BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15734
(314 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/284 (20%), Positives = 104/284 (36%), Gaps = 57/284 (20%)
Query: 34 TVGKEALMAC-VVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLR 92
+VG+ C V + ++ ++W K+ +R+S+ +ND S L +
Sbjct: 15 SVGESKFFLCQVAGDAKDKDISWFS-------PNGEKLSPNQQRISVVWNDDDSSTLTIY 67
Query: 93 DVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGY 152
+ D G Y C + T + + V + +++ T +EG + + C V
Sbjct: 68 NANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSS 127
Query: 153 PEPYVAWRREDGKAI------------NY----------------------NGEL----- 173
P + W+ + I NY GE+
Sbjct: 128 LPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDI 187
Query: 174 -----VPPMLTIPNQLEGAFVS--QTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDS 226
VPP + + A + Q+V L C + FP WT + G+ I ++ ++
Sbjct: 188 QVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKD-GEPIENEEEDDEK 246
Query: 227 RLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
+ + S +T IR++ + Y C+A N GE D I + V
Sbjct: 247 HIFSDDSSELT--IRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 26 EPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHR 85
+ + N TA +G+ + C + E ++W T+ I ++ K + F+D
Sbjct: 201 QSIVNATANLGQSVTLVCDADGFPEPTMSW----TKDGEPIENEEEDDEKHI---FSDDS 253
Query: 86 SWFLHLRDVQETDRGWYMC 104
S L +R+V + D Y+C
Sbjct: 254 SE-LTIRNVDKNDEAEYVC 271
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 19/149 (12%)
Query: 19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQ--NKR 76
P P P+ V A V + A C VE+ + +++W + +K++ + + R
Sbjct: 5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTR----------NKILIKLFDTR 54
Query: 77 VSITFNDHRSWFLHLRDVQETDRGWYMCQINTV--PMTSQKGYLQVVVPPRILLDRTSTD 134
SI N L + V+++D G Y C N G LQV + P+I R +
Sbjct: 55 YSIRENGQ---LLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKI--TRPPIN 109
Query: 135 VVVREGTEVTLECSAVGYPEPYVAWRRED 163
V + EG + L C+ +G P+P V+W + D
Sbjct: 110 VKIIEGLKAVLPCTTMGNPKPSVSWIKGD 138
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 69/181 (38%), Gaps = 55/181 (30%)
Query: 124 PRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRRE-------DGK-AINYNGELVP 175
P I + D +V E T C+ YP+P ++W R D + +I NG+L+
Sbjct: 8 PVITTPLETVDALVEE--VATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLT 65
Query: 176 PMLTIPNQLEGAF-------VSQTVE-----------------------------LHCHT 199
+L++ + +G + V VE L C T
Sbjct: 66 -ILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTT 124
Query: 200 EAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNAL 259
P W KGD + E+SR+ S +L+I ++ G YRCVA N+L
Sbjct: 125 MGNPKPSVSWI--KGDSAL----RENSRIAVLES--GSLRIHNVQKEDAGQYRCVAKNSL 176
Query: 260 G 260
G
Sbjct: 177 G 177
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 9/96 (9%)
Query: 176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCH 235
P++T P + A V + C E++P WT K ++I D S NG
Sbjct: 8 PVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNK--ILIKLFDTRYSIRENG---- 61
Query: 236 MTLKIRSILSHQFGSYRCVAVNALG---ETDGFIKV 268
L I S+ G Y C A N +G E+ G ++V
Sbjct: 62 QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQV 97
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 18/144 (12%)
Query: 21 MPRFAEPVA--NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
MP + P N TA G+E +C E ++W + + K++ +N++
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR---------NGKLIEENEKYI 52
Query: 79 ITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRILLDRTSTDVVV 137
+ ++ L +R++ +D G Y+C+ N ++ +LQV V P I+ + T
Sbjct: 53 LKGSNTE---LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNET---T 106
Query: 138 REGTEVTLECSAVGYPEPYVAWRR 161
E +VTL C A G P P + W+R
Sbjct: 107 YENGQVTLVCDAEGEPIPEITWKR 130
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 69/190 (36%), Gaps = 64/190 (33%)
Query: 124 PRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQ 183
P I + + S + G E+T C A G PEP ++W R NG+L+
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR--------NGKLIE-------- 46
Query: 184 LEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSI 243
NEK I+ G + E L +R+I
Sbjct: 47 --------------------------ENEK--YILKGSNTE-------------LTVRNI 65
Query: 244 LSHQFGSYRCVAVNALGETD--GFIKVYVNLVDGDIFQIRKMSRLHMG--AYLCIASNGV 299
++ G Y C A N GE + F++V+V I Q++ + G +C A
Sbjct: 66 INSDGGPYVCRATNKAGEDEKQAFLQVFVQP---HIIQLKNETTYENGQVTLVCDAEGEP 122
Query: 300 VPSVSHRIMV 309
+P ++ + V
Sbjct: 123 IPEITWKRAV 132
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 109/300 (36%), Gaps = 75/300 (25%)
Query: 23 RFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFN 82
RF ++TA +G L+ C V + W K Q L+ + + RV +
Sbjct: 123 RFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQK--NQQDLN----PIPGDSRVVVL-- 174
Query: 83 DHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLD----------RTS 132
S L + +Q D G Y C P +++ G V RIL D +
Sbjct: 175 --PSGALQISRLQPGDSGVYRCSARN-PASTRTGNEAEV---RILSDPGLHRQLYFLQRP 228
Query: 133 TDVVVREGTEVTLECSAVGYPEPYVAWRR--------------------------EDGKA 166
++V+ EG + LEC GYP P W R +D
Sbjct: 229 SNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSG 288
Query: 167 -----INYNGE----------LVPP-MLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWT 210
+ Y E LVPP L P+ L A+ S +E C P W
Sbjct: 289 TYTCVVTYKNENISASAELTVLVPPWFLNHPSNLY-AYESMDIEFECAVSGKPVPTVNWM 347
Query: 211 NEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
+ GD++I D ++ ++ G + L+I ++ G Y+CVA N G ++ V
Sbjct: 348 -KNGDVVIPSDYFQ---IVGGSN----LRILGVVKSDEGFYQCVAENEAGNAQSSAQLIV 399
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 58/137 (42%), Gaps = 18/137 (13%)
Query: 30 NVTATVGKEALMACVVENLREYKVAWVK--MITQTILSIHHKVVTQNKRVSITFNDHRSW 87
+T + G+ + C VE E + WVK + Q + ++ V Q H
Sbjct: 11 KLTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQ----------HWIG 60
Query: 88 FLHLRDVQETDRGWYMCQINTVPMT--SQKGYLQVVVPPRILLDRTSTDVVVREGTEVTL 145
FL L+ V+ +D G Y CQ+ T SQ +L V P ++ D+ V L
Sbjct: 61 FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVE--PKDLAVPPNAPFQL 118
Query: 146 ECSAVGYPEP--YVAWR 160
C AVG PEP V WR
Sbjct: 119 SCEAVGPPEPVTIVWWR 135
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 99/261 (37%), Gaps = 85/261 (32%)
Query: 21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
M F E V+ G++A + C V + V+W+ H++ VT T
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWL---------YHNEEVT-------T 45
Query: 81 FNDHRSWFL-----HLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV----PPRILLDRT 131
+D+R L + ++ ++D G Y C+ V + + ++V PP I + +
Sbjct: 46 ISDNRFAMLANNNLQILNINKSDEGIYRCE-GRVEARGEIDFRDIIVIVNVPPAISMPQK 104
Query: 132 STDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQ 191
S + G E+T C A G PEP ++W R NG+L+
Sbjct: 105 SFNATAERGEEMTFSCRASGSPEPAISWFR--------NGKLIE---------------- 140
Query: 192 TVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSY 251
NEK I+ G + E L +R+I++ G Y
Sbjct: 141 ------------------ENEK--YILKGSNTE-------------LTVRNIINSDGGPY 167
Query: 252 RCVAVNALGETD--GFIKVYV 270
C A N GE + F++V+V
Sbjct: 168 VCRATNKAGEDEKQAFLQVFV 188
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 17/156 (10%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P F EP+ +V A +G+ + C V+ E ++AW K T+ + +K+ +N S+
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVI 65
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQV---VVPPRILLDRTSTDVVV 137
N V +D G Y C+ N+V + L + +PP R DV
Sbjct: 66 N----------KVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFA--RKLKDVHE 113
Query: 138 REGTEVTLECSAVGYPEPYVAWRREDGKAINYNGEL 173
G V EC G V+W + DG+ + + L
Sbjct: 114 TLGFPVAFECRINGSEPLQVSWYK-DGELLKDDANL 148
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
PRF + +++++ VG+E + +E VAW K ++V ++ + I++
Sbjct: 478 PRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKD--------KGEIVRESDNIWISY 529
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQ 114
+++ + L + + G Y CQI T +
Sbjct: 530 SENIA-TLQFSRAEPANAGKYTCQIKNEAGTQE 561
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 52/143 (36%), Gaps = 12/143 (8%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P F +V +G+ C V K+ W K + ++K+ ++T
Sbjct: 198 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT- 256
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQINTVP-MTSQKGYLQVVVPPRILLDRTSTDVVVREG 140
+ V + D G Y C + V S L V PPR + + +V++
Sbjct: 257 ---------VLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPR-FIKKLEPSRIVKQD 306
Query: 141 TEVTLECSAVGYPEPYVAWRRED 163
EC G PE V W +++
Sbjct: 307 EHTRYECKIGGSPEIKVLWYKDE 329
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 43 CVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWY 102
C + E KV W K T+ + ++ + ++F + + L + ++ D G Y
Sbjct: 313 CKIGGSPEIKVLWYKDETE---------IQESSKFRMSFVESVA-VLEMYNLSVEDSGDY 362
Query: 103 MCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRR 161
C+ N S L+V PP + + V +G +V LEC G P V+W +
Sbjct: 363 TCEAHNAAGSASSSTSLKVKEPP--VFRKKPHPVETLKGADVHLECELQGTPPFQVSWHK 420
Query: 162 E 162
+
Sbjct: 421 D 421
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 98/258 (37%), Gaps = 85/258 (32%)
Query: 24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND 83
F E V+ G++A + C V + V+W+ H++ VT T +D
Sbjct: 101 FREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWL---------YHNEEVT-------TISD 144
Query: 84 HRSWFL-----HLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV----PPRILLDRTSTD 134
+R L + ++ ++D G Y C+ V + + ++V PP I + + S +
Sbjct: 145 NRFAMLANNNLQILNINKSDEGIYRCE-GRVEARGEIDFRDIIVIVNVPPAISMPQKSFN 203
Query: 135 VVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVE 194
G E+T C A G PEP ++W R NG+L+
Sbjct: 204 ATAERGEEMTFSCRASGSPEPAISWFR--------NGKLIE------------------- 236
Query: 195 LHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV 254
NEK I+ G + E L +R+I++ G Y C
Sbjct: 237 ---------------ENEK--YILKGSNTE-------------LTVRNIINSDGGPYVCR 266
Query: 255 AVNALGETD--GFIKVYV 270
A N GE + F++V+V
Sbjct: 267 ATNKAGEDEKQAFLQVFV 284
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 8/119 (6%)
Query: 189 VSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQF 248
V ++ C P S++ W N +G+ II+ ++ L I +
Sbjct: 18 VGESKFFTCTAIGEPESID-WYNPQGEKIISTQRV----VVQKEGVRSRLTIYNANIEDA 72
Query: 249 GSYRCVAVNALGETDG---FIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVS 304
G YRC A +A G+T +++Y L ++ ++ + +C S+ P+VS
