RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15733
(200 letters)
>gnl|CDD|202993 pfam04387, PTPLA, Protein tyrosine phosphatase-like protein, PTPLA.
This family includes the mammalian protein tyrosine
phosphatase-like protein, PTPLA. A significant variation
of PTPLA from other protein tyrosine phosphatases is the
presence of proline instead of catalytic arginine at the
active site. It is thought that PTPLA proteins have a
role in the development, differentiation, and
maintenance of a number of tissue types.
Length = 161
Score = 155 bits (394), Expect = 1e-48
Identities = 65/127 (51%), Positives = 88/127 (69%), Gaps = 3/127 (2%)
Query: 67 QNAALIEVVNVALGFVKSNLALTFFQVMSRVMVVVGVLIATPTGPASPGLPLCLLAWTIT 126
Q A++E+++ A G V+S + TF QV SR+ VV G+L + P ASP +P L+AW+IT
Sbjct: 1 QTLAVLEILHAAFGLVRSPVLTTFLQVSSRLFVVWGILYSLPEVQASPAVPSLLIAWSIT 60
Query: 127 EIIRYLFYALNLINAVPDILVWCRYTFFIALYPIGITGELLCIWWAQSYVAETKLWSMEL 186
EIIRY +YALNL+ VP L W RYT FI LYP+G+ ELL I+ + Y TK +S+E+
Sbjct: 61 EIIRYSYYALNLLGTVPYWLTWLRYTLFIVLYPLGVLSELLLIYQSLPY---TKKYSLEM 117
Query: 187 PNALNFT 193
PNALNF+
Sbjct: 118 PNALNFS 124
>gnl|CDD|227525 COG5198, Ptpl, Protein tyrosine phosphatase-like protein (contains
Pro instead of catalytic Arg) [General function
prediction only].
Length = 209
Score = 95.0 bits (236), Expect = 2e-24
Identities = 53/162 (32%), Positives = 75/162 (46%), Gaps = 4/162 (2%)
Query: 23 YLLAYNFGQVIGWSYLLLQIIGHYLSINKTTSLWDTVQWTVIIFQNAALIEVVNVALGFV 82
YL YN W +LL + +T++ + Q A++E N + G V
Sbjct: 9 YLRLYNTASCFIWCIVLLLASLVFYKTMDPAVFHETLR-VAGLVQTFAIMEAANSSAGKV 67
Query: 83 KSNLALTFFQVMSRVMVVVGVLIATPTGPASPGLPLCLLAWTITEIIRYLFYALNLINAV 142
S T QV+SR+ +V GV S P AW+ITEI+RY FY L N +
Sbjct: 68 NSRYLTTVMQVISRLFIVWGVFYPYCGIINSWTYPSITTAWSITEIVRYAFYTFRL-NGI 126
Query: 143 PDILVWCRYTFFIALYPIGITGELLCIWWAQSYVAETKLWSM 184
P+ L RY F+ LYPIG E+ C+ Y A K++S+
Sbjct: 127 PNTLRVLRYNLFLILYPIGFVSEMYCLR--ALYNAAGKIFSL 166
>gnl|CDD|166479 PLN02838, PLN02838, 3-hydroxyacyl-CoA dehydratase subunit of
elongase.
Length = 221
Score = 94.5 bits (235), Expect = 4e-24
Identities = 53/176 (30%), Positives = 100/176 (56%), Gaps = 2/176 (1%)
Query: 19 LVKIYLLAYNFGQVIGWSYLLLQIIGHYLSINKTTSLWDTVQWTVIIFQNAALIEVVNVA 78
L ++YL YN+ IGW+ +L + + +++ V+ + + Q AA++E+++
Sbjct: 8 LRRLYLTVYNWVVFIGWAQVLYLAVTTLKE-SGHEAVYAAVERPLQLAQTAAVLEILHGL 66
Query: 79 LGFVKSNLALTFFQVMSRVMVVVGVLIATPTGPASPGLPLCLLAWTITEIIRYLFYALN- 137
+G V+S ++ T Q+ SR+ + G+L + P + + +++W+ITEIIRY F+ +
Sbjct: 67 VGLVRSPVSATLPQIGSRLFLTWGILWSFPEVRSHILVTSLVISWSITEIIRYSFFGMKE 126
Query: 138 LINAVPDILVWCRYTFFIALYPIGITGELLCIWWAQSYVAETKLWSMELPNALNFT 193
P L+W RY+ F+ LYP GIT E+ I+ A Y+ ++ + + +PN NF+
Sbjct: 127 AFGFAPSWLLWLRYSTFLLLYPTGITSEVGLIYIALPYMKASEKYCLRMPNKWNFS 182
>gnl|CDD|182006 PRK09633, ligD, ATP-dependent DNA ligase; Reviewed.
