Query psy15734
Match_columns 314
No_of_seqs 188 out of 1514
Neff 11.2
Searched_HMMs 46136
Date Fri Aug 16 20:02:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15734.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15734hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 7.3E-33 1.6E-37 247.5 24.8 265 19-307 238-554 (1051)
2 KOG3513|consensus 100.0 2.4E-31 5.1E-36 237.9 27.0 274 20-311 134-513 (1051)
3 KOG4194|consensus 100.0 2E-26 4.3E-31 193.3 20.9 256 12-276 494-801 (873)
4 KOG4221|consensus 99.9 1.2E-25 2.7E-30 201.2 19.6 268 20-310 40-367 (1381)
5 KOG4221|consensus 99.9 2.3E-23 4.9E-28 186.8 21.5 236 13-270 132-415 (1381)
6 KOG4222|consensus 99.9 7.5E-24 1.6E-28 188.8 18.0 228 24-270 134-410 (1281)
7 PHA02785 IL-beta-binding prote 99.9 1.5E-22 3.3E-27 168.0 22.2 213 30-262 35-318 (326)
8 KOG4222|consensus 99.9 1.4E-23 3E-28 187.2 14.7 270 17-307 27-351 (1281)
9 PHA02826 IL-1 receptor-like pr 99.9 2.4E-20 5.3E-25 145.6 17.8 163 28-261 29-213 (227)
10 cd05762 Ig8_MLCK Eighth immuno 99.8 6.1E-19 1.3E-23 119.9 11.6 97 176-277 1-97 (98)
11 KOG4194|consensus 99.8 5.8E-18 1.3E-22 143.0 12.7 169 132-306 510-742 (873)
12 cd05735 Ig8_DSCAM Eight immuno 99.8 9.7E-18 2.1E-22 111.7 10.9 87 190-276 1-87 (88)
13 cd05851 Ig3_Contactin-1 Third 99.7 2.4E-17 5.2E-22 109.9 9.9 88 175-271 1-88 (88)
14 cd04975 Ig4_SCFR_like Fourth i 99.7 7E-17 1.5E-21 109.8 11.9 88 183-271 11-100 (101)
15 cd05894 Ig_C5_MyBP-C C5 immuno 99.7 6E-17 1.3E-21 107.3 10.0 83 184-270 4-86 (86)
16 cd05747 Ig5_Titin_like M5, fif 99.7 2E-16 4.4E-21 106.7 10.5 89 175-268 3-91 (92)
17 cd05892 Ig_Myotilin_C C-termin 99.7 8.9E-17 1.9E-21 103.1 8.2 75 193-270 1-75 (75)
18 cd05865 Ig1_NCAM-1 First immun 99.7 3.5E-16 7.6E-21 105.6 11.5 89 179-270 4-95 (96)
19 cd05773 Ig8_hNephrin_like Eigh 99.7 2.3E-16 5.1E-21 109.4 10.8 100 175-274 4-108 (109)
20 cd05869 Ig5_NCAM-1 Fifth immun 99.7 2.7E-16 5.9E-21 107.1 10.8 93 175-270 2-97 (97)
21 cd05737 Ig_Myomesin_like_C C-t 99.7 3.7E-16 8.1E-21 105.4 11.3 86 181-270 7-92 (92)
22 cd04968 Ig3_Contactin_like Thi 99.7 2.9E-16 6.2E-21 105.1 10.2 87 175-270 1-87 (88)
23 cd05730 Ig3_NCAM-1_like Third 99.7 2.8E-16 6E-21 106.9 9.9 91 175-272 1-94 (95)
24 cd05893 Ig_Palladin_C C-termin 99.7 1.6E-16 3.4E-21 102.1 7.9 75 193-270 1-75 (75)
25 cd05859 Ig4_PDGFR-alpha Fourth 99.7 4.8E-16 1E-20 106.0 10.5 87 184-271 12-100 (101)
26 cd05852 Ig5_Contactin-1 Fifth 99.7 2.8E-16 6.1E-21 100.5 8.5 73 190-270 1-73 (73)
27 PF07679 I-set: Immunoglobulin 99.7 6.9E-16 1.5E-20 104.0 10.8 90 176-270 1-90 (90)
28 cd05866 Ig1_NCAM-2 First immun 99.7 8E-16 1.7E-20 102.7 10.8 87 179-270 4-91 (92)
29 cd05870 Ig5_NCAM-2 Fifth immun 99.7 8.6E-16 1.9E-20 104.9 10.9 91 175-270 2-98 (98)
30 cd04972 Ig_TrkABC_d4 Fourth do 99.7 5.2E-16 1.1E-20 104.3 9.3 87 179-270 4-90 (90)
31 cd05745 Ig3_Peroxidasin Third 99.7 5.2E-16 1.1E-20 100.1 8.5 74 189-270 1-74 (74)
32 cd05732 Ig5_NCAM-1_like Fifth 99.7 1.1E-15 2.4E-20 104.2 10.5 92 175-270 2-96 (96)
33 cd05762 Ig8_MLCK Eighth immuno 99.7 2.7E-15 5.9E-20 102.0 12.0 94 22-125 1-95 (98)
34 cd05867 Ig4_L1-CAM_like Fourth 99.7 1.1E-15 2.4E-20 99.2 9.6 75 190-270 1-75 (76)
35 cd05863 Ig2_VEGFR-3 Second imm 99.7 5.7E-16 1.2E-20 96.6 7.6 66 193-271 1-66 (67)
36 cd05744 Ig_Myotilin_C_like Imm 99.7 9.4E-16 2E-20 98.9 8.6 75 193-270 1-75 (75)
37 cd05728 Ig4_Contactin-2-like F 99.6 1.3E-15 2.8E-20 101.0 9.2 83 179-270 3-85 (85)
38 cd05868 Ig4_NrCAM Fourth immun 99.6 1.8E-15 3.9E-20 97.9 9.1 75 190-270 1-75 (76)
39 cd04977 Ig1_NCAM-1_like First 99.6 7.1E-15 1.5E-19 98.9 11.6 89 178-270 3-92 (92)
40 cd05891 Ig_M-protein_C C-termi 99.6 4.3E-15 9.4E-20 99.9 10.3 86 181-270 7-92 (92)
41 cd04978 Ig4_L1-NrCAM_like Four 99.6 3.4E-15 7.4E-20 97.1 8.9 75 190-270 1-75 (76)
42 cd05748 Ig_Titin_like Immunogl 99.6 4.1E-15 9E-20 96.0 9.2 74 192-270 1-74 (74)
43 cd05758 Ig5_KIRREL3-like Fifth 99.6 8.5E-15 1.8E-19 100.0 11.1 93 175-268 2-97 (98)
44 cd05723 Ig4_Neogenin Fourth im 99.6 4.4E-15 9.6E-20 94.8 8.7 71 192-270 1-71 (71)
45 cd07693 Ig1_Robo First immunog 99.6 1.1E-14 2.3E-19 100.3 11.0 95 175-270 1-99 (100)
46 cd05855 Ig_TrkB_d5 Fifth domai 99.6 6.1E-15 1.3E-19 94.9 9.0 74 195-269 3-77 (79)
47 cd05857 Ig2_FGFR Second immuno 99.6 5.2E-15 1.1E-19 98.4 9.1 82 185-270 4-85 (85)
48 cd04969 Ig5_Contactin_like Fif 99.6 5.1E-15 1.1E-19 95.2 8.7 73 190-270 1-73 (73)
49 cd05764 Ig_2 Subgroup of the i 99.6 6.7E-15 1.4E-19 95.1 9.2 74 190-270 1-74 (74)
50 cd05726 Ig4_Robo Fhird immunog 99.6 9E-15 2E-19 98.2 9.9 79 190-273 1-84 (90)
51 cd05854 Ig6_Contactin-2 Sixth 99.6 1.4E-14 2.9E-19 95.8 10.5 81 191-274 1-85 (85)
52 cd04974 Ig3_FGFR Third immunog 99.6 8.7E-15 1.9E-19 98.1 9.2 81 190-270 1-89 (90)
53 cd05763 Ig_1 Subgroup of the i 99.6 7.2E-15 1.6E-19 95.1 8.1 73 193-270 1-74 (75)
54 cd05858 Ig3_FGFR-2 Third immun 99.6 1.5E-14 3.2E-19 97.1 9.6 81 190-270 1-89 (90)
55 cd05851 Ig3_Contactin-1 Third 99.6 1.9E-14 4.2E-19 95.9 10.1 86 21-120 1-87 (88)
56 cd05876 Ig3_L1-CAM Third immun 99.6 8E-15 1.7E-19 93.6 7.9 70 193-270 1-70 (71)
57 PHA02785 IL-beta-binding prote 99.6 5.8E-14 1.3E-18 116.9 14.6 162 136-307 37-259 (326)
58 cd05853 Ig6_Contactin-4 Sixth 99.6 1.3E-14 2.9E-19 94.7 8.4 79 191-274 1-85 (85)
59 cd04971 Ig_TrKABC_d5 Fifth dom 99.6 2.4E-14 5.3E-19 93.4 9.5 75 194-269 2-79 (81)
60 cd05743 Ig_Perlecan_D2_like Im 99.6 1.5E-14 3.2E-19 94.3 8.5 76 190-270 1-76 (78)
61 cd05849 Ig1_Contactin-1 First 99.6 1.8E-14 3.9E-19 96.8 9.1 86 175-268 1-91 (93)
62 cd04976 Ig2_VEGFR Second immun 99.6 1.1E-14 2.5E-19 92.7 7.7 70 193-271 1-70 (71)
63 cd05760 Ig2_PTK7 Second immuno 99.6 1.5E-14 3.2E-19 93.9 8.2 71 193-270 1-74 (77)
64 cd05725 Ig3_Robo Third immunog 99.6 1.4E-14 3.1E-19 92.1 7.7 69 193-270 1-69 (69)
65 cd05848 Ig1_Contactin-5 First 99.6 4E-14 8.7E-19 95.5 10.2 86 176-268 2-92 (94)
66 cd05898 Ig5_KIRREL3 Fifth immu 99.6 6.9E-14 1.5E-18 93.8 11.0 93 175-268 2-97 (98)
67 cd05850 Ig1_Contactin-2 First 99.6 7.2E-14 1.6E-18 94.4 11.1 86 176-268 2-92 (94)
68 cd04970 Ig6_Contactin_like Six 99.6 2.9E-14 6.3E-19 94.6 8.9 79 191-274 1-85 (85)
69 cd05724 Ig2_Robo Second immuno 99.6 3.5E-14 7.5E-19 94.7 9.2 82 181-269 2-85 (86)
70 cd05864 Ig2_VEGFR-2 Second imm 99.6 1.7E-14 3.7E-19 91.1 7.3 69 193-271 1-69 (70)
71 cd05746 Ig4_Peroxidasin Fourth 99.6 1.5E-14 3.2E-19 91.9 6.9 68 193-268 1-68 (69)
72 cd05740 Ig_CEACAM_D4 Fourth im 99.6 6E-14 1.3E-18 93.9 10.0 86 176-270 2-90 (91)
73 cd05722 Ig1_Neogenin First imm 99.5 5E-14 1.1E-18 95.6 9.6 86 179-270 3-95 (95)
74 cd05747 Ig5_Titin_like M5, fif 99.5 1.4E-13 3E-18 92.8 11.5 86 20-115 2-88 (92)
75 cd05882 Ig1_Necl-1 First (N-te 99.5 1.8E-13 3.9E-18 92.0 11.7 91 28-119 4-94 (95)
76 PF07679 I-set: Immunoglobulin 99.5 8.7E-14 1.9E-18 93.7 10.3 88 22-119 1-89 (90)
77 cd05856 Ig2_FGFRL1-like Second 99.5 3.5E-14 7.5E-19 93.8 7.9 79 185-270 4-82 (82)
78 cd05738 Ig2_RPTP_IIa_LAR_like 99.5 4.8E-14 1E-18 90.8 8.3 72 193-270 1-73 (74)
79 cd05756 Ig1_IL1R_like First im 99.5 3.1E-14 6.6E-19 95.8 7.6 81 184-270 8-94 (94)
80 cd05742 Ig1_VEGFR_like First i 99.5 6.8E-14 1.5E-18 92.6 9.1 81 190-270 1-83 (84)
81 cd05731 Ig3_L1-CAM_like Third 99.5 2.3E-14 5E-19 91.8 6.4 70 193-270 1-70 (71)
82 cd05765 Ig_3 Subgroup of the i 99.5 5E-14 1.1E-18 92.8 8.2 76 190-270 1-81 (81)
83 cd05739 Ig3_RPTP_IIa_LAR_like 99.5 5.9E-14 1.3E-18 88.7 8.2 68 190-268 1-68 (69)
84 cd05737 Ig_Myomesin_like_C C-t 99.5 1.7E-13 3.7E-18 92.4 10.8 83 28-119 8-91 (92)
85 cd04973 Ig1_FGFR First immunog 99.5 8.7E-14 1.9E-18 90.8 8.8 78 183-270 2-79 (79)
86 cd05736 Ig2_Follistatin_like S 99.5 1E-13 2.2E-18 90.0 9.0 74 193-271 1-74 (76)
87 cd05734 Ig7_DSCAM Seventh immu 99.5 7.7E-14 1.7E-18 91.2 8.2 71 193-270 1-79 (79)
88 cd05870 Ig5_NCAM-2 Fifth immun 99.5 3.2E-13 6.9E-18 92.2 11.3 96 21-120 2-98 (98)
89 cd05752 Ig1_FcgammaR_like Frst 99.5 9.8E-14 2.1E-18 89.7 7.8 76 176-269 1-77 (78)
90 cd05865 Ig1_NCAM-1 First immun 99.5 4.7E-13 1E-17 90.3 11.3 88 26-120 5-95 (96)
91 cd07701 Ig1_Necl-3 First (N-te 99.5 6.5E-13 1.4E-17 89.6 11.3 92 28-120 4-95 (95)
92 cd04968 Ig3_Contactin_like Thi 99.5 5.6E-13 1.2E-17 89.1 10.5 86 21-120 1-87 (88)
93 cd05861 Ig1_PDGFR-alphabeta Fr 99.5 7.2E-13 1.6E-17 87.4 10.8 81 190-271 1-83 (84)
94 cd05749 Ig2_Tyro3_like Second 99.5 2.7E-13 5.9E-18 88.2 8.2 77 179-268 2-80 (81)
95 cd05894 Ig_C5_MyBP-C C5 immuno 99.5 9.5E-13 2E-17 87.2 10.8 82 29-119 3-85 (86)
96 cd05866 Ig1_NCAM-2 First immun 99.5 1.3E-12 2.9E-17 87.2 11.3 86 25-120 4-91 (92)
97 cd05728 Ig4_Contactin-2-like F 99.5 4.5E-13 9.7E-18 88.8 9.0 82 24-119 2-84 (85)
98 cd07702 Ig2_VEGFR-1 Second imm 99.5 2.3E-13 5E-18 86.1 7.2 68 193-268 1-68 (72)
99 cd05750 Ig_Pro_neuregulin Immu 99.5 4.3E-13 9.4E-18 86.9 8.4 72 193-267 1-74 (75)
100 cd05891 Ig_M-protein_C C-termi 99.5 9.4E-13 2E-17 88.5 10.3 83 27-118 7-90 (92)
101 cd05869 Ig5_NCAM-1 Fifth immun 99.5 1.2E-12 2.7E-17 89.1 11.0 95 21-120 2-97 (97)
102 cd04975 Ig4_SCFR_like Fourth i 99.5 1.2E-12 2.6E-17 89.1 10.7 85 28-121 10-100 (101)
103 cd05733 Ig6_L1-CAM_like Sixth 99.5 2.6E-13 5.7E-18 88.0 7.1 66 193-264 1-71 (77)
104 cd05852 Ig5_Contactin-1 Fifth 99.5 5.2E-13 1.1E-17 85.4 8.2 71 36-119 1-72 (73)
105 cd05892 Ig_Myotilin_C C-termin 99.5 6.6E-13 1.4E-17 85.1 8.5 74 39-120 1-75 (75)
106 cd04972 Ig_TrkABC_d4 Fourth do 99.5 1.8E-12 3.9E-17 87.0 11.0 86 24-119 3-89 (90)
107 cd05860 Ig4_SCFR Fourth immuno 99.4 2.8E-12 6E-17 85.3 11.5 89 183-271 11-100 (101)
108 cd05881 Ig1_Necl-2 First (N-te 99.4 3E-12 6.5E-17 85.4 11.7 91 28-119 4-94 (95)
109 cd05874 Ig6_NrCAM Sixth immuno 99.4 4.3E-13 9.3E-18 86.8 7.5 70 193-268 1-76 (77)
110 cd05882 Ig1_Necl-1 First (N-te 99.4 1.8E-12 3.8E-17 87.2 10.6 84 182-269 4-94 (95)
111 cd05854 Ig6_Contactin-2 Sixth 99.4 2E-12 4.4E-17 85.4 10.7 82 37-124 1-85 (85)
112 cd05771 IgC_Tapasin_R Tapasin- 99.4 3.7E-12 7.9E-17 92.9 12.8 73 88-162 2-77 (139)
113 cd05745 Ig3_Peroxidasin Third 99.4 7.9E-13 1.7E-17 85.2 8.1 72 35-119 1-73 (74)
114 cd05875 Ig6_hNeurofascin_like 99.4 9.3E-13 2E-17 85.2 8.1 66 193-264 1-71 (77)
115 cd04977 Ig1_NCAM-1_like First 99.4 3.9E-12 8.4E-17 85.5 11.3 85 26-119 5-91 (92)
116 cd05732 Ig5_NCAM-1_like Fifth 99.4 2.3E-12 5E-17 87.8 10.2 93 21-119 2-95 (96)
117 cd05893 Ig_Palladin_C C-termin 99.4 1.1E-12 2.3E-17 84.3 7.9 74 39-120 1-75 (75)
118 cd05730 Ig3_NCAM-1_like Third 99.4 2.8E-12 6.1E-17 87.1 10.4 90 22-122 2-94 (95)
119 cd05735 Ig8_DSCAM Eight immuno 99.4 4.4E-12 9.5E-17 84.4 10.7 82 36-125 1-86 (88)
120 cd05717 Ig1_Necl-1-3_like Firs 99.4 5.3E-12 1.2E-16 85.6 11.3 91 28-119 4-94 (95)
121 cd05853 Ig6_Contactin-4 Sixth 99.4 2.2E-12 4.8E-17 84.3 9.0 82 37-124 1-85 (85)
122 cd04967 Ig1_Contactin First Ig 99.4 3.1E-12 6.6E-17 86.0 9.8 81 176-263 2-86 (91)
123 PHA02826 IL-1 receptor-like pr 99.4 1.8E-12 3.9E-17 101.5 9.8 120 183-307 30-170 (227)
124 cd07701 Ig1_Necl-3 First (N-te 99.4 4.6E-12 1E-16 85.5 9.9 85 182-270 4-95 (95)
125 cd05729 Ig2_FGFR_like Second i 99.4 6.2E-12 1.3E-16 83.6 10.3 82 185-270 4-85 (85)
126 cd05754 Ig3_Perlecan_like Thir 99.4 2.2E-12 4.9E-17 85.6 8.0 78 180-268 6-84 (85)
127 cd05744 Ig_Myotilin_C_like Imm 99.4 4.6E-12 9.9E-17 81.6 9.0 73 39-119 1-74 (75)
128 cd04970 Ig6_Contactin_like Six 99.4 6.7E-12 1.5E-16 83.2 10.1 82 37-124 1-85 (85)
129 cd07693 Ig1_Robo First immunog 99.4 8E-12 1.7E-16 85.8 10.7 95 21-120 1-99 (100)
130 cd05726 Ig4_Robo Fhird immunog 99.4 7.3E-12 1.6E-16 84.0 9.8 83 36-123 1-84 (90)
131 cd04973 Ig1_FGFR First immunog 99.4 7.6E-12 1.7E-16 81.6 9.4 67 28-109 1-67 (79)
132 cd04969 Ig5_Contactin_like Fif 99.4 5.1E-12 1.1E-16 81.2 8.2 71 36-119 1-72 (73)
133 cd05857 Ig2_FGFR Second immuno 99.4 7.4E-12 1.6E-16 83.1 9.2 80 31-119 4-84 (85)
134 cd05859 Ig4_PDGFR-alpha Fourth 99.4 7.2E-12 1.6E-16 85.4 9.1 88 30-121 12-100 (101)
135 cd05867 Ig4_L1-CAM_like Fourth 99.3 7.4E-12 1.6E-16 81.1 8.5 74 36-120 1-75 (76)
136 cd05740 Ig_CEACAM_D4 Fourth im 99.3 2.3E-11 5E-16 81.3 11.1 79 28-120 10-90 (91)
137 cd05723 Ig4_Neogenin Fourth im 99.3 8.9E-12 1.9E-16 79.4 8.7 69 38-119 1-70 (71)
138 cd05862 Ig1_VEGFR First immuno 99.3 1E-11 2.2E-16 82.2 9.0 81 190-271 1-85 (86)
139 cd04979 Ig_Semaphorin_C Immuno 99.3 9.4E-12 2E-16 83.3 8.6 83 182-271 3-87 (89)
140 cd05895 Ig_Pro_neuregulin-1 Im 99.3 6E-12 1.3E-16 81.5 7.4 73 193-267 1-75 (76)
141 cd05773 Ig8_hNephrin_like Eigh 99.3 1.9E-11 4.1E-16 84.8 10.3 97 20-124 3-108 (109)
142 cd05848 Ig1_Contactin-5 First 99.3 2.3E-11 5E-16 82.1 10.3 79 21-111 1-83 (94)
143 cd05748 Ig_Titin_like Immunogl 99.3 1.9E-11 4.2E-16 78.7 9.4 72 38-119 1-73 (74)
144 cd05849 Ig1_Contactin-1 First 99.3 2.5E-11 5.4E-16 81.6 10.2 77 21-110 1-81 (93)
145 cd05752 Ig1_FcgammaR_like Frst 99.3 1.6E-11 3.4E-16 79.4 8.8 76 22-119 1-77 (78)
146 cd05743 Ig_Perlecan_D2_like Im 99.3 1.5E-11 3.2E-16 80.0 8.8 64 36-109 1-64 (78)
147 cd05727 Ig2_Contactin-2-like S 99.3 6.2E-12 1.3E-16 83.7 7.1 76 182-262 10-86 (96)
148 cd05850 Ig1_Contactin-2 First 99.3 4.9E-11 1.1E-15 80.5 11.3 79 21-111 1-83 (94)
149 PHA03376 BARF1; Provisional 99.3 1.3E-10 2.9E-15 84.6 13.8 132 30-164 20-163 (221)
150 cd04974 Ig3_FGFR Third immunog 99.3 9E-12 2E-16 83.4 7.2 79 36-120 1-89 (90)
151 cd05868 Ig4_NrCAM Fourth immun 99.3 1.2E-11 2.6E-16 80.0 7.4 74 36-120 1-75 (76)
152 cd05724 Ig2_Robo Second immuno 99.3 5.3E-11 1.1E-15 79.2 10.8 71 27-109 2-73 (86)
153 cd05858 Ig3_FGFR-2 Third immun 99.3 1.8E-11 3.9E-16 82.0 8.4 83 36-120 1-89 (90)
154 cd05717 Ig1_Necl-1-3_like Firs 99.3 5.5E-11 1.2E-15 80.6 10.7 84 183-270 5-95 (95)
155 cd05863 Ig2_VEGFR-3 Second imm 99.3 2.2E-11 4.8E-16 75.9 7.4 65 39-121 1-66 (67)
156 cd05758 Ig5_KIRREL3-like Fifth 99.3 1.2E-10 2.5E-15 79.5 11.6 89 22-117 2-96 (98)
157 cd05764 Ig_2 Subgroup of the i 99.3 5.7E-11 1.2E-15 76.5 9.5 72 36-119 1-73 (74)
158 cd05753 Ig2_FcgammaR_like Seco 99.3 1.8E-11 3.9E-16 80.4 7.0 74 184-270 8-83 (83)
159 cd05873 Ig_Sema4D_like Immunog 99.3 2.7E-11 5.8E-16 79.5 7.7 70 181-259 2-71 (87)
160 KOG3515|consensus 99.3 1.4E-10 3.1E-15 102.9 14.2 289 19-311 95-442 (741)
161 cd05756 Ig1_IL1R_like First im 99.3 3.2E-11 6.9E-16 81.1 7.9 81 29-119 7-93 (94)
162 cd05757 Ig2_IL1R_like Second i 99.3 3.9E-11 8.5E-16 80.1 8.3 78 185-271 5-87 (92)
163 cd05763 Ig_1 Subgroup of the i 99.3 4.9E-11 1.1E-15 77.0 8.6 73 39-120 1-74 (75)
164 cd05722 Ig1_Neogenin First imm 99.3 1.4E-10 3E-15 78.7 11.2 75 24-109 2-81 (95)
165 cd04978 Ig4_L1-NrCAM_like Four 99.2 3.8E-11 8.3E-16 77.8 7.6 74 36-120 1-75 (76)
166 cd05725 Ig3_Robo Third immunog 99.2 5.8E-11 1.3E-15 75.3 8.2 67 39-119 1-68 (69)
167 cd04976 Ig2_VEGFR Second immun 99.2 3.7E-11 8E-16 76.5 7.1 69 39-121 1-70 (71)
168 cd05856 Ig2_FGFRL1-like Second 99.2 3.2E-11 7E-16 79.5 6.9 78 30-119 3-81 (82)
169 cd05871 Ig_Semaphorin_classIII 99.2 1E-10 2.3E-15 78.1 9.2 78 185-271 6-89 (91)
170 cd05746 Ig4_Peroxidasin Fourth 99.2 4.5E-11 9.8E-16 75.7 7.0 65 39-116 1-66 (69)
171 PF13895 Ig_2: Immunoglobulin 99.2 8.1E-11 1.7E-15 77.1 8.5 78 176-270 2-80 (80)
172 cd05876 Ig3_L1-CAM Third immun 99.2 7.1E-11 1.5E-15 75.3 7.7 69 39-120 1-70 (71)
173 cd05845 Ig2_L1-CAM_like Second 99.2 6.4E-11 1.4E-15 78.7 7.2 73 182-261 10-84 (95)
174 cd04979 Ig_Semaphorin_C Immuno 99.2 1.3E-10 2.9E-15 77.7 8.9 83 27-120 2-86 (89)
175 cd05738 Ig2_RPTP_IIa_LAR_like 99.2 1.2E-10 2.6E-15 74.9 8.3 71 39-120 1-73 (74)
176 cd05864 Ig2_VEGFR-2 Second imm 99.2 5.7E-11 1.2E-15 75.0 6.4 67 39-120 1-68 (70)
177 cd07690 Ig1_CD4 First immunogl 99.2 5.8E-11 1.3E-15 79.3 6.7 76 185-261 2-90 (94)
178 cd05765 Ig_3 Subgroup of the i 99.2 9.2E-11 2E-15 77.1 7.2 77 36-119 1-80 (81)
179 cd05742 Ig1_VEGFR_like First i 99.2 1.3E-10 2.8E-15 76.8 7.7 80 36-120 1-83 (84)
180 cd05739 Ig3_RPTP_IIa_LAR_like 99.2 2.2E-10 4.8E-15 72.3 8.3 58 36-109 1-58 (69)
181 smart00409 IG Immunoglobulin. 99.2 7.4E-10 1.6E-14 73.3 11.3 83 184-270 3-85 (86)
182 smart00410 IG_like Immunoglobu 99.2 7.4E-10 1.6E-14 73.3 11.3 83 184-270 3-85 (86)
183 smart00408 IGc2 Immunoglobulin 99.2 1.5E-10 3.2E-15 71.9 7.4 63 189-260 1-63 (63)
184 cd05760 Ig2_PTK7 Second immuno 99.2 1.7E-10 3.7E-15 74.8 7.7 71 39-120 1-74 (77)
185 cd05749 Ig2_Tyro3_like Second 99.2 3.2E-10 6.9E-15 73.8 8.7 70 24-111 1-71 (81)
186 cd05861 Ig1_PDGFR-alphabeta Fr 99.2 6.6E-10 1.4E-14 73.2 10.3 80 36-121 1-83 (84)
187 cd05855 Ig_TrkB_d5 Fifth domai 99.2 3.1E-10 6.8E-15 73.0 8.4 70 40-118 2-76 (79)
188 cd05873 Ig_Sema4D_like Immunog 99.2 4.5E-10 9.7E-15 73.7 9.2 69 27-109 2-70 (87)
189 KOG3515|consensus 99.1 2.4E-10 5.2E-15 101.5 10.0 255 30-307 16-337 (741)
190 cd05734 Ig7_DSCAM Seventh immu 99.1 3.6E-10 7.9E-15 73.7 8.3 66 39-109 1-66 (79)
191 cd07690 Ig1_CD4 First immunogl 99.1 2.9E-10 6.2E-15 76.0 7.8 79 31-109 2-87 (94)
192 cd04971 Ig_TrKABC_d5 Fifth dom 99.1 4.4E-10 9.6E-15 73.3 8.5 70 40-118 2-78 (81)
193 cd04967 Ig1_Contactin First Ig 99.1 7.9E-10 1.7E-14 74.2 9.9 77 21-109 1-81 (91)
194 cd05729 Ig2_FGFR_like Second i 99.1 1.1E-09 2.4E-14 72.6 10.5 81 30-119 3-84 (85)
195 cd05731 Ig3_L1-CAM_like Third 99.1 3.2E-10 6.9E-15 72.4 7.3 69 39-120 1-70 (71)
196 cd05845 Ig2_L1-CAM_like Second 99.1 6.6E-10 1.4E-14 73.9 8.7 77 22-110 3-82 (95)
197 cd05736 Ig2_Follistatin_like S 99.1 8.1E-10 1.8E-14 71.5 8.8 73 39-121 1-74 (76)
198 cd07702 Ig2_VEGFR-1 Second imm 99.1 5E-10 1.1E-14 70.8 6.8 58 39-109 1-58 (72)
199 cd05881 Ig1_Necl-2 First (N-te 99.1 3.5E-09 7.5E-14 70.7 10.7 74 182-258 4-84 (95)
200 cd05727 Ig2_Contactin-2-like S 99.1 8.4E-10 1.8E-14 73.5 7.7 72 28-109 10-82 (96)
201 cd05871 Ig_Semaphorin_classIII 99.1 3E-09 6.6E-14 71.0 10.3 84 29-121 4-89 (91)
202 cd05885 Ig2_Necl-4 Second immu 99.1 1.1E-09 2.3E-14 70.4 7.7 67 193-262 2-69 (80)
203 cd05754 Ig3_Perlecan_like Thir 99.1 1.3E-09 2.8E-14 72.2 8.3 69 25-109 5-74 (85)
204 cd05759 Ig2_KIRREL3-like Secon 99.1 1.6E-09 3.6E-14 71.1 8.7 75 193-269 2-81 (82)
205 PF13927 Ig_3: Immunoglobulin 99.1 8E-10 1.7E-14 71.3 7.1 74 175-257 1-75 (75)
206 cd04983 IgV_TCR_alpha_like Imm 99.0 3.5E-09 7.5E-14 73.8 10.5 84 26-109 3-92 (109)
207 cd05750 Ig_Pro_neuregulin Immu 99.0 1.6E-09 3.5E-14 69.9 7.9 63 39-109 1-65 (75)
208 PF00047 ig: Immunoglobulin do 99.0 7.8E-10 1.7E-14 69.0 5.8 63 190-255 1-64 (64)
209 cd05753 Ig2_FcgammaR_like Seco 99.0 1.4E-09 2.9E-14 71.5 7.1 62 30-109 8-70 (83)
210 cd05899 IgV_TCR_beta Immunoglo 99.0 3.4E-09 7.5E-14 73.9 9.5 82 26-108 3-93 (110)
211 cd05875 Ig6_hNeurofascin_like 99.0 4.5E-09 9.8E-14 67.9 9.3 64 39-112 1-68 (77)
212 cd05733 Ig6_L1-CAM_like Sixth 99.0 3.1E-09 6.6E-14 68.8 8.3 63 39-111 1-67 (77)
213 cd05897 Ig2_IL1R2_like Second 99.0 2E-09 4.3E-14 71.8 7.0 72 186-263 6-82 (95)
214 cd05898 Ig5_KIRREL3 Fifth immu 99.0 1.5E-08 3.3E-13 68.0 11.2 90 22-118 2-97 (98)
215 PF00047 ig: Immunoglobulin do 99.0 3.7E-09 8.1E-14 65.9 7.7 62 36-106 1-64 (64)
216 cd05874 Ig6_NrCAM Sixth immuno 99.0 7.8E-09 1.7E-13 66.8 9.2 64 39-112 1-68 (77)
217 cd05713 Ig_MOG_like Immunoglob 99.0 1.1E-08 2.4E-13 70.0 10.5 85 36-120 1-99 (100)
218 cd05895 Ig_Pro_neuregulin-1 Im 99.0 4.1E-09 9E-14 68.1 7.9 65 39-109 1-66 (76)
219 cd05896 Ig1_IL1RAPL-1_like Fir 98.9 6E-09 1.3E-13 69.7 8.0 80 185-270 10-104 (104)
220 cd05714 Ig_CSPGs_LP Immunoglob 98.9 1.1E-08 2.3E-13 70.9 9.6 84 189-272 1-104 (106)
221 smart00410 IG_like Immunoglobu 98.9 4E-08 8.6E-13 64.8 12.0 72 29-109 2-73 (86)
222 smart00409 IG Immunoglobulin. 98.9 4E-08 8.6E-13 64.8 12.0 72 29-109 2-73 (86)
223 cd04983 IgV_TCR_alpha_like Imm 98.9 8.3E-09 1.8E-13 71.9 8.8 79 180-260 3-94 (109)
224 cd05757 Ig2_IL1R_like Second i 98.9 9.8E-09 2.1E-13 68.6 8.6 66 30-109 4-74 (92)
225 PF13895 Ig_2: Immunoglobulin 98.9 1.6E-08 3.4E-13 66.1 9.6 67 22-110 2-68 (80)
226 cd05774 Ig_CEACAM_D1 First imm 98.9 2.1E-08 4.5E-13 68.5 10.2 80 27-110 4-93 (105)
227 cd05713 Ig_MOG_like Immunoglob 98.9 1.9E-08 4.2E-13 68.8 10.1 36 235-270 64-99 (100)
228 cd05741 Ig_CEACAM_D1_like Firs 98.9 7.4E-09 1.6E-13 69.7 7.8 74 36-113 1-83 (92)
229 cd05896 Ig1_IL1RAPL-1_like Fir 98.9 8.4E-09 1.8E-13 69.0 7.8 74 29-109 8-92 (104)
230 cd05774 Ig_CEACAM_D1 First imm 98.9 9.6E-09 2.1E-13 70.2 8.2 86 180-270 3-105 (105)
231 cd05775 Ig_SLAM-CD84_like_N N- 98.9 1.1E-08 2.5E-13 69.3 8.5 76 34-112 2-86 (97)
232 cd04982 IgV_TCR_gamma Immunogl 98.9 2.1E-08 4.5E-13 70.7 10.1 83 26-108 3-98 (116)
233 cd05877 Ig_LP_like Immunoglobu 98.9 3.2E-08 7E-13 68.5 10.8 87 35-121 1-103 (106)
234 cd05862 Ig1_VEGFR First immuno 98.9 1.3E-08 2.7E-13 67.4 8.2 82 36-121 1-85 (86)
235 cd05872 Ig_Sema4B_like Immunog 98.9 2.3E-08 4.9E-13 65.2 9.2 71 28-113 3-73 (85)
236 PF07686 V-set: Immunoglobulin 98.9 5.2E-08 1.1E-12 68.4 11.8 84 26-109 6-101 (114)
237 cd05771 IgC_Tapasin_R Tapasin- 98.9 4.4E-09 9.5E-14 76.7 6.3 71 237-307 2-76 (139)
238 cd05714 Ig_CSPGs_LP Immunoglob 98.9 4E-08 8.7E-13 68.0 10.8 88 35-122 1-104 (106)
239 cd05877 Ig_LP_like Immunoglobu 98.9 2E-08 4.4E-13 69.5 9.2 83 189-272 1-104 (106)
240 cd05879 Ig_P0 Immunoglobulin ( 98.9 5.9E-08 1.3E-12 67.7 11.5 82 28-109 5-102 (116)
241 cd00099 IgV Immunoglobulin var 98.9 2.2E-08 4.7E-13 69.3 9.2 80 31-110 1-90 (105)
242 cd05715 Ig_P0-like Immunoglobu 98.9 5.7E-08 1.2E-12 68.4 11.3 83 27-109 4-102 (116)
243 cd05900 Ig_Aggrecan Immunoglob 98.9 9.3E-08 2E-12 66.2 11.7 86 35-120 1-108 (112)
244 cd05900 Ig_Aggrecan Immunoglob 98.9 3.4E-08 7.4E-13 68.3 9.6 84 189-272 1-110 (112)
245 cd05879 Ig_P0 Immunoglobulin ( 98.9 5.3E-08 1.2E-12 67.9 10.6 85 182-266 5-110 (116)
246 cd05718 Ig1_PVR_like First imm 98.8 9.3E-08 2E-12 65.2 11.5 84 37-120 1-97 (98)
247 cd04980 IgV_L_kappa Immunoglob 98.8 2.9E-08 6.4E-13 68.7 9.0 83 25-108 4-92 (106)
248 cd05880 Ig_EVA1 Immunoglobulin 98.8 9.8E-08 2.1E-12 66.9 11.7 84 27-110 4-102 (115)
249 cd05751 Ig1_LILRB1_like First 98.8 3.1E-08 6.7E-13 66.3 8.7 73 176-258 3-75 (91)
250 cd05878 Ig_Aggrecan_like Immun 98.8 9.7E-08 2.1E-12 66.3 11.2 88 35-122 1-108 (110)
251 cd05899 IgV_TCR_beta Immunoglo 98.8 1.6E-08 3.6E-13 70.4 7.3 76 180-259 3-95 (110)
252 cd05878 Ig_Aggrecan_like Immun 98.8 9.8E-08 2.1E-12 66.2 10.9 37 236-272 72-108 (110)
253 cd05846 Ig1_MRC-OX-2_like Firs 98.8 8.2E-08 1.8E-12 65.2 10.3 85 36-120 1-96 (97)
254 smart00408 IGc2 Immunoglobulin 98.8 2.8E-08 6.1E-13 61.4 7.4 61 35-109 1-61 (63)
255 cd05718 Ig1_PVR_like First imm 98.8 5.7E-08 1.2E-12 66.2 9.2 79 191-270 1-97 (98)
256 cd05716 Ig_pIgR Immunoglobulin 98.8 7.4E-08 1.6E-12 65.6 9.5 80 31-110 2-87 (98)
257 cd05860 Ig4_SCFR Fourth immuno 98.8 1.5E-07 3.3E-12 62.8 10.4 85 29-120 11-99 (101)
258 cd05712 Ig_Siglec_N Immunoglob 98.8 8.6E-08 1.9E-12 67.7 9.8 82 27-108 5-101 (119)
259 PHA02987 Ig domain OX-2-like p 98.8 1.7E-07 3.7E-12 69.1 11.4 96 28-124 22-125 (189)
260 cd07706 IgV_TCR_delta Immunogl 98.8 6.3E-08 1.4E-12 68.2 8.9 84 25-108 3-93 (116)
261 cd05775 Ig_SLAM-CD84_like_N N- 98.8 3.5E-08 7.6E-13 66.9 7.2 83 188-270 2-96 (97)
262 cd00098 IgC Immunoglobulin Con 98.8 3.6E-08 7.8E-13 66.8 7.1 73 188-261 11-87 (95)
263 cd05880 Ig_EVA1 Immunoglobulin 98.8 1.4E-07 3.1E-12 66.1 10.1 35 235-269 78-114 (115)
264 cd05883 Ig2_Necl-2 Second immu 98.7 1.9E-07 4.2E-12 60.2 9.6 78 193-272 2-81 (82)
265 cd05888 Ig1_Nectin-4_like Frst 98.7 2.8E-07 6E-12 62.9 11.0 84 37-120 1-99 (100)
266 cd05887 Ig1_Nectin-3_like Firs 98.7 3.8E-07 8.2E-12 61.1 11.4 84 37-120 1-95 (96)
267 cd05741 Ig_CEACAM_D1_like Firs 98.7 8.5E-08 1.8E-12 64.5 8.4 75 190-269 1-91 (92)
268 cd05715 Ig_P0-like Immunoglobu 98.7 1.4E-07 3.1E-12 66.3 9.7 88 182-269 5-115 (116)
269 cd04984 IgV_L_lambda Immunoglo 98.7 7.4E-08 1.6E-12 65.6 8.0 76 32-108 2-84 (98)
270 cd05872 Ig_Sema4B_like Immunog 98.7 7.3E-08 1.6E-12 62.8 7.4 76 183-269 4-79 (85)
271 cd05888 Ig1_Nectin-4_like Frst 98.7 2E-07 4.2E-12 63.6 9.8 35 236-270 64-99 (100)
272 cd05751 Ig1_LILRB1_like First 98.7 1.1E-07 2.4E-12 63.7 8.3 74 21-109 2-75 (91)
273 cd05889 Ig1_DNAM-1_like First 98.7 5.4E-07 1.2E-11 60.4 11.0 85 37-121 1-94 (96)
274 cd05902 Ig_Neurocan Immunoglob 98.7 3.3E-07 7.1E-12 63.2 10.2 38 235-272 71-108 (110)
275 cd04980 IgV_L_kappa Immunoglob 98.7 8.2E-08 1.8E-12 66.4 7.0 77 178-258 3-93 (106)
276 cd05761 Ig2_Necl-1-4_like Seco 98.7 1.6E-07 3.5E-12 61.5 7.8 69 193-262 2-71 (82)
277 cd04982 IgV_TCR_gamma Immunogl 98.7 9.5E-08 2.1E-12 67.3 7.2 77 180-258 3-99 (116)
278 cd05886 Ig1_Nectin-1_like Firs 98.7 5.9E-07 1.3E-11 60.7 10.6 84 37-120 1-98 (99)
279 PHA03376 BARF1; Provisional 98.7 7.3E-07 1.6E-11 65.4 11.4 119 184-306 20-159 (221)
280 cd05886 Ig1_Nectin-1_like Firs 98.7 4.1E-07 8.9E-12 61.5 9.6 35 236-270 63-98 (99)
281 cd05901 Ig_Versican Immunoglob 98.7 1E-06 2.2E-11 60.9 11.6 86 36-121 2-114 (117)
282 cd00099 IgV Immunoglobulin var 98.6 1.6E-07 3.4E-12 65.0 7.5 73 186-260 2-91 (105)
283 cd05901 Ig_Versican Immunoglob 98.6 1.2E-06 2.6E-11 60.6 11.6 38 235-272 78-115 (117)
284 cd05720 Ig_CD8_alpha Immunoglo 98.6 2.3E-07 5E-12 63.8 7.6 75 32-107 2-89 (104)
285 cd07705 Ig2_Necl-1 Second immu 98.6 4.3E-07 9.2E-12 59.5 8.3 68 193-262 2-72 (83)
286 PF07686 V-set: Immunoglobulin 98.6 2.1E-07 4.5E-12 65.3 7.1 81 178-258 4-101 (114)
287 PF08205 C2-set_2: CD80-like C 98.6 5E-07 1.1E-11 60.3 8.3 72 190-261 14-86 (89)
288 cd05902 Ig_Neurocan Immunoglob 98.6 1E-06 2.3E-11 60.7 10.0 87 35-121 1-107 (110)
289 cd05885 Ig2_Necl-4 Second immu 98.6 8.5E-07 1.9E-11 57.0 8.7 64 38-109 1-65 (80)
290 PF13927 Ig_3: Immunoglobulin 98.6 2.2E-07 4.8E-12 59.7 6.2 73 22-108 2-75 (75)
291 cd07700 IgV_CD8_beta Immunoglo 98.6 6.6E-07 1.4E-11 61.9 8.7 77 31-107 1-92 (107)
292 cd07694 Ig2_CD4 Second immunog 98.6 9.4E-07 2E-11 56.8 8.5 75 185-270 9-85 (88)
293 cd05759 Ig2_KIRREL3-like Secon 98.5 1.1E-06 2.5E-11 57.5 9.3 66 38-109 1-68 (82)
294 cd04984 IgV_L_lambda Immunoglo 98.5 3.8E-07 8.2E-12 62.1 6.7 69 186-258 2-85 (98)
295 cd04981 IgV_H Immunoglobulin ( 98.5 1.1E-06 2.3E-11 61.8 9.0 81 27-107 3-96 (117)
296 smart00406 IGv Immunoglobulin 98.5 6.9E-07 1.5E-11 58.4 7.6 69 38-106 1-81 (81)
297 cd07706 IgV_TCR_delta Immunogl 98.5 5.5E-07 1.2E-11 63.4 7.5 78 179-258 3-94 (116)
298 cd05711 Ig_FcalphaRI Immunoglo 98.5 1E-06 2.2E-11 59.3 8.3 74 22-107 2-75 (94)
299 cd05846 Ig1_MRC-OX-2_like Firs 98.5 1.6E-06 3.5E-11 58.8 9.3 35 236-270 61-96 (97)
300 cd05755 Ig2_ICAM-1_like Second 98.5 1.4E-06 3E-11 58.6 8.7 81 178-261 4-87 (100)
301 cd05716 Ig_pIgR Immunoglobulin 98.5 1E-06 2.2E-11 60.0 8.3 73 185-259 2-87 (98)
302 cd07696 IgC_CH3 CH3 domain (th 98.5 1E-06 2.2E-11 59.3 8.0 83 179-261 3-88 (96)
303 cd07698 IgC_MHC_I_alpha3 Class 98.5 2.5E-06 5.5E-11 57.3 10.0 68 190-260 14-84 (93)
304 cd05887 Ig1_Nectin-3_like Firs 98.5 1.5E-06 3.2E-11 58.3 8.5 79 191-270 1-95 (96)
305 cd05884 Ig2_Necl-3 Second immu 98.5 6.6E-07 1.4E-11 58.5 6.7 68 193-261 2-71 (83)
306 cd05711 Ig_FcalphaRI Immunoglo 98.5 1E-06 2.2E-11 59.2 7.4 74 176-256 2-75 (94)
307 cd05897 Ig2_IL1R2_like Second 98.5 1.4E-06 3.1E-11 58.2 7.8 68 31-109 5-77 (95)
308 cd07700 IgV_CD8_beta Immunoglo 98.4 1.5E-06 3.2E-11 60.2 7.1 70 186-257 2-93 (107)
309 PHA02987 Ig domain OX-2-like p 98.4 4.7E-06 1E-10 61.6 9.6 90 183-273 23-124 (189)
310 PHA02914 Immunoglobulin-like d 98.4 0.00096 2.1E-08 55.1 24.2 124 183-310 272-419 (500)
311 cd07699 IgC_L Immunoglobulin C 98.4 2.6E-06 5.6E-11 58.0 7.4 79 181-260 8-90 (100)
312 cd05847 IgC_CH2_IgE CH2 domain 98.3 3.5E-06 7.6E-11 56.4 7.7 82 181-262 5-89 (94)
313 smart00407 IGc1 Immunoglobulin 98.3 4.1E-06 9E-11 53.7 7.6 66 193-259 2-71 (75)
314 cd00096 Ig Immunoglobulin doma 98.3 4.4E-06 9.6E-11 52.5 6.9 66 193-259 1-66 (74)
315 cd05883 Ig2_Necl-2 Second immu 98.2 3E-05 6.4E-10 50.1 10.1 77 38-121 1-80 (82)
316 cd05712 Ig_Siglec_N Immunoglob 98.2 1E-05 2.2E-10 57.1 8.3 78 181-258 5-102 (119)
317 cd05889 Ig1_DNAM-1_like First 98.2 2.4E-05 5.1E-10 52.5 9.5 33 236-268 60-93 (96)
318 cd05772 IgC_SIRP Signal-regula 98.2 2.6E-05 5.6E-10 53.9 9.7 73 186-260 17-93 (111)
319 cd05720 Ig_CD8_alpha Immunoglo 98.2 1.2E-05 2.5E-10 55.3 7.8 23 235-257 68-90 (104)
320 cd05768 IgC_CH4 CH4 domain (fo 98.2 8E-06 1.7E-10 55.7 6.4 80 180-260 6-92 (102)
321 cd05719 Ig2_PVR_like Second im 98.1 2.9E-05 6.3E-10 52.1 8.8 73 189-265 14-88 (95)
322 cd05769 IgC_TCR_beta T cell re 98.1 1.8E-05 3.8E-10 55.0 8.0 86 181-267 9-100 (115)
323 cd05767 IgC_MHC_II_alpha Class 98.1 4.6E-05 9.9E-10 51.0 9.7 68 188-259 13-84 (94)
324 cd07694 Ig2_CD4 Second immunog 98.1 3.8E-05 8.3E-10 49.5 8.6 62 31-108 9-72 (88)
325 cd05721 IgV_CTLA-4 Immunoglobu 98.1 4.7E-05 1E-09 52.1 9.4 81 26-106 3-93 (115)
326 cd04981 IgV_H Immunoglobulin ( 98.1 1.8E-05 3.9E-10 55.6 7.0 74 182-257 4-97 (117)
327 cd05770 IgC_beta2m Class I maj 98.1 7.2E-05 1.6E-09 49.8 9.5 69 187-259 12-83 (93)
328 cd00098 IgC Immunoglobulin Con 98.1 1.9E-05 4.2E-10 53.3 6.9 70 34-110 11-85 (95)
329 PF07654 C1-set: Immunoglobuli 98.1 5.2E-05 1.1E-09 49.7 8.6 70 188-261 6-79 (83)
330 cd05761 Ig2_Necl-1-4_like Seco 98.0 7.4E-05 1.6E-09 48.8 9.1 64 39-109 2-67 (82)
331 cd05755 Ig2_ICAM-1_like Second 98.0 6.5E-05 1.4E-09 50.6 8.7 74 27-109 7-84 (100)
332 cd07697 IgC_TCR_gamma T cell r 98.0 5.5E-05 1.2E-09 50.7 8.3 75 182-259 8-85 (96)
333 cd04986 IgC_CH2 CH2 domain (se 98.0 2.6E-05 5.6E-10 52.3 6.1 80 179-260 8-90 (99)
334 cd07703 Ig2_Nectin-2_like Seco 98.0 5.8E-05 1.3E-09 50.5 7.8 75 191-269 16-92 (95)
335 cd04985 IgC_CH1 CH1 domain (fi 98.0 7.3E-05 1.6E-09 50.1 7.9 69 189-259 15-87 (95)
336 cd05766 IgC_MHC_II_beta Class 97.9 0.00012 2.7E-09 49.0 8.7 71 188-261 12-85 (94)
337 cd07705 Ig2_Necl-1 Second immu 97.9 0.00025 5.4E-09 46.4 9.3 65 39-110 2-69 (83)
338 smart00406 IGv Immunoglobulin 97.9 5.7E-05 1.2E-09 49.1 6.4 64 192-255 1-81 (81)
339 PHA03270 envelope glycoprotein 97.8 0.012 2.6E-07 49.5 20.2 163 88-307 183-356 (466)
340 cd07704 Ig2_Nectin-3-4_like Se 97.8 0.00045 9.7E-09 46.2 9.3 77 183-263 9-88 (97)
341 PHA03269 envelope glycoprotein 97.8 0.0036 7.8E-08 53.3 16.4 165 85-307 287-466 (566)
342 PF08205 C2-set_2: CD80-like C 97.8 0.0005 1.1E-08 45.6 9.5 69 36-110 14-84 (89)
343 cd00096 Ig Immunoglobulin doma 97.7 0.00017 3.6E-09 45.0 6.7 65 39-109 1-65 (74)
344 cd05884 Ig2_Necl-3 Second immu 97.7 0.00043 9.3E-09 45.2 8.4 64 39-109 2-68 (83)
345 cd07698 IgC_MHC_I_alpha3 Class 97.6 0.00054 1.2E-08 45.9 8.1 66 36-110 14-83 (93)
346 cd07691 Ig_CD3_gamma_delta Imm 97.6 0.00029 6.3E-09 43.0 5.8 49 190-257 6-54 (69)
347 cd07692 Ig_CD3_epsilon Immunog 97.6 0.00023 5E-09 43.1 5.3 51 188-257 5-55 (65)
348 PHA02982 hypothetical protein; 97.6 0.0035 7.5E-08 47.2 12.5 121 184-311 33-173 (251)
349 PHA03273 envelope glycoprotein 97.6 0.039 8.5E-07 47.0 20.0 165 87-307 198-374 (486)
350 cd05847 IgC_CH2_IgE CH2 domain 97.5 0.00099 2.1E-08 44.6 8.2 69 35-110 13-86 (94)
351 PHA02633 hypothetical protein; 97.5 0.0003 6.5E-09 41.7 4.7 38 237-274 19-56 (63)
352 PHA03271 envelope glycoprotein 97.5 0.047 1E-06 45.8 18.7 235 18-307 91-382 (490)
353 smart00407 IGc1 Immunoglobulin 97.4 0.0018 3.9E-08 41.3 8.4 65 39-109 2-70 (75)
354 cd07696 IgC_CH3 CH3 domain (th 97.4 0.0016 3.4E-08 43.8 8.3 78 27-110 5-86 (96)
355 cd07699 IgC_L Immunoglobulin C 97.4 0.0011 2.3E-08 45.1 7.3 76 27-109 8-88 (100)
356 cd05772 IgC_SIRP Signal-regula 97.3 0.0027 5.8E-08 43.9 8.8 71 32-110 17-92 (111)
357 PF08204 V-set_CD47: CD47 immu 97.2 0.00051 1.1E-08 48.2 3.5 83 188-271 25-120 (130)
358 cd05768 IgC_CH4 CH4 domain (fo 97.1 0.0027 5.8E-08 43.3 7.0 76 28-110 8-91 (102)
359 cd05721 IgV_CTLA-4 Immunoglobu 97.1 0.0079 1.7E-07 41.3 9.1 20 236-255 74-93 (115)
360 PF07654 C1-set: Immunoglobuli 97.1 0.0051 1.1E-07 40.1 7.9 65 36-110 8-77 (83)
361 cd05766 IgC_MHC_II_beta Class 97.1 0.0056 1.2E-07 41.0 8.0 67 34-110 12-83 (94)
362 cd05769 IgC_TCR_beta T cell re 97.1 0.0046 9.9E-08 43.0 7.5 82 27-115 9-97 (115)
363 cd05719 Ig2_PVR_like Second im 97.1 0.0084 1.8E-07 40.2 8.6 65 37-109 16-81 (95)
364 PHA02982 hypothetical protein; 97.0 0.024 5.2E-07 42.9 11.3 124 29-161 32-169 (251)
365 cd04986 IgC_CH2 CH2 domain (se 97.0 0.004 8.6E-08 41.9 6.7 76 27-110 10-89 (99)
366 KOG1480|consensus 97.0 0.00019 4.1E-09 64.0 0.3 175 20-262 23-209 (909)
367 cd05770 IgC_beta2m Class I maj 97.0 0.0092 2E-07 39.8 8.1 67 34-110 13-83 (93)
368 cd05767 IgC_MHC_II_alpha Class 97.0 0.014 3.1E-07 39.0 9.0 66 35-110 14-84 (94)
369 cd07692 Ig_CD3_epsilon Immunog 96.9 0.0025 5.5E-08 38.6 4.7 50 34-107 5-54 (65)
370 cd07704 Ig2_Nectin-3-4_like Se 96.9 0.02 4.3E-07 38.3 9.4 73 29-109 9-83 (97)
371 PF11465 Receptor_2B4: Natural 96.9 0.014 2.9E-07 39.2 8.3 34 237-270 72-106 (108)
372 PHA02633 hypothetical protein; 96.9 0.0027 5.8E-08 37.8 4.4 36 88-123 19-55 (63)
373 cd07697 IgC_TCR_gamma T cell r 96.9 0.014 3.1E-07 39.1 8.6 27 33-59 13-41 (96)
374 cd07703 Ig2_Nectin-2_like Seco 96.9 0.015 3.2E-07 38.9 8.6 65 37-109 16-81 (95)
375 PHA03042 CD47-like protein; Pr 96.8 0.011 2.4E-07 46.6 8.1 71 189-271 30-105 (286)
376 cd04985 IgC_CH1 CH1 domain (fi 96.7 0.018 3.9E-07 38.6 8.0 69 35-110 15-87 (95)
377 cd07689 Ig2_VCAM-1 Second immu 96.7 0.013 2.7E-07 39.1 6.8 71 187-260 12-87 (99)
378 cd07691 Ig_CD3_gamma_delta Imm 96.5 0.016 3.5E-07 35.5 5.8 60 36-122 6-65 (69)
379 PF08204 V-set_CD47: CD47 immu 96.4 0.0057 1.2E-07 43.0 4.3 75 33-108 24-106 (130)
380 KOG4597|consensus 96.2 0.0066 1.4E-07 51.5 4.4 90 180-273 201-294 (560)
381 PF07354 Sp38: Zona-pellucida- 96.2 0.0082 1.8E-07 47.2 4.6 50 203-259 11-60 (271)
382 PHA03269 envelope glycoprotein 95.9 0.99 2.1E-05 39.1 16.1 173 13-204 321-515 (566)
383 PF07354 Sp38: Zona-pellucida- 95.8 0.016 3.5E-07 45.6 4.3 48 49-108 11-58 (271)
384 PF05790 C2-set: Immunoglobuli 95.7 0.22 4.8E-06 32.0 8.7 34 237-270 44-78 (80)
385 cd05890 Ig2_Nectin-1_like Seco 95.6 0.087 1.9E-06 34.6 6.6 73 192-269 22-97 (98)
386 cd07689 Ig2_VCAM-1 Second immu 95.5 0.085 1.8E-06 35.2 6.4 27 33-59 12-41 (99)
387 PF11465 Receptor_2B4: Natural 95.4 0.28 6.1E-06 33.1 8.6 40 75-117 62-101 (108)
388 TIGR00864 PCC polycystin catio 95.1 5.7 0.00012 42.6 25.7 245 27-310 1703-1992(2740)
389 PHA03270 envelope glycoprotein 95.1 1.6 3.5E-05 37.3 13.9 169 17-204 217-404 (466)
390 PF02480 Herpes_gE: Alphaherpe 95.0 0.05 1.1E-06 47.4 5.4 146 88-257 90-290 (439)
391 TIGR00864 PCC polycystin catio 94.9 6.7 0.00014 42.2 23.4 210 27-273 1873-2127(2740)
392 PHA02914 Immunoglobulin-like d 94.3 2.9 6.2E-05 35.5 15.9 126 27-161 270-416 (500)
393 PHA03282 envelope glycoprotein 94.3 1.4 3E-05 38.1 11.8 21 237-257 334-354 (540)
394 KOG1480|consensus 94.2 0.022 4.7E-07 51.5 1.3 73 24-109 132-205 (909)
395 PHA03271 envelope glycoprotein 93.9 3.6 7.9E-05 35.1 13.9 158 31-204 255-433 (490)
396 PHA03042 CD47-like protein; Pr 93.8 0.75 1.6E-05 36.7 8.8 58 34-108 29-91 (286)
397 PHA03283 envelope glycoprotein 93.8 1 2.2E-05 39.4 10.4 75 88-162 135-234 (542)
398 PHA03286 envelope glycoprotein 93.2 1.9 4.2E-05 37.0 10.9 75 88-162 128-226 (492)
399 PHA02865 MHC-like TNF binding 93.2 0.56 1.2E-05 39.0 7.7 34 175-212 203-238 (338)
400 KOG4597|consensus 93.2 0.19 4.2E-06 43.1 5.1 92 23-121 198-292 (560)
401 PHA03273 envelope glycoprotein 92.9 5.8 0.00013 34.5 16.6 171 17-204 233-424 (486)
402 PHA03240 envelope glycoprotein 90.7 0.59 1.3E-05 35.6 4.7 75 28-105 30-123 (258)
403 PHA03052 Hypothetical protein; 89.9 1.3 2.7E-05 27.1 4.7 31 29-59 5-38 (69)
404 PHA03240 envelope glycoprotein 89.8 0.88 1.9E-05 34.7 5.0 106 135-270 33-143 (258)
405 PF02124 Marek_A: Marek's dise 89.1 6.3 0.00014 30.6 9.2 98 206-307 8-112 (211)
406 PF06328 Lep_receptor_Ig: Ig-l 86.9 3.6 7.9E-05 27.1 6.0 67 182-255 10-81 (89)
407 PF03921 ICAM_N: Intercellular 86.6 7.2 0.00016 25.8 9.6 82 178-274 6-89 (91)
408 PHA02865 MHC-like TNF binding 85.4 6.9 0.00015 32.8 8.1 21 38-58 216-238 (338)
409 PHA03052 Hypothetical protein; 82.7 2.6 5.6E-05 25.8 3.4 31 183-213 5-38 (69)
410 PHA03112 IL-18 binding protein 82.5 5.9 0.00013 28.4 5.7 78 188-265 36-125 (141)
411 KOG0613|consensus 81.9 5.6 0.00012 39.1 7.1 75 88-162 279-372 (1205)
412 PF05790 C2-set: Immunoglobuli 80.9 12 0.00027 24.0 9.2 20 88-107 44-63 (80)
413 PF06832 BiPBP_C: Penicillin-B 80.4 14 0.00029 24.2 8.8 56 192-264 31-86 (89)
414 PF06328 Lep_receptor_Ig: Ig-l 80.3 14 0.00031 24.3 7.0 67 28-106 10-81 (89)
415 KOG1026|consensus 80.1 8.7 0.00019 36.1 7.5 132 136-274 203-366 (774)
416 PF02124 Marek_A: Marek's dise 79.9 27 0.00057 27.3 15.3 112 88-204 40-162 (211)
417 PHA02935 Hypothetical protein; 79.6 11 0.00024 28.7 6.6 64 88-151 103-166 (349)
418 PHA03189 UL14 tegument protein 75.6 44 0.00096 27.5 10.4 20 28-47 59-78 (348)
419 PHA03281 envelope glycoprotein 74.5 66 0.0014 29.0 12.9 76 87-162 298-395 (642)
420 KOG0613|consensus 73.9 11 0.00023 37.3 6.5 84 184-270 343-427 (1205)
421 KOG0200|consensus 66.4 53 0.0012 30.6 9.3 24 236-259 117-140 (609)
422 PF01688 Herpes_gI: Alphaherpe 65.8 19 0.00041 26.7 5.0 34 237-270 125-158 (161)
423 PHA03189 UL14 tegument protein 64.6 81 0.0018 26.1 8.8 25 183-207 60-86 (348)
424 PF01688 Herpes_gI: Alphaherpe 54.7 44 0.00096 24.8 5.3 25 86-110 123-147 (161)
425 PF11141 DUF2914: Protein of u 50.7 57 0.0012 20.0 7.2 57 207-270 9-65 (66)
426 PF11049 KSHV_K1: Glycoprotein 50.0 35 0.00076 20.8 3.4 22 194-217 2-23 (71)
427 PHA03290 envelope glycoprotein 49.9 53 0.0012 27.5 5.5 36 237-272 130-165 (357)
428 PHA03112 IL-18 binding protein 49.8 74 0.0016 23.0 5.6 27 33-59 35-63 (141)
429 PF03921 ICAM_N: Intercellular 49.3 76 0.0016 21.0 10.5 82 26-125 8-90 (91)
430 PHA03282 envelope glycoprotein 48.4 48 0.001 29.2 5.3 35 237-271 125-161 (540)
431 PHA03290 envelope glycoprotein 47.5 60 0.0013 27.2 5.4 38 86-123 128-166 (357)
432 PHA03289 envelope glycoprotein 43.8 74 0.0016 26.5 5.4 35 237-271 123-157 (352)
433 PHA03283 envelope glycoprotein 43.4 1.1E+02 0.0023 27.6 6.7 37 236-272 134-170 (542)
434 PHA03292 envelope glycoprotein 42.4 74 0.0016 27.2 5.3 34 237-270 129-162 (413)
435 cd05890 Ig2_Nectin-1_like Seco 41.3 1.1E+02 0.0024 20.5 7.3 61 40-108 24-85 (98)
436 KOG1026|consensus 40.3 21 0.00045 33.7 2.2 75 184-273 201-275 (774)
437 PHA03292 envelope glycoprotein 39.8 98 0.0021 26.5 5.7 38 85-122 126-164 (413)
438 PHA03291 envelope glycoprotein 37.4 99 0.0021 26.2 5.3 35 237-271 130-164 (401)
439 PHA02935 Hypothetical protein; 36.9 1.9E+02 0.0042 22.2 6.8 62 236-299 102-168 (349)
440 PHA03281 envelope glycoprotein 33.3 1.3E+02 0.0028 27.3 5.6 36 237-272 299-335 (642)
441 COG2740 Predicted nucleic-acid 31.5 1.2E+02 0.0026 20.3 4.2 43 251-294 9-51 (95)
442 PHA03286 envelope glycoprotein 30.8 2E+02 0.0043 25.5 6.2 35 237-271 128-163 (492)
443 PF05955 Herpes_gp2: Equine he 29.4 2.5E+02 0.0055 21.2 9.1 115 193-307 4-129 (226)
444 PF03174 CHB_HEX_C: Chitobiase 29.2 1.5E+02 0.0032 18.5 5.2 61 186-265 11-71 (75)
445 PF06832 BiPBP_C: Penicillin-B 28.8 1.7E+02 0.0036 19.0 8.0 42 19-62 8-53 (89)
446 PHA03289 envelope glycoprotein 28.7 1.4E+02 0.003 25.0 4.8 35 87-121 122-157 (352)
447 PF02480 Herpes_gE: Alphaherpe 27.9 77 0.0017 28.1 3.6 30 88-117 270-299 (439)
448 PF00801 PKD: PKD domain; Int 25.9 1.6E+02 0.0035 17.8 6.0 28 186-213 7-34 (69)
449 PF02440 Adeno_E3_CR1: Adenovi 25.8 1.7E+02 0.0036 17.9 4.8 20 187-210 2-21 (63)
450 PHA03291 envelope glycoprotein 23.4 1.2E+02 0.0026 25.7 3.6 35 87-121 129-164 (401)
451 PF05566 Pox_vIL-18BP: Orthopo 23.0 2.6E+02 0.0056 19.2 5.9 35 234-268 91-125 (126)
452 PF13670 PepSY_2: Peptidase pr 21.7 2.3E+02 0.0049 18.1 4.3 36 239-277 44-79 (83)
453 KOG3611|consensus 21.0 2.9E+02 0.0062 26.6 6.0 64 38-109 571-634 (737)
454 KOG3611|consensus 20.8 1.4E+02 0.003 28.7 3.9 34 237-270 613-647 (737)
No 1
>KOG3513|consensus
Probab=100.00 E-value=7.3e-33 Score=247.48 Aligned_cols=265 Identities=23% Similarity=0.357 Sum_probs=208.6
Q ss_pred CCCCceecC-CcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCC
Q psy15734 19 PDMPRFAEP-VANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQET 97 (314)
Q Consensus 19 ~~~p~~~~~-~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 97 (314)
...|.+..+ ++......|+.+.|.|.+.|.|.|++.|.|.++..+ ..+...... ...|.|.|++.+
T Consensus 238 ~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~----------~~r~~~~~~---~~vL~I~nv~~~ 304 (1051)
T KOG3513|consen 238 EYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPP----------PRRATYSNY---GKVLKIPNVQYE 304 (1051)
T ss_pred ccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCC----------Ccceeeecc---ccEEEecccCcC
Confidence 456666554 557888999999999999999999999999876432 122222211 127999999999
Q ss_pred CCeEEEEEEecC-CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCe---e
Q psy15734 98 DRGWYMCQINTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGE---L 173 (314)
Q Consensus 98 d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~---~ 173 (314)
|+|.|.|.+.|. |.......|.|..+|.+...+ .+..+..|+++.|.|.+.|.|.|.++|++ ++.++..... .