Sbjct: 73 GIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVS 131
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 65 SIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQ-KGYLQVVVP 123
++ + ++++ ++ + R L + V+ + G + C + Q L V VP
Sbjct: 655 TLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVP 714
Query: 124 PRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDG 164
PR +L+ TD +G++ +EC A G+P+P V W++ G
Sbjct: 715 PRWILE--PTDKAFAQGSDAKVECKADGFPKPQVTWKKAVG 753
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 89/256 (34%), Gaps = 53/256 (20%)
Query: 55 WVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQIN-TVPMTS 113
W K I T + V N RV S L ++D D G Y+C +N +V S
Sbjct: 282 WYKFIEGTT---RKQAVVLNDRVK-----QVSGTLIIKDAVVEDSGKYLCVVNNSVGGES 333
Query: 114 QKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYN--- 170
+ L V P +D + V G C G P V+W + DGKAI ++
Sbjct: 334 VETVLTVTAPLSAKIDPPTQ--TVDFGRPAVFTCQYTGNPIKTVSWMK-DGKAIGHSESV 390
Query: 171 ----------------------------------GELVPPMLTIPNQLEGAFVSQTVELH 196
G PP++ Q E +V L
Sbjct: 391 LRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLK 450
Query: 197 CHTEAFPASLNYWTNEKGDMIITGDDYEDSRLI--NGYSCHMTLKIRSILSHQFGSYRCV 254
C P W + G I D Y+ + + NG L I S+ ++ G Y+C+
Sbjct: 451 CVAGGNPTPEISWELD-GKKIANNDRYQVGQYVTVNGDVVSY-LNITSVHANDGGLYKCI 508
Query: 255 AVNALGETDGFIKVYV 270
A + +G + K+ V
Sbjct: 509 AKSKVGVAEHSAKLNV 524
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 53/156 (33%), Gaps = 18/156 (11%)
Query: 20 DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSI 79
D P + T G + CV +++W + K + N R +
Sbjct: 428 DPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISW---------ELDGKKIANNDRYQV 478
Query: 80 ----TFNDHRSWFLHLRDVQETDRGWYMCQINT-VPMTSQKGYLQVVVPPRILLDRTSTD 134
T N +L++ V D G Y C + V + L V P I R
Sbjct: 479 GQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYI---RQMEK 535
Query: 135 VVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYN 170
+ G + + C GYP + W R D +A+ N
Sbjct: 536 KAIVAGETLIVTCPVAGYPIDSIVWER-DNRALPIN 570
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 22 PRF-AEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
PR+ EP A G +A + C + + +V W K + T + N RV
Sbjct: 715 PRWILEPTDKAFAQ-GSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRV--- 770
Query: 81 FNDHRSWFLHLRDVQETDRGWYMCQ 105
LH+ ++Q+T+ G+Y+C+
Sbjct: 771 ----EEGTLHVDNIQKTNEGYYLCE 791
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 38/106 (35%), Gaps = 19/106 (17%)
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGT 141
N+ W + V G N P QKG + L + + T
Sbjct: 5 NERLKWLMLFAAVALIACGSQTLAANP-PDADQKG--------PVFLKEPTNRIDFSNST 55
Query: 142 EVTLECSAVGYPEPYVAWRREDGKA---------INYNGELV-PPM 177
+EC A G P P + W R DG A I+ +G+LV PP
Sbjct: 56 GAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPF 101
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 7/133 (5%)
Query: 132 STDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGEL---VPPMLTIPNQLEGAF 188
+T V R G+ +T+E + + R + L VPP + +
Sbjct: 668 TTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFA 727
Query: 189 VSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHM-TLKIRSILSHQ 247
++ C + FP W GD T +Y+D + + TL + +I
Sbjct: 728 QGSDAKVECKADGFPKPQVTWKKAVGD---TPGEYKDLKKSDNIRVEEGTLHVDNIQKTN 784
Query: 248 FGSYRCVAVNALG 260
G Y C A+N +G
Sbjct: 785 EGYYLCEAINGIG 797
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 28/110 (25%)
Query: 80 TFNDHRSWF------LHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTS 132
++ D+R + L++ V+++D G Y C + NTV T+ K V+ PP L+ R
Sbjct: 144 SYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTV--TNHK----VLGPPTPLILRND 197
Query: 133 ---------------TDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
V +GT V LEC A+G P P + WRR DGK I
Sbjct: 198 GVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPI 247
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 8/71 (11%)
Query: 192 TVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSY 251
TV+L C P W G I +R + + L+I + GSY
Sbjct: 222 TVKLECFALGNPVPTILWRRADGKPI--------ARKARRHKSNGILEIPNFQQEDAGSY 273
Query: 252 RCVAVNALGET 262
CVA N+ G+
Sbjct: 274 ECVAENSRGKN 284
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 22/95 (23%)
Query: 89 LHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTS--------------- 132
L++ V+++D G Y C + NTV T+ K V+ PP L+ R
Sbjct: 158 LYIAKVEKSDVGNYTCVVTNTV--TNHK----VLGPPTPLILRNDGVMGEYEPKIEVQFP 211
Query: 133 TDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
V +GT V LEC A+G P P + WRR DGK I
Sbjct: 212 ETVPAEKGTTVKLECFALGNPVPTILWRRADGKPI 246
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 8/71 (11%)
Query: 192 TVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSY 251
TV+L C P W G I +R + + L+I + GSY
Sbjct: 221 TVKLECFALGNPVPTILWRRADGKPI--------ARKARRHKSNGILEIPNFQQEDAGSY 272
Query: 252 RCVAVNALGET 262
CVA N+ G+
Sbjct: 273 ECVAENSRGKN 283
>pdb|4I0K|A Chain A, Crystal Structure Of Murine B7-H3 Extracellular Domain
Length = 222
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 24/160 (15%)
Query: 31 VTATVGKEALMACVVENLREYKVAWVKMI---TQTILSIHHKVVTQNKRVSITFNDHRSW 87
V A V +A + C + +A + +I T T +H T+ + +++ +
Sbjct: 5 VVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHS--FTEGRDQGSAYSNRTAL 62
Query: 88 F----------LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVP---PRILLDRTSTD 134
F L L+ V+ TD G Y C ++ S LQV P P + L+
Sbjct: 63 FPDLLVQGNASLRLQRVRVTDEGSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEPNKD- 121
Query: 135 VVVREGTEVTLECSAV-GYPEPYVAWRREDGKAINYNGEL 173
+R G VT+ CS+ GYPE V W+ DG+ + G +
Sbjct: 122 --LRPGNMVTITCSSYQGYPEAEVFWK--DGQGVPLTGNV 157
>pdb|3M45|A Chain A, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|B Chain B, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|C Chain C, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|D Chain D, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
Length = 108
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 30 NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFL 89
NVT G A++ C V+ + W QT+ K + N R+ + +
Sbjct: 15 NVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDN-RIELVRASWHELSI 73
Query: 90 HLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPP 124
+ DV +D G Y C + T+P+ + K YL V+ P
Sbjct: 74 SVSDVSLSDEGQYTCSLFTMPVKTSKAYLTVLGVP 108
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 91 LRDVQETDRGWYMCQINTVPMTSQKG--YLQVVVPPRILLDRTSTDVVVREGTEVTL--E 146
LR+ + D G Y C+++T P S + L+V+VPP L + + EG +TL
Sbjct: 83 LRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPP---LPSLNPGPALEEGQGLTLAAS 139
Query: 147 CSAVGYPEPYVAWRRE 162
C+A G P P V W E
Sbjct: 140 CTAEGSPAPSVTWDTE 155
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 16/102 (15%)
Query: 71 VTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDR 130
+T +KR F + L++ +V+ +D+G Y C +++ +T K +P + +R
Sbjct: 53 ITMDKR---RFVSQTNGNLYIANVEASDKGNYSCFVSSPSIT--KSVFSKFIPLIPIPER 107
Query: 131 TS----TDVVVR-------EGTEVTLECSAVGYPEPYVAWRR 161
T+ D+VV+ G VTLEC A+G P P + WR+
Sbjct: 108 TTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRK 149
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/128 (19%), Positives = 51/128 (39%), Gaps = 8/128 (6%)
Query: 34 TVGKEALMAC-VVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLR 92
+VG+ C V + ++ ++W K+ +R+S+ +ND S L +
Sbjct: 15 SVGESKFFLCQVAGDAKDKDISWFS-------PNGEKLSPNQQRISVVWNDDDSSTLTIY 67
Query: 93 DVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGY 152
+ D G Y C + T + + V + +++ T +EG + + C V
Sbjct: 68 NANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSS 127
Query: 153 PEPYVAWR 160
P + W+
Sbjct: 128 LPPTIIWK 135
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 84 HRSWFLHLRDVQETDRGWYMCQINTVPMTSQKG-YLQVVVPPRILLDRTSTDVVVREGTE 142
H S LH++DV+ +D G Y C+ + QK YL + P+ + ++T EG
Sbjct: 60 HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTI--YYSWEGNP 117
Query: 143 VTLECSAVGYPEPYVAWRRE 162
+ + C P + WRR+
Sbjct: 118 INISCDVKSNPPASIHWRRD 137
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 139 EGTEVTLECSAVGYPEPYVAWRR 161
E +VTL C A G P P + W+R
Sbjct: 14 ENGQVTLVCDAEGEPIPEITWKR 36
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 6/136 (4%)
Query: 28 VANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSW 87
+ N T + + C E ++ W + + + K + + R+ + H S
Sbjct: 7 LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSL--DGRIEVK-GQHGSS 63
Query: 88 FLHLRDVQETDRGWYMCQINTVPMTSQKG-YLQVVVPPRILLDRTSTDVVVREGTEVTLE 146
LH++DV+ +D G Y C+ + QK YL + P+ + ++T EG + +
Sbjct: 64 SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTI--YYSWEGNPINIS 121
Query: 147 CSAVGYPEPYVAWRRE 162
C P + WRR+
Sbjct: 122 CDVKSNPPASIHWRRD 137
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 68/172 (39%), Gaps = 40/172 (23%)
Query: 140 GTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPN---QLEGAFVSQTVELH 196
G +VTLEC A G P P + WR+ DG +++ P L IP+ + EG +
Sbjct: 221 GQQVTLECFAFGNPVPRIKWRKVDG-SLSPQWTTAEPTLQIPSVSFEDEGTY-------E 272
Query: 197 CHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGS---YRC 253
C E N KG + G R+I LK+ S GS + C
Sbjct: 273 CEAE----------NSKGRDTVQG------RIIVQAQPEW-LKVISDTEADIGSNLRWGC 315
Query: 254 VAVNALGETDGFIK--------VYVNLVDGDIFQIRKMSRLHMGAYLCIASN 297
A T +++ V ++ GD+ + K+S G Y C+A N
Sbjct: 316 AAAGKPRPTVRWLRNGEPLASQNRVEVLAGDL-RFSKLSLEDSGMYQCVAEN 366
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 89 LHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLEC 147
L + V D G Y C+ N+ + +G + V P L + +D G+ + C
Sbjct: 258 LQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWL--KVISDTEADIGSNLRWGC 315
Query: 148 SAVGYPEPYVAWRR 161
+A G P P V W R
Sbjct: 316 AAAGKPRPTVRWLR 329
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 17/128 (13%)
Query: 37 KEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQE 96
+ A M C + ++ W K S + + Q RS L + +E
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQ----------LRSGALQIESSEE 173
Query: 97 TDRGWYMC-QINTVPM---TSQKGYLQVV-VPPRILLDRTSTDVVVREGTEVTLECSAVG 151
TD+G Y C N+ + + Y++V V PR + S +++ G V + C AVG
Sbjct: 174 TDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIM--PGGNVNITCVAVG 231
Query: 152 YPEPYVAW 159
P PYV W
Sbjct: 232 SPMPYVKW 239
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAIN 168
PPR + + D + G + C A G P+P V W ++ GK +N
Sbjct: 6 PPRFI--KEPKDQIGVSGGVASFVCQATGDPKPRVTWNKK-GKKVN 48
