHhHHHHHHH
Q psy15733 127 EIIRYLFYAL 136 (200)
Q Consensus 127 EiiRY~yY~~ 136 (200)
|+.||-||.=
T Consensus 9 e~Tr~l~ylQ 18 (106)
T d1gg3a1 9 DITRYYLCLQ 18 (106)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7889999874
No 7
>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=3.77 E-value=88 Score=21.10 Aligned_cols=19 Identities=5% Similarity=0.179 Sum_probs=15.0
Q ss_pred hhhhhccccccchhhhHHh
Q psy15733 74 VVNVALGFVKSNLALTFFQ 92 (200)
Q Consensus 74 ilh~~~Glvrs~~~~t~~Q 92 (200)
++||.-|..||+.+..+.+
T Consensus 96 lvHC~~GkdRTG~v~a~~l 114 (151)
T d1xria_ 96 LIHCKRGKHRTGCLVGCLR 114 (151)
T ss_dssp EEECSSSSSHHHHHHHHHH
T ss_pred EEEcCCCchHHHHHHHHHH
Confidence 4599999999988876554
No 8
>d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]}
Probab=3.16 E-value=1.9e+02 Score=22.35 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=16.6
Q ss_pred Cchhhhhhhccceeeechhhh
Q psy15733 143 PDILVWCRYTFFIALYPIGIT 163 (200)
Q Consensus 143 p~~L~WLRYt~FivLYPlGv~ 163 (200)
-.+-+|..-+-||||||=+..
T Consensus 245 tg~~~~ad~~~~ivlyPq~~~ 265 (318)
T d2d81a1 245 TGYNKWADTNNMIILYPQAIP 265 (318)
T ss_dssp SCHHHHHTTTTEEEEECCBCC
T ss_pred CCHHHHHHhCCeEEEeCCccc
Confidence 456788899999999996543
No 9
>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.14 E-value=2.2e+02 Score=17.98 Aligned_cols=10 Identities=40% Similarity=0.653 Sum_probs=7.4
Q ss_pred HHhHHHHHHH
Q psy15733 127 EIIRYLFYAL 136 (200)
Q Consensus 127 EiiRY~yY~~ 136 (200)
|+.||-||.=
T Consensus 9 e~tr~l~ylQ 18 (111)
T d1h4ra1 9 EITQHLFFLQ 18 (111)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6788888763
No 10
>d1yfoa_ c.45.1.2 (A:) Tyrosine phosphatase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.11 E-value=96 Score=23.44 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=0.0
Q ss_pred hhhhhccccccchhhhHHhhhcce
Q psy15733 74 VVNVALGFVKSNLALTFFQVMSRV 97 (200)
Q Consensus 74 ilh~~~Glvrs~~~~t~~Qv~sR~ 97 (200)
++|+..|.-||.++.++.....++
T Consensus 223 vVHCs~G~gRtG~f~al~~~~~~l 246 (288)
T d1yfoa_ 223 VVHCSAGVGRTGTFVVIDAMLDMM 246 (288)
T ss_dssp EEECSSSSHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcccHHHHHHHHHHHHH
Done!