RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15733
         (200 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 31.0 bits (69), Expect = 0.31
 Identities = 17/151 (11%), Positives = 47/151 (31%), Gaps = 37/151 (24%)

Query: 56  WDTVQW--------TVIIFQNAALIEVVNVA----LGFVKSNLALTFFQVMSRVMVVVGV 103
            +   W         ++  +   + + ++ A    +     ++ LT  +V S ++  +  
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 104 LI------ATPTGPASPGLPLCLLAWTITE-IIRYLFYALNLINAVPDILVWC------- 149
                      T P      L ++A +I + +  +  +     + +  I+          
Sbjct: 314 RPQDLPREVLTTNP----RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 150 ----RYTFFIALYP--IGITGELLCIWWAQS 174
                +    +++P    I   LL + W   
Sbjct: 370 EYRKMFDRL-SVFPPSAHIPTILLSLIWFDV 399


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.8 bits (69), Expect = 0.37
 Identities = 49/239 (20%), Positives = 83/239 (34%), Gaps = 89/239 (37%)

Query: 1    MSEKTVKDGKAKSKEPNPLVKIYLLAYNFGQVIGWSYLLLQIIGHYLSINKTTSLWDTVQ 60
            M  +T+ DGK K+++    +  +  +Y F    G   LL          + T       Q
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG---LL----------SAT-------Q 1730

Query: 61   WTVIIFQNAALIEVVNVALGFVKSNLALTFFQVM-SRVMVVVGVLIATPTGPASPGLP-- 117
            +T    Q A  + ++  A            F+ + S+ ++      A        G    
Sbjct: 1731 FT----QPA--LTLMEKAA-----------FEDLKSKGLIPADATFA--------GHSLG 1765

Query: 118  ----LCLLA--WTITEIIRYLFY-ALNLINAVP-DILVWCRYTFFIALYPIGI------- 162
                L  LA   +I  ++  +FY  + +  AVP D L    Y   IA+ P  +       
Sbjct: 1766 EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYG-MIAINPGRVAASFSQE 1824

Query: 163  ------------TGELLCIWWA------QSYVA--ETKLWSME-LPNALNFTKPMGFPL 200
                        TG L+ I         Q YVA  + +  +++ + N LNF K     +
Sbjct: 1825 ALQYVVERVGKRTGWLVEI--VNYNVENQQYVAAGDLR--ALDTVTNVLNFIKLQKIDI 1879


>2oar_A Large-conductance mechanosensitive channel; stretch activated ION
           channel mechanosensitive, membrane protein; 3.50A
           {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
          Length = 174

 Score = 25.9 bits (56), Expect = 8.2
 Identities = 11/87 (12%), Positives = 26/87 (29%), Gaps = 6/87 (6%)

Query: 74  VVNVALGFVKSNLALTFFQVMSRVMVVVGVLIATPTGPASPGLPLCLLAWTITEIIRYLF 133
           +V++A+  V   +   F  +   V      +I              +    I        
Sbjct: 37  IVDLAVAVV---IGTAFTAL---VTKFTDSIITPLINRIGVNAQSDVGILRIGIGGGQTI 90

Query: 134 YALNLINAVPDILVWCRYTFFIALYPI 160
               L++A  +  +     +F+ + P 
Sbjct: 91  DLNVLLSAAINFFLIAFAVYFLVVLPY 117


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.140    0.449 

Gapped
Lambda     K      H
   0.267   0.0541    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,093,700
Number of extensions: 176154
Number of successful extensions: 300
Number of sequences better than 10.0: 1
Number of HSP's gapped: 299
Number of HSP's successfully gapped: 6
Length of query: 200
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 111
Effective length of database: 4,216,824
Effective search space: 468067464
Effective search space used: 468067464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.4 bits)