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 67/168 (39%), Gaps = 32/168 (19%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
PR E +++ + G+ A + C E + W K +RV
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYK---------------GGERVETDK 54
Query: 82 NDHRS----------WFLHLRDVQET--DRGWYMCQINTV--PMTSQKGYLQVVVPPRIL 127
+D RS +FL + +++ D G Y+C S L+V + R
Sbjct: 55 DDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAIL-RDD 113
Query: 128 LDRTSTDVVVREGTEVTLECSAV-GYPEPYVAWRREDGKAINYNGELV 174
+ +DV+V G +EC G+PEP ++W++ DG ++ E +
Sbjct: 114 FRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKK-DGSPLDDKDERI 160
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 119 QVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAW 159
Q PPRI+ +D++V +G TL C A G P P + W
Sbjct: 5 QEDFPPRIV--EHPSDLIVSKGEPATLNCKAEGRPTPTIEW 43
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 98 DRGWYMCQINTVPMTSQKGYLQV-VVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPY 156
D G Y C+++ QK L++ VV + +VV++G +VT+ C G P P
Sbjct: 281 DEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPN 340
Query: 157 VAW 159
V W
Sbjct: 341 VVW 343
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 120 VVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
V VPP + +++ + VTL C A G+PEP + W + DG+ I
Sbjct: 8 VNVPPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTK-DGEPI 54
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 187 AFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSH 246
A +SQ+V L C + FP WT K I +D E+ N + I+ +
Sbjct: 25 ANLSQSVTLACDADGFPEPTMTWT--KDGEPIEQEDNEEKYSFNYDGSELI--IKKVDKS 80
Query: 247 QFGSYRCVAVNALGETDGFIKVYV 270
Y C+A N GE D I + V
Sbjct: 81 DEAEYICIAENKAGEQDATIHLKV 104
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 98 DRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYV 157
D G Y C + V ++V P I + S + EG + + C +VGYP P
Sbjct: 67 DSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENK--NEGQDAMMYCKSVGYPHPEW 124
Query: 158 AWRREDG 164
WR+++
Sbjct: 125 MWRKKEN 131
>pdb|4FOM|A Chain A, Crystal Structure Of Human Nectin-3 Full Ectodomain
(D1-D3)
Length = 308
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 18/158 (11%)
Query: 22 PRFAEPVANVTATVGKEALMACVVE-NLREYKVAWVKM---ITQTILSIHHK----VVTQ 73
P EP +VTA GK + C++E N +++W K+ +QT+ ++HH V
Sbjct: 2 PIIVEP--HVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTV-AVHHPQYGFSVQG 58
Query: 74 NKRVSITFNDH--RSWFLHLRDVQETDRGWYMCQINTVPMTSQKGY--LQVVVPPRILLD 129
+ + F ++ + L ++ +D G Y+C+ T P+ + + + V+V P + L
Sbjct: 59 EYQGRVLFKNYSLNDATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLI 118
Query: 130 RTSTDVVVREGTE-VTLEC-SAVGYPEPYVAWRREDGK 165
+ D ++ G E V C +A G P ++ W + G+
Sbjct: 119 K-GPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGE 155
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 124 PRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYN 170
PRI+ TD+VV++ TL C G PEP + W + DG+ ++ N
Sbjct: 10 PRII--EHPTDLVVKKNEPATLNCKVEGKPEPTIEWFK-DGEPVSTN 53
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 65/159 (40%), Gaps = 21/159 (13%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVS--I 79
PR E ++ + A + C VE E + W K + V+ N++ S +
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFK---------DGEPVSTNEKKSHRV 60
Query: 80 TFNDHRSWFLH-LRDVQETDRGWYMC-QINTVPMT-SQKGYLQVVVPPRILLDRTSTDVV 136
F D +F ++ +E D G Y C N V S+ LQ+ V R D
Sbjct: 61 QFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAV-LRDDFRVEPKDTR 119
Query: 137 VREGTEVTLECSAV-GYPEPYVAWRR-----EDGKAINY 169
V +G LEC G PEP + W + +D KA+++
Sbjct: 120 VAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSF 158
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 124 PRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYN 170
PRI+ TD+VV++ TL C G PEP + W + DG+ ++ N
Sbjct: 10 PRII--EHPTDLVVKKNEPATLNCKVEGKPEPTIEWFK-DGEPVSTN 53
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 65/159 (40%), Gaps = 21/159 (13%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVS--I 79
PR E ++ + A + C VE E + W K + V+ N++ S +
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFK---------DGEPVSTNEKKSHRV 60
Query: 80 TFNDHRSWFLH-LRDVQETDRGWYMC-QINTVPMT-SQKGYLQVVVPPRILLDRTSTDVV 136
F D +F ++ +E D G Y C N V S+ LQ+ V R D
Sbjct: 61 QFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAV-LRDDFRVEPKDTR 119
Query: 137 VREGTEVTLECSAV-GYPEPYVAWRR-----EDGKAINY 169
V +G LEC G PEP + W + +D KA+++
Sbjct: 120 VAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSF 158
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 17/141 (12%)
Query: 22 PRFAEPVANVTATV---GKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
P F P ++ + G + L+ C+ + +AW K + S K NK +
Sbjct: 220 PSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKK-GGDLPSDKAKFENFNKALR 278
Query: 79 ITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVR 138
IT +V E D G Y C + + M S + + V V ++++
Sbjct: 279 IT------------NVSEEDSGEYFC-LASNKMGSIRHTISVRVKAAPYWLDEPKNLILA 325
Query: 139 EGTEVTLECSAVGYPEPYVAW 159
G + L C A G P+P V W
Sbjct: 326 PGEDGRLVCRANGNPKPTVQW 346
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 42/195 (21%)
Query: 64 LSIHHKVVTQNKRVSITFN-DHRSWFLHLRDVQETDRGWYMCQIN---TVPMTSQKGYLQ 119
+S + +TQ+KRVS N D + L+D+Q TD Y C T + + +
Sbjct: 152 MSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQ-TD---YSCNARFHFTHTIQQKNPFTL 207
Query: 120 VVVPPRILLDRT----------STDVVVREGTEVTLECSAVGYPEPYVAWRREDG----- 164
V+ R + +RT S+ +V+R G ++ LEC A G P P +AW ++ G
Sbjct: 208 KVLTTRGVAERTPSFMYPQGTASSQMVLR-GMDLLLECIASGVPTPDIAWYKKGGDLPSD 266
Query: 165 --KAINYNGELVPPMLTIPNQLEGAF---VSQTVELHCHT-----EAFPASLNYWTNEKG 214
K N+N L + + + G + S + HT +A P YW +E
Sbjct: 267 KAKFENFNKALR--ITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAP----YWLDEPK 320
Query: 215 DMIITGDDYEDSRLI 229
++I+ ED RL+
Sbjct: 321 NLILAPG--EDGRLV 333
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 96 ETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTD-VVVREGTEVTLECS-AVGYP 153
E G Y C T+ +++ V L + + D VVV+EG +TL+C+ G P
Sbjct: 86 EEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLP 145
Query: 154 EPYVAW 159
P + W
Sbjct: 146 SPVIFW 151
>pdb|1Z9M|A Chain A, Crystal Structure Of Nectin-Like Molecule-1 Protein Domain
1
pdb|1Z9M|B Chain B, Crystal Structure Of Nectin-Like Molecule-1 Protein Domain
1
Length = 145
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 28 VANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSW 87
++ T G ++ C V++ + + W QT L K ++ R+ + +
Sbjct: 45 TSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQT-LYFGEKRALRDNRIQLVTSTPHEL 103
Query: 88 FLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPR 125
+ + +V D G Y C I T+P+ + K + V+ P+
Sbjct: 104 SISISNVALADEGEYTCSIFTMPVRTAKSLVTVLGIPQ 141
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 106 INTVPMTSQKGYLQVVVPPRI----LLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRR 161
IN + ++ +L+ V + +T D+ V EG+ +C GYP+P V W +
Sbjct: 18 INANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFK 77
Query: 162 ED 163
+D
Sbjct: 78 DD 79
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 17 EKPDM-PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNK 75
EKP + P F + + ++ G A C VE + +V W K V +++
Sbjct: 36 EKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFK---------DDNPVKESR 86
Query: 76 RVSITFNDHRSWFLHLRDVQETDRGWYMCQ 105
I +++ + L + +V D Y C+
Sbjct: 87 HFQIDYDEEGNCSLTISEVCGDDDAKYTCK 116
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 88 FLHLRDVQETDRGWYMCQINTVP-MTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLE 146
LH+++V D G Y C+ + + +G + + P L T T+ + G+++
Sbjct: 258 LLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADI--GSDLRWS 315
Query: 147 CSAVGYPEPYVAWRREDGKAI 167
C A G P P V W R DG+ +
Sbjct: 316 CVASGKPRPAVRWLR-DGQPL 335
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 134 DVVVREGTEVTLECSAVGYPEPYVAWRREDG 164
D G VTLEC A G P P + WR+ DG
Sbjct: 216 DTYALTGQMVTLECFAFGNPVPQIKWRKLDG 246
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 52/143 (36%), Gaps = 12/143 (8%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P F +V +G+ C V K+ W K + ++K+ ++T
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT- 64
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQINTVP-MTSQKGYLQVVVPPRILLDRTSTDVVVREG 140
+ V + D G Y C + V S L V PPR + + +V++
Sbjct: 65 ---------VLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAPPR-FIKKLEPSRIVKQD 114
Query: 141 TEVTLECSAVGYPEPYVAWRRED 163
EC G PE V W +++
Sbjct: 115 EHTRYECKIGGSPEIKVLWYKDE 137
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 43 CVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWY 102
C + E KV W K T+ + ++ + ++F + + L + ++ D G Y
Sbjct: 121 CKIGGSPEIKVLWYKDETE---------IQESSKFRMSFVESVA-VLEMYNLSVEDSGDY 170
Query: 103 MCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRR 161
C+ N S L+V PP + + V +G +V LEC G P V+W +
Sbjct: 171 TCEAHNAAGSASSSTSLKVKEPP--VFRKKPHPVETLKGADVHLECELQGTPPFQVSWHK 228
Query: 162 E 162
+
Sbjct: 229 D 229
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 14/134 (10%)
Query: 29 ANVTATVGKEALMACVVENLREY-KVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSW 87
N+T G + C ++ E +V W++ IL + TQ V + ++ W
Sbjct: 10 GNITGARGLTGTLRCQLQVQGEPPEVHWLR--DGQILELADSTQTQ---VPLGEDEQDDW 64
Query: 88 F----LHLRDVQETDRGWYMCQINTVPMT--SQKGYLQVVVPPRILLDRTSTDVVVREGT 141
L + +Q +D G Y C + T SQ GY+ + P L D V T
Sbjct: 65 IVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFL--EEPEDRTVAANT 122
Query: 142 EVTLECSAVGYPEP 155
L C A G PEP
Sbjct: 123 PFNLSCQAQGPPEP 136
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 106 INTVPMTSQKGYLQVVVPPRI----LLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRR 161
IN + ++ +L+ V + +T D+ V EG+ +C GYP+P V W +
Sbjct: 18 INANKVENEDAFLEEVAEEKPHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFK 77
Query: 162 ED 163
+D
Sbjct: 78 DD 79
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 17 EKPDM-PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNK 75
EKP + P F + + ++ G A C VE + +V W K V +++
Sbjct: 36 EKPHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFK---------DDNPVKESR 86
Query: 76 RVSITFNDHRSWFLHLRDVQETDRGWYMCQ 105
I +++ + L + +V D Y C+
Sbjct: 87 HFQIDYDEEGNCSLTISEVCGDDDAKYTCK 116
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 119 QVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAW 159