T Consensus 305 D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~--~d~~~~~gs~v~~eC~a~g~P~p~v~Wlk-Ng~pl~~~~r~~~~ 381 (1051)
T KOG3513|consen 305 DAGEYECIAENSRGSATHSGHVTVYAPPYWLQKP--QDTEADTGSNVTLECKASGKPNPTVKWLK-NGEPLEPAERDPRY 381 (1051)
T ss_pred CCeEEEEEEecccccceeeEEEEEecCchhhccc--ceeEecCCCCeEEEEEecCCCCCceEEee-CCeecCccCCCcce
Confidence 999999999875 677788899999999998754 77889999999999999999999999999 8877764433 1
Q ss_pred C-----------------------------------------CCeEEcCC--CcceeecCccEEEEEEEeecCCceeEEe
Q psy15734 174 V-----------------------------------------PPMLTIPN--QLEGAFVSQTVELHCHTEAFPASLNYWT 210 (314)
Q Consensus 174 ~-----------------------------------------~p~~~~~~--~~~~v~~g~~~~l~C~~~g~p~p~~~W~ 210 (314)
. +|.|...+ ..+.+..|.++.|.|...+.|.|.+.|.
T Consensus 382 ~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~ 461 (1051)
T KOG3513|consen 382 KIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWL 461 (1051)
T ss_pred EEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEE
Confidence 1 45555444 3347889999999999999999999999
Q ss_pred cCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCeeEE--EEcccccc
Q psy15734 211 NEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQI--RKMSRLHM 288 (314)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~--~~~~~~~~ 288 (314)
++++ .+.++.++.+ .+++ +|.|.+++++|+|.|+|.|.|..|.+.....|.|...+.-.+.. ..+..+++
T Consensus 462 k~~~-~~~~~~r~~i--~edG-----tL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v~~g~~ 533 (1051)
T KOG3513|consen 462 KGGE-KLLQSGRIRI--LEDG-----TLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDVKVGES 533 (1051)
T ss_pred cCCc-ccccCceEEE--CCCC-----cEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhhhccCce
Confidence 9755 6666666554 5777 99999999999999999999999999999999998775333311 23445566
Q ss_pred EeEEEEEeeccCC--CccceE
Q psy15734 289 GAYLCIASNGVVP--SVSHRI 307 (314)
Q Consensus 289 g~~~C~a~~~~~~--~~~w~v 307 (314)
..+.|.+.-++.. .+.|..
T Consensus 534 v~l~Ce~shD~~ld~~f~W~~ 554 (1051)
T KOG3513|consen 534 VTLTCEASHDPSLDITFTWKK 554 (1051)
T ss_pred EEEEeecccCCCcceEEEEEE
Confidence 6799999877755 445654
No 2
>KOG3513|consensus
Probab=100.00 E-value=2.4e-31 Score=237.88 Aligned_cols=274 Identities=24% Similarity=0.389 Sum_probs=207.0
Q ss_pred CCCcee-cCCcceEEEcCCcEEEEEEec-CCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCC
Q psy15734 20 DMPRFA-EPVANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQET 97 (314)
Q Consensus 20 ~~p~~~-~~~~~~~v~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 97 (314)
..+.|. .....+.+.+|+.+.|.|... +.|.+.+.|..+....+. ...+.|+....+ +.|.|.++..+
T Consensus 134 ~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~------~~~~~r~~~~~~----G~Lyfs~V~~~ 203 (1051)
T KOG3513|consen 134 FIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFV------QIDNRRVFSQEN----GNLYFSNVETS 203 (1051)
T ss_pred ccccCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCccc------ccCcceeEeccc----ceEEEeecchh
Confidence 344554 346788999999999999984 467899999986544322 122335554443 37999999999
Q ss_pred CCeEEEEEEecC----CCcceeEEEEEE-------eCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCce
Q psy15734 98 DRGWYMCQINTV----PMTSQKGYLQVV-------VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKA 166 (314)
Q Consensus 98 d~G~Y~C~~~~~----~~~~~~~~l~v~-------~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~ 166 (314)
|.+.|.|.+.+. ......+.|.+. .+|.+.... +.......|+.+.|.|.+.|+|.|++.|.+.++.+
T Consensus 204 D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~-p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~ 282 (1051)
T KOG3513|consen 204 DFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPF-PETETALKGQSVKLECFALGNPTPQIKWRKVDGKP 282 (1051)
T ss_pred hcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCC-CCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCC
Confidence 999999999653 222333445542 245555443 44667789999999999999999999999987765
Q ss_pred eecCCeeC----------------------------------------CCeEEcCCCcceeecCccEEEEEEEeecCCce
Q psy15734 167 INYNGELV----------------------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASL 206 (314)
Q Consensus 167 ~~~~~~~~----------------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~ 206 (314)
+....... +|.+...+++..+..|+++.|.|.+.|.|.|.
T Consensus 283 ~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~ 362 (1051)
T KOG3513|consen 283 PPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPT 362 (1051)
T ss_pred CCcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCc
Confidence 44221111 88888899999999999999999999999999
Q ss_pred eEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEE---------------
Q psy15734 207 NYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN--------------- 271 (314)
Q Consensus 207 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~--------------- 271 (314)
+.|+++ +..+....+.......++ .|.|.+++..|+|.|+|.|+|.+|...+++.|+|.
T Consensus 363 v~WlkN-g~pl~~~~r~~~~~i~~g-----~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~ 436 (1051)
T KOG3513|consen 363 VKWLKN-GEPLEPAERDPRYKIDDG-----TLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKV 436 (1051)
T ss_pred eEEeeC-CeecCccCCCcceEEeCC-----EEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEE
Confidence 999997 555555555333334555 99999999999999999999999999999999883
Q ss_pred --------------------------------------ecCCCeeEEEEccccccEeEEEEEeeccCCCccceEEEEE
Q psy15734 272 --------------------------------------LVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTV 311 (314)
Q Consensus 272 --------------------------------------~~~~~~~~~~~~~~~~~g~~~C~a~~~~~~~~~w~v~l~v 311 (314)
..+...|.|.++++.|.|.|+|.|.|..+ ...-.+.|.|
T Consensus 437 ~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G-~a~~~~~L~V 513 (1051)
T KOG3513|consen 437 MAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLG-KAESTGNLIV 513 (1051)
T ss_pred EEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccC-ccceEEEEEE
Confidence 13567788899999999999999999874 3334444444
No 3
>KOG4194|consensus
Probab=99.95 E-value=2e-26 Score=193.33 Aligned_cols=256 Identities=24% Similarity=0.359 Sum_probs=190.4
Q ss_pred eeeeccCCCCCceecCCcceEEEcCCcEEEEEEecC--CCceEEEEEEcCceeEE--EeeeeeeecCcCEEEEeC-Ccee
Q psy15734 12 FKTKCEKPDMPRFAEPVANVTATVGKEALMACVVEN--LREYKVAWVKMITQTIL--SIHHKVVTQNKRVSITFN-DHRS 86 (314)
Q Consensus 12 ~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~--~~~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~ 86 (314)
....+....+|++...|+.+.+..|++++|+|.+.+ ..+..+.|.+++..... ......+....|.....+ ..-.
T Consensus 494 ~~lvC~DspkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~ 573 (873)
T KOG4194|consen 494 ANLVCDDSPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYT 573 (873)
T ss_pred hhceecCCCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhh
Confidence 445566778999999999999999999999999965 56789999985432110 000000111111000000 0112
Q ss_pred EEEEEeeecCCCCeEEEEEEecC--CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCC
Q psy15734 87 WFLHLRDVQETDRGWYMCQINTV--PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDG 164 (314)
Q Consensus 87 ~~L~i~~~~~~d~G~Y~C~~~~~--~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~ 164 (314)
+.|++.|+...|.|.|+|.+.|. ..-+..+.|.|...|.+... |.+.+...|+.+.|.|.+.|.|.|+|.|.+.+|
T Consensus 574 ~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtkt--P~dltl~tg~mArl~CaAtG~P~PeIawqkdgg 651 (873)
T KOG4194|consen 574 AILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKT--PEDLTLRTGQMARLECAATGHPRPEIAWQKDGG 651 (873)
T ss_pred heeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccC--cccceeecccceeeeeeccCCCCcceeehhcCC
Confidence 37999999999999999999875 33466788999999999876 478899999999999999999999999999655
Q ss_pred ceeecCCeeC--------------------------------------------CCeEEcCCCcceeecCccEEEEEEEe
Q psy15734 165 KAINYNGELV--------------------------------------------PPMLTIPNQLEGAFVSQTVELHCHTE 200 (314)
Q Consensus 165 ~~~~~~~~~~--------------------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~ 200 (314)
..++...... .|.+.+|..+..|..|+.+.|.|.+.
T Consensus 652 tdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~ 731 (873)
T KOG4194|consen 652 TDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAE 731 (873)
T ss_pred CCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecC
Confidence 5444221110 67777788888999999999999999
Q ss_pred ecCC-ceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCC
Q psy15734 201 AFPA-SLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGD 276 (314)
Q Consensus 201 g~p~-p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~ 276 (314)
+.|. |...|+|+++.++..... .. ...+. .|.+.+...+|+|.|+|+..|..|.....+.+.|...++.
T Consensus 732 ~~~a~pr~~W~k~d~pil~t~rh-~f-~d~dQ-----llvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~~~ 801 (873)
T KOG4194|consen 732 GAPADPRLEWFKEDKPILITERH-TF-PDGDQ-----LLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKKKC 801 (873)
T ss_pred CCCCCccccccCCCCceEEeecc-cC-CCCCe-----EEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecCCc
Confidence 9988 999999987776655422 11 12232 7888999999999999999999998888888777666544
No 4
>KOG4221|consensus
Probab=99.94 E-value=1.2e-25 Score=201.19 Aligned_cols=268 Identities=16% Similarity=0.226 Sum_probs=194.2
Q ss_pred CCCceecCCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecC-
Q psy15734 20 DMPRFAEPVANVTATVGKEALMACVVENL--REYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQE- 96 (314)
Q Consensus 20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~- 96 (314)
.+-.|+.++++. .+|..+.|.|..... +.+.+.|.+ |+..+. ...+.+..+..+ ++|.|.++..
T Consensus 40 ~~~~f~~ep~d~--~~~~svlLecs~~~~~~~~~~i~wkk-Dg~~l~------e~~d~~~~~LsN----gSl~i~~v~~~ 106 (1381)
T KOG4221|consen 40 TPLQFLLEPSDA--MEGSSVLLECSAYAAGGTSVKIEWKK-DGSQLN------EVYDDRRQLLSN----GSLYISSVLAS 106 (1381)
T ss_pred CcceEEeccccc--ccccceEEeccccccCCCCeeEEEcc-Cchhhh------hhhhhHHhhccC----CceeEeeeccc
Confidence 345666666644 899999999998443 478999998 443221 111233333333 3788888876
Q ss_pred ----CCCeEEEEEEecC---CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeec
Q psy15734 97 ----TDRGWYMCQINTV---PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINY 169 (314)
Q Consensus 97 ----~d~G~Y~C~~~~~---~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~ 169 (314)
-|.|.|+|.+.-. ...++.+.|.+...+.+.... .+.++..|+.+.|.|.+.+.|.|.+.|.+ +..++..
T Consensus 107 kh~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~--~~~t~~~g~ta~f~c~vn~e~~p~i~w~k-n~~pl~~ 183 (1381)
T KOG4221|consen 107 KHNKVDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQP--ESTTLLYGQTALFSCEVNAEPVPTIMWLK-NDQPLPL 183 (1381)
T ss_pred ccccccCceEEEEEEccccceeecceEEEEecccCccccCc--cceeEecCCcEEEEEEEcCccCceeEEec-ccccccC
Confidence 8899999999532 344666777777777776654 66788999999999999998999999999 6666655
Q ss_pred CCeeC------------------------------------------------CCeEEcCCCcceeecCccEEEEEEEee
Q psy15734 170 NGELV------------------------------------------------PPMLTIPNQLEGAFVSQTVELHCHTEA 201 (314)
Q Consensus 170 ~~~~~------------------------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g 201 (314)
.+++. ...|...+....+..|+++.|.|.+.|
T Consensus 184 ~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~ 263 (1381)
T KOG4221|consen 184 DSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSG 263 (1381)
T ss_pred CCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecC
Confidence 54332 223455667778999999999999999
Q ss_pred cCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCeeEEE
Q psy15734 202 FPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIR 281 (314)
Q Consensus 202 ~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~ 281 (314)
.|+|+|.|.+++..+...+ +++.....+ .|.|.+++..|+|.|+|.|.|......+...|.|..+|+-.-...
T Consensus 264 ~p~p~v~Wlrng~~i~~ds--~rivl~g~~-----slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~ 336 (1381)
T KOG4221|consen 264 VPKPSVKWLRNGEKISVDS--YRIVLVGGS-----SLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPT 336 (1381)
T ss_pred CCCCceEEeeCCeeeeecc--eEEEEeccc-----ceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCc
Confidence 9999999999654444444 555555454 999999999999999999999777778888888888754222222
Q ss_pred Ecc--ccccEeEEEEEeeccCCCccceEEEE
Q psy15734 282 KMS--RLHMGAYLCIASNGVVPSVSHRIMVT 310 (314)
Q Consensus 282 ~~~--~~~~g~~~C~a~~~~~~~~~w~v~l~ 310 (314)
... +...-.+.|.+.+.|.|.+.|--..+
T Consensus 337 ~l~A~e~~die~ec~~~g~p~p~v~w~kNgd 367 (1381)
T KOG4221|consen 337 TLVAHESMDIEFECPVSGKPIPTVRWYKNGD 367 (1381)
T ss_pred ceeeeeccceeEeCCCCCCCcceEEEEecCc
Confidence 221 23334699999999999999965443
No 5
>KOG4221|consensus
Probab=99.92 E-value=2.3e-23 Score=186.85 Aligned_cols=236 Identities=28% Similarity=0.452 Sum_probs=185.3
Q ss_pred eeeccCCCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEe
Q psy15734 13 KTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLR 92 (314)
Q Consensus 13 ~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 92 (314)
.+.+.....+.|...+.+.++..|+++.|.|.+.+.+.+.+.|.+++. . ...+.|+.+..++ .|.|.
T Consensus 132 ~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~-p--------l~~~~r~i~lpsG----~L~I~ 198 (1381)
T KOG4221|consen 132 TAKVALAGLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQ-P--------LPLDSRVIVLPSG----ALEIS 198 (1381)
T ss_pred eEEEEecccCccccCccceeEecCCcEEEEEEEcCccCceeEEecccc-c--------ccCCCcEEEcCCC----cEEec
Confidence 344455677888888999999999999999999998888999999553 2 2234455554443 79999
Q ss_pred eecCCCCeEEEEEEecC--CCcceeEEEEEEeCCce----eeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCce
Q psy15734 93 DVQETDRGWYMCQINTV--PMTSQKGYLQVVVPPRI----LLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKA 166 (314)
Q Consensus 93 ~~~~~d~G~Y~C~~~~~--~~~~~~~~l~v~~~p~~----~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~ 166 (314)
+++..|.|.|+|.+.+. .+.+..+.|.|...|.. .....+...++.+|+++.|.|.+.+.|.|.|.|.+ |+..
T Consensus 199 ~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlr-ng~~ 277 (1381)
T KOG4221|consen 199 GLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLR-NGEK 277 (1381)
T ss_pred ccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEee-CCee
Confidence 99999999999999764 34466778888743332 22234677889999999999999999999999999 8887
Q ss_pred eecCCeeC------------------------------------------CCeEEcCCCcceeecCccEEEEEEEeecCC
Q psy15734 167 INYNGELV------------------------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPA 204 (314)
Q Consensus 167 ~~~~~~~~------------------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~ 204 (314)
+..++... +|.|...+....+.++.++.|.|.+.|.|.
T Consensus 278 i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~ 357 (1381)
T KOG4221|consen 278 ISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPI 357 (1381)
T ss_pred eeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCc
Confidence 76654221 777777788888889999999999999999
Q ss_pred ceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734 205 SLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270 (314)
Q Consensus 205 p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 270 (314)
|.+.|+++ ++....+..+.+ ..++ .|+|.-+...|.|.|+|.++|..|.......+.|
T Consensus 358 p~v~w~kN-gd~~ipsdy~ki--~~~~-----~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~v 415 (1381)
T KOG4221|consen 358 PTVRWYKN-GDRIIPSDYFKI--VGGG-----NLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEV 415 (1381)
T ss_pred ceEEEEec-CcccCcccceEe--cCCC-----CcEEEEEecccchhhhhhhccCcccccchhhhee
Confidence 99999997 444444554443 2333 5999999999999999999999999887777644
No 6
>KOG4222|consensus
Probab=99.92 E-value=7.5e-24 Score=188.85 Aligned_cols=228 Identities=22% Similarity=0.341 Sum_probs=172.6
Q ss_pred eecCCcceEEEcCCcEEEEEEe-cCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEE
Q psy15734 24 FAEPVANVTATVGKEALMACVV-ENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWY 102 (314)
Q Consensus 24 ~~~~~~~~~v~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 102 (314)
|-..++.+.+..|+.+.|.|.- .+.+.+.+.|.|++.... +....++.+... +.|.|.|++++|+|.|
T Consensus 134 frv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~-------~~~~~~~~lisg----G~LlIsnvrksD~GtY 202 (1281)
T KOG4222|consen 134 FRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLD-------HYDVPIIALISG----GNLLISNVRKSDEGTY 202 (1281)
T ss_pred cccCcccccccccceeEEeccCCCCCCCCcceeecCCCccc-------cccceeEEEecC----CcEEEeccccCCCcee
Confidence 4445677889999999999987 567889999999554322 111222333222 3799999999999999
Q ss_pred EEEEecC--CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCeeC------
Q psy15734 103 MCQINTV--PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELV------ 174 (314)
Q Consensus 103 ~C~~~~~--~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~~------ 174 (314)
.|.+.|. .+.+...+|.|+++|.+...+ .+..+..|..+.+.|.+.|.|.|.+.|.+ ++..++......
T Consensus 203 ~CVatNmvG~ReS~~A~lsv~e~P~f~~rp--~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk-~~~~~P~~ry~i~~d~qt 279 (1281)
T KOG4222|consen 203 ACVATNMVGERESIPARLSVQEKPWFWKRP--KDLAVLVGAAAEFDCRVGGDPQPTVRWKK-DDPSLPRSRYSILDDTQT 279 (1281)
T ss_pred eeeecccccccccccceeeeccCCcccccc--ccceeecccccccccccCCCCCCceeeec-cCCCCCccceeeeecccc
Confidence 9999775 355667899999999987754 77888899999999999999999999999 444433221110
Q ss_pred -----------------------------------CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeec
Q psy15734 175 -----------------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIIT 219 (314)
Q Consensus 175 -----------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~ 219 (314)
+|.|...+.+..+..|..++|.|.+.|.|.|.+.|.+.+...++.
T Consensus 280 l~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf 359 (1281)
T KOG4222|consen 280 LRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLF 359 (1281)
T ss_pred ccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccCceEEeeeecCCCCCcceEEeccCcceecc
Confidence 777777788888999999999999999999999999986655544
Q ss_pred C-----CceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734 220 G-----DDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270 (314)
Q Consensus 220 ~-----~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 270 (314)
. .+.+.+....+ +|.|.+++..|.|.|.|...+..|.......+.+
T Consensus 360 ~~~p~~~~~r~svs~~g-----~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~q 410 (1281)
T KOG4222|consen 360 SASPPSSNGRGSVSPTG-----TLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQ 410 (1281)
T ss_pred cCCCCCcCccceecCCC-----CcccccccccccceEeecccccccccccceeEEE
Confidence 2 22233444555 9999999999999999998887776644444433
No 7
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.91 E-value=1.5e-22 Score=167.96 Aligned_cols=213 Identities=14% Similarity=0.222 Sum_probs=137.3
Q ss_pred ceEEEcCCcEEEEEEe-----cCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEE
Q psy15734 30 NVTATVGKEALMACVV-----ENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMC 104 (314)
Q Consensus 30 ~~~v~~g~~~~l~C~~-----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 104 (314)
...+.+|+.+.|.|.+ .+.+.+.+.|+|++... .+.....++ ..|.|.++..+|+|.|+|
T Consensus 35 ~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~------------~~~~~~~~g---~~l~i~~~~~~DsG~Y~C 99 (326)
T PHA02785 35 SFMELENEPVILPCPQINTLSSGYNILDILWEKRGADN------------DRIIPIDNG---SNMLILNPTQSDSGIYIC 99 (326)
T ss_pred hhhhhcCCCEEEECCCccccccCCCCceEEEEECCCcc------------ceEEEccCC---ceEEEcccCcccCeEEEE
Confidence 3456689999999997 57788899999965320 010011111 148899999999999999
Q ss_pred EEecC-CCcceeEEEEEEeC--CceeeecCcceeEEecCceEEEEEEe-----cccCCCceEEEcCCCce----e--ecC
Q psy15734 105 QINTV-PMTSQKGYLQVVVP--PRILLDRTSTDVVVREGTEVTLECSA-----VGYPEPYVAWRREDGKA----I--NYN 170 (314)
Q Consensus 105 ~~~~~-~~~~~~~~l~v~~~--p~~~~~~~~~~~~~~~g~~~~l~C~~-----~~~p~p~~~W~~~~~~~----~--~~~ 170 (314)
.+.|. +.....+.|.|... +.+.... ....+.+|..+.|.|.. .+.|.|.+.|++ +... + ..+
T Consensus 100 ~a~N~~g~~~~s~~L~V~~~~~~~~~~~~--~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k-~~~~~~~r~~~~~~ 176 (326)
T PHA02785 100 ITKNETYCDMMSLNLTIVSVSESNIDLIS--YPQIVNERSTGEMVCPNINAFIASNVNADIIWSG-HRRLRNKRLKQRTP 176 (326)
T ss_pred EEECCCcceEEEEEEEEEecCCCccceee--ccceecccCcEEEECCChhhcccCCCCceEEEcc-CCccCCcceEecCC
Confidence 99876 34455667777653 2232222 33446789999999972 356889999987 3311 0 001
Q ss_pred CeeC----------------------------------------CCeEEcCCCcceeecCccEEEEEEEeecCCc---ee
Q psy15734 171 GELV----------------------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPAS---LN 207 (314)
Q Consensus 171 ~~~~----------------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p---~~ 207 (314)
+.+. ||.+.. +....+..|++++|.|.+.|.|.+ .+
T Consensus 177 ~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~-p~~~~~~~G~~v~L~C~a~g~P~~~~~~v 255 (326)
T PHA02785 177 GIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQL-PEGVVTSIGSNLTIACRVSLRPPTTDADV 255 (326)
T ss_pred CeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecC-CCcEEecCCCcEEEEEEEECCCCCCCceE
Confidence 1111 233322 345567789999999999998874 89
Q ss_pred EEecCCCeeeecC---CceeeeEee------CCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734 208 YWTNEKGDMIITG---DDYEDSRLI------NGYSCHMTLKIRSILSHQFGSYRCVAVNALGET 262 (314)
Q Consensus 208 ~W~~~~~~~~~~~---~~~~~~~~~------~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~ 262 (314)
.|++++ ..+... ...+..... ......+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus 256 ~W~kng-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~ 318 (326)
T PHA02785 256 FWISNG-MYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS 318 (326)
T ss_pred EEEECC-EECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence 999974 333211 111111111 111224589999999999999999999988543
No 8
>KOG4222|consensus
Probab=99.91 E-value=1.4e-23 Score=187.19 Aligned_cols=270 Identities=21% Similarity=0.311 Sum_probs=194.3
Q ss_pred cCCCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeee--
Q psy15734 17 EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDV-- 94 (314)
Q Consensus 17 ~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-- 94 (314)
....+|+++.-+....+..|+.++|.|.+++.|.+.+.|||++ +.... ....+.|+-+ .+ ++|.+..+
T Consensus 27 ~qd~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G-~~~~~----~e~~shR~~l-p~----gsLf~l~~ah 96 (1281)
T KOG4222|consen 27 AQDQPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDG-ENVFK----GEPGSHRFLL-PD----GSLFLLRLAH 96 (1281)
T ss_pred cccCCCceEecchhhhccCCCCceeecCCCCCCCCceecccCC-cccCC----CCCCCcceec-CC----ccEEEEeccc
Confidence 3456889999999999999999999999999999999999954 32111 0111122221 11 13433332
Q ss_pred ---cCCCCeEEEEEEecC--CCcceeEEEEEEeCC-ceeeecCcceeEEecCceEEEEEEe-cccCCCceEEEcCCCcee
Q psy15734 95 ---QETDRGWYMCQINTV--PMTSQKGYLQVVVPP-RILLDRTSTDVVVREGTEVTLECSA-VGYPEPYVAWRREDGKAI 167 (314)
Q Consensus 95 ---~~~d~G~Y~C~~~~~--~~~~~~~~l~v~~~p-~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~~~W~~~~~~~~ 167 (314)
...|.|.|+|.+.|. ...+....|.+..-+ .+... +.++.+..|+.+.|.|.- .|.|.|.+.|.| ++.++
T Consensus 97 g~~a~~d~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~--prd~~~a~ge~avlEcgpP~ghpeptvSw~K-dg~pl 173 (1281)
T KOG4222|consen 97 GKKAGHDHGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVS--PRDVQAAVGEEAVLECGPPRGHPEPTVSWVK-DGKPL 173 (1281)
T ss_pred CCcccCCCceeEeeecCccceeeecCceEEEEEechhcccC--cccccccccceeEEeccCCCCCCCCcceeec-CCCcc
Confidence 233899999999765 233455566665433 33332 345667789999999986 477999999999 67665
Q ss_pred ecC----------CeeC----------------------------------CCeEEcCCCcceeecCccEEEEEEEeecC
Q psy15734 168 NYN----------GELV----------------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFP 203 (314)
Q Consensus 168 ~~~----------~~~~----------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p 203 (314)
... +.+. +|.|...+.+..+..|..+.+.|.+.|.|
T Consensus 174 ~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP 253 (1281)
T KOG4222|consen 174 DHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDP 253 (1281)
T ss_pred ccccceeEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCC
Confidence 521 2111 77777788888899999999999999999
Q ss_pred CceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCeeEE--E
Q psy15734 204 ASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQI--R 281 (314)
Q Consensus 204 ~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~--~ 281 (314)
.|.+.|.++++... -.++.+.. ++. +|.|.++...|.|.|.|.+.|..|..++...++|+.+|+-.... .
T Consensus 254 ~P~Vrwkk~~~~~P--~~ry~i~~-d~q-----tl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq 325 (1281)
T KOG4222|consen 254 QPTVRWKKDDPSLP--RSRYSILD-DTQ-----TLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQ 325 (1281)
T ss_pred CCceeeeccCCCCC--ccceeeee-ccc-----cccccccCCCcccceeeeccccccccccccceEEecCcccccccCcc
Confidence 99999999655433 33444332 223 99999999999999999999999999999999999987544332 2
Q ss_pred EccccccEeEEEEEeeccCCCccceE
Q psy15734 282 KMSRLHMGAYLCIASNGVVPSVSHRI 307 (314)
Q Consensus 282 ~~~~~~~g~~~C~a~~~~~~~~~w~v 307 (314)
.+.-.....+.|++.+.|+|.+.|.-
T Consensus 326 ~v~lg~~vt~pc~~~gnP~PavfW~k 351 (1281)
T KOG4222|consen 326 KVALGGTVTFPCETLGNPPPAVFWLK 351 (1281)
T ss_pred ccccCceEEeeeecCCCCCcceEEec
Confidence 22233334699999999999999964
No 9
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.86 E-value=2.4e-20 Score=145.57 Aligned_cols=163 Identities=20% Similarity=0.334 Sum_probs=101.0
Q ss_pred CcceEEEcCCcEEEEEEecCC-----------CceEEEEEEcCceeEEEeeeeeeecCcC-----EEEEeCCceeEEEEE
Q psy15734 28 VANVTATVGKEALMACVVENL-----------REYKVAWVKMITQTILSIHHKVVTQNKR-----VSITFNDHRSWFLHL 91 (314)
Q Consensus 28 ~~~~~v~~g~~~~l~C~~~~~-----------~~~~v~W~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~L~i 91 (314)
...+.+.+|+++.|.|.+.+. ..+.+.|+|.+. ..... ..+.+ +.........+.|.|
T Consensus 29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s-~~~v~-----~~~~~~~~~~i~~~~~~~r~~~L~I 102 (227)
T PHA02826 29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDS-LAFVR-----DSGARTKIKKITHNEIGDRSENLWI 102 (227)
T ss_pred cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCe-EEEEE-----cCCCccccccccccceecCCCeEEE
Confidence 457889999999999998552 356999999643 21110 01111 000110112348999
Q ss_pred eeecCCCCeEEEEEEecCC-CcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecc-----cCCCceEEEcCCCc
Q psy15734 92 RDVQETDRGWYMCQINTVP-MTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVG-----YPEPYVAWRREDGK 165 (314)
Q Consensus 92 ~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-----~p~p~~~W~~~~~~ 165 (314)
.+++.+|+|.|+|.+.+.. .....+.|.|..+ .....+.+|+.+.|.|.+.+ .|.|.+.|++ ++.
T Consensus 103 ~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~--------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyK-ng~ 173 (227)
T PHA02826 103 GNVINIDEGIYICTISSGNICEESTIRLTFDSG--------TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYK-NGN 173 (227)
T ss_pred CCCChHHCEEEEEEEEECCcceEEEEEEEEecC--------CccceEecCCCEEEEeeCCCCccccCCCceEEEEE-CCE
Confidence 9999999999999998753 3344445555321 12234567788888887652 3456666666 332
Q ss_pred eeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCC
Q psy15734 166 AINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILS 245 (314)
Q Consensus 166 ~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~ 245 (314)
+ +....++.+. ..++ +|.|.+++.
T Consensus 174 ~--------------------------------------------------l~~~~r~~~~-~~~~-----~L~I~~V~~ 197 (227)
T PHA02826 174 I--------------------------------------------------VLYTDRIQLR-NNNS-----TLVIKSATH 197 (227)
T ss_pred E--------------------------------------------------CCCCCCEEEe-CCCC-----EEEECcCCH
Confidence 2 2222222211 1122 899999999
Q ss_pred CCCeEEEEEEeeCCCC
Q psy15734 246 HQFGSYRCVAVNALGE 261 (314)
Q Consensus 246 ~d~G~Y~C~a~n~~g~ 261 (314)
+|+|.|+|+|......
T Consensus 198 ~DsG~YtC~a~~~~~g 213 (227)
T PHA02826 198 DDSGIYTCNLRFNKNS 213 (227)
T ss_pred HhCEEEEEEEEEeECC
Confidence 9999999999986533
No 10
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.81 E-value=6.1e-19 Score=119.90 Aligned_cols=97 Identities=18% Similarity=0.167 Sum_probs=81.1
Q ss_pred CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734 176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA 255 (314)
Q Consensus 176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a 255 (314)
|.|...+....+..|+.+.|.|.+.|.|+|.+.|+++ +..+....++.+....+ .+.|.|.++..+|+|.|+|.|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kd-g~~l~~~~~~~~~~~~~----~s~L~I~~~~~~D~G~Ytc~a 75 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKF-RKQIQEGEGIKIENTEN----SSKLTITEGQQEHCGCYTLEV 75 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEEC-CEEecCCCcEEEEecCC----eeEEEECCCChhhCEEEEEEE
Confidence 5677778888999999999999999999999999997 44454444554433222 258999999999999999999
Q ss_pred eeCCCCceeEEEEEEEecCCCe
Q psy15734 256 VNALGETDGFIKVYVNLVDGDI 277 (314)
Q Consensus 256 ~n~~g~~~~~~~l~V~~~~~~~ 277 (314)
.|..|...+++.|.|..+|+++
T Consensus 76 ~N~~G~~~~~~~l~V~~~P~pP 97 (98)
T cd05762 76 ENKLGSRQAQVNLTVVDKPDPP 97 (98)
T ss_pred EcCCCceeEEEEEEEecCCCCC
Confidence 9999999999999999988764
No 11
>KOG4194|consensus
Probab=99.77 E-value=5.8e-18 Score=142.99 Aligned_cols=169 Identities=16% Similarity=0.221 Sum_probs=128.9
Q ss_pred cceeEEecCceEEEEEEeccc--CCCceEEEcCCCceeec---C-------------CeeC-------------------
Q psy15734 132 STDVVVREGTEVTLECSAVGY--PEPYVAWRREDGKAINY---N-------------GELV------------------- 174 (314)
Q Consensus 132 ~~~~~~~~g~~~~l~C~~~~~--p~p~~~W~~~~~~~~~~---~-------------~~~~------------------- 174 (314)
|..+....|..++|+|.+.+. .+..+.|.+.+...-.. + +...
T Consensus 510 Pe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grY 589 (873)
T KOG4194|consen 510 PETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRY 589 (873)
T ss_pred chHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCceE
Confidence 455667789999999999873 45589999843221000 0 0000
Q ss_pred ----------------------CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeee--cCCceeeeEeeC
Q psy15734 175 ----------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMII--TGDDYEDSRLIN 230 (314)
Q Consensus 175 ----------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~--~~~~~~~~~~~~ 230 (314)
.|.|...|.+..+..|+...|.|.++|.|.|.|.|.|+++.... ...+..+.. ++
T Consensus 590 QCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmp-ed 668 (873)
T KOG4194|consen 590 QCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMP-ED 668 (873)
T ss_pred EEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecC-CC
Confidence 77888888999999999999999999999999999998775222 222223333 33
Q ss_pred CeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCe--eEEEEccccccEeEEEEEeeccC-CCccce
Q psy15734 231 GYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDI--FQIRKMSRLHMGAYLCIASNGVV-PSVSHR 306 (314)
Q Consensus 231 ~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~--~~~~~~~~~~~g~~~C~a~~~~~-~~~~w~ 306 (314)
. .+.|.++..+|.|.|+|.|.|..|..+++.+|.|.+.|... +....+..++...++|.|.+.++ |.+.|.
T Consensus 669 d-----~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~ 742 (873)
T KOG4194|consen 669 D-----VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWF 742 (873)
T ss_pred C-----EEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCcccccc
Confidence 3 88999999999999999999999999999999999876433 33356667777789999999887 899995
No 12
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.76 E-value=9.7e-18 Score=111.74 Aligned_cols=87 Identities=23% Similarity=0.300 Sum_probs=69.8
Q ss_pred CccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEE
Q psy15734 190 SQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVY 269 (314)
Q Consensus 190 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 269 (314)
|+.+.|.|.+.|.|++.+.|++++..+.....++.+.....++...+.|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 78999999999999999999997533222223454443333444567999999999999999999999999999999999
Q ss_pred EEecCCC
Q psy15734 270 VNLVDGD 276 (314)
Q Consensus 270 V~~~~~~ 276 (314)
|..+|.+
T Consensus 81 V~~~P~~ 87 (88)
T cd05735 81 VQEPPDP 87 (88)
T ss_pred EeCCCCC
Confidence 9987654
No 13
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.74 E-value=2.4e-17 Score=109.90 Aligned_cols=88 Identities=27% Similarity=0.373 Sum_probs=72.9
Q ss_pred CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734 175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV 254 (314)
Q Consensus 175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~ 254 (314)
||.|...+.+..+.+|+++.|.|.+.|.|.|.+.|++++... .... ++. ..++ .|.|.++..+|+|.|+|.
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~-~~~~--~~~-~~~~-----~L~I~~v~~~D~G~Y~C~ 71 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPM-PATA--EIS-MSGA-----VLKIFNIQPEDEGTYECE 71 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCC-CCCC--EEe-cCCC-----EEEECcCChhhCEEEEEE
Confidence 678888888999999999999999999999999999975432 2221 221 1233 899999999999999999
Q ss_pred EeeCCCCceeEEEEEEE
Q psy15734 255 AVNALGETDGFIKVYVN 271 (314)
Q Consensus 255 a~n~~g~~~~~~~l~V~ 271 (314)
|.|..|.....+.|.|+
T Consensus 72 A~N~~G~~~~~~~l~V~ 88 (88)
T cd05851 72 AENIKGKDKHQARVYVQ 88 (88)
T ss_pred EEcCCCceEEEEEEEEC
Confidence 99999999999988773
No 14
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.74 E-value=7e-17 Score=109.84 Aligned_cols=88 Identities=18% Similarity=0.186 Sum_probs=69.3
Q ss_pred CcceeecCccEEEEEEEee-cCCceeEEecCCCeeeecCCceeeeEee-CCeeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734 183 QLEGAFVSQTVELHCHTEA-FPASLNYWTNEKGDMIITGDDYEDSRLI-NGYSCHMTLKIRSILSHQFGSYRCVAVNALG 260 (314)
Q Consensus 183 ~~~~v~~g~~~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g 260 (314)
....+.+|+++.|.|.+.| .|+|.+.|+|+ +..+.......+.... ..+...+.|.|.++..+|+|.|+|.|.|..|
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kd-g~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G 89 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYD-NRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA 89 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeC-CeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence 4567899999999999999 89999999997 5444433332222211 1234456999999999999999999999999
Q ss_pred CceeEEEEEEE
Q psy15734 261 ETDGFIKVYVN 271 (314)
Q Consensus 261 ~~~~~~~l~V~ 271 (314)
..+..+.|.|.
T Consensus 90 ~~~~t~~L~V~ 100 (101)
T cd04975 90 SKSLTFELYVN 100 (101)
T ss_pred cEEEEEEEEEE
Confidence 99999999886
No 15
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.72 E-value=6e-17 Score=107.33 Aligned_cols=83 Identities=16% Similarity=0.159 Sum_probs=66.2
Q ss_pred cceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCce
Q psy15734 184 LEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETD 263 (314)
Q Consensus 184 ~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 263 (314)
.+.+.+|+.+.|.|.+.|.|.|.+.|++++..+.....++.+....+ .+.|.|.++..+|+|.|+|.|.|..|.+.
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~----~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~ 79 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKD----LSSFVIEGAEREDEGVYTITVTNPVGEDH 79 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCC----eEEEEECCCccCcCEEEEEEEEeCCCcEE
Confidence 45688999999999999999999999997543332233444332222 35899999999999999999999999999
Q ss_pred eEEEEEE
Q psy15734 264 GFIKVYV 270 (314)
Q Consensus 264 ~~~~l~V 270 (314)
.++.|.|
T Consensus 80 ~~~~l~V 86 (86)
T cd05894 80 ASLFVKV 86 (86)
T ss_pred EEEEEEC
Confidence 9988865
No 16
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.70 E-value=2e-16 Score=106.69 Aligned_cols=89 Identities=17% Similarity=0.317 Sum_probs=73.2
Q ss_pred CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734 175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV 254 (314)
Q Consensus 175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~ 254 (314)
||.|...+....+.+|+++.|.|.+.|.|.|.+.|+++ +..+....++.+..... .++|.|.++..+|+|.|+|.
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~-g~~l~~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~ 77 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMRE-GQIIVSSQRHQITSTEY----KSTFEISKVQMSDEGNYTVV 77 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEEC-CEECCCCCcEEEEEcCC----eeEEEECCCCcccCEeEEEE
Confidence 67888888889999999999999999999999999997 44444444444432211 24999999999999999999
Q ss_pred EeeCCCCceeEEEE
Q psy15734 255 AVNALGETDGFIKV 268 (314)
Q Consensus 255 a~n~~g~~~~~~~l 268 (314)
|.|..|....++.|
T Consensus 78 a~N~~G~~~~~~~l 91 (92)
T cd05747 78 VENSEGKQEAQFTL 91 (92)
T ss_pred EEcCCCCEeEEEEe
Confidence 99999998888776
No 17
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.70 E-value=8.9e-17 Score=103.12 Aligned_cols=75 Identities=24% Similarity=0.373 Sum_probs=58.2
Q ss_pred EEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734 193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270 (314)
Q Consensus 193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 270 (314)
+.|.|.+.|.|.|.+.|++++..+.....++.+....++ ..+|.|.++..+|+|.|+|.|.|..|.......|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g---~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSG---RVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCC---cEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 479999999999999999974433323344443322222 248999999999999999999999999999988865
No 18
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.70 E-value=3.5e-16 Score=105.56 Aligned_cols=89 Identities=19% Similarity=0.251 Sum_probs=67.6
Q ss_pred EcCCCcceeecCccEEEEEEEeecCC-ceeEEecCCCeeeec-CCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEe
Q psy15734 179 TIPNQLEGAFVSQTVELHCHTEAFPA-SLNYWTNEKGDMIIT-GDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV 256 (314)
Q Consensus 179 ~~~~~~~~v~~g~~~~l~C~~~g~p~-p~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~ 256 (314)
.+.+....+.+|+++.|.|.+.|.|. |.+.|++.++..+.. ..++.+....+ ..++|.|.++..+|+|.|+|.|.
T Consensus 4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~---~~~~L~I~~v~~~D~G~YtC~A~ 80 (96)
T cd05865 4 DIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDD---YSSTLTIYNANIDDAGIYKCVVS 80 (96)
T ss_pred EEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCC---CceEEEEeccChhhCEEEEEEEE
Confidence 34455567899999999999999995 799999855654443 33333222111 13599999999999999999999
Q ss_pred eCC-CCceeEEEEEE
Q psy15734 257 NAL-GETDGFIKVYV 270 (314)
Q Consensus 257 n~~-g~~~~~~~l~V 270 (314)
|.. |...+++.|.|
T Consensus 81 N~~~g~~~~s~~l~v 95 (96)
T cd05865 81 NEDEGESEATVNVKI 95 (96)
T ss_pred cCCCCcEEEEEEEEE
Confidence 996 88888888876
No 19
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.70 E-value=2.3e-16 Score=109.43 Aligned_cols=100 Identities=21% Similarity=0.286 Sum_probs=73.3
Q ss_pred CCeEEcCCCccee----ecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecC-CCCCe
Q psy15734 175 PPMLTIPNQLEGA----FVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSIL-SHQFG 249 (314)
Q Consensus 175 ~p~~~~~~~~~~v----~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~-~~d~G 249 (314)
+|.|..++....+ ..|..+.|.|.+.|.|+|.+.|++++..+.....++.......+....+.|.|.++. .+|.|
T Consensus 4 ~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G 83 (109)
T cd05773 4 APDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYA 83 (109)
T ss_pred ccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCE
Confidence 4566665553222 256899999999999999999999744332233344433333333334689999997 69999
Q ss_pred EEEEEEeeCCCCceeEEEEEEEecC
Q psy15734 250 SYRCVAVNALGETDGFIKVYVNLVD 274 (314)
Q Consensus 250 ~Y~C~a~n~~g~~~~~~~l~V~~~~ 274 (314)
.|+|.|.|..|.+...+.|.|..+|
T Consensus 84 ~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 84 LFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred EEEEEEEeCCccCcEEEEEEecCCC
Confidence 9999999999999999999998765
No 20
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.70 E-value=2.7e-16 Score=107.14 Aligned_cols=93 Identities=17% Similarity=0.276 Sum_probs=69.1
Q ss_pred CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCc---eeeeEeeCCeeeEEEEEEeecCCCCCeEE
Q psy15734 175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDD---YEDSRLINGYSCHMTLKIRSILSHQFGSY 251 (314)
Q Consensus 175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y 251 (314)
.|.|...+....+..|+++.|.|.+.|.|.|.+.|++++.. +..... .++....+ ...+.|.|.++..+|+|.|
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~-~~~~~~~~~~~~~v~~~--~~~~~L~I~~v~~~D~G~Y 78 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRN-ISSEEKTLDGHIVVRSH--ARVSSLTLKYIQYTDAGEY 78 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCcc-ccCCccccCccEEEEcC--ccEEEEEEecCccCcCEEE
Confidence 36666666666677799999999999999999999996433 221111 01111111 1235899999999999999
Q ss_pred EEEEeeCCCCceeEEEEEE
Q psy15734 252 RCVAVNALGETDGFIKVYV 270 (314)
Q Consensus 252 ~C~a~n~~g~~~~~~~l~V 270 (314)
+|.|.|..|.+..++.|.|
T Consensus 79 ~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 79 LCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEEecCCCCeeEEEEEEC
Confidence 9999999999999998875
No 21
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.70 E-value=3.7e-16 Score=105.35 Aligned_cols=86 Identities=20% Similarity=0.254 Sum_probs=68.8
Q ss_pred CCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734 181 PNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG 260 (314)
Q Consensus 181 ~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g 260 (314)
-+....+.+|+++.|.|.+.|.|.|.+.|+++ +..+....++.+....+. .++|.|.++..+|+|.|+|.|.|..|
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~-g~~l~~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G 82 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKN-DQALALSDHYNVKVEQGK---YASLTIKGVSSEDSGKYGIVVKNKYG 82 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCCeEEEEEC-CEECccCCCEEEEEcCCC---EEEEEEccCChhhCEEEEEEEEECCC
Confidence 34556789999999999999999999999997 444444445544332222 24899999999999999999999999
Q ss_pred CceeEEEEEE
Q psy15734 261 ETDGFIKVYV 270 (314)
Q Consensus 261 ~~~~~~~l~V 270 (314)
.....+.|.|
T Consensus 83 ~~~~~~~v~v 92 (92)
T cd05737 83 GETVDVTVSV 92 (92)
T ss_pred cceEEEEEeC
Confidence 9999988765
No 22
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.69 E-value=2.9e-16 Score=105.11 Aligned_cols=87 Identities=25% Similarity=0.410 Sum_probs=71.4
Q ss_pred CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734 175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV 254 (314)
Q Consensus 175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~ 254 (314)
|+.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++.... ..... ...++ .|.|.+++.+|+|.|+|.
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~-~~~~~---~~~~~-----~L~i~~v~~~D~G~Y~C~ 71 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMP-SSAEI---SMSGA-----VLKIPNIQFEDEGTYECE 71 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCC-CccEE---EEeCC-----EEEECCCCcccCEEEEEE
Confidence 5667777788889999999999999999999999999755432 22211 12333 999999999999999999
Q ss_pred EeeCCCCceeEEEEEE
Q psy15734 255 AVNALGETDGFIKVYV 270 (314)
Q Consensus 255 a~n~~g~~~~~~~l~V 270 (314)
|.|..|....+..|.|
T Consensus 72 a~N~~G~~~~~~~l~V 87 (88)
T cd04968 72 AENIKGKDTHQGRIYV 87 (88)
T ss_pred EEECCCcEEEEEEEEE
Confidence 9999999999988877
No 23
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.69 E-value=2.8e-16 Score=106.88 Aligned_cols=91 Identities=27% Similarity=0.464 Sum_probs=70.3
Q ss_pred CCeEEcCC--CcceeecCccEEEEEEEeecCCceeEEecCCCeeeecC-CceeeeEeeCCeeeEEEEEEeecCCCCCeEE
Q psy15734 175 PPMLTIPN--QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITG-DDYEDSRLINGYSCHMTLKIRSILSHQFGSY 251 (314)
Q Consensus 175 ~p~~~~~~--~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y 251 (314)
||.|...+ ....+..|+++.|.|.+.|.|.|.+.|++++ ..+... .++ ....++ +.|.|.++..+|+|.|
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g-~~~~~~~~~~--~~~~~~----~~L~I~~v~~~D~G~Y 73 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDG-EPIESGEEKY--SFNEDG----SEMTILDVDKLDEAEY 73 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECC-EECcCCCCEE--EEeCCC----CEEEECCCChhhCEEE
Confidence 56666544 3446889999999999999999999999974 333322 222 222222 3799999999999999
Q ss_pred EEEEeeCCCCceeEEEEEEEe
Q psy15734 252 RCVAVNALGETDGFIKVYVNL 272 (314)
Q Consensus 252 ~C~a~n~~g~~~~~~~l~V~~ 272 (314)
+|.|.|..|....++.|.|..
T Consensus 74 ~C~a~N~~G~~~~~~~L~V~~ 94 (95)
T cd05730 74 TCIAENKAGEQEAEIHLKVFA 94 (95)
T ss_pred EEEEEcCCCeEEEEEEEEEEe
Confidence 999999999999999998864
No 24
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.68 E-value=1.6e-16 Score=102.13 Aligned_cols=75 Identities=21% Similarity=0.311 Sum_probs=58.1
Q ss_pred EEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734 193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270 (314)
Q Consensus 193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 270 (314)
+.|.|.+.|.|.|.+.|++++..+.....++.+.....+ ...|.|.++..+|+|.|+|.|.|..|..+.+..|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCG---YICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCC---EEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 479999999999999999975544333333433222222 237999999999999999999999999999988865
No 25
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.68 E-value=4.8e-16 Score=105.96 Aligned_cols=87 Identities=17% Similarity=0.158 Sum_probs=67.4
Q ss_pred cceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEee--CCeeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734 184 LEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLI--NGYSCHMTLKIRSILSHQFGSYRCVAVNALGE 261 (314)
Q Consensus 184 ~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~--~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~ 261 (314)
...+..|+.+.|.|.+.|+|+|.+.|+|++ ..+............ ..+...++|.|.++..+|+|.|+|.|.|..|.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg-~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~ 90 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDN-RTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV 90 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECC-EECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence 557889999999999999999999999974 444333322111111 11234469999999999999999999999999
Q ss_pred ceeEEEEEEE
Q psy15734 262 TDGFIKVYVN 271 (314)
Q Consensus 262 ~~~~~~l~V~ 271 (314)
.+.++.|.|.
T Consensus 91 ~~~t~~l~V~ 100 (101)
T cd05859 91 KSYTFALQIQ 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9999998875
No 26
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.68 E-value=2.8e-16 Score=100.47 Aligned_cols=73 Identities=23% Similarity=0.399 Sum_probs=61.4
Q ss_pred CccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEE
Q psy15734 190 SQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVY 269 (314)
Q Consensus 190 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 269 (314)
|+++.|.|.+.|.|.|.+.|+++ +..+....++.+ ..++ +|.|.+++.+|+|.|+|.|.|..|....+..|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~-~~~l~~~~r~~~--~~~g-----~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 72 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKG-TELLVNNSRISI--WDDG-----SLEILNITKLDEGSYTCFAENNRGKANSTGVLS 72 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeC-CEecccCCCEEE--cCCC-----EEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence 68899999999999999999997 444544444433 3445 899999999999999999999999999998886
Q ss_pred E
Q psy15734 270 V 270 (314)
Q Consensus 270 V 270 (314)
|
T Consensus 73 ~ 73 (73)
T cd05852 73 V 73 (73)
T ss_pred C
Confidence 5
No 27
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.68 E-value=6.9e-16 Score=104.01 Aligned_cols=90 Identities=22% Similarity=0.385 Sum_probs=77.6
Q ss_pred CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734 176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA 255 (314)
Q Consensus 176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a 255 (314)
|.|...+....+.+|+++.|.|.+.|.|.|.+.|+++ +..+....++.+.... ..++|.|.++..+|+|.|+|.|
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~-~~~l~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~~ 75 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKN-GRPLTSSQRYQIESDG----GSSSLTIKNVTREDAGTYTCVA 75 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEET-TEEEESSSSEEEEEET----TEEEEEESSESGGGSEEEEEEE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCccccccc-ccceeeeeeeeeeccc----ceeEEccCCCChhhCEEEEEEE
Confidence 5677778889999999999999999999999999997 6666666666665443 2469999999999999999999
Q ss_pred eeCCCCceeEEEEEE
Q psy15734 256 VNALGETDGFIKVYV 270 (314)
Q Consensus 256 ~n~~g~~~~~~~l~V 270 (314)
.|..|.....+.|.|
T Consensus 76 ~n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 76 SNSSGEATASVNLTV 90 (90)
T ss_dssp EETTEEEEEEEEEEE
T ss_pred EECCCEEEEEEEEEC
Confidence 999999999988876
No 28
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.68 E-value=8e-16 Score=102.75 Aligned_cols=87 Identities=22% Similarity=0.321 Sum_probs=68.8
Q ss_pred EcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeC
Q psy15734 179 TIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNA 258 (314)
Q Consensus 179 ~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~ 258 (314)
.+++....+.+|+++.|.|.+.|.|. .+.|+++++..+....++.+. .++. .+.|.|.++..+|+|.|+|.|.|.
T Consensus 4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~--~~g~--~~~L~I~~v~~~D~G~Y~C~A~N~ 78 (92)
T cd05866 4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQ--KEGV--RSRLTIYNANIEDAGIYRCQATDA 78 (92)
T ss_pred EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEE--eCCC--eeEEEEecCChHHCEEEEEEEEcC
Confidence 45566778999999999999999998 899998767666555554442 2221 248999999999999999999999
Q ss_pred CCCc-eeEEEEEE
Q psy15734 259 LGET-DGFIKVYV 270 (314)
Q Consensus 259 ~g~~-~~~~~l~V 270 (314)
.|.. .+++.|.|
T Consensus 79 ~G~~~~~~i~l~~ 91 (92)
T cd05866 79 KGQTQEATVVLEI 91 (92)
T ss_pred CCcEEEEEEEEEE
Confidence 9986 67777765
No 29
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.67 E-value=8.6e-16 Score=104.89 Aligned_cols=91 Identities=16% Similarity=0.249 Sum_probs=68.2
Q ss_pred CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCC-eeeec-----CCceeeeEeeCCeeeEEEEEEeecCCCCC
Q psy15734 175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKG-DMIIT-----GDDYEDSRLINGYSCHMTLKIRSILSHQF 248 (314)
Q Consensus 175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~-~~~~~-----~~~~~~~~~~~~~~~~s~L~i~~~~~~d~ 248 (314)
+|.|.. +.+..+.+|+++.|.|.+.|.|.|.+.|++.+. ..+.. ..++.+ .... ..+.|.|.++..+|+
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v--~~~~--~~~~L~I~~v~~~D~ 76 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEV--KGQH--GESSLHIKDVKLSDS 76 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEE--eecC--CeeEEEEeeCCcCCC
Confidence 456644 556789999999999999999999999998532 22211 112222 1111 134899999999999
Q ss_pred eEEEEEEeeCCCCceeEEEEEE
Q psy15734 249 GSYRCVAVNALGETDGFIKVYV 270 (314)
Q Consensus 249 G~Y~C~a~n~~g~~~~~~~l~V 270 (314)
|.|+|.|.|..|....++.|.|
T Consensus 77 G~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 77 GRYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEEEEEeccCCcceeEEEEeC
Confidence 9999999999999999988865
No 30
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.67 E-value=5.2e-16 Score=104.25 Aligned_cols=87 Identities=17% Similarity=0.205 Sum_probs=67.0
Q ss_pred EcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeC
Q psy15734 179 TIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNA 258 (314)
Q Consensus 179 ~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~ 258 (314)
..++....+.+|+.+.|.|.+.|.|.|.+.|++++. .+.......... ....+.|.|.++..+|.|.|+|.|.|.
T Consensus 4 v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~-~~~~~~~~~~~~----~~~~~~L~I~~v~~~D~g~Y~C~A~N~ 78 (90)
T cd04972 4 VDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGL-IVIQTRTDTLET----TVDIYNLQLSNITSETQTTVTCTAENP 78 (90)
T ss_pred ccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCE-EccCCccEEEEe----cCCEEEEEEecCCcccCEEEEEEEECC
Confidence 345566679999999999999999999999999754 333222211111 111348999999999999999999999
Q ss_pred CCCceeEEEEEE
Q psy15734 259 LGETDGFIKVYV 270 (314)
Q Consensus 259 ~g~~~~~~~l~V 270 (314)
.|....++.|.|
T Consensus 79 ~G~~~~~~~L~v 90 (90)
T cd04972 79 VGQANVSVQVTV 90 (90)
T ss_pred CCceeEEEEEeC
Confidence 999999988764
No 31
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.66 E-value=5.2e-16 Score=100.11 Aligned_cols=74 Identities=28% Similarity=0.517 Sum_probs=60.2
Q ss_pred cCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEE
Q psy15734 189 VSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKV 268 (314)
Q Consensus 189 ~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 268 (314)
+|+++.|.|.+.|.|.|.+.|++++ ..+....++. ...++ +|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g-~~~~~~~~~~--~~~~~-----~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L 72 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGG-SQLSVDRRHL--VLSSG-----TLRISRVALHDQGQYECQAVNIVGSQRTVAQL 72 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECC-EECCCCCCeE--EccCC-----eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEE
Confidence 5899999999999999999999974 3333222222 22333 89999999999999999999999999999888
Q ss_pred EE
Q psy15734 269 YV 270 (314)
Q Consensus 269 ~V 270 (314)
.|
T Consensus 73 ~V 74 (74)
T cd05745 73 TV 74 (74)
T ss_pred eC
Confidence 65
No 32
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.66 E-value=1.1e-15 Score=104.23 Aligned_cols=92 Identities=20% Similarity=0.274 Sum_probs=67.8
Q ss_pred CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCc---eeeeEeeCCeeeEEEEEEeecCCCCCeEE
Q psy15734 175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDD---YEDSRLINGYSCHMTLKIRSILSHQFGSY 251 (314)
Q Consensus 175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y 251 (314)
+|.|. ...+..+.+|+++.|.|.+.|.|.|.+.|++++.. +..... .+...... ...+.|.|.+++.+|+|.|
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y 77 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRN-FSEGDKSLDGRIVVRGH--ARVSSLTLKDVQLTDAGRY 77 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcc-cCCCCccccceEEEeCC--ccEEEEEECcCCcCcCEEe
Confidence 35554 34456789999999999999999999999997532 221111 01111111 1235899999999999999
Q ss_pred EEEEeeCCCCceeEEEEEE
Q psy15734 252 RCVAVNALGETDGFIKVYV 270 (314)
Q Consensus 252 ~C~a~n~~g~~~~~~~l~V 270 (314)
+|.|.|..|....++.|+|
T Consensus 78 ~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 78 DCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEEEEeCCCCcEEEEEEeC
Confidence 9999999999999888865
No 33
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.66 E-value=2.7e-15 Score=101.96 Aligned_cols=94 Identities=17% Similarity=0.314 Sum_probs=75.3
Q ss_pred CceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeE
Q psy15734 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGW 101 (314)
Q Consensus 22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 101 (314)
|.|...++.+.+..|+.+.|.|.+.|.+.+.+.|+|++ ..+ ..+.++.+...... ..|.|.++..+|+|.
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg-~~l--------~~~~~~~~~~~~~~-s~L~I~~~~~~D~G~ 70 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFR-KQI--------QEGEGIKIENTENS-SKLTITEGQQEHCGC 70 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECC-EEe--------cCCCcEEEEecCCe-eEEEECCCChhhCEE
Confidence 67888899999999999999999999999999999954 433 22335555443322 379999999999999
Q ss_pred EEEEEecC-CCcceeEEEEEEeCCc
Q psy15734 102 YMCQINTV-PMTSQKGYLQVVVPPR 125 (314)
Q Consensus 102 Y~C~~~~~-~~~~~~~~l~v~~~p~ 125 (314)
|+|.+.|. |.....+.|.|.++|.
T Consensus 71 Ytc~a~N~~G~~~~~~~l~V~~~P~ 95 (98)
T cd05762 71 YTLEVENKLGSRQAQVNLTVVDKPD 95 (98)
T ss_pred EEEEEEcCCCceeEEEEEEEecCCC
Confidence 99999876 6667788899988763
No 34
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.66 E-value=1.1e-15 Score=99.16 Aligned_cols=75 Identities=24% Similarity=0.372 Sum_probs=59.4
Q ss_pred CccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEE
Q psy15734 190 SQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVY 269 (314)
Q Consensus 190 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 269 (314)
|+++.|.|.+.|.|.|.+.|+++ +..+............++ .|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~-g~~i~~~~~~~~~~~~~~-----~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 74 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSIN-GAPIEGTDPDPRRHVSSG-----ALILTDVQPSDTAVYQCEARNRHGNLLANAHVH 74 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEEC-CEECCCCCCCceEEeeCC-----EEEECCCChhhCEEEEEEEECCCCeEEEEEEEE
Confidence 78999999999999999999996 443332221111122334 899999999999999999999999999988887
Q ss_pred E
Q psy15734 270 V 270 (314)
Q Consensus 270 V 270 (314)
|
T Consensus 75 V 75 (76)
T cd05867 75 V 75 (76)
T ss_pred E
Confidence 6
No 35
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.66 E-value=5.7e-16 Score=96.55 Aligned_cols=66 Identities=20% Similarity=0.306 Sum_probs=54.2
Q ss_pred EEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEE
Q psy15734 193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN 271 (314)
Q Consensus 193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 271 (314)
+.|.|.+.|.|.|.+.|+|++ ..+... .. .+.|.|.++..+|+|.|+|.|+|..|..++++.|+|.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg-~~l~~~-------~~-----~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDG-KLISGK-------HS-----QHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECC-EECccc-------CC-----cCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 479999999999999999974 433211 01 1399999999999999999999999998888888764
No 36
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.65 E-value=9.4e-16 Score=98.90 Aligned_cols=75 Identities=23% Similarity=0.327 Sum_probs=57.7
Q ss_pred EEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734 193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270 (314)
Q Consensus 193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 270 (314)
+.|.|.+.|.|.|.+.|++++..+.....++.+.....+ ..+|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCG---RICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCC---eEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 479999999999999999975433323334333222222 237999999999999999999999999999888865
No 37
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.65 E-value=1.3e-15 Score=101.04 Aligned_cols=83 Identities=19% Similarity=0.277 Sum_probs=67.8
Q ss_pred EcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeC
Q psy15734 179 TIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNA 258 (314)
Q Consensus 179 ~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~ 258 (314)
...+.+..+..|+++.|.|.+.|.|.|.+.|++++ ..+....++.. .++ .|.|.++..+|+|.|+|.|.|.