Length = 610
Score = 37.7 bits (88), Expect = 0.002
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 119 CLLAWTITEIIRYLFYALNLINAVPDILVWCR--YTFFIALYPIGITGELLCI 169
CLL T I L N P+I+ +C + P+ + GEL+C+
Sbjct: 29 CLLIIDETGITLISRNGRELTNTFPEIIEFCESNFEHLKEELPLTLDGELVCL 81
>gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional
non-ribosomal peptide synthetases and related enzymes
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 382
Score = 30.1 bits (68), Expect = 0.70
Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 9/103 (8%)
Query: 90 FFQVMSRVMVVVGVLIATPTGPASP-GLPLCLLAWTITEIIRYLFYALNLINAVPDILVW 148
F + ++ +G+ P S LP+ +A + + A+ + A DI
Sbjct: 211 FLTRLVLGLLQLGIA---PDSEYSLDMLPVDHVARAVVAPSVQVAEAIAALGAHSDI--- 264
Query: 149 CRY-TFFIALYPIGITGELLCIWWAQSYVAETKLWSMELPNAL 190
R+ + +P I + W +A W M L N+
Sbjct: 265 -RFNQLHMLTHPDEIGLDEYVDWLISLDIAGYPEWLMVLDNSA 306
>gnl|CDD|206259 pfam14089, KbaA, KinB-signalling pathway activation in sporulation.
This family of small proteins is found in the membrane
and is necessary for kinase KinB signalling during
sporulation. There is a conserved GFF sequence motif.
The initiation of sporulation in Bacillus subtilis is
dependent on the phosphorylation of the Spo0A
transcription factor mediated by the phospho-relay and
by two major kinases, KinA and KinB.
Length = 180
Score = 27.6 bits (62), Expect = 3.3
Identities = 19/72 (26%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 36 SYLLLQIIGHYLSINKTTSLWDTVQWTVIIFQNAALIEVVNV-ALGFVKSNLALTFFQVM 94
+YL + G L I +++SLW+ VQ +I F L ++V L F + ++ + ++
Sbjct: 53 AYLTIHRFG--LGIFRSSSLWNAVQVVLIAF---VLFDLVYFRYLAFGEEGESIWSYIIL 107
Query: 95 SRVMVVVGVLIA 106
++++VG+++A
Sbjct: 108 PLLLLIVGLIVA 119
>gnl|CDD|233681 TIGR02002, PTS-II-BC-glcB, PTS system, glucose-specific IIBC
component. This model represents the combined B and C
domains of the PTS transport system enzyme II specific
for glucose transport. Many of the genes in this family
also include an A domain as part of the same polypeptide
and thus should be given the name "PTS system,
glucose-specific IIABC component" while the B. subtilus
enzyme also contains an enzyme III domain which appears
to act independently of the enzyme II domains. This
family is most closely related to the
N-acetylglucosamine-specific PTS enzymes (TIGR01998)
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 502
Score = 26.7 bits (59), Expect = 8.9
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 64 IIFQNAALIEVVNVALGFVKSN-----LALTFFQVMSRVMVVV 101
IIF N LI + VALG ++ AL + +M++ M VV
Sbjct: 65 IIFANLPLIFAIGVALGLAGNDGVAGLAALVGYLIMNKTMGVV 107
>gnl|CDD|131081 TIGR02026, BchE, magnesium-protoporphyrin IX monomethyl ester
anaerobic oxidative cyclase. This model respresents the
cobalamin-dependent oxidative cyclase responsible for
forming the distinctive E-ring of the chlorin ring
system under anaerobic conditions. This step is
essential in the biosynthesis of both
bacteriochlorophyll and chlorophyll under anaerobic
conditions (a separate enzyme, AcsF, acts under aerobic
conditions). This model identifies two clades of
sequences, one from photosynthetic, non-cyanobacterial
bacteria and another including Synechocystis and several
non-photosynthetic bacteria. The function of the
Synechocystis gene is supported by gene clustering with
other photosynthetic genes, so the purpose of the gene
in the non-photosynthetic bacteria is uncertain. Note
that homologs of this gene are not found in plants which
rely solely on the aerobic cyclase.
Length = 497
Score = 26.8 bits (59), Expect = 9.2
Identities = 17/79 (21%), Positives = 31/79 (39%)
Query: 74 VVNVALGFVKSNLALTFFQVMSRVMVVVGVLIATPTGPASPGLPLCLLAWTITEIIRYLF 133
VV + N A +V + ++ T P L + W + + +Y++
Sbjct: 128 VVKLIAALENHNFAEDRNKVDGIAFLRDQEIVETLAAPMIQDLDVYRPDWELVDWKKYIY 187
Query: 134 YALNLINAVPDILVWCRYT 152
Y L + AVP+ C +T
Sbjct: 188 YPLGVRVAVPNFARGCPFT 206
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.140 0.449
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,323,231
Number of extensions: 979291
Number of successful extensions: 1026
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1017
Number of HSP's successfully gapped: 44
Length of query: 200
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 108
Effective length of database: 6,857,034
Effective search space: 740559672
Effective search space used: 740559672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.3 bits)