Q PPRI+ +D++V +G TL C A G P P + W
Sbjct: 5 QEDFPPRIV--EHPSDLIVSKGEPATLNCKAEGRPTPTIEW 43
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 21/154 (13%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVK---MITQTILSIHHKVVTQNKRVS 78
P F +P+ +V G A + +V+W + +I+ + L V
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTL----------PGVQ 55
Query: 79 ITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQV---VVPPRILLDRTSTD 134
I+F+D R+ L + V + + G Y + N + L V PP + S
Sbjct: 56 ISFSDGRAK-LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQS-- 112
Query: 135 VVVREGTEVTLECSAVGYPEPYVAWRREDGKAIN 168
+ VR+G++V L+ G P P V + R DG I
Sbjct: 113 MTVRQGSQVRLQVRVTGIPTPVVKFYR-DGAEIQ 145
>pdb|4F8Q|A Chain A, Crystal Structure Of The Human Btn3a2 Ectodomain
Length = 219
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 25/159 (15%)
Query: 27 PVANVTATVGKEALMAC---VVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND 83
P + A VG++A + C + ++ WV + +++++ R S +
Sbjct: 10 PSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRG 69
Query: 84 HRSWF----------LHLRDVQETDRGWYMCQINTVPMTSQKG--YLQVVVPPRILLDRT 131
S L + +V +D G Y+C Q G Y + +V ++ +
Sbjct: 70 RTSILRDGITAGKAALRIHNVTASDSGKYLCYF-------QDGDFYEKALVELKVAALGS 122
Query: 132 STDVVVR--EGTEVTLECSAVG-YPEPYVAWRREDGKAI 167
+ V V+ E + LEC + G YP+P + W G+ I
Sbjct: 123 NLHVEVKGYEDGGIHLECRSTGWYPQPQIQWSNAKGENI 161
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 21/154 (13%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVK---MITQTILSIHHKVVTQNKRVS 78
P F +P+ +V G A + +V+W + +I+ + L V
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTL----------PGVQ 55
Query: 79 ITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQV---VVPPRILLDRTSTD 134
I+F+D R+ L + V + + G Y + N + L V PP + S
Sbjct: 56 ISFSDGRAK-LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQS-- 112
Query: 135 VVVREGTEVTLECSAVGYPEPYVAWRREDGKAIN 168
+ VR+G++V L+ G P P V + R DG I
Sbjct: 113 MTVRQGSQVRLQVRVTGIPTPVVKFYR-DGAEIQ 145
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 16/148 (10%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P F + + T G A C + ++ W+K KV +Q V I F
Sbjct: 8 PVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKK--------GKKVSSQRFEV-IEF 58
Query: 82 NDHRSWFLHLRDVQ-ETDRGWYMC-QINTVPMTSQKGYLQVVVPPRILLDRTSTDV---- 135
+D L ++ ++ + D Y C N++ + L V+ ++ + D+
Sbjct: 59 DDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQL 118
Query: 136 -VVREGTEVTLECSAVGYPEPYVAWRRE 162
VV +G T+ C+A G P+P ++W ++
Sbjct: 119 KVVEKGRTATMLCAAGGNPDPEISWFKD 146
>pdb|3UEZ|A Chain A, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|3UEZ|B Chain B, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|3UEZ|C Chain C, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|3UEZ|D Chain D, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|A Chain A, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|B Chain B, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|C Chain C, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|D Chain D, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|E Chain E, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|F Chain F, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|M Chain M, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|N Chain N, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|O Chain O, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|P Chain P, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|Q Chain Q, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADF|R Chain R, Crystal Structure Of The Human Colony-Stimulating Factor 1
(Hcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADQ|A Chain A, Crystal Structure Of The Mouse Colony-Stimulating Factor 1
(Mcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADQ|B Chain B, Crystal Structure Of The Mouse Colony-Stimulating Factor 1
(Mcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADQ|C Chain C, Crystal Structure Of The Mouse Colony-Stimulating Factor 1
(Mcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
pdb|4ADQ|D Chain D, Crystal Structure Of The Mouse Colony-Stimulating Factor 1
(Mcsf-1) Cytokine In Complex With The Viral Receptor
Barf1
Length = 208
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 15/146 (10%)
Query: 31 VTATVGKEALMACVVENLR---EYKVAWVKM---ITQTILS-IHHKVVTQNKRVSITFND 83
VTA +G+ + + E +V+W K+ Q ++ +HH V+ F+
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60
Query: 84 HRS---WFLHLRDVQETDRGWYMC--QINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVR 138
HRS +FL + + G Y+C ++ +T Q+ +L VV P + L S
Sbjct: 61 HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQE-HLSVVKP--LTLSVHSERSQFP 117
Query: 139 EGTEVTLECSAVGYPEPYVAWRREDG 164
+ + +T+ C+ +P P+V W +G
Sbjct: 118 DFSVLTVTCTVNAFPHPHVQWLMPEG 143
>pdb|2CH8|A Chain A, Structure Of The Epstein-barr Virus Oncogene Barf1
pdb|2CH8|B Chain B, Structure Of The Epstein-barr Virus Oncogene Barf1
pdb|2CH8|C Chain C, Structure Of The Epstein-barr Virus Oncogene Barf1
pdb|2CH8|D Chain D, Structure Of The Epstein-barr Virus Oncogene Barf1
Length = 201
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 15/146 (10%)
Query: 31 VTATVGKEALMACVVENLR---EYKVAWVKM---ITQTILS-IHHKVVTQNKRVSITFND 83
VTA +G+ + + E +V+W K+ Q ++ +HH V+ F+
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60
Query: 84 HRS---WFLHLRDVQETDRGWYMC--QINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVR 138
HRS +FL + + G Y+C ++ +T Q+ +L VV P + L S
Sbjct: 61 HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQE-HLSVVKP--LTLSVHSERSQFP 117
Query: 139 EGTEVTLECSAVGYPEPYVAWRREDG 164
+ + +T+ C+ +P P+V W +G
Sbjct: 118 DFSVLTVTCTVNAFPHPHVQWLMPEG 143
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 52/143 (36%), Gaps = 12/143 (8%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P F +V +G+ C V K+ W K + ++K+ ++T
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT- 64
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQINTVP-MTSQKGYLQVVVPPRILLDRTSTDVVVREG 140
+ V + D G Y C + V S L V PPR + + +V++
Sbjct: 65 ---------VLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPR-FIKKLEPSRIVKQD 114
Query: 141 TEVTLECSAVGYPEPYVAWRRED 163
EC G PE V W +++
Sbjct: 115 EHTRYECKIGGSPEIKVLWYKDE 137
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 43 CVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWY 102
C + E KV W K T+ + ++ + ++F + + L + ++ D G Y
Sbjct: 121 CKIGGSPEIKVLWYKDETE---------IQESSKFRMSFVESVA-VLEMYNLSVEDSGDY 170
Query: 103 MCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRR 161
C+ N S L+V PP + + V +G +V LEC G P V+W +
Sbjct: 171 TCEAHNAAGSASSSTSLKVKEPP--VFRKKPHPVETLKGADVHLECELQGTPPFQVSWHK 228
Query: 162 E 162
+
Sbjct: 229 D 229
>pdb|4FA8|A Chain A, Multi-Pronged Modulation Of Cytokine Signaling
pdb|4FA8|B Chain B, Multi-Pronged Modulation Of Cytokine Signaling
pdb|4FA8|D Chain D, Multi-Pronged Modulation Of Cytokine Signaling
Length = 203
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 15/146 (10%)
Query: 31 VTATVGKEALMACVVENLR---EYKVAWVKM---ITQTILS-IHHKVVTQNKRVSITFND 83
VTA +G+ + + E +V+W K+ Q ++ +HH V+ F+
Sbjct: 3 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 62
Query: 84 HRS---WFLHLRDVQETDRGWYMC--QINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVR 138
HRS +FL + + G Y+C ++ +T Q+ +L VV P + L S
Sbjct: 63 HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQE-HLSVVKP--LTLSVHSERSQFP 119
Query: 139 EGTEVTLECSAVGYPEPYVAWRREDG 164
+ + +T+ C+ +P P+V W +G
Sbjct: 120 DFSVLTVTCTVNAFPHPHVQWLMPEG 145
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 33.1 bits (74), Expect = 0.21, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 122 VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAW 159
+PP+I + +D+ + EG +T+ C+ G P P V W
Sbjct: 6 IPPKI--EALPSDISIDEGKVLTVACAFTGEPTPEVTW 41
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 33.1 bits (74), Expect = 0.21, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 122 VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAW 159
+PP+I + +D+ + EG +T+ C+ G P P V W
Sbjct: 4 IPPKI--EALPSDISIDEGKVLTVACAFTGEPTPEVTW 39
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Query: 193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYR 252
V + C A+P++ W + ++ +Y + ++ N S L++ + FG+Y
Sbjct: 36 VNITCEVFAYPSATISWF--RDGQLLPSSNYSNIKIYNTPSASY-LEVTPDSENDFGNYN 92
Query: 253 CVAVNALG-ETDGFIKVYVNLVDG-DIFQIRKMSRLHMGAYLCIASNGVVPSVSHR 306
C AVN +G E+ FI V + I Q+ S + + G VP + ++
Sbjct: 93 CTAVNRIGQESLEFILVQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYK 148
>pdb|3MJ6|A Chain A, Crystal Structure Of The Gammadelta T Cell Costimulatory
Receptor Junctional Adhesion Molecule-Like Protein, Jaml
pdb|3MJ7|A Chain A, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
pdb|3MJ9|A Chain A, Crystal Structure Of Jaml In Complex With The Stimulatory
Antibody Hl4e10
Length = 268
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 58/155 (37%), Gaps = 25/155 (16%)
Query: 21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMI--------TQTILSIHHKVVT 72
+P + VG+ LM CVV+ E V V + ++ +L + +
Sbjct: 5 LPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSV 64
Query: 73 -----QNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI--NTVPMTSQKGYLQVVVP-- 123
QN+ + H L L+DVQ+ D G Y C+I M +K V+P
Sbjct: 65 PTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEE 124
Query: 124 PRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVA 158
PR D+ VR G + CS E V
Sbjct: 125 PR--------DLRVRVGDTTQMRCSIQSTEEKRVT 151
>pdb|4F9L|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 20.1 Single Chain Antibody
pdb|4F9L|B Chain B, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 20.1 Single Chain Antibody
pdb|4F9P|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
pdb|4F9P|B Chain B, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
Length = 220
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 25/159 (15%)
Query: 27 PVANVTATVGKEALMAC---VVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND 83
P + A VG++A + C + ++ WV + +++++ R S +
Sbjct: 10 PSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRG 69
Query: 84 HRSWF----------LHLRDVQETDRGWYMCQINTVPMTSQKG--YLQVVVPPRI--LLD 129
S L + +V +D G Y+C Q G Y + +V ++ L
Sbjct: 70 RTSILRDGITAGKAALRIHNVTASDSGKYLCYF-------QDGDFYEKALVELKVAALGS 122