T Consensus 3 ~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g-~~~~~~~~~~~---~~~-----~L~i~~~~~~D~G~Y~C~a~N~ 73 (85)
T cd05728 3 LKVISDTEADIGSSLRWECKASGNPRPAYRWLKNG-QPLASENRIEV---EAG-----DLRITKLSLSDSGMYQCVAENK 73 (85)
T ss_pred cccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECC-EECCCCCeEEE---eCC-----EEEEeeCCHHHCEEEEEEEECC
Confidence 34567788999999999999999999999999974 44433333322 333 8999999999999999999999
Q ss_pred CCCceeEEEEEE
Q psy15734 259 LGETDGFIKVYV 270 (314)
Q Consensus 259 ~g~~~~~~~l~V 270 (314)
.|....++.|.|
T Consensus 74 ~G~~~~~~~l~V 85 (85)
T cd05728 74 HGTIYASAELAV 85 (85)
T ss_pred CCeEEEEEEEEC
Confidence 999998888765
No 38
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.64 E-value=1.8e-15 Score=97.93 Aligned_cols=75 Identities=17% Similarity=0.194 Sum_probs=59.3
Q ss_pred CccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEE
Q psy15734 190 SQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVY 269 (314)
Q Consensus 190 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 269 (314)
|+++.|.|.+.|.|.|.+.|++++ ..+...........+++ .|.|.+++.+|+|.|+|.|.|..|...+++.|.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g-~~i~~~~~~~~~~~~~~-----~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 74 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNG-VPIEIAPTDPSRKVDGD-----TIIFSKVQERSSAVYQCNASNEYGYLLANAFVN 74 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECC-EEccccCCCceEEecCC-----EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEE
Confidence 788999999999999999999974 43322221111122333 889999999999999999999999999999987
Q ss_pred E
Q psy15734 270 V 270 (314)
Q Consensus 270 V 270 (314)
|
T Consensus 75 v 75 (76)
T cd05868 75 V 75 (76)
T ss_pred e
Confidence 7
No 39
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.63 E-value=7.1e-15 Score=98.86 Aligned_cols=89 Identities=20% Similarity=0.327 Sum_probs=66.6
Q ss_pred EEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEee
Q psy15734 178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN 257 (314)
Q Consensus 178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n 257 (314)
+.+.+....+..|+++.|.|.+.|.|+ .+.|++.++..+....++..... + ...++|.|.+++.+|+|.|+|.|.|
T Consensus 3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~-~--~~~~~L~I~~v~~~D~G~Y~C~A~N 78 (92)
T cd04977 3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQN-D--DVRSTLTIYNANIEDAGIYKCVATD 78 (92)
T ss_pred EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeC-C--CCEEEEEEecCCcccCEEEEEEEEc
Confidence 345566678999999999999999975 99999866665554444433221 1 1245999999999999999999999
Q ss_pred CCC-CceeEEEEEE
Q psy15734 258 ALG-ETDGFIKVYV 270 (314)
Q Consensus 258 ~~g-~~~~~~~l~V 270 (314)
..| ....++.|.|
T Consensus 79 ~~g~~~~~sv~l~~ 92 (92)
T cd04977 79 AKGTESEATVNLKI 92 (92)
T ss_pred CCCCcceeEEEEEC
Confidence 965 4567777654
No 40
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.63 E-value=4.3e-15 Score=99.91 Aligned_cols=86 Identities=19% Similarity=0.216 Sum_probs=68.3
Q ss_pred CCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734 181 PNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG 260 (314)
Q Consensus 181 ~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g 260 (314)
.|....+.+|+++.|.|.+.|.|.|.+.|++++. .+....++......+. .++|.|.++..+|+|.|+|.|.|..|
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~-~~~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G 82 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQ-DIELSEHYSVKLEQGK---YASLTIKGVTSEDSGKYSINVKNKYG 82 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCE-ECCCCCCEEEEEcCCC---EEEEEECCCChhhCEEEEEEEEeCCC
Confidence 4556788999999999999999999999999754 3434444443332222 24799999999999999999999999
Q ss_pred CceeEEEEEE
Q psy15734 261 ETDGFIKVYV 270 (314)
Q Consensus 261 ~~~~~~~l~V 270 (314)
.+..++.|+|
T Consensus 83 ~~~~~~~v~~ 92 (92)
T cd05891 83 GETVDVTVSV 92 (92)
T ss_pred ceeeEEEEEC
Confidence 9999988865
No 41
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.62 E-value=3.4e-15 Score=97.08 Aligned_cols=75 Identities=24% Similarity=0.268 Sum_probs=59.7
Q ss_pred CccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEE
Q psy15734 190 SQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVY 269 (314)
Q Consensus 190 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 269 (314)
|+++.|.|.+.|.|.|.+.|++++ ..+............++ .|.|.+++.+|+|.|+|.|.|..|...+++.|.
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g-~~~~~~~~~~~~~~~~~-----~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 74 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNG-VPIEELPPDPRRRVDGG-----TLILSNVQPNDTAVYQCNASNVHGYLLANAFVH 74 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECC-EECCCCCCcceEEccCC-----EEEECCCChhhCEEEEEEEEccCCeEEEeEEEE
Confidence 789999999999999999999964 43333222111222333 899999999999999999999999999999887
Q ss_pred E
Q psy15734 270 V 270 (314)
Q Consensus 270 V 270 (314)
|
T Consensus 75 V 75 (76)
T cd04978 75 V 75 (76)
T ss_pred E
Confidence 7
No 42
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.62 E-value=4.1e-15 Score=96.00 Aligned_cols=74 Identities=19% Similarity=0.255 Sum_probs=58.9
Q ss_pred cEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734 192 TVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270 (314)
Q Consensus 192 ~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 270 (314)
.+.|.|.+.|.|.|.+.|++++ ..+....++.+..... .+.|.|.++..+|+|.|+|.|.|..|.++.++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g-~~l~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDG-KPLKLSGRVQIETTAS----STSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECC-EEcCCCCeEEEEECCC----eEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 4789999999999999999974 4443444444332222 358999999999999999999999999999988865
No 43
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.62 E-value=8.5e-15 Score=99.97 Aligned_cols=93 Identities=20% Similarity=0.312 Sum_probs=69.3
Q ss_pred CCeEEcCCCcceeecCccEEEEEEEeecCCc-eeEEecCCCeeeec-CCceeeeEeeCCeeeEEEEEEeecCCCC-CeEE
Q psy15734 175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPAS-LNYWTNEKGDMIIT-GDDYEDSRLINGYSCHMTLKIRSILSHQ-FGSY 251 (314)
Q Consensus 175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~s~L~i~~~~~~d-~G~Y 251 (314)
||.|.. +....+.+|+++.|.|.+.|.|.| .+.|++++..+... ..++.+......+...++|.|.++..+| .|.|
T Consensus 2 pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 2 PPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred CCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 566654 445678999999999999999999 59999975433222 2345444322223345689999999955 8999
Q ss_pred EEEEeeCCCCceeEEEE
Q psy15734 252 RCVAVNALGETDGFIKV 268 (314)
Q Consensus 252 ~C~a~n~~g~~~~~~~l 268 (314)
+|.|.|..|.+...+.|
T Consensus 81 ~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 81 NCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEcCCCcccEEEEe
Confidence 99999999999888876
No 44
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.62 E-value=4.4e-15 Score=94.81 Aligned_cols=71 Identities=20% Similarity=0.465 Sum_probs=57.4
Q ss_pred cEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734 192 TVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270 (314)
Q Consensus 192 ~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 270 (314)
++.|.|.+.|.|.|.+.|++++. .+....++.+ ..++ .|.|.++..+|+|.|+|.|.|..|...+++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~-~~~~~~~~~~--~~~~-----~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGD-MVIPSDYFKI--VKEH-----NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCe-ECCCCCCEEE--EecC-----CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 47899999999999999999754 3434444332 2333 7888999999999999999999999999988865
No 45
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.61 E-value=1.1e-14 Score=100.30 Aligned_cols=95 Identities=21% Similarity=0.222 Sum_probs=67.2
Q ss_pred CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecC---CceeeeEeeCCeeeEEEEEEeecCCCCCeEE
Q psy15734 175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITG---DDYEDSRLINGYSCHMTLKIRSILSHQFGSY 251 (314)
Q Consensus 175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~---~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y 251 (314)
||.|...+....+.+|+++.|.|.+.|.|.|.+.|++++. .+... .........++......+.+.++..+|+|.|
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~-~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y 79 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQ-PLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVY 79 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCE-ECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEE
Confidence 6788888888999999999999999999999999999743 33221 1111122233311111222234478999999
Q ss_pred EEEEeeCCCC-ceeEEEEEE
Q psy15734 252 RCVAVNALGE-TDGFIKVYV 270 (314)
Q Consensus 252 ~C~a~n~~g~-~~~~~~l~V 270 (314)
+|.|.|..|. .++.+.|.|
T Consensus 80 ~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 80 VCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEccccceecceEEEEe
Confidence 9999999998 577777766
No 46
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.61 E-value=6.1e-15 Score=94.90 Aligned_cols=74 Identities=20% Similarity=0.253 Sum_probs=55.5
Q ss_pred EEEEEeecCCceeEEecCCCeeeecCCceeeeEe-eCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEE
Q psy15734 195 LHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRL-INGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVY 269 (314)
Q Consensus 195 l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 269 (314)
|.|.+.|+|.|++.|+++ +..+........... .......+.|.|.++..+|+|.|+|.|.|..|.+.+++.+.
T Consensus 3 i~~~v~G~P~Pti~W~kn-g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHE-GAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEEC-CEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 789999999999999997 444444433222111 11112345899999999999999999999999999988764
No 47
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.61 E-value=5.2e-15 Score=98.43 Aligned_cols=82 Identities=20% Similarity=0.352 Sum_probs=62.8
Q ss_pred ceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCcee
Q psy15734 185 EGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDG 264 (314)
Q Consensus 185 ~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 264 (314)
..+.+|+.+.|.|.+.|.|.|.+.|++++ ..+....+........ ....|.|.++..+|+|.|+|.|.|..|...+
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g-~~l~~~~~~~~~~~~~---~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~ 79 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNG-KEFKQEHRIGGYKVRN---QHWSLIMESVVPSDKGNYTCVVENEYGSINH 79 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECC-EECCCCCceeeeEEeC---CceEEEEccCCcccCEEEEEEEEeCCCEEEE
Confidence 45788999999999999999999999974 4333332221111111 1237999999999999999999999999999
Q ss_pred EEEEEE
Q psy15734 265 FIKVYV 270 (314)
Q Consensus 265 ~~~l~V 270 (314)
++.|.|
T Consensus 80 ~~~l~v 85 (85)
T cd05857 80 TYHLDV 85 (85)
T ss_pred EEEEEC
Confidence 988865
No 48
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.61 E-value=5.1e-15 Score=95.21 Aligned_cols=73 Identities=21% Similarity=0.403 Sum_probs=60.3
Q ss_pred CccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEE
Q psy15734 190 SQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVY 269 (314)
Q Consensus 190 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 269 (314)
|+++.|.|.+.|.|.|.+.|++++ ..+....++. ...++ .|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~-~~~~~~~~~~--~~~~~-----~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 72 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGT-ELLTNSSRIC--IWPDG-----SLEILNVTKSDEGKYTCFAENFFGKANSTGSLS 72 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECC-EEcccCCCEE--ECCCC-----eEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence 688999999999999999999974 4443333333 23344 899999999999999999999999999998886
Q ss_pred E
Q psy15734 270 V 270 (314)
Q Consensus 270 V 270 (314)
|
T Consensus 73 V 73 (73)
T cd04969 73 V 73 (73)
T ss_pred C
Confidence 5
No 49
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.61 E-value=6.7e-15 Score=95.06 Aligned_cols=74 Identities=27% Similarity=0.452 Sum_probs=60.6
Q ss_pred CccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEE
Q psy15734 190 SQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVY 269 (314)
Q Consensus 190 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 269 (314)
|+++.|.|.+.|.|.|.+.|+++++..+....+.. ...++ .|.|.++..+|+|.|+|.|.|..|..+..+.|+
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~--~~~~~-----~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTL--VYDNG-----TLDILITTVKDTGSFTCIASNAAGEATATVELH 73 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEE--EecCC-----EEEEEECChhhCEEEEEEEECCCCeEEEEEEEE
Confidence 78999999999999999999986666554433322 23344 899999999999999999999999998888876
Q ss_pred E
Q psy15734 270 V 270 (314)
Q Consensus 270 V 270 (314)
|
T Consensus 74 v 74 (74)
T cd05764 74 I 74 (74)
T ss_pred C
Confidence 5
No 50
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.61 E-value=9e-15 Score=98.19 Aligned_cols=79 Identities=22% Similarity=0.340 Sum_probs=62.4
Q ss_pred CccEEEEEEEeecCCceeEEecCCCeeeec-----CCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCcee
Q psy15734 190 SQTVELHCHTEAFPASLNYWTNEKGDMIIT-----GDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDG 264 (314)
Q Consensus 190 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-----~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 264 (314)
|+++.|.|.+.|.|.|.+.|++++...+.. ....+.....++ .|.|.++..+|+|.|+|.|.|..|....
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~-----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 75 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTG-----DLTITNVQRSDVGYYICQTLNVAGSILT 75 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCC-----eEEEeeCChhhCEEEEEEEEcCCCceEE
Confidence 789999999999999999999976543221 011122222333 8999999999999999999999999999
Q ss_pred EEEEEEEec
Q psy15734 265 FIKVYVNLV 273 (314)
Q Consensus 265 ~~~l~V~~~ 273 (314)
.+.|.|...
T Consensus 76 ~~~l~V~~~ 84 (90)
T cd05726 76 KAYLEVTDV 84 (90)
T ss_pred EEEEEEeec
Confidence 999999864
No 51
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.60 E-value=1.4e-14 Score=95.80 Aligned_cols=81 Identities=16% Similarity=0.248 Sum_probs=60.1
Q ss_pred ccEEEEEEEeecCCc--eeEEecCCCeeeecC--CceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEE
Q psy15734 191 QTVELHCHTEAFPAS--LNYWTNEKGDMIITG--DDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFI 266 (314)
Q Consensus 191 ~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 266 (314)
+++.|.|.+.|+|.| .+.|++++..+.... .++...... ...++|.|.+++.+|+|.|+|.|.|..|...+++
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~ 77 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVK---ETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASA 77 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEec---ceEeEEEEccCChhhCeEEEEEEecCCCCEEEEE
Confidence 468999999999987 578999743332221 122111111 1124999999999999999999999999999999
Q ss_pred EEEEEecC
Q psy15734 267 KVYVNLVD 274 (314)
Q Consensus 267 ~l~V~~~~ 274 (314)
.|.|..+|
T Consensus 78 ~L~V~~~P 85 (85)
T cd05854 78 TLVVRGPP 85 (85)
T ss_pred EEEEECCC
Confidence 99998654
No 52
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.60 E-value=8.7e-15 Score=98.12 Aligned_cols=81 Identities=22% Similarity=0.330 Sum_probs=58.1
Q ss_pred CccEEEEEEEeecCCceeEEecCC---CeeeecCC-ce-eeeEe--eCC-eeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734 190 SQTVELHCHTEAFPASLNYWTNEK---GDMIITGD-DY-EDSRL--ING-YSCHMTLKIRSILSHQFGSYRCVAVNALGE 261 (314)
Q Consensus 190 g~~~~l~C~~~g~p~p~~~W~~~~---~~~~~~~~-~~-~~~~~--~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~ 261 (314)
|+++.|.|.+.|.|.|.+.|++++ +..+.... .. ..... ... ......|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 678999999999999999999963 22211111 11 11110 000 011238999999999999999999999999
Q ss_pred ceeEEEEEE
Q psy15734 262 TDGFIKVYV 270 (314)
Q Consensus 262 ~~~~~~l~V 270 (314)
..+++.|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 999999887
No 53
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.59 E-value=7.2e-15 Score=95.10 Aligned_cols=73 Identities=18% Similarity=0.304 Sum_probs=55.8
Q ss_pred EEEEEEEeecCCceeEEecCCCeeeecCCceeeeE-eeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734 193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSR-LINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270 (314)
Q Consensus 193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 270 (314)
+.|.|.+.|.|.|.+.|++++..........+... ..++ .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~-----~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDD-----VFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCC-----EEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 36899999999999999997543222111111211 1223 8999999999999999999999999999988877
No 54
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.59 E-value=1.5e-14 Score=97.12 Aligned_cols=81 Identities=21% Similarity=0.226 Sum_probs=58.9
Q ss_pred CccEEEEEEEeecCCceeEEecCC---CeeeecCCceeeeEee-CCe----eeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734 190 SQTVELHCHTEAFPASLNYWTNEK---GDMIITGDDYEDSRLI-NGY----SCHMTLKIRSILSHQFGSYRCVAVNALGE 261 (314)
Q Consensus 190 g~~~~l~C~~~g~p~p~~~W~~~~---~~~~~~~~~~~~~~~~-~~~----~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~ 261 (314)
|+++.|.|.+.|.|.|.+.|++++ +..+............ .+. ...+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 789999999999999999999852 2222211111111111 100 11258999999999999999999999999
Q ss_pred ceeEEEEEE
Q psy15734 262 TDGFIKVYV 270 (314)
Q Consensus 262 ~~~~~~l~V 270 (314)
..+++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 999999887
No 55
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.59 E-value=1.9e-14 Score=95.88 Aligned_cols=86 Identities=15% Similarity=0.313 Sum_probs=65.9
Q ss_pred CCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734 21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG 100 (314)
Q Consensus 21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 100 (314)
+|.|...+.+..+.+|+++.|.|.+.|.|.+.+.|++++.. + ....++.. . ...|.|.+++.+|+|
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~-~--------~~~~~~~~--~---~~~L~I~~v~~~D~G 66 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEP-M--------PATAEISM--S---GAVLKIFNIQPEDEG 66 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcC-C--------CCCCEEec--C---CCEEEECcCChhhCE
Confidence 58888899999999999999999999999999999996532 1 11112221 1 127999999999999
Q ss_pred EEEEEEecC-CCcceeEEEEE
Q psy15734 101 WYMCQINTV-PMTSQKGYLQV 120 (314)
Q Consensus 101 ~Y~C~~~~~-~~~~~~~~l~v 120 (314)
.|+|.+.|. |.....+.|.|
T Consensus 67 ~Y~C~A~N~~G~~~~~~~l~V 87 (88)
T cd05851 67 TYECEAENIKGKDKHQARVYV 87 (88)
T ss_pred EEEEEEEcCCCceEEEEEEEE
Confidence 999999876 55555555554
No 56
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.59 E-value=8e-15 Score=93.61 Aligned_cols=70 Identities=26% Similarity=0.414 Sum_probs=55.8
Q ss_pred EEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734 193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270 (314)
Q Consensus 193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 270 (314)
+.|.|.+.|.|.|.+.|+++++... .. +.. ....++ .|.|.++..+|+|.|+|.|.|..|...+++.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~-~~-~~~-~~~~~~-----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLS-PN-RTK-KLNNNK-----TLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCC-CC-cee-EEcCCC-----EEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 4799999999999999999865432 21 111 112333 9999999999999999999999999999988876
No 57
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.58 E-value=5.8e-14 Score=116.86 Aligned_cols=162 Identities=17% Similarity=0.205 Sum_probs=103.3
Q ss_pred EEecCceEEEEEEe-----cccCCCceEEEcCCCc---eeec-CCe-eC-------------------------------
Q psy15734 136 VVREGTEVTLECSA-----VGYPEPYVAWRREDGK---AINY-NGE-LV------------------------------- 174 (314)
Q Consensus 136 ~~~~g~~~~l~C~~-----~~~p~p~~~W~~~~~~---~~~~-~~~-~~------------------------------- 174 (314)
.+.+|+.+.|.|.+ .|+|.+.+.|++.++. .... .+. +.
T Consensus 37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V 116 (326)
T PHA02785 37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADNDRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLNLTI 116 (326)
T ss_pred hhhcCCCEEEECCCccccccCCCCceEEEEECCCccceEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEEEEE
Confidence 34579999999997 5888899999994322 1111 111 11
Q ss_pred ----CCeEEcCCCcceeecCccEEEEEE-----EeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCC
Q psy15734 175 ----PPMLTIPNQLEGAFVSQTVELHCH-----TEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILS 245 (314)
Q Consensus 175 ----~p~~~~~~~~~~v~~g~~~~l~C~-----~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~ 245 (314)
++.+...+....+.+|..+.|.|. ..+.|+|.+.|+++. . ....++ ....++ .|.|.+++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~-~--~~~~r~--~~~~~~-----~L~i~~v~~ 186 (326)
T PHA02785 117 VSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHR-R--LRNKRL--KQRTPG-----IITIEDVRK 186 (326)
T ss_pred EecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCC-c--cCCcce--EecCCC-----eEEEeecCh
Confidence 111211223345678999999997 346789999998752 2 222222 222333 899999999
Q ss_pred CCCeEEEEEEeeCCCCcee----EEEEEEEecCCCe-eEE---EEccccccEeEEEEEeeccCC---CccceE
Q psy15734 246 HQFGSYRCVAVNALGETDG----FIKVYVNLVDGDI-FQI---RKMSRLHMGAYLCIASNGVVP---SVSHRI 307 (314)
Q Consensus 246 ~d~G~Y~C~a~n~~g~~~~----~~~l~V~~~~~~~-~~~---~~~~~~~~g~~~C~a~~~~~~---~~~w~v 307 (314)
+|.|.|+|.|.|..|.... .+.|.|..+..++ +.. ..+..++...+.|.|.+.|++ .+.|..
T Consensus 187 ~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~k 259 (326)
T PHA02785 187 NDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWIS 259 (326)
T ss_pred hhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEE
Confidence 9999999999999887643 3345554322222 111 122334556799999998864 788965
No 58
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.58 E-value=1.3e-14 Score=94.74 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=60.1
Q ss_pred ccEEEEEEEeec--CCceeEEecCCCeeeec--CCceeeeE--eeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCcee
Q psy15734 191 QTVELHCHTEAF--PASLNYWTNEKGDMIIT--GDDYEDSR--LINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDG 264 (314)
Q Consensus 191 ~~~~l~C~~~g~--p~p~~~W~~~~~~~~~~--~~~~~~~~--~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 264 (314)
+++.|.|.+.+. +++.+.|++++..+... ..++.... ..+ +.|.|.+++.+|+|+|+|.|.|..+...+
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~-----~~L~I~nv~~~dsG~YtC~a~n~~~~~~a 75 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSA-----GDLMIRSIQLKHAGKYVCMVQTSVDKLSA 75 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCC-----CcEEEecCCHHHCEEEEEEEEcccCceEE
Confidence 478999999874 47899999975444321 22322211 122 38999999999999999999999999999
Q ss_pred EEEEEEEecC
Q psy15734 265 FIKVYVNLVD 274 (314)
Q Consensus 265 ~~~l~V~~~~ 274 (314)
+..|.|..+|
T Consensus 76 ~a~L~V~~pP 85 (85)
T cd05853 76 AADLIVRGPP 85 (85)
T ss_pred EEEEEEecCC
Confidence 9999998764
No 59
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.58 E-value=2.4e-14 Score=93.38 Aligned_cols=75 Identities=17% Similarity=0.193 Sum_probs=56.3
Q ss_pred EEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeC---CeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEE
Q psy15734 194 ELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLIN---GYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVY 269 (314)
Q Consensus 194 ~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 269 (314)
.|.|.+.|.|.|.+.|+++ +..+............. .....+.|.|.++..+|+|.|+|.|.|..|.+.+++.|.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~-g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHN-GAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeEeeCCCcEEEEEC-CEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 3789999999999999996 44444443332221111 122345899999999999999999999999999988764
No 60
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.58 E-value=1.5e-14 Score=94.29 Aligned_cols=76 Identities=24% Similarity=0.350 Sum_probs=57.9
Q ss_pred CccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEE
Q psy15734 190 SQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVY 269 (314)
Q Consensus 190 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 269 (314)
|+++.|.|.+.|.|.|.+.|+++++. +....++.+.... ..+.|.|.++..+|+|.|+|.|.|..|.......+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~-~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~ 75 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGH-VPDSARVSITSEG----GYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI 75 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeE-CCCCCCEEEEECC----CEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence 78999999999999999999997443 3333344332211 124899999999999999999999999886655544
Q ss_pred E
Q psy15734 270 V 270 (314)
Q Consensus 270 V 270 (314)
+
T Consensus 76 ~ 76 (78)
T cd05743 76 L 76 (78)
T ss_pred E
Confidence 3
No 61
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.58 E-value=1.8e-14 Score=96.83 Aligned_cols=86 Identities=21% Similarity=0.344 Sum_probs=62.5
Q ss_pred CCeEEcCCCcceeecC---ccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecC-CCCCeE
Q psy15734 175 PPMLTIPNQLEGAFVS---QTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSIL-SHQFGS 250 (314)
Q Consensus 175 ~p~~~~~~~~~~v~~g---~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~-~~d~G~ 250 (314)
.|.|...|....+.++ ..+.|.|.+.|.|.|.+.|++++..+.....++. ..++ .|.|.++. .+|+|.
T Consensus 1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~---~~~g-----~L~I~~~~~~~D~G~ 72 (93)
T cd05849 1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYS---MVGG-----NLVINNPDKYKDAGR 72 (93)
T ss_pred CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEE---EECC-----EEEECcCCcCCCCEE
Confidence 3666666666655544 4899999999999999999997554322233332 2344 89999885 689999
Q ss_pred EEEEEeeCCCCce-eEEEE
Q psy15734 251 YRCVAVNALGETD-GFIKV 268 (314)
Q Consensus 251 Y~C~a~n~~g~~~-~~~~l 268 (314)
|+|.|.|..|... +.+.|
T Consensus 73 Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 73 YVCIVSNIYGKVRSREATL 91 (93)
T ss_pred EEEEEEeCcceEEEccEEE
Confidence 9999999999774 34444
No 62
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.57 E-value=1.1e-14 Score=92.73 Aligned_cols=70 Identities=19% Similarity=0.345 Sum_probs=56.0
Q ss_pred EEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEE
Q psy15734 193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN 271 (314)
Q Consensus 193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 271 (314)
+.|.|.+.|.|+|.+.|+++ +..+....++ ..... +|.|.++..+|+|.|+|.|.|..|...+++.+.|.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~-g~~l~~~~~~---~~~~~-----~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKN-GKLISEKNRT---KKSGH-----SLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEEC-CEECCCCCEE---EcCCC-----EEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 46999999999999999996 4444433222 12223 89999999999999999999999998888887764
No 63
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.57 E-value=1.5e-14 Score=93.91 Aligned_cols=71 Identities=27% Similarity=0.455 Sum_probs=53.0
Q ss_pred EEEEEEEeecCCceeEEecCCCeeeecCC-ceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCce--eEEEEE
Q psy15734 193 VELHCHTEAFPASLNYWTNEKGDMIITGD-DYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETD--GFIKVY 269 (314)
Q Consensus 193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~ 269 (314)
++|.|.+.|.|.|.+.|++++. .+.... .+.+ ....+ .|.|.++..+|+|.|+|.|.|..|... ..+.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~-~l~~~~~~~~~-~~~~~-----~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~ 73 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGT-PLSDGQGNYSV-SSKER-----TLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLS 73 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCE-ECCCCCccEEE-eCCCC-----EEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEE
Confidence 5799999999999999999744 333322 2222 11222 899999999999999999999999874 455555
Q ss_pred E
Q psy15734 270 V 270 (314)
Q Consensus 270 V 270 (314)
|
T Consensus 74 v 74 (77)
T cd05760 74 I 74 (77)
T ss_pred E
Confidence 5
No 64
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.57 E-value=1.4e-14 Score=92.06 Aligned_cols=69 Identities=30% Similarity=0.527 Sum_probs=55.8
Q ss_pred EEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734 193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270 (314)
Q Consensus 193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 270 (314)
+.|.|.+.|.|+|.+.|+++++.. ...++.. ..++ .|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~--~~~~~~~--~~~~-----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGEL--PKGRAEI--LDDK-----SLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccC--CCCcEEE--eeCC-----EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 479999999999999999985433 2223322 2333 8999999999999999999999999998888765
No 65
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.57 E-value=4e-14 Score=95.55 Aligned_cols=86 Identities=26% Similarity=0.353 Sum_probs=61.8
Q ss_pred CeEEcCCCcceee---cCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecC-CCCCeEE
Q psy15734 176 PMLTIPNQLEGAF---VSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSIL-SHQFGSY 251 (314)
Q Consensus 176 p~~~~~~~~~~v~---~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~-~~d~G~Y 251 (314)
|.|...+.+..+. .|+.+.|.|.+.|.|.|.+.|++++ ..+......... ..++ .|.|.++. .+|+|.|
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g-~~l~~~~~~~~~-~~~g-----~L~i~~~~~~~D~G~Y 74 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNG-TEIDTESDYRYS-LIDG-----NLIISNPSEVKDSGRY 74 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECC-eECccCCCceEE-eeCC-----eEEEccCCccCcCEEE
Confidence 5566666665443 4789999999999999999999974 444333333222 2334 88998875 6999999
Q ss_pred EEEEeeCCCCce-eEEEE
Q psy15734 252 RCVAVNALGETD-GFIKV 268 (314)
Q Consensus 252 ~C~a~n~~g~~~-~~~~l 268 (314)
+|.|.|..|... +.+.|
T Consensus 75 ~C~A~N~~G~~~S~~~~l 92 (94)
T cd05848 75 QCLATNSIGSILSREALL 92 (94)
T ss_pred EEEEEcCCCeEEeccEEE
Confidence 999999999773 34443
No 66
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.56 E-value=6.9e-14 Score=93.83 Aligned_cols=93 Identities=22% Similarity=0.398 Sum_probs=71.1
Q ss_pred CCeEEcCCCcceeecCccEEEEEEEeecCCc-eeEEecCCCeeeec-CCceeeeEeeCCeeeEEEEEEeecCCCC-CeEE
Q psy15734 175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPAS-LNYWTNEKGDMIIT-GDDYEDSRLINGYSCHMTLKIRSILSHQ-FGSY 251 (314)
Q Consensus 175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~s~L~i~~~~~~d-~G~Y 251 (314)
||.| .......+.+|+++.|.|.+.+.|+| .+.|.+.+..+... ..++.+..........++|.|.++..+| .|.|
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y 80 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY 80 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence 5666 55667788999999999999998887 45687764433222 3566665544444567899999998877 7899
Q ss_pred EEEEeeCCCCceeEEEE
Q psy15734 252 RCVAVNALGETDGFIKV 268 (314)
Q Consensus 252 ~C~a~n~~g~~~~~~~l 268 (314)
.|.|.|.+|.+...+.|
T Consensus 81 ~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 81 NCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEeCCccceEEEEe
Confidence 99999999999998876
No 67
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.56 E-value=7.2e-14 Score=94.35 Aligned_cols=86 Identities=21% Similarity=0.293 Sum_probs=62.0
Q ss_pred CeEEcCCCcceeecC---ccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecC-CCCCeEE
Q psy15734 176 PMLTIPNQLEGAFVS---QTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSIL-SHQFGSY 251 (314)
Q Consensus 176 p~~~~~~~~~~v~~g---~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~-~~d~G~Y 251 (314)
|.|...|....+.+| +++.|.|.+.|.|.|.+.|++++ ..+.......... .++ .|.|.++. .+|+|.|
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g-~~l~~~~~~~~~~-~~g-----~L~I~~~~~~~D~G~Y 74 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNG-TEIKFAPESRYTL-VAG-----NLVINNPQKARDAGSY 74 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECC-EECccCCCceEEE-ECC-----eEEEccCCccCcCEEE
Confidence 566667777766555 68999999999999999999974 4333222222222 234 89998865 5999999
Q ss_pred EEEEeeCCCCce-eEEEE
Q psy15734 252 RCVAVNALGETD-GFIKV 268 (314)
Q Consensus 252 ~C~a~n~~g~~~-~~~~l 268 (314)
+|.|.|..|... +.+.|
T Consensus 75 ~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 75 QCLAINRCGTVVSREANL 92 (94)
T ss_pred EEEEEcCcCcEEEEEEEE
Confidence 999999999774 35444
No 68
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.56 E-value=2.9e-14 Score=94.63 Aligned_cols=79 Identities=20% Similarity=0.303 Sum_probs=59.5
Q ss_pred ccEEEEEEEeecCCc--eeEEecCCCeeeecCC--ceeee--EeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCcee
Q psy15734 191 QTVELHCHTEAFPAS--LNYWTNEKGDMIITGD--DYEDS--RLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDG 264 (314)
Q Consensus 191 ~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~--~~~~~--~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 264 (314)
+++.|.|.+.|.|.| .+.|++++..+..... .+... .... +.|.|.+++.+|+|.|+|.|.|..|...+
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~-----~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~ 75 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSN-----GDLMIRNAQLKHAGKYTCTAQTVVDSLSA 75 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEeccccc-----ceEEEccCCHHhCeeeEEEEecCCCcEEE
Confidence 478999999999988 5689997443322221 11111 1122 38999999999999999999999999999
Q ss_pred EEEEEEEecC
Q psy15734 265 FIKVYVNLVD 274 (314)
Q Consensus 265 ~~~l~V~~~~ 274 (314)
++.|.|..+|
T Consensus 76 ~~~l~V~~pP 85 (85)
T cd04970 76 SADLIVRGPP 85 (85)
T ss_pred EEEEEEECCC
Confidence 9999998754
No 69
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.56 E-value=3.5e-14 Score=94.71 Aligned_cols=82 Identities=20% Similarity=0.357 Sum_probs=62.5
Q ss_pred CCCcceeecCccEEEEEEE-eecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734 181 PNQLEGAFVSQTVELHCHT-EAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNAL 259 (314)
Q Consensus 181 ~~~~~~v~~g~~~~l~C~~-~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~ 259 (314)
.+....+.+|+++.|.|.+ .|.|.|.+.|++++..+.....++.. ..++ .|.|.++..+|+|.|+|.|.|..
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~--~~~~-----~L~I~~~~~~D~G~Y~C~a~N~~ 74 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRI--VDDG-----NLLIAEARKSDEGTYKCVATNMV 74 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEE--ccCC-----EEEEeECCcccCEEEEEEEEecc
Confidence 3556678899999999998 79999999999975433332333322 2233 89999999999999999999999
Q ss_pred CCc-eeEEEEE
Q psy15734 260 GET-DGFIKVY 269 (314)
Q Consensus 260 g~~-~~~~~l~ 269 (314)
|.. +..+.|.
T Consensus 75 G~~~s~~~~l~ 85 (86)
T cd05724 75 GERESAAARLS 85 (86)
T ss_pred CceeeeeEEEE
Confidence 976 4455554
No 70
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.56 E-value=1.7e-14 Score=91.09 Aligned_cols=69 Identities=14% Similarity=0.296 Sum_probs=54.0
Q ss_pred EEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEE
Q psy15734 193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN 271 (314)
Q Consensus 193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 271 (314)
+.|.|.+.|.|.|.+.|++++ ..+....++ ..+ ..|.|.++..+|+|.|+|.|.|..|..+...++.+.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g-~~l~~~~~~----~~~-----~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNG-QLIVLNHTF----KRG-----VHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECC-EECCCCCEE----ccC-----CEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 468999999999999999974 444332211 122 289999999999999999999999988777766654
No 71
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.56 E-value=1.5e-14 Score=91.87 Aligned_cols=68 Identities=24% Similarity=0.452 Sum_probs=55.2
Q ss_pred EEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEE
Q psy15734 193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKV 268 (314)
Q Consensus 193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 268 (314)
+.|.|.+.|.|.|.+.|+++ +..+....++.+ ..++ .|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~-g~~~~~~~~~~~--~~~~-----~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKD-GVQVTESGKFHI--SPEG-----YLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEEC-CEECCCCCCEEE--CCCC-----EEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 47999999999999999996 444444444332 2333 89999999999999999999999999888776
No 72
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.55 E-value=6e-14 Score=93.87 Aligned_cols=86 Identities=22% Similarity=0.344 Sum_probs=64.4
Q ss_pred CeEEc--CCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEE
Q psy15734 176 PMLTI--PNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC 253 (314)
Q Consensus 176 p~~~~--~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C 253 (314)
|.|.. .+....+.+|+++.|.|.+.|. .|.+.|++++ ..+. ..++.+. ..++ +|.|.+++.+|+|.|+|
T Consensus 2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng-~~l~-~~~~~~~-~~~~-----~L~I~~v~~~D~G~Y~C 72 (91)
T cd05740 2 PVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNG-SLLV-PPRLQLS-NDNR-----TLTFNNVTRSDTGHYQC 72 (91)
T ss_pred CEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECC-EECC-CCCEEEe-CCCC-----EEEECcCChhhCEEEEE
Confidence 45532 3456688999999999999999 9999999974 3332 2232221 1223 89999999999999999
Q ss_pred EEeeCCCCc-eeEEEEEE
Q psy15734 254 VAVNALGET-DGFIKVYV 270 (314)
Q Consensus 254 ~a~n~~g~~-~~~~~l~V 270 (314)
.|.|..|.. +..+.|.|
T Consensus 73 ~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 73 EASNEVSNMTSDPYILNV 90 (91)
T ss_pred EEEcCCCCEEeeeEEEEe
Confidence 999999976 45677765
No 73
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.55 E-value=5e-14 Score=95.64 Aligned_cols=86 Identities=27% Similarity=0.327 Sum_probs=62.8
Q ss_pred EcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeec-----CCCCCeEEEE
Q psy15734 179 TIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSI-----LSHQFGSYRC 253 (314)
Q Consensus 179 ~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~-----~~~d~G~Y~C 253 (314)
...|....+.+|+++.|.|.+.|.|.|.+.|++++ ..+............++ .|.|.++ ..+|+|.|+|
T Consensus 3 ~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g-~~l~~~~~~~~~~~~~~-----~l~i~~v~~~~~~~~D~G~Y~C 76 (95)
T cd05722 3 LSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDG-VLLNLVSDERRQQLPNG-----SLLITSVVHSKHNKPDEGFYQC 76 (95)
T ss_pred EECCCCeEEcCCCCEEEeeecccCCCCEEEEEECC-eECccccCcceEEccCC-----eEEEeeeeccCCCCCcCEEEEE
Confidence 34556677889999999999999999999999974 43433222222223344 5667665 6899999999
Q ss_pred EEeeC-CCCc-eeEEEEEE
Q psy15734 254 VAVNA-LGET-DGFIKVYV 270 (314)
Q Consensus 254 ~a~n~-~g~~-~~~~~l~V 270 (314)
.|.|. .|.. ++.+.|.|
T Consensus 77 ~a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 77 VAQNDSLGSIVSRTARLTV 95 (95)
T ss_pred EEECCccCcEEEeeeEEeC
Confidence 99999 9877 55666654
No 74
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.55 E-value=1.4e-13 Score=92.84 Aligned_cols=86 Identities=20% Similarity=0.268 Sum_probs=66.3
Q ss_pred CCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734 20 DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR 99 (314)
Q Consensus 20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 99 (314)
.+|.|+.+++...+.+|+++.|.|.+.+.|.+.+.|++++ ..+ ..+.++.+.... ..+.|.|.+++.+|+
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g-~~l--------~~~~~~~~~~~~-~~~~L~i~~~~~~D~ 71 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREG-QII--------VSSQRHQITSTE-YKSTFEISKVQMSDE 71 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECC-EEC--------CCCCcEEEEEcC-CeeEEEECCCCcccC
Confidence 4688999999999999999999999999999999999954 322 223345444332 234899999999999
Q ss_pred eEEEEEEecC-CCccee
Q psy15734 100 GWYMCQINTV-PMTSQK 115 (314)
Q Consensus 100 G~Y~C~~~~~-~~~~~~ 115 (314)
|.|+|.+.|. |.....
T Consensus 72 G~Y~C~a~N~~G~~~~~ 88 (92)
T cd05747 72 GNYTVVVENSEGKQEAQ 88 (92)
T ss_pred EeEEEEEEcCCCCEeEE
Confidence 9999999875 433333
No 75
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.54 E-value=1.8e-13 Score=91.97 Aligned_cols=91 Identities=22% Similarity=0.418 Sum_probs=67.3
Q ss_pred CcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEe
Q psy15734 28 VANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQIN 107 (314)
Q Consensus 28 ~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 107 (314)
..++.+.+|+++.|.|.+.+.+.+.+.|++.+...+ ..+......+.|+.+.......+.|.|.+++.+|+|.|+|.+.
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~ 82 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTL-YFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIF 82 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEE-EeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEE
Confidence 356889999999999999998889999999665432 2222233455677765555556799999999999999999997
Q ss_pred cCCCcceeEEEE
Q psy15734 108 TVPMTSQKGYLQ 119 (314)
Q Consensus 108 ~~~~~~~~~~l~ 119 (314)
.....++.+.|.
T Consensus 83 t~~~~~~~~~~~ 94 (95)
T cd05882 83 TMPVRTAKATVT 94 (95)
T ss_pred eeccccEEEEEE
Confidence 644455555444
No 76
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.54 E-value=8.7e-14 Score=93.67 Aligned_cols=88 Identities=24% Similarity=0.378 Sum_probs=68.6
Q ss_pred CceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeE
Q psy15734 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGW 101 (314)
Q Consensus 22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 101 (314)
|.|...+..+.+.+|+++.|.|.+.+.|.+.+.|+++ +..+ ..+.++.+.... ....|.|.+++.+|+|.
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~-~~~l--------~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~ 70 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKN-GRPL--------TSSQRYQIESDG-GSSSLTIKNVTREDAGT 70 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEET-TEEE--------ESSSSEEEEEET-TEEEEEESSESGGGSEE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCccccccc-ccce--------eeeeeeeeeccc-ceeEEccCCCChhhCEE
Confidence 6788889999999999999999999988899999996 4433 235566655544 44589999999999999
Q ss_pred EEEEEecC-CCcceeEEEE
Q psy15734 102 YMCQINTV-PMTSQKGYLQ 119 (314)
Q Consensus 102 Y~C~~~~~-~~~~~~~~l~ 119 (314)
|+|.+.+. +.....+.|.
T Consensus 71 Y~C~~~n~~g~~~~~~~l~ 89 (90)
T PF07679_consen 71 YTCVASNSSGEATASVNLT 89 (90)
T ss_dssp EEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEECCCEEEEEEEEE
Confidence 99999775 3334444444
No 77
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.54 E-value=3.5e-14 Score=93.83 Aligned_cols=79 Identities=25% Similarity=0.364 Sum_probs=61.2
Q ss_pred ceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCcee
Q psy15734 185 EGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDG 264 (314)
Q Consensus 185 ~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 264 (314)
..+..|+++.|.|.+.|.|.|.+.|++++...... ..... . .....|.|.++..+|+|.|+|.|.|..|....
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~-~~~~~-~-----~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~ 76 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPT-EIGES-R-----KKKWTLSLKNLKPEDSGKYTCHVSNRAGEINA 76 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCC-cccee-c-----CceEEEEEccCChhhCEEEEEEEEcCCccEEE
Confidence 34678999999999999999999999975443222 11110 0 11248999999999999999999999999888
Q ss_pred EEEEEE
Q psy15734 265 FIKVYV 270 (314)
Q Consensus 265 ~~~l~V 270 (314)
++.|.|
T Consensus 77 ~~~v~v 82 (82)
T cd05856 77 TYKVDV 82 (82)
T ss_pred EEEEeC
Confidence 887764
No 78
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.54 E-value=4.8e-14 Score=90.78 Aligned_cols=72 Identities=24% Similarity=0.370 Sum_probs=54.6
Q ss_pred EEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc-eeEEEEEE
Q psy15734 193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET-DGFIKVYV 270 (314)
Q Consensus 193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V 270 (314)
++|.|.+.|.|.|.+.|++++. .+......+.....++ .|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~-~~~~~~~~~~~~~~~g-----~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFL-PVDTTSNGRIKQLRSG-----ALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCE-ECccCCCCCEEEcCCc-----EEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 4799999999999999999743 3332122223333444 89999999999999999999999985 66777765
No 79
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.54 E-value=3.1e-14 Score=95.77 Aligned_cols=81 Identities=17% Similarity=0.143 Sum_probs=62.8
Q ss_pred cceeecCccEEEEEEEee-----cCCceeEEecCCCeeeecC-CceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEee
Q psy15734 184 LEGAFVSQTVELHCHTEA-----FPASLNYWTNEKGDMIITG-DDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN 257 (314)
Q Consensus 184 ~~~v~~g~~~~l~C~~~g-----~p~p~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n 257 (314)
...+.+|+.+.|.|.+.+ .|.|.+.|++++....... ...++.. .++ .|.|.++..+|+|.|+|.+.|
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~-~~~-----~L~I~~~~~~DsG~Y~C~~~N 81 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ-QKD-----LLWFLPAALEDSGLYTCVVRN 81 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee-cCC-----eEEEccCCcccCeEEEEEEcC
Confidence 446789999999999999 6899999999864432211 1122221 233 899999999999999999999
Q ss_pred CCCCceeEEEEEE
Q psy15734 258 ALGETDGFIKVYV 270 (314)
Q Consensus 258 ~~g~~~~~~~l~V 270 (314)
..|.....+.|.|
T Consensus 82 ~~g~~~~~~~L~v 94 (94)
T cd05756 82 STYCMKVSISLTV 94 (94)
T ss_pred CCccEEEEEEEEC
Confidence 9999999888765
No 80
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.54 E-value=6.8e-14 Score=92.64 Aligned_cols=81 Identities=19% Similarity=0.166 Sum_probs=58.7
Q ss_pred CccEEEEEEEeec--CCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEE
Q psy15734 190 SQTVELHCHTEAF--PASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIK 267 (314)
Q Consensus 190 g~~~~l~C~~~g~--p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 267 (314)
|+++.|.|.+.+. |.|.+.|.+++......................++|.|.+++.+|+|.|+|.|.|..|...++..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7899999999999 88999999865432111000000011111234569999999999999999999999999988888
Q ss_pred EEE
Q psy15734 268 VYV 270 (314)
Q Consensus 268 l~V 270 (314)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 766
No 81
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.53 E-value=2.3e-14 Score=91.83 Aligned_cols=70 Identities=33% Similarity=0.510 Sum_probs=55.0
Q ss_pred EEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734 193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270 (314)
Q Consensus 193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 270 (314)
+.|.|.+.|.|.|.+.|+++++... ..+... .... ..|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~--~~~~~~-~~~~-----~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELP--ADRTKF-ENFN-----KTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECC--CCceeE-ecCC-----CEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 4799999999999999999754322 111111 1112 38999999999999999999999999999988876
No 82
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.53 E-value=5e-14 Score=92.81 Aligned_cols=76 Identities=20% Similarity=0.281 Sum_probs=57.6
Q ss_pred CccEEEEEEEeecCCceeEEecCCC--e-eeecCCcee--eeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCcee
Q psy15734 190 SQTVELHCHTEAFPASLNYWTNEKG--D-MIITGDDYE--DSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDG 264 (314)
Q Consensus 190 g~~~~l~C~~~g~p~p~~~W~~~~~--~-~~~~~~~~~--~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 264 (314)
|+++.|.|.+.|.|.|.+.|+++.. . .......+. ..... ...|.|.++..+|+|.|+|.|.|..|....
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~-----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 75 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTN-----IGQLVIYNAQPQDAGLYTCTARNSGGLLRA 75 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEcc-----ccEEEEccCCcccCEEEEEEEecCCceEEE
Confidence 7899999999999999999999632 1 111111111 11111 238999999999999999999999999999
Q ss_pred EEEEEE
Q psy15734 265 FIKVYV 270 (314)
Q Consensus 265 ~~~l~V 270 (314)
++.|.|
T Consensus 76 ~~~l~v 81 (81)
T cd05765 76 NFPLSV 81 (81)
T ss_pred EEEEeC
Confidence 988865
No 83
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.53 E-value=5.9e-14 Score=88.70 Aligned_cols=68 Identities=22% Similarity=0.454 Sum_probs=52.4
Q ss_pred CccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEE
Q psy15734 190 SQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKV 268 (314)
Q Consensus 190 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 268 (314)
|+++.|.|.+.|.|.|.+.|++++.. +.....+. ... ..|.|.++. |+|.|+|.|.|..|...+++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~-l~~~~~~~---~~~-----~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEE-LTKEDEMP---VGR-----NVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEE-CCCcccee---cCc-----cEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 67899999999999999999997543 33222211 112 278999874 8999999999999998887765
No 84
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.53 E-value=1.7e-13 Score=92.35 Aligned_cols=83 Identities=18% Similarity=0.220 Sum_probs=60.9
Q ss_pred CcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEe
Q psy15734 28 VANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQIN 107 (314)
Q Consensus 28 ~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 107 (314)
|+.+.+.+|+++.|.|.+.+.|.+.+.|++++ ..+ ....++.+.........|.|.+++.+|+|.|+|.+.
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g-~~l--------~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 78 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKND-QAL--------ALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVK 78 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCCeEEEEECC-EEC--------ccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEE
Confidence 55789999999999999999999999999954 332 223344444332223479999999999999999998
Q ss_pred cC-CCcceeEEEE
Q psy15734 108 TV-PMTSQKGYLQ 119 (314)
Q Consensus 108 ~~-~~~~~~~~l~ 119 (314)
|. |.....+.|.
T Consensus 79 N~~G~~~~~~~v~ 91 (92)
T cd05737 79 NKYGGETVDVTVS 91 (92)
T ss_pred ECCCcceEEEEEe
Confidence 75 4444444443
No 85
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.52 E-value=8.7e-14 Score=90.78 Aligned_cols=78 Identities=18% Similarity=0.328 Sum_probs=61.3
Q ss_pred CcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734 183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET 262 (314)
Q Consensus 183 ~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~ 262 (314)
....+.+|+.+.|.|.+.+. .+.+.|+++ +..+....++.+ .+. .|.|.+++.+|+|.|+|.|.|..|..
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~-g~~l~~~~~~~~---~~~-----~L~I~~~~~~DsG~Y~C~a~n~~g~~ 71 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKD-GVQLGENNRTRI---TGE-----EVQIKDAVPRDSGLYACVTSSPSGSD 71 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeC-CcCCCCCceEEE---eCC-----EEEECCCChhhCEEEEEEEeCCCCcc
Confidence 34568899999999999996 568999997 444433334332 233 89999999999999999999999988
Q ss_pred eeEEEEEE
Q psy15734 263 DGFIKVYV 270 (314)
Q Consensus 263 ~~~~~l~V 270 (314)
...+.|.|
T Consensus 72 ~~~~~v~V 79 (79)
T cd04973 72 TTYFSVNV 79 (79)
T ss_pred cEEEEEeC
Confidence 88877654
No 86
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.52 E-value=1e-13 Score=89.97 Aligned_cols=74 Identities=24% Similarity=0.443 Sum_probs=58.1
Q ss_pred EEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEE
Q psy15734 193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN 271 (314)
Q Consensus 193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 271 (314)
+.|.|.+.|.|+|.+.|++++. .+............++ +.|.|.++..+|.|.|+|.|.|..|.....+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~-~l~~~~~~~~~~~~~~----~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGM-DITPKLSKQLTLIANG----SELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCE-ECCCCCCccEEEeCCC----CEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 3689999999999999999744 3433332333333322 379999999999999999999999999999999885
No 87
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.52 E-value=7.7e-14 Score=91.20 Aligned_cols=71 Identities=28% Similarity=0.498 Sum_probs=53.4
Q ss_pred EEEEEEEeecCCceeEEecCCCeeee-------cCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc-ee
Q psy15734 193 VELHCHTEAFPASLNYWTNEKGDMII-------TGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET-DG 264 (314)
Q Consensus 193 ~~l~C~~~g~p~p~~~W~~~~~~~~~-------~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~ 264 (314)
++|.|.+.|.|.|.+.|+++++.... ...++ ....++ +|.|.++..+|+|.|+|.|.|..|.+ ++
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~--~~~~~~-----~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~ 73 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRI--QLLSNG-----SLLIKHVLEEDSGYYLCKVSNDVGADASK 73 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCE--EEecCC-----eEEECcCCcccCEEEEEEEEeCCCCCCce
Confidence 47999999999999999997543211 11121 222333 89999999999999999999999987 66
Q ss_pred EEEEEE
Q psy15734 265 FIKVYV 270 (314)
Q Consensus 265 ~~~l~V 270 (314)
.+.|+|
T Consensus 74 ~~~l~~ 79 (79)
T cd05734 74 SMVLTV 79 (79)
T ss_pred EEEEeC
Confidence 666654
No 88
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.51 E-value=3.2e-13 Score=92.16 Aligned_cols=96 Identities=20% Similarity=0.331 Sum_probs=66.7
Q ss_pred CCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734 21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG 100 (314)
Q Consensus 21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 100 (314)
+|.+.. +.++.+.+|++++|.|.+.+.|.+.+.|++.+....... .....+.++.+.... ..+.|.|.+++.+|+|
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~--~~~~~~~r~~v~~~~-~~~~L~I~~v~~~D~G 77 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSE--GDKSPDGRIEVKGQH-GESSLHIKDVKLSDSG 77 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceecc--CCcCcCceEEEeecC-CeeEEEEeeCCcCCCE
Confidence 466654 668899999999999999999999999999532211110 001123455554322 2347999999999999
Q ss_pred EEEEEEecC-CCcceeEEEEE
Q psy15734 101 WYMCQINTV-PMTSQKGYLQV 120 (314)
Q Consensus 101 ~Y~C~~~~~-~~~~~~~~l~v 120 (314)
.|+|.+.|. |.....+.|.|
T Consensus 78 ~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 78 RYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEEEEeccCCcceeEEEEeC
Confidence 999999776 55555555543
No 89
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.51 E-value=9.8e-14 Score=89.74 Aligned_cols=76 Identities=17% Similarity=0.382 Sum_probs=58.5
Q ss_pred CeEEcCCCcceeecCccEEEEEEEeecCC-ceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734 176 PMLTIPNQLEGAFVSQTVELHCHTEAFPA-SLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV 254 (314)
Q Consensus 176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~-p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~ 254 (314)
|.+.+.|....+.+|++++|+|.+.+.|. +.+.|++++ ..+.. .+ ..|.|.++ .+|+|.|+|.
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng-~~l~~---------~~-----~~l~i~~~-~~dsG~Y~C~ 64 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNG-KLLET---------TT-----NSYRIRAA-NNDSGEYRCQ 64 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECC-EEeec---------cC-----CeEEEeec-ccCCEEeEEE
Confidence 56778888889999999999999999886 478999974 33311 11 28999999 9999999999
Q ss_pred EeeCCCCceeEEEEE
Q psy15734 255 AVNALGETDGFIKVY 269 (314)
Q Consensus 255 a~n~~g~~~~~~~l~ 269 (314)
|.|. ..+..+.|.
T Consensus 65 a~~~--~~S~~v~l~ 77 (78)
T cd05752 65 TQGS--SLSDPVHLE 77 (78)
T ss_pred CCCC--cCCCCEEEe
Confidence 9886 333344443
No 90
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.51 E-value=4.7e-13 Score=90.32 Aligned_cols=88 Identities=17% Similarity=0.310 Sum_probs=62.5
Q ss_pred cCCcceEEEcCCcEEEEEEecCCCc-eEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEE
Q psy15734 26 EPVANVTATVGKEALMACVVENLRE-YKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMC 104 (314)
Q Consensus 26 ~~~~~~~v~~g~~~~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 104 (314)
..|....+.+|+++.|.|.+.+.|. +.+.|++.++..+.. .+.++.+..++...++|.|.+++.+|+|.|+|
T Consensus 5 ~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~-------~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC 77 (96)
T cd05865 5 IVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTP-------NQQRISVVRNDDYSSTLTIYNANIDDAGIYKC 77 (96)
T ss_pred EeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccc-------cCCeEEEEeCCCCceEEEEeccChhhCEEEEE
Confidence 3455667999999999999999884 799999855543321 12344444333334589999999999999999
Q ss_pred EEecC--CCcceeEEEEE
Q psy15734 105 QINTV--PMTSQKGYLQV 120 (314)
Q Consensus 105 ~~~~~--~~~~~~~~l~v 120 (314)
.+.|. +..+..+.|.|
T Consensus 78 ~A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 78 VVSNEDEGESEATVNVKI 95 (96)
T ss_pred EEEcCCCCcEEEEEEEEE
Confidence 99886 34445555554
No 91
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.49 E-value=6.5e-13 Score=89.64 Aligned_cols=92 Identities=26% Similarity=0.469 Sum_probs=66.7
Q ss_pred CcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEe
Q psy15734 28 VANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQIN 107 (314)
Q Consensus 28 ~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 107 (314)
++.+.+.+|+++.|.|.+.+.+.+.+.|++.+...+.. .......++|+.+.......++|.|.+++.+|+|.|+|.+.
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~-~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~ 82 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYF-DDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLF 82 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEE-cCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeE
Confidence 45789999999999999999888999999755433321 11112345677664443445689999999999999999997
Q ss_pred cCCCcceeEEEEE
Q psy15734 108 TVPMTSQKGYLQV 120 (314)
Q Consensus 108 ~~~~~~~~~~l~v 120 (314)
+....+..+.|.|
T Consensus 83 t~~~~~~~~~l~v 95 (95)
T cd07701 83 TMPVKTSKAYLTV 95 (95)
T ss_pred eecCccEEEEEEC
Confidence 6555555555543
No 92
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.48 E-value=5.6e-13 Score=89.11 Aligned_cols=86 Identities=16% Similarity=0.274 Sum_probs=63.7
Q ss_pred CCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734 21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG 100 (314)
Q Consensus 21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 100 (314)
+|.+...+....+.+|+++.|.|.+.+.|.+.+.|++++.... ....... ..+.|.|.+++.+|+|
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~---------~~~~~~~-----~~~~L~i~~v~~~D~G 66 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMP---------SSAEISM-----SGAVLKIPNIQFEDEG 66 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCC---------CccEEEE-----eCCEEEECCCCcccCE
Confidence 3556667888999999999999999999999999999654321 1111111 1237999999999999
Q ss_pred EEEEEEecC-CCcceeEEEEE
Q psy15734 101 WYMCQINTV-PMTSQKGYLQV 120 (314)
Q Consensus 101 ~Y~C~~~~~-~~~~~~~~l~v 120 (314)
.|+|.+.|. |.......|.|
T Consensus 67 ~Y~C~a~N~~G~~~~~~~l~V 87 (88)
T cd04968 67 TYECEAENIKGKDTHQGRIYV 87 (88)
T ss_pred EEEEEEEECCCcEEEEEEEEE
Confidence 999999775 45555555554
No 93
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.48 E-value=7.2e-13 Score=87.38 Aligned_cols=81 Identities=15% Similarity=0.198 Sum_probs=57.5
Q ss_pred CccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCC--CceeEEE
Q psy15734 190 SQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG--ETDGFIK 267 (314)
Q Consensus 190 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~ 267 (314)
|+++.|.|.+.+.|.+.+.|+++++........ ......+.....++|.|.+++.+|+|.|+|.|.|..+ ....++.
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPE-VEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceE-EEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence 789999999999999999999865432111000 0011111222356999999999999999999999876 5677777
Q ss_pred EEEE
Q psy15734 268 VYVN 271 (314)
Q Consensus 268 l~V~ 271 (314)
|+|.
T Consensus 80 i~V~ 83 (84)
T cd05861 80 ITVH 83 (84)
T ss_pred EEEe
Confidence 7774
No 94
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.48 E-value=2.7e-13 Score=88.21 Aligned_cols=77 Identities=17% Similarity=0.199 Sum_probs=57.2
Q ss_pred EcCCCcceeecCccEEEEEEEeecCCc-eeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEee
Q psy15734 179 TIPNQLEGAFVSQTVELHCHTEAFPAS-LNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN 257 (314)
Q Consensus 179 ~~~~~~~~v~~g~~~~l~C~~~g~p~p-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n 257 (314)
...+.+..+..|+++.|.|.+.|.|.| .|.|++++. .+.. .... . .+.|.|..+ .|+|.|+|.|.|
T Consensus 2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~-~l~~--~~~~---~-----~s~L~i~~~--~d~g~Y~C~A~N 68 (81)
T cd05749 2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGS-PLGD--PPAP---S-----PSVLNVPGL--NETSKFSCEAHN 68 (81)
T ss_pred cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCE-ECCC--CCCC---C-----CCEEEEccc--cCCeEEEEEEEe
Confidence 345677889999999999999999999 799999743 3322 1111 1 138889887 478999999999
Q ss_pred CCCCcee-EEEE
Q psy15734 258 ALGETDG-FIKV 268 (314)
Q Consensus 258 ~~g~~~~-~~~l 268 (314)
..|.... ..+|
T Consensus 69 ~~G~~~s~~a~~ 80 (81)
T cd05749 69 AKGVTTSRTGTV 80 (81)
T ss_pred ccCcEEeeeEEe
Confidence 9996643 4443
No 95
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.47 E-value=9.5e-13 Score=87.18 Aligned_cols=82 Identities=10% Similarity=0.176 Sum_probs=60.3
Q ss_pred cceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEec
Q psy15734 29 ANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINT 108 (314)
Q Consensus 29 ~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 108 (314)
..+.+.+|+.+.|.|.+.|.|.|.+.|++++ ..+. ..+.++.+..... .+.|.|.++..+|+|.|+|.+.|
T Consensus 3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~-~~i~-------~~~~r~~~~~~~~-~~~L~I~~~~~~D~G~Y~c~a~N 73 (86)
T cd05894 3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGD-KAFT-------ETEGRVRVESYKD-LSSFVIEGAEREDEGVYTITVTN 73 (86)
T ss_pred CEEEEEcCCEEEEEeeEeecCCCeEEEEECC-EECc-------cCCCeEEEEEcCC-eEEEEECCCccCcCEEEEEEEEe
Confidence 3578999999999999999999999999954 3321 1123555443322 34799999999999999999987
Q ss_pred C-CCcceeEEEE
Q psy15734 109 V-PMTSQKGYLQ 119 (314)
Q Consensus 109 ~-~~~~~~~~l~ 119 (314)
. |.....+.|.
T Consensus 74 ~~G~~~~~~~l~ 85 (86)
T cd05894 74 PVGEDHASLFVK 85 (86)
T ss_pred CCCcEEEEEEEE
Confidence 5 4444444444
No 96
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.47 E-value=1.3e-12 Score=87.22 Aligned_cols=86 Identities=19% Similarity=0.333 Sum_probs=63.1
Q ss_pred ecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEE
Q psy15734 25 AEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMC 104 (314)
Q Consensus 25 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 104 (314)
..++..+.+.+|+++.|.|.+.|.|. .+.|+++++..+. .+.++.+..++. ...|.|.+++.+|+|.|+|
T Consensus 4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~--------~~~r~~~~~~g~-~~~L~I~~v~~~D~G~Y~C 73 (92)
T cd05866 4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIV--------SSQRVVVQKEGV-RSRLTIYNANIEDAGIYRC 73 (92)
T ss_pred EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEec--------CCCCEEEEeCCC-eeEEEEecCChHHCEEEEE
Confidence 34667788999999999999999887 9999986655432 234565544332 2379999999999999999
Q ss_pred EEecCCCc--ceeEEEEE
Q psy15734 105 QINTVPMT--SQKGYLQV 120 (314)
Q Consensus 105 ~~~~~~~~--~~~~~l~v 120 (314)
.+.|..+. ...+.|.+
T Consensus 74 ~A~N~~G~~~~~~i~l~~ 91 (92)
T cd05866 74 QATDAKGQTQEATVVLEI 91 (92)
T ss_pred EEEcCCCcEEEEEEEEEE
Confidence 99876433 34444443
No 97
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.47 E-value=4.5e-13 Score=88.79 Aligned_cols=82 Identities=16% Similarity=0.285 Sum_probs=61.5
Q ss_pred eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEE
Q psy15734 24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYM 103 (314)
Q Consensus 24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 103 (314)
|+..|....+..|+++.|.|.+.+.|.+.+.|++++ ..+ ..+.++.... +.|.|.+++.+|+|.|+
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g-~~~--------~~~~~~~~~~-----~~L~i~~~~~~D~G~Y~ 67 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNG-QPL--------ASENRIEVEA-----GDLRITKLSLSDSGMYQ 67 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECC-EEC--------CCCCeEEEeC-----CEEEEeeCCHHHCEEEE
Confidence 456788899999999999999999999999999954 322 2233443322 27999999999999999
Q ss_pred EEEecC-CCcceeEEEE
Q psy15734 104 CQINTV-PMTSQKGYLQ 119 (314)
Q Consensus 104 C~~~~~-~~~~~~~~l~ 119 (314)
|.+.|. +.....+.|.
T Consensus 68 C~a~N~~G~~~~~~~l~ 84 (85)
T cd05728 68 CVAENKHGTIYASAELA 84 (85)
T ss_pred EEEECCCCeEEEEEEEE
Confidence 999875 4444444443
No 98
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.47 E-value=2.3e-13 Score=86.06 Aligned_cols=68 Identities=16% Similarity=0.157 Sum_probs=50.0
Q ss_pred EEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEE
Q psy15734 193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKV 268 (314)
Q Consensus 193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 268 (314)
+.|.|.+.|.|+|.+.|++++..+.....++ ...+. +|.|.++..+|+|.|+|.|.|..........+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~---~~~~~-----~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i 68 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRY---HVDGY-----SLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI 68 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEE---EeCCC-----EEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence 4689999999999999999853322211222 12233 89999999999999999999987665554444
No 99
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.46 E-value=4.3e-13 Score=86.86 Aligned_cols=72 Identities=18% Similarity=0.296 Sum_probs=53.1
Q ss_pred EEEEEEEee-cCCceeEEecCCCeeeecCCceee-eEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEE
Q psy15734 193 VELHCHTEA-FPASLNYWTNEKGDMIITGDDYED-SRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIK 267 (314)
Q Consensus 193 ~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 267 (314)
+.|.|.+.| .|.|.+.|++++. .+........ ..... ...+.|.|.++..+|+|.|+|.|.|..|.+..++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~-~l~~~~~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGK-ELNRKNKPRNIKIRNK--KKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCe-eccccCCcceEEEEec--CceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 469999999 9999999999744 3333332221 11111 12358999999999999999999999999877764
No 100
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.46 E-value=9.4e-13 Score=88.50 Aligned_cols=83 Identities=19% Similarity=0.224 Sum_probs=59.9
Q ss_pred CCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEE
Q psy15734 27 PVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI 106 (314)
Q Consensus 27 ~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 106 (314)
.|..+.+.+|+++.|.|.+.+.|.+.+.|++++.. + ..+.++.+.........|.|.+++.+|+|.|+|.+
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~-~--------~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 77 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQD-I--------ELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINV 77 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEE-C--------CCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEE
Confidence 46688999999999999999888899999996532 2 12334443332222347999999999999999999
Q ss_pred ecC-CCcceeEEE
Q psy15734 107 NTV-PMTSQKGYL 118 (314)
Q Consensus 107 ~~~-~~~~~~~~l 118 (314)
.|. +.....+.|
T Consensus 78 ~N~~G~~~~~~~v 90 (92)
T cd05891 78 KNKYGGETVDVTV 90 (92)
T ss_pred EeCCCceeeEEEE
Confidence 775 444444443
No 101
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.46 E-value=1.2e-12 Score=89.05 Aligned_cols=95 Identities=21% Similarity=0.306 Sum_probs=66.2
Q ss_pred CCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734 21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG 100 (314)
Q Consensus 21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 100 (314)
.|.|...+....+..|++++|.|.+.|.|.+.+.|++++ ..+.... ...++++.+.... ..+.|.|.+++.+|+|
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~-~~~~~~~---~~~~~~~~v~~~~-~~~~L~I~~v~~~D~G 76 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTST-RNISSEE---KTLDGHIVVRSHA-RVSSLTLKYIQYTDAG 76 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECC-ccccCCc---cccCccEEEEcCc-cEEEEEEecCccCcCE
Confidence 477777777776777899999999999999999999954 3321110 0112344433322 2347999999999999
Q ss_pred EEEEEEecC-CCcceeEEEEE
Q psy15734 101 WYMCQINTV-PMTSQKGYLQV 120 (314)
Q Consensus 101 ~Y~C~~~~~-~~~~~~~~l~v 120 (314)
.|+|.+.|. |..+..+.|.|
T Consensus 77 ~Y~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 77 EYLCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEEEEecCCCCeeEEEEEEC
Confidence 999999876 55555556553
No 102
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.46 E-value=1.2e-12 Score=89.11 Aligned_cols=85 Identities=16% Similarity=0.128 Sum_probs=60.9
Q ss_pred CcceEEEcCCcEEEEEEecC-CCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeC----CceeEEEEEeeecCCCCeEE
Q psy15734 28 VANVTATVGKEALMACVVEN-LREYKVAWVKMITQTILSIHHKVVTQNKRVSITFN----DHRSWFLHLRDVQETDRGWY 102 (314)
Q Consensus 28 ~~~~~v~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y 102 (314)
...+.+.+|+++.|.|.+.+ .|.+.+.|+| ++..+.. +........ ......|.|.+++.+|+|.|
T Consensus 10 ~~~~~v~~G~~v~L~c~v~g~~P~p~v~W~K-dg~~i~~--------~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 80 (101)
T cd04975 10 NTTIFVNLGENLNLVVEVEAYPPPPHINWTY-DNRTLTN--------KLTEIVTSENESEYRYVSELKLVRLKESEAGTY 80 (101)
T ss_pred CceEEEECCCCEEEEEEEEecCCCCccEEEe-CCeeCCC--------CcceeEEEeccCcceEEEEEEEeecCHhhCeeE
Confidence 35788999999999999999 8889999999 4444321 111111111 01124799999999999999
Q ss_pred EEEEecC-CCcceeEEEEEE
Q psy15734 103 MCQINTV-PMTSQKGYLQVV 121 (314)
Q Consensus 103 ~C~~~~~-~~~~~~~~l~v~ 121 (314)
+|.+.|. +..+..+.|.|.