Query: 130 RTSTDVVVREGTEVTLECSAVG-YPEPYVAWRREDGKAI 167
DV + + LEC + G YP+P + W G+ I
Sbjct: 123 DLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENI 161
>pdb|4F80|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain
Length = 226
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 25/159 (15%)
Query: 27 PVANVTATVGKEALMAC---VVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND 83
P + A VG++A + C + ++ WV + +++++ R S +
Sbjct: 10 PSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRG 69
Query: 84 HRSWF----------LHLRDVQETDRGWYMCQINTVPMTSQKG--YLQVVVPPRI--LLD 129
S L + +V +D G Y+C Q G Y + +V ++ L
Sbjct: 70 RTSILRDGITAGKAALRIHNVTASDSGKYLCYF-------QDGDFYEKALVELKVAALGS 122
Query: 130 RTSTDVVVREGTEVTLECSAVG-YPEPYVAWRREDGKAI 167
DV + + LEC + G YP+P + W G+ I
Sbjct: 123 DLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENI 161
>pdb|3QIB|C Chain C, Crystal Structure Of The 2b4 Tcr In Complex With MccI-Ek
pdb|3QJF|A Chain A, Crystal Structure Of The 2b4 Tcr
pdb|3QJF|C Chain C, Crystal Structure Of The 2b4 Tcr
Length = 207
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 73 QNKRVSITFNDHRSWF-LHLRDVQETDRGWYMC 104
+N R+ TFN S+ LH+RD Q D G Y C
Sbjct: 57 ENGRLKSTFNSKESYSTLHIRDAQLEDSGTYFC 89
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 61/148 (41%), Gaps = 16/148 (10%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P F + + T G A C + ++ W+K KV +Q V I F
Sbjct: 7 PVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKK--------GKKVSSQRFEV-IEF 57
Query: 82 NDHRSWFLHLRDVQ-ETDRGWYMC-QINTVPMTSQKGYLQVV----VPPRI-LLDRTSTD 134
+D L ++ ++ + D Y C N++ + L V+ +PP +D
Sbjct: 58 DDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQL 117
Query: 135 VVVREGTEVTLECSAVGYPEPYVAWRRE 162
VV + T+ C+A G P+P ++W ++
Sbjct: 118 KVVEKARTATMLCAAGGNPDPEISWFKD 145
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 10/62 (16%)
Query: 126 ILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKA---------INYNGELV-P 175
+ L + + T +EC A G P P + W R DG A I+ +G+LV P
Sbjct: 5 VFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFP 64
Query: 176 PM 177
P
Sbjct: 65 PF 66
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
Query: 165 KAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYE 224
+ I+ + P ++ P +L V+ T+ L C + FPA W I G +
Sbjct: 205 EPISSSAPRTPALVQKPLEL---MVAHTISLLCPAQGFPAPSFRWYK-----FIEGTTRK 256
Query: 225 DSRLINGYSCHM--TLKIRSILSHQFGSYRCVAVNALG 260
+ ++N + TL I+ + G Y CV N++G
Sbjct: 257 QAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVG 294
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 10/62 (16%)
Query: 126 ILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKA---------INYNGELV-P 175
+ L + + T +EC A G P P + W R DG A I+ +G+LV P
Sbjct: 5 VFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFP 64
Query: 176 PM 177
P
Sbjct: 65 PF 66
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 10/62 (16%)
Query: 126 ILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKA---------INYNGELV-P 175
+ L + + T +EC A G P P + W R DG A I+ +G+LV P
Sbjct: 11 VFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFP 70
Query: 176 PM 177
P
Sbjct: 71 PF 72
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
Query: 165 KAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYE 224
+ I+ + P ++ P +L V+ T+ L C + FPA W I G +
Sbjct: 211 EPISSSAPRTPALVQKPLEL---MVAHTISLLCPAQGFPAPSFRWYK-----FIEGTTRK 262
Query: 225 DSRLINGYSCHM--TLKIRSILSHQFGSYRCVAVNALG 260
+ ++N + TL I+ + G Y CV N++G
Sbjct: 263 QAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVG 300
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 84 HRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV---PPR-ILLDRTSTDVVVRE 139
H+ W L + V +DRG Y C + + ++ Y V+ P R IL +
Sbjct: 69 HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVL 128
Query: 140 GTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVE 194
G++V C +P++ W K + NG V P T + +++S++VE
Sbjct: 129 GSDVEFHCKVYSDAQPHIQWL----KHVEVNGSKVGPDGTPYVTVLKSWISESVE 179
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 16/106 (15%)
Query: 29 ANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWF 88
AN TA +G + C V + + + W+K + ++ V + +T +SW
Sbjct: 122 ANQTAVLGSDVEFHCKVYSDAQPHIQWLKHV-----EVNGSKVGPDGTPYVTV--LKSWI 174
Query: 89 ---------LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPR 125
L L +V E D G Y+C+ ++K + V PR
Sbjct: 175 SESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPR 220
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 13/85 (15%)
Query: 139 EGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCH 198
EG VT C G P+P + W + DGK I+ + TI L+G T LH
Sbjct: 21 EGMPVTFTCRVAGNPKPKIYWFK-DGKQISPKSD----HYTIQRDLDG-----TCSLHTT 70
Query: 199 TEAFPASLNY---WTNEKGDMIITG 220
NY N +G + TG
Sbjct: 71 ASTLDDDGNYTIMAANPQGRVSCTG 95
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 13/87 (14%)
Query: 137 VREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELH 196
+ EG VT C G P+P + W + DGK I+ + TI L+G T LH
Sbjct: 20 IFEGMPVTFTCRVAGNPKPKIYWFK-DGKQISPKSD----HYTIQRDLDG-----TCSLH 69
Query: 197 CHTEAFPASLNY---WTNEKGDMIITG 220
NY N +G + TG
Sbjct: 70 TTASTLDDDGNYTIMAANPQGRISCTG 96
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 63/192 (32%), Gaps = 64/192 (33%)
Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWR---------------------- 160
PP I+ R + VR G + C+A G P P + WR
Sbjct: 6 PPEII--RKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 63
Query: 161 -----------RED-----------GKAIN-------YNGELVPPMLTIPNQLEGAF--- 188
R+D G A++ Y G+ P + Q G
Sbjct: 64 SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIE 123
Query: 189 VSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQF 248
V TV + C P YW + + ++ Y L +G+ L+I +
Sbjct: 124 VGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYS---LKDGF-----LQIENSREEDQ 175
Query: 249 GSYRCVAVNALG 260
G Y CVA N++G
Sbjct: 176 GKYECVAENSMG 187
>pdb|3RNQ|B Chain B, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Pd-L2
Length = 201
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 88 FLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGT-EVTLE 146
H+ VQ D G Y C + K YL V V + R T ++ GT EV L
Sbjct: 67 LFHIPSVQVRDSGQYRCLVICGAAWDYK-YLTVKVKASYM--RIDTRILEVPGTGEVQLT 123
Query: 147 CSAVGYPEPYVAWR 160
C A GYP V+W+
Sbjct: 124 CQARGYPLAEVSWQ 137
>pdb|3BP5|B Chain B, Crystal Structure Of The Mouse Pd-1 And Pd-L2 Complex
pdb|3BP6|B Chain B, Crystal Structure Of The Mouse Pd-1 Mutant And Pd-L2
Complex
Length = 202
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 88 FLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGT-EVTLE 146
H+ VQ D G Y C + K YL V V + R T ++ GT EV L
Sbjct: 68 LFHIPSVQVRDSGQYRCLVICGAAWDYK-YLTVKVKASYM--RIDTRILEVPGTGEVQLT 124
Query: 147 CSAVGYPEPYVAWR 160
C A GYP V+W+
Sbjct: 125 CQARGYPLAEVSWQ 138
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 52/145 (35%), Gaps = 16/145 (11%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
PRF + T G A C K+ W K K V+ + I F
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNK---------KGKKVSNQRFEVIEF 57
Query: 82 NDHRSWFLHLRDVQ-ETDRGWYMC-QINTVPMTSQKGYLQVVVPPRILLDRTSTDV---- 135
+D L ++ ++ D Y C N V S L V+ +I + D+
Sbjct: 58 DDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQL 117
Query: 136 -VVREGTEVTLECSAVGYPEPYVAW 159
VV T+ C+A G P+P + W
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITW 142
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 122 VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELV 174
PPR RT D G + C A G P P + W ++ K N E++
Sbjct: 5 TPPRFT--RTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVI 55
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 63/192 (32%), Gaps = 64/192 (33%)
Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWR---------------------- 160
PP I+ R + VR G + C+A G P P + WR
Sbjct: 8 PPEII--RKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 65
Query: 161 -----------RED-----------GKAIN-------YNGELVPPMLTIPNQLEGAF--- 188
R+D G A++ Y G+ P + Q G
Sbjct: 66 SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIE 125
Query: 189 VSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQF 248
V TV + C P YW + + ++ Y L +G+ L+I +
Sbjct: 126 VGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYS---LKDGF-----LQIENSREEDQ 177
Query: 249 GSYRCVAVNALG 260
G Y CVA N++G
Sbjct: 178 GKYECVAENSMG 189
>pdb|1YPZ|E Chain E, Immune Receptor
pdb|1YPZ|G Chain G, Immune Receptor
Length = 207
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 15/87 (17%)
Query: 73 QNKRVSITFN--DHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDR 130
+N R+ F+ + R LH+RD Q D G Y C +T ++ +GY + D+
Sbjct: 55 ENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAADTWHIS--EGY-------ELGTDK 105
Query: 131 TSTDVVVREGTEVTLECSAVGYPEPYV 157
+V +GT+VT+E + +P V
Sbjct: 106 ----LVFGQGTQVTVEPKSQPPAKPSV 128
>pdb|4H20|H Chain H, Crystal Structure And Computational Modeling Of The Fab
Fragment From The Protective Anti-ricin Monoclonal
Antibody Rac18
Length = 220
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 132 STDVVVREGTEVTLECSAVGY--PEPYVAW-RREDGKAINYNGELVP 175
S V+V+ G V + C A GY + YV W ++ GK++ + G ++P
Sbjct: 7 SGPVLVKPGASVKMSCKASGYTFTDYYVNWVKQSRGKSLEWLGLIIP 53
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 137 VREGTEVTLECSAVGYPEPYVAWRREDGKAINYNG 171
VR + TL C G+P+P V W R+ GK I +G
Sbjct: 14 VRYQSNATLVCKVTGHPKPIVKWYRQ-GKEIIADG 47
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 137 VREGTEVTLECSAVGYPEPYVAWRREDGKAINYNG 171
VR + TL C G+P+P V W R+ GK I +G
Sbjct: 16 VRYQSNATLVCKVTGHPKPIVKWYRQ-GKEIIADG 49
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
Query: 29 ANVTATVGKEALMACVVENLREYKVAWVKMIT---QTILSIHHKVVTQNKRVSITFNDHR 85
AN T +G C V + + + W+K I I + V K + D
Sbjct: 123 ANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKE 182
Query: 86 SWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVV 121
LHLR+V D G Y C N++ ++ +L V+
Sbjct: 183 MEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVL 219
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 26/104 (25%)
Query: 86 SWFLHLRDVQETDRGWYMC-------------QINTVPMTSQKGYLQVVVPPRILLDRTS 132
+W + + V +D+G Y C Q++ V + + LQ +P
Sbjct: 72 TWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLP--------- 122
Query: 133 TDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPP 176
+ V G+ V C P+P++ W K I NG + P
Sbjct: 123 ANKTVALGSNVEFMCKVYSDPQPHIQWL----KHIEVNGSKIGP 162
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 10/84 (11%)
Query: 183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSC---HMTLK 239
+L + TV+ C P W + G +++ I GY H +L
Sbjct: 16 RLHAVPAANTVKFRCPAGGNPMPTMRW-------LKNGKEFKQEHRIGGYKVRNQHWSLI 68
Query: 240 IRSILSHQFGSYRCVAVNALGETD 263
+ S++ G+Y CV N G +
Sbjct: 69 MESVVPSDKGNYTCVVENEYGSIN 92
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
Query: 29 ANVTATVGKEALMACVVENLREYKVAWVKMIT---QTILSIHHKVVTQNKRVSITFNDHR 85
AN T +G C V + + + W+K I I + V K + D
Sbjct: 124 ANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKE 183
Query: 86 SWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVV 121
LHLR+V D G Y C N++ ++ +L V+
Sbjct: 184 MEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVL 220
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 26/104 (25%)
Query: 86 SWFLHLRDVQETDRGWYMC-------------QINTVPMTSQKGYLQVVVPPRILLDRTS 132
+W + + V +D+G Y C Q++ V + + LQ +P
Sbjct: 73 TWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLP--------- 123
Query: 133 TDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPP 176
+ V G+ V C P+P++ W K I NG + P
Sbjct: 124 ANKTVALGSNVEFMCKVYSDPQPHIQWL----KHIEVNGSKIGP 163
>pdb|3BIK|A Chain A, Crystal Structure Of The Pd-1PD-L1 Complex
pdb|3BIS|A Chain A, Crystal Structure Of The Pd-L1
pdb|3BIS|B Chain B, Crystal Structure Of The Pd-L1
Length = 222
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 89 LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECS 148
L + DV+ D G Y C I+ ++ ++V P + R VV +E L C
Sbjct: 82 LQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRIL--VVDPVTSEHELTCQ 139
Query: 149 AVGYPEPYVAWRREDGKAIN 168
A GYP+ V W D + ++
Sbjct: 140 AEGYPKAEVIWTSSDHQVLS 159
>pdb|3FN3|A Chain A, Dimeric Structure Of Pd-L1
pdb|3FN3|B Chain B, Dimeric Structure Of Pd-L1
Length = 221
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 89 LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECS 148
L + DV+ D G Y C I+ ++ ++V P + R VV +E L C
Sbjct: 82 LQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRIL--VVDPVTSEHELTCQ 139
Query: 149 AVGYPEPYVAWRREDGKAIN 168
A GYP+ V W D + ++
Sbjct: 140 AEGYPKAEVIWTSSDHQVLS 159
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
Query: 29 ANVTATVGKEALMACVVENLREYKVAWVKMIT---QTILSIHHKVVTQNKRVSITFNDHR 85
AN T +G C V + + + W+K I I + V K + D
Sbjct: 123 ANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKE 182
Query: 86 SWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVV 121
LHLR+V D G Y C N++ ++ +L V+
Sbjct: 183 MEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVL 219
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 26/104 (25%)
Query: 86 SWFLHLRDVQETDRGWYMC-------------QINTVPMTSQKGYLQVVVPPRILLDRTS 132
+W + + V +D+G Y C Q++ V + + LQ +P
Sbjct: 72 TWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLP--------- 122
Query: 133 TDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPP 176
+ V G+ V C P+P++ W K I NG + P
Sbjct: 123 ANKTVALGSNVEFMCKVYSDPQPHIQWL----KHIEVNGSKIGP 162
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 10/84 (11%)
Query: 183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSC---HMTLK 239
+L + TV+ C P W + G +++ I GY H +L
Sbjct: 20 RLHAVPAANTVKFRCPAGGNPMPTMRW-------LKNGKEFKQEHRIGGYKVRNQHWSLI 72
Query: 240 IRSILSHQFGSYRCVAVNALGETD 263
+ S++ G+Y CV N G +
Sbjct: 73 MESVVPSDKGNYTCVVENEYGSIN 96
>pdb|3SBW|C Chain C, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Human Pd-L1
Length = 222
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 89 LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECS 148
L + DV+ D G Y C I+ ++ ++V P + R VV +E L C
Sbjct: 82 LQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRIL--VVDPVTSEHELTCQ 139
Query: 149 AVGYPEPYVAWRREDGKAIN 168
A GYP+ V W D + ++
Sbjct: 140 AEGYPKAEVIWTSSDHQVLS 159
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 10/84 (11%)
Query: 183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSC---HMTLK 239
+L + TV+ C P W + G +++ I GY H +L
Sbjct: 21 RLHAVPAANTVKFRCPAGGNPMPTMRW-------LKNGKEFKQEHRIGGYKVRNQHWSLI 73
Query: 240 IRSILSHQFGSYRCVAVNALGETD 263
+ S++ G+Y CV N G +
Sbjct: 74 MESVVPSDKGNYTCVVENEYGSIN 97
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 10/84 (11%)
Query: 183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSC---HMTLK 239
+L + TV+ C P W + G +++ I GY H +L
Sbjct: 18 RLHAVPAANTVKFRCPAGGNPMPTMRW-------LKNGKEFKQEHRIGGYKVRNQHWSLI 70
Query: 240 IRSILSHQFGSYRCVAVNALGETD 263
+ S++ G+Y CV N G +
Sbjct: 71 MESVVPSDKGNYTCVVENEYGSIN 94
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 10/84 (11%)
Query: 183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSC---HMTLK 239
+L + TV+ C P W + G +++ I GY H +L
Sbjct: 19 RLHAVPAANTVKFRCPAGGNPMPTMRW-------LKNGKEFKQEHRIGGYKVRNQHWSLI 71
Query: 240 IRSILSHQFGSYRCVAVNALGETD 263
+ S++ G+Y CV N G +
Sbjct: 72 MESVVPSDKGNYTCVVENEYGSIN 95
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 10/84 (11%)
Query: 183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSC---HMTLK 239
+L + TV+ C P W + G +++ I GY H +L
Sbjct: 17 RLHAVPAANTVKFRCPAGGNPMPTMRW-------LKNGKEFKQEHRIGGYKVRNQHWSLI 69
Query: 240 IRSILSHQFGSYRCVAVNALGETD 263
+ S++ G+Y CV N G +
Sbjct: 70 MESVVPSDKGNYTCVVENEYGSIN 93
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 10/84 (11%)
Query: 183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSC---HMTLK 239
+L + TV+ C P W + G +++ I GY H +L
Sbjct: 19 RLHAVPAANTVKFRCPAGGNPMPTMRW-------LKNGKEFKQEHRIGGYKVRNQHWSLI 71
Query: 240 IRSILSHQFGSYRCVAVNALGETD 263
+ S++ G+Y CV N G +
Sbjct: 72 MESVVPSDKGNYTCVVENEYGSIN 95
>pdb|2ZCH|H Chain H, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
Length = 229
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 130 RTSTDVVVREGTEVTLECSAVGY--PEPYVAW-RREDGKAINYNGELVP 175
+ S D +V+ G V L C A GY Y+ W R+ G+ + + G + P
Sbjct: 5 QQSGDDLVKPGASVKLSCKASGYTFTTYYINWMRQRPGQGLEWIGRIAP 53
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
Query: 197 CHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV 256
C P S++ W N +G+ II+ ++ L I + G YRC A
Sbjct: 24 CTAIGEPESID-WYNPQGEKIISTQRV----VVQKEGVRSRLTIYNANIEDAGIYRCQAT 78
Query: 257 NALGETDG---FIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVS 304
+A G+T +++Y L ++ ++ + +C S+ P+VS
Sbjct: 79 DAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVS 129
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 11/91 (12%)
Query: 176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDD----YEDSRLING 231
PM Q + +V+L C A P +W +M+ D Y+D+
Sbjct: 16 PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFW-KRNNEMVQFNTDRISLYQDN----- 69
Query: 232 YSCHMTLKIRSILSHQFGSYRCVAVNALGET 262
+ +TL I+ + G Y AVN G T
Sbjct: 70 -TGRVTLLIKDVNKKDAGWYTVSAVNEAGVT 99
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 137 VREGTEVTLECSAVGYPEPYVAWRREDGKAINYNG 171
VR + TL C G+P+P V W R+ GK I +G
Sbjct: 16 VRYQSNATLVCKVTGHPKPIVKWYRQ-GKEIIADG 49
>pdb|2ZCK|H Chain H, Crystal Structure Of A Ternary Complex Between Psa, A
Substrat-Acyl Intermediate And An Activating Antibody
pdb|2ZCL|H Chain H, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
Length = 230
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 130 RTSTDVVVREGTEVTLECSAVGY--PEPYVAW-RREDGKAINYNGELVP 175
+ S D +V+ G V L C A GY Y+ W R+ G+ + + G + P
Sbjct: 5 QQSGDDLVKPGASVKLSCKASGYTFTTYYINWMRQRPGQGLEWIGRIAP 53
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 10/84 (11%)
Query: 183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSC---HMTLK 239
+L + TV+ C P W + G +++ I GY H +L
Sbjct: 19 RLHAVPAANTVKFRCPAGGNPMPTMRW-------LKNGKEFKQEHRIGGYKVRNQHWSLI 71
Query: 240 IRSILSHQFGSYRCVAVNALGETD 263
+ S++ G+Y CV N G +
Sbjct: 72 MESVVPSDKGNYTCVVENEYGSIN 95
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 84 HRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV---PPR-ILLDRTSTDVVVRE 139
H+ W L + V +DRG Y C + + ++ Y V+ P R IL +
Sbjct: 177 HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVL 236
Query: 140 GTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPP 176
G++V C +P++ W K + NG V P
Sbjct: 237 GSDVEFHCKVYSDAQPHIQWL----KHVEVNGSKVGP 269
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 134 DVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINY 169
D V EG + L+CS G P P + W +G+ I Y
Sbjct: 20 DCAVIEGQDFVLQCSVRGTPVPRITWLL-NGQPIQY 54
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 10/84 (11%)
Query: 183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSC---HMTLK 239
+L + TV+ C P W + G +++ I GY H +L
Sbjct: 19 RLHAVPAANTVKFRCPAGGNPXPTXRW-------LKNGKEFKQEHRIGGYKVRNQHWSLI 71
Query: 240 IRSILSHQFGSYRCVAVNALGETD 263
S++ G+Y CV N G +
Sbjct: 72 XESVVPSDKGNYTCVVENEYGSIN 95
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 10/84 (11%)
Query: 183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSC---HMTLK 239
+L + TV+ C P W + G +++ I GY H +L
Sbjct: 26 RLHAVPAANTVKFRCPAGGNPXPTXRW-------LKNGKEFKQEHRIGGYKVRNQHWSLI 78
Query: 240 IRSILSHQFGSYRCVAVNALGETD 263
S++ G+Y CV N G +
Sbjct: 79 XESVVPSDKGNYTCVVENEYGSIN 102
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 29 ANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT-FNDHRSW 87
AN + VG + C V + + + W+K + + + K + + N +
Sbjct: 125 ANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAE 184
Query: 88 FLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVV 121
L L +V E D G Y+C++ N + +Q +L V+
Sbjct: 185 VLALFNVTEADAGEYICKVSNYIGQANQSAWLTVL 219
>pdb|1H5B|A Chain A, T Cell Receptor Valpha11 (Av11s5) Domain
Length = 113
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 73 QNKRVSITFNDHRSWF--LHLRDVQETDRGWYMC 104
+N R+ F+ R+ + LH+RD Q D G Y C
Sbjct: 55 ENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFC 88
>pdb|1IPJ|A Chain A, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
pdb|1IPJ|B Chain B, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
pdb|1IPJ|C Chain C, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
Length = 416
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 45 VENLREYKVAWVKMITQTILSIHHK-------VVTQNKRVSITFNDHR-SWFLHLRDVQE 96
+ENLR+Y++ + TIL HH V++ +++ ND R S+ LH D Q
Sbjct: 43 LENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQR 102
Query: 97 TDRG--WYMC 104
G +Y+
Sbjct: 103 IPAGTTYYLV 112