T Consensus 81 tc~A~N~~G~~~~t~~L~V~ 100 (101)
T cd04975 81 TFLASNSDASKSLTFELYVN 100 (101)
T ss_pred EEEEECCCccEEEEEEEEEE
Confidence 9999876 555666666664
No 103
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.46 E-value=2.6e-13 Score=88.03 Aligned_cols=66 Identities=24% Similarity=0.378 Sum_probs=47.6
Q ss_pred EEEEEEEeecCCceeEEecCCCeeeecCCceeeeE-eeCCeeeEEEEEEeecCC----CCCeEEEEEEeeCCCCcee
Q psy15734 193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSR-LINGYSCHMTLKIRSILS----HQFGSYRCVAVNALGETDG 264 (314)
Q Consensus 193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~----~d~G~Y~C~a~n~~g~~~~ 264 (314)
+.|.|.+.|.|.|.+.|++++.. +.......+.. ..++ .|.|.++.. +|+|.|+|.|.|..|....
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~-l~~~~~~~~~~~~~~g-----~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTH-FDPEKDPRVTMKPDSG-----TLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeE-CCCCCCCCEEEeCCCC-----EEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 47999999999999999997443 32222222222 2234 888988754 7999999999999997643
No 104
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.45 E-value=5.2e-13 Score=85.35 Aligned_cols=71 Identities=23% Similarity=0.394 Sum_probs=54.0
Q ss_pred CCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcce
Q psy15734 36 GKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQ 114 (314)
Q Consensus 36 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~ 114 (314)
|+++.|.|.+.+.|.+.+.|+|++ ..+ ..+.++.+..+ ++|.|.+++.+|+|.|+|.+.|. +....
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~-~~l--------~~~~r~~~~~~----g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 67 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGT-ELL--------VNNSRISIWDD----GSLEILNITKLDEGSYTCFAENNRGKANS 67 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCC-Eec--------ccCCCEEEcCC----CEEEECcCChhHCEEEEEEEECCCCceeE
Confidence 788999999999999999999954 332 22346655433 27999999999999999999875 44555
Q ss_pred eEEEE
Q psy15734 115 KGYLQ 119 (314)
Q Consensus 115 ~~~l~ 119 (314)
.+.|.
T Consensus 68 ~~~l~ 72 (73)
T cd05852 68 TGVLS 72 (73)
T ss_pred EEEEE
Confidence 55554
No 105
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.45 E-value=6.6e-13 Score=85.14 Aligned_cols=74 Identities=18% Similarity=0.387 Sum_probs=53.9
Q ss_pred EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcceeEE
Q psy15734 39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQKGY 117 (314)
Q Consensus 39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~ 117 (314)
+.|.|.+.|.|.|.+.|+|++ ..+. ....++.+..++....+|.|.+++.+|+|.|+|.+.|. |.....+.
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~-~~i~-------~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~ 72 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNN-EMVQ-------YNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHAR 72 (75)
T ss_pred CEEEEEEEecCCCeEEEEECC-EECc-------CCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEE
Confidence 579999999999999999954 3321 12345666554433347999999999999999999875 55555555
Q ss_pred EEE
Q psy15734 118 LQV 120 (314)
Q Consensus 118 l~v 120 (314)
|.|
T Consensus 73 L~V 75 (75)
T cd05892 73 LDV 75 (75)
T ss_pred EeC
Confidence 543
No 106
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.45 E-value=1.8e-12 Score=86.97 Aligned_cols=86 Identities=13% Similarity=0.163 Sum_probs=61.5
Q ss_pred eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEE
Q psy15734 24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYM 103 (314)
Q Consensus 24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 103 (314)
++.+++...+.+|+.+.|.|.+.|.|.+.+.|++++.. +. ......... ......|.|.+++.+|.|.|+
T Consensus 3 ~v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~-~~--------~~~~~~~~~-~~~~~~L~I~~v~~~D~g~Y~ 72 (90)
T cd04972 3 PVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLI-VI--------QTRTDTLET-TVDIYNLQLSNITSETQTTVT 72 (90)
T ss_pred cccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEE-cc--------CCccEEEEe-cCCEEEEEEecCCcccCEEEE
Confidence 34567778899999999999999999999999996532 21 111111111 122347999999999999999
Q ss_pred EEEecC-CCcceeEEEE
Q psy15734 104 CQINTV-PMTSQKGYLQ 119 (314)
Q Consensus 104 C~~~~~-~~~~~~~~l~ 119 (314)
|.+.|. |.....+.|.
T Consensus 73 C~A~N~~G~~~~~~~L~ 89 (90)
T cd04972 73 CTAENPVGQANVSVQVT 89 (90)
T ss_pred EEEECCCCceeEEEEEe
Confidence 999876 4445555554
No 107
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.45 E-value=2.8e-12 Score=85.34 Aligned_cols=89 Identities=20% Similarity=0.258 Sum_probs=70.2
Q ss_pred CcceeecCccEEEEEEEeecCCce-eEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734 183 QLEGAFVSQTVELHCHTEAFPASL-NYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE 261 (314)
Q Consensus 183 ~~~~v~~g~~~~l~C~~~g~p~p~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~ 261 (314)
..+.|.+|+++.|.|.++++|+|. +.|.+++................+.+++.+.|++.++..+|+|.|+|.|.|....
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 456799999999999999999998 9999975433222222222222244678889999999999999999999999999
Q ss_pred ceeEEEEEEE
Q psy15734 262 TDGFIKVYVN 271 (314)
Q Consensus 262 ~~~~~~l~V~ 271 (314)
.+.++.|.|.
T Consensus 91 ~s~tF~l~v~ 100 (101)
T cd05860 91 ASVTFNVYVN 100 (101)
T ss_pred EEEEEEEEEe
Confidence 8888888774
No 108
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.45 E-value=3e-12 Score=85.42 Aligned_cols=91 Identities=22% Similarity=0.299 Sum_probs=69.5
Q ss_pred CcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEe
Q psy15734 28 VANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQIN 107 (314)
Q Consensus 28 ~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 107 (314)
.+++++.+|+++.|.|.+.+.....+.|++.+...+..... ....+.|+.........++|.|.+++.+|+|.|.|++.
T Consensus 4 ~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~-~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~ 82 (95)
T cd05881 4 TEDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDV-RPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLY 82 (95)
T ss_pred cCceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCc-cccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEE
Confidence 45688999999999999988777789999877554443332 33467888887645567789999999999999999997
Q ss_pred cCCCcceeEEEE
Q psy15734 108 TVPMTSQKGYLQ 119 (314)
Q Consensus 108 ~~~~~~~~~~l~ 119 (314)
.....+....+.
T Consensus 83 t~p~~~~~~~~~ 94 (95)
T cd05881 83 TDPPQEAYTTIT 94 (95)
T ss_pred cccCeEEEEEEE
Confidence 655555544443
No 109
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.45 E-value=4.3e-13 Score=86.81 Aligned_cols=70 Identities=24% Similarity=0.352 Sum_probs=48.3
Q ss_pred EEEEEEEeecCCceeEEecCCCeeeecCCceeeeE-eeCCeeeEEEEEEeecCC----CCCeEEEEEEeeCCCCcee-EE
Q psy15734 193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSR-LINGYSCHMTLKIRSILS----HQFGSYRCVAVNALGETDG-FI 266 (314)
Q Consensus 193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~----~d~G~Y~C~a~n~~g~~~~-~~ 266 (314)
+.|.|.+.|.|.|.+.|++++..+.. ........ ..++ +|.|..+.. .|.|.|+|.|.|..|...+ .+
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~-~~~~~~~~~~~~g-----~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~ 74 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDI-DKDPKVTMKPNTG-----TLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNI 74 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCC-cCCCCEEEeCCCc-----eEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEE
Confidence 47999999999999999997543322 22222222 2233 788877764 3789999999999997644 44
Q ss_pred EE
Q psy15734 267 KV 268 (314)
Q Consensus 267 ~l 268 (314)
.|
T Consensus 75 ~~ 76 (77)
T cd05874 75 VI 76 (77)
T ss_pred EE
Confidence 43
No 110
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.44 E-value=1.8e-12 Score=87.17 Aligned_cols=84 Identities=19% Similarity=0.254 Sum_probs=59.2
Q ss_pred CCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecC-------CceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734 182 NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITG-------DDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV 254 (314)
Q Consensus 182 ~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-------~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~ 254 (314)
..+..+.+|+++.|.|.+.+.|.|.+.|+++++..+... .++.+..... ....|.|.++..+|+|.|+|.
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~L~I~nV~~~D~G~YtC~ 80 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTP---TELIISISNVQLSDEGEYTCS 80 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCC---ceEEEEECCCCcccCEEEEEE
Confidence 356678999999999999999999999999765432222 2222211111 135999999999999999999
Q ss_pred EeeCCCCceeEEEEE
Q psy15734 255 AVNALGETDGFIKVY 269 (314)
Q Consensus 255 a~n~~g~~~~~~~l~ 269 (314)
+.... ..++...|.
T Consensus 81 ~~t~~-~~~~~~~~~ 94 (95)
T cd05882 81 IFTMP-VRTAKATVT 94 (95)
T ss_pred EEeec-cccEEEEEE
Confidence 98833 344444443
No 111
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.44 E-value=2e-12 Score=85.39 Aligned_cols=82 Identities=20% Similarity=0.171 Sum_probs=57.0
Q ss_pred CcEEEEEEecCCCce--EEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcc
Q psy15734 37 KEALMACVVENLREY--KVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTS 113 (314)
Q Consensus 37 ~~~~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~ 113 (314)
++++|.|.+.+.|.+ .+.|+++ +..+.. ...+.++.........++|.|.+++.+|+|.|+|.+.|. +..+
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~-g~~i~~-----~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~ 74 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLD-DFPIDL-----DKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSAS 74 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEEC-CeEccc-----cCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEE
Confidence 478999999988765 6899994 443321 111233322221122348999999999999999999776 6667
Q ss_pred eeEEEEEEeCC
Q psy15734 114 QKGYLQVVVPP 124 (314)
Q Consensus 114 ~~~~l~v~~~p 124 (314)
+.+.|.|..+|
T Consensus 75 ~~~~L~V~~~P 85 (85)
T cd05854 75 ASATLVVRGPP 85 (85)
T ss_pred EEEEEEEECCC
Confidence 78889888765
No 112
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.44 E-value=3.7e-12 Score=92.92 Aligned_cols=73 Identities=34% Similarity=0.515 Sum_probs=57.4
Q ss_pred EEEEeeecCCCCeEEEEEEecC-CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEeccc-CC-CceEEEcC
Q psy15734 88 FLHLRDVQETDRGWYMCQINTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGY-PE-PYVAWRRE 162 (314)
Q Consensus 88 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-p~~~W~~~ 162 (314)
+|.|.+++.+|+|.|.|.+.+. +.....+.|.|.++|.+...+ ......+|+.+.|.|.+.|. |. +.+.|++.
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~--~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~ 77 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSL--EKLVSMIEEPQTLICHIAGYYPLDVQVEWTRE 77 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeC--CCceeecCCcEEEEEEECCCCCCCeEEEEEEC
Confidence 6999999999999999999654 555667789999999886654 23334478889999999985 54 48999983
No 113
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.44 E-value=7.9e-13 Score=85.16 Aligned_cols=72 Identities=19% Similarity=0.294 Sum_probs=52.9
Q ss_pred cCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcc
Q psy15734 35 VGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTS 113 (314)
Q Consensus 35 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~ 113 (314)
+|+++.|.|.+.+.|.+.+.|++++ ..+ ..+.+..+... +.|.|.+++.+|+|.|+|.+.|. +...
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g-~~~--------~~~~~~~~~~~----~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 67 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGG-SQL--------SVDRRHLVLSS----GTLRISRVALHDQGQYECQAVNIVGSQR 67 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECC-EEC--------CCCCCeEEccC----CeEEEeeCCHHhCEEEEEEEEeCCCcee
Confidence 6899999999999999999999954 322 12223322222 37999999999999999999875 4445
Q ss_pred eeEEEE
Q psy15734 114 QKGYLQ 119 (314)
Q Consensus 114 ~~~~l~ 119 (314)
..+.|.
T Consensus 68 ~~~~L~ 73 (74)
T cd05745 68 TVAQLT 73 (74)
T ss_pred EEEEEe
Confidence 555554
No 114
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.43 E-value=9.3e-13 Score=85.24 Aligned_cols=66 Identities=24% Similarity=0.337 Sum_probs=46.7
Q ss_pred EEEEEEEeecCCceeEEecCCCeeee-cCCceeeeEeeCCeeeEEEEEEeecCC----CCCeEEEEEEeeCCCCcee
Q psy15734 193 VELHCHTEAFPASLNYWTNEKGDMII-TGDDYEDSRLINGYSCHMTLKIRSILS----HQFGSYRCVAVNALGETDG 264 (314)
Q Consensus 193 ~~l~C~~~g~p~p~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~~s~L~i~~~~~----~d~G~Y~C~a~n~~g~~~~ 264 (314)
+.|.|.+.|+|.|.+.|++++..... ...++.+ ...++ +|.|..+.. +|+|.|+|.|.|..|....
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~-~~~~~-----~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSM-RRRSG-----TLVIDFSGGGRPEDYEGEYQCFARNNLGTALS 71 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEE-eCCCc-----eEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence 47999999999999999997543221 2222222 12333 899987642 4699999999999997643
No 115
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.43 E-value=3.9e-12 Score=85.52 Aligned_cols=85 Identities=16% Similarity=0.290 Sum_probs=60.8
Q ss_pred cCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEE
Q psy15734 26 EPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQ 105 (314)
Q Consensus 26 ~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 105 (314)
..|....+..|+++.|.|.+.+.|. .+.|++.++..+. ...++.+...+.....|.|.+++.+|+|.|+|.
T Consensus 5 v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~--------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 75 (92)
T cd04977 5 IVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLV--------TQQQISVVQNDDVRSTLTIYNANIEDAGIYKCV 75 (92)
T ss_pred EecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEec--------cCCCEEEEeCCCCEEEEEEecCCcccCEEEEEE
Confidence 4466788999999999999998864 9999985554332 123444444443445899999999999999999
Q ss_pred EecC-C-CcceeEEEE
Q psy15734 106 INTV-P-MTSQKGYLQ 119 (314)
Q Consensus 106 ~~~~-~-~~~~~~~l~ 119 (314)
+.|. + .....+.|.
T Consensus 76 A~N~~g~~~~~sv~l~ 91 (92)
T cd04977 76 ATDAKGTESEATVNLK 91 (92)
T ss_pred EEcCCCCcceeEEEEE
Confidence 9876 3 234444443
No 116
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.42 E-value=2.3e-12 Score=87.76 Aligned_cols=93 Identities=24% Similarity=0.310 Sum_probs=64.0
Q ss_pred CCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734 21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG 100 (314)
Q Consensus 21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 100 (314)
+|.|. .+....+.+|+++.|.|.+.+.|.+.+.|++++ ..+... ....+.++.+... ...+.|.|.+++.+|+|
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~-~~~~~~---~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G 75 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRAT-RNFSEG---DKSLDGRIVVRGH-ARVSSLTLKDVQLTDAG 75 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECC-cccCCC---CccccceEEEeCC-ccEEEEEECcCCcCcCE
Confidence 46664 455788999999999999999999999999954 222110 0011233433322 22348999999999999
Q ss_pred EEEEEEecC-CCcceeEEEE
Q psy15734 101 WYMCQINTV-PMTSQKGYLQ 119 (314)
Q Consensus 101 ~Y~C~~~~~-~~~~~~~~l~ 119 (314)
.|+|.+.|. |..+..+.|.
T Consensus 76 ~Y~C~a~N~~G~~~~s~~l~ 95 (96)
T cd05732 76 RYDCEASNRIGGDQQSMYLE 95 (96)
T ss_pred EeEEEEEeCCCCcEEEEEEe
Confidence 999999875 4445555554
No 117
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.42 E-value=1.1e-12 Score=84.30 Aligned_cols=74 Identities=20% Similarity=0.373 Sum_probs=53.1
Q ss_pred EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcceeEE
Q psy15734 39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQKGY 117 (314)
Q Consensus 39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~ 117 (314)
++|.|.+.|.|.|.+.|+|++.. +. ....++.+..++.....|.|.+++.+|+|.|+|.+.|. |..+..+.
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~-l~-------~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~ 72 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENES-LT-------HNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTAR 72 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEE-CC-------CCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEE
Confidence 57999999999999999995532 21 12345555444333336999999999999999999876 44555555
Q ss_pred EEE
Q psy15734 118 LQV 120 (314)
Q Consensus 118 l~v 120 (314)
|.|
T Consensus 73 L~V 75 (75)
T cd05893 73 LDV 75 (75)
T ss_pred EeC
Confidence 553
No 118
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.42 E-value=2.8e-12 Score=87.07 Aligned_cols=90 Identities=22% Similarity=0.321 Sum_probs=63.9
Q ss_pred CceecC--CcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734 22 PRFAEP--VANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR 99 (314)
Q Consensus 22 p~~~~~--~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 99 (314)
|.|... +..+.+..|+++.|.|.+.|.|.+.+.|++++ ..+.. .+.++..... ...|.|.+++.+|+
T Consensus 2 p~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g-~~~~~-------~~~~~~~~~~---~~~L~I~~v~~~D~ 70 (95)
T cd05730 2 PTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDG-EPIES-------GEEKYSFNED---GSEMTILDVDKLDE 70 (95)
T ss_pred CccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECC-EECcC-------CCCEEEEeCC---CCEEEECCCChhhC
Confidence 444443 34568899999999999999999999999954 33211 1123322221 12699999999999
Q ss_pred eEEEEEEecC-CCcceeEEEEEEe
Q psy15734 100 GWYMCQINTV-PMTSQKGYLQVVV 122 (314)
Q Consensus 100 G~Y~C~~~~~-~~~~~~~~l~v~~ 122 (314)
|.|+|.+.|. |.....+.|.|.+
T Consensus 71 G~Y~C~a~N~~G~~~~~~~L~V~~ 94 (95)
T cd05730 71 AEYTCIAENKAGEQEAEIHLKVFA 94 (95)
T ss_pred EEEEEEEEcCCCeEEEEEEEEEEe
Confidence 9999999876 5556677777764
No 119
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.41 E-value=4.4e-12 Score=84.42 Aligned_cols=82 Identities=21% Similarity=0.292 Sum_probs=60.6
Q ss_pred CCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEe---CCceeEEEEEeeecCCCCeEEEEEEecC-CC
Q psy15734 36 GKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF---NDHRSWFLHLRDVQETDRGWYMCQINTV-PM 111 (314)
Q Consensus 36 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~ 111 (314)
|+.+.|.|.+.+.|.+.+.|++++ ..+. ....++.+.. .......|.|.++..+|+|.|+|.+.|. |.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~-~~i~-------~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~ 72 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKED-RIIN-------PEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGE 72 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCC-EECC-------CCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCc
Confidence 789999999999999999999954 3221 1123443332 1222347999999999999999999876 66
Q ss_pred cceeEEEEEEeCCc
Q psy15734 112 TSQKGYLQVVVPPR 125 (314)
Q Consensus 112 ~~~~~~l~v~~~p~ 125 (314)
....+.|.|..+|.
T Consensus 73 ~~~~~~L~V~~~P~ 86 (88)
T cd05735 73 DRGIIQLTVQEPPD 86 (88)
T ss_pred ceEEEEEEEeCCCC
Confidence 67788888887764
No 120
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.41 E-value=5.3e-12 Score=85.64 Aligned_cols=91 Identities=21% Similarity=0.380 Sum_probs=63.9
Q ss_pred CcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEe
Q psy15734 28 VANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQIN 107 (314)
Q Consensus 28 ~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 107 (314)
.+.+.+.+|+++.|.|.+.+.+.+.+.|++.++..+..... ....+.|+.+.......+.|.|.+++.+|+|.|+|.+.
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~ 82 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDK-RALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLY 82 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccc-cccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEe
Confidence 45678999999999999988777899999755433322111 11234576664433445689999999999999999997
Q ss_pred cCCCcceeEEEE
Q psy15734 108 TVPMTSQKGYLQ 119 (314)
Q Consensus 108 ~~~~~~~~~~l~ 119 (314)
.....+..+.|.
T Consensus 83 ~~~~~~~~~~~~ 94 (95)
T cd05717 83 TMPVQTAKATVT 94 (95)
T ss_pred cCCCceEEEEEE
Confidence 655445555554
No 121
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.41 E-value=2.2e-12 Score=84.27 Aligned_cols=82 Identities=20% Similarity=0.250 Sum_probs=57.9
Q ss_pred CcEEEEEEecC--CCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcc
Q psy15734 37 KEALMACVVEN--LREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTS 113 (314)
Q Consensus 37 ~~~~l~C~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~ 113 (314)
+++.|.|.+.+ ...+.+.|++ +++.+.. ...+.++.........+.|.|.+++.+|+|+|+|.+.+. +..+
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~-dg~~i~~-----~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~ 74 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSF-NGHLIDF-----QKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLS 74 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEE-CCEECcc-----cCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceE
Confidence 47899999976 4578999999 4454421 012224433221112237999999999999999999775 5667
Q ss_pred eeEEEEEEeCC
Q psy15734 114 QKGYLQVVVPP 124 (314)
Q Consensus 114 ~~~~l~v~~~p 124 (314)
+.+.|.|.+||
T Consensus 75 a~a~L~V~~pP 85 (85)
T cd05853 75 AAADLIVRGPP 85 (85)
T ss_pred EEEEEEEecCC
Confidence 88899998876
No 122
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.41 E-value=3.1e-12 Score=86.04 Aligned_cols=81 Identities=23% Similarity=0.327 Sum_probs=57.4
Q ss_pred CeEEcCCCcceeec---CccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecC-CCCCeEE
Q psy15734 176 PMLTIPNQLEGAFV---SQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSIL-SHQFGSY 251 (314)
Q Consensus 176 p~~~~~~~~~~v~~---g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~-~~d~G~Y 251 (314)
|.|...+....+.. |+.+.|.|.+.|+|.|.+.|++++ ..+......... ..++ .|.|.++. .+|+|.|
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~-~~l~~~~~~~~~-~~~~-----~L~i~~~~~~~d~G~Y 74 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNG-TEIDDEPDSRYS-LVGG-----NLVISNPSKAKDAGRY 74 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECC-EECCCCCCCCEE-EECC-----EEEEecCCccCCCEEE
Confidence 45555565554443 467999999999999999999974 333222222222 2334 89998887 4899999
Q ss_pred EEEEeeCCCCce
Q psy15734 252 RCVAVNALGETD 263 (314)
Q Consensus 252 ~C~a~n~~g~~~ 263 (314)
+|.|.|..|...
T Consensus 75 ~C~a~N~~G~~~ 86 (91)
T cd04967 75 QCLASNIVGTVL 86 (91)
T ss_pred EEEEEcCCCEEE
Confidence 999999999654
No 123
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.40 E-value=1.8e-12 Score=101.54 Aligned_cols=120 Identities=10% Similarity=0.052 Sum_probs=80.9
Q ss_pred CcceeecCccEEEEEEEeecCC-----------ceeEEecCCCeeeecC--Cc---eeeeEeeCCeeeEEEEEEeecCCC
Q psy15734 183 QLEGAFVSQTVELHCHTEAFPA-----------SLNYWTNEKGDMIITG--DD---YEDSRLINGYSCHMTLKIRSILSH 246 (314)
Q Consensus 183 ~~~~v~~g~~~~l~C~~~g~p~-----------p~~~W~~~~~~~~~~~--~~---~~~~~~~~~~~~~s~L~i~~~~~~ 246 (314)
..+.+.+|+++.|.|.+.+.|+ +.+.|+|++....... .+ ..+...+.+ .....|.|.++..+
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~-~r~~~L~I~~v~~~ 108 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIG-DRSENLWIGNVINI 108 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCcccccccccccee-cCCCeEEECCCChH
Confidence 3456789999999999988653 4889999753322211 11 000001000 01238999999999
Q ss_pred CCeEEEEEEeeCCCCceeEEEEEEEecCCCeeEEEEccccccEeEEEEEee-----ccCCCccceE
Q psy15734 247 QFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASN-----GVVPSVSHRI 307 (314)
Q Consensus 247 d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~C~a~~-----~~~~~~~w~v 307 (314)
|+|.|+|.|.|..+.....+.|.|...+ . ...+..++...++|.+.+ .+.|+|+|.-
T Consensus 109 DsG~Y~C~a~N~~~~~~~~i~L~V~~~~-~---~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyK 170 (227)
T PHA02826 109 DEGIYICTISSGNICEESTIRLTFDSGT-I---NYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYK 170 (227)
T ss_pred HCEEEEEEEEECCcceEEEEEEEEecCC-c---cceEecCCCEEEEeeCCCCccccCCCceEEEEE
Confidence 9999999999999888888888885432 1 123345666789999874 3568999953
No 124
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.39 E-value=4.6e-12 Score=85.48 Aligned_cols=85 Identities=15% Similarity=0.187 Sum_probs=60.2
Q ss_pred CCcceeecCccEEEEEEEeecCCceeEEecCCCeeee-------cCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734 182 NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMII-------TGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV 254 (314)
Q Consensus 182 ~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~-------~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~ 254 (314)
+++..+.+|+++.|.|.+.+.|.+.+.|++.++..+. ...++...... ....+|.|.+++.+|+|.|+|.
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~---~~~~sL~I~~v~~~DsG~Y~C~ 80 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRAS---WHELSISISDVSLSDEGQYTCS 80 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECC---CCcEEEEECcCCcccCEEEEEE
Confidence 3567889999999999999999999999875433221 22233321111 1234899999999999999999
Q ss_pred EeeCCCCceeEEEEEE
Q psy15734 255 AVNALGETDGFIKVYV 270 (314)
Q Consensus 255 a~n~~g~~~~~~~l~V 270 (314)
+.+..+ ......|+|
T Consensus 81 ~~t~~~-~~~~~~l~v 95 (95)
T cd07701 81 LFTMPV-KTSKAYLTV 95 (95)
T ss_pred eEeecC-ccEEEEEEC
Confidence 998543 366666654
No 125
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.39 E-value=6.2e-12 Score=83.58 Aligned_cols=82 Identities=21% Similarity=0.327 Sum_probs=61.6
Q ss_pred ceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCcee
Q psy15734 185 EGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDG 264 (314)
Q Consensus 185 ~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 264 (314)
..+..|+++.|.|.+.+.|.+.+.|++++. .+........... ......|.|.++..+|+|.|.|.+.|..|....
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~-~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~ 79 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGK-PFKKEHRIGGYKV---RKKKWTLILESVVPSDSGKYTCIVENKYGSINH 79 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCE-ECcccCceeEEEc---cCcEEEEEEeECCcccCEEEEEEEEECCceEEE
Confidence 456789999999999999999999999743 3332222211111 112348999999999999999999999999888
Q ss_pred EEEEEE
Q psy15734 265 FIKVYV 270 (314)
Q Consensus 265 ~~~l~V 270 (314)
++.|.|
T Consensus 80 ~~~l~v 85 (85)
T cd05729 80 TYKVDV 85 (85)
T ss_pred EEEEeC
Confidence 887764
No 126
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.39 E-value=2.2e-12 Score=85.56 Aligned_cols=78 Identities=22% Similarity=0.340 Sum_probs=62.0
Q ss_pred cCCCcceeecCccEEEEEEEee-cCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeC
Q psy15734 180 IPNQLEGAFVSQTVELHCHTEA-FPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNA 258 (314)
Q Consensus 180 ~~~~~~~v~~g~~~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~ 258 (314)
.++....+.+|++++|.|.+.+ .|.+.+.|++++.... . .. ...++ .|.|.+++.+|+|.|+|.|.|.
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~--~-~~---~~~~~-----~L~I~~v~~~DsG~Y~C~a~n~ 74 (85)
T cd05754 6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLP--S-RA---MDFNG-----ILTIRNVQLSDAGTYVCTGSNM 74 (85)
T ss_pred cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCC--C-cc---cccCC-----EEEECCCCHHHCEEEEEEEecc
Confidence 4566778899999999999975 7889999999754321 1 11 11223 8999999999999999999999
Q ss_pred CCCceeEEEE
Q psy15734 259 LGETDGFIKV 268 (314)
Q Consensus 259 ~g~~~~~~~l 268 (314)
.|...+++.|
T Consensus 75 ~g~~~~~~~l 84 (85)
T cd05754 75 LDTDEATATL 84 (85)
T ss_pred CCeEeEEEEE
Confidence 9999888766
No 127
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.38 E-value=4.6e-12 Score=81.62 Aligned_cols=73 Identities=18% Similarity=0.355 Sum_probs=52.7
Q ss_pred EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcceeEE
Q psy15734 39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQKGY 117 (314)
Q Consensus 39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~ 117 (314)
+.|.|.+.|.|.|.+.|++++ ..+. ....++.+...+.....|.|.+++.+|+|.|+|.+.|. |.....+.
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~-~~i~-------~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 72 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNN-EMLT-------YNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNAR 72 (75)
T ss_pred CEEEEEEeecCCCeEEEEECC-EECC-------CCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEE
Confidence 579999999999999999954 3321 12235555444333447999999999999999999775 55555555
Q ss_pred EE
Q psy15734 118 LQ 119 (314)
Q Consensus 118 l~ 119 (314)
|.
T Consensus 73 l~ 74 (75)
T cd05744 73 LD 74 (75)
T ss_pred Ee
Confidence 54
No 128
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.38 E-value=6.7e-12 Score=83.22 Aligned_cols=82 Identities=20% Similarity=0.183 Sum_probs=55.8
Q ss_pred CcEEEEEEecCCCce--EEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcc
Q psy15734 37 KEALMACVVENLREY--KVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTS 113 (314)
Q Consensus 37 ~~~~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~ 113 (314)
++++|.|.+.+.|.+ .+.|+++ +..+... ..+.++.........+.|.|.+++.+|+|.|+|.+.|. +..+
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~-g~~i~~~-----~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 74 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFN-GVPIDFD-----KDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLS 74 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEEC-CeEeecc-----CCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEE
Confidence 478999999987765 6799994 4443211 11122221111122347999999999999999999775 5567
Q ss_pred eeEEEEEEeCC
Q psy15734 114 QKGYLQVVVPP 124 (314)
Q Consensus 114 ~~~~l~v~~~p 124 (314)
....|.|..+|
T Consensus 75 ~~~~l~V~~pP 85 (85)
T cd04970 75 ASADLIVRGPP 85 (85)
T ss_pred EEEEEEEECCC
Confidence 77888888765
No 129
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.38 E-value=8e-12 Score=85.83 Aligned_cols=95 Identities=20% Similarity=0.326 Sum_probs=60.3
Q ss_pred CCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEE--eeecCCC
Q psy15734 21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHL--RDVQETD 98 (314)
Q Consensus 21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i--~~~~~~d 98 (314)
+|.|...+..+.+.+|+++.|.|.+.+.|.+.+.|+|++ ..+.... .....+.....++. ...+.+ .+++.+|
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g-~~l~~~~---~~~~~~~~~~~~~~-~~~~~i~~~~~~~~D 75 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNG-QPLETDK---DDPRSHRIVLPSGS-LFFLRVVHGRKGRSD 75 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECC-EECcccc---CCCCcceEEecCCc-EEEEEeeccCCCcCc
Confidence 588888899999999999999999999999999999954 3322100 00011111111111 112222 2346899
Q ss_pred CeEEEEEEecCC-C-cceeEEEEE
Q psy15734 99 RGWYMCQINTVP-M-TSQKGYLQV 120 (314)
Q Consensus 99 ~G~Y~C~~~~~~-~-~~~~~~l~v 120 (314)
+|.|+|.+.|.. . .+..+.|.|
T Consensus 76 ~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 76 EGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred CEEEEEEEEccccceecceEEEEe
Confidence 999999998763 3 344445544
No 130
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.37 E-value=7.3e-12 Score=84.00 Aligned_cols=83 Identities=25% Similarity=0.377 Sum_probs=59.3
Q ss_pred CCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcce
Q psy15734 36 GKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQ 114 (314)
Q Consensus 36 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~ 114 (314)
|+++.|.|.+.+.|.+.+.|++++...+.... .......++.+..+ +.|.|.+++.+|+|.|+|.+.|. |....
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~-~~~~~~~r~~v~~~----~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 75 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSY-QPPQSSSRFSVSQT----GDLTITNVQRSDVGYYICQTLNVAGSILT 75 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecc-cCCCCCCeEEECCC----CeEEEeeCChhhCEEEEEEEEcCCCceEE
Confidence 78999999999999999999996543222111 11122345554332 37999999999999999999875 56666
Q ss_pred eEEEEEEeC
Q psy15734 115 KGYLQVVVP 123 (314)
Q Consensus 115 ~~~l~v~~~ 123 (314)
.+.|.|...
T Consensus 76 ~~~l~V~~~ 84 (90)
T cd05726 76 KAYLEVTDV 84 (90)
T ss_pred EEEEEEeec
Confidence 777887753
No 131
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.37 E-value=7.6e-12 Score=81.56 Aligned_cols=67 Identities=22% Similarity=0.352 Sum_probs=51.1
Q ss_pred CcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEe
Q psy15734 28 VANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQIN 107 (314)
Q Consensus 28 ~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 107 (314)
|+...+.+|+.+.|.|.+.+. .+.+.|+|++ ..+ ..+.++.+.. ..|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g-~~l--------~~~~~~~~~~-----~~L~I~~~~~~DsG~Y~C~a~ 65 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDG-VQL--------GENNRTRITG-----EEVQIKDAVPRDSGLYACVTS 65 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC-CceEEEeeCC-cCC--------CCCceEEEeC-----CEEEECCCChhhCEEEEEEEe
Confidence 456788999999999999885 5689999954 332 2233444432 179999999999999999997
Q ss_pred cC
Q psy15734 108 TV 109 (314)
Q Consensus 108 ~~ 109 (314)
+.
T Consensus 66 n~ 67 (79)
T cd04973 66 SP 67 (79)
T ss_pred CC
Confidence 64
No 132
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.36 E-value=5.1e-12 Score=81.17 Aligned_cols=71 Identities=21% Similarity=0.408 Sum_probs=52.7
Q ss_pred CCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcce
Q psy15734 36 GKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQ 114 (314)
Q Consensus 36 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~ 114 (314)
|+++.|.|.+.+.|.+.+.|++++. .+ ..+.++.+..+ +.|.|.+++.+|+|.|+|.+.|. +....
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~-~~--------~~~~~~~~~~~----~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~ 67 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTE-LL--------TNSSRICIWPD----GSLEILNVTKSDEGKYTCFAENFFGKANS 67 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCE-Ec--------ccCCCEEECCC----CeEEEccCChhHCEEEEEEEECCCCceEE
Confidence 7889999999999999999999553 22 22345444332 27999999999999999999876 44444
Q ss_pred eEEEE
Q psy15734 115 KGYLQ 119 (314)
Q Consensus 115 ~~~l~ 119 (314)
.+.|.
T Consensus 68 ~~~l~ 72 (73)
T cd04969 68 TGSLS 72 (73)
T ss_pred EEEEE
Confidence 45544
No 133
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.36 E-value=7.4e-12 Score=83.14 Aligned_cols=80 Identities=15% Similarity=0.285 Sum_probs=55.4
Q ss_pred eEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-
Q psy15734 31 VTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV- 109 (314)
Q Consensus 31 ~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~- 109 (314)
..+.+|+.+.|.|.+.+.|.+.+.|++++ ..+.... ....+... ...+.|.|.+++.+|+|.|+|.+.|.
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g-~~l~~~~-----~~~~~~~~---~~~~~l~i~~~~~~D~G~Y~C~a~N~~ 74 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNG-KEFKQEH-----RIGGYKVR---NQHWSLIMESVVPSDKGNYTCVVENEY 74 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECC-EECCCCC-----ceeeeEEe---CCceEEEEccCCcccCEEEEEEEEeCC
Confidence 45788999999999999999999999954 3322100 00011111 12347999999999999999999875
Q ss_pred CCcceeEEEE
Q psy15734 110 PMTSQKGYLQ 119 (314)
Q Consensus 110 ~~~~~~~~l~ 119 (314)
|.....+.|.
T Consensus 75 G~~~~~~~l~ 84 (85)
T cd05857 75 GSINHTYHLD 84 (85)
T ss_pred CEEEEEEEEE
Confidence 4445555554
No 134
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.36 E-value=7.2e-12 Score=85.39 Aligned_cols=88 Identities=19% Similarity=0.183 Sum_probs=59.2
Q ss_pred ceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734 30 NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV 109 (314)
Q Consensus 30 ~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 109 (314)
...+..|+.+.|.|.+.|.|.|.+.|+|++ ..+.............+ ........|.|.+++.+|+|.|+|.+.|.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg-~~l~~~~~~~~~~~~~~---~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~ 87 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDN-RTLIENLTEITTSEHNV---QETRYVSKLKLIRAKEEDSGLYTALAQNE 87 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECC-EECcCCcceEEeccccc---cceeeccEEEEeeCCHHHCEEEEEEEEcC
Confidence 677889999999999999999999999944 44321111101000000 00011237999999999999999999875
Q ss_pred -CCcceeEEEEEE
Q psy15734 110 -PMTSQKGYLQVV 121 (314)
Q Consensus 110 -~~~~~~~~l~v~ 121 (314)
+..+..+.|.|.
T Consensus 88 ~g~~~~t~~l~V~ 100 (101)
T cd05859 88 DAVKSYTFALQIQ 100 (101)
T ss_pred CceEEEEEEEEEE
Confidence 455556666664
No 135
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.35 E-value=7.4e-12 Score=81.06 Aligned_cols=74 Identities=24% Similarity=0.346 Sum_probs=52.4
Q ss_pred CCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcce
Q psy15734 36 GKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQ 114 (314)
Q Consensus 36 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~ 114 (314)
|+++.|.|.+.+.|.+.+.|++++ ..+... ....++... .+.|.|.+++.+|+|.|+|.+.|. +....
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g-~~i~~~-----~~~~~~~~~-----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 69 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSING-APIEGT-----DPDPRRHVS-----SGALILTDVQPSDTAVYQCEARNRHGNLLA 69 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECC-EECCCC-----CCCceEEee-----CCEEEECCCChhhCEEEEEEEECCCCeEEE
Confidence 789999999999999999999944 432210 011233221 237999999999999999999875 44555
Q ss_pred eEEEEE
Q psy15734 115 KGYLQV 120 (314)
Q Consensus 115 ~~~l~v 120 (314)
.+.|.|
T Consensus 70 ~~~l~V 75 (76)
T cd05867 70 NAHVHV 75 (76)
T ss_pred EEEEEE
Confidence 555654
No 136
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.35 E-value=2.3e-11 Score=81.35 Aligned_cols=79 Identities=20% Similarity=0.336 Sum_probs=57.8
Q ss_pred CcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEe
Q psy15734 28 VANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQIN 107 (314)
Q Consensus 28 ~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 107 (314)
+....+.+|++++|.|.+.+. .+.+.|++++. .+ ...++.+..+ ...|.|.+++.+|+|.|+|.+.
T Consensus 10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~-~l---------~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~ 75 (91)
T cd05740 10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGS-LL---------VPPRLQLSND---NRTLTFNNVTRSDTGHYQCEAS 75 (91)
T ss_pred cCccccccCCcEEEEEEeCCC-CCEEEEEECCE-EC---------CCCCEEEeCC---CCEEEECcCChhhCEEEEEEEE
Confidence 457789999999999999998 89999999543 22 1233333322 1279999999999999999998
Q ss_pred cCCCc--ceeEEEEE
Q psy15734 108 TVPMT--SQKGYLQV 120 (314)
Q Consensus 108 ~~~~~--~~~~~l~v 120 (314)
|..+. +..+.|.|
T Consensus 76 N~~G~~~S~~~~L~V 90 (91)
T cd05740 76 NEVSNMTSDPYILNV 90 (91)
T ss_pred cCCCCEEeeeEEEEe
Confidence 76433 34455554
No 137
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.35 E-value=8.9e-12 Score=79.44 Aligned_cols=69 Identities=19% Similarity=0.320 Sum_probs=50.1
Q ss_pred cEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcceeE
Q psy15734 38 EALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQKG 116 (314)
Q Consensus 38 ~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 116 (314)
++.|.|.+.|.|.+.+.|+|++.. + ....++.+..++ .|.|.+++.+|+|.|+|.+.|. +.....+
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~-~--------~~~~~~~~~~~~----~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~ 67 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDM-V--------IPSDYFKIVKEH----NLQVLGLVKSDEGFYQCIAENDVGNVQASA 67 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeE-C--------CCCCCEEEEecC----CEEEEcCCcccCEEEEEEEEcCCCEEEEEE
Confidence 478999999999999999996532 2 123344443332 5888999999999999999875 4445555
Q ss_pred EEE
Q psy15734 117 YLQ 119 (314)
Q Consensus 117 ~l~ 119 (314)
.|.
T Consensus 68 ~L~ 70 (71)
T cd05723 68 QLI 70 (71)
T ss_pred EEE
Confidence 554
No 138
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.34 E-value=1e-11 Score=82.20 Aligned_cols=81 Identities=17% Similarity=0.188 Sum_probs=58.1
Q ss_pred CccEEEEEEEeecCCc--eeEEecCCCeeee--cCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeE
Q psy15734 190 SQTVELHCHTEAFPAS--LNYWTNEKGDMII--TGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGF 265 (314)
Q Consensus 190 g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~--~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 265 (314)
|+++.|.|.+.+.|.+ .+.|.+++..... .....+.. ....+...++|.|.+++.+|+|.|+|.|.|..|....+
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~-~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~ 79 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRS-LQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNS 79 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceeccccccc-ccccceeeeEEEEecCCcccCEEEEEEEeecceEeccc
Confidence 7899999999987654 6689886543211 11110111 11112345699999999999999999999999988888
Q ss_pred EEEEEE
Q psy15734 266 IKVYVN 271 (314)
Q Consensus 266 ~~l~V~ 271 (314)
..|.|+
T Consensus 80 t~~~V~ 85 (86)
T cd05862 80 TIVIVH 85 (86)
T ss_pred EEEEEe
Confidence 888886
No 139
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.34 E-value=9.4e-12 Score=83.31 Aligned_cols=83 Identities=18% Similarity=0.202 Sum_probs=59.0
Q ss_pred CCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCC-ceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734 182 NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGD-DYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG 260 (314)
Q Consensus 182 ~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g 260 (314)
+....+.+|+++.|.|.+.+ |.+.+.|++++........ ..+.... .. .|.|.++..+|+|.|+|.|.|..+
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~-~~-----~L~I~~~~~~D~G~Y~C~a~~~~~ 75 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT-ED-----GLLIRSVSPADAGVYTCQSVEHGF 75 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc-CC-----CEEEccCCHHHCEEEEEEEecCcc
Confidence 45567889999999999987 8889999998544322210 1112211 22 689999999999999999987654
Q ss_pred -CceeEEEEEEE
Q psy15734 261 -ETDGFIKVYVN 271 (314)
Q Consensus 261 -~~~~~~~l~V~ 271 (314)
....++.|.|.
T Consensus 76 ~~~~~~~~l~V~ 87 (89)
T cd04979 76 KQTLATYSLNVL 87 (89)
T ss_pred ceeEeEEEEEEe
Confidence 44566666664
No 140
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.33 E-value=6e-12 Score=81.54 Aligned_cols=73 Identities=18% Similarity=0.285 Sum_probs=51.1
Q ss_pred EEEEEEEee-cCCceeEEecCCCeeeecC-CceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEE
Q psy15734 193 VELHCHTEA-FPASLNYWTNEKGDMIITG-DDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIK 267 (314)
Q Consensus 193 ~~l~C~~~g-~p~p~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 267 (314)
+.|.|.+.+ .|.+.+.|++++..+.... ....+..... ...+.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~--~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKK--KKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeC--CcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 469999875 6889999999754432221 1111111111 12358999999999999999999999998887765
No 141
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.33 E-value=1.9e-11 Score=84.83 Aligned_cols=97 Identities=16% Similarity=0.195 Sum_probs=66.3
Q ss_pred CCCceecCCcc--eEE--EcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEe--C-CceeEEEEEe
Q psy15734 20 DMPRFAEPVAN--VTA--TVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF--N-DHRSWFLHLR 92 (314)
Q Consensus 20 ~~p~~~~~~~~--~~v--~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~L~i~ 92 (314)
.+|.|..++.. +.. ..|.++.|.|.+.+.|.+.+.|+++ +..+.. .+.++.... . ....+.|.|.
T Consensus 3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~-g~~l~~-------~~~r~~~~~~~~~~~~~s~L~I~ 74 (109)
T cd05773 3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKN-GVPLDL-------GNPRYEETTEHTGTVHTSILTII 74 (109)
T ss_pred cccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEEC-CEECCC-------CCCeEEEEeeccCccceeEEEEC
Confidence 46777776652 222 2457899999999999999999994 443321 122332211 1 1113479999
Q ss_pred eec-CCCCeEEEEEEecC-CCcceeEEEEEEeCC
Q psy15734 93 DVQ-ETDRGWYMCQINTV-PMTSQKGYLQVVVPP 124 (314)
Q Consensus 93 ~~~-~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p 124 (314)
++. .+|.|.|+|.+.|. |.....+.|.|..+|
T Consensus 75 ~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 75 NVSAALDYALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred cCCccCCCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence 997 69999999999876 566778888888766
No 142
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.33 E-value=2.3e-11 Score=82.06 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=56.8
Q ss_pred CCceecCCcceEEE---cCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeec-C
Q psy15734 21 MPRFAEPVANVTAT---VGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQ-E 96 (314)
Q Consensus 21 ~p~~~~~~~~~~v~---~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~ 96 (314)
.|.|+..|..+.+. +|+++.|.|.+.|.|.+.+.|++++ ..+.. ..+.++.+.. +.|.|.++. .
T Consensus 1 ~P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g-~~l~~------~~~~~~~~~~-----g~L~i~~~~~~ 68 (94)
T cd05848 1 GPVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNG-TEIDT------ESDYRYSLID-----GNLIISNPSEV 68 (94)
T ss_pred CCeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECC-eECcc------CCCceEEeeC-----CeEEEccCCcc
Confidence 47888888887665 4689999999999999999999954 33321 1112222211 279999875 6
Q ss_pred CCCeEEEEEEecCCC
Q psy15734 97 TDRGWYMCQINTVPM 111 (314)
Q Consensus 97 ~d~G~Y~C~~~~~~~ 111 (314)
+|+|.|+|.+.|..+
T Consensus 69 ~D~G~Y~C~A~N~~G 83 (94)
T cd05848 69 KDSGRYQCLATNSIG 83 (94)
T ss_pred CcCEEEEEEEEcCCC
Confidence 999999999987643
No 143
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.32 E-value=1.9e-11 Score=78.71 Aligned_cols=72 Identities=17% Similarity=0.195 Sum_probs=51.5
Q ss_pred cEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcceeE
Q psy15734 38 EALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQKG 116 (314)
Q Consensus 38 ~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 116 (314)
.+.|.|.+.|.|.+.+.|++++. .+ ..+.++.+...+ ....|.|.+++.+|+|.|+|.+.|. |..+..+
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~-~l--------~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 70 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGK-PL--------KLSGRVQIETTA-SSTSLVIKNAERSDSGKYTLTLKNPAGEKSATI 70 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCE-Ec--------CCCCeEEEEECC-CeEEEEECCCCcCcCEEEEEEEECCCccEEEEE
Confidence 47899999999999999999553 22 223344444332 2347999999999999999999875 4444444
Q ss_pred EEE
Q psy15734 117 YLQ 119 (314)
Q Consensus 117 ~l~ 119 (314)
.|.
T Consensus 71 ~l~ 73 (74)
T cd05748 71 NVK 73 (74)
T ss_pred EEE
Confidence 444
No 144
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.32 E-value=2.5e-11 Score=81.56 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=56.1
Q ss_pred CCceecCCcceEEEcCC---cEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeec-C
Q psy15734 21 MPRFAEPVANVTATVGK---EALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQ-E 96 (314)
Q Consensus 21 ~p~~~~~~~~~~v~~g~---~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~ 96 (314)
.|.|..+|..+.+.++. .+.|.|.+.|.|.+.+.|++++. .+. ....++.+. ++.|.|.++. .
T Consensus 1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~-~i~-------~~~~~~~~~-----~g~L~I~~~~~~ 67 (93)
T cd05849 1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNL-DID-------LTNDRYSMV-----GGNLVINNPDKY 67 (93)
T ss_pred CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCE-Ecc-------CCCCeEEEE-----CCEEEECcCCcC
Confidence 47788887777665544 79999999999999999999543 221 112233332 1379999985 6
Q ss_pred CCCeEEEEEEecCC
Q psy15734 97 TDRGWYMCQINTVP 110 (314)
Q Consensus 97 ~d~G~Y~C~~~~~~ 110 (314)
+|+|.|.|.+.|..
T Consensus 68 ~D~G~Y~C~A~N~~ 81 (93)
T cd05849 68 KDAGRYVCIVSNIY 81 (93)
T ss_pred CCCEEEEEEEEeCc
Confidence 99999999998763
No 145
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.32 E-value=1.6e-11 Score=79.44 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=56.0
Q ss_pred CceecCCcceEEEcCCcEEEEEEecCCCc-eEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734 22 PRFAEPVANVTATVGKEALMACVVENLRE-YKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG 100 (314)
Q Consensus 22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 100 (314)
|.+...|+...+.+|++++|.|.+.+.+. ..+.|++++ ..+. .+ ...|.|.++ .+|+|
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng-~~l~--------~~-----------~~~l~i~~~-~~dsG 59 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNG-KLLE--------TT-----------TNSYRIRAA-NNDSG 59 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECC-EEee--------cc-----------CCeEEEeec-ccCCE
Confidence 45667888899999999999999988664 579999954 3321 01 126999999 99999
Q ss_pred EEEEEEecCCCcceeEEEE
Q psy15734 101 WYMCQINTVPMTSQKGYLQ 119 (314)
Q Consensus 101 ~Y~C~~~~~~~~~~~~~l~ 119 (314)
.|+|.+.+. ..+..+.|.
T Consensus 60 ~Y~C~a~~~-~~S~~v~l~ 77 (78)
T cd05752 60 EYRCQTQGS-SLSDPVHLE 77 (78)
T ss_pred EeEEECCCC-cCCCCEEEe
Confidence 999999653 344444443
No 146
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.32 E-value=1.5e-11 Score=80.04 Aligned_cols=64 Identities=30% Similarity=0.471 Sum_probs=49.1
Q ss_pred CCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734 36 GKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV 109 (314)
Q Consensus 36 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 109 (314)
|+++.|.|.+.+.|.+.+.|++++.. ...+.++.+...+ ..+.|.|.+++.+|+|.|+|.+.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~---------~~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~ 64 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGH---------VPDSARVSITSEG-GYGTLTIRDVKESDQGAYTCEAINT 64 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeE---------CCCCCCEEEEECC-CEEEEEECCCChHHCEEEEEEEEec
Confidence 78999999999999999999995432 1223455444332 2347999999999999999999765
No 147
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.32 E-value=6.2e-12 Score=83.70 Aligned_cols=76 Identities=18% Similarity=0.231 Sum_probs=57.4
Q ss_pred CCcceeecCccEEEEEEE-eecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734 182 NQLEGAFVSQTVELHCHT-EAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG 260 (314)
Q Consensus 182 ~~~~~v~~g~~~~l~C~~-~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g 260 (314)
.....+.+|+.+.|.|.. .|.|.+.+.|++++...........+....+| .|.|.+++.+|+|.|+|.|.|...
T Consensus 10 ~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G-----~L~fs~v~~~D~g~Y~C~A~n~~~ 84 (96)
T cd05727 10 RDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNG-----NLYIAKVEASDRGNYSCFVSSPSS 84 (96)
T ss_pred cCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCC-----cEEEeecCHhhCceeEEEEEeccc
Confidence 345678999999999966 78999999999975433222222223333456 999999999999999999999875
Q ss_pred Cc
Q psy15734 261 ET 262 (314)
Q Consensus 261 ~~ 262 (314)
..
T Consensus 85 ~~ 86 (96)
T cd05727 85 TK 86 (96)
T ss_pred CC
Confidence 44
No 148
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.32 E-value=4.9e-11 Score=80.48 Aligned_cols=79 Identities=18% Similarity=0.197 Sum_probs=57.2
Q ss_pred CCceecCCcceEEEcC---CcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeec-C
Q psy15734 21 MPRFAEPVANVTATVG---KEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQ-E 96 (314)
Q Consensus 21 ~p~~~~~~~~~~v~~g---~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~ 96 (314)
.|.|...|..+.+.+| +++.|.|.+.+.|.+.+.|++++ ..+.. ..+.++.+.. +.|.|.++. .
T Consensus 1 ~P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g-~~l~~------~~~~~~~~~~-----g~L~I~~~~~~ 68 (94)
T cd05850 1 GPVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNG-TEIKF------APESRYTLVA-----GNLVINNPQKA 68 (94)
T ss_pred CCeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECC-EECcc------CCCceEEEEC-----CeEEEccCCcc
Confidence 3778888888877776 57999999999999999999954 33321 1122333322 279998865 6
Q ss_pred CCCeEEEEEEecCCC
Q psy15734 97 TDRGWYMCQINTVPM 111 (314)
Q Consensus 97 ~d~G~Y~C~~~~~~~ 111 (314)
.|+|.|+|.+.|..+
T Consensus 69 ~D~G~Y~C~A~N~~G 83 (94)
T cd05850 69 RDAGSYQCLAINRCG 83 (94)
T ss_pred CcCEEEEEEEEcCcC
Confidence 999999999987643
No 149
>PHA03376 BARF1; Provisional
Probab=99.31 E-value=1.3e-10 Score=84.60 Aligned_cols=132 Identities=22% Similarity=0.381 Sum_probs=82.6
Q ss_pred ceEEEcCCcEEEEEEec---CCCceEEEEEEcCc---eeEEEe-eee----eeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734 30 NVTATVGKEALMACVVE---NLREYKVAWVKMIT---QTILSI-HHK----VVTQNKRVSITFNDHRSWFLHLRDVQETD 98 (314)
Q Consensus 30 ~~~v~~g~~~~l~C~~~---~~~~~~v~W~~~~~---~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 98 (314)
.+.+..|+++.|+|... ..+...|.|+|.+. .-.... ... .+...+++.+..+. ++.+|.|.+++.+|
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~-gnvsLvI~~l~lSD 98 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA-NTFFLVVTAANISH 98 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecC-CeEEEEEEeeeecC
Confidence 67788999999999985 24668999999422 111111 111 12233455554433 56789999999999
Q ss_pred CeEEEEEEecCCCccee-EEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCC
Q psy15734 99 RGWYMCQINTVPMTSQK-GYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDG 164 (314)
Q Consensus 99 ~G~Y~C~~~~~~~~~~~-~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~ 164 (314)
.|.|+|.+......... -.|.+..|-.+....... ....-+...+.|.+.|+|.|.+.|....|
T Consensus 99 dGtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~--dFp~~~~~~i~C~sggfP~P~~~Wle~~~ 163 (221)
T PHA03376 99 DGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERS--QFPDFSVLTVTCTVNAFPHPHVQWLMPEG 163 (221)
T ss_pred CceEEEEEEcCCCceeeeeeeeeeecceEEEEeccc--cCCCCCeeEEEEecCCcCCchheeccccC
Confidence 99999999654322222 234443333332221000 11225677899998889999999998544
No 150
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.31 E-value=9e-12 Score=83.44 Aligned_cols=79 Identities=23% Similarity=0.325 Sum_probs=52.8
Q ss_pred CCcEEEEEEecCCCceEEEEEEcC---ceeEEEeeeeeeecCcCEEEEeC------CceeEEEEEeeecCCCCeEEEEEE
Q psy15734 36 GKEALMACVVENLREYKVAWVKMI---TQTILSIHHKVVTQNKRVSITFN------DHRSWFLHLRDVQETDRGWYMCQI 106 (314)
Q Consensus 36 g~~~~l~C~~~~~~~~~v~W~~~~---~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~L~i~~~~~~d~G~Y~C~~ 106 (314)
|++++|.|.+.+.|.|.+.|+|.+ +..+.. ........... ......|.|.+++.+|+|.|+|.+
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A 74 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGP------DGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLA 74 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCC------CCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEe
Confidence 688999999999999999999953 111110 00011111110 011237999999999999999999
Q ss_pred ecC-CCcceeEEEEE
Q psy15734 107 NTV-PMTSQKGYLQV 120 (314)
Q Consensus 107 ~~~-~~~~~~~~l~v 120 (314)
.|. |.....+.|.|
T Consensus 75 ~N~~G~~~~sa~L~V 89 (90)
T cd04974 75 GNSIGPSHHSAWLTV 89 (90)
T ss_pred ecccCcccCCEEEEe
Confidence 876 55666677766
No 151
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.30 E-value=1.2e-11 Score=79.97 Aligned_cols=74 Identities=14% Similarity=0.272 Sum_probs=52.8
Q ss_pred CCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcce
Q psy15734 36 GKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQ 114 (314)
Q Consensus 36 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~ 114 (314)
|+++.|.|.+.|.|.+.+.|+++ +..+... ...... ..++ ..|.|.+++.+|+|.|+|.+.|. +....
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~-g~~i~~~------~~~~~~-~~~~---~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~ 69 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTN-GVPIEIA------PTDPSR-KVDG---DTIIFSKVQERSSAVYQCNASNEYGYLLA 69 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEEC-CEEcccc------CCCceE-EecC---CEEEECCCCHhhCEEEEEEEEcCCCEEEE
Confidence 78899999999999999999994 4433210 111111 1111 26999999999999999999876 55666
Q ss_pred eEEEEE
Q psy15734 115 KGYLQV 120 (314)
Q Consensus 115 ~~~l~v 120 (314)
.+.|.|
T Consensus 70 ~~~l~v 75 (76)
T cd05868 70 NAFVNV 75 (76)
T ss_pred EEEEEe
Confidence 667765
No 152
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.30 E-value=5.3e-11 Score=79.21 Aligned_cols=71 Identities=25% Similarity=0.400 Sum_probs=54.0
Q ss_pred CCcceEEEcCCcEEEEEEe-cCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEE
Q psy15734 27 PVANVTATVGKEALMACVV-ENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQ 105 (314)
Q Consensus 27 ~~~~~~v~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 105 (314)
.|..+.+.+|+++.|.|.+ .+.|.+.+.|++++ ..+. ..+.++....+ +.|.|.+++.+|+|.|+|.
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g-~~~~-------~~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~ 69 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDG-QPLN-------LDNERVRIVDD----GNLLIAEARKSDEGTYKCV 69 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECC-EECC-------CCCCCEEEccC----CEEEEeECCcccCEEEEEE
Confidence 4567889999999999998 68888999999954 3221 11334443322 3799999999999999999
Q ss_pred EecC
Q psy15734 106 INTV 109 (314)
Q Consensus 106 ~~~~ 109 (314)
+.|.
T Consensus 70 a~N~ 73 (86)
T cd05724 70 ATNM 73 (86)
T ss_pred EEec
Confidence 9875
No 153
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.30 E-value=1.8e-11 Score=82.04 Aligned_cols=83 Identities=22% Similarity=0.321 Sum_probs=52.9
Q ss_pred CCcEEEEEEecCCCceEEEEEEcC---ceeEEEeeee--eeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-
Q psy15734 36 GKEALMACVVENLREYKVAWVKMI---TQTILSIHHK--VVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV- 109 (314)
Q Consensus 36 g~~~~l~C~~~~~~~~~v~W~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~- 109 (314)
|+++.|.|.+.+.|.+.+.|++.+ +..+...... .......+.. .+.....|.|.+++.+|+|.|+|.+.|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 78 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNT--TDKEMEVLYLRNVTFEDAGEYTCLAGNSI 78 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCcee--cCCceeEEEEccCCHHHCEEEEEEEEeCC
Confidence 788999999999999999999843 2211100000 0000000111 1111247999999999999999999775
Q ss_pred CCcceeEEEEE
Q psy15734 110 PMTSQKGYLQV 120 (314)
Q Consensus 110 ~~~~~~~~l~v 120 (314)
|.....+.|.|
T Consensus 79 G~~~~~a~L~V 89 (90)
T cd05858 79 GISHHSAWLTV 89 (90)
T ss_pred CcccceEEEEE
Confidence 56666667765
No 154
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.29 E-value=5.5e-11 Score=80.61 Aligned_cols=84 Identities=15% Similarity=0.192 Sum_probs=58.9
Q ss_pred CcceeecCccEEEEEEEeecCCceeEEecCCCeeee-------cCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734 183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMII-------TGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA 255 (314)
Q Consensus 183 ~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~-------~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a 255 (314)
+...+.+|++++|.|.+.+.|.+.+.|++.++..+. ...++......+ ....|.|.+++.+|+|.|+|.+
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~L~I~~v~~~DsG~Y~C~~ 81 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSA---NELSISISNVSLSDEGRYTCSL 81 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCC---CeeEEEEccCCcccCEEEEEEE
Confidence 456788999999999999999999999875443221 112332211111 1348999999999999999999
Q ss_pred eeCCCCceeEEEEEE
Q psy15734 256 VNALGETDGFIKVYV 270 (314)
Q Consensus 256 ~n~~g~~~~~~~l~V 270 (314)
.+... ...++.|.|
T Consensus 82 ~~~~~-~~~~~~~~v 95 (95)
T cd05717 82 YTMPV-QTAKATVTV 95 (95)
T ss_pred ecCCC-ceEEEEEEC
Confidence 98653 466666654
No 155
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.28 E-value=2.2e-11 Score=75.88 Aligned_cols=65 Identities=18% Similarity=0.268 Sum_probs=48.4
Q ss_pred EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcceeEE
Q psy15734 39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQKGY 117 (314)
Q Consensus 39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~ 117 (314)
++|.|.+.|.|.|.+.|+|+ +..+.. + .....|.|.++..+|+|.|+|.+.|. +..++...
T Consensus 1 ~~l~c~v~g~P~P~v~W~kd-g~~l~~----------~-------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~ 62 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKD-GKLISG----------K-------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRIS 62 (67)
T ss_pred CEEEEEEEEeCCCEEEEEEC-CEECcc----------c-------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEE
Confidence 47999999999999999995 443310 0 01127999999999999999999876 54455556
Q ss_pred EEEE
Q psy15734 118 LQVV 121 (314)
Q Consensus 118 l~v~ 121 (314)
+.|.
T Consensus 63 ~~l~ 66 (67)
T cd05863 63 LELI 66 (67)
T ss_pred EEEE
Confidence 6553
No 156
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.28 E-value=1.2e-10 Score=79.47 Aligned_cols=89 Identities=16% Similarity=0.197 Sum_probs=60.3
Q ss_pred CceecCCcceEEEcCCcEEEEEEecCCCce-EEEEEEcCceeEEEeeeeeeecCcCEEEEeCC---ceeEEEEEeeecCC
Q psy15734 22 PRFAEPVANVTATVGKEALMACVVENLREY-KVAWVKMITQTILSIHHKVVTQNKRVSITFND---HRSWFLHLRDVQET 97 (314)
Q Consensus 22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~L~i~~~~~~ 97 (314)
|.++..+....+.+|+++.|.|.+.+.|.+ .+.|++++ ..+.. ..+.++.+.... .....|.|.+++.+
T Consensus 2 pp~i~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~-~~i~~------~~~~r~~i~~~~~~~~~~s~L~I~~v~~~ 74 (98)
T cd05758 2 PPIITSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKE-NELES------GSSGRYTVETDPSPGGVLSTLTISNTQES 74 (98)
T ss_pred CCeEcCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECC-EEccC------CCCCCEEEEEecCCCceEEEEEECCcccc
Confidence 333455667789999999999999998888 69999954 33221 112355444321 12247999999995
Q ss_pred C-CeEEEEEEecC-CCcceeEE
Q psy15734 98 D-RGWYMCQINTV-PMTSQKGY 117 (314)
Q Consensus 98 d-~G~Y~C~~~~~-~~~~~~~~ 117 (314)
| .|.|+|.+.|. |.....+.