>pdb|1IPK|A Chain A, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|B Chain B, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|C Chain C, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
Length = 416
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 45 VENLREYKVAWVKMITQTILSIHHK-------VVTQNKRVSITFNDHR-SWFLHLRDVQE 96
+ENLR+Y++ + TIL HH V++ +++ ND R S+ LH D Q
Sbjct: 43 LENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQR 102
Query: 97 TDRG--WYMC 104
G +Y+
Sbjct: 103 IPAGTTYYLV 112
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 29.6 bits (65), Expect = 2.3, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 134 DVVVREGTEVTLECSAVGYPEPYVAWRR 161
D VREG +V + G P+P V+W R
Sbjct: 14 DQSVREGQDVIMSIRVQGEPKPVVSWLR 41
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 129 DRTSTDVVVREGTEVTLECSAVGYPEPYVAW 159
DR + V V EG V C A G P P + W
Sbjct: 389 DRKAQQVFVDEGHTVQFVCRADGDPPPAILW 419
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 10/84 (11%)
Query: 183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSC---HMTLK 239
+L + TV+ C P W + G +++ I GY H +L
Sbjct: 27 RLHAVPAANTVKFRCPAGGNPMPTMRW-------LKNGKEFKQEHRIGGYKVRNQHWSLI 79
Query: 240 IRSILSHQFGSYRCVAVNALGETD 263
+ S++ G+Y CV N G +
Sbjct: 80 MESVVPSDKGNYTCVVENEYGSIN 103
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 29 ANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT-FNDHRSW 87
AN + VG + C V + + + W+K + + + K + + N +
Sbjct: 126 ANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAE 185
Query: 88 FLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVV 121
L L +V E D G Y+C++ N + +Q +L V+
Sbjct: 186 VLALFNVTEADAGEYICKVSNYIGQANQSAWLTVL 220
>pdb|3MBE|C Chain C, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
pdb|3MBE|G Chain G, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
Length = 229
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 73 QNKRVSITFND-HRSWFLHLRDVQETDRGWYMC 104
+N R+ TFN R LH++D Q D G Y C
Sbjct: 55 ENGRLKSTFNSKERYSTLHIKDAQLEDSGTYFC 87
>pdb|1AFV|H Chain H, Hiv-1 Capsid Protein (P24) Complex With Fab25.3
pdb|1AFV|K Chain K, Hiv-1 Capsid Protein (P24) Complex With Fab25.3
Length = 220
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 134 DVVVREGTEVTLECSAVGY--PEPYVAW-RREDGKAINYNGELVP 175
V+VR G V L C A GY ++ W ++ G+ + + GE+ P
Sbjct: 9 SVLVRPGASVKLSCKASGYTFTSSWIHWAKQRPGQGLEWIGEIHP 53
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 124 PRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRRE 162
P I+L + + +GT + L+C A G P P ++W +E
Sbjct: 8 PPIILQGPANQTLAVDGTAL-LKCKATGDPLPVISWLKE 45
>pdb|2R4R|H Chain H, Crystal Structure Of The Human Beta2 Adrenoceptor
pdb|2R4S|H Chain H, Crystal Structure Of The Human Beta2 Adrenoceptor
pdb|3KJ6|H Chain H, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 217
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 136 VVREGTEVTLECSAVGY--PEPYVAW-RREDGKAINYNGELVP 175
+ R G V L C A GY + Y+ W R+ G+ + GE+ P
Sbjct: 11 LARPGASVKLSCKASGYIFTDYYINWVRQRTGQGFEWIGEIYP 53
>pdb|1UIJ|A Chain A, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|B Chain B, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|C Chain C, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|D Chain D, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|E Chain E, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|F Chain F, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
Length = 416
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 45 VENLREYKVAWVKMITQTILSIHHK-------VVTQNKRVSITFNDHR-SWFLHLRDVQE 96
+ENLR+Y++ + TIL HH V++ +++ ND R S+ LH D Q
Sbjct: 43 LENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQR 102
Query: 97 TDRG--WYMC 104
G +Y+
Sbjct: 103 IPAGTTYYLV 112
>pdb|3TT1|H Chain H, Crystal Structure Of Leut In The Outward-Open Conformation
In Complex With Fab
pdb|3TT1|I Chain I, Crystal Structure Of Leut In The Outward-Open Conformation
In Complex With Fab
Length = 219
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 136 VVREGTEVTLECSAVGY--PEPYVAW-RREDGKAINYNGELVP 175
+ R G V L C A GY + Y+ W ++ G+ + + GE+ P
Sbjct: 11 LARPGASVKLSCKASGYTFTDYYINWMKQRTGQGLEWIGEIYP 53
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 29 ANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT-FNDHRSW 87
AN + VG + C V + + + W+K + + + K + + N +
Sbjct: 126 ANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAE 185
Query: 88 FLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVV 121
L L +V E D G Y+C++ N + +Q +L V+
Sbjct: 186 VLALFNVTEADAGEYICKVSNYIGQANQSAWLTVL 220
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 10/75 (13%)
Query: 192 TVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSC---HMTLKIRSILSHQF 248
TV+ C P W + G +++ I GY H +L + S++
Sbjct: 36 TVKFRCPAGGNPMPTMRW-------LKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 88
Query: 249 GSYRCVAVNALGETD 263
G+Y CV N G +
Sbjct: 89 GNYTCVVENEYGSIN 103
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 134 DVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
D+ V+EG ++C G P P ++W+ DGK +
Sbjct: 18 DLTVQEGKLCRMDCKVSGLPTPDLSWQL-DGKPV 50
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 133 TDVVVREGTEVTLECSAVGYPEPYVAWRREDGKA---INYNGELVPP 176
+DV V E + L C+ G+ P V W+ G + YN ++ P
Sbjct: 9 SDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAP 55
>pdb|1EGJ|H Chain H, Domain 4 Of The Beta Common Chain In Complex With An
Antibody
Length = 220
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 136 VVREGTEVTLECSAVGY--PEPYVAW-RREDGKAINYNGELVP 175
+V+ GT V + C A GY + Y+ W + GK++ + G++ P
Sbjct: 11 LVKPGTSVKMSCKASGYTFTDYYMKWVKHSHGKSLEWIGDINP 53
>pdb|3UJT|H Chain H, Structure Of The Fab Fragment Of Ab-52, An Antibody That
Binds The O- Antigen Of Francisella Tularensis
pdb|3UJT|I Chain I, Structure Of The Fab Fragment Of Ab-52, An Antibody That
Binds The O- Antigen Of Francisella Tularensis
Length = 213
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 134 DVVVREGTEVTLECSAVGY--PEPYVAWRRE-DGKAINYNGELVP 175
V+VR G V L C A GY ++ W ++ G+ + + GE+ P
Sbjct: 9 SVLVRPGASVKLSCKASGYTFTSSWMHWAKQRPGQGLEWIGEIHP 53
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAIN 168
PPR + + D + G + C A G P+P V W ++ GK +N
Sbjct: 6 PPRFI--KEPKDQIGVSGGVASFVCQATGDPKPRVTWNKK-GKKVN 48
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAIN 168
PPR + + D + G + C A G P+P V W ++ GK +N
Sbjct: 6 PPRFI--KEPKDQIGVSGGVASFVCQATGDPKPRVTWNKK-GKKVN 48
>pdb|1IGC|H Chain H, Igg1 Fab Fragment (Mopc21) Complex With Domain Iii Of
Protein G From Streptococcus
Length = 222
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 23/127 (18%)
Query: 45 VENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMC 104
V E + WV I+ ++H+ + + N + FL + ++ D G Y C
Sbjct: 37 VRQAPEKGLEWVAYISSGSSTLHYADTVKGRFTISRDNPKNTLFLQMTSLRSEDTGMYYC 96
Query: 105 ---------------QINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSA 149
Q +V ++S K PP + + + + VTL C
Sbjct: 97 ARWGNYPYYAMDYWGQGTSVTVSSAK-----TTPPSVY--PLAPGSAAQTNSMVTLGCLV 149
Query: 150 VGY-PEP 155
GY PEP
Sbjct: 150 KGYFPEP 156
>pdb|3MJ7|B Chain B, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
Length = 225
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 76 RVSITFNDHRSW--FLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV 122
RV T ND +S +++ ++Q +D G Y C++ P + K +L V+
Sbjct: 73 RVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVL 121
>pdb|3JZ7|A Chain A, Crystal Structure Of The Extracellular Domains Of
Coxsackie & Adenovirus Receptor From Mouse (Mcar)
Length = 214
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 76 RVSITFNDHRSW--FLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV 122
RV T ND +S +++ ++Q +D G Y C++ P + K +L V+
Sbjct: 71 RVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVL 119
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 31/89 (34%)
Query: 98 DRGWYMCQINT----------------VPMTSQKGY-------LQVVVPPRILLDRTSTD 134
D G+Y+C++N +P + Q+ LQ+ V P T
Sbjct: 76 DAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEP--------TS 127
Query: 135 VVVREGTEVTLECSAVGYPEPYVAWRRED 163
+ G+ + L+C AVG P P+ W + +
Sbjct: 128 QKLMPGSTLVLQCVAVGSPIPHYQWFKNE 156
>pdb|1KAC|B Chain B, Knob Domain From Adenovirus Serotype 12 In Complex With
Domain 1 Of Its Cellular Receptor Car
pdb|1P69|B Chain B, Structural Basis For Variation In Adenovirus Affinity For
The Cellular Receptor Car (P417s Mutant)
pdb|1P6A|B Chain B, Structural Basis For Variation In Asdenovirus Affinity For
The Cellular Receptor Car (S489y Mutant)
Length = 124
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 76 RVSITFNDHRSW--FLHLRDVQETDRGWYMCQINTVP-MTSQKGYLQVVVPP 124
RV T ND +S +++ ++Q +D G Y C++ P + ++K +L V+V P
Sbjct: 70 RVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVKP 121
>pdb|1GXE|A Chain A, Central Domain Of Cardiac Myosin Binding Protein C
Length = 139
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 123 PPRILLD---RTSTDVVVREGTEVTLECSAVGYPEPYVAWRR 161
PP+I LD R +VV G ++ L+ G P P V W++
Sbjct: 13 PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQK 54
>pdb|4HPY|L Chain L, Crystal Structure Of Rv144-elicited Antibody Ch59 In
Complex With V2 Peptide
Length = 215
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 191 QTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLING 231
QT + C +A P + YW +K YEDS+ +G
Sbjct: 17 QTARITCSGDALPKNYAYWYQQKSGQAPVLVIYEDSKRPSG 57
>pdb|3OPZ|H Chain H, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
pdb|3OPZ|I Chain I, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
pdb|3OPZ|J Chain J, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
Length = 222
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 136 VVREGTEVTLECSAVGYPEPY--VAW-RREDGKAINYNGEL 173
+VR GT V + C AVGY Y + W ++ G + + G++
Sbjct: 10 LVRPGTSVKMSCKAVGYTFTYDWIGWVKQRPGHGLEWIGDI 50
>pdb|1RSF|A Chain A, Nmr Structure Of Monomeric Car D1 Domain
Length = 126
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 76 RVSITFNDHRSW--FLHLRDVQETDRGWYMCQINTVP-MTSQKGYLQVVVPP 124
RV T ND +S +++ ++Q +D G Y C++ P + ++K +L V+V P
Sbjct: 72 RVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVKP 123
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 89 LHLRDVQETDRGWYMCQINTVPMTSQKG-YLQVVVPPRILLDRTSTDVV-VREGTEVTLE 146
L + V +D+G Y C ++ MT + +++V P + +V G V +
Sbjct: 162 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIP 221
Query: 147 CSAVGYPEPYVAWRR 161
+GYP P + W +
Sbjct: 222 AKYLGYPPPEIKWYK 236
>pdb|3U82|B Chain B, Binding Of Herpes Simplex Virus Glycoprotein D To Nectin-1
Exploits Host Cell Adhesion
Length = 317
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 86/235 (36%), Gaps = 63/235 (26%)
Query: 89 LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV--PPRILLDRTSTDVVVREGTE---- 142
+ L ++ D G Y+C+ T P +++ L + V P ++ T + ++G +
Sbjct: 80 IRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVL 139
Query: 143 VTLECSAVGYPEPYVAWR-REDGKA----------------------------------I 167
V SA G P V+W R G+A +
Sbjct: 140 VATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIV 199
Query: 168 NYNGELVPPMLTIPNQLE---------GAFVSQ--TVELHCHTEAFPASLNY-WTNEKGD 215
NY+ + LT+ Q E G + Q V+L C +A P + Y WT G
Sbjct: 200 NYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGS 259
Query: 216 MIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
+ G + ++ L + +L G+Y C A N +G G ++V +
Sbjct: 260 L-PKGVEAQNRTLFFKGPINYSLA---------GTYICEATNPIGTRSGQVEVNI 304
>pdb|2YPV|H Chain H, Crystal Structure Of The Meningococcal Vaccine Antigen
Factor H Binding Protein In Complex With A Bactericidal
Antibody
Length = 218
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
Query: 136 VVREGTEVTLECSAVGY--PEPYVAW-RREDGKAINYNGELVPPMLTIP-NQLEGAFVSQ 191
+V+ G V + C A GY + ++W ++ +GK++ + G + P TI NQ +
Sbjct: 11 LVKPGASVKISCKASGYSFSDYNMSWVKQSNGKSLEWIGIIDPKYGTINYNQKFKGKATL 70
Query: 192 TVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRS 242
TV+ T LN T+E + DY S + + TL + S
Sbjct: 71 TVDQASSTAYM--QLNSLTSEDSAVYYCVRDYYGSSYFDYWGQGTTLTVSS 119
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 11/116 (9%)
Query: 89 LHLRDVQETDRGWYMCQINTVPMTSQKGY-LQVVVPPRIL-LDRTSTDVVVREGTEVTLE 146
LHL ++ T+ G Y ++ + + + + V P IL DR + L+
Sbjct: 377 LHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGM---------LQ 427
Query: 147 CSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAF 202
C A G+PEP + W G + ++P + N F V+ + AF
Sbjct: 428 CVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAF 483
>pdb|4FMF|A Chain A, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|B Chain B, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|C Chain C, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|D Chain D, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
Length = 313
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 86/235 (36%), Gaps = 63/235 (26%)
Query: 89 LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV--PPRILLDRTSTDVVVREGTE---- 142
+ L ++ D G Y+C+ T P +++ L + V P ++ T + ++G +
Sbjct: 79 IRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVL 138
Query: 143 VTLECSAVGYPEPYVAWR-REDGKA----------------------------------I 167
V SA G P V+W R G+A +
Sbjct: 139 VATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIV 198
Query: 168 NYNGELVPPMLTIPNQLE---------GAFVSQ--TVELHCHTEAFPASLNY-WTNEKGD 215
NY+ + LT+ Q E G + Q V+L C +A P + Y WT G
Sbjct: 199 NYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGS 258
Query: 216 MIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
+ G + ++ L + +L G+Y C A N +G G ++V +
Sbjct: 259 L-PKGVEAQNRTLFFKGPINYSLA---------GTYICEATNPIGTRSGQVEVNI 303
>pdb|3ALP|A Chain A, Cell Adhesion Protein
pdb|3ALP|B Chain B, Cell Adhesion Protein
pdb|3U83|A Chain A, Crystal Structure Of Nectin-1
Length = 331
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 86/235 (36%), Gaps = 63/235 (26%)
Query: 89 LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV--PPRILLDRTSTDVVVREGTE---- 142
+ L ++ D G Y+C+ T P +++ L + V P ++ T + ++G +
Sbjct: 94 IRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVL 153
Query: 143 VTLECSAVGYPEPYVAWR-REDGKA----------------------------------I 167
V SA G P V+W R G+A +
Sbjct: 154 VATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIV 213
Query: 168 NYNGELVPPMLTIPNQLE---------GAFVSQ--TVELHCHTEAFPASLNY-WTNEKGD 215
NY+ + LT+ Q E G + Q V+L C +A P + Y WT G
Sbjct: 214 NYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGS 273
Query: 216 MIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
+ G + ++ L + +L G+Y C A N +G G ++V +
Sbjct: 274 L-PKGVEAQNRTLFFKGPINYSLA---------GTYICEATNPIGTRSGQVEVNI 318
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 11/116 (9%)
Query: 89 LHLRDVQETDRGWYMCQINTVPMTSQKGY-LQVVVPPRIL-LDRTSTDVVVREGTEVTLE 146
LHL ++ T+ G Y ++ + + + + V P IL DR + L+
Sbjct: 352 LHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGM---------LQ 402
Query: 147 CSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAF 202
C A G+PEP + W G + ++P + N F V+ + AF
Sbjct: 403 CVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAF 458
>pdb|1NFD|E Chain E, An Alpha-Beta T Cell Receptor (Tcr) Heterodimer In Complex
With An Anti-Tcr Fab Fragment Derived From A Mitogenic
Antibody
pdb|1NFD|G Chain G, An Alpha-Beta T Cell Receptor (Tcr) Heterodimer In Complex
With An Anti-Tcr Fab Fragment Derived From A Mitogenic
Antibody
Length = 212
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 189 VSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLING 231
V +TV++ C + P + YW +K D I Y D++ +G
Sbjct: 13 VGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSG 55
>pdb|3OJD|A Chain A, Anti-Indolicidin Monoclonal Antibody V2d2 (Fab Fragment)
Length = 214
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 126 ILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDG 164
I++ +T + G VT+ C A G Y+AW ++ G
Sbjct: 2 IVMTQTPASLSASVGESVTITCKASGNIHNYLAWYQQKG 40
>pdb|1K4D|A Chain A, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
pdb|1K4C|A Chain A, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|H Chain H, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|B Chain B, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|B Chain B, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
Tl+
pdb|1R3L|B Chain B, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|1S5H|B Chain B, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
pdb|2BOB|A Chain A, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|A Chain A, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|1ZWI|A Chain A, Structure Of Mutant Kcsa Potassium Channel
pdb|2ATK|A Chain A, Structure Of A Mutant Kcsa K+ Channel
pdb|2H8P|A Chain A, Structure Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
pdb|2HFE|A Chain A, Rb+ Complex Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
pdb|2HG5|A Chain A, Cs+ Complex Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
pdb|2HJF|A Chain A, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium
(Tba)
pdb|2IH1|A Chain A, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2IH3|A Chain A, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2DWD|A Chain A, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|A Chain A, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
pdb|2HVJ|A Chain A, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|A Chain A, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|A Chain A, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|A Chain A, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|2NLJ|B Chain B, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl
pdb|2P7T|A Chain A, Crystal Structure Of Kcsa Mutant
pdb|2JK5|A Chain A, Potassium Channel Kcsa In Complex With Tetrabutylammonium
In High K
pdb|2W0F|A Chain A, Potassium Channel Kcsa-Fab Complex With Tetraoctylammonium
pdb|3GB7|A Chain A, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|A Chain A, Potassium Channel Kcsa-Fab Complex In Li+ And K+
pdb|3F5W|A Chain A, Kcsa Potassium Channel In The Open-Inactivated State With
32 A Opening At T112
pdb|3F7V|A Chain A, Kcsa Potassium Channel In The Open-Inactivated State With
23 A Opening At T112
pdb|3F7Y|A Chain A, Kcsa Potassium Channel In The Partially Open State With 17
A Opening At T112
pdb|3FB5|A Chain A, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|A Chain A, Kcsa Potassium Channel In The Partially Open State With 16
A Opening At T112
pdb|3FB8|A Chain A, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3HPL|A Chain A, Kcsa E71h-F103a Mutant In The Closed State
pdb|3FB7|A Chain A, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
pdb|3OR6|A Chain A, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
pdb|3OR7|A Chain A, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
pdb|3OGC|A Chain A, Kcsa E71a Variant In Presence Of Na+
pdb|3STL|A Chain A, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
pdb|3STZ|A Chain A, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 219
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 136 VVREGTEVTLECSAVGY--PEPYVAW-RREDGKAINYNGELVP 175
+V+ G V L C A GY ++ W ++ G + + GE++P
Sbjct: 11 LVKPGASVKLSCKASGYTFTSDWIHWVKQRPGHGLEWIGEIIP 53
>pdb|1I9R|H Chain H, Structure Of Cd40l In Complex With The Fab Fragment Of
Humanized 5c8 Antibody
pdb|1I9R|K Chain K, Structure Of Cd40l In Complex With The Fab Fragment Of
Humanized 5c8 Antibody
pdb|1I9R|X Chain X, Structure Of Cd40l In Complex With The Fab Fragment Of
Humanized 5c8 Antibody
Length = 219
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 136 VVREGTEVTLECSAVGY--PEPYVAW-RREDGKAINYNGELVP 175
VV+ G V L C A GY Y+ W ++ G+ + + GE+ P
Sbjct: 11 VVKPGASVKLSCKASGYIFTSYYMYWVKQAPGQGLEWIGEINP 53
>pdb|2PCP|B Chain B, Antibody Fab Complexed With Phencyclidine
pdb|2PCP|D Chain D, Antibody Fab Complexed With Phencyclidine
Length = 215
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 136 VVREGTEVTLECSAVGY--PEPYVAWRRED-GKAINYNGELVP 175
+V+ G V + C A GY + Y+ W ++ GK++ + G + P
Sbjct: 11 LVKPGASVKMSCKASGYTFTDYYIHWNKQSHGKSLEWIGYIYP 53
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 135 VVVREGTEVTLECSAVGYPEPYVAWRRED 163
V ++EG + L C+ G P P V+W + +
Sbjct: 127 VTIQEGKALNLTCNVWGDPPPEVSWLKNE 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,794,147
Number of Sequences: 62578
Number of extensions: 399906
Number of successful extensions: 1677
Number of sequences better than 100.0: 140
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 1411
Number of HSP's gapped (non-prelim): 342
length of query: 314
length of database: 14,973,337
effective HSP length: 99
effective length of query: 215
effective length of database: 8,778,115
effective search space: 1887294725
effective search space used: 1887294725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)