T Consensus 75 d~~G~Y~C~A~N~~G~~~~~~~ 96 (98)
T cd05758 75 DFQTSYNCTAWNSFGSGTAIIS 96 (98)
T ss_pred ccceeEEEEEEcCCCcccEEEE
Confidence 5 89999999875 44444443
No 157
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.27 E-value=5.7e-11 Score=76.53 Aligned_cols=72 Identities=18% Similarity=0.235 Sum_probs=51.5
Q ss_pred CCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcce
Q psy15734 36 GKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQ 114 (314)
Q Consensus 36 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~ 114 (314)
|+.+.|.|.+.+.|.+.+.|++.++..+. ...+...... ++|.|.+++.+|.|.|+|.+.|. +..+.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~--------~~~~~~~~~~----~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~ 68 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLIS--------NSSRTLVYDN----GTLDILITTVKDTGSFTCIASNAAGEATA 68 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEec--------CCCeEEEecC----CEEEEEECChhhCEEEEEEEECCCCeEEE
Confidence 78999999999999999999986654332 1222222222 27999999999999999999875 44444
Q ss_pred eEEEE
Q psy15734 115 KGYLQ 119 (314)
Q Consensus 115 ~~~l~ 119 (314)
.+.|.
T Consensus 69 ~~~l~ 73 (74)
T cd05764 69 TVELH 73 (74)
T ss_pred EEEEE
Confidence 44443
No 158
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.27 E-value=1.8e-11 Score=80.41 Aligned_cols=74 Identities=18% Similarity=0.180 Sum_probs=54.7
Q ss_pred cceeecCccEEEEEEEee-cCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734 184 LEGAFVSQTVELHCHTEA-FPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET 262 (314)
Q Consensus 184 ~~~v~~g~~~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~ 262 (314)
...+.+|++++|.|.+.+ .+.+.+.|++++.. +... ..+ +.|.|.+++.+|+|.|+|.+.|..|..
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~-~~~~-------~~~-----~~l~I~~~~~~dsG~Y~C~~~~~~~~~ 74 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKA-KKYS-------HSN-----SNLSIPQATLSDSGSYHCSGIIGSYDY 74 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceEEEEEECCeE-cccc-------CCC-----ceEEECccCHHHCEEEEEEEEeCCcee
Confidence 346899999999999954 66778999997532 2110 111 389999999999999999999998744
Q ss_pred -eeEEEEEE
Q psy15734 263 -DGFIKVYV 270 (314)
Q Consensus 263 -~~~~~l~V 270 (314)
+..+.|+|
T Consensus 75 ~s~~~~i~~ 83 (83)
T cd05753 75 SSEPVSITV 83 (83)
T ss_pred cCCCEEEEC
Confidence 44555443
No 159
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.27 E-value=2.7e-11 Score=79.51 Aligned_cols=70 Identities=17% Similarity=0.278 Sum_probs=53.2
Q ss_pred CCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734 181 PNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNAL 259 (314)
Q Consensus 181 ~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~ 259 (314)
.|.+..+..|+++.|.|.+.+ |.+.+.|++++..+.....++. ..++ .|.|.+++.+|+|.|+|.|.+..
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~---~~~~-----~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYL---LYRD-----GLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEE---EECC-----cEEEeCCCHHHCEEEEEEEEecc
Confidence 356678899999999999864 6789999997443332223332 2334 89999999999999999998864
No 160
>KOG3515|consensus
Probab=99.26 E-value=1.4e-10 Score=102.90 Aligned_cols=289 Identities=13% Similarity=0.148 Sum_probs=158.0
Q ss_pred CCCCceecCCcceEEEcCCcEEEEEEec--CCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecC
Q psy15734 19 PDMPRFAEPVANVTATVGKEALMACVVE--NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQE 96 (314)
Q Consensus 19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~--~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 96 (314)
..+|.-...........+..+.+.|... +.+.+.+.|..+................. ...... .....|.+...+.
T Consensus 95 ~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~-a~gss~-t~~s~l~~~v~Rk 172 (741)
T KOG3515|consen 95 DYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAG-ALGSSY-TEPSLLKQTVSRK 172 (741)
T ss_pred ccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCccccccc-ccCcee-ccccceeeEEEEe
Confidence 3344433444556667788899999663 46778999998543222211111110100 000000 0112588899999
Q ss_pred CCCeEEEEEEecC--CCccee--EEEEEEeCCc-eeeecCcceeEEecCceEEEEEEec-ccCCCceEEEcCCCceeecC
Q psy15734 97 TDRGWYMCQINTV--PMTSQK--GYLQVVVPPR-ILLDRTSTDVVVREGTEVTLECSAV-GYPEPYVAWRREDGKAINYN 170 (314)
Q Consensus 97 ~d~G~Y~C~~~~~--~~~~~~--~~l~v~~~p~-~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~p~~~W~~~~~~~~~~~ 170 (314)
+|.|+|+|.+.+. ...... ..+.|..+.. +............+|+.+.|.|.+. |+|.+.+.|++. .......
T Consensus 173 a~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~-s~~~~~~ 251 (741)
T KOG3515|consen 173 ADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKD-SRPQSES 251 (741)
T ss_pred cCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccc-cccchhh
Confidence 9999999999653 222222 2333333222 1111112224577899999999765 579999999994 4333221
Q ss_pred --------CeeC------------------------------------CCeEEcCCCcceeecCccEEEEEEE-eecCCc
Q psy15734 171 --------GELV------------------------------------PPMLTIPNQLEGAFVSQTVELHCHT-EAFPAS 205 (314)
Q Consensus 171 --------~~~~------------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p 205 (314)
+... +-...+.+....+..|++..+.|.. .++|++
T Consensus 252 sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~~~~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~ 331 (741)
T KOG3515|consen 252 SLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNLLAASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPA 331 (741)
T ss_pred hcccCCCCCCcccccccccccccchhhhhhccccCccccceeeecccccccccccCcccccccccccccceeccCCCCcc
Confidence 0000 1111122334457789999999866 568888
Q ss_pred eeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCee-EEEEc-
Q psy15734 206 LNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIF-QIRKM- 283 (314)
Q Consensus 206 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~-~~~~~- 283 (314)
.+.|+++. ................+......+........|.|.|+|.+.|.......+..+.+...+.+.+ .....
T Consensus 332 ~i~w~~~~-~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~ 410 (741)
T KOG3515|consen 332 HIAWYKDT-KMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTA 410 (741)
T ss_pred ceeeeccC-cccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceeccccCCchhhhhcccc
Confidence 99999953 3332222111111122222233555667778899999999999886655555554544443332 22211
Q ss_pred ---cccccEeEEEEE-eeccCCCccceEEEEE
Q psy15734 284 ---SRLHMGAYLCIA-SNGVVPSVSHRIMVTV 311 (314)
Q Consensus 284 ---~~~~~g~~~C~a-~~~~~~~~~w~v~l~v 311 (314)
...+.+.+.-.+ .+++.+.+.|.+.+.-
T Consensus 411 v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~ 442 (741)
T KOG3515|consen 411 VVAMEQDHQAAPLPVRGAPAERTFYWTFRLYK 442 (741)
T ss_pred eeeccCccccccCcccCCCcccchhheeccee
Confidence 122222222222 4556779999887653
No 161
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.26 E-value=3.2e-11 Score=81.10 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=55.2
Q ss_pred cceEEEcCCcEEEEEEecC-----CCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEE
Q psy15734 29 ANVTATVGKEALMACVVEN-----LREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYM 103 (314)
Q Consensus 29 ~~~~v~~g~~~~l~C~~~~-----~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 103 (314)
....+.+|+.+.|.|.+.+ .|.+.+.|||++...... ...+.++.. . .+.|.|.+++.+|+|.|+
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~-----~~~~~r~~~--~---~~~L~I~~~~~~DsG~Y~ 76 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIP-----TEERSRMHQ--Q---KDLLWFLPAALEDSGLYT 76 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCccc-----ccccceeee--c---CCeEEEccCCcccCeEEE
Confidence 3566889999999999988 578899999965321110 011223322 1 137999999999999999
Q ss_pred EEEecC-CCcceeEEEE
Q psy15734 104 CQINTV-PMTSQKGYLQ 119 (314)
Q Consensus 104 C~~~~~-~~~~~~~~l~ 119 (314)
|.+.|. +.....+.|.
T Consensus 77 C~~~N~~g~~~~~~~L~ 93 (94)
T cd05756 77 CVVRNSTYCMKVSISLT 93 (94)
T ss_pred EEEcCCCccEEEEEEEE
Confidence 999775 3334444443
No 162
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.26 E-value=3.9e-11 Score=80.14 Aligned_cols=78 Identities=10% Similarity=0.139 Sum_probs=58.2
Q ss_pred ceeecCccEEEEEEEee-----cCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734 185 EGAFVSQTVELHCHTEA-----FPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNAL 259 (314)
Q Consensus 185 ~~v~~g~~~~l~C~~~g-----~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~ 259 (314)
..+.+|.+..|.|...+ +|.|.+.|++++ ..+... ..... .++ .|.|.++..+|+|.|+|.|.|..
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~-~~i~~~-~~~~~--~~~-----~L~I~~v~~~DsG~YtC~~~n~~ 75 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDC-KLLEGD-RKRFV--KGS-----KLLIQNVTEEDAGNYTCKLTFTH 75 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECC-EECCCC-ccEEe--cCC-----EEEEeeCChhhCEEEEEEEEecC
Confidence 45788999999998754 267899999975 333322 22221 333 99999999999999999999999
Q ss_pred CCceeEEEEEEE
Q psy15734 260 GETDGFIKVYVN 271 (314)
Q Consensus 260 g~~~~~~~l~V~ 271 (314)
+.....+...+.
T Consensus 76 ~~~~~~~t~t~~ 87 (92)
T cd05757 76 NGKQYNVTRTIS 87 (92)
T ss_pred CCEEEEEEEEEE
Confidence 887766655443
No 163
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.26 E-value=4.9e-11 Score=77.01 Aligned_cols=73 Identities=22% Similarity=0.342 Sum_probs=50.6
Q ss_pred EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcceeEE
Q psy15734 39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQKGY 117 (314)
Q Consensus 39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~ 117 (314)
++|.|.+.|.|.|.+.|++++..... .....++.+...+ ..|.|.+++.+|+|.|+|.+.|. +.....+.
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~------~~~~~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~ 71 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFP------AARERRMHVMPED---DVFFIVDVKIEDTGVYSCTAQNTAGSISANAT 71 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCC------cccccceEEecCC---CEEEEeeCCcccCEEEEEEEEcCCCEEEeeEE
Confidence 47999999999999999996543211 1122344332221 27999999999999999999875 44455556
Q ss_pred EEE
Q psy15734 118 LQV 120 (314)
Q Consensus 118 l~v 120 (314)
|.|
T Consensus 72 l~V 74 (75)
T cd05763 72 LTV 74 (75)
T ss_pred EEE
Confidence 655
No 164
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.26 E-value=1.4e-10 Score=78.65 Aligned_cols=75 Identities=21% Similarity=0.327 Sum_probs=53.8
Q ss_pred eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeee-----cCCC
Q psy15734 24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDV-----QETD 98 (314)
Q Consensus 24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-----~~~d 98 (314)
|...|....+.+|+++.|.|.+.+.|.+.+.|+|++ ..+.. ..+.+..+..+ +.|.|.++ +.+|
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g-~~l~~------~~~~~~~~~~~----~~l~i~~v~~~~~~~~D 70 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDG-VLLNL------VSDERRQQLPN----GSLLITSVVHSKHNKPD 70 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECC-eECcc------ccCcceEEccC----CeEEEeeeeccCCCCCc
Confidence 455677888999999999999999999999999944 43321 11112222222 25667666 5899
Q ss_pred CeEEEEEEecC
Q psy15734 99 RGWYMCQINTV 109 (314)
Q Consensus 99 ~G~Y~C~~~~~ 109 (314)
.|.|+|.+.|.
T Consensus 71 ~G~Y~C~a~N~ 81 (95)
T cd05722 71 EGFYQCVAQND 81 (95)
T ss_pred CEEEEEEEECC
Confidence 99999999876
No 165
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.25 E-value=3.8e-11 Score=77.85 Aligned_cols=74 Identities=19% Similarity=0.303 Sum_probs=51.7
Q ss_pred CCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcce
Q psy15734 36 GKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQ 114 (314)
Q Consensus 36 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~ 114 (314)
|+++.|.|.+.+.|.+.+.|++++ ..+... ........ ....|.|.+++.+|+|.|+|.+.|. +....
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g-~~~~~~-------~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~ 69 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNG-VPIEEL-------PPDPRRRV---DGGTLILSNVQPNDTAVYQCNASNVHGYLLA 69 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECC-EECCCC-------CCcceEEc---cCCEEEECCCChhhCEEEEEEEEccCCeEEE
Confidence 789999999999999999999954 332211 11111111 1137999999999999999999875 55555
Q ss_pred eEEEEE
Q psy15734 115 KGYLQV 120 (314)
Q Consensus 115 ~~~l~v 120 (314)
.+.|.|
T Consensus 70 ~~~l~V 75 (76)
T cd04978 70 NAFVHV 75 (76)
T ss_pred eEEEEE
Confidence 556654
No 166
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.25 E-value=5.8e-11 Score=75.31 Aligned_cols=67 Identities=22% Similarity=0.310 Sum_probs=48.5
Q ss_pred EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcceeEE
Q psy15734 39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQKGY 117 (314)
Q Consensus 39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~ 117 (314)
++|.|.+.+.|.+.+.|+++++. + ...++.+... +.|.|.+++.+|+|.|+|.+.|. +.....+.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~-~---------~~~~~~~~~~----~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 66 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGE-L---------PKGRAEILDD----KSLKIRNVTAGDEGSYTCEAENMVGKIEASAS 66 (69)
T ss_pred CEEEEECccCCCCEEEEEECCcc-C---------CCCcEEEeeC----CEEEECcCChhHCEEEEEEEEcCCCcEEEEEE
Confidence 57999999999999999996432 1 2234444322 27999999999999999999875 44444444
Q ss_pred EE
Q psy15734 118 LQ 119 (314)
Q Consensus 118 l~ 119 (314)
|.
T Consensus 67 l~ 68 (69)
T cd05725 67 LT 68 (69)
T ss_pred EE
Confidence 44
No 167
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.24 E-value=3.7e-11 Score=76.47 Aligned_cols=69 Identities=19% Similarity=0.287 Sum_probs=48.4
Q ss_pred EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcceeEE
Q psy15734 39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQKGY 117 (314)
Q Consensus 39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~ 117 (314)
+.|.|.+.|.|.+.+.|+|+ +..+.. +.++.. . ...|.|.+++.+|+|.|+|.+.|. +.......
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~-g~~l~~--------~~~~~~--~---~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~ 66 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKN-GKLISE--------KNRTKK--S---GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLT 66 (71)
T ss_pred CEEEeEEEEeCCCEEEEEEC-CEECCC--------CCEEEc--C---CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEE
Confidence 47999999999999999994 443321 112211 1 137999999999999999999875 34455555
Q ss_pred EEEE
Q psy15734 118 LQVV 121 (314)
Q Consensus 118 l~v~ 121 (314)
+.|.
T Consensus 67 ~~~~ 70 (71)
T cd04976 67 FTLV 70 (71)
T ss_pred EEEE
Confidence 5543
No 168
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.24 E-value=3.2e-11 Score=79.50 Aligned_cols=78 Identities=17% Similarity=0.389 Sum_probs=53.6
Q ss_pred ceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734 30 NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV 109 (314)
Q Consensus 30 ~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 109 (314)
.+.+..|+++.|.|.+.+.|.+.+.|++++.. +.. ..... .....+.|.|.+++.+|+|.|+|.+.|.
T Consensus 3 ~~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~-~~~--------~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a~N~ 70 (82)
T cd05856 3 VIARPVGSSVRLKCVASGNPRPDITWLKDNKP-LTP--------TEIGE---SRKKKWTLSLKNLKPEDSGKYTCHVSNR 70 (82)
T ss_pred ceeccCCCeEEEEEEeeEeCCCcEEEEECCcC-CcC--------Cccce---ecCceEEEEEccCChhhCEEEEEEEEcC
Confidence 34567899999999999988899999995532 211 11111 0112247999999999999999999775
Q ss_pred -CCcceeEEEE
Q psy15734 110 -PMTSQKGYLQ 119 (314)
Q Consensus 110 -~~~~~~~~l~ 119 (314)
+..+..+.|.
T Consensus 71 ~G~~~~~~~v~ 81 (82)
T cd05856 71 AGEINATYKVD 81 (82)
T ss_pred CccEEEEEEEe
Confidence 4344444443
No 169
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.23 E-value=1e-10 Score=78.08 Aligned_cols=78 Identities=21% Similarity=0.257 Sum_probs=56.5
Q ss_pred ceeecCccEEEEEEEeecCCceeEEecCCCeee-e----cCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEe-eC
Q psy15734 185 EGAFVSQTVELHCHTEAFPASLNYWTNEKGDMI-I----TGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV-NA 258 (314)
Q Consensus 185 ~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~-~----~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~-n~ 258 (314)
+.+.+|+++.|.|.. +.|.|.+.|++.+.... . ...++. ..++ .|.|.++..+|+|.|+|.|. |.
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~---~~~~-----~L~I~~~~~~DsG~Y~C~a~~~~ 76 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLI---HTER-----GLLLRSLQRSDAGVYTCTAVEHS 76 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEE---EecC-----eEEEeeCChhHCEEEEEEEEccC
Confidence 457789999999997 58999999998432111 1 111221 1222 79999999999999999998 56
Q ss_pred CCCceeEEEEEEE
Q psy15734 259 LGETDGFIKVYVN 271 (314)
Q Consensus 259 ~g~~~~~~~l~V~ 271 (314)
.+.....++|+|.
T Consensus 77 ~~~~~~~~~l~v~ 89 (91)
T cd05871 77 FSQTLAKYTLHVI 89 (91)
T ss_pred CeEEEEEEEEEEe
Confidence 6666777777775
No 170
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.23 E-value=4.5e-11 Score=75.73 Aligned_cols=65 Identities=23% Similarity=0.374 Sum_probs=47.1
Q ss_pred EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcceeE
Q psy15734 39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQKG 116 (314)
Q Consensus 39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~ 116 (314)
+.|.|.+.+.|.+.+.|++++ ..+ ....++.+..+ +.|.|.+++.+|+|.|+|.+.|. |..+...
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g-~~~--------~~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 66 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDG-VQV--------TESGKFHISPE----GYLAIRDVGVADQGRYECVARNTIGYASVSM 66 (69)
T ss_pred CEeEecceEeCCCEEEEEECC-EEC--------CCCCCEEECCC----CEEEECcCChhhCEEEEEEEECCCCcEEEEE
Confidence 579999999999999999954 322 22334444322 27999999999999999999875 4444433
No 171
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.23 E-value=8.1e-11 Score=77.14 Aligned_cols=78 Identities=24% Similarity=0.405 Sum_probs=57.7
Q ss_pred CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734 176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA 255 (314)
Q Consensus 176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a 255 (314)
|.+..++ ..+.+|+++.|.|.+.+.|.+.+.|++++ ..+..... .|.|.++..+|.|.|+|.+
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~-~~~~~~~~--------------~~~~~~~~~~~~g~y~C~~ 64 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNG-SPINSSQN--------------GLFIPNVSPEDSGNYTCRA 64 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETT-EEEEEESS--------------EEEESSEEGGGTEEEEEEE
T ss_pred cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeee-eeeeeeee--------------eeeeeeeccccCEEEEEEE
Confidence 5555555 55899999999999999999999999964 33332111 3677888999999999999
Q ss_pred eeCCC-CceeEEEEEE
Q psy15734 256 VNALG-ETDGFIKVYV 270 (314)
Q Consensus 256 ~n~~g-~~~~~~~l~V 270 (314)
.+..+ ..+..+.|+|
T Consensus 65 ~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 65 SNGSGSNTSTSVNVTV 80 (80)
T ss_dssp EETTEEEEEEEEEEEE
T ss_pred EeCCCCeEeeeEEeeC
Confidence 99664 3456666654
No 172
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.22 E-value=7.1e-11 Score=75.26 Aligned_cols=69 Identities=22% Similarity=0.371 Sum_probs=48.0
Q ss_pred EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcceeEE
Q psy15734 39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQKGY 117 (314)
Q Consensus 39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~ 117 (314)
+.|.|.+.|.|.+.+.|++++.. +.. .+..... ..+.|.|.+++.+|+|.|+|.+.|. +.....+.
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~-~~~---------~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 67 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGP-LSP---------NRTKKLN---NNKTLQLDNVLESDDGEYVCTAENSEGSARHHYT 67 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcC-CCC---------CceeEEc---CCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEE
Confidence 47999999999999999996542 211 1111111 1237999999999999999999876 44444455
Q ss_pred EEE
Q psy15734 118 LQV 120 (314)
Q Consensus 118 l~v 120 (314)
|.|
T Consensus 68 l~V 70 (71)
T cd05876 68 VTV 70 (71)
T ss_pred EEE
Confidence 544
No 173
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.21 E-value=6.4e-11 Score=78.70 Aligned_cols=73 Identities=21% Similarity=0.138 Sum_probs=58.4
Q ss_pred CCcceeecCccEEEEEE-EeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCe-EEEEEEeeCC
Q psy15734 182 NQLEGAFVSQTVELHCH-TEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFG-SYRCVAVNAL 259 (314)
Q Consensus 182 ~~~~~v~~g~~~~l~C~-~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G-~Y~C~a~n~~ 259 (314)
...+.+.+|+.+.|.|. ..|.|.|.+.|++++...+.. ..++....+| .|.|.++..+|+| .|.|.|.|..
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~--~~Ri~~~~~G-----nL~fs~v~~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQ--DERVSMGQNG-----NLYFANVEEQDSHPDYICHAHFPG 82 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccc--cccEEECCCc-----eEEEEEEehhhCCCCeEEEEEccc
Confidence 46678999999999997 699999999999865443332 3344555556 9999999999999 8999999986
Q ss_pred CC
Q psy15734 260 GE 261 (314)
Q Consensus 260 g~ 261 (314)
..
T Consensus 83 ~~ 84 (95)
T cd05845 83 LR 84 (95)
T ss_pred cc
Confidence 43
No 174
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.21 E-value=1.3e-10 Score=77.68 Aligned_cols=83 Identities=22% Similarity=0.258 Sum_probs=56.1
Q ss_pred CCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEE
Q psy15734 27 PVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI 106 (314)
Q Consensus 27 ~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 106 (314)
++..+.+.+|+++.|.|.+.+ +.+.+.|++++.. +.... ....++.... ..|.|.+++.+|+|.|+|.+
T Consensus 2 ~~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~-~~~~~----~~~~~~~~~~-----~~L~I~~~~~~D~G~Y~C~a 70 (89)
T cd04979 2 EEKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGP-LQRKE----EPEERLLVTE-----DGLLIRSVSPADAGVYTCQS 70 (89)
T ss_pred cceEEEEECCCcEEEEEeCCC-CCceEEEEECCcc-ccccc----CcCceEEEcC-----CCEEEccCCHHHCEEEEEEE
Confidence 456788999999999999977 7789999996543 11100 0112333322 15999999999999999999
Q ss_pred ecCCCcce--eEEEEE
Q psy15734 107 NTVPMTSQ--KGYLQV 120 (314)
Q Consensus 107 ~~~~~~~~--~~~l~v 120 (314)
.+.+.... ...|.|
T Consensus 71 ~~~~~~~~~~~~~l~V 86 (89)
T cd04979 71 VEHGFKQTLATYSLNV 86 (89)
T ss_pred ecCccceeEeEEEEEE
Confidence 76543433 344444
No 175
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.21 E-value=1.2e-10 Score=74.89 Aligned_cols=71 Identities=27% Similarity=0.373 Sum_probs=49.3
Q ss_pred EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecCCCc--ceeE
Q psy15734 39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMT--SQKG 116 (314)
Q Consensus 39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~ 116 (314)
++|.|.+.|.|.+.+.|++++ ..+. ...+.++.... ++.|.|.+++.+|+|.|+|.+.|..+. +..+
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~-~~~~------~~~~~~~~~~~----~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a 69 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDF-LPVD------TTSNGRIKQLR----SGALQIENSEESDQGKYECVATNSAGTRYSAPA 69 (74)
T ss_pred CEEEEEEeEecCCEEEEEECC-EECc------cCCCCCEEEcC----CcEEEECCCChhhCEEEEEEEECCCCceEcccE
Confidence 479999999999999999954 3221 11234544432 237999999999999999999876443 3344
Q ss_pred EEEE
Q psy15734 117 YLQV 120 (314)
Q Consensus 117 ~l~v 120 (314)
.|.|
T Consensus 70 ~l~v 73 (74)
T cd05738 70 NLYV 73 (74)
T ss_pred EEEE
Confidence 4443
No 176
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.20 E-value=5.7e-11 Score=75.00 Aligned_cols=67 Identities=21% Similarity=0.229 Sum_probs=47.2
Q ss_pred EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcceeEE
Q psy15734 39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQKGY 117 (314)
Q Consensus 39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~ 117 (314)
+.|.|.+.|.|.+.+.|+|++ ..+.. +.++ .. ...|.|.++..+|+|.|+|.+.|. |..+....
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g-~~l~~--------~~~~--~~----~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t 65 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNG-QLIVL--------NHTF--KR----GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHT 65 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECC-EECCC--------CCEE--cc----CCEEEECcCCHHHCEEEEEEEEECCCceeeEEE
Confidence 478999999999999999954 43321 1111 11 126999999999999999999876 43444444
Q ss_pred EEE
Q psy15734 118 LQV 120 (314)
Q Consensus 118 l~v 120 (314)
+.+
T Consensus 66 ~~l 68 (70)
T cd05864 66 FQL 68 (70)
T ss_pred EEE
Confidence 444
No 177
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.20 E-value=5.8e-11 Score=79.31 Aligned_cols=76 Identities=18% Similarity=0.177 Sum_probs=53.2
Q ss_pred ceeecCccEEEEEEEeecCCceeEEecCCCeeeec-------------CCceeeeEeeCCeeeEEEEEEeecCCCCCeEE
Q psy15734 185 EGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIIT-------------GDDYEDSRLINGYSCHMTLKIRSILSHQFGSY 251 (314)
Q Consensus 185 ~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-------------~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y 251 (314)
+.+.+|++++|.|.+.+.+.+.+.|++++...... .+++..... ........|+|.++..+|+|.|
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~-~~~~g~~~L~I~~l~~sDsgtY 80 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRN-LWDQGSFPLIIKNLKIEDSDTY 80 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecc-cCCCCeEEEEECCCCHHHCEEE
Confidence 35789999999999999999999999764332111 111111110 0011245899999999999999
Q ss_pred EEEEeeCCCC
Q psy15734 252 RCVAVNALGE 261 (314)
Q Consensus 252 ~C~a~n~~g~ 261 (314)
.|.+.|..+.
T Consensus 81 ~C~v~~~~~~ 90 (94)
T cd07690 81 ICEVEDKKEE 90 (94)
T ss_pred EEEECCccce
Confidence 9999987754
No 178
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.19 E-value=9.2e-11 Score=77.07 Aligned_cols=77 Identities=19% Similarity=0.289 Sum_probs=50.4
Q ss_pred CCcEEEEEEecCCCceEEEEEEcCc--eeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCc
Q psy15734 36 GKEALMACVVENLREYKVAWVKMIT--QTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMT 112 (314)
Q Consensus 36 g~~~~l~C~~~~~~~~~v~W~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~ 112 (314)
|+++.|.|.+.+.|.+.+.|++... ..+.... .....++... ..+.|.|.+++.+|+|.|+|.+.|. +..
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~---~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 73 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRP---NHVRGNVVVT----NIGQLVIYNAQPQDAGLYTCTARNSGGLL 73 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecC---CcccCCEEEc----cccEEEEccCCcccCEEEEEEEecCCceE
Confidence 7899999999999999999999632 1111000 0001112111 1237999999999999999999875 444
Q ss_pred ceeEEEE
Q psy15734 113 SQKGYLQ 119 (314)
Q Consensus 113 ~~~~~l~ 119 (314)
...+.|.
T Consensus 74 ~~~~~l~ 80 (81)
T cd05765 74 RANFPLS 80 (81)
T ss_pred EEEEEEe
Confidence 4444444
No 179
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.18 E-value=1.3e-10 Score=76.83 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=51.0
Q ss_pred CCcEEEEEEecCC--CceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCc
Q psy15734 36 GKEALMACVVENL--REYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMT 112 (314)
Q Consensus 36 g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~ 112 (314)
|+++.|.|.+.+. +.+.+.|++++........ ...+..........+.|.|.+++.+|+|.|+|.+.|. +..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~ 75 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKS-----MVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQ 75 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceE-----eecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCce
Confidence 7899999999988 7899999885532211000 0001111111112348999999999999999999765 344
Q ss_pred ceeEEEEE
Q psy15734 113 SQKGYLQV 120 (314)
Q Consensus 113 ~~~~~l~v 120 (314)
+....|.|
T Consensus 76 ~~s~~v~v 83 (84)
T cd05742 76 KESTKVNI 83 (84)
T ss_pred EEEEEEEE
Confidence 55555544
No 180
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.18 E-value=2.2e-10 Score=72.28 Aligned_cols=58 Identities=17% Similarity=0.324 Sum_probs=42.2
Q ss_pred CCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734 36 GKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV 109 (314)
Q Consensus 36 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 109 (314)
|++++|.|.+.|.|.|.+.|++++.. +. ...++... ...|.|.++ .|+|.|+|.+.|.
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~-l~--------~~~~~~~~-----~~~L~i~~~--~d~G~Y~C~A~N~ 58 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEE-LT--------KEDEMPVG-----RNVLELTNI--YESANYTCVAISS 58 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEE-CC--------CccceecC-----ccEEEEecc--ccCeeEEEEEEeC
Confidence 68899999999999999999995532 21 11122111 126889987 4899999999775
No 181
>smart00409 IG Immunoglobulin.
Probab=99.18 E-value=7.4e-10 Score=73.33 Aligned_cols=83 Identities=22% Similarity=0.380 Sum_probs=62.2
Q ss_pred cceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCce
Q psy15734 184 LEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETD 263 (314)
Q Consensus 184 ~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 263 (314)
...+..|+++.|.|.+.+.+.+.+.|+++++..+....++....... ...|.|.++..+|+|.|.|.+.+..+...
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~ 78 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS----NSTLTISNVTPEDSGTYTCAATNSSGSAS 78 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC----eeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence 45678999999999999998899999997333333233333222111 34899999999999999999999888777
Q ss_pred eEEEEEE
Q psy15734 264 GFIKVYV 270 (314)
Q Consensus 264 ~~~~l~V 270 (314)
..+.|.|
T Consensus 79 ~~~~l~V 85 (86)
T smart00409 79 STTTLTV 85 (86)
T ss_pred EEEEEEE
Confidence 7777665
No 182
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.18 E-value=7.4e-10 Score=73.33 Aligned_cols=83 Identities=22% Similarity=0.380 Sum_probs=62.2
Q ss_pred cceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCce
Q psy15734 184 LEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETD 263 (314)
Q Consensus 184 ~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 263 (314)
...+..|+++.|.|.+.+.+.+.+.|+++++..+....++....... ...|.|.++..+|+|.|.|.+.+..+...
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~ 78 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS----NSTLTISNVTPEDSGTYTCAATNSSGSAS 78 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC----eeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence 45678999999999999998899999997333333233333222111 34899999999999999999999888777
Q ss_pred eEEEEEE
Q psy15734 264 GFIKVYV 270 (314)
Q Consensus 264 ~~~~l~V 270 (314)
..+.|.|
T Consensus 79 ~~~~l~V 85 (86)
T smart00410 79 STTTLTV 85 (86)
T ss_pred EEEEEEE
Confidence 7777665
No 183
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.18 E-value=1.5e-10 Score=71.91 Aligned_cols=63 Identities=29% Similarity=0.442 Sum_probs=48.3
Q ss_pred cCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734 189 VSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG 260 (314)
Q Consensus 189 ~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g 260 (314)
+|+++.|.|.+.+.|.+.+.|++++.... .... ..... ..|.|.++..+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~---~~~~-~~~~~-----~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP---ESNR-LSASG-----STLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC---CCCE-EecCC-----cEEEEeeCCcccCEEEEEEEecCCC
Confidence 48899999999999999999999644322 1111 11222 3899999999999999999998765
No 184
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.17 E-value=1.7e-10 Score=74.76 Aligned_cols=71 Identities=18% Similarity=0.274 Sum_probs=48.3
Q ss_pred EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecCCC-c--cee
Q psy15734 39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPM-T--SQK 115 (314)
Q Consensus 39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~--~~~ 115 (314)
++|.|.+.+.|.+.+.|+|++ ..+.. ...++.+... .+.|.|.+++.+|+|.|.|.+.|..+ . +..
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g-~~l~~-------~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~ 69 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDG-TPLSD-------GQGNYSVSSK---ERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQN 69 (77)
T ss_pred CEEEEEeeecCCCcEEEEECC-EECCC-------CCccEEEeCC---CCEEEEeeCCcccCEEEEEEEEeCCCeEeeCce
Confidence 579999999999999999954 33211 1123333221 13799999999999999999987532 2 334
Q ss_pred EEEEE
Q psy15734 116 GYLQV 120 (314)
Q Consensus 116 ~~l~v 120 (314)
+.|.|
T Consensus 70 ~~l~v 74 (77)
T cd05760 70 FTLSI 74 (77)
T ss_pred EEEEE
Confidence 45554
No 185
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.16 E-value=3.2e-10 Score=73.78 Aligned_cols=70 Identities=10% Similarity=0.181 Sum_probs=51.9
Q ss_pred eecCCcceEEEcCCcEEEEEEecCCCce-EEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEE
Q psy15734 24 FAEPVANVTATVGKEALMACVVENLREY-KVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWY 102 (314)
Q Consensus 24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 102 (314)
|...|..+.+.+|+++.|.|.+.|.|.+ .+.|++++ ..+.. +. ....+.|.|.++ .|+|.|
T Consensus 1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g-~~l~~----------~~-----~~~~s~L~i~~~--~d~g~Y 62 (81)
T cd05749 1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGG-SPLGD----------PP-----APSPSVLNVPGL--NETSKF 62 (81)
T ss_pred CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECC-EECCC----------CC-----CCCCCEEEEccc--cCCeEE
Confidence 3456778999999999999999999998 79999954 33211 00 011126888887 589999
Q ss_pred EEEEecCCC
Q psy15734 103 MCQINTVPM 111 (314)
Q Consensus 103 ~C~~~~~~~ 111 (314)
.|.+.|..+
T Consensus 63 ~C~A~N~~G 71 (81)
T cd05749 63 SCEAHNAKG 71 (81)
T ss_pred EEEEEeccC
Confidence 999988633
No 186
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.16 E-value=6.6e-10 Score=73.20 Aligned_cols=80 Identities=15% Similarity=0.206 Sum_probs=51.0
Q ss_pred CCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecCC---Cc
Q psy15734 36 GKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVP---MT 112 (314)
Q Consensus 36 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~~ 112 (314)
|++++|.|.+.+.+.+.+.|++.++..... .....+..+ ........|.|.+++.+|+|.|.|.+.+.. ..
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~-----~~~~~~~~~-~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~ 74 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKG-----IPEVEEVKV-PATTLRSTLTFPHATVEDSGTYECAAHESTQDQKA 74 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCC-----ceEEEEEec-CCcEEEEEEEECCCCcCCCEEEEEEEEECccCcce
Confidence 789999999999888999999854321000 000000000 011123489999999999999999997643 34
Q ss_pred ceeEEEEEE
Q psy15734 113 SQKGYLQVV 121 (314)
Q Consensus 113 ~~~~~l~v~ 121 (314)
+..+.|.|.
T Consensus 75 ~~sv~i~V~ 83 (84)
T cd05861 75 FKKVNITVH 83 (84)
T ss_pred eEEEEEEEe
Confidence 455555553
No 187
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.16 E-value=3.1e-10 Score=73.05 Aligned_cols=70 Identities=11% Similarity=0.110 Sum_probs=47.3
Q ss_pred EEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEE--E--EeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcce
Q psy15734 40 LMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVS--I--TFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQ 114 (314)
Q Consensus 40 ~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~ 114 (314)
-|+|.+.|.|.|.++|+|++ ..+. .+.++. + .......+.|.|.++..+|+|.|+|.|.|. |....
T Consensus 2 ~i~~~v~G~P~Pti~W~kng-~~l~--------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~ 72 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEG-AILN--------ESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEK 72 (79)
T ss_pred eEEEEEeEeCCCceEEEECC-EECC--------CCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccce
Confidence 37899999999999999954 4332 122221 1 111123458999999999999999999876 44444
Q ss_pred eEEE
Q psy15734 115 KGYL 118 (314)
Q Consensus 115 ~~~l 118 (314)
.+.+
T Consensus 73 ~~~~ 76 (79)
T cd05855 73 NVSA 76 (79)
T ss_pred EEEe
Confidence 4433
No 188
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.15 E-value=4.5e-10 Score=73.72 Aligned_cols=69 Identities=17% Similarity=0.225 Sum_probs=51.5
Q ss_pred CCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEE
Q psy15734 27 PVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI 106 (314)
Q Consensus 27 ~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 106 (314)
.|....+..|+++.|.|.+.+ +.+.+.|+++ +..+.. ...++.+.. +.|.|.+++.+|+|.|+|.+
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~n-g~~i~~-------~~~r~~~~~-----~~L~I~nv~~~DsG~Y~C~a 67 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFD-GKVLTP-------ESAKYLLYR-----DGLLIFNASEADAGRYQCLS 67 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CCCeEEEEEC-CEECCC-------CCceEEEEC-----CcEEEeCCCHHHCEEEEEEE
Confidence 466788999999999999865 5679999995 443321 113443322 26999999999999999999
Q ss_pred ecC
Q psy15734 107 NTV 109 (314)
Q Consensus 107 ~~~ 109 (314)
.+.
T Consensus 68 ~e~ 70 (87)
T cd05873 68 VEK 70 (87)
T ss_pred Eec
Confidence 654
No 189
>KOG3515|consensus
Probab=99.15 E-value=2.4e-10 Score=101.52 Aligned_cols=255 Identities=17% Similarity=0.176 Sum_probs=148.3
Q ss_pred ceEEEcCCcEEEEEEecCC-CceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEec
Q psy15734 30 NVTATVGKEALMACVVENL-REYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINT 108 (314)
Q Consensus 30 ~~~v~~g~~~~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 108 (314)
...+..|++|.|+|.+.+. |...+.|++.+...- .+.....+ ..|......+...+.|.|.+.+
T Consensus 16 ~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~-----------~~~~~~~~----~~~~~~~~~~~~~~~~~c~a~n 80 (741)
T KOG3515|consen 16 TVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH-----------GRYATIAD----PTLVTTGDVRDTVAELNCRAFN 80 (741)
T ss_pred ChhhccCCcceeeeecCCCCCCcceEEEecCcccc-----------cccccccC----Cceeeecchhhhhhhhhhhhcc
Confidence 3489999999999999775 558999999653311 22211111 1577777777777899999966
Q ss_pred CC--CcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEec--ccCCCceEEEcCCCceeecC------------Ce
Q psy15734 109 VP--MTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAV--GYPEPYVAWRREDGKAINYN------------GE 172 (314)
Q Consensus 109 ~~--~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~--~~p~p~~~W~~~~~~~~~~~------------~~ 172 (314)
.. .......+.+..+|.-.... .......+..+.+.|.+. +.|.+++.|........... +.
T Consensus 81 s~~~~~~~~~~l~v~~~pa~~~~~--~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss 158 (741)
T KOG3515|consen 81 SVGMPSRCPMILDVDYPPACLPEL--GEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSS 158 (741)
T ss_pred cccCceecceeeccccCccccccc--cchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCce
Confidence 42 22233456666666543322 233455678899999654 45788999997422221111 00
Q ss_pred -eC--------------------------------------------CCeEEcCCCcceeecCccEEEEEEEe-ecCCce
Q psy15734 173 -LV--------------------------------------------PPMLTIPNQLEGAFVSQTVELHCHTE-AFPASL 206 (314)
Q Consensus 173 -~~--------------------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~-g~p~p~ 206 (314)
.. ...+..........+|+.+.|.|.+. |.|.+.
T Consensus 159 ~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~ 238 (741)
T KOG3515|consen 159 YTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQ 238 (741)
T ss_pred eccccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchh
Confidence 00 11111222335678899999999775 588899
Q ss_pred eEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCeeEEEE---c
Q psy15734 207 NYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRK---M 283 (314)
Q Consensus 207 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~---~ 283 (314)
+.|+++.......+. .....++....+.+.+..-...+.-...|.+.| -..+...+.|..++-.....++ .
T Consensus 239 ~~w~~~s~~~~~~sl---~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n---~~~~~~~tav~~~~~~~~Ist~~~~l 312 (741)
T KOG3515|consen 239 QTWYKDSRPQSESSL---LSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN---LLAASQITAVQVKPTAVPISTSDSGL 312 (741)
T ss_pred hhhccccccchhhhc---ccCCCCCCcccccccccccccchhhhhhccccC---ccccceeeecccccccccccCccccc
Confidence 999997544333210 111123333334555544444445578899998 2233444444444332222222 3
Q ss_pred cccccEeEEEEEee-ccCCCccceE
Q psy15734 284 SRLHMGAYLCIASN-GVVPSVSHRI 307 (314)
Q Consensus 284 ~~~~~g~~~C~a~~-~~~~~~~w~v 307 (314)
..++.+...|...+ .++..+.|..
T Consensus 313 s~g~s~r~~c~~sss~p~~~i~w~~ 337 (741)
T KOG3515|consen 313 SSGRSARSSCVSSSSKPPAHIAWYK 337 (741)
T ss_pred ccccccccceeccCCCCccceeeec
Confidence 34455668888766 5566888865
No 190
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.14 E-value=3.6e-10 Score=73.70 Aligned_cols=66 Identities=20% Similarity=0.403 Sum_probs=46.1
Q ss_pred EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734 39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV 109 (314)
Q Consensus 39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 109 (314)
++|.|.+.|.|.+.+.|++.++..... .......++++.+..+ ++|.|.+++.+|+|.|.|.+.|.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~-~~~~~~~~~r~~~~~~----~~L~I~~v~~~D~G~Y~C~a~N~ 66 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQ-HTHTCCLAGRIQLLSN----GSLLIKHVLEEDSGYYLCKVSND 66 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccc-cccccccCCCEEEecC----CeEEECcCCcccCEEEEEEEEeC
Confidence 579999999999999999964431110 0000113345544332 37999999999999999999876
No 191
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.14 E-value=2.9e-10 Score=75.98 Aligned_cols=79 Identities=20% Similarity=0.358 Sum_probs=53.4
Q ss_pred eEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeee-----eeecCcCEEEEeC--CceeEEEEEeeecCCCCeEEE
Q psy15734 31 VTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHK-----VVTQNKRVSITFN--DHRSWFLHLRDVQETDRGWYM 103 (314)
Q Consensus 31 ~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~ 103 (314)
+.+.+|++|+|+|.+++.+.+.+.|++.+...+...... ......|+..... +...+.|.|.+++.+|+|.|+
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 568899999999999888889999997542321111000 0112334444331 223567999999999999999
Q ss_pred EEEecC
Q psy15734 104 CQINTV 109 (314)
Q Consensus 104 C~~~~~ 109 (314)
|.+.+.
T Consensus 82 C~v~~~ 87 (94)
T cd07690 82 CEVEDK 87 (94)
T ss_pred EEECCc
Confidence 999653
No 192
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.14 E-value=4.4e-10 Score=73.26 Aligned_cols=70 Identities=10% Similarity=0.106 Sum_probs=46.8
Q ss_pred EEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEE--EEe----CCceeEEEEEeeecCCCCeEEEEEEecC-CCc
Q psy15734 40 LMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVS--ITF----NDHRSWFLHLRDVQETDRGWYMCQINTV-PMT 112 (314)
Q Consensus 40 ~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~ 112 (314)
-|+|.+.|.|.|.++|+|++ ..+.. +.++. ... .....+.|.|.+++.+|+|.|+|.+.|. |..
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g-~~i~~--------~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~ 72 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNG-AVLNE--------SDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQD 72 (81)
T ss_pred eEEEEeEeeCCCcEEEEECC-EECcC--------CCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCe
Confidence 37899999999999999944 43321 11211 111 1122447999999999999999999876 444
Q ss_pred ceeEEE
Q psy15734 113 SQKGYL 118 (314)
Q Consensus 113 ~~~~~l 118 (314)
+..+.+
T Consensus 73 ~~~~~~ 78 (81)
T cd04971 73 SKSISA 78 (81)
T ss_pred eeEEEe
Confidence 444433
No 193
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.13 E-value=7.9e-10 Score=74.23 Aligned_cols=77 Identities=17% Similarity=0.224 Sum_probs=55.2
Q ss_pred CCceecCCcceEEEcC---CcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeec-C
Q psy15734 21 MPRFAEPVANVTATVG---KEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQ-E 96 (314)
Q Consensus 21 ~p~~~~~~~~~~v~~g---~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~ 96 (314)
.|.|+.++..+.+.++ +++.|.|.+.+.|.+.+.|++++ ..+.. ....++.... +.|.|.++. .
T Consensus 1 ~P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~-~~l~~------~~~~~~~~~~-----~~L~i~~~~~~ 68 (91)
T cd04967 1 GPVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNG-TEIDD------EPDSRYSLVG-----GNLVISNPSKA 68 (91)
T ss_pred CCeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECC-EECCC------CCCCCEEEEC-----CEEEEecCCcc
Confidence 3788888887766554 57999999999899999999944 43211 1122333321 279999887 4
Q ss_pred CCCeEEEEEEecC
Q psy15734 97 TDRGWYMCQINTV 109 (314)
Q Consensus 97 ~d~G~Y~C~~~~~ 109 (314)
+|+|.|+|.+.|.
T Consensus 69 ~d~G~Y~C~a~N~ 81 (91)
T cd04967 69 KDAGRYQCLASNI 81 (91)
T ss_pred CCCEEEEEEEEcC
Confidence 9999999999875
No 194
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.13 E-value=1.1e-09 Score=72.63 Aligned_cols=81 Identities=16% Similarity=0.280 Sum_probs=54.4
Q ss_pred ceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734 30 NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV 109 (314)
Q Consensus 30 ~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 109 (314)
.+.+..|+.+.|.|.+.+.+.+.+.|++++ ..+.. +..............|.|.+++.+|+|.|.|.+.+.
T Consensus 3 ~~~~~~G~~~~l~C~~~~~p~~~v~W~k~~-~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 73 (85)
T cd05729 3 LHAVPAGSTVRLKCPASGNPRPTITWLKDG-KPFKK--------EHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENK 73 (85)
T ss_pred eeEecCCCcEEEEEEcCCCCCCeEEEEECC-EECcc--------cCceeEEEccCcEEEEEEeECCcccCEEEEEEEEEC
Confidence 356778999999999998888999999954 32211 111111111122347999999999999999999765
Q ss_pred -CCcceeEEEE
Q psy15734 110 -PMTSQKGYLQ 119 (314)
Q Consensus 110 -~~~~~~~~l~ 119 (314)
+.....+.|.
T Consensus 74 ~g~~~~~~~l~ 84 (85)
T cd05729 74 YGSINHTYKVD 84 (85)
T ss_pred CceEEEEEEEe
Confidence 3334444443
No 195
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.12 E-value=3.2e-10 Score=72.41 Aligned_cols=69 Identities=22% Similarity=0.396 Sum_probs=47.5
Q ss_pred EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcceeEE
Q psy15734 39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQKGY 117 (314)
Q Consensus 39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~ 117 (314)
+.|.|.+.+.|.+.+.|++++.. +. ..+..... ....|.|.+++.+|+|.|+|.+.|. +..+..+.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~-~~---------~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 67 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGE-LP---------ADRTKFEN---FNKTLKIDNVSEEDDGEYRCTASNSLGSARHTIS 67 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeE-CC---------CCceeEec---CCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEE
Confidence 47999999999999999996532 21 11211111 1127999999999999999999775 44444444
Q ss_pred EEE
Q psy15734 118 LQV 120 (314)
Q Consensus 118 l~v 120 (314)
|.|
T Consensus 68 l~V 70 (71)
T cd05731 68 VTV 70 (71)
T ss_pred EEE
Confidence 444
No 196
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.11 E-value=6.6e-10 Score=73.87 Aligned_cols=77 Identities=22% Similarity=0.413 Sum_probs=58.8
Q ss_pred CceecC-CcceEEEcCCcEEEEEE-ecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734 22 PRFAEP-VANVTATVGKEALMACV-VENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR 99 (314)
Q Consensus 22 p~~~~~-~~~~~v~~g~~~~l~C~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 99 (314)
|.|... .+.+.|.+|+.+.|.|. ..+.|.+.+.|++++... +..+.|+.+..+ |.|.|.+++.+|+
T Consensus 3 ~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~--------i~~~~Ri~~~~~----GnL~fs~v~~~D~ 70 (95)
T cd05845 3 PKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLH--------ITQDERVSMGQN----GNLYFANVEEQDS 70 (95)
T ss_pred CcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCcc--------ccccccEEECCC----ceEEEEEEehhhC
Confidence 444444 57899999999999998 588899999999744321 234567666543 4899999999999
Q ss_pred e-EEEEEEecCC
Q psy15734 100 G-WYMCQINTVP 110 (314)
Q Consensus 100 G-~Y~C~~~~~~ 110 (314)
| .|.|.+.+..
T Consensus 71 g~~Y~C~a~~~~ 82 (95)
T cd05845 71 HPDYICHAHFPG 82 (95)
T ss_pred CCCeEEEEEccc
Confidence 9 7999997643
No 197
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.11 E-value=8.1e-10 Score=71.49 Aligned_cols=73 Identities=23% Similarity=0.348 Sum_probs=50.6
Q ss_pred EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcceeEE
Q psy15734 39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQKGY 117 (314)
Q Consensus 39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~ 117 (314)
+.|.|.+.+.|.+.+.|++++ ..+.. ....++....++ ..|.|.+++.+|.|.|+|.+.|. +.....+.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~-~~l~~------~~~~~~~~~~~~---~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 70 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNG-MDITP------KLSKQLTLIANG---SELHISNVRYEDTGAYTCIAKNEAGVDEDISS 70 (76)
T ss_pred CEeEeEeeecCCCEEEEEECC-EECCC------CCCccEEEeCCC---CEEEECcCCcccCEEEEEEEEcCCCCcceEEE
Confidence 468999999999999999954 33211 112233332221 26999999999999999999775 55566666
Q ss_pred EEEE
Q psy15734 118 LQVV 121 (314)
Q Consensus 118 l~v~ 121 (314)
|.|.
T Consensus 71 l~V~ 74 (76)
T cd05736 71 LFVE 74 (76)
T ss_pred EEEE
Confidence 6654
No 198
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.09 E-value=5e-10 Score=70.82 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=42.4
Q ss_pred EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734 39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV 109 (314)
Q Consensus 39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 109 (314)
+.|.|.+.|.|.|.+.|+|++ ..+.. ...++.. ++ ++|.|.+++.+|+|.|+|.+.+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg-~~l~~-------~~~~~~~--~~---~~L~I~~v~~~D~G~YtC~a~~~ 58 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDG-LPAAE-------KCSRYHV--DG---YSLVIKDVTEEDAGIYTILLGIK 58 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECC-EECCC-------CCcEEEe--CC---CEEEECcCCHHHCEEEEEEEEcc
Confidence 478999999999999999954 33211 1122221 11 27999999999999999999764
No 199
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.07 E-value=3.5e-09 Score=70.71 Aligned_cols=74 Identities=9% Similarity=0.169 Sum_probs=54.3
Q ss_pred CCcceeecCccEEEEEEEeecCCceeEEecCCCeee-------ecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734 182 NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMI-------ITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV 254 (314)
Q Consensus 182 ~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~-------~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~ 254 (314)
.+++.+.+|+++.|+|.+++.....+.|++.+...+ ....++......+ ...+|+|.+++.+|+|.|.|.
T Consensus 4 ~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~---~~~tL~I~~vq~~D~G~Y~Cq 80 (95)
T cd05881 4 TEDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSS---NELRVSLSNVSLSDEGRYFCQ 80 (95)
T ss_pred cCceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCC---CEEEEEECcCCcccCEEEEEE
Confidence 355778999999999999998777788887653332 2344554442222 234799999999999999999
Q ss_pred EeeC
Q psy15734 255 AVNA 258 (314)
Q Consensus 255 a~n~ 258 (314)
+...
T Consensus 81 v~t~ 84 (95)
T cd05881 81 LYTD 84 (95)
T ss_pred EEcc
Confidence 9763
No 200
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.07 E-value=8.4e-10 Score=73.51 Aligned_cols=72 Identities=17% Similarity=0.302 Sum_probs=53.1
Q ss_pred CcceEEEcCCcEEEEEEe-cCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEE
Q psy15734 28 VANVTATVGKEALMACVV-ENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI 106 (314)
Q Consensus 28 ~~~~~v~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 106 (314)
...+.+.+|+.+.|.|.. .+.|.+.+.|++++.... ...+.|..+.. ..|.|.|.+++++|+|.|+|.+
T Consensus 10 ~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~-------~~~d~r~~~~~---~~G~L~fs~v~~~D~g~Y~C~A 79 (96)
T cd05727 10 RDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNF-------IPEDGRRFVSQ---TNGNLYIAKVEASDRGNYSCFV 79 (96)
T ss_pred cCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccc-------cccCCCeEEeC---CCCcEEEeecCHhhCceeEEEE
Confidence 456789999999999987 567889999999643211 11233433332 2348999999999999999999
Q ss_pred ecC
Q psy15734 107 NTV 109 (314)
Q Consensus 107 ~~~ 109 (314)
.+.
T Consensus 80 ~n~ 82 (96)
T cd05727 80 SSP 82 (96)
T ss_pred Eec
Confidence 764
No 201
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.07 E-value=3e-09 Score=71.01 Aligned_cols=84 Identities=23% Similarity=0.278 Sum_probs=54.1
Q ss_pred cceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEec
Q psy15734 29 ANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINT 108 (314)
Q Consensus 29 ~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 108 (314)
..+.+.+|+++.|.|... .|.+.+.||+.+...... .....+.++.... +.|.|.+++++|+|.|+|.+.+
T Consensus 4 ~~~~~~eG~~v~L~C~~~-~p~p~v~Wykq~~g~~~~---~~~~~~~r~~~~~-----~~L~I~~~~~~DsG~Y~C~a~~ 74 (91)
T cd05871 4 KVVYGVENNSTFLECLPK-SPQASVKWLFQRGGDQRK---EEVKTEERLIHTE-----RGLLLRSLQRSDAGVYTCTAVE 74 (91)
T ss_pred eEEEEecCCcEEEEEECC-CCCceEEEEEECCCCCcc---ccccccccEEEec-----CeEEEeeCChhHCEEEEEEEEc
Confidence 356788999999999974 688899999854211100 0011233444322 2699999999999999999964
Q ss_pred CCC--cceeEEEEEE
Q psy15734 109 VPM--TSQKGYLQVV 121 (314)
Q Consensus 109 ~~~--~~~~~~l~v~ 121 (314)
.+. ....+.|.|.
T Consensus 75 ~~~~~~~~~~~l~v~ 89 (91)
T cd05871 75 HSFSQTLAKYTLHVI 89 (91)
T ss_pred cCCeEEEEEEEEEEe
Confidence 332 2234445543
No 202
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.06 E-value=1.1e-09 Score=70.35 Aligned_cols=67 Identities=16% Similarity=0.146 Sum_probs=49.0
Q ss_pred EEEEEEEe-ecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734 193 VELHCHTE-AFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET 262 (314)
Q Consensus 193 ~~l~C~~~-g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~ 262 (314)
+.|+|.+. |.|++.+.||+++..+. ... . .......+...++|.+.....+|.+.|+|+|.|+.+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~-~~~-~-~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELK-GVI-S-QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECC-CCc-c-cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 68999885 68999999999754432 211 1 11112225667799999999999999999999988754
No 203
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.06 E-value=1.3e-09 Score=72.18 Aligned_cols=69 Identities=20% Similarity=0.369 Sum_probs=52.3
Q ss_pred ecCCcceEEEcCCcEEEEEEecC-CCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEE
Q psy15734 25 AEPVANVTATVGKEALMACVVEN-LREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYM 103 (314)
Q Consensus 25 ~~~~~~~~v~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 103 (314)
+.+|+.+.+.+|++++|.|.+.+ .+.+.+.|++.+.. +. . +. .. ..+.|.|.+++.+|+|.|+
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~-~~--------~--~~--~~---~~~~L~I~~v~~~DsG~Y~ 68 (85)
T cd05754 5 VEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGG-LP--------S--RA--MD---FNGILTIRNVQLSDAGTYV 68 (85)
T ss_pred ecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCc-CC--------C--cc--cc---cCCEEEECCCCHHHCEEEE
Confidence 45677889999999999999964 67789999996532 11 0 10 00 1237999999999999999
Q ss_pred EEEecC
Q psy15734 104 CQINTV 109 (314)
Q Consensus 104 C~~~~~ 109 (314)
|.+.|.
T Consensus 69 C~a~n~ 74 (85)
T cd05754 69 CTGSNM 74 (85)
T ss_pred EEEecc
Confidence 999764
No 204
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.06 E-value=1.6e-09 Score=71.14 Aligned_cols=75 Identities=21% Similarity=0.313 Sum_probs=51.8
Q ss_pred EEEEEEEee-cCCceeEEecCCCeeeecCCceeeeEeeC-C-eeeEEEEEEeecCCCCCeEEEEEEeeCCCCc--eeEEE
Q psy15734 193 VELHCHTEA-FPASLNYWTNEKGDMIITGDDYEDSRLIN-G-YSCHMTLKIRSILSHQFGSYRCVAVNALGET--DGFIK 267 (314)
Q Consensus 193 ~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~~~~~~~~~-~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~ 267 (314)
+.|.|.+.| .|.+.+.|+++ +..+. ..........+ + +...+.|.|.....+|.|.|+|.|.|..... ..++.
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~-g~~l~-~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~ 79 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRD-GEVLD-GATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVT 79 (82)
T ss_pred EEEEEEEeCccCCCEEEEEEC-CEEcc-CceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEE
Confidence 689999987 68899999996 44333 22222222222 2 5566789999888889999999999977544 44544
Q ss_pred EE
Q psy15734 268 VY 269 (314)
Q Consensus 268 l~ 269 (314)
|.
T Consensus 80 l~ 81 (82)
T cd05759 80 LD 81 (82)
T ss_pred Ec
Confidence 43
No 205
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=99.05 E-value=8e-10 Score=71.30 Aligned_cols=74 Identities=24% Similarity=0.375 Sum_probs=50.7
Q ss_pred CCeEEcCCCcceeecCccEEEEEEEeecC-CceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEE
Q psy15734 175 PPMLTIPNQLEGAFVSQTVELHCHTEAFP-ASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC 253 (314)
Q Consensus 175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p-~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C 253 (314)
+|.|...+.......+. +.|.|.+.+.| .+.+.|+.. ..... ..........+.|.|.++..+|.|.|+|
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~~-~~~~~-------~~~~~~~~~~~~L~i~~v~~~~~g~y~C 71 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYDS-NPSFN-------SNSRGSSSSNSTLTISNVTRSDNGTYTC 71 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEETE-EEEEE-------EEEEEEEEEEEEEEESSCCGGGTEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEEec-CCcee-------eeeeeccceeeEEEEccCCHHhCcEEEE
Confidence 36666666555454455 99999999988 889999911 11111 1111122345699999999999999999
Q ss_pred EEee
Q psy15734 254 VAVN 257 (314)
Q Consensus 254 ~a~n 257 (314)
.|.|
T Consensus 72 ~a~N 75 (75)
T PF13927_consen 72 IASN 75 (75)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9987
No 206
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.05 E-value=3.5e-09 Score=73.84 Aligned_cols=84 Identities=18% Similarity=0.361 Sum_probs=59.5
Q ss_pred cCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCce-e---EEEeeee-eeecCcCEEEEeC-CceeEEEEEeeecCCCC
Q psy15734 26 EPVANVTATVGKEALMACVVENLREYKVAWVKMITQ-T---ILSIHHK-VVTQNKRVSITFN-DHRSWFLHLRDVQETDR 99 (314)
Q Consensus 26 ~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~-~---~~~~~~~-~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~ 99 (314)
.++..+.+.+|++++|.|.+.+.+...+.||+.... . +...... .....+|+.+... ....+.|.|.+++.+|+
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds 82 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDS 82 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHC
Confidence 457788999999999999998767789999986421 1 1111000 0123457766543 23567899999999999
Q ss_pred eEEEEEEecC
Q psy15734 100 GWYMCQINTV 109 (314)
Q Consensus 100 G~Y~C~~~~~ 109 (314)
|.|.|.+.+.
T Consensus 83 G~Y~C~~~~~ 92 (109)
T cd04983 83 AVYFCALSES 92 (109)
T ss_pred EEEEEEEecC
Confidence 9999998653
No 207
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.04 E-value=1.6e-09 Score=69.94 Aligned_cols=63 Identities=16% Similarity=0.376 Sum_probs=43.6
Q ss_pred EEEEEEecC-CCceEEEEEEcCceeEEEeeeeeeecCcC-EEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734 39 ALMACVVEN-LREYKVAWVKMITQTILSIHHKVVTQNKR-VSITFNDHRSWFLHLRDVQETDRGWYMCQINTV 109 (314)
Q Consensus 39 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 109 (314)
+.|.|.+.+ .|.+.+.|++++ ..+... .... +.+.. ......|.|.+++.+|+|.|+|.+.|.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g-~~l~~~------~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 65 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDG-KELNRK------NKPRNIKIRN-KKKNSELQINKAKLADSGEYTCVVENI 65 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCC-eecccc------CCcceEEEEe-cCceEEEEEccCCcccCeEEEEEEEEc
Confidence 479999999 899999999954 433211 0111 11221 122347999999999999999999875
No 208
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.02 E-value=7.8e-10 Score=68.98 Aligned_cols=63 Identities=22% Similarity=0.427 Sum_probs=44.0
Q ss_pred CccEEEEEEE-eecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734 190 SQTVELHCHT-EAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA 255 (314)
Q Consensus 190 g~~~~l~C~~-~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a 255 (314)
|+++.|.|.+ .+.+.+.+.|++++......... .....+......|.|.++..+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTT---NRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEE---EEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCccee---EeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 77888899999986543322111 111121111224999999999999999986
No 209
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.02 E-value=1.4e-09 Score=71.45 Aligned_cols=62 Identities=18% Similarity=0.174 Sum_probs=46.4
Q ss_pred ceEEEcCCcEEEEEEecC-CCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEec
Q psy15734 30 NVTATVGKEALMACVVEN-LREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINT 108 (314)
Q Consensus 30 ~~~v~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 108 (314)
...+.+|++++|.|.+.. .+...+.|++++. .+.. . .....|.|.+++.+|+|.|+|.+.+
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~-~~~~--------~---------~~~~~l~I~~~~~~dsG~Y~C~~~~ 69 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGK-AKKY--------S---------HSNSNLSIPQATLSDSGSYHCSGII 69 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceEEEEEECCe-Eccc--------c---------CCCceEEECccCHHHCEEEEEEEEe
Confidence 446999999999999854 4567899999553 2210 0 0112799999999999999999976
Q ss_pred C
Q psy15734 109 V 109 (314)
Q Consensus 109 ~ 109 (314)
.
T Consensus 70 ~ 70 (83)
T cd05753 70 G 70 (83)
T ss_pred C
Confidence 4
No 210
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.02 E-value=3.4e-09 Score=73.89 Aligned_cols=82 Identities=11% Similarity=0.200 Sum_probs=57.7
Q ss_pred cCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc-ee---EEEeeeee-----eecCcCEEEEeCCceeEEEEEeeecC
Q psy15734 26 EPVANVTATVGKEALMACVVENLREYKVAWVKMIT-QT---ILSIHHKV-----VTQNKRVSITFNDHRSWFLHLRDVQE 96 (314)
Q Consensus 26 ~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~-~~---~~~~~~~~-----~~~~~~~~~~~~~~~~~~L~i~~~~~ 96 (314)
..|..+.+.+|++++|.|.+.+ +...+.|||... .. +....... .....|+.........+.|.|.+++.
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~ 81 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP 81 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence 4577889999999999999987 667899999642 11 11111000 11235666554433556899999999
Q ss_pred CCCeEEEEEEec
Q psy15734 97 TDRGWYMCQINT 108 (314)
Q Consensus 97 ~d~G~Y~C~~~~ 108 (314)
+|+|.|.|.+..
T Consensus 82 ~Dsg~Y~Ca~~~ 93 (110)
T cd05899 82 EDSAVYLCASSL 93 (110)
T ss_pred hhCEEEEEEeeC
Confidence 999999999854
No 211
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.02 E-value=4.5e-09 Score=67.91 Aligned_cols=64 Identities=19% Similarity=0.182 Sum_probs=43.9
Q ss_pred EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecC----CCCeEEEEEEecCCCc
Q psy15734 39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQE----TDRGWYMCQINTVPMT 112 (314)
Q Consensus 39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~~~~~~~~ 112 (314)
+.|.|.+.|.|.+.+.|+|++ ..+. ...+.++.+... .++|.|.++.. .|+|.|+|.+.|..+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g-~~~~------~~~~~~~~~~~~---~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~ 68 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNG-KFFN------VAKDPRVSMRRR---SGTLVIDFSGGGRPEDYEGEYQCFARNNLGT 68 (77)
T ss_pred CEEEEeccccCCCEEEEEECC-EEcc------CcCCCcEEEeCC---CceEEEeccCCCCCCCCCEEEEEEEEeccce
Confidence 479999999999999999954 3221 122444444322 23799987642 4699999999886443
No 212
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.01 E-value=3.1e-09 Score=68.83 Aligned_cols=63 Identities=14% Similarity=0.228 Sum_probs=43.5
Q ss_pred EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecC----CCCeEEEEEEecCCC
Q psy15734 39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQE----TDRGWYMCQINTVPM 111 (314)
Q Consensus 39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~~~~~~~ 111 (314)
+.|.|.+.|.|.+.+.|+|++ ..+.. ..+.++.+... .+.|.|.+++. +|+|.|.|.+.|..+
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g-~~l~~------~~~~~~~~~~~---~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G 67 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNG-THFDP------EKDPRVTMKPD---SGTLVIDNMNGGRAEDYEGEYQCYASNELG 67 (77)
T ss_pred CEEEeeCcccCCCeEEEEECC-eECCC------CCCCCEEEeCC---CCEEEEeccCCCCCcCCCEEEEEEEEcCCC
Confidence 479999999999999999954 33211 11234433221 23788988754 789999999988643
No 213
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.99 E-value=2e-09 Score=71.84 Aligned_cols=72 Identities=15% Similarity=0.116 Sum_probs=50.5
Q ss_pred eeecCccEEEEEEE-ee----cCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734 186 GAFVSQTVELHCHT-EA----FPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG 260 (314)
Q Consensus 186 ~v~~g~~~~l~C~~-~g----~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g 260 (314)
.+..|.+..|.|.- .+ .+.|.+.|+|++ ..+............+. .|.|.++..+|+|.|+|+|.+..|
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~-~~l~~~~~~~~~~~~~~-----~L~I~~v~~~D~G~YtC~~~~~~~ 79 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDS-VLLDKDNEKFYSLKGST-----YLHIIDVSLNDSGYYTCKLQFTHE 79 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCC-EECcCCCcceEecCCCC-----EEEEEEcChhhCEEEEEEEEEeeC
Confidence 46788999999973 33 467899999974 43332221111111222 799999999999999999999876
Q ss_pred Cce
Q psy15734 261 ETD 263 (314)
Q Consensus 261 ~~~ 263 (314)
...
T Consensus 80 g~~ 82 (95)
T cd05897 80 GKK 82 (95)
T ss_pred CEE
Confidence 553
No 214
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.99 E-value=1.5e-08 Score=68.04 Aligned_cols=90 Identities=14% Similarity=0.196 Sum_probs=60.9
Q ss_pred CceecCCcceEEEcCCcEEEEEEecCCCc-eEEEEEEcCceeEEEeeeeeeecCcCEEEEeCC---ceeEEEEEeeecCC
Q psy15734 22 PRFAEPVANVTATVGKEALMACVVENLRE-YKVAWVKMITQTILSIHHKVVTQNKRVSITFND---HRSWFLHLRDVQET 97 (314)
Q Consensus 22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~L~i~~~~~~ 97 (314)
|.++.......+.+|+++.|.|.+.+.|. ..+.|...+. .+. ...+.++.+.... .....|.|.++..+
T Consensus 2 pP~i~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~-~i~------~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~ 74 (98)
T cd05898 2 PPIISSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKEN-VLE------SGTSERYTVERTSTGSGVLSTLTINNIMEA 74 (98)
T ss_pred CCEEecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccc-ccc------CCCCCCEEEEEEccCCCcEEEEEECCCccc
Confidence 44457777888999999999999966555 5778887432 221 1123466665432 22348999999887
Q ss_pred C-CeEEEEEEecC-CCcceeEEE
Q psy15734 98 D-RGWYMCQINTV-PMTSQKGYL 118 (314)
Q Consensus 98 d-~G~Y~C~~~~~-~~~~~~~~l 118 (314)
| .|.|.|.+.|. |.....+.|
T Consensus 75 d~~g~Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 75 DFQTHYNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred cCCcEEEEEEEeCCccceEEEEe
Confidence 7 89999999775 444444443
No 215
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.98 E-value=3.7e-09 Score=65.86 Aligned_cols=62 Identities=23% Similarity=0.312 Sum_probs=42.9
Q ss_pred CCcEEEEEEe-cCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeE-EEEEeeecCCCCeEEEEEE
Q psy15734 36 GKEALMACVV-ENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSW-FLHLRDVQETDRGWYMCQI 106 (314)
Q Consensus 36 g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~i~~~~~~d~G~Y~C~~ 106 (314)
|++++|.|.+ .+.+...+.|++++.......... ......... .|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~---------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTN---------RSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEE---------EEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeE---------eecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 667888999999765432221111 111111111 3999999999999999986
No 216
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.97 E-value=7.8e-09 Score=66.80 Aligned_cols=64 Identities=13% Similarity=0.239 Sum_probs=42.7
Q ss_pred EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecC----CCCeEEEEEEecCCCc
Q psy15734 39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQE----TDRGWYMCQINTVPMT 112 (314)
Q Consensus 39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~~~~~~~~ 112 (314)
+.|.|.+.|.|.+.+.|++++ ..+. ...+.++.+... .++|.|..+.. .|.|.|+|.+.|..+.
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g-~~l~------~~~~~~~~~~~~---~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~ 68 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNG-THFD------IDKDPKVTMKPN---TGTLVINIMNGEKAEAYEGVYQCTARNERGA 68 (77)
T ss_pred CEEEeeCcccCCCeEEEEECC-eECC------CcCCCCEEEeCC---CceEEEeccccCCCCCCCEEEEEEEEcCCCe
Confidence 479999999999999999954 3321 112233333221 23688877764 3789999999886443
No 217
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.97 E-value=1.1e-08 Score=70.03 Aligned_cols=85 Identities=18% Similarity=0.320 Sum_probs=51.7
Q ss_pred CCcEEEEEEecC---CCceEEEEEEcCceeEEEeeee--ee------ecCcCEEEEeC--CceeEEEEEeeecCCCCeEE
Q psy15734 36 GKEALMACVVEN---LREYKVAWVKMITQTILSIHHK--VV------TQNKRVSITFN--DHRSWFLHLRDVQETDRGWY 102 (314)
Q Consensus 36 g~~~~l~C~~~~---~~~~~v~W~~~~~~~~~~~~~~--~~------~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y 102 (314)
|++++|+|.... .....+.|++.....+...... .. .-.+|+.+..+ .....+|+|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 789999999853 2336899999654332221111 00 01235555432 12346899999999999999
Q ss_pred EEEEecCC-CcceeEEEEE
Q psy15734 103 MCQINTVP-MTSQKGYLQV 120 (314)
Q Consensus 103 ~C~~~~~~-~~~~~~~l~v 120 (314)
+|.+.+.+ ..+..+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 99997543 3333334443
No 218
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.97 E-value=4.1e-09 Score=68.12 Aligned_cols=65 Identities=17% Similarity=0.350 Sum_probs=43.2
Q ss_pred EEEEEEecC-CCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734 39 ALMACVVEN-LREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV 109 (314)
Q Consensus 39 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 109 (314)
+.|.|.+.+ .|.+.+.|++++ ..+.... ....++.+... ...+.|.|.+++.+|+|.|+|.+.|.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g-~~i~~~~----~~~~~~~~~~~-~~~~~L~I~~~~~~DsG~Y~C~a~N~ 66 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNG-KEIGAKN----KPDNKIKIRKK-KKSSELQISKASLADNGEYKCMVSSK 66 (76)
T ss_pred CEEEEecccCCCCCceEEEECC-cccccCC----CCCceEEEEeC-CcEEEEEECcCCcccCEEEEEEEEeC
Confidence 479999864 577899999954 4332100 11222333222 22347999999999999999999775
No 219
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.95 E-value=6e-09 Score=69.71 Aligned_cols=80 Identities=16% Similarity=0.130 Sum_probs=56.9
Q ss_pred ceeecCccEEEEEEEe-----------ecCCceeEEecCCCeeeecCC----ceeeeEeeCCeeeEEEEEEeecCCCCCe
Q psy15734 185 EGAFVSQTVELHCHTE-----------AFPASLNYWTNEKGDMIITGD----DYEDSRLINGYSCHMTLKIRSILSHQFG 249 (314)
Q Consensus 185 ~~v~~g~~~~l~C~~~-----------g~p~p~~~W~~~~~~~~~~~~----~~~~~~~~~~~~~~s~L~i~~~~~~d~G 249 (314)
..+.+|+.+.|.|... ..+...+.|+|++.......+ ..++. ..+. .|.|.++..+|+|
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~-~~~~-----~Lwf~Pa~~eDSG 83 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMS-KEED-----SIWFRPAELQDSG 83 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEE-EeCC-----EEEEEeCChhhCe
Confidence 4678999999999862 122347899998533222221 11222 2333 9999999999999
Q ss_pred EEEEEEeeCCCCceeEEEEEE
Q psy15734 250 SYRCVAVNALGETDGFIKVYV 270 (314)
Q Consensus 250 ~Y~C~a~n~~g~~~~~~~l~V 270 (314)
.|+|.+.|........+.|+|
T Consensus 84 ~Y~C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 84 LYTCVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred EEEEEECCCCcceEEEEEEEC
Confidence 999999999888787777764
No 220
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.94 E-value=1.1e-08 Score=70.90 Aligned_cols=84 Identities=18% Similarity=0.326 Sum_probs=57.3
Q ss_pred cCccEEEEEEEeecC------CceeEEecCC--C--e--eee-cCCc------eeeeEe-eCCeeeEEEEEEeecCCCCC
Q psy15734 189 VSQTVELHCHTEAFP------ASLNYWTNEK--G--D--MII-TGDD------YEDSRL-INGYSCHMTLKIRSILSHQF 248 (314)
Q Consensus 189 ~g~~~~l~C~~~g~p------~p~~~W~~~~--~--~--~~~-~~~~------~~~~~~-~~~~~~~s~L~i~~~~~~d~ 248 (314)
.|++++|.|.....+ .+.+.|++.. . . .+. .... +..... ........+|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999998764 4688999862 1 1 111 1111 111111 01112356999999999999
Q ss_pred eEEEEEEeeCCCCceeEEEEEEEe
Q psy15734 249 GSYRCVAVNALGETDGFIKVYVNL 272 (314)
Q Consensus 249 G~Y~C~a~n~~g~~~~~~~l~V~~ 272 (314)
|.|.|.+.+..+.....+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999999888888888888864
No 221
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.94 E-value=4e-08 Score=64.83 Aligned_cols=72 Identities=22% Similarity=0.383 Sum_probs=53.6
Q ss_pred cceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEec
Q psy15734 29 ANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINT 108 (314)
Q Consensus 29 ~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 108 (314)
..+.+..|+++.|.|.+.+.+...+.|+++++..+. ...++....... ...|.|.+++.+|+|.|.|.+.+
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~--------~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~ 72 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA--------ESGRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATN 72 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC--------CCCcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEc
Confidence 456788999999999998877889999996233221 233444443322 34799999999999999999975
Q ss_pred C
Q psy15734 109 V 109 (314)
Q Consensus 109 ~ 109 (314)
.
T Consensus 73 ~ 73 (86)
T smart00410 73 S 73 (86)
T ss_pred C
Confidence 4
No 222
>smart00409 IG Immunoglobulin.
Probab=98.94 E-value=4e-08 Score=64.83 Aligned_cols=72 Identities=22% Similarity=0.383 Sum_probs=53.6
Q ss_pred cceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEec
Q psy15734 29 ANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINT 108 (314)
Q Consensus 29 ~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 108 (314)
..+.+..|+++.|.|.+.+.+...+.|+++++..+. ...++....... ...|.|.+++.+|+|.|.|.+.+
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~--------~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~ 72 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA--------ESGRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATN 72 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC--------CCCcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEc
Confidence 456788999999999998877889999996233221 233444443322 34799999999999999999975
Q ss_pred C
Q psy15734 109 V 109 (314)
Q Consensus 109 ~ 109 (314)
.
T Consensus 73 ~ 73 (86)
T smart00409 73 S 73 (86)
T ss_pred C
Confidence 4
No 223
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.93 E-value=8.3e-09 Score=71.92 Aligned_cols=79 Identities=14% Similarity=0.169 Sum_probs=55.8
Q ss_pred cCCCcceeecCccEEEEEEEeecCCceeEEecCCCe--e--ee---------cCCceeeeEeeCCeeeEEEEEEeecCCC
Q psy15734 180 IPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGD--M--II---------TGDDYEDSRLINGYSCHMTLKIRSILSH 246 (314)
Q Consensus 180 ~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~--~--~~---------~~~~~~~~~~~~~~~~~s~L~i~~~~~~ 246 (314)
.++....+.+|++++|.|.+.+.+...+.|++.... . +. ...++.+..... .....|.|.+++.+
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~--~~~~~L~I~~~~~~ 80 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKS--RKSSSLHISAAQLS 80 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEccc--CCEEEEEECCCCHH
Confidence 456677899999999999999888889999985321 0 00 112222221111 13458999999999
Q ss_pred CCeEEEEEEeeCCC
Q psy15734 247 QFGSYRCVAVNALG 260 (314)
Q Consensus 247 d~G~Y~C~a~n~~g 260 (314)
|+|.|.|.+.+..+
T Consensus 81 DsG~Y~C~~~~~~~ 94 (109)
T cd04983 81 DSAVYFCALSESGG 94 (109)
T ss_pred HCEEEEEEEecCCC
Confidence 99999999987653
No 224
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.93 E-value=9.8e-09 Score=68.57 Aligned_cols=66 Identities=18% Similarity=0.287 Sum_probs=47.6
Q ss_pred ceEEEcCCcEEEEEEecC-----CCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEE
Q psy15734 30 NVTATVGKEALMACVVEN-----LREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMC 104 (314)
Q Consensus 30 ~~~v~~g~~~~l~C~~~~-----~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 104 (314)
...+.+|+++.|.|...+ .+.+.+.|+|++ ..+. .+.+ .+. ..+.|.|.+++.+|+|.|+|
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~-~~i~--------~~~~-~~~----~~~~L~I~~v~~~DsG~YtC 69 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDC-KLLE--------GDRK-RFV----KGSKLLIQNVTEEDAGNYTC 69 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECC-EECC--------CCcc-EEe----cCCEEEEeeCChhhCEEEEE
Confidence 467889999999998743 256899999954 4322 1111 111 12379999999999999999
Q ss_pred EEecC
Q psy15734 105 QINTV 109 (314)
Q Consensus 105 ~~~~~ 109 (314)
.+.+.
T Consensus 70 ~~~n~ 74 (92)
T cd05757 70 KLTFT 74 (92)
T ss_pred EEEec
Confidence 99764
No 225
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.93 E-value=1.6e-08 Score=66.09 Aligned_cols=67 Identities=22% Similarity=0.368 Sum_probs=49.3
Q ss_pred CceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeE
Q psy15734 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGW 101 (314)
Q Consensus 22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 101 (314)
|.+..++ ..+.+|++++|.|.+.+.+...+.|++++ ..+.. ... .|.|.+++.+|+|.
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~-~~~~~--------~~~-----------~~~~~~~~~~~~g~ 59 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNG-SPINS--------SQN-----------GLFIPNVSPEDSGN 59 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETT-EEEEE--------ESS-----------EEEESSEEGGGTEE
T ss_pred cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeee-eeeee--------eee-----------eeeeeeeccccCEE
Confidence 4444444 66899999999999998878899999944 33221 000 27778899999999
Q ss_pred EEEEEecCC
Q psy15734 102 YMCQINTVP 110 (314)
Q Consensus 102 Y~C~~~~~~ 110 (314)
|+|.+.+..
T Consensus 60 y~C~~~~~~ 68 (80)
T PF13895_consen 60 YTCRASNGS 68 (80)
T ss_dssp EEEEEEETT
T ss_pred EEEEEEeCC
Confidence 999997644
No 226
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.92 E-value=2.1e-08 Score=68.54 Aligned_cols=80 Identities=23% Similarity=0.170 Sum_probs=53.5
Q ss_pred CCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc----eeEEEeeee--ee----ecCcCEEEEeCCceeEEEEEeeecC
Q psy15734 27 PVANVTATVGKEALMACVVENLREYKVAWVKMIT----QTILSIHHK--VV----TQNKRVSITFNDHRSWFLHLRDVQE 96 (314)
Q Consensus 27 ~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~----~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~L~i~~~~~ 96 (314)
++-+..+.+|+++.|.|.........+.|+|... ..+...... .. ...+|..+..+ ++|.|.+++.
T Consensus 4 e~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~n----gSL~I~~v~~ 79 (105)
T cd05774 4 ELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPN----GSLLIQNVTQ 79 (105)
T ss_pred eccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCC----CcEEEecCCc
Confidence 3445568899999999987655667999999532 122111110 00 12345555543 3899999999
Q ss_pred CCCeEEEEEEecCC
Q psy15734 97 TDRGWYMCQINTVP 110 (314)
Q Consensus 97 ~d~G~Y~C~~~~~~ 110 (314)
+|+|.|+|.+.+..
T Consensus 80 ~D~G~Y~~~v~~~~ 93 (105)
T cd05774 80 KDTGFYTLQTITTN 93 (105)
T ss_pred ccCEEEEEEEEeCC
Confidence 99999999997654
No 227
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.92 E-value=1.9e-08 Score=68.80 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=32.0
Q ss_pred EEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734 235 HMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270 (314)
Q Consensus 235 ~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 270 (314)
..+|+|.+++.+|+|.|+|.+.|..+..+..+.|+|
T Consensus 64 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 64 SVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred cEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence 359999999999999999999998888788888876
No 228
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.92 E-value=7.4e-09 Score=69.75 Aligned_cols=74 Identities=16% Similarity=0.165 Sum_probs=49.3
Q ss_pred CCcEEEEEEecCCCceEEEEEEcCceeEEEee-----eeee----ecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEE
Q psy15734 36 GKEALMACVVENLREYKVAWVKMITQTILSIH-----HKVV----TQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI 106 (314)
Q Consensus 36 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 106 (314)
|++|+|+|.........+.|++.......... .... ...+|+.+..+ ++|.|.+++.+|+|.|+|.+
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~----~sL~I~~l~~~DsG~Y~c~v 76 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN----GSLLIQNLTKEDSGTYTLQI 76 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC----ceEEEccCCchhcEEEEEEE
Confidence 78999999997767789999996533211110 0001 11234444332 58999999999999999999
Q ss_pred ecCCCcc
Q psy15734 107 NTVPMTS 113 (314)
Q Consensus 107 ~~~~~~~ 113 (314)
.......
T Consensus 77 ~~~~~~~ 83 (92)
T cd05741 77 ISTNGVT 83 (92)
T ss_pred EcCCCcE
Confidence 6554333
No 229
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.92 E-value=8.4e-09 Score=69.02 Aligned_cols=74 Identities=15% Similarity=0.279 Sum_probs=48.9
Q ss_pred cceEEEcCCcEEEEEEe-c----------CCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCC
Q psy15734 29 ANVTATVGKEALMACVV-E----------NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQET 97 (314)
Q Consensus 29 ~~~~v~~g~~~~l~C~~-~----------~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 97 (314)
....+.+||.+.|.|.. . ......+.|||++...... .. ....+.|+..... .|.|.++..+
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~-~~-~~~~~~Ri~~~~~-----~Lwf~Pa~~e 80 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEP-IE-IIFDGVRMSKEED-----SIWFRPAELQ 80 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCC-Cc-ccccceeEEEeCC-----EEEEEeCChh
Confidence 45778999999999996 1 1123589999964221110 00 0011135444333 7999999999
Q ss_pred CCeEEEEEEecC
Q psy15734 98 DRGWYMCQINTV 109 (314)
Q Consensus 98 d~G~Y~C~~~~~ 109 (314)
|+|.|+|.+.|.
T Consensus 81 DSG~Y~C~~rN~ 92 (104)
T cd05896 81 DSGLYTCVLRNS 92 (104)
T ss_pred hCeEEEEEECCC
Confidence 999999999765
No 230
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.91 E-value=9.6e-09 Score=70.17 Aligned_cols=86 Identities=16% Similarity=0.131 Sum_probs=56.4
Q ss_pred cCCCcceeecCccEEEEEEEeecCCceeEEecCCCe----eee---cC---------CceeeeEeeCCeeeEEEEEEeec
Q psy15734 180 IPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGD----MII---TG---------DDYEDSRLINGYSCHMTLKIRSI 243 (314)
Q Consensus 180 ~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~----~~~---~~---------~~~~~~~~~~~~~~~s~L~i~~~ 243 (314)
+.+....+.+|+++.|.|.....+...+.|+|.... .+. .. ..-+.....++ +|.|.++
T Consensus 3 ie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng-----SL~I~~v 77 (105)
T cd05774 3 IELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG-----SLLIQNV 77 (105)
T ss_pred EeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC-----cEEEecC
Confidence 445556788999999998764444448899996321 110 00 01112233444 9999999
Q ss_pred CCCCCeEEEEEEeeCC-CCceeEEEEEE
Q psy15734 244 LSHQFGSYRCVAVNAL-GETDGFIKVYV 270 (314)
Q Consensus 244 ~~~d~G~Y~C~a~n~~-g~~~~~~~l~V 270 (314)
+.+|+|.|+|.+.+.. ......+.|.|
T Consensus 78 ~~~D~G~Y~~~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 78 TQKDTGFYTLQTITTNFQVEQATVHLQV 105 (105)
T ss_pred CcccCEEEEEEEEeCCccEEEEEEEEEC
Confidence 9999999999999987 34455555543
No 231
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.91 E-value=1.1e-08 Score=69.28 Aligned_cols=76 Identities=16% Similarity=0.326 Sum_probs=50.0
Q ss_pred EcCCcEEEEEEecC-CCceEEEEEEcCceeEEEee----eeeeecC----cCEEEEeCCceeEEEEEeeecCCCCeEEEE
Q psy15734 34 TVGKEALMACVVEN-LREYKVAWVKMITQTILSIH----HKVVTQN----KRVSITFNDHRSWFLHLRDVQETDRGWYMC 104 (314)
Q Consensus 34 ~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 104 (314)
..|++|+|+|.... .....+.|++.....+.... ......+ .|+.+ +..+++|.|.+++.+|+|.|.|
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~---~~~~~sL~I~~~~~~DsG~Y~c 78 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNF---SQNDYSLQISNLKMEDAGSYRA 78 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEe---cCCceeEEECCCchHHCEEEEE
Confidence 36999999999865 55678999996433333222 1111112 23333 2234689999999999999999
Q ss_pred EEecCCCc
Q psy15734 105 QINTVPMT 112 (314)
Q Consensus 105 ~~~~~~~~ 112 (314)
.+......
T Consensus 79 ~v~~~~~~ 86 (97)
T cd05775 79 EINTKNGV 86 (97)
T ss_pred EEEcCCCC
Confidence 99654433
No 232
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.91 E-value=2.1e-08 Score=70.71 Aligned_cols=83 Identities=14% Similarity=0.298 Sum_probs=58.5
Q ss_pred cCCcceEEEcCCcEEEEEEecC--CCceEEEEEEcCc-e---eEEEeeee-e-----eecCcCEEEEeCCc-eeEEEEEe
Q psy15734 26 EPVANVTATVGKEALMACVVEN--LREYKVAWVKMIT-Q---TILSIHHK-V-----VTQNKRVSITFNDH-RSWFLHLR 92 (314)
Q Consensus 26 ~~~~~~~v~~g~~~~l~C~~~~--~~~~~v~W~~~~~-~---~~~~~~~~-~-----~~~~~~~~~~~~~~-~~~~L~i~ 92 (314)
..+..+.+.+|++++|.|.+.+ .+...+.||+... . .+...... . .....|+.+..+.. ..+.|.|.
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 82 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ 82 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence 3567788999999999999976 5678999999632 1 12111110 0 01245777765543 56789999
Q ss_pred eecCCCCeEEEEEEec
Q psy15734 93 DVQETDRGWYMCQINT 108 (314)
Q Consensus 93 ~~~~~d~G~Y~C~~~~ 108 (314)
+++.+|+|.|.|.+..
T Consensus 83 ~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 83 NLEKEDSATYYCAYWE 98 (116)
T ss_pred ECCHHHCEEEEEEEec
Confidence 9999999999999853
No 233
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.90 E-value=3.2e-08 Score=68.50 Aligned_cols=87 Identities=20% Similarity=0.239 Sum_probs=53.8
Q ss_pred cCCcEEEEEEecCC------CceEEEEEEcCce----eE-EEe-ee-eee--ecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734 35 VGKEALMACVVENL------REYKVAWVKMITQ----TI-LSI-HH-KVV--TQNKRVSITFNDHRSWFLHLRDVQETDR 99 (314)
Q Consensus 35 ~g~~~~l~C~~~~~------~~~~v~W~~~~~~----~~-~~~-~~-~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 99 (314)
.|++++|+|.+... ....|.|++.... .. ... .. ... ...+|+.+........+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 48999999998654 3467999996421 11 111 00 001 1134666644333456899999999999
Q ss_pred eEEEEEEecC-CCcceeEEEEEE
Q psy15734 100 GWYMCQINTV-PMTSQKGYLQVV 121 (314)
Q Consensus 100 G~Y~C~~~~~-~~~~~~~~l~v~ 121 (314)
|.|.|.+.+. +.....+.|.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEE
Confidence 9999999653 333444455553
No 234
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.90 E-value=1.3e-08 Score=67.35 Aligned_cols=82 Identities=16% Similarity=0.229 Sum_probs=50.2
Q ss_pred CCcEEEEEEecCC--CceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCc
Q psy15734 36 GKEALMACVVENL--REYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMT 112 (314)
Q Consensus 36 g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~ 112 (314)
|+++.|.|.+.+. +...+.|.+.+........ ....+............|.|.+++.+|+|.|+|.+.+. +..
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~----~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~ 76 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKS----VSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIA 76 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCccccccee----cccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEe
Confidence 7899999999764 4578899886543211000 00001111111112348999999999999999999774 334
Q ss_pred ceeEEEEEE
Q psy15734 113 SQKGYLQVV 121 (314)
Q Consensus 113 ~~~~~l~v~ 121 (314)
.....|.|+
T Consensus 77 ~~~t~~~V~ 85 (86)
T cd05862 77 KNSTIVIVH 85 (86)
T ss_pred cccEEEEEe
Confidence 445556654
No 235
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.90 E-value=2.3e-08 Score=65.19 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=52.8
Q ss_pred CcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEe
Q psy15734 28 VANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQIN 107 (314)
Q Consensus 28 ~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 107 (314)
...+++.+|+++.|+|...+. ...+.|++++.. + ..+.++..... -|.|.+++.+|+|.|.|.+.
T Consensus 3 ~~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~-l--------~~~~r~~~~~~-----GLlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 3 VKNRTVAPGADVVLPCQLRSN-LASPVWLFNGTP-L--------NAQFSYRVGTD-----GLLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred ceEEEEecCCCEEEECCCCCC-CccEEEEECCcc-c--------CCCcceEEeCC-----CCEEEECCHhhCEEEEEEEe
Confidence 356889999999999999875 459999995533 2 22345554443 38899999999999999986
Q ss_pred cCCCcc
Q psy15734 108 TVPMTS 113 (314)
Q Consensus 108 ~~~~~~ 113 (314)
..+...
T Consensus 68 E~gf~~ 73 (85)
T cd05872 68 EEGFQQ 73 (85)
T ss_pred cCCCeE
Confidence 444443
No 236
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.89 E-value=5.2e-08 Score=68.39 Aligned_cols=84 Identities=23% Similarity=0.453 Sum_probs=58.7
Q ss_pred cCCcceEEEcCCcEEEEEEec-CCCceEEEEEEcCc----eeEEEe------eeeeeecCcCEEEEeC-CceeEEEEEee
Q psy15734 26 EPVANVTATVGKEALMACVVE-NLREYKVAWVKMIT----QTILSI------HHKVVTQNKRVSITFN-DHRSWFLHLRD 93 (314)
Q Consensus 26 ~~~~~~~v~~g~~~~l~C~~~-~~~~~~v~W~~~~~----~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~L~i~~ 93 (314)
.++..+.+.+|+++.|.|... ......+.|++... ..+... .........++.+..+ ....++|.|.+
T Consensus 6 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~ 85 (114)
T PF07686_consen 6 QPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKN 85 (114)
T ss_dssp EEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESS
T ss_pred EeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECC
Confidence 457789999999999999998 55667999999543 112200 0011122346665544 33567899999
Q ss_pred ecCCCCeEEEEEEecC
Q psy15734 94 VQETDRGWYMCQINTV 109 (314)
Q Consensus 94 ~~~~d~G~Y~C~~~~~ 109 (314)
++.+|+|.|.|.+...
T Consensus 86 l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 86 LQPSDSGTYFCQVSTS 101 (114)
T ss_dssp ESGGGEEEEEEEEEES
T ss_pred CCcCcCEEEEEEEEEC
Confidence 9999999999999654
No 237
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.89 E-value=4.4e-09 Score=76.68 Aligned_cols=71 Identities=14% Similarity=0.188 Sum_probs=54.9
Q ss_pred EEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCeeEEEEcc--ccccEeEEEEEeeccCC--CccceE
Q psy15734 237 TLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMS--RLHMGAYLCIASNGVVP--SVSHRI 307 (314)
Q Consensus 237 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~--~~~~g~~~C~a~~~~~~--~~~w~v 307 (314)
+|.|.+++.+|+|.|.|.+.+..|.....+.|.|..+|...+...... .+....++|.|.+++++ .|.|.-
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~ 76 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTR 76 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEE
Confidence 799999999999999999999989999999999987754433322111 23445799999998664 688954
No 238
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.89 E-value=4e-08 Score=68.00 Aligned_cols=88 Identities=19% Similarity=0.251 Sum_probs=53.7
Q ss_pred cCCcEEEEEEecCC------CceEEEEEEcC--c--e-eEEEeeeeee--ecC--cCEEEEeCCceeEEEEEeeecCCCC
Q psy15734 35 VGKEALMACVVENL------REYKVAWVKMI--T--Q-TILSIHHKVV--TQN--KRVSITFNDHRSWFLHLRDVQETDR 99 (314)
Q Consensus 35 ~g~~~~l~C~~~~~------~~~~v~W~~~~--~--~-~~~~~~~~~~--~~~--~~~~~~~~~~~~~~L~i~~~~~~d~ 99 (314)
.|++++|+|.+... ....+.|++.. . . .+........ ... .|+.+........+|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 48999999998653 35799999962 1 1 1111111111 111 2333222233456899999999999
Q ss_pred eEEEEEEecC-CCcceeEEEEEEe
Q psy15734 100 GWYMCQINTV-PMTSQKGYLQVVV 122 (314)
Q Consensus 100 G~Y~C~~~~~-~~~~~~~~l~v~~ 122 (314)
|.|.|.+.+. ......+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 9999999754 3335555666643
No 239
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.88 E-value=2e-08 Score=69.52 Aligned_cols=83 Identities=18% Similarity=0.284 Sum_probs=56.6
Q ss_pred cCccEEEEEEEeecC------CceeEEecCCCe-----e-eecCCc-------e--eeeEeeCCeeeEEEEEEeecCCCC
Q psy15734 189 VSQTVELHCHTEAFP------ASLNYWTNEKGD-----M-IITGDD-------Y--EDSRLINGYSCHMTLKIRSILSHQ 247 (314)
Q Consensus 189 ~g~~~~l~C~~~g~p------~p~~~W~~~~~~-----~-~~~~~~-------~--~~~~~~~~~~~~s~L~i~~~~~~d 247 (314)
.|++++|.|.....| ...+.|++.... . ...... + +...... .....+|.|.+++.+|
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~~v~~~D 79 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRA-HDLDASLVITDLRLED 79 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCC-CCCcEEEEEccCChHH
Confidence 489999999987764 356899986421 1 111100 1 1111100 0124589999999999
Q ss_pred CeEEEEEEeeCCCCceeEEEEEEEe
Q psy15734 248 FGSYRCVAVNALGETDGFIKVYVNL 272 (314)
Q Consensus 248 ~G~Y~C~a~n~~g~~~~~~~l~V~~ 272 (314)
+|.|.|.+.+..+.....+.|.|..
T Consensus 80 sG~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 80 YGRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred CEEEEEEEEecccceEEEEEEEEEE
Confidence 9999999999999889999888864
No 240
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.88 E-value=5.9e-08 Score=67.68 Aligned_cols=82 Identities=16% Similarity=0.301 Sum_probs=54.1
Q ss_pred CcceEEEcCCcEEEEEEecCC----CceEEEEEEc-Cce----eEEEe-eeeeee-c----CcCEEEEeCC-ceeEEEEE
Q psy15734 28 VANVTATVGKEALMACVVENL----REYKVAWVKM-ITQ----TILSI-HHKVVT-Q----NKRVSITFND-HRSWFLHL 91 (314)
Q Consensus 28 ~~~~~v~~g~~~~l~C~~~~~----~~~~v~W~~~-~~~----~~~~~-~~~~~~-~----~~~~~~~~~~-~~~~~L~i 91 (314)
+..+.+..|+++.|+|.+... +...+.|.+. ... .+... ...... . .+|+.+..+. .+..+|.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 457789999999999999652 3479999442 211 11111 111111 1 2366655433 34568999
Q ss_pred eeecCCCCeEEEEEEecC
Q psy15734 92 RDVQETDRGWYMCQINTV 109 (314)
Q Consensus 92 ~~~~~~d~G~Y~C~~~~~ 109 (314)
.+++.+|+|.|+|.+.+.
T Consensus 85 ~nv~~sD~G~Y~C~v~n~ 102 (116)
T cd05879 85 HNLDYTDNGTFTCDVKNP 102 (116)
T ss_pred ccCCcccCEEEEEEEEcC
Confidence 999999999999999764
No 241
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.87 E-value=2.2e-08 Score=69.29 Aligned_cols=80 Identities=18% Similarity=0.341 Sum_probs=55.0
Q ss_pred eEEEcCCcEEEEEEecCC-CceEEEEEEcCc--e--eEEEeeee----eeecCcCEEEEeCCc-eeEEEEEeeecCCCCe
Q psy15734 31 VTATVGKEALMACVVENL-REYKVAWVKMIT--Q--TILSIHHK----VVTQNKRVSITFNDH-RSWFLHLRDVQETDRG 100 (314)
Q Consensus 31 ~~v~~g~~~~l~C~~~~~-~~~~v~W~~~~~--~--~~~~~~~~----~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G 100 (314)
+.+.+|++++|.|.+... +...+.|++... . .+...... ......|+.+..... ..++|.|.+++.+|+|
T Consensus 1 ~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G 80 (105)
T cd00099 1 LSVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA 80 (105)
T ss_pred CeecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence 357899999999999875 677999999643 1 11111110 012235666655432 5678999999999999
Q ss_pred EEEEEEecCC
Q psy15734 101 WYMCQINTVP 110 (314)
Q Consensus 101 ~Y~C~~~~~~ 110 (314)
.|.|.+.+..
T Consensus 81 ~Y~C~v~~~~ 90 (105)
T cd00099 81 VYYCAVSLSG 90 (105)
T ss_pred EEEEEEecCC
Confidence 9999996543
No 242
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.87 E-value=5.7e-08 Score=68.37 Aligned_cols=83 Identities=20% Similarity=0.373 Sum_probs=52.9
Q ss_pred CCcceEEEcCCcEEEEEEecCCC----ceEEEEEEcCc-----eeEEEeee-eeee-cC----cCEEEEeC-CceeEEEE
Q psy15734 27 PVANVTATVGKEALMACVVENLR----EYKVAWVKMIT-----QTILSIHH-KVVT-QN----KRVSITFN-DHRSWFLH 90 (314)
Q Consensus 27 ~~~~~~v~~g~~~~l~C~~~~~~----~~~v~W~~~~~-----~~~~~~~~-~~~~-~~----~~~~~~~~-~~~~~~L~ 90 (314)
.|..+.+.+|++++|+|.+.... ...+.|++... ..+..... .... .. .|+.+..+ ..+..+|+
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 36678899999999999985432 36799987432 11111110 1011 11 34444432 12346899
Q ss_pred EeeecCCCCeEEEEEEecC
Q psy15734 91 LRDVQETDRGWYMCQINTV 109 (314)
Q Consensus 91 i~~~~~~d~G~Y~C~~~~~ 109 (314)
|.+++.+|+|.|.|.+.+.
T Consensus 84 I~~v~~~D~G~Y~C~v~~~ 102 (116)
T cd05715 84 IHNLQFTDNGTYTCDVKNP 102 (116)
T ss_pred EeeCCcccCEEEEEEEEeC
Confidence 9999999999999999754
No 243
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.86 E-value=9.3e-08 Score=66.18 Aligned_cols=86 Identities=20% Similarity=0.305 Sum_probs=53.0
Q ss_pred cCCcEEEEEEecCCC------------ceEEEEEEcCc---eeEE-Eeeeeee---ecCcCEEEEeC--CceeEEEEEee
Q psy15734 35 VGKEALMACVVENLR------------EYKVAWVKMIT---QTIL-SIHHKVV---TQNKRVSITFN--DHRSWFLHLRD 93 (314)
Q Consensus 35 ~g~~~~l~C~~~~~~------------~~~v~W~~~~~---~~~~-~~~~~~~---~~~~~~~~~~~--~~~~~~L~i~~ 93 (314)
.|++++|+|...... .+.+.|++... ..+. ....... .-.+|+.+... .....+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999986432 46999998532 1222 1111111 11236666541 23456899999
Q ss_pred ecCCCCeEEEEEEecC-CCcceeEEEEE
Q psy15734 94 VQETDRGWYMCQINTV-PMTSQKGYLQV 120 (314)
Q Consensus 94 ~~~~d~G~Y~C~~~~~-~~~~~~~~l~v 120 (314)
++.+|+|.|+|.+... ......+.|.|
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v 108 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQV 108 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEE
Confidence 9999999999999743 23333344444
No 244
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.86 E-value=3.4e-08 Score=68.35 Aligned_cols=84 Identities=17% Similarity=0.291 Sum_probs=54.9
Q ss_pred cCccEEEEEEEeecC------------CceeEEecCCC---eeee-c-C------Cce--eeeEee-CCeeeEEEEEEee
Q psy15734 189 VSQTVELHCHTEAFP------------ASLNYWTNEKG---DMII-T-G------DDY--EDSRLI-NGYSCHMTLKIRS 242 (314)
Q Consensus 189 ~g~~~~l~C~~~g~p------------~p~~~W~~~~~---~~~~-~-~------~~~--~~~~~~-~~~~~~s~L~i~~ 242 (314)
.|++++|.|...... .+.|.|++... ..+. . . ..| +.+... .......+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999987543 35889998421 1111 1 1 111 111111 0011345999999
Q ss_pred cCCCCCeEEEEEEeeCCCCceeEEEEEEEe
Q psy15734 243 ILSHQFGSYRCVAVNALGETDGFIKVYVNL 272 (314)
Q Consensus 243 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 272 (314)
++.+|+|.|.|.+.+........+.|.|..
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 999999999999998777777777777753
No 245
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.86 E-value=5.3e-08 Score=67.89 Aligned_cols=85 Identities=14% Similarity=0.095 Sum_probs=53.5
Q ss_pred CCcceeecCccEEEEEEEeec----CCceeEEecCC--------------Ceeee-cCCce--eeeEeeCCeeeEEEEEE
Q psy15734 182 NQLEGAFVSQTVELHCHTEAF----PASLNYWTNEK--------------GDMII-TGDDY--EDSRLINGYSCHMTLKI 240 (314)
Q Consensus 182 ~~~~~v~~g~~~~l~C~~~g~----p~p~~~W~~~~--------------~~~~~-~~~~~--~~~~~~~~~~~~s~L~i 240 (314)
+....+..|+++.|.|..... +...+.|.+.. +.... ....+ ++....+......+|.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 345678899999999999764 34588994321 11110 00111 11111121234569999
Q ss_pred eecCCCCCeEEEEEEeeCCCCceeEE
Q psy15734 241 RSILSHQFGSYRCVAVNALGETDGFI 266 (314)
Q Consensus 241 ~~~~~~d~G~Y~C~a~n~~g~~~~~~ 266 (314)
.+++.+|.|+|+|.+.|..+......
T Consensus 85 ~nv~~sD~G~Y~C~v~n~p~~~~~~~ 110 (116)
T cd05879 85 HNLDYTDNGTFTCDVKNPPDIVGKSS 110 (116)
T ss_pred ccCCcccCEEEEEEEEcCCCcCCcee
Confidence 99999999999999999877544433
No 246
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.85 E-value=9.3e-08 Score=65.16 Aligned_cols=84 Identities=19% Similarity=0.312 Sum_probs=51.4
Q ss_pred CcEEEEEEecCCC---ceEEEEEEcCce---eEEEeee---eeee--cCcCEEEEeCCceeEEEEEeeecCCCCeEEEEE
Q psy15734 37 KEALMACVVENLR---EYKVAWVKMITQ---TILSIHH---KVVT--QNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQ 105 (314)
Q Consensus 37 ~~~~l~C~~~~~~---~~~v~W~~~~~~---~~~~~~~---~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 105 (314)
++++|+|.+.... ...|.|+|.... .+..... .... ...|+.+........+|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 5789999996543 468999996532 1111110 0011 133555444333456899999999999999999
Q ss_pred EecC--CCcceeEEEEE
Q psy15734 106 INTV--PMTSQKGYLQV 120 (314)
Q Consensus 106 ~~~~--~~~~~~~~l~v 120 (314)
+... +.......|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 8643 33344444444
No 247
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.84 E-value=2.9e-08 Score=68.66 Aligned_cols=83 Identities=17% Similarity=0.260 Sum_probs=56.0
Q ss_pred ecCCcceEEEcCCcEEEEEEecCCC-ceEEEEEEcCc----eeEEEeeee-eeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734 25 AEPVANVTATVGKEALMACVVENLR-EYKVAWVKMIT----QTILSIHHK-VVTQNKRVSITFNDHRSWFLHLRDVQETD 98 (314)
Q Consensus 25 ~~~~~~~~v~~g~~~~l~C~~~~~~-~~~v~W~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 98 (314)
...|..+.+.+|++++|.|.+.+.. ...+.|||... ..+...... ......|+..... ...+.|.|.+++++|
T Consensus 4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~~~~~D 82 (106)
T cd04980 4 TQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGS-GTDFTLTISRVEPED 82 (106)
T ss_pred EECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEecc-CCEEEEEECCCChHH
Confidence 4557788999999999999997654 56899998642 112111110 0111245655432 345689999999999
Q ss_pred CeEEEEEEec
Q psy15734 99 RGWYMCQINT 108 (314)
Q Consensus 99 ~G~Y~C~~~~ 108 (314)
+|.|.|.+.+
T Consensus 83 sg~Y~Ca~~~ 92 (106)
T cd04980 83 AAVYYCQQYG 92 (106)
T ss_pred CEEEEEEEeC
Confidence 9999999853
No 248
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.84 E-value=9.8e-08 Score=66.87 Aligned_cols=84 Identities=21% Similarity=0.347 Sum_probs=52.5
Q ss_pred CCcceEEEcCCcEEEEEEecCCC----ceEEEEEEcC---ce--eEEEeee-eeeecC----cCEEEEeC-CceeEEEEE
Q psy15734 27 PVANVTATVGKEALMACVVENLR----EYKVAWVKMI---TQ--TILSIHH-KVVTQN----KRVSITFN-DHRSWFLHL 91 (314)
Q Consensus 27 ~~~~~~v~~g~~~~l~C~~~~~~----~~~v~W~~~~---~~--~~~~~~~-~~~~~~----~~~~~~~~-~~~~~~L~i 91 (314)
.+..+.+.+|++++|.|.+...+ ...+.|++.. .. .+..... ...... .|+.+..+ .....+|+|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I 83 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI 83 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence 45678999999999999985422 3579998631 11 1211111 001112 23333322 223457999
Q ss_pred eeecCCCCeEEEEEEecCC
Q psy15734 92 RDVQETDRGWYMCQINTVP 110 (314)
Q Consensus 92 ~~~~~~d~G~Y~C~~~~~~ 110 (314)
.+++.+|+|.|+|.+.+.+
T Consensus 84 ~~v~~~D~G~Y~C~v~~~~ 102 (115)
T cd05880 84 WQLQPTDNGTYTCQVKNPP 102 (115)
T ss_pred eeCChhhCEEEEEEEEeCC
Confidence 9999999999999997643
No 249
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.84 E-value=3.1e-08 Score=66.34 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=51.0
Q ss_pred CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734 176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA 255 (314)
Q Consensus 176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a 255 (314)
|.+...+. ..|..|++|+|.|... .+...+.|++++........ ... .....+.|.+++.+|+|.|+|..
T Consensus 3 P~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~------~~~--~~~~~f~i~~v~~~~~G~Y~C~~ 72 (91)
T cd05751 3 PSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKP------PEP--QNKAKFFIPSMKREHAGRYRCYY 72 (91)
T ss_pred CEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCcccccc------CCC--ceeEEEEccCCChhHCEEEEEEE
Confidence 44444443 3678999999999886 66778889987543221100 001 11238999999999999999999
Q ss_pred eeC
Q psy15734 256 VNA 258 (314)
Q Consensus 256 ~n~ 258 (314)
.+.
T Consensus 73 ~~~ 75 (91)
T cd05751 73 RSG 75 (91)
T ss_pred ECC
Confidence 886
No 250
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.83 E-value=9.7e-08 Score=66.27 Aligned_cols=88 Identities=19% Similarity=0.319 Sum_probs=56.0
Q ss_pred cCCcEEEEEEecCCC----------ceEEEEEEcCc-ee--EEEeeeeee----ecCcCEEEEeC--CceeEEEEEeeec
Q psy15734 35 VGKEALMACVVENLR----------EYKVAWVKMIT-QT--ILSIHHKVV----TQNKRVSITFN--DHRSWFLHLRDVQ 95 (314)
Q Consensus 35 ~g~~~~l~C~~~~~~----------~~~v~W~~~~~-~~--~~~~~~~~~----~~~~~~~~~~~--~~~~~~L~i~~~~ 95 (314)
.|++++|+|.....+ ...+.|++... .. +........ .-.+|+.+..+ .....+|.|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 489999999996532 37899999632 11 111111111 11246555432 2344589999999
Q ss_pred CCCCeEEEEEEecC-CCcceeEEEEEEe
Q psy15734 96 ETDRGWYMCQINTV-PMTSQKGYLQVVV 122 (314)
Q Consensus 96 ~~d~G~Y~C~~~~~-~~~~~~~~l~v~~ 122 (314)
.+|+|.|.|.+... ......+.|.|..
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 99999999999654 4556666777654
No 251
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.83 E-value=1.6e-08 Score=70.44 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=53.3
Q ss_pred cCCCcceeecCccEEEEEEEeecCCceeEEecCCCe----eeec-------------CCceeeeEeeCCeeeEEEEEEee
Q psy15734 180 IPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGD----MIIT-------------GDDYEDSRLINGYSCHMTLKIRS 242 (314)
Q Consensus 180 ~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~----~~~~-------------~~~~~~~~~~~~~~~~s~L~i~~ 242 (314)
..+....+.+|++++|.|.+.+ +.+.+.|++.... .+.. ..++...... ....+|.|.+
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~L~I~~ 78 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPS---LTRSSLTIKS 78 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcC---CCccEEEECC
Confidence 4566778999999999999988 7788999986421 1110 1122211111 1245899999
Q ss_pred cCCCCCeEEEEEEeeCC
Q psy15734 243 ILSHQFGSYRCVAVNAL 259 (314)
Q Consensus 243 ~~~~d~G~Y~C~a~n~~ 259 (314)
++.+|+|.|.|.+.+..
T Consensus 79 ~~~~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 79 AEPEDSAVYLCASSLGG 95 (110)
T ss_pred CChhhCEEEEEEeeCCC
Confidence 99999999999998754
No 252
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.82 E-value=9.8e-08 Score=66.24 Aligned_cols=37 Identities=22% Similarity=0.415 Sum_probs=33.6
Q ss_pred EEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEe
Q psy15734 236 MTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNL 272 (314)
Q Consensus 236 s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 272 (314)
.+|+|.+++.+|+|.|.|.+.......+..+.|.|..
T Consensus 72 asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 72 ASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred EEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 4899999999999999999999888888999998864
No 253
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.82 E-value=8.2e-08 Score=65.17 Aligned_cols=85 Identities=25% Similarity=0.314 Sum_probs=52.0
Q ss_pred CCcEEEEEEecCC-CceEEEEEEcCce---eEEEeee-e--ee--ecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEE
Q psy15734 36 GKEALMACVVENL-REYKVAWVKMITQ---TILSIHH-K--VV--TQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI 106 (314)
Q Consensus 36 g~~~~l~C~~~~~-~~~~v~W~~~~~~---~~~~~~~-~--~~--~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 106 (314)
|++++|+|..... ....|.|+|..+. .+..... . .. .-.+|+.+...+....+|.|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 7899999997543 3357999986432 2221111 0 01 11224444333344568999999999999999998
Q ss_pred ecC--CCcceeEEEEE
Q psy15734 107 NTV--PMTSQKGYLQV 120 (314)
Q Consensus 107 ~~~--~~~~~~~~l~v 120 (314)
... +.....+.|.|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 654 33344455555
No 254
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.82 E-value=2.8e-08 Score=61.36 Aligned_cols=61 Identities=18% Similarity=0.330 Sum_probs=44.3
Q ss_pred cCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734 35 VGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV 109 (314)
Q Consensus 35 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 109 (314)
+|+++.|.|.+.+.+.+.+.|++++ ..+. ....... ....|.|.+++.+|+|.|+|.+.+.
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~-~~~~----------~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~n~ 61 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDG-KPLP----------ESNRLSA---SGSTLTIKSVSLEDSGEYTCVAENS 61 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECC-EECC----------CCCEEec---CCcEEEEeeCCcccCEEEEEEEecC
Confidence 5889999999887788899999954 3221 1111111 1227999999999999999999653
No 255
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.80 E-value=5.7e-08 Score=66.22 Aligned_cols=79 Identities=19% Similarity=0.256 Sum_probs=52.1
Q ss_pred ccEEEEEEEeecC---CceeEEecCCCe--ee---ec---C----C--ceeeeEeeCCeeeEEEEEEeecCCCCCeEEEE
Q psy15734 191 QTVELHCHTEAFP---ASLNYWTNEKGD--MI---IT---G----D--DYEDSRLINGYSCHMTLKIRSILSHQFGSYRC 253 (314)
Q Consensus 191 ~~~~l~C~~~g~p---~p~~~W~~~~~~--~~---~~---~----~--~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C 253 (314)
++++|.|.....+ ...+.|++.... .. .. . . +.++....+.. ...+|.|.+++.+|+|.|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~-~~~sL~I~~v~~~D~G~Y~C 79 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSL-EDATISISNLRLEDEGNYIC 79 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCC-CceEEEEccCCcccCEEEEE
Confidence 5789999998765 447899996532 10 00 0 0 11111111110 24599999999999999999
Q ss_pred EEee-CCCCceeEEEEEE
Q psy15734 254 VAVN-ALGETDGFIKVYV 270 (314)
Q Consensus 254 ~a~n-~~g~~~~~~~l~V 270 (314)
.+.+ +.|.....+.|.|
T Consensus 80 ~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 80 EFATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEEeCCCCcEEEEEEEEe
Confidence 9975 6678888888776
No 256
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.79 E-value=7.4e-08 Score=65.63 Aligned_cols=80 Identities=25% Similarity=0.455 Sum_probs=53.9
Q ss_pred eEEEcCCcEEEEEEecC-CCceEEEEEEcCcee---EEEe-eeeeeecCcCEEEEeC-CceeEEEEEeeecCCCCeEEEE
Q psy15734 31 VTATVGKEALMACVVEN-LREYKVAWVKMITQT---ILSI-HHKVVTQNKRVSITFN-DHRSWFLHLRDVQETDRGWYMC 104 (314)
Q Consensus 31 ~~v~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~---~~~~-~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C 104 (314)
+.+.+|++++|+|.... .....+.|+|..... +... ........+|+.+..+ ....+.|.|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 56889999999999865 356789999964321 1111 1111122456666533 2345689999999999999999
Q ss_pred EEecCC
Q psy15734 105 QINTVP 110 (314)
Q Consensus 105 ~~~~~~ 110 (314)
.+...+
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 985433
No 257
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.79 E-value=1.5e-07 Score=62.82 Aligned_cols=85 Identities=15% Similarity=0.146 Sum_probs=57.1
Q ss_pred cceEEEcCCcEEEEEEecCCCceE-EEEEEcCceeEEEeeeeeeecCcCEEEEeCC--ceeEEEEEeeecCCCCeEEEEE
Q psy15734 29 ANVTATVGKEALMACVVENLREYK-VAWVKMITQTILSIHHKVVTQNKRVSITFND--HRSWFLHLRDVQETDRGWYMCQ 105 (314)
Q Consensus 29 ~~~~v~~g~~~~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~ 105 (314)
..+.|.+|+++.|.|.+.++|.++ +.|.+++....... +..+...... .-...|.+.+++.+|.|.|+|.
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~-------~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~ 83 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTS-------DHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFL 83 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccc-------cceeEEeccCceEEEEEEEEeecChhhCcEEEEE
Confidence 467899999999999999999987 99998643211110 1011111111 1123799999999999999999
Q ss_pred EecC-CCcceeEEEEE
Q psy15734 106 INTV-PMTSQKGYLQV 120 (314)
Q Consensus 106 ~~~~-~~~~~~~~l~v 120 (314)
+.|. ...+..+.|.|
T Consensus 84 a~N~~~~~s~tF~l~v 99 (101)
T cd05860 84 VSNSDASASVTFNVYV 99 (101)
T ss_pred EECCCCeEEEEEEEEE
Confidence 9774 33444555554
No 258
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.78 E-value=8.6e-08 Score=67.73 Aligned_cols=82 Identities=16% Similarity=0.234 Sum_probs=54.9
Q ss_pred CCcceEEEcCCcEEEEEEecCC------CceEEEEEEcCce----eEEEeeeee----eecCcCEEEEeC-CceeEEEEE
Q psy15734 27 PVANVTATVGKEALMACVVENL------REYKVAWVKMITQ----TILSIHHKV----VTQNKRVSITFN-DHRSWFLHL 91 (314)
Q Consensus 27 ~~~~~~v~~g~~~~l~C~~~~~------~~~~v~W~~~~~~----~~~~~~~~~----~~~~~~~~~~~~-~~~~~~L~i 91 (314)
.|..+.+.+|++|+|+|..... ....+.||+.... .+....... ....+|+.+..+ ...+.+|.|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 4667899999999999987532 2367999996532 111111100 112246666533 445568999
Q ss_pred eeecCCCCeEEEEEEec
Q psy15734 92 RDVQETDRGWYMCQINT 108 (314)
Q Consensus 92 ~~~~~~d~G~Y~C~~~~ 108 (314)
.+++.+|+|.|.|++..
T Consensus 85 ~~l~~~Dsg~Y~C~~~~ 101 (119)
T cd05712 85 SDAQPEDSGKYFFRVEL 101 (119)
T ss_pred ccCChhhCeEEEEEEEc
Confidence 99999999999999854
No 259
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.78 E-value=1.7e-07 Score=69.06 Aligned_cols=96 Identities=17% Similarity=0.283 Sum_probs=64.7
Q ss_pred CcceEEEcCCcEEEEEEec-CCCceEEEEEEcCceeEEEeee--eeeec--CcCEEEEeCCceeEEEEEeeecCCCCeEE
Q psy15734 28 VANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHH--KVVTQ--NKRVSITFNDHRSWFLHLRDVQETDRGWY 102 (314)
Q Consensus 28 ~~~~~v~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 102 (314)
...++|.+|+++.|.|... +.....+.|+|.++ .+..... ..+.. .+|+.+.........|+|.+++.+|+|.|
T Consensus 22 ~~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~-~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY 100 (189)
T PHA02987 22 FVKITVSEHVNVKISCNKTSSFNSILITWKKNNK-TIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCY 100 (189)
T ss_pred eEEEEEcCCCCEEEEEecCCCCccceEEEEEcCC-CEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEE
Confidence 3467899999999999984 55678999999643 3322211 11111 23666433334445899999999999999
Q ss_pred EEEEecC--C-CcceeEEEEEEeCC
Q psy15734 103 MCQINTV--P-MTSQKGYLQVVVPP 124 (314)
Q Consensus 103 ~C~~~~~--~-~~~~~~~l~v~~~p 124 (314)
.|....- + ..+....|.|..+.
T Consensus 101 ~C~F~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 101 TCIFNTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred EEEEEecCCCCCceeEEEEEEEchh
Confidence 9998543 3 44556677777643
No 260
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.77 E-value=6.3e-08 Score=68.20 Aligned_cols=84 Identities=24% Similarity=0.478 Sum_probs=57.6
Q ss_pred ecCCcceEEEcCCcEEEEEEecCC-CceEEEEEEcCce-eE--EEeeeee--eecCcCEEEEeC-CceeEEEEEeeecCC
Q psy15734 25 AEPVANVTATVGKEALMACVVENL-REYKVAWVKMITQ-TI--LSIHHKV--VTQNKRVSITFN-DHRSWFLHLRDVQET 97 (314)
Q Consensus 25 ~~~~~~~~v~~g~~~~l~C~~~~~-~~~~v~W~~~~~~-~~--~~~~~~~--~~~~~~~~~~~~-~~~~~~L~i~~~~~~ 97 (314)
...+..+.+.+|++++|.|..... ....+.|||.... .+ ....... ...++|+.+..+ ....++|.|.+++.+
T Consensus 3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~ 82 (116)
T cd07706 3 TQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLE 82 (116)
T ss_pred EEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHH
Confidence 445678899999999999998653 5578999996321 11 1111011 122457776542 334568999999999
Q ss_pred CCeEEEEEEec
Q psy15734 98 DRGWYMCQINT 108 (314)
Q Consensus 98 d~G~Y~C~~~~ 108 (314)
|+|.|.|.+..
T Consensus 83 Dsg~Y~C~~~~ 93 (116)
T cd07706 83 DSAKYFCALST 93 (116)
T ss_pred HCEEEEEEEEC
Confidence 99999999864
No 261
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.77 E-value=3.5e-08 Score=66.88 Aligned_cols=83 Identities=18% Similarity=0.140 Sum_probs=54.3
Q ss_pred ecCccEEEEEEEee-cCCceeEEecCCCeeeecCCc---eeeeEee----CCe---eeEEEEEEeecCCCCCeEEEEEEe
Q psy15734 188 FVSQTVELHCHTEA-FPASLNYWTNEKGDMIITGDD---YEDSRLI----NGY---SCHMTLKIRSILSHQFGSYRCVAV 256 (314)
Q Consensus 188 ~~g~~~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~---~~~~~~~----~~~---~~~s~L~i~~~~~~d~G~Y~C~a~ 256 (314)
.+|++|+|.|.... .....+.|++........... ....... +.. ....+|.|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 47999999998865 556688999864333322221 0000000 000 113589999999999999999999
Q ss_pred eCCCCc-eeEEEEEE
Q psy15734 257 NALGET-DGFIKVYV 270 (314)
Q Consensus 257 n~~g~~-~~~~~l~V 270 (314)
+..|.. ...+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 887655 56666665
No 262
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.76 E-value=3.6e-08 Score=66.80 Aligned_cols=73 Identities=18% Similarity=0.291 Sum_probs=53.6
Q ss_pred ecCccEEEEEEEeec-CC-ceeEEecCCCeeeecCCc-eeee-EeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734 188 FVSQTVELHCHTEAF-PA-SLNYWTNEKGDMIITGDD-YEDS-RLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE 261 (314)
Q Consensus 188 ~~g~~~~l~C~~~g~-p~-p~~~W~~~~~~~~~~~~~-~~~~-~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~ 261 (314)
..|+.+.|.|.+.|+ |. ..+.|++++.. +..... .... ..++.|...+.|.|......|.|.|+|+|.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~-~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKE-LTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEE-CCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 468999999999998 53 58999997443 332222 2222 23334788889999888888999999999997654
No 263
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.75 E-value=1.4e-07 Score=66.06 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=27.4
Q ss_pred EEEEEEeecCCCCCeEEEEEEeeCCCCc--eeEEEEE
Q psy15734 235 HMTLKIRSILSHQFGSYRCVAVNALGET--DGFIKVY 269 (314)
Q Consensus 235 ~s~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~ 269 (314)
..+|.|.+++.+|+|.|.|.+.|..+.. ...+.|.
T Consensus 78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 114 (115)
T cd05880 78 DASILIWQLQPTDNGTYTCQVKNPPDVHGPIGEIRLR 114 (115)
T ss_pred ceEEEEeeCChhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence 3489999999999999999999977642 3444444
No 264
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.75 E-value=1.9e-07 Score=60.15 Aligned_cols=78 Identities=13% Similarity=0.170 Sum_probs=52.0
Q ss_pred EEEEEEEee-cCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCC-ceeEEEEEE
Q psy15734 193 VELHCHTEA-FPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE-TDGFIKVYV 270 (314)
Q Consensus 193 ~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V 270 (314)
+.|.|.+.| .|.+.|.|++++.+ +...... ......++...++|.+..-...|...|+|+|.|+.-. ......|.|
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~-l~~~~~~-~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V 79 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKE-LTGKSTV-EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEV 79 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEE-CcCcccc-eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEE
Confidence 689999976 67889999997533 3222111 1123345677889999777777777999999996632 345556666
Q ss_pred Ee
Q psy15734 271 NL 272 (314)
Q Consensus 271 ~~ 272 (314)
..
T Consensus 80 ~y 81 (82)
T cd05883 80 QY 81 (82)
T ss_pred EE
Confidence 43
No 265
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.74 E-value=2.8e-07 Score=62.86 Aligned_cols=84 Identities=20% Similarity=0.273 Sum_probs=51.8
Q ss_pred CcEEEEEEecCCC---ceEEEEEEcCce----eEEEee----eeee-ecCcCEEEEeC-CceeEEEEEeeecCCCCeEEE
Q psy15734 37 KEALMACVVENLR---EYKVAWVKMITQ----TILSIH----HKVV-TQNKRVSITFN-DHRSWFLHLRDVQETDRGWYM 103 (314)
Q Consensus 37 ~~~~l~C~~~~~~---~~~v~W~~~~~~----~~~~~~----~~~~-~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~ 103 (314)
.+++|+|...... ...|.|+|.... .+.... ...+ ...+|..+..+ .....+|.|.+++.+|+|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~ 80 (100)
T cd05888 1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYK 80 (100)
T ss_pred CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEE
Confidence 3689999986433 458999995322 121111 0111 11246666543 344568999999999999999
Q ss_pred EEEecC--CCcceeEEEEE
Q psy15734 104 CQINTV--PMTSQKGYLQV 120 (314)
Q Consensus 104 C~~~~~--~~~~~~~~l~v 120 (314)
|.+.+- |..+..+.|.|
T Consensus 81 C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 81 CRVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEEeCCCCCeeeEEEEEe
Confidence 998653 33344445554
No 266
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.74 E-value=3.8e-07 Score=61.07 Aligned_cols=84 Identities=23% Similarity=0.342 Sum_probs=53.3
Q ss_pred CcEEEEEEecC-CCceEEEEEEcCce--eEEEeeeee----e--ecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEe
Q psy15734 37 KEALMACVVEN-LREYKVAWVKMITQ--TILSIHHKV----V--TQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQIN 107 (314)
Q Consensus 37 ~~~~l~C~~~~-~~~~~v~W~~~~~~--~~~~~~~~~----~--~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 107 (314)
++++|+|.... ....+|.|.|.... ...+..... + .-.+|+.+...+....+|.|.|++.+|+|.|.|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 47899999964 34479999985431 111111110 1 123466665444455689999999999999999996
Q ss_pred cC--CCcceeEEEEE
Q psy15734 108 TV--PMTSQKGYLQV 120 (314)
Q Consensus 108 ~~--~~~~~~~~l~v 120 (314)
.- |.......|.|
T Consensus 81 tfP~G~~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSSTTVTV 95 (96)
T ss_pred eCCCCCeeEEEEEEE
Confidence 65 34444455554
No 267
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.74 E-value=8.5e-08 Score=64.52 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=50.8
Q ss_pred CccEEEEEEEeecCCceeEEecCCCeeeec--------C-----Cce--eeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734 190 SQTVELHCHTEAFPASLNYWTNEKGDMIIT--------G-----DDY--EDSRLINGYSCHMTLKIRSILSHQFGSYRCV 254 (314)
Q Consensus 190 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~--------~-----~~~--~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~ 254 (314)
|++|+|.|.....+...+.|++........ . ..+ +.....+ .+|.|.+++.+|+|.|+|.
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~-----~sL~I~~l~~~DsG~Y~c~ 75 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN-----GSLLIQNLTKEDSGTYTLQ 75 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC-----ceEEEccCCchhcEEEEEE
Confidence 789999999887777799999975322110 0 011 1122222 3999999999999999999
Q ss_pred EeeCCCCc-eeEEEEE
Q psy15734 255 AVNALGET-DGFIKVY 269 (314)
Q Consensus 255 a~n~~g~~-~~~~~l~ 269 (314)
+....+.. ...+.|.
T Consensus 76 v~~~~~~~~~~~~~l~ 91 (92)
T cd05741 76 IISTNGVTENAKFFLR 91 (92)
T ss_pred EEcCCCcEEEEEEEEE
Confidence 99876433 4455444
No 268
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.74 E-value=1.4e-07 Score=66.30 Aligned_cols=88 Identities=16% Similarity=0.182 Sum_probs=53.9
Q ss_pred CCcceeecCccEEEEEEEeecC----CceeEEecCCCe-----eee----------cCCcee--eeEeeCCeeeEEEEEE
Q psy15734 182 NQLEGAFVSQTVELHCHTEAFP----ASLNYWTNEKGD-----MII----------TGDDYE--DSRLINGYSCHMTLKI 240 (314)
Q Consensus 182 ~~~~~v~~g~~~~l~C~~~g~p----~p~~~W~~~~~~-----~~~----------~~~~~~--~~~~~~~~~~~s~L~i 240 (314)
|....+.+|++++|.|...... ...+.|++.... .+. ...++. +....+......+|+|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 4556788999999999886543 246889864320 111 011111 1111111112468999
Q ss_pred eecCCCCCeEEEEEEeeCCCCc--eeEEEEE
Q psy15734 241 RSILSHQFGSYRCVAVNALGET--DGFIKVY 269 (314)
Q Consensus 241 ~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~ 269 (314)
.+++.+|+|.|.|.+.|..... ...+.|.
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 115 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPDIVGKPGEIRLR 115 (116)
T ss_pred eeCCcccCEEEEEEEEeCCCCCCCccEEEEe
Confidence 9999999999999999876542 2345544
No 269
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.73 E-value=7.4e-08 Score=65.61 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=51.8
Q ss_pred EEEcCCcEEEEEEecCC--CceEEEEEEcCce-e---EEEeeeee-eecCcCEEEEeCCceeEEEEEeeecCCCCeEEEE
Q psy15734 32 TATVGKEALMACVVENL--REYKVAWVKMITQ-T---ILSIHHKV-VTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMC 104 (314)
Q Consensus 32 ~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~~-~---~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 104 (314)
.+.+|++++|.|..... ....+.||+.... . +....... .....|+....+. ....|.|.+++.+|+|.|.|
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~-~~~~L~I~~~~~~Dsg~Y~C 80 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSG-NTASLTISGAQTEDEADYYC 80 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccC-CEEEEEECCCChhhCEEEEE
Confidence 57899999999998664 4567999986531 1 22111110 1113466665544 45689999999999999999
Q ss_pred EEec
Q psy15734 105 QINT 108 (314)
Q Consensus 105 ~~~~ 108 (314)
.+.+
T Consensus 81 ~~~~ 84 (98)
T cd04984 81 QVWD 84 (98)
T ss_pred EEcc
Confidence 9853
No 270
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.73 E-value=7.3e-08 Score=62.80 Aligned_cols=76 Identities=16% Similarity=0.139 Sum_probs=52.7
Q ss_pred CcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734 183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET 262 (314)
Q Consensus 183 ~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~ 262 (314)
....+..|+++.|.|...+. .+.+.|++++..+ ....++ ..... -|.|.+++.+|+|.|.|.+. +.|-.
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l-~~~~r~--~~~~~------GLlI~~~~~~dsG~Y~C~s~-E~gf~ 72 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPL-NAQFSY--RVGTD------GLLILVTSPEHSGTYRCYSE-EEGFQ 72 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCccc-CCCcce--EEeCC------CCEEEECCHhhCEEEEEEEe-cCCCe
Confidence 34678999999999999875 6699999975543 222222 22222 57799999999999999986 44544
Q ss_pred eeEEEEE
Q psy15734 263 DGFIKVY 269 (314)
Q Consensus 263 ~~~~~l~ 269 (314)
..-+.+.
T Consensus 73 ~~~~~y~ 79 (85)
T cd05872 73 QLVASYS 79 (85)
T ss_pred EEEEEEE
Confidence 4333333
No 271
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.73 E-value=2e-07 Score=63.61 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=30.4
Q ss_pred EEEEEeecCCCCCeEEEEEEee-CCCCceeEEEEEE
Q psy15734 236 MTLKIRSILSHQFGSYRCVAVN-ALGETDGFIKVYV 270 (314)
Q Consensus 236 s~L~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~V 270 (314)
.+|.|.+++.+|+|.|.|.+.+ +.|..+..+.|.|
T Consensus 64 ~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 64 GALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred eEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence 4899999999999999999998 6676677777776
No 272
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.72 E-value=1.1e-07 Score=63.68 Aligned_cols=74 Identities=9% Similarity=0.141 Sum_probs=50.1
Q ss_pred CCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734 21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG 100 (314)
Q Consensus 21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 100 (314)
+|.+...+. ..|.+|++|+|.|... .+...+.|++++.... . . + .........+.|.+++.+|+|
T Consensus 2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~-~--------~-~---~~~~~~~~~f~i~~v~~~~~G 66 (91)
T cd05751 2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFA-V--------K-K---PPEPQNKAKFFIPSMKREHAG 66 (91)
T ss_pred CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCcc-c--------c-c---cCCCceeEEEEccCCChhHCE
Confidence 355555554 4688999999999885 4567889999553211 0 0 0 001112237999999999999
Q ss_pred EEEEEEecC
Q psy15734 101 WYMCQINTV 109 (314)
Q Consensus 101 ~Y~C~~~~~ 109 (314)
.|+|.+.+.
T Consensus 67 ~Y~C~~~~~ 75 (91)
T cd05751 67 RYRCYYRSG 75 (91)
T ss_pred EEEEEEECC
Confidence 999999653
No 273
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.70 E-value=5.4e-07 Score=60.39 Aligned_cols=85 Identities=24% Similarity=0.345 Sum_probs=55.3
Q ss_pred CcEEEEEEecC-CCceEEEEEEcCc---eeEEEee---eeeee--cCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEe
Q psy15734 37 KEALMACVVEN-LREYKVAWVKMIT---QTILSIH---HKVVT--QNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQIN 107 (314)
Q Consensus 37 ~~~~l~C~~~~-~~~~~v~W~~~~~---~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 107 (314)
++++|.|.... ....+|.|.|... ..+.... ...+. -.+|+.+........+|.|.|++.+|+|.|.|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 47899999864 3457899998643 2232211 11111 12466655433345689999999999999999997
Q ss_pred cCCCcceeEEEEEE
Q psy15734 108 TVPMTSQKGYLQVV 121 (314)
Q Consensus 108 ~~~~~~~~~~l~v~ 121 (314)
..+..+....+.|.
T Consensus 81 t~P~g~~~~~i~~~ 94 (96)
T cd05889 81 TYPQGSWEKVIEVV 94 (96)
T ss_pred eCCCCCeEEEEEEE
Confidence 76666666666654
No 274
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.70 E-value=3.3e-07 Score=63.20 Aligned_cols=38 Identities=18% Similarity=0.354 Sum_probs=33.6
Q ss_pred EEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEe
Q psy15734 235 HMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNL 272 (314)
Q Consensus 235 ~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 272 (314)
..+|.|.+++.+|+|.|.|.+.......+..+.|.|..
T Consensus 71 ~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 71 NASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred eEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 45999999999999999999999777778888888864
No 275
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.68 E-value=8.2e-08 Score=66.42 Aligned_cols=77 Identities=16% Similarity=0.282 Sum_probs=52.8
Q ss_pred EEcCCCcceeecCccEEEEEEEeecC-CceeEEecCCC----eeeecC---------CceeeeEeeCCeeeEEEEEEeec
Q psy15734 178 LTIPNQLEGAFVSQTVELHCHTEAFP-ASLNYWTNEKG----DMIITG---------DDYEDSRLINGYSCHMTLKIRSI 243 (314)
Q Consensus 178 ~~~~~~~~~v~~g~~~~l~C~~~g~p-~p~~~W~~~~~----~~~~~~---------~~~~~~~~~~~~~~~s~L~i~~~ 243 (314)
+...|....+.+|++++|.|.+.+.. ...+.|++... ..+... .++.. ... .....|.|.++
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~--~~~--~~~~~L~I~~~ 78 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSG--SGS--GTDFTLTISRV 78 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEE--ecc--CCEEEEEECCC
Confidence 45566777899999999999998765 67889997531 111110 11211 111 12357999999
Q ss_pred CCCCCeEEEEEEeeC
Q psy15734 244 LSHQFGSYRCVAVNA 258 (314)
Q Consensus 244 ~~~d~G~Y~C~a~n~ 258 (314)
+.+|+|.|.|.+.+.
T Consensus 79 ~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 79 EPEDAAVYYCQQYGT 93 (106)
T ss_pred ChHHCEEEEEEEeCC
Confidence 999999999998653
No 276
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.67 E-value=1.6e-07 Score=61.49 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=46.7
Q ss_pred EEEEEEEee-cCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734 193 VELHCHTEA-FPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET 262 (314)
Q Consensus 193 ~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~ 262 (314)
+.|.|.+.+ .|.+.+.|++++.. +............+.|...+.|.+.....+|.+.|+|+|.|.....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~-l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKE-LKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEE-ccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 689999976 58899999997543 3222211111122236677788887777777889999999977543
No 277
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.67 E-value=9.5e-08 Score=67.32 Aligned_cols=77 Identities=18% Similarity=0.338 Sum_probs=52.4
Q ss_pred cCCCcceeecCccEEEEEEEee--cCCceeEEecCCCe----eee--------------cCCceeeeEeeCCeeeEEEEE
Q psy15734 180 IPNQLEGAFVSQTVELHCHTEA--FPASLNYWTNEKGD----MII--------------TGDDYEDSRLINGYSCHMTLK 239 (314)
Q Consensus 180 ~~~~~~~v~~g~~~~l~C~~~g--~p~p~~~W~~~~~~----~~~--------------~~~~~~~~~~~~~~~~~s~L~ 239 (314)
+.+....+.+|++++|.|.+.+ .+.+.+.|++.... .+. ...++.+.... ......|.
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~ 80 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDV--GKSTSTLT 80 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEEC--CCCEEEEE
Confidence 3456678899999999999987 67889999985311 111 01222221111 11245899
Q ss_pred EeecCCCCCeEEEEEEeeC
Q psy15734 240 IRSILSHQFGSYRCVAVNA 258 (314)
Q Consensus 240 i~~~~~~d~G~Y~C~a~n~ 258 (314)
|.+++.+|+|.|.|.+...
T Consensus 81 I~~~~~~Dsg~Y~C~~~~~ 99 (116)
T cd04982 81 IQNLEKEDSATYYCAYWES 99 (116)
T ss_pred EEECCHHHCEEEEEEEecC
Confidence 9999999999999998643
No 278
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.67 E-value=5.9e-07 Score=60.74 Aligned_cols=84 Identities=19% Similarity=0.329 Sum_probs=52.5
Q ss_pred CcEEEEEEecCC-C---ceEEEEEEcCc--e-eEEEeeee---ee--ecCcCEEEEeCCceeEEEEEeeecCCCCeEEEE
Q psy15734 37 KEALMACVVENL-R---EYKVAWVKMIT--Q-TILSIHHK---VV--TQNKRVSITFNDHRSWFLHLRDVQETDRGWYMC 104 (314)
Q Consensus 37 ~~~~l~C~~~~~-~---~~~v~W~~~~~--~-~~~~~~~~---~~--~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 104 (314)
.+++|+|..... + ..+|.|.+... . .+...... .. .-.+|+.+........+|.|.+++.+|+|.|.|
T Consensus 1 ~~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C 80 (99)
T cd05886 1 TDVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYIC 80 (99)
T ss_pred CcEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEE
Confidence 368999999642 2 24799988521 1 22111110 01 123566665444455689999999999999999
Q ss_pred EEecC--CCcceeEEEEE
Q psy15734 105 QINTV--PMTSQKGYLQV 120 (314)
Q Consensus 105 ~~~~~--~~~~~~~~l~v 120 (314)
.+.+. +..+..+.|.|
T Consensus 81 ~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 81 EFATFPTGNRESQLNLTV 98 (99)
T ss_pred EEEeCCCCCeEEEEEEEE
Confidence 99773 44455555655
No 279
>PHA03376 BARF1; Provisional
Probab=98.66 E-value=7.3e-07 Score=65.44 Aligned_cols=119 Identities=13% Similarity=0.058 Sum_probs=70.1
Q ss_pred cceeecCccEEEEEEEe---ecCCceeEEecCC----Ceeee-cCC-------ceeee--EeeCCeeeEEEEEEeecCCC
Q psy15734 184 LEGAFVSQTVELHCHTE---AFPASLNYWTNEK----GDMII-TGD-------DYEDS--RLINGYSCHMTLKIRSILSH 246 (314)
Q Consensus 184 ~~~v~~g~~~~l~C~~~---g~p~p~~~W~~~~----~~~~~-~~~-------~~~~~--~~~~~~~~~s~L~i~~~~~~ 246 (314)
.+.+..|+++.|+|.-+ ..+...|.|++++ ...+. .+. .++.. ...+. .+.+|.|.+++.+
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~--gnvsLvI~~l~lS 97 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA--NTFFLVVTAANIS 97 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecC--CeEEEEEEeeeec
Confidence 45678999999999775 2355688999942 11111 111 11111 10111 2458999999999
Q ss_pred CCeEEEEEEeeCCCCceeEEEEEEEecCCCeeEEEE----ccccccEeEEEEEeeccCCCccce
Q psy15734 247 QFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRK----MSRLHMGAYLCIASNGVVPSVSHR 306 (314)
Q Consensus 247 d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~----~~~~~~g~~~C~a~~~~~~~~~w~ 306 (314)
|.|.|+|............-.|.+..+ -.|.+.. ....+.-.++|...++|-|.++|-
T Consensus 98 DdGtY~C~fQkge~~~~k~ehLt~V~~--~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wl 159 (221)
T PHA03376 98 HDGNYLCRMKLGETEVTKQEHLSVVKP--LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWL 159 (221)
T ss_pred CCceEEEEEEcCCCceeeeeeeeeeec--ceEEEEeccccCCCCCeeEEEEecCCcCCchheec
Confidence 999999999876544433323322211 1122211 011233469999888999999993
No 280
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.66 E-value=4.1e-07 Score=61.50 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=32.0
Q ss_pred EEEEEeecCCCCCeEEEEEEee-CCCCceeEEEEEE
Q psy15734 236 MTLKIRSILSHQFGSYRCVAVN-ALGETDGFIKVYV 270 (314)
Q Consensus 236 s~L~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~V 270 (314)
.+|.|.+++.+|.|.|+|.+.+ +.|..+..+.|.|
T Consensus 63 aSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 63 GTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred ceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 3999999999999999999999 7888888888877
No 281
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.66 E-value=1e-06 Score=60.94 Aligned_cols=86 Identities=19% Similarity=0.314 Sum_probs=54.0
Q ss_pred CCcEEEEEEecCC-----------CceEEEEEEcC--------c-ee-EEEeeeeee---ecCcCEEEEeCC--ceeEEE
Q psy15734 36 GKEALMACVVENL-----------REYKVAWVKMI--------T-QT-ILSIHHKVV---TQNKRVSITFND--HRSWFL 89 (314)
Q Consensus 36 g~~~~l~C~~~~~-----------~~~~v~W~~~~--------~-~~-~~~~~~~~~---~~~~~~~~~~~~--~~~~~L 89 (314)
|.+++|+|.+.-. ..+.|.|++-. . .. +.+...... ...+|..+.... ....+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 6889999998622 24689999851 0 11 122221111 223577665432 234589
Q ss_pred EEeeecCCCCeEEEEEEecC-CCcceeEEEEEE
Q psy15734 90 HLRDVQETDRGWYMCQINTV-PMTSQKGYLQVV 121 (314)
Q Consensus 90 ~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~ 121 (314)
.|.+++.+|+|.|.|.+... ......+.|.|.
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 99999999999999999654 334455566664
No 282
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.64 E-value=1.6e-07 Score=64.95 Aligned_cols=73 Identities=19% Similarity=0.372 Sum_probs=50.6
Q ss_pred eeecCccEEEEEEEeec-CCceeEEecCCCe----eeec------------CCceeeeEeeCCeeeEEEEEEeecCCCCC
Q psy15734 186 GAFVSQTVELHCHTEAF-PASLNYWTNEKGD----MIIT------------GDDYEDSRLINGYSCHMTLKIRSILSHQF 248 (314)
Q Consensus 186 ~v~~g~~~~l~C~~~g~-p~p~~~W~~~~~~----~~~~------------~~~~~~~~~~~~~~~~s~L~i~~~~~~d~ 248 (314)
.+.+|++++|.|.+.+. +...+.|++.... .+.. ..++.+.. +......+|.|.+++.+|+
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~sL~I~~v~~~D~ 79 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTR--DSSKSSFTLTISSLQPEDS 79 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEE--eccCCEEEEEECCCCHHHC
Confidence 47789999999999987 7778999985431 1110 11111111 1111345899999999999
Q ss_pred eEEEEEEeeCCC
Q psy15734 249 GSYRCVAVNALG 260 (314)
Q Consensus 249 G~Y~C~a~n~~g 260 (314)
|.|.|.+.+..+
T Consensus 80 G~Y~C~v~~~~~ 91 (105)
T cd00099 80 AVYYCAVSLSGG 91 (105)
T ss_pred EEEEEEEecCCC
Confidence 999999998765
No 283
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.64 E-value=1.2e-06 Score=60.59 Aligned_cols=38 Identities=21% Similarity=0.411 Sum_probs=34.5
Q ss_pred EEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEe
Q psy15734 235 HMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNL 272 (314)
Q Consensus 235 ~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 272 (314)
..+|.|.+++.+|+|.|.|++.+........+.|.|..
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 35999999999999999999999998889999998864
No 284
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.61 E-value=2.3e-07 Score=63.76 Aligned_cols=75 Identities=23% Similarity=0.477 Sum_probs=50.5
Q ss_pred EEEcCCcEEEEEEecCCCceEEEEEEcCce---e---EEEeee--eee-e----cCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734 32 TATVGKEALMACVVENLREYKVAWVKMITQ---T---ILSIHH--KVV-T----QNKRVSITFNDHRSWFLHLRDVQETD 98 (314)
Q Consensus 32 ~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~---~---~~~~~~--~~~-~----~~~~~~~~~~~~~~~~L~i~~~~~~d 98 (314)
.+.+|++|+|.|.........+.||+.... . +..... ... . ...|+...... ..+.|.|.+++.+|
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~-~~~~L~I~~~~~sD 80 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSS-NSFVLTLKNFQKEN 80 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecC-CEEEEEECCCCHHH
Confidence 367899999999986655568999997532 1 221111 110 1 13455554433 55689999999999
Q ss_pred CeEEEEEEe
Q psy15734 99 RGWYMCQIN 107 (314)
Q Consensus 99 ~G~Y~C~~~ 107 (314)
+|.|.|.+.
T Consensus 81 sgtY~Ca~~ 89 (104)
T cd05720 81 EGYYFCSVA 89 (104)
T ss_pred CEEEEEEEc
Confidence 999999974
No 285
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.60 E-value=4.3e-07 Score=59.48 Aligned_cols=68 Identities=10% Similarity=0.130 Sum_probs=47.9
Q ss_pred EEEEEEEee-cCCceeEEecCCCeeeecCCceeeeEeeC--CeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734 193 VELHCHTEA-FPASLNYWTNEKGDMIITGDDYEDSRLIN--GYSCHMTLKIRSILSHQFGSYRCVAVNALGET 262 (314)
Q Consensus 193 ~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~ 262 (314)
+.|+|.+.| +|.+.|.|++++ ..+... ........+ .|...+.|.|.....+|...|+|+|.+.....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g-~~l~~~-~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGD-QELEGA-PTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEecCccCCCEeEEEECC-EECCCc-ceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence 689999987 488999999975 333222 222322322 36667888887777888889999999977543
No 286
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.59 E-value=2.1e-07 Score=65.27 Aligned_cols=81 Identities=22% Similarity=0.335 Sum_probs=54.0
Q ss_pred EEcCCCcceeecCccEEEEEEEe-ecCCceeEEecCCC---e-eee-cCCc---------e--eeeEeeCCeeeEEEEEE
Q psy15734 178 LTIPNQLEGAFVSQTVELHCHTE-AFPASLNYWTNEKG---D-MII-TGDD---------Y--EDSRLINGYSCHMTLKI 240 (314)
Q Consensus 178 ~~~~~~~~~v~~g~~~~l~C~~~-g~p~p~~~W~~~~~---~-~~~-~~~~---------~--~~~~~~~~~~~~s~L~i 240 (314)
+..++....+.+|+++.|.|... ......+.|++.+. . .+. .... + +.....+......+|.|
T Consensus 4 vt~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i 83 (114)
T PF07686_consen 4 VTQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTI 83 (114)
T ss_dssp EEEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEE
T ss_pred EEEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEE
Confidence 34456778899999999999999 55667889998433 1 111 0000 0 01111111122458999
Q ss_pred eecCCCCCeEEEEEEeeC
Q psy15734 241 RSILSHQFGSYRCVAVNA 258 (314)
Q Consensus 241 ~~~~~~d~G~Y~C~a~n~ 258 (314)
.+++.+|+|.|.|.+...
T Consensus 84 ~~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 84 KNLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp SSESGGGEEEEEEEEEES
T ss_pred CCCCcCcCEEEEEEEEEC
Confidence 999999999999999887
No 287
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.58 E-value=5e-07 Score=60.27 Aligned_cols=72 Identities=15% Similarity=0.262 Sum_probs=47.8
Q ss_pred CccEEEEEEE-eecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734 190 SQTVELHCHT-EAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE 261 (314)
Q Consensus 190 g~~~~l~C~~-~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~ 261 (314)
|+.+.+.|.+ .++|+|.+.|+.+++...............+.++..+.|.+..-...+...++|.|.+..-.
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 7899999976 56899999999986554111111111122223666778888765556667999999997654
No 288
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.58 E-value=1e-06 Score=60.70 Aligned_cols=87 Identities=18% Similarity=0.221 Sum_probs=53.9
Q ss_pred cCCcEEEEEEecCC-------CceEEEEEEcC----ceeEE-E--eeee---eeecCcCEEEEeCC--ceeEEEEEeeec
Q psy15734 35 VGKEALMACVVENL-------REYKVAWVKMI----TQTIL-S--IHHK---VVTQNKRVSITFND--HRSWFLHLRDVQ 95 (314)
Q Consensus 35 ~g~~~~l~C~~~~~-------~~~~v~W~~~~----~~~~~-~--~~~~---~~~~~~~~~~~~~~--~~~~~L~i~~~~ 95 (314)
.|++++|+|.+.-. ..+.+.|.+.. ..... . .... .....+|+.+..+. ....+|.|.+++
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~ 80 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR 80 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence 37899999996421 24799999862 11111 1 1111 11224567766533 235589999999
Q ss_pred CCCCeEEEEEEecC-CCcceeEEEEEE
Q psy15734 96 ETDRGWYMCQINTV-PMTSQKGYLQVV 121 (314)
Q Consensus 96 ~~d~G~Y~C~~~~~-~~~~~~~~l~v~ 121 (314)
.+|+|.|.|.+... ......+.|.|.
T Consensus 81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 81 YSDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred HHHCEEEEEEEEECCcccEEEEEEEEE
Confidence 99999999999653 234455556654
No 289
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.57 E-value=8.5e-07 Score=56.98 Aligned_cols=64 Identities=14% Similarity=0.240 Sum_probs=42.8
Q ss_pred cEEEEEEecC-CCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734 38 EALMACVVEN-LREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV 109 (314)
Q Consensus 38 ~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 109 (314)
.+.|.|...+ .|++.+.||+++ ..+..... ....+..+.. .+.|.|...+..|.+.|+|.+.|.
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~-~~l~~~~~-~~~~~~~~t~------~s~L~~~~~~~Ddg~~~~C~A~n~ 65 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDR-KELKGVIS-QQENGKTVSV------SNTIRFPVDRKDDGAILSCEASHP 65 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECC-EECCCCcc-cccCCceEEE------EEEEEEEeeeccCCcEEEEEEECh
Confidence 3789999954 688999999954 44422110 0111112222 237999999999999999999775
No 290
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.57 E-value=2.2e-07 Score=59.65 Aligned_cols=73 Identities=18% Similarity=0.370 Sum_probs=47.1
Q ss_pred CceecCCcceEEEcCCcEEEEEEecCCC-ceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734 22 PRFAEPVANVTATVGKEALMACVVENLR-EYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG 100 (314)
Q Consensus 22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 100 (314)
|.+...+.......+. +.|.|.+.+.+ .+.+.|+. ...... ...... ......|.|.++..+|.|
T Consensus 2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~-~~~~~~------~~~~~~------~~~~~~L~i~~v~~~~~g 67 (75)
T PF13927_consen 2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYD-SNPSFN------SNSRGS------SSSNSTLTISNVTRSDNG 67 (75)
T ss_dssp SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEET-EEEEEE------EEEEEE------EEEEEEEEESSCCGGGTE
T ss_pred CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEEe-cCCcee------eeeeec------cceeeEEEEccCCHHhCc
Confidence 6666666555444444 99999998866 88999991 111000 000000 011237999999999999
Q ss_pred EEEEEEec
Q psy15734 101 WYMCQINT 108 (314)
Q Consensus 101 ~Y~C~~~~ 108 (314)
.|+|.+.|
T Consensus 68 ~y~C~a~N 75 (75)
T PF13927_consen 68 TYTCIASN 75 (75)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEC
Confidence 99999864
No 291
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.56 E-value=6.6e-07 Score=61.90 Aligned_cols=77 Identities=16% Similarity=0.374 Sum_probs=50.1
Q ss_pred eEEEcCCcEEEEEEecCC-CceEEEEEEcCce----eEE---Eee-e--eee---ecCcCEEEEe-CCceeEEEEEeeec
Q psy15734 31 VTATVGKEALMACVVENL-REYKVAWVKMITQ----TIL---SIH-H--KVV---TQNKRVSITF-NDHRSWFLHLRDVQ 95 (314)
Q Consensus 31 ~~v~~g~~~~l~C~~~~~-~~~~v~W~~~~~~----~~~---~~~-~--~~~---~~~~~~~~~~-~~~~~~~L~i~~~~ 95 (314)
+.+.+|++++|.|.+... ....+.|||.... .+. ... . ... ....++.+.. .....+.|.|.+++
T Consensus 1 ~~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 80 (107)
T cd07700 1 ILVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK 80 (107)
T ss_pred CEEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence 358899999999998653 4458999997532 111 100 0 000 1134555432 23345689999999
Q ss_pred CCCCeEEEEEEe
Q psy15734 96 ETDRGWYMCQIN 107 (314)
Q Consensus 96 ~~d~G~Y~C~~~ 107 (314)
++|+|.|.|...
T Consensus 81 ~~Dsg~YyCa~~ 92 (107)
T cd07700 81 PEDSGTYFCMTV 92 (107)
T ss_pred HHHCEEEEEeEc
Confidence 999999999974
No 292
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.55 E-value=9.4e-07 Score=56.84 Aligned_cols=75 Identities=12% Similarity=0.131 Sum_probs=52.8
Q ss_pred ceeecCccEEEEEEEeecCC--ceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734 185 EGAFVSQTVELHCHTEAFPA--SLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET 262 (314)
Q Consensus 185 ~~v~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~ 262 (314)
..+..|++++|+|.....+. +.+.|...+++..... ..... +|.+.+++..|+|.++|.+.......
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~------~~~~k-----tL~~~qv~~qdSG~WtC~V~~~~k~~ 77 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQIL------NQDKK-----TLNLVQLGPNDSGTWDCIVSVNSSEK 77 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccceec------cCCcc-----EEEeceeCcccCCEEEEEEEECceEE
Confidence 45788999999999966444 5999998755433111 01222 99999999999999999998664444
Q ss_pred eeEEEEEE
Q psy15734 263 DGFIKVYV 270 (314)
Q Consensus 263 ~~~~~l~V 270 (314)
...+.+.|
T Consensus 78 ~~~~~V~V 85 (88)
T cd07694 78 TLKLDIKV 85 (88)
T ss_pred EEEeeEEE
Confidence 44554444
No 293
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.55 E-value=1.1e-06 Score=57.52 Aligned_cols=66 Identities=8% Similarity=0.154 Sum_probs=40.6
Q ss_pred cEEEEEEecC-CCceEEEEEEcCceeEEEeee-eeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734 38 EALMACVVEN-LREYKVAWVKMITQTILSIHH-KVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV 109 (314)
Q Consensus 38 ~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 109 (314)
.+.|.|.+.+ .|.+.+.|+++ +..+..... .....++.... ....|.|......|.|.|+|.+.+.
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~-g~~l~~~~~~~~~~~~~~~~~-----~~s~L~i~~~~~~~~~~y~C~a~n~ 68 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRD-GEVLDGATYSKELLKDGKRET-----TVSTLPITPSDHDTGRTFTCRARNE 68 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEEC-CEEccCceeeeeEecCCCeEE-----EEEEEEEeCceecCCCEEEEEEcCc
Confidence 3689999987 57789999994 443321110 00111111110 1126888888888899999999764
No 294
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.52 E-value=3.8e-07 Score=62.08 Aligned_cols=69 Identities=19% Similarity=0.334 Sum_probs=47.1
Q ss_pred eeecCccEEEEEEEeec--CCceeEEecCCCe----eeec---------CCceeeeEeeCCeeeEEEEEEeecCCCCCeE
Q psy15734 186 GAFVSQTVELHCHTEAF--PASLNYWTNEKGD----MIIT---------GDDYEDSRLINGYSCHMTLKIRSILSHQFGS 250 (314)
Q Consensus 186 ~v~~g~~~~l~C~~~g~--p~p~~~W~~~~~~----~~~~---------~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~ 250 (314)
.+.+|++++|.|...+. ....+.|++.... .+.. ..++... .+. ....|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~--~~~--~~~~L~I~~~~~~Dsg~ 77 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGS--KSG--NTASLTISGAQTEDEAD 77 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEE--ccC--CEEEEEECCCChhhCEE
Confidence 47899999999999775 5677999875431 1110 1122211 111 34589999999999999
Q ss_pred EEEEEeeC
Q psy15734 251 YRCVAVNA 258 (314)
Q Consensus 251 Y~C~a~n~ 258 (314)
|.|.+.+.
T Consensus 78 Y~C~~~~~ 85 (98)
T cd04984 78 YYCQVWDS 85 (98)
T ss_pred EEEEEccC
Confidence 99998753
No 295
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.52 E-value=1.1e-06 Score=61.82 Aligned_cols=81 Identities=20% Similarity=0.362 Sum_probs=54.0
Q ss_pred CCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-ee---EEEeee---ee---eecCcCEEEEeCC-ceeEEEEEee
Q psy15734 27 PVANVTATVGKEALMACVVENL--REYKVAWVKMIT-QT---ILSIHH---KV---VTQNKRVSITFND-HRSWFLHLRD 93 (314)
Q Consensus 27 ~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~---~~~~~~---~~---~~~~~~~~~~~~~-~~~~~L~i~~ 93 (314)
.|....+.+|++++|.|..... ....+.|||... .. +..... .. ....+|+.+..+. .....|.|.+
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 4567789999999999998543 246799999642 11 111110 00 0113466666543 2345799999
Q ss_pred ecCCCCeEEEEEEe
Q psy15734 94 VQETDRGWYMCQIN 107 (314)
Q Consensus 94 ~~~~d~G~Y~C~~~ 107 (314)
++.+|+|.|.|.+.
T Consensus 83 ~~~~Dsa~YyCa~~ 96 (117)
T cd04981 83 LTPEDTAVYYCARG 96 (117)
T ss_pred CCHHHCEEEEEEEE
Confidence 99999999999985
No 296
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.51 E-value=6.9e-07 Score=58.37 Aligned_cols=69 Identities=20% Similarity=0.397 Sum_probs=45.4
Q ss_pred cEEEEEEecCCCc--eEEEEEEcCc-e---eEEEee--eeee---ecCcCEEEEeCC-ceeEEEEEeeecCCCCeEEEEE
Q psy15734 38 EALMACVVENLRE--YKVAWVKMIT-Q---TILSIH--HKVV---TQNKRVSITFND-HRSWFLHLRDVQETDRGWYMCQ 105 (314)
Q Consensus 38 ~~~l~C~~~~~~~--~~v~W~~~~~-~---~~~~~~--~~~~---~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~ 105 (314)
+++|+|.+..... ..+.|++... . .+.... .... ....|+.+.... ...++|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 4789999866443 4899999642 1 111111 1111 224577766553 5567899999999999999996
Q ss_pred E
Q psy15734 106 I 106 (314)
Q Consensus 106 ~ 106 (314)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 4
No 297
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.51 E-value=5.5e-07 Score=63.38 Aligned_cols=78 Identities=17% Similarity=0.247 Sum_probs=52.2
Q ss_pred EcCCCcceeecCccEEEEEEEeec-CCceeEEecCCCe---e-eec---------CCceeeeEeeCCeeeEEEEEEeecC
Q psy15734 179 TIPNQLEGAFVSQTVELHCHTEAF-PASLNYWTNEKGD---M-IIT---------GDDYEDSRLINGYSCHMTLKIRSIL 244 (314)
Q Consensus 179 ~~~~~~~~v~~g~~~~l~C~~~g~-p~p~~~W~~~~~~---~-~~~---------~~~~~~~~~~~~~~~~s~L~i~~~~ 244 (314)
.+.+....+..|++++|.|..... ....+.|++.... . +.. ..++.+.. +......+|.|.+++
T Consensus 3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~--~~~~~~~sL~I~~~~ 80 (116)
T cd07706 3 TQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNF--QKAQKSISLTISALQ 80 (116)
T ss_pred EEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEE--eccCCEEEEEECCCC
Confidence 455667789999999999998764 4567889984321 1 111 11222211 111124589999999
Q ss_pred CCCCeEEEEEEeeC
Q psy15734 245 SHQFGSYRCVAVNA 258 (314)
Q Consensus 245 ~~d~G~Y~C~a~n~ 258 (314)
.+|+|.|.|.+...
T Consensus 81 ~~Dsg~Y~C~~~~~ 94 (116)
T cd07706 81 LEDSAKYFCALSTL 94 (116)
T ss_pred HHHCEEEEEEEECC
Confidence 99999999999853
No 298
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.51 E-value=1e-06 Score=59.26 Aligned_cols=74 Identities=14% Similarity=0.088 Sum_probs=48.1
Q ss_pred CceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeE
Q psy15734 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGW 101 (314)
Q Consensus 22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 101 (314)
|.+..++ ...|.+|++|+|.|.... ....+.|+|++...-... .......+ ....+.|.+++.+|+|.
T Consensus 2 P~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~--~~~~~~~~--------~~a~f~I~~~~~~~~G~ 69 (94)
T cd05711 2 PFLSAHP-SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLH--LYEKHHGG--------FQASFPLGPVTPAHAGT 69 (94)
T ss_pred CEEEecC-CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCcee--cccccCCe--------EEEEEEecCCCcccCEE
Confidence 5554544 445889999999998865 456899999654311000 00000011 12268999999999999
Q ss_pred EEEEEe
Q psy15734 102 YMCQIN 107 (314)
Q Consensus 102 Y~C~~~ 107 (314)
|+|...
T Consensus 70 Y~C~~~ 75 (94)
T cd05711 70 YRCYGS 75 (94)
T ss_pred EEEEEE
Confidence 999974
No 299
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.50 E-value=1.6e-06 Score=58.76 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=29.9
Q ss_pred EEEEEeecCCCCCeEEEEEEee-CCCCceeEEEEEE
Q psy15734 236 MTLKIRSILSHQFGSYRCVAVN-ALGETDGFIKVYV 270 (314)
Q Consensus 236 s~L~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~V 270 (314)
++|.|.+++.+|+|.|.|.+.. +.|.....+.|+|
T Consensus 61 ~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 61 TSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred cEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence 4899999999999999999874 6677777777776
No 300
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.50 E-value=1.4e-06 Score=58.58 Aligned_cols=81 Identities=11% Similarity=0.112 Sum_probs=51.3
Q ss_pred EEcCCCcceeecCccEEEEEEEee-cCCce--eEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734 178 LTIPNQLEGAFVSQTVELHCHTEA-FPASL--NYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV 254 (314)
Q Consensus 178 ~~~~~~~~~v~~g~~~~l~C~~~g-~p~p~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~ 254 (314)
+.+.+....+.+|+.++|+|.+.| .|.+. +.|++++.. +. ...+.. .........++|.+..-..+|.-.|+|+
T Consensus 4 V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~-l~-~~~~~~-~~~~~~~~~stlt~~~~r~D~g~~~sC~ 80 (100)
T cd05755 4 VELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNET-LS-RQPFGD-NTKSPVNAPATITITVDREDHGANFSCE 80 (100)
T ss_pred EEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEE-cc-cceecc-ccCCCceeEEEEEEecchhhCCcEEEEE
Confidence 444555566789999999999976 67776 689996433 32 222111 0111234456788765544444499999
Q ss_pred EeeCCCC
Q psy15734 255 AVNALGE 261 (314)
Q Consensus 255 a~n~~g~ 261 (314)
|.+..+.
T Consensus 81 A~l~l~~ 87 (100)
T cd05755 81 TELDLRP 87 (100)
T ss_pred EEeccCc
Confidence 9987654
No 301
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.50 E-value=1e-06 Score=59.95 Aligned_cols=73 Identities=14% Similarity=0.141 Sum_probs=49.0
Q ss_pred ceeecCccEEEEEEEee-cCCceeEEecCCCee---ee-c--------CCceeeeEeeCCeeeEEEEEEeecCCCCCeEE
Q psy15734 185 EGAFVSQTVELHCHTEA-FPASLNYWTNEKGDM---II-T--------GDDYEDSRLINGYSCHMTLKIRSILSHQFGSY 251 (314)
Q Consensus 185 ~~v~~g~~~~l~C~~~g-~p~p~~~W~~~~~~~---~~-~--------~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y 251 (314)
+.+.+|++++|.|.... .+...+.|++..... .+ . ..++.+ ..+.......|.|.+++.+|+|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~--~~~~~~~~~~L~I~~v~~~DsG~Y 79 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSL--TDDPDNGVFTVTLNQLRKEDAGWY 79 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEE--EecCCCCEEEEEEcCCCHHHCEEE
Confidence 35789999999999875 356678899864321 11 0 112222 111122346899999999999999
Q ss_pred EEEEeeCC
Q psy15734 252 RCVAVNAL 259 (314)
Q Consensus 252 ~C~a~n~~ 259 (314)
.|.+....
T Consensus 80 ~C~~~~~~ 87 (98)
T cd05716 80 WCGVGDDG 87 (98)
T ss_pred EEEcccCC
Confidence 99987754
No 302
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.49 E-value=1e-06 Score=59.26 Aligned_cols=83 Identities=14% Similarity=0.196 Sum_probs=55.7
Q ss_pred EcCCCcceeecCccEEEEEEEeec-CCc--eeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734 179 TIPNQLEGAFVSQTVELHCHTEAF-PAS--LNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA 255 (314)
Q Consensus 179 ~~~~~~~~v~~g~~~~l~C~~~g~-p~p--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a 255 (314)
..+|....+..|+.++|.|.+.|+ -++ .+.|+++++..............++.|...+.|.+..-...+.-.|+|.+
T Consensus 3 ~~pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V 82 (96)
T cd07696 3 LLPPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKV 82 (96)
T ss_pred ecCcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEE
Confidence 346666778889999999999998 333 56899986543322211111222333777888888876655566899999
Q ss_pred eeCCCC
Q psy15734 256 VNALGE 261 (314)
Q Consensus 256 ~n~~g~ 261 (314)
......
T Consensus 83 ~H~~l~ 88 (96)
T cd07696 83 THPDLP 88 (96)
T ss_pred ECCCCC
Confidence 887543
No 303
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.49 E-value=2.5e-06 Score=57.27 Aligned_cols=68 Identities=18% Similarity=0.230 Sum_probs=43.8
Q ss_pred CccEEEEEEEeecCCc--eeEEecCCCeeeecCCceeeeEeeC-CeeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734 190 SQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDDYEDSRLIN-GYSCHMTLKIRSILSHQFGSYRCVAVNALG 260 (314)
Q Consensus 190 g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g 260 (314)
++.++|.|.+.|+.++ .+.|++++................+ .|...+.|.|... |.+.|+|.+.+...
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~---~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPE---DKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCC---CCCEEEEEEEeCCC
Confidence 7889999999996444 7789997432221111111222233 3666777777654 77899999988654
No 304
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.48 E-value=1.5e-06 Score=58.26 Aligned_cols=79 Identities=25% Similarity=0.370 Sum_probs=50.9
Q ss_pred ccEEEEEEEeecC-CceeEEecCCCe---eee-cC--------Cce--eeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734 191 QTVELHCHTEAFP-ASLNYWTNEKGD---MII-TG--------DDY--EDSRLINGYSCHMTLKIRSILSHQFGSYRCVA 255 (314)
Q Consensus 191 ~~~~l~C~~~g~p-~p~~~W~~~~~~---~~~-~~--------~~~--~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a 255 (314)
.+++|.|.....+ ...+.|.|..+. .+. -. ..+ ++... +.....++|.|.+++.+|+|.|+|++
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~-~~~~~d~sl~i~nv~~~D~G~Y~C~v 79 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFK-NYSLLDATIMLENVGFSDIGVYICKA 79 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEc-CCCCCccEEEEeCCCccccEEEEEEE
Confidence 3689999987533 347789875321 111 00 011 11111 11122459999999999999999997
Q ss_pred ee-CCCCceeEEEEEE
Q psy15734 256 VN-ALGETDGFIKVYV 270 (314)
Q Consensus 256 ~n-~~g~~~~~~~l~V 270 (314)
.+ +.|..+.+..|+|
T Consensus 80 ~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 80 VTFPLGNTQSSTTVTV 95 (96)
T ss_pred EeCCCCCeeEEEEEEE
Confidence 54 7788888888877
No 305
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.48 E-value=6.6e-07 Score=58.47 Aligned_cols=68 Identities=18% Similarity=0.164 Sum_probs=46.4
Q ss_pred EEEEEEEee-cCCceeEEecCCCeeeecCCceeeeE-eeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734 193 VELHCHTEA-FPASLNYWTNEKGDMIITGDDYEDSR-LINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE 261 (314)
Q Consensus 193 ~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~ 261 (314)
++|.|.+.| +|...+.|++++. .+.......... .+..|...+.|.+......|...|+|+|.+..-.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~-~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDK-EIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCE-ECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 689999987 6778889999744 333222111112 2223777889999876677777999999987644
No 306
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.46 E-value=1e-06 Score=59.24 Aligned_cols=74 Identities=16% Similarity=0.258 Sum_probs=48.5
Q ss_pred CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734 176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA 255 (314)
Q Consensus 176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a 255 (314)
|.+...+ ...|..|++|+|.|.... +...+.|+|++....... .......+ ....+.|.+++.+|+|.|.|..
T Consensus 2 P~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~---~~~~~~~~--~~a~f~I~~~~~~~~G~Y~C~~ 74 (94)
T cd05711 2 PFLSAHP-SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLH---LYEKHHGG--FQASFPLGPVTPAHAGTYRCYG 74 (94)
T ss_pred CEEEecC-CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCcee---cccccCCe--EEEEEEecCCCcccCEEEEEEE
Confidence 4444444 345789999999998865 556789999754321100 00000111 2348999999999999999997
Q ss_pred e
Q psy15734 256 V 256 (314)
Q Consensus 256 ~ 256 (314)
.
T Consensus 75 ~ 75 (94)
T cd05711 75 S 75 (94)
T ss_pred E
Confidence 5
No 307
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.45 E-value=1.4e-06 Score=58.16 Aligned_cols=68 Identities=21% Similarity=0.367 Sum_probs=45.7
Q ss_pred eEEEcCCcEEEEEEe-c----CCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEE
Q psy15734 31 VTATVGKEALMACVV-E----NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQ 105 (314)
Q Consensus 31 ~~v~~g~~~~l~C~~-~----~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 105 (314)
..+.+|.+..|.|.- . ....+.+.|||++ ..+.. .+.++....+ ...|.|.+++.+|+|.|+|.
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~-~~l~~-------~~~~~~~~~~---~~~L~I~~v~~~D~G~YtC~ 73 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDS-VLLDK-------DNEKFYSLKG---STYLHIIDVSLNDSGYYTCK 73 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCC-EECcC-------CCcceEecCC---CCEEEEEEcChhhCEEEEEE
Confidence 457789999999974 2 2356799999954 43211 1112222111 12699999999999999999
Q ss_pred EecC
Q psy15734 106 INTV 109 (314)
Q Consensus 106 ~~~~ 109 (314)
+.+.
T Consensus 74 ~~~~ 77 (95)
T cd05897 74 LQFT 77 (95)
T ss_pred EEEe
Confidence 9654
No 308
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.40 E-value=1.5e-06 Score=60.19 Aligned_cols=70 Identities=19% Similarity=0.358 Sum_probs=45.7
Q ss_pred eeecCccEEEEEEEeecC-CceeEEecCCCe---e-----e-ec------------CCceeeeEeeCCeeeEEEEEEeec
Q psy15734 186 GAFVSQTVELHCHTEAFP-ASLNYWTNEKGD---M-----I-IT------------GDDYEDSRLINGYSCHMTLKIRSI 243 (314)
Q Consensus 186 ~v~~g~~~~l~C~~~g~p-~p~~~W~~~~~~---~-----~-~~------------~~~~~~~~~~~~~~~~s~L~i~~~ 243 (314)
.+.+|++++|.|.+.+.. ...+.|++.... . + .. ..++......+ .....|+|.++
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~--~~~~~L~I~~~ 79 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSD--SSRYRLHINRV 79 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECC--CCEEEEEECCC
Confidence 478999999999997643 457899985432 0 0 00 11221111111 12357999999
Q ss_pred CCCCCeEEEEEEee
Q psy15734 244 LSHQFGSYRCVAVN 257 (314)
Q Consensus 244 ~~~d~G~Y~C~a~n 257 (314)
+.+|+|.|.|...+
T Consensus 80 ~~~Dsg~YyCa~~~ 93 (107)
T cd07700 80 KPEDSGTYFCMTVG 93 (107)
T ss_pred CHHHCEEEEEeEcC
Confidence 99999999999853
No 309
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.38 E-value=4.7e-06 Score=61.64 Aligned_cols=90 Identities=16% Similarity=0.195 Sum_probs=59.9
Q ss_pred CcceeecCccEEEEEEEe-ecCCceeEEecCCCeeeecC-Cce--------eeeEeeCCeeeEEEEEEeecCCCCCeEEE
Q psy15734 183 QLEGAFVSQTVELHCHTE-AFPASLNYWTNEKGDMIITG-DDY--------EDSRLINGYSCHMTLKIRSILSHQFGSYR 252 (314)
Q Consensus 183 ~~~~v~~g~~~~l~C~~~-g~p~p~~~W~~~~~~~~~~~-~~~--------~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~ 252 (314)
..+.|.+|+++.|.|.-. +...+.+.|+|.++....-. ... ++..... ....+.|+|.+++.+|+|.|.
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~-s~~~StItIknVt~sDeGcY~ 101 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSK-SFNESTILIKNVSLKDNGCYT 101 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEecc-CCCcceEEEEeCChhhCeEEE
Confidence 345789999999999984 66678899999643222110 000 1110000 012469999999999999999
Q ss_pred EEEee-CCC-CceeEEEEEEEec
Q psy15734 253 CVAVN-ALG-ETDGFIKVYVNLV 273 (314)
Q Consensus 253 C~a~n-~~g-~~~~~~~l~V~~~ 273 (314)
|...- +.| ..+...-|.|...
T Consensus 102 C~F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 102 CIFNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EEEEecCCCCCceeEEEEEEEch
Confidence 99876 445 6677788888654
No 310
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=98.36 E-value=0.00096 Score=55.09 Aligned_cols=124 Identities=16% Similarity=0.060 Sum_probs=75.5
Q ss_pred CcceeecCccEEEEEEEee---cCCceeEEecCCCee---e-------------ecCCceeeeEeeC--CeeeEEEEEEe
Q psy15734 183 QLEGAFVSQTVELHCHTEA---FPASLNYWTNEKGDM---I-------------ITGDDYEDSRLIN--GYSCHMTLKIR 241 (314)
Q Consensus 183 ~~~~v~~g~~~~l~C~~~g---~p~p~~~W~~~~~~~---~-------------~~~~~~~~~~~~~--~~~~~s~L~i~ 241 (314)
..+.+..|..+.|.|..+. ..-....|...+=+. . .....+.++...+ .....|+|+|.
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 4456778999999998865 334566787543110 0 0112233332211 12246799999
Q ss_pred ecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCeeEEEEccc-cccEeEEEEEeec-c-CCCccceEEEE
Q psy15734 242 SILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSR-LHMGAYLCIASNG-V-VPSVSHRIMVT 310 (314)
Q Consensus 242 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~-~~~g~~~C~a~~~-~-~~~~~w~v~l~ 310 (314)
+++.+..|-|+|+|....-...+.--|.|... +....... .-.....|.+-.. . +++|.|++--.
T Consensus 352 ka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~----V~f~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV 419 (500)
T PHA02914 352 KAHINNAGCYEAQAFMGKFKEECRHCFKVADH----VFFKWNTEGDNETKVACYAAQYDMQPFSILWKSNGV 419 (500)
T ss_pred eEEEEcCCceEEEEecCcchhhhhhheEeccE----EEEEEEeccCceEEEEEEEEecccCCceeEEEEccE
Confidence 99999999999999887655555555555422 33333333 2334589998776 4 45789987543
No 311
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.35 E-value=2.6e-06 Score=57.96 Aligned_cols=79 Identities=18% Similarity=0.187 Sum_probs=52.6
Q ss_pred CCCcceeecCccEEEEEEEeecCC--ceeEEecCCCeeeecCCc-eeeeEe-eCCeeeEEEEEEeecCCCCCeEEEEEEe
Q psy15734 181 PNQLEGAFVSQTVELHCHTEAFPA--SLNYWTNEKGDMIITGDD-YEDSRL-INGYSCHMTLKIRSILSHQFGSYRCVAV 256 (314)
Q Consensus 181 ~~~~~~v~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~-~~~~~~-~~~~~~~s~L~i~~~~~~d~G~Y~C~a~ 256 (314)
++.......++.++|.|.+.|..+ ..+.|++++... ..... ...... ++.|...+.|.+..-...+...|+|++.
T Consensus 8 ~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~ 86 (100)
T cd07699 8 PPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATV-SSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVT 86 (100)
T ss_pred CCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEEC-cccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEE
Confidence 445555667788999999999543 477899975433 22111 111222 3338888899888777767789999998
Q ss_pred eCCC
Q psy15734 257 NALG 260 (314)
Q Consensus 257 n~~g 260 (314)
...-
T Consensus 87 H~~l 90 (100)
T cd07699 87 HEGL 90 (100)
T ss_pred ecCC
Confidence 8653
No 312
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=98.34 E-value=3.5e-06 Score=56.40 Aligned_cols=82 Identities=11% Similarity=0.090 Sum_probs=51.6
Q ss_pred CCCcceeecCccEEEEEEEeecCC--ceeEEecCCCeeeecCCce-eeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEee
Q psy15734 181 PNQLEGAFVSQTVELHCHTEAFPA--SLNYWTNEKGDMIITGDDY-EDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN 257 (314)
Q Consensus 181 ~~~~~~v~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n 257 (314)
++.......+..+.|.|.+.|+-+ ..+.|++++.......... .....++.|...+.|.|..-...+...|+|.+.+
T Consensus 5 ~ps~~~~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H 84 (94)
T cd05847 5 HSSCCDTGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTH 84 (94)
T ss_pred CcChHHcCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEE
Confidence 333343345667999999999544 4668999744321111111 1112233477888898887666677899999998
Q ss_pred CCCCc
Q psy15734 258 ALGET 262 (314)
Q Consensus 258 ~~g~~ 262 (314)
.....
T Consensus 85 ~~~~~ 89 (94)
T cd05847 85 QGTTF 89 (94)
T ss_pred CCeee
Confidence 76543
No 313
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.33 E-value=4.1e-06 Score=53.71 Aligned_cols=66 Identities=15% Similarity=0.256 Sum_probs=44.4
Q ss_pred EEEEEEEeec-CC-ceeEEecCCCeeeecCCc-eeeeEeeC-CeeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734 193 VELHCHTEAF-PA-SLNYWTNEKGDMIITGDD-YEDSRLIN-GYSCHMTLKIRSILSHQFGSYRCVAVNAL 259 (314)
Q Consensus 193 ~~l~C~~~g~-p~-p~~~W~~~~~~~~~~~~~-~~~~~~~~-~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~ 259 (314)
++|.|.+.|+ |+ ..+.|++++ ..+..... .......+ .|...+.|.|......+...|+|+|.+..
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g-~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNG-QEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECC-EECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 6899999996 44 478999974 33222111 11122233 48888899988777777789999998764
No 314
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.27 E-value=4.4e-06 Score=52.50 Aligned_cols=66 Identities=23% Similarity=0.277 Sum_probs=45.6
Q ss_pred EEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734 193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNAL 259 (314)
Q Consensus 193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~ 259 (314)
+.|.|.+.+.+...+.|++++......... ........+.....|.|.++..+|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT-RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccE-EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 468999999888899999964332211110 111122224455689999999999999999998876
No 315
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.25 E-value=3e-05 Score=50.06 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=43.8
Q ss_pred cEEEEEEecC-CCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecCC--Ccce
Q psy15734 38 EALMACVVEN-LREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVP--MTSQ 114 (314)
Q Consensus 38 ~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~ 114 (314)
.+.|.|.+.+ .|...|.||+++ ..+.............+.. ..+|.|..-...|...|+|.+.+.. ....
T Consensus 1 ~~~L~C~s~gSkP~A~I~W~k~~-~~l~~~~~~~~~~~~~~t~------~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~ 73 (82)
T cd05883 1 EIELNCTAMASKPAATIRWFKGN-KELTGKSTVEETWSRMFTV------TSQLMLKVTKEDDGVPVICLVDHPAVKDLQT 73 (82)
T ss_pred CEEEEEEecCCCCCCEEEEEECC-EECcCcccceeccCCCcEE------EEEEEEECchhhCCCEEEEEEcCcccCCcee
Confidence 3689999976 588999999954 4332211000011111222 1268887666666668999997642 2233
Q ss_pred eEEEEEE
Q psy15734 115 KGYLQVV 121 (314)
Q Consensus 115 ~~~l~v~ 121 (314)
...|.|.
T Consensus 74 ~~~L~V~ 80 (82)
T cd05883 74 QRYLEVQ 80 (82)
T ss_pred eEEEEEE
Confidence 3445543
No 316
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.22 E-value=1e-05 Score=57.15 Aligned_cols=78 Identities=10% Similarity=-0.018 Sum_probs=49.1
Q ss_pred CCCcceeecCccEEEEEEEeecC------CceeEEecCCCee-----ee-cC------Cce--eeeEeeCCeeeEEEEEE
Q psy15734 181 PNQLEGAFVSQTVELHCHTEAFP------ASLNYWTNEKGDM-----II-TG------DDY--EDSRLINGYSCHMTLKI 240 (314)
Q Consensus 181 ~~~~~~v~~g~~~~l~C~~~g~p------~p~~~W~~~~~~~-----~~-~~------~~~--~~~~~~~~~~~~s~L~i 240 (314)
.|....+.+|++++|.|.....+ ...+.|++..... .. .. ..+ +.....+.......|.|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 34556889999999999875332 2457899864321 11 00 011 11111111223568999
Q ss_pred eecCCCCCeEEEEEEeeC
Q psy15734 241 RSILSHQFGSYRCVAVNA 258 (314)
Q Consensus 241 ~~~~~~d~G~Y~C~a~n~ 258 (314)
.+++.+|+|.|.|.+...
T Consensus 85 ~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 85 SDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccCChhhCeEEEEEEEcC
Confidence 999999999999988664
No 317
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.22 E-value=2.4e-05 Score=52.50 Aligned_cols=33 Identities=27% Similarity=0.478 Sum_probs=27.7
Q ss_pred EEEEEeecCCCCCeEEEEEEee-CCCCceeEEEE
Q psy15734 236 MTLKIRSILSHQFGSYRCVAVN-ALGETDGFIKV 268 (314)
Q Consensus 236 s~L~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l 268 (314)
.+|.|.+++.+|+|.|+|.+.. +.|..++.+.|
T Consensus 60 ~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~ 93 (96)
T cd05889 60 MSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV 93 (96)
T ss_pred cEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence 3999999999999999999977 46766777655
No 318
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.20 E-value=2.6e-05 Score=53.94 Aligned_cols=73 Identities=12% Similarity=0.200 Sum_probs=47.3
Q ss_pred eeecCccEEEEEEEeecCC--ceeEEecCCCeeeecCCceeeeE-eeC-CeeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734 186 GAFVSQTVELHCHTEAFPA--SLNYWTNEKGDMIITGDDYEDSR-LIN-GYSCHMTLKIRSILSHQFGSYRCVAVNALG 260 (314)
Q Consensus 186 ~v~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~~~~~~-~~~-~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g 260 (314)
....|+.++|.|.+.|+-+ ..+.|++++.. +..... .... .++ .|...+.|.+..-..++.-.|+|.+.+...
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~-~~~~~~-~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H~~l 93 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNE-LSAEQP-NITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQHRTL 93 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEE-Cccccc-ceeeCCCCCcEEEEEEEEEECccccccCceEEEEEeCCC
Confidence 3457888999999998544 47799997444 332211 2221 222 477788888886444443469999998653
No 319
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.19 E-value=1.2e-05 Score=55.29 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=20.3
Q ss_pred EEEEEEeecCCCCCeEEEEEEee
Q psy15734 235 HMTLKIRSILSHQFGSYRCVAVN 257 (314)
Q Consensus 235 ~s~L~i~~~~~~d~G~Y~C~a~n 257 (314)
...|.|.+++.+|+|.|.|.+.+
T Consensus 68 ~~~L~I~~~~~sDsgtY~Ca~~~ 90 (104)
T cd05720 68 SFVLTLKNFQKENEGYYFCSVAS 90 (104)
T ss_pred EEEEEECCCCHHHCEEEEEEEcc
Confidence 34899999999999999998764
No 320
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.16 E-value=8e-06 Score=55.68 Aligned_cols=80 Identities=15% Similarity=0.186 Sum_probs=51.2
Q ss_pred cCCCcceeecCccEEEEEEEeecCCc--eeEEecCCCeeeecCCceee--eEe---eCCeeeEEEEEEeecCCCCCeEEE
Q psy15734 180 IPNQLEGAFVSQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDDYED--SRL---INGYSCHMTLKIRSILSHQFGSYR 252 (314)
Q Consensus 180 ~~~~~~~v~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~~~--~~~---~~~~~~~s~L~i~~~~~~d~G~Y~ 252 (314)
.++....+..|..++|.|.+.|+.++ .+.|++++.. ......... ... ++.|...+.|.|..-...+...|+
T Consensus 6 ~~p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~-~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~yt 84 (102)
T cd05768 6 LPPPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQP-LSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFT 84 (102)
T ss_pred eCcChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEE-CCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEE
Confidence 34444555668899999999996554 4589997543 222111111 111 233777888888665556667899
Q ss_pred EEEeeCCC
Q psy15734 253 CVAVNALG 260 (314)
Q Consensus 253 C~a~n~~g 260 (314)
|.+.....
T Consensus 85 C~V~H~~l 92 (102)
T cd05768 85 CVVGHEAL 92 (102)
T ss_pred EEeEeCCC
Confidence 99988653
No 321
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=98.15 E-value=2.9e-05 Score=52.07 Aligned_cols=73 Identities=11% Similarity=0.136 Sum_probs=48.3
Q ss_pred cCccEEEEEEE-eecCCceeEEecCCCeeeecCCceeeeEeeCC-eeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeE
Q psy15734 189 VSQTVELHCHT-EAFPASLNYWTNEKGDMIITGDDYEDSRLING-YSCHMTLKIRSILSHQFGSYRCVAVNALGETDGF 265 (314)
Q Consensus 189 ~g~~~~l~C~~-~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 265 (314)
......+.|.+ .|.|.+.|.|+++.... .........++ +...++|.+......|.-.|+|++.|..-.....
T Consensus 14 ~~~~~va~C~s~~gkP~a~ItW~~~~~~~----~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~ 88 (95)
T cd05719 14 GEPVTVATCVSANGKPPATISWETTLGGE----AETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQR 88 (95)
T ss_pred CCccEEEEEECCCCcCCCEEEEEeCCCCc----ceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeE
Confidence 34568889998 68999999999861111 11111122333 6677888887666666669999999987544333
No 322
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=98.15 E-value=1.8e-05 Score=54.97 Aligned_cols=86 Identities=13% Similarity=0.164 Sum_probs=55.7
Q ss_pred CCCcceeecCccEEEEEEEeecCCc--eeEEecCCCeeeecCCc-eeeeEee--CCeeeEEEEEEeecCCCC-CeEEEEE
Q psy15734 181 PNQLEGAFVSQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDD-YEDSRLI--NGYSCHMTLKIRSILSHQ-FGSYRCV 254 (314)
Q Consensus 181 ~~~~~~v~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~-~~~~~~~--~~~~~~s~L~i~~~~~~d-~G~Y~C~ 254 (314)
++....+..+..++|.|.+.|+-+. .+.|++++.. +..... ....... +.|...+.|.|......| ...|+|.
T Consensus 9 ~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~-l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~ 87 (115)
T cd05769 9 PPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKE-VTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCI 87 (115)
T ss_pred CcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEE-CCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEE
Confidence 4444455567889999999995444 6789997443 322211 1112222 248888899998777655 5589999
Q ss_pred EeeCCCCceeEEE
Q psy15734 255 AVNALGETDGFIK 267 (314)
Q Consensus 255 a~n~~g~~~~~~~ 267 (314)
+............
T Consensus 88 V~H~g~~~~~~~~ 100 (115)
T cd05769 88 VQFYGGTDTDKWQ 100 (115)
T ss_pred EEEeCCccceeee
Confidence 9988766555443
No 323
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=98.14 E-value=4.6e-05 Score=50.97 Aligned_cols=68 Identities=12% Similarity=0.145 Sum_probs=42.8
Q ss_pred ecCccEEEEEEEeecCCc--eeEEecCCCeeeecCC-ceeeeEeeCC-eeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734 188 FVSQTVELHCHTEAFPAS--LNYWTNEKGDMIITGD-DYEDSRLING-YSCHMTLKIRSILSHQFGSYRCVAVNAL 259 (314)
Q Consensus 188 ~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~-~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~ 259 (314)
..++..+|.|.+.|+-+. .+.|.+++.. +.... ........++ |...+.|.+.. ++...|+|.+....
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~-~~~~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~~ 84 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVP-VTDGVSETRYYPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHWG 84 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeE-ccCceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeCC
Confidence 346678999999995443 5689997543 22211 1112223333 77777887765 34568999998764
No 324
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.13 E-value=3.8e-05 Score=49.53 Aligned_cols=62 Identities=16% Similarity=0.205 Sum_probs=44.8
Q ss_pred eEEEcCCcEEEEEEecCC--CceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEec
Q psy15734 31 VTATVGKEALMACVVENL--REYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINT 108 (314)
Q Consensus 31 ~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 108 (314)
-.+..|++++|.|..... |.+.+.|...++..... ... ...+|.+.+++..|+|.++|.+..
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~-----~~~-----------~~ktL~~~qv~~qdSG~WtC~V~~ 72 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI-----LNQ-----------DKKTLNLVQLGPNDSGTWDCIVSV 72 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCcccee-----ccC-----------CccEEEeceeCcccCCEEEEEEEE
Confidence 357889999999999553 34599999765432110 011 122799999999999999999954
No 325
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=98.12 E-value=4.7e-05 Score=52.08 Aligned_cols=81 Identities=12% Similarity=0.188 Sum_probs=53.9
Q ss_pred cCCcceEEEcCCcEEEEEEecCC--Cc-eEEEEEEcCceeEEEeee------eeeecCcCEEEEeC-CceeEEEEEeeec
Q psy15734 26 EPVANVTATVGKEALMACVVENL--RE-YKVAWVKMITQTILSIHH------KVVTQNKRVSITFN-DHRSWFLHLRDVQ 95 (314)
Q Consensus 26 ~~~~~~~v~~g~~~~l~C~~~~~--~~-~~v~W~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~L~i~~~~ 95 (314)
.++....+..|..++|.|++++. .. ..+.|+|.....++-... .......++....+ ......|.|.+++
T Consensus 3 ~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~ 82 (115)
T cd05721 3 VQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLR 82 (115)
T ss_pred eecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCC
Confidence 34556778899999999999663 33 689999975433211111 11112345544443 3345689999999
Q ss_pred CCCCeEEEEEE
Q psy15734 96 ETDRGWYMCQI 106 (314)
Q Consensus 96 ~~d~G~Y~C~~ 106 (314)
.+|++.|.|..
T Consensus 83 a~DTa~Y~Ca~ 93 (115)
T cd05721 83 ANQTDIYFCKI 93 (115)
T ss_pred HHHCeEEEEEe
Confidence 99999999976
No 326
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.07 E-value=1.8e-05 Score=55.60 Aligned_cols=74 Identities=15% Similarity=0.214 Sum_probs=47.2
Q ss_pred CCcceeecCccEEEEEEEeecC--CceeEEecCCCe---e-eec--------------CCceeeeEeeCCeeeEEEEEEe
Q psy15734 182 NQLEGAFVSQTVELHCHTEAFP--ASLNYWTNEKGD---M-IIT--------------GDDYEDSRLINGYSCHMTLKIR 241 (314)
Q Consensus 182 ~~~~~v~~g~~~~l~C~~~g~p--~p~~~W~~~~~~---~-~~~--------------~~~~~~~~~~~~~~~~s~L~i~ 241 (314)
+....+.+|++++|.|...+.. ...+.|++.... . +.. ..++.... +.......|.|.
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~--~~~~~~~~L~I~ 81 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITR--DTSKSTVYLQLN 81 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEE--EccCCEEEEEEC
Confidence 4556789999999999886543 456889874321 1 110 01111111 111123479999
Q ss_pred ecCCCCCeEEEEEEee
Q psy15734 242 SILSHQFGSYRCVAVN 257 (314)
Q Consensus 242 ~~~~~d~G~Y~C~a~n 257 (314)
++..+|+|.|.|.+..
T Consensus 82 ~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 82 SLTPEDTAVYYCARGL 97 (117)
T ss_pred CCCHHHCEEEEEEEEc
Confidence 9999999999998865
No 327
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.07 E-value=7.2e-05 Score=49.84 Aligned_cols=69 Identities=12% Similarity=0.034 Sum_probs=43.4
Q ss_pred eecCccEEEEEEEeecCCc--eeEEecCCCeeeecCCceeeeEeeCC-eeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734 187 AFVSQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDDYEDSRLING-YSCHMTLKIRSILSHQFGSYRCVAVNAL 259 (314)
Q Consensus 187 v~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~ 259 (314)
+..|+..+|.|.|.|+-++ .+.|++++.. +............++ |...+.|.+. ..+...|+|.+....
T Consensus 12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~-~~~~~~~~~~p~~d~tyq~~s~l~~~---~~~~~~ysC~V~H~~ 83 (93)
T cd05770 12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVK-IPKVEQSDLSFSKDWTFYLLKSTEFT---PTKGDEYACRVRHNS 83 (93)
T ss_pred CcCCCceEEEEEEEEEeCCCCEEEEEECCEE-CCCcEECcEEECCCCCEEEEEEEEEC---CCCCCeEEEEEEECC
Confidence 3457778999999996554 5589997443 322111122223333 6666677666 356678999998854
No 328
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.07 E-value=1.9e-05 Score=53.26 Aligned_cols=70 Identities=16% Similarity=0.295 Sum_probs=44.9
Q ss_pred EcCCcEEEEEEecCC-C-ceEEEEEEcCceeEEEeee---eeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEec
Q psy15734 34 TVGKEALMACVVENL-R-EYKVAWVKMITQTILSIHH---KVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINT 108 (314)
Q Consensus 34 ~~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 108 (314)
..|+.+.|.|.+.+. | ...++|+++ +..+..... .....++.+.+. ..|.+......|.+.|+|.+.+
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~-g~~~~~~~~~~~~~~~~~gt~~~~------s~l~v~~~~~~~~~~y~C~v~h 83 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKN-GKELTSGVTTTPPVPNSDGTYSVS------SQLTVSPSDWNSGDTYTCVVTH 83 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEEC-CEECCCceeccccccCCCCCEEEE------EEEEECHHHhCCCCCEEEEEEe
Confidence 468899999999886 5 478999995 443322111 111222233332 2577777767799999999976
Q ss_pred CC
Q psy15734 109 VP 110 (314)
Q Consensus 109 ~~ 110 (314)
.+
T Consensus 84 ~~ 85 (95)
T cd00098 84 ES 85 (95)
T ss_pred CC
Confidence 54
No 329
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=98.06 E-value=5.2e-05 Score=49.69 Aligned_cols=70 Identities=17% Similarity=0.278 Sum_probs=46.4
Q ss_pred ecCccEEEEEEEeecCCc--eeEEecCCCeeeecCCceeeeE-eeCC-eeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734 188 FVSQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDDYEDSR-LING-YSCHMTLKIRSILSHQFGSYRCVAVNALGE 261 (314)
Q Consensus 188 ~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~~~~~-~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~ 261 (314)
..+..+.|.|.+.++.+. .+.|++++ ..+.......... ..++ |...+.|.+. ..+...|+|++.+....
T Consensus 6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~-~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 6 ELGGSVTLTCLVSGFYPKDITVTWLKNG-KEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp HSTSEEEEEEEEEEEBSSTEEEEEEETT-EEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred cCCCCEEEEEEEEEEECCCcEEEEEecc-ceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence 348899999999995443 67899964 3332222222122 2344 8888888888 55566999999887543
No 330
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.04 E-value=7.4e-05 Score=48.79 Aligned_cols=64 Identities=16% Similarity=0.277 Sum_probs=37.4
Q ss_pred EEEEEEecC-CCceEEEEEEcCceeEEEeeeeeee-cCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734 39 ALMACVVEN-LREYKVAWVKMITQTILSIHHKVVT-QNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV 109 (314)
Q Consensus 39 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 109 (314)
+.|.|.+.+ .|.+.+.|++++ ..+......... .++.+.+. ..|.+......|.+.|+|.+.+.
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~-~~l~~~~~~~~~~~~~~~~~~------s~l~~~~~~~d~g~~~~C~v~h~ 67 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGD-KELKGVKLKEEDENGKTFTVT------SSLRFQVDREDDGAPIICRVDHP 67 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECC-EEccCceeeEecCCCCEEEEE------EEEEEEcchhhCCCEEEEEEeCh
Confidence 689999976 477899999954 433211111111 11122221 14666555555667999999765
No 331
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.03 E-value=6.5e-05 Score=50.58 Aligned_cols=74 Identities=14% Similarity=0.122 Sum_probs=42.8
Q ss_pred CCcceEEEcCCcEEEEEEecC-CCceE--EEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe-EE
Q psy15734 27 PVANVTATVGKEALMACVVEN-LREYK--VAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG-WY 102 (314)
Q Consensus 27 ~~~~~~v~~g~~~~l~C~~~~-~~~~~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y 102 (314)
.+....+.+|+.++|.|.+.+ .|... +.||+++ ..+....... ..... .....+|.+..- ++|.| .|
T Consensus 7 ~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~-~~l~~~~~~~-~~~~~------~~~~stlt~~~~-r~D~g~~~ 77 (100)
T cd05755 7 SPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGN-ETLSRQPFGD-NTKSP------VNAPATITITVD-REDHGANF 77 (100)
T ss_pred ecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCC-EEcccceecc-ccCCC------ceeEEEEEEecc-hhhCCcEE
Confidence 334445789999999999976 45554 7999954 4332111000 00001 112236776644 45555 89
Q ss_pred EEEEecC
Q psy15734 103 MCQINTV 109 (314)
Q Consensus 103 ~C~~~~~ 109 (314)
+|.+..+
T Consensus 78 sC~A~l~ 84 (100)
T cd05755 78 SCETELD 84 (100)
T ss_pred EEEEEec
Confidence 9999654
No 332
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=98.03 E-value=5.5e-05 Score=50.68 Aligned_cols=75 Identities=16% Similarity=0.125 Sum_probs=45.4
Q ss_pred CCcceeecCccEEEEEEEeecCCc--eeEEecCCCeeeecCCc-eeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeC
Q psy15734 182 NQLEGAFVSQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDD-YEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNA 258 (314)
Q Consensus 182 ~~~~~v~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~ 258 (314)
+....+..+..++|.|.|.|+-++ .+.|.+++.. ...+.. .......+.|...+.|.|..-.. ...|+|.+...
T Consensus 8 ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~-~~~~~~~~~~~~~~dty~~~S~L~vt~~~~--~~~ysC~V~H~ 84 (96)
T cd07697 8 PSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSP-SILGSQKSEKDKDNDVYSTTSWLTVTKDSL--GKKFRCIYKHE 84 (96)
T ss_pred CCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEE-CcCCeEeccEecCCCEEEEEEEEEECchhC--CCeEEEEEEEC
Confidence 333445556789999999996554 5589997443 222211 11112223577777887775432 33599999884
Q ss_pred C
Q psy15734 259 L 259 (314)
Q Consensus 259 ~ 259 (314)
.
T Consensus 85 g 85 (96)
T cd07697 85 G 85 (96)
T ss_pred C
Confidence 4
No 333
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.99 E-value=2.6e-05 Score=52.34 Aligned_cols=80 Identities=16% Similarity=0.238 Sum_probs=52.4
Q ss_pred EcCCCcceeecCccEEEEEEEeecC-C--ceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734 179 TIPNQLEGAFVSQTVELHCHTEAFP-A--SLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA 255 (314)
Q Consensus 179 ~~~~~~~~v~~g~~~~l~C~~~g~p-~--p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a 255 (314)
..++.......+..++|.|.+.++. + ..+.|.++++...... ......++.|...+.|.|..-..+-...|+|.+
T Consensus 8 l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t--~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V 85 (99)
T cd04986 8 LQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQT--SAESDQCGCYSVSSVLPGCAEEWNKGEPFACTV 85 (99)
T ss_pred EECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEc--CcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEE
Confidence 3455556666789999999999954 2 4778999865411111 111122334888889988865555555799999
Q ss_pred eeCCC
Q psy15734 256 VNALG 260 (314)
Q Consensus 256 ~n~~g 260 (314)
.+...
T Consensus 86 ~H~~l 90 (99)
T cd04986 86 THPEG 90 (99)
T ss_pred ECCCc
Confidence 88654
No 334
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.99 E-value=5.8e-05 Score=50.47 Aligned_cols=75 Identities=8% Similarity=0.078 Sum_probs=48.9
Q ss_pred ccEEEEEEEe-ecCCceeEEecCCCeeeecCCceeeeEe-eCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEE
Q psy15734 191 QTVELHCHTE-AFPASLNYWTNEKGDMIITGDDYEDSRL-INGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKV 268 (314)
Q Consensus 191 ~~~~l~C~~~-g~p~p~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 268 (314)
..+.+.|.+. |.|.+.|.|+++.... ........ ++.+...+.|.+......|...|+|+|.+..-.....+.+
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~----~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~ 91 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGN----ANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV 91 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCC----eeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence 4688999775 7899999999862111 11111112 2235667788887766667779999999987555554444
Q ss_pred E
Q psy15734 269 Y 269 (314)
Q Consensus 269 ~ 269 (314)
+
T Consensus 92 ~ 92 (95)
T cd07703 92 T 92 (95)
T ss_pred E
Confidence 3
No 335
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.96 E-value=7.3e-05 Score=50.14 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=45.7
Q ss_pred cCccEEEEEEEeecCCc--eeEEecCCCeeeecCC-ceeeeEe-eCCeeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734 189 VSQTVELHCHTEAFPAS--LNYWTNEKGDMIITGD-DYEDSRL-INGYSCHMTLKIRSILSHQFGSYRCVAVNAL 259 (314)
Q Consensus 189 ~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~-~~~~~~~-~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~ 259 (314)
.++.+.|.|.|.|+-+. .+.|++++.. .... ....... ++.|...+.|.+..........|+|++....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~--~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS--TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE--CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 46679999999996553 5679997443 2221 1111122 3448888899888765544568999998865
No 336
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.93 E-value=0.00012 Score=49.02 Aligned_cols=71 Identities=17% Similarity=0.129 Sum_probs=44.1
Q ss_pred ecCccEEEEEEEeecCCc--eeEEecCCCeeeecCCceeeeEeeCC-eeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734 188 FVSQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDDYEDSRLING-YSCHMTLKIRSILSHQFGSYRCVAVNALGE 261 (314)
Q Consensus 188 ~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~ 261 (314)
..|+.++|.|.+.|+-++ .+.|++++................++ |...+.|.+.. ++...|+|.+......
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~---~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTP---SRGDTYTCVVEHSSLQ 85 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcC---CCCCEEEEEEEeCCCC
Confidence 468899999999995444 66899975432221111112222333 66667776654 3556899999887644
No 337
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.88 E-value=0.00025 Score=46.35 Aligned_cols=65 Identities=17% Similarity=0.268 Sum_probs=38.6
Q ss_pred EEEEEEecC-CCceEEEEEEcCceeEEEeeeeee-ecC-cCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecCC
Q psy15734 39 ALMACVVEN-LREYKVAWVKMITQTILSIHHKVV-TQN-KRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVP 110 (314)
Q Consensus 39 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 110 (314)
+.|.|.+.+ .|...|.|++++ ..+........ ..+ ..+.+. ..|.|......|...|+|.+.+.+
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g-~~l~~~~~~~~~~~~~~t~~~~------s~l~~~~~~~d~g~~~tC~v~h~~ 69 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGD-QELEGAPTSVLEDGNGKTFTVS------SSVEFQVTREDDGAEITCSVGHES 69 (83)
T ss_pred EEEEEEecCccCCCEeEEEECC-EECCCcceeEEECCCCCEEEEE------EEEEEEecchhCCCEEEEEEECcc
Confidence 689999977 488899999954 33221110111 111 112221 257776666667789999997653
No 338
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.88 E-value=5.7e-05 Score=49.09 Aligned_cols=64 Identities=17% Similarity=0.294 Sum_probs=37.8
Q ss_pred cEEEEEEEeecCCc--eeEEecCCC----eeeecC----C-------ceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734 192 TVELHCHTEAFPAS--LNYWTNEKG----DMIITG----D-------DYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV 254 (314)
Q Consensus 192 ~~~l~C~~~g~p~p--~~~W~~~~~----~~~~~~----~-------~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~ 254 (314)
++.|.|.+.....+ .+.|++... ..+... . .-++...........+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 47899998876554 788988542 111110 0 001111111112345899999999999999996
Q ss_pred E
Q psy15734 255 A 255 (314)
Q Consensus 255 a 255 (314)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
No 339
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.84 E-value=0.012 Score=49.50 Aligned_cols=163 Identities=12% Similarity=0.108 Sum_probs=95.1
Q ss_pred EEEEeeecCCCCeEEEEEEecC-C--CcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCC---ceEEEc
Q psy15734 88 FLHLRDVQETDRGWYMCQINTV-P--MTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEP---YVAWRR 161 (314)
Q Consensus 88 ~L~i~~~~~~d~G~Y~C~~~~~-~--~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p---~~~W~~ 161 (314)
.|.|..++.+.+|.|+=...+. . .....+.+..+.+|.+.....+ +.+|+...-.|.+..+-++ .+.|+.
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~P----vL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ 258 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHA----VLEGEPFGATCVAANYYPGDRAAFRWFE 258 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc----cccCCCceEEEEeeeecCCCceEEEEEe
Confidence 4999999999999999987432 2 2233455666678887665422 5689999999999876333 688988
Q ss_pred CCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEe
Q psy15734 162 EDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIR 241 (314)
Q Consensus 162 ~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~ 241 (314)
|+.++.. . ...+.......++++..|+|++.
T Consensus 259 -ng~~V~~--------------------------------------------~----~~i~~~~~~~~dGfs~vStvtse 289 (466)
T PHA03270 259 -GGDEVFA--------------------------------------------P----ERVRTRVDAQRDGFSATSTLTSE 289 (466)
T ss_pred -CCccccC--------------------------------------------c----ceeeeeeEecCCCeeEEEEEecc
Confidence 5443210 0 00001112233445566788776
Q ss_pred ecCCC-CCeEEEEEEeeCCCCcee---EEEEEEEecCCCeeEEEEccccccEeEEEEEeeccCC-CccceE
Q psy15734 242 SILSH-QFGSYRCVAVNALGETDG---FIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVP-SVSHRI 307 (314)
Q Consensus 242 ~~~~~-d~G~Y~C~a~n~~g~~~~---~~~l~V~~~~~~~~~~~~~~~~~~g~~~C~a~~~~~~-~~~w~v 307 (314)
..... ..=+.+|.+.-..+..+. +......+-+.+.+.+ ..+.|.-.|.|.--|.. .+.|.|
T Consensus 290 a~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Isv----~F~dG~AVCtA~CVPegV~l~W~V 356 (466)
T PHA03270 290 ARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEM----EFGGDEAVCTAACVPEGVTLAWLL 356 (466)
T ss_pred ccccCCCCCCceEEEEEccCCccceeecccccCccccCCeEEE----EEeCCEEEEeccccCCCCEEEEEe
Confidence 65433 334899999876554322 2222222233343433 23557788888765532 555643
No 340
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.79 E-value=0.00045 Score=46.15 Aligned_cols=77 Identities=13% Similarity=0.027 Sum_probs=52.2
Q ss_pred CcceeecCccEEE-EEEE-eecCCceeEEecCCCeeeecCCceeeeEeeC-CeeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734 183 QLEGAFVSQTVEL-HCHT-EAFPASLNYWTNEKGDMIITGDDYEDSRLIN-GYSCHMTLKIRSILSHQFGSYRCVAVNAL 259 (314)
Q Consensus 183 ~~~~v~~g~~~~l-~C~~-~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~ 259 (314)
....+..|+.+.+ .|.+ .|.|.+.|.|+.+..... . .......+ .++..++|.+......|.-.++|++.+..
T Consensus 9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~---~-~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS---E-SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA 84 (97)
T ss_pred CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc---c-eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence 3445678899888 8876 679999999997632211 1 11111223 36677788887777777779999999886
Q ss_pred CCce
Q psy15734 260 GETD 263 (314)
Q Consensus 260 g~~~ 263 (314)
-...
T Consensus 85 l~~~ 88 (97)
T cd07704 85 LQQD 88 (97)
T ss_pred cCCC
Confidence 5433
No 341
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.77 E-value=0.0036 Score=53.26 Aligned_cols=165 Identities=15% Similarity=0.128 Sum_probs=97.1
Q ss_pred eeEEEEEeeecCCCCeEEEEEEecC----CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCC---ce
Q psy15734 85 RSWFLHLRDVQETDRGWYMCQINTV----PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEP---YV 157 (314)
Q Consensus 85 ~~~~L~i~~~~~~d~G~Y~C~~~~~----~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p---~~ 157 (314)
....|.|.++...++|.|.=.+.+. ......+.+.++.+|.+.....+ +.+|+...-.|.+..+-++ .+
T Consensus 287 ~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~P----VL~Ge~YkAtC~vA~YYPp~Svrl 362 (566)
T PHA03269 287 SDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGDP----VLLGNPYAAYCKVNKYYPPHSVIV 362 (566)
T ss_pred CccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCCc----cccCCCceEEEEeeeecCCCceEE
Confidence 3457999999999999998665322 23334556677778877665422 5689999999999876333 68
Q ss_pred EEEcCCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEe-eCCeeeEE
Q psy15734 158 AWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRL-INGYSCHM 236 (314)
Q Consensus 158 ~W~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~s 236 (314)
.|+. |+.++. ........... ++.++..|
T Consensus 363 rWf~-ng~~V~-------------------------------------------------~~~it~t~~~~~dGlFSrVS 392 (566)
T PHA03269 363 KWTS-NFGNIG-------------------------------------------------KNFITDAIKENADGLFSSVS 392 (566)
T ss_pred EEEe-CCcccC-------------------------------------------------ccccccceeecCCCceEEEE
Confidence 8888 443321 11111111112 23366677
Q ss_pred EEEEeecCCCC--CeEEEEEEeeCCCCceeE---EEEEEEecCCCeeEEEEccccccEeEEEEEeeccCC--CccceE
Q psy15734 237 TLKIRSILSHQ--FGSYRCVAVNALGETDGF---IKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVP--SVSHRI 307 (314)
Q Consensus 237 ~L~i~~~~~~d--~G~Y~C~a~n~~g~~~~~---~~l~V~~~~~~~~~~~~~~~~~~g~~~C~a~~~~~~--~~~w~v 307 (314)
+|.+......| .-..+|.+....+....+ ......+-+.+.+.+ ..+.|.-.|.|.--|.. .+.|.|
T Consensus 393 TLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtISm----~FedG~AVCtA~CVP~~~V~l~WlV 466 (566)
T PHA03269 393 ALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVSI----EIIDGHIVCLAKCVPRGVVHFNWWI 466 (566)
T ss_pred EEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCeEEE----EEeCCEEEEecccccCCCceEEEEe
Confidence 88875443333 457899998765544222 222223333344433 23567788888776532 456754
No 342
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.76 E-value=0.0005 Score=45.63 Aligned_cols=69 Identities=14% Similarity=0.228 Sum_probs=41.5
Q ss_pred CCcEEEEEEec-CCCceEEEEEEcCceeEEEeeee-eeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecCC
Q psy15734 36 GKEALMACVVE-NLREYKVAWVKMITQTILSIHHK-VVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVP 110 (314)
Q Consensus 36 g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 110 (314)
|+.+.|.|.+. +.|.+.+.|+.++.......... ....++.+.+.. .|.+..-...+...++|.+.+..
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S------~l~~~~~~~~~~~~~~C~~~~~~ 84 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSS------TLTLTPTREDHGKTLTCRASHPA 84 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEE------EEEEETTGGGTTEEEEEEEEETT
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEE------EEEEEcChHHCCeEEEEEEECCc
Confidence 77999999884 57889999999655431111111 122233333322 57766544456678999997653
No 343
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.74 E-value=0.00017 Score=45.00 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=40.8
Q ss_pred EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734 39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV 109 (314)
Q Consensus 39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 109 (314)
+.|.|.+.+.+...+.|++.+............... ........|.|.+++..|.|.|.|.+.+.
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 65 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSR------GTSSGSSTLTISNVTLEDSGTYTCVASNS 65 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEecccc------CcceeEEEEEECccCcccCcEEEEEEecC
Confidence 478999988777899999965322110000000000 01112347999999999999999999654
No 344
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.72 E-value=0.00043 Score=45.18 Aligned_cols=64 Identities=14% Similarity=0.249 Sum_probs=38.1
Q ss_pred EEEEEEecC-CCceEEEEEEcCceeEEEeeeeee--ecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734 39 ALMACVVEN-LREYKVAWVKMITQTILSIHHKVV--TQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV 109 (314)
Q Consensus 39 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 109 (314)
+.|.|.+.+ .|...++|++++ ..+........ ..++.+... ..|.+..-...|...|+|.+.+.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng-~~l~~~~~~~~~~~~~~t~~~~------s~L~~~~~~~d~g~~ytC~v~h~ 68 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKND-KEIKDVKYLKEEDANRKTFTVS------STLDFRVDRSDDGVAIICRVDHE 68 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECC-EECcCceeeEeeCCCCCEEEEE------EEEEEEcccccCCCEEEEEEech
Confidence 689999977 577899999954 43322111111 112222222 25777655556667899999764
No 345
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.63 E-value=0.00054 Score=45.91 Aligned_cols=66 Identities=12% Similarity=0.284 Sum_probs=36.8
Q ss_pred CCcEEEEEEecCC-Cc-eEEEEEEcCceeEEEeeeee--eecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecCC
Q psy15734 36 GKEALMACVVENL-RE-YKVAWVKMITQTILSIHHKV--VTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVP 110 (314)
Q Consensus 36 g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 110 (314)
|+.++|.|.+.+. |. ..+.|++++........... ...++.+... ..|. +...|.+.|+|.+.+.+
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~------s~l~---v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLW------VTLE---VPPEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEE------EEEE---ECCCCCCEEEEEEEeCC
Confidence 6789999999984 43 59999995532111100000 0111122211 1343 44458899999997653
No 346
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.62 E-value=0.00029 Score=42.97 Aligned_cols=49 Identities=20% Similarity=0.422 Sum_probs=35.8
Q ss_pred CccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEee
Q psy15734 190 SQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN 257 (314)
Q Consensus 190 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n 257 (314)
..+|.|+|.+. ..|.|+++ ....... + .+|.+.+....-.|.|.|.+++
T Consensus 6 ~~~V~L~C~~~----tsi~W~kG-~~~~~~~---------~-----~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNGA----TNITWKKG-KEILEVS---------N-----TLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecCC----CcEEEecC-ccccccc---------c-----cEEeccCcccCCCcceEecCcc
Confidence 45899999762 55999993 4333221 1 2888888888889999998877
No 347
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.61 E-value=0.00023 Score=43.10 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=33.8
Q ss_pred ecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEee
Q psy15734 188 FVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN 257 (314)
Q Consensus 188 ~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n 257 (314)
..|.+|+|+|...+. .+.|.+++.. +..... .+.+.+-. ++.|.|.|.+.+
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~-~~g~~~--------------~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQV-SQGSDE--------------KYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCcc-CCCCCc--------------eEEeeccC-CCCceEEEEeCC
Confidence 468999999986532 2999997522 211111 44444555 889999999853
No 348
>PHA02982 hypothetical protein; Provisional
Probab=97.60 E-value=0.0035 Score=47.21 Aligned_cols=121 Identities=18% Similarity=0.155 Sum_probs=76.9
Q ss_pred cceeecCccEEEEEEEe-ecCCceeEEecCCCeeeecC------------------CceeeeEeeCCeeeEEEEEEeecC
Q psy15734 184 LEGAFVSQTVELHCHTE-AFPASLNYWTNEKGDMIITG------------------DDYEDSRLINGYSCHMTLKIRSIL 244 (314)
Q Consensus 184 ~~~v~~g~~~~l~C~~~-g~p~p~~~W~~~~~~~~~~~------------------~~~~~~~~~~~~~~~s~L~i~~~~ 244 (314)
++...+++++.|.|... +..-....|+.+++..+... ..+.++... ..|+|+|.+++
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g----~~STLTIkk~~ 108 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSG----NSSTFTMKKPD 108 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEec----cceeEEeccCC
Confidence 34567899999999853 33345678999776544421 111222222 25799999999
Q ss_pred CCCCeEEEEEEeeCCCCcee-EEEEEEEecCCCeeEEEEccccccEeEEEEEeeccCCCccceEEEEE
Q psy15734 245 SHQFGSYRCVAVNALGETDG-FIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTV 311 (314)
Q Consensus 245 ~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~~~~~~~g~~~C~a~~~~~~~~~w~v~l~v 311 (314)
.+..|-|+|+|....+..+. .--|.|+.. .+....-...-....+|.+-....+-..|.|.-.|
T Consensus 109 i~N~GCYtc~~ks~~~k~E~c~kCl~V~~~---~V~~~W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv 173 (251)
T PHA02982 109 PQNLGCFTCEAKDAEGKEETCEKCLEIQKE---DILYVVEEHNNETIITCFVGSKHGDVPRFIVAGIV 173 (251)
T ss_pred cccCCceEEEEecCCCchheeheeeeEecc---eEEEEEEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence 99999999999987765543 444545322 12222223333456999998877776688886554
No 349
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.57 E-value=0.039 Score=46.99 Aligned_cols=165 Identities=15% Similarity=0.141 Sum_probs=94.8
Q ss_pred EEEEEeeecCCCCeEEEEEEecC-CCcceeEEEEE--EeCCceeeecCcceeEEecCceEEEEEEeccc-CCC--ceEEE
Q psy15734 87 WFLHLRDVQETDRGWYMCQINTV-PMTSQKGYLQV--VVPPRILLDRTSTDVVVREGTEVTLECSAVGY-PEP--YVAWR 160 (314)
Q Consensus 87 ~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v--~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p--~~~W~ 160 (314)
..|.|..++..++|.|+=...+. +......++.| +.+|.+...+.+ +.+|+...-.|.+..+ |.- .+.|+
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~P----vL~Ge~y~A~C~aa~YYPp~Sv~~rWf 273 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVHP----SLKGENYRAVCVVASYFPHSSVKLRWY 273 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc----cccCCCceEEEEeeeecCCCceEEEEE
Confidence 46999999999999998665332 22223334444 668887665422 6689999999999876 332 68999
Q ss_pred cCCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEE
Q psy15734 161 REDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKI 240 (314)
Q Consensus 161 ~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i 240 (314)
. |+.++..... -.....|+. ++.++..|+|.+
T Consensus 274 ~-dg~~V~~~~~------------------------------~~~~~~~~~-----------------~gl~T~vStlt~ 305 (486)
T PHA03273 274 K-NAKEVDFTKY------------------------------VTNASSVWV-----------------DGLITRISTLSI 305 (486)
T ss_pred e-CCeecccccc------------------------------ceeeEEEec-----------------CCceEEEEEEec
Confidence 8 5543210000 000111211 122345568888
Q ss_pred eecCC-CCCeEEEEEEeeCCCCce-eE--EEEEEEecCCCeeEEEEccccccEeEEEEEeeccC--CCccceE
Q psy15734 241 RSILS-HQFGSYRCVAVNALGETD-GF--IKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVV--PSVSHRI 307 (314)
Q Consensus 241 ~~~~~-~d~G~Y~C~a~n~~g~~~-~~--~~l~V~~~~~~~~~~~~~~~~~~g~~~C~a~~~~~--~~~~w~v 307 (314)
..... +..-..+|.+....+..+ +. ......+-+.+.+.+ ..+.|.-.|.|.--|. -.+.|.|
T Consensus 306 ~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is~----~F~~G~AVCtA~CVP~egV~l~W~v 374 (486)
T PHA03273 306 PVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVSV----TVEDGDAVCTAKCVPSTGVFVSWSV 374 (486)
T ss_pred cCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEEE----EEeCCEEEEecccccCCCeeEEEEc
Confidence 77544 445589999987655432 22 222223333344433 2355778888876654 2555644
No 350
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.53 E-value=0.00099 Score=44.59 Aligned_cols=69 Identities=13% Similarity=0.201 Sum_probs=39.8
Q ss_pred cCCcEEEEEEecCC-C-ceEEEEEEcCceeEEEe---eeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734 35 VGKEALMACVVENL-R-EYKVAWVKMITQTILSI---HHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV 109 (314)
Q Consensus 35 ~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 109 (314)
.++.+.|.|.+.+. | ...|.|++++ ..+... .......++.+.+.. .|.+..-...+...|+|.+.+.
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg-~~~~~~~~~s~~~~~~~~Ty~~~S------~L~v~~~~w~~~~~ytC~V~H~ 85 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDG-QVATLVAASTAPQKEEGSTFSTTS------ELNVTQEDWKSGKTYTCKVTHQ 85 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECC-EECcCceeecccEECCCCcEEEEE------EEEEchHHhcCCCeEEEEEEEC
Confidence 45679999999884 4 3789999954 332111 001111223333322 5666654444667899999764
Q ss_pred C
Q psy15734 110 P 110 (314)
Q Consensus 110 ~ 110 (314)
+
T Consensus 86 ~ 86 (94)
T cd05847 86 G 86 (94)
T ss_pred C
Confidence 3
No 351
>PHA02633 hypothetical protein; Provisional
Probab=97.50 E-value=0.0003 Score=41.74 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=33.9
Q ss_pred EEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecC
Q psy15734 237 TLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVD 274 (314)
Q Consensus 237 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~ 274 (314)
.|.|-++..+|+|.|.|...|..-....++.|.|....
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 89999999999999999999988888888888887654
No 352
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.48 E-value=0.047 Score=45.81 Aligned_cols=235 Identities=14% Similarity=0.233 Sum_probs=126.6
Q ss_pred CCCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEc-------------CceeEEEe--------eeee------
Q psy15734 18 KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKM-------------ITQTILSI--------HHKV------ 70 (314)
Q Consensus 18 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~-------------~~~~~~~~--------~~~~------ 70 (314)
....|.++-..+++-+...++-.+.|...-.|+..-.|..- +.+.++.. ....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (490)
T PHA03271 91 AHKMPSIVCDKEEVFVFLNKTGRFVCTLKVDPPSDNEWSNFALDLIFNPIEYHANEKNVEAARIAGLYGVPGSDYAYPRP 170 (490)
T ss_pred cccCCceeeccceEEEEEcCCCcEEEEEEeCCCCcchhhhheeeeeecchhhcccccchhhhhhcccccCCCccccCCCH
Confidence 34578888888889999999999999987666655566321 10000000 0000
Q ss_pred ------e-------------ecCcCEEEEeC-CceeEEEEEeeecCCCCeEEEEEEec---CCCcceeEEEEEEe-CCce
Q psy15734 71 ------V-------------TQNKRVSITFN-DHRSWFLHLRDVQETDRGWYMCQINT---VPMTSQKGYLQVVV-PPRI 126 (314)
Q Consensus 71 ------~-------------~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~---~~~~~~~~~l~v~~-~p~~ 126 (314)
+ ..+.++.+-.+ ......|.|.++...|+|-|+-...+ .........+.+.. +|.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~ky~i~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsV 250 (490)
T PHA03271 171 SELISSIRRDPQGTFWTSPSPHGNKYFIWINKTTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASV 250 (490)
T ss_pred HHHhHHhhcCCCCccccCCCCCCceeEEeeccccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCc
Confidence 0 00112222211 11234799999999999966444432 23334444555544 5556
Q ss_pred eeecCcceeEEecCceEEEEEEecccCCC---ceEEEcCCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecC
Q psy15734 127 LLDRTSTDVVVREGTEVTLECSAVGYPEP---YVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFP 203 (314)
Q Consensus 127 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~p---~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p 203 (314)
...+.+ +.+|+...-.|.+..+-+| .+.|+. ||.+..... -
T Consensus 251 sV~a~P----VL~Ge~YkAtC~vAnYYPP~SvrlrWf~-nG~~V~~~~-------------------------------~ 294 (490)
T PHA03271 251 DVLAPP----VLSGENYKASCIVRHFYPPGSVYVSWRQ-NGNIATPRK-------------------------------D 294 (490)
T ss_pred cccCCc----cccCCCceEEEEeeeecCCCceEEEEEe-CCccccCcc-------------------------------c
Confidence 554422 5689999999999876333 789998 554421000 0
Q ss_pred CceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEE--EEEEEecCCCeeEEE
Q psy15734 204 ASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFI--KVYVNLVDGDIFQIR 281 (314)
Q Consensus 204 ~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~--~l~V~~~~~~~~~~~ 281 (314)
.....|+.++ .++.+..|+|.+.+...+..-..+|.+.-..+...... .....+-+.+.+.+
T Consensus 295 rdt~~~w~d~---------------~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~VY~~P~ISv- 358 (490)
T PHA03271 295 RDGSFWWFES---------------GRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIPTVYHHPRISL- 358 (490)
T ss_pred cceeEEEecC---------------CCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccCCccccCCeEEE-
Confidence 1122332221 12223345777766544455589999987665333322 22222223333332
Q ss_pred EccccccEeEEEEEeeccC-CCccceE
Q psy15734 282 KMSRLHMGAYLCIASNGVV-PSVSHRI 307 (314)
Q Consensus 282 ~~~~~~~g~~~C~a~~~~~-~~~~w~v 307 (314)
..+.|.-.|.|.--|. -.+.|.|
T Consensus 359 ---~FedG~AVCtA~CVP~gV~lrWlV 382 (490)
T PHA03271 359 ---AFKDGYAICTIECVPSGITVRWLV 382 (490)
T ss_pred ---EEeCCEEEEeccccCCCcEEEEEe
Confidence 3355777888876552 2555644
No 353
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.44 E-value=0.0018 Score=41.35 Aligned_cols=65 Identities=14% Similarity=0.305 Sum_probs=38.0
Q ss_pred EEEEEEecCC-Cc-eEEEEEEcCceeEEEeee-ee-eecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734 39 ALMACVVENL-RE-YKVAWVKMITQTILSIHH-KV-VTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV 109 (314)
Q Consensus 39 ~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 109 (314)
++|.|.+.+. |. ..+.|++++......... .. ...++.+.+.. .|.|......+...|+|.+.+.
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s------~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSS------YLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEE------EEEEccccCCCCCEEEEEEEEc
Confidence 6899999885 44 699999954321111000 00 11233333322 5776666667778999999654
No 354
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.43 E-value=0.0016 Score=43.80 Aligned_cols=78 Identities=17% Similarity=0.275 Sum_probs=44.3
Q ss_pred CCcceEEEcCCcEEEEEEecCC--C-ceEEEEEEcCceeEEEeee-eeeecCcCEEEEeCCceeEEEEEeeecCCCCeEE
Q psy15734 27 PVANVTATVGKEALMACVVENL--R-EYKVAWVKMITQTILSIHH-KVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWY 102 (314)
Q Consensus 27 ~~~~~~v~~g~~~~l~C~~~~~--~-~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 102 (314)
+|..-.+..|+.++|.|.+.+. | ...|.|.|+++........ .....++.+.+.. .|.+..-...+...|
T Consensus 5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s------~l~v~~~~w~~g~~y 78 (96)
T cd07696 5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTS------TLNVSTDDWISGDTF 78 (96)
T ss_pred CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEE------EEEeCHHHccCCCcE
Confidence 3444446678999999999876 3 3688999965433221111 0111223333322 455555443345579
Q ss_pred EEEEecCC
Q psy15734 103 MCQINTVP 110 (314)
Q Consensus 103 ~C~~~~~~ 110 (314)
+|.+.+.+
T Consensus 79 sC~V~H~~ 86 (96)
T cd07696 79 QCKVTHPD 86 (96)
T ss_pred EEEEECCC
Confidence 99997643
No 355
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.41 E-value=0.0011 Score=45.12 Aligned_cols=76 Identities=16% Similarity=0.270 Sum_probs=44.6
Q ss_pred CCcceEEEcCCcEEEEEEecCC-C-ceEEEEEEcCceeEEEe-e-ee-eeecCcCEEEEeCCceeEEEEEeeecCCCCeE
Q psy15734 27 PVANVTATVGKEALMACVVENL-R-EYKVAWVKMITQTILSI-H-HK-VVTQNKRVSITFNDHRSWFLHLRDVQETDRGW 101 (314)
Q Consensus 27 ~~~~~~v~~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~~-~-~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 101 (314)
++.......++.++|.|.+.+. | ...|.|++++ ..+... . .. ....++.+.+.. .|.+..-...+...
T Consensus 8 ~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g-~~~~~~~~~~~~~~~~dgty~~~s------~L~v~~~~w~~~~~ 80 (100)
T cd07699 8 PPSSEELEKSGKATLVCLINDFYPGFATVQWKVDG-ATVSSGVQTSTTEQQSDNTYSLSS------YLTLTKSDWNKHKV 80 (100)
T ss_pred CCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECC-EECcccEeccccEECCCCCEEEEE------EEEEcHHHhCCCCe
Confidence 3444445567889999999873 4 5789999954 333111 0 00 011133343322 56666555555678
Q ss_pred EEEEEecC
Q psy15734 102 YMCQINTV 109 (314)
Q Consensus 102 Y~C~~~~~ 109 (314)
|+|.+.+.
T Consensus 81 ~sC~V~H~ 88 (100)
T cd07699 81 YTCEVTHE 88 (100)
T ss_pred EEEEEEec
Confidence 99999754
No 356
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.35 E-value=0.0027 Score=43.95 Aligned_cols=71 Identities=14% Similarity=0.284 Sum_probs=40.0
Q ss_pred EEEcCCcEEEEEEecCC-C-ceEEEEEEcCceeEEEeeeeee-ecC-cCEEEEeCCceeEEEEEeeecCCCCe-EEEEEE
Q psy15734 32 TATVGKEALMACVVENL-R-EYKVAWVKMITQTILSIHHKVV-TQN-KRVSITFNDHRSWFLHLRDVQETDRG-WYMCQI 106 (314)
Q Consensus 32 ~v~~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~ 106 (314)
....|+.++|.|.+.+. | ...++|++++ ..+........ ..+ +.+.+. ..|.+.. ...|.| .|+|.+
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng-~~~~~~~~~~~p~~d~~ty~~~------S~L~~~~-~~~d~~~~ytC~V 88 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNG-NELSAEQPNITPEGDSVSYNVT------STVQVKL-TEDDVHSQVTCEV 88 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECC-EECcccccceeeCCCCCcEEEE------EEEEEEC-ccccccCceEEEE
Confidence 34568889999999884 4 3799999954 43321111111 111 122222 1455554 445544 599999
Q ss_pred ecCC
Q psy15734 107 NTVP 110 (314)
Q Consensus 107 ~~~~ 110 (314)
.+.+
T Consensus 89 ~H~~ 92 (111)
T cd05772 89 QHRT 92 (111)
T ss_pred EeCC
Confidence 7654
No 357
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=97.15 E-value=0.00051 Score=48.22 Aligned_cols=83 Identities=17% Similarity=0.272 Sum_probs=46.5
Q ss_pred ecCccEEEEEEEeec-----CCceeEEecCCCeeeecCCceeee--------EeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734 188 FVSQTVELHCHTEAF-----PASLNYWTNEKGDMIITGDDYEDS--------RLINGYSCHMTLKIRSILSHQFGSYRCV 254 (314)
Q Consensus 188 ~~g~~~~l~C~~~g~-----p~p~~~W~~~~~~~~~~~~~~~~~--------~~~~~~~~~s~L~i~~~~~~d~G~Y~C~ 254 (314)
.-.+++.|.|.++.. +...+.|.+++..+..-......+ .....-.++.+|.+...+.- .|+|+|+
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe 103 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE 103 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence 457899999999752 334678998654433222111111 00111223457888875544 8999999
Q ss_pred EeeCCCCceeEEEEEEE
Q psy15734 255 AVNALGETDGFIKVYVN 271 (314)
Q Consensus 255 a~n~~g~~~~~~~l~V~ 271 (314)
+.......+..+.|+..
T Consensus 104 Vt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 104 VTELSREGETTIELKYR 120 (130)
T ss_dssp EEETTEEEEEEEEEEE-
T ss_pred EEecCCCceEEEEEEEE
Confidence 99988777788777664
No 358
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.14 E-value=0.0027 Score=43.27 Aligned_cols=76 Identities=13% Similarity=0.190 Sum_probs=41.2
Q ss_pred CcceEEEcCCcEEEEEEecCC-C-ceEEEEEEcCceeEEEeeeee--eec----CcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734 28 VANVTATVGKEALMACVVENL-R-EYKVAWVKMITQTILSIHHKV--VTQ----NKRVSITFNDHRSWFLHLRDVQETDR 99 (314)
Q Consensus 28 ~~~~~v~~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~L~i~~~~~~d~ 99 (314)
+....+..|..++|.|.+.+. | ...+.|++++ ..+....... ... ++.+.+.. .|.|..-...+.
T Consensus 8 p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g-~~~~~~~~~~~~~~~~~~~dgTy~~~s------~L~v~~~~w~~~ 80 (102)
T cd05768 8 PPSEELSLQETATLTCLVKGFSPSDIFVKWLQNG-QPLSKQKYVTTAPMQEPGGNESYFLYS------KLTVSAEDWNAG 80 (102)
T ss_pred cChHHhCcCCceEEEEEEeeEeCCCCEEEEEECC-EECCcccccccCcccccCCCCeEEEEE------EEEEcHHHhcCC
Confidence 333344457889999999884 3 3678999954 3221110000 000 12233221 466644333455
Q ss_pred eEEEEEEecCC
Q psy15734 100 GWYMCQINTVP 110 (314)
Q Consensus 100 G~Y~C~~~~~~ 110 (314)
..|+|.+.+.+
T Consensus 81 ~~ytC~V~H~~ 91 (102)
T cd05768 81 DVFTCVVGHEA 91 (102)
T ss_pred CcEEEEeEeCC
Confidence 68999997643
No 359
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.14 E-value=0.0079 Score=41.35 Aligned_cols=20 Identities=15% Similarity=0.413 Sum_probs=18.4
Q ss_pred EEEEEeecCCCCCeEEEEEE
Q psy15734 236 MTLKIRSILSHQFGSYRCVA 255 (314)
Q Consensus 236 s~L~i~~~~~~d~G~Y~C~a 255 (314)
..|.|.+++.+|.+.|.|..
T Consensus 74 v~L~l~~L~a~DTa~Y~Ca~ 93 (115)
T cd05721 74 VNFTLQNLRANQTDIYFCKI 93 (115)
T ss_pred EEEEEcCCCHHHCeEEEEEe
Confidence 49999999999999999975
No 360
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.11 E-value=0.0051 Score=40.15 Aligned_cols=65 Identities=17% Similarity=0.316 Sum_probs=39.2
Q ss_pred CCcEEEEEEecCC-C-ceEEEEEEcCceeEEE---eeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecCC
Q psy15734 36 GKEALMACVVENL-R-EYKVAWVKMITQTILS---IHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVP 110 (314)
Q Consensus 36 g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 110 (314)
++.+.|.|.+.+. | ...|.|++++. .+.. ........++.+.+.. .|.+. ..+...|+|.+.+.+
T Consensus 8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~-~~~~~~~~~~~~~~~dgty~~~s------~l~v~---~~~~~~ysC~V~H~~ 77 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDITVTWLKNGK-EVTEGVETTPPPPNSDGTYSVTS------SLTVT---WNSGDEYSCRVTHES 77 (83)
T ss_dssp TSEEEEEEEEEEEBSSTEEEEEEETTE-EETTTEEEEEEEEETTSEEEEEE------EEEEE---TTTTGGEEEEEEETT
T ss_pred CCCEEEEEEEEEEECCCcEEEEEeccc-eeeeeeeecccccccccceeeeE------EEEec---CCCCCEEEEEEEECC
Confidence 7899999999873 3 46899999543 3211 0111112344444432 45555 566668999997654
No 361
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.09 E-value=0.0056 Score=40.99 Aligned_cols=67 Identities=18% Similarity=0.233 Sum_probs=38.2
Q ss_pred EcCCcEEEEEEecCC-C-ceEEEEEEcCceeEEEe-eeee--eecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEec
Q psy15734 34 TVGKEALMACVVENL-R-EYKVAWVKMITQTILSI-HHKV--VTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINT 108 (314)
Q Consensus 34 ~~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 108 (314)
..|+.++|.|.+.+. | ...+.|++++ ..+... .... ...++.+.+.. .|.+ ...+...|+|.+.+
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g-~~~~~~~~~~~~~~~~dgTy~~~s------~L~~---~~~~~~~ysC~V~H 81 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNG-QEETEGVVSTELIPNGDWTYQILV------MLET---TPSRGDTYTCVVEH 81 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECC-eecCCCceecceEECCCCcEEEEE------EEEE---cCCCCCEEEEEEEe
Confidence 368899999999884 4 3589999954 332211 0001 11122233221 3443 34566789999976
Q ss_pred CC
Q psy15734 109 VP 110 (314)
Q Consensus 109 ~~ 110 (314)
.+
T Consensus 82 ~~ 83 (94)
T cd05766 82 SS 83 (94)
T ss_pred CC
Confidence 54
No 362
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.06 E-value=0.0046 Score=43.01 Aligned_cols=82 Identities=13% Similarity=0.237 Sum_probs=45.3
Q ss_pred CCcceEEEcCCcEEEEEEecCC-Cc-eEEEEEEcCceeEEEeee---eeeecC-cCEEEEeCCceeEEEEEeeecCCC-C
Q psy15734 27 PVANVTATVGKEALMACVVENL-RE-YKVAWVKMITQTILSIHH---KVVTQN-KRVSITFNDHRSWFLHLRDVQETD-R 99 (314)
Q Consensus 27 ~~~~~~v~~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d-~ 99 (314)
++....+.+++.++|.|.+.+. |. ..|.|++++ ..+..... .....+ +.+.+. ..|.|..-...| .
T Consensus 9 ~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng-~~l~~g~~~~~~~~~~~~gTYs~~------S~L~v~~~~w~~~~ 81 (115)
T cd05769 9 PPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNG-KEVTDGVATDPQALRENTSTYSIS------SRLRVSATEWFNPR 81 (115)
T ss_pred CcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECC-EECCCCcccccceecCCCCeEEEE------EEEEEChHHhccCC
Confidence 3434444467789999999884 44 689999954 33221100 001111 222222 256666555444 5
Q ss_pred eEEEEEEecCCCccee
Q psy15734 100 GWYMCQINTVPMTSQK 115 (314)
Q Consensus 100 G~Y~C~~~~~~~~~~~ 115 (314)
..|+|.+.+.+.....
T Consensus 82 ~~ytC~V~H~g~~~~~ 97 (115)
T cd05769 82 NTFTCIVQFYGGTDTD 97 (115)
T ss_pred CeEEEEEEEeCCccce
Confidence 6899999765544433
No 363
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.05 E-value=0.0084 Score=40.19 Aligned_cols=65 Identities=14% Similarity=0.217 Sum_probs=38.4
Q ss_pred CcEEEEEEe-cCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734 37 KEALMACVV-ENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV 109 (314)
Q Consensus 37 ~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 109 (314)
....+.|.+ .+.|...|.|+++....... ......++.+.+.. .|.+......|...|+|.+.+.
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~~~--~~~~~~~g~~tv~S------~l~~~p~~~d~G~~~tC~v~h~ 81 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTLGGEAET--QSKENPNGTVTVTS------EYRLVPSREANGKELTCVVSHP 81 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCCCCccee--EeecCCCCCEEEEE------EEEEecCHHHCCCEEEEEEeCc
Confidence 456779999 46799999999952111111 11112223333332 5777665555566899999764
No 364
>PHA02982 hypothetical protein; Provisional
Probab=97.02 E-value=0.024 Score=42.87 Aligned_cols=124 Identities=12% Similarity=0.229 Sum_probs=72.1
Q ss_pred cceEEEcCCcEEEEEEecCC-CceEEEEEEcCceeEEEee--eeeee-----c---CcCEEEEeCCceeEEEEEeeecCC
Q psy15734 29 ANVTATVGKEALMACVVENL-REYKVAWVKMITQTILSIH--HKVVT-----Q---NKRVSITFNDHRSWFLHLRDVQET 97 (314)
Q Consensus 29 ~~~~v~~g~~~~l~C~~~~~-~~~~v~W~~~~~~~~~~~~--~~~~~-----~---~~~~~~~~~~~~~~~L~i~~~~~~ 97 (314)
.++.+..+++|.|.|..... .-....|...++.-+.... ...+. . ...+.++.++.. .+|+|.++..+
T Consensus 32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~-STLTIkk~~i~ 110 (251)
T PHA02982 32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNS-STFTMKKPDPQ 110 (251)
T ss_pred hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccc-eeEEeccCCcc
Confidence 45667889999999997543 3467899985543222111 11111 1 112334433333 48999999999
Q ss_pred CCeEEEEEEecCCCcce--eEEEEEEeCCceeeecCcceeEEecCc-eEEEEEEecccCCCceEEEc
Q psy15734 98 DRGWYMCQINTVPMTSQ--KGYLQVVVPPRILLDRTSTDVVVREGT-EVTLECSAVGYPEPYVAWRR 161 (314)
Q Consensus 98 d~G~Y~C~~~~~~~~~~--~~~l~v~~~p~~~~~~~~~~~~~~~g~-~~~l~C~~~~~p~p~~~W~~ 161 (314)
+.|.|+|.+........ ...|.|+....+.. +.++. ...+.|-+-+...+...|.-
T Consensus 111 N~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~~--------W~e~nNeT~V~CyVgS~~~dvp~W~V 169 (251)
T PHA02982 111 NLGCFTCEAKDAEGKEETCEKCLEIQKEDILYV--------VEEHNNETIITCFVGSKHGDVPRFIV 169 (251)
T ss_pred cCCceEEEEecCCCchheeheeeeEecceEEEE--------EEecCCeEEEEEEEEeccCCCccEEE
Confidence 99999999975443333 33466633221111 12233 34568987766444348876
No 365
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.02 E-value=0.004 Score=41.89 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=42.2
Q ss_pred CCcceEEEcCCcEEEEEEecCCC---ceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe-EE
Q psy15734 27 PVANVTATVGKEALMACVVENLR---EYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG-WY 102 (314)
Q Consensus 27 ~~~~~~v~~g~~~~l~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y 102 (314)
+|.......+..++|.|.+.+.. ...|.|.+++...... .......++.+.+.. .|.+..- ...+| .|
T Consensus 10 pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~-t~~~~~~dgTys~~S------~L~v~~~-~W~~g~~y 81 (99)
T cd04986 10 RPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQ-TSAESDQCGCYSVSS------VLPGCAE-EWNKGEPF 81 (99)
T ss_pred CcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEE-cCcccCCCCCEEEEE------EEEeCHH-HhcCCCeE
Confidence 44434455688999999998843 4789999965431100 000111233333322 5665532 33344 59
Q ss_pred EEEEecCC
Q psy15734 103 MCQINTVP 110 (314)
Q Consensus 103 ~C~~~~~~ 110 (314)
+|.+.+.+
T Consensus 82 tC~V~H~~ 89 (99)
T cd04986 82 ACTVTHPE 89 (99)
T ss_pred EEEEECCC
Confidence 99997643
No 366
>KOG1480|consensus
Probab=96.99 E-value=0.00019 Score=64.05 Aligned_cols=175 Identities=19% Similarity=0.302 Sum_probs=92.1
Q ss_pred CCCceecCCcceEEEcCCcEEEEEEecCCCc----eEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeec
Q psy15734 20 DMPRFAEPVANVTATVGKEALMACVVENLRE----YKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQ 95 (314)
Q Consensus 20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~----~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 95 (314)
.-|.|+..+.+..+..|..+.|.|.+...+. +.-.|.......... ......++ .+.. ....|..-+
T Consensus 23 ~l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~---~~d~tsg~-~~~~-----~si~Isr~~ 93 (909)
T KOG1480|consen 23 DLPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLE---GTDETSGL-GVRE-----VSIDISRQQ 93 (909)
T ss_pred CcceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeee---ccCcccce-eEEe-----eeeeeehhh
Confidence 4567888899999999999999999865433 223455422111000 00011111 1111 134444444
Q ss_pred CCCCe---EEEEEEec--C-C-CcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEe-cccCCCceEEEcCCCcee
Q psy15734 96 ETDRG---WYMCQINT--V-P-MTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSA-VGYPEPYVAWRREDGKAI 167 (314)
Q Consensus 96 ~~d~G---~Y~C~~~~--~-~-~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~~~W~~~~~~~~ 167 (314)
.++.+ .|.|+-.- . + ..+....+++...-..... .+.-..+..+....+.|.. .+.|...+.|++ ++..+
T Consensus 94 v~~~~~~~d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~-~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k-~e~~~ 171 (909)
T KOG1480|consen 94 VETSGGPEDYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQ-SPVGQEVQEETTLQLPCRPPEGDPKAEVEWLK-NEVVI 171 (909)
T ss_pred hhcccCccceeeeeeeecCCCcchhhhHHHHHHHHHHhhcc-ChhhheecccccccccccCcccchhhhhhccc-cCCCC
Confidence 44443 48888522 1 2 1111111111111111111 1334456677788888775 466777888888 33221
Q ss_pred ecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCC
Q psy15734 168 NYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQ 247 (314)
Q Consensus 168 ~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d 247 (314)
. . .. ......+. .|.|..++..|
T Consensus 172 ~--------------------------------------------------p-d~-n~~~~~d~-----~li~~~arlsd 194 (909)
T KOG1480|consen 172 D--------------------------------------------------P-DA-NVIRASDH-----NLIISQARLSD 194 (909)
T ss_pred C--------------------------------------------------c-cc-cchhhhcC-----Cccccchhhhh
Confidence 1 1 00 00111122 78899999999
Q ss_pred CeEEEEEEeeCCCCc
Q psy15734 248 FGSYRCVAVNALGET 262 (314)
Q Consensus 248 ~G~Y~C~a~n~~g~~ 262 (314)
.|+|+|+|.|-.+..
T Consensus 195 ~~nytc~a~ni~~~r 209 (909)
T KOG1480|consen 195 SGNYTCEATNIVAKR 209 (909)
T ss_pred cccceeeeehhhccc
Confidence 999999999987654
No 367
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=96.97 E-value=0.0092 Score=39.77 Aligned_cols=67 Identities=13% Similarity=0.225 Sum_probs=38.2
Q ss_pred EcCCcEEEEEEecCC--CceEEEEEEcCceeEEEeeeee--eecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734 34 TVGKEALMACVVENL--REYKVAWVKMITQTILSIHHKV--VTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV 109 (314)
Q Consensus 34 ~~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 109 (314)
..|...+|.|.+.+. +...+.|.+++ +.+....... ...+..+.+.. .|. +...+...|+|.+...
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg-~~~~~~~~~~~~p~~d~tyq~~s------~l~---~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNG-VKIPKVEQSDLSFSKDWTFYLLK------STE---FTPTKGDEYACRVRHN 82 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECC-EECCCcEECcEEECCCCCEEEEE------EEE---ECCCCCCeEEEEEEEC
Confidence 346677999999884 35789999954 4332111111 11223333221 343 4456777899999764
Q ss_pred C
Q psy15734 110 P 110 (314)
Q Consensus 110 ~ 110 (314)
+
T Consensus 83 ~ 83 (93)
T cd05770 83 S 83 (93)
T ss_pred C
Confidence 3
No 368
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.96 E-value=0.014 Score=38.96 Aligned_cols=66 Identities=17% Similarity=0.314 Sum_probs=38.0
Q ss_pred cCCcEEEEEEecCC-C-ceEEEEEEcCceeEEEe---eeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734 35 VGKEALMACVVENL-R-EYKVAWVKMITQTILSI---HHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV 109 (314)
Q Consensus 35 ~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 109 (314)
.|+..+|.|.+.+. | ...+.|.+++ ..+... .......++.+.+.. .|.+. +.+...|+|.+...
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g-~~~~~~~~~~~~~~~~Dgty~~~s------~L~v~---~~~~~~ytC~V~H~ 83 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNG-VPVTDGVSETRYYPRQDLSFQKFS------YLNFT---PEEGDIYSCIVEHW 83 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECC-eEccCceEEeeeEeCCCCcEEEEE------EEEEE---CCCCCeEEEEEEeC
Confidence 46668999999884 3 4789999954 332110 011112233333322 45544 35667899999764
Q ss_pred C
Q psy15734 110 P 110 (314)
Q Consensus 110 ~ 110 (314)
+
T Consensus 84 ~ 84 (94)
T cd05767 84 G 84 (94)
T ss_pred C
Confidence 3
No 369
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.93 E-value=0.0025 Score=38.64 Aligned_cols=50 Identities=14% Similarity=0.298 Sum_probs=32.9
Q ss_pred EcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEe
Q psy15734 34 TVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQIN 107 (314)
Q Consensus 34 ~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 107 (314)
..|.+|+|+|...+. .+.|.+++.. + ..+.. .+.+.+.. +++|.|.|.+.
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~-~--------~g~~~-----------~~~~~~~~-e~~G~Y~C~~~ 54 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQV-S--------QGSDE-----------KYLSLNHF-SSSGYYHCTAD 54 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCcc-C--------CCCCc-----------eEEeeccC-CCCceEEEEeC
Confidence 468999999986532 3999996521 1 11111 34455555 89999999984
No 370
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.93 E-value=0.02 Score=38.31 Aligned_cols=73 Identities=14% Similarity=0.163 Sum_probs=47.2
Q ss_pred cceEEEcCCcEEE-EEEec-CCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEE
Q psy15734 29 ANVTATVGKEALM-ACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI 106 (314)
Q Consensus 29 ~~~~v~~g~~~~l-~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 106 (314)
..+.+.+|+.+.+ .|.+. +.|...|.|+.+..... ........++.+.+.. .|.+...+..|.-.++|.+
T Consensus 9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~--~~~~~~~~ngT~TV~S------~~~l~p~r~d~G~~vtC~V 80 (97)
T cd07704 9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS--ESHSQEHPNGTTTVTS------EYIWVPSRHANGHPLTCVV 80 (97)
T ss_pred CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc--ceeeecCCCCCEEEEE------EEEEEeCHHHCCcEEEEEE
Confidence 3566788899999 99984 57889999997532211 1111122334444443 5777666666777899999
Q ss_pred ecC
Q psy15734 107 NTV 109 (314)
Q Consensus 107 ~~~ 109 (314)
.+.
T Consensus 81 ~H~ 83 (97)
T cd07704 81 SHP 83 (97)
T ss_pred eCc
Confidence 754
No 371
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=96.91 E-value=0.014 Score=39.20 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=26.5
Q ss_pred EEEEeecCCCCCeEEEEEEeeCCCCc-eeEEEEEE
Q psy15734 237 TLKIRSILSHQFGSYRCVAVNALGET-DGFIKVYV 270 (314)
Q Consensus 237 ~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V 270 (314)
.|.|+.++.+|+|.|.-++++..|.. ...+.+.|
T Consensus 72 aLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 72 ALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp EEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred eEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 99999999999999999999998877 34444444
No 372
>PHA02633 hypothetical protein; Provisional
Probab=96.89 E-value=0.0027 Score=37.79 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=26.8
Q ss_pred EEEEeeecCCCCeEEEEEEecCC-CcceeEEEEEEeC
Q psy15734 88 FLHLRDVQETDRGWYMCQINTVP-MTSQKGYLQVVVP 123 (314)
Q Consensus 88 ~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~ 123 (314)
.|+|-++..+|+|.|.|.+++.. ....++.|.|...
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~ 55 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR 55 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence 69999999999999999997653 3344455555543
No 373
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=96.89 E-value=0.014 Score=39.09 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=20.4
Q ss_pred EEcCCcEEEEEEecCC--CceEEEEEEcC
Q psy15734 33 ATVGKEALMACVVENL--REYKVAWVKMI 59 (314)
Q Consensus 33 v~~g~~~~l~C~~~~~--~~~~v~W~~~~ 59 (314)
...+..++|.|.+.+. +...+.|.+++
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng 41 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGN 41 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECC
Confidence 3345779999999884 35789999954
No 374
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.89 E-value=0.015 Score=38.93 Aligned_cols=65 Identities=12% Similarity=0.206 Sum_probs=39.6
Q ss_pred CcEEEEEEec-CCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734 37 KEALMACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV 109 (314)
Q Consensus 37 ~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 109 (314)
..+.+.|.+. +.|...|.|+++....... ......++.+.+.. .|.+......|...|+|++.+.
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~--~~~~~~~gt~tv~S------~l~~~P~~~d~Gk~ltC~v~h~ 81 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNANT--TSKENGDGTVTVTS------EYSLVPTPEANGKEVTCKVEHE 81 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCeeE--EEEeCCCCCEEEEE------EEEEecCHHHCCCEEEEEEeCc
Confidence 3578899885 5788999999852211111 11112233344332 5777666666666899999764
No 375
>PHA03042 CD47-like protein; Provisional
Probab=96.75 E-value=0.011 Score=46.60 Aligned_cols=71 Identities=15% Similarity=0.303 Sum_probs=47.6
Q ss_pred cCccEEEEEEEeec-----CCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCce
Q psy15734 189 VSQTVELHCHTEAF-----PASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETD 263 (314)
Q Consensus 189 ~g~~~~l~C~~~g~-----p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 263 (314)
-.+++.+.|.++.. ..-.+.|.+++......... .. ++|.+... ..-.|+|+|+|.+......
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-n~----------aSL~~~f~-~~l~GNYTCEv~~l~n~gk 97 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-NT----------SSLKFNFS-KNLSGNYTCEAINKFNKIK 97 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-cc----------eEEEEecc-ccCCCceeEEEeecccCcc
Confidence 47789999999763 45578999976554443332 11 26666543 3448999999998776666
Q ss_pred eEEEEEEE
Q psy15734 264 GFIKVYVN 271 (314)
Q Consensus 264 ~~~~l~V~ 271 (314)
..+.|+-.
T Consensus 98 ~~IeLk~~ 105 (286)
T PHA03042 98 NTIELQYV 105 (286)
T ss_pred EEEEEEEE
Confidence 66666443
No 376
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.71 E-value=0.018 Score=38.61 Aligned_cols=69 Identities=7% Similarity=0.195 Sum_probs=38.2
Q ss_pred cCCcEEEEEEecCC--CceEEEEEEcCceeEEEe--eeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecCC
Q psy15734 35 VGKEALMACVVENL--REYKVAWVKMITQTILSI--HHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVP 110 (314)
Q Consensus 35 ~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 110 (314)
.++.++|.|.+.+. ....|.|.+++.. .... .......++.+.... .|.+..-.-.....|+|.+.+.+
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s------~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASS------QLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEE------EEEEeHHHcCCCCcEEEEEEeCC
Confidence 45679999999884 3478999995432 1110 001111133343322 45555433223567999997643
No 377
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.67 E-value=0.013 Score=39.09 Aligned_cols=71 Identities=8% Similarity=0.124 Sum_probs=40.2
Q ss_pred eecCccEEEEEEEee-cCC--ceeEEecCCCeeeecCCceeeeEee-CCeeeEEEEEEeecCCCCCe-EEEEEEeeCCC
Q psy15734 187 AFVSQTVELHCHTEA-FPA--SLNYWTNEKGDMIITGDDYEDSRLI-NGYSCHMTLKIRSILSHQFG-SYRCVAVNALG 260 (314)
Q Consensus 187 v~~g~~~~l~C~~~g-~p~--p~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~s~L~i~~~~~~d~G-~Y~C~a~n~~g 260 (314)
+.+|..+++.|.+.+ .|. ..+.|++++ ..+ ....+.-.... ......+.+.+.. ..+|.| +|+|.|.-..+
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~-~~l-~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l~ 87 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGE-TLL-PSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHID 87 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCc-cee-cccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEeec
Confidence 478999999999975 454 577898743 222 22211110000 0001123555555 367777 99999976544
No 378
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.47 E-value=0.016 Score=35.50 Aligned_cols=60 Identities=20% Similarity=0.347 Sum_probs=39.0
Q ss_pred CCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecCCCccee
Q psy15734 36 GKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQK 115 (314)
Q Consensus 36 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~ 115 (314)
.+.|.|.|... ..+.|++ +...... . ..+|.+-+....-.|.|.|.+.+ ....
T Consensus 6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~--------~-----------~~tlnLGs~~~DPRG~Y~C~~s~---~~~~ 58 (69)
T cd07691 6 EGKVFLKCNGA----TNITWKK-GKEILEV--------S-----------NTLLDLGSRINDPRGTYSCKESE---PNKE 58 (69)
T ss_pred CceEEEEecCC----CcEEEec-Ccccccc--------c-----------ccEEeccCcccCCCcceEecCcc---CCCc
Confidence 45799999762 4699999 5432110 0 01677788888889999998754 2344
Q ss_pred EEEEEEe
Q psy15734 116 GYLQVVV 122 (314)
Q Consensus 116 ~~l~v~~ 122 (314)
..|.|+.
T Consensus 59 ~~LQVyY 65 (69)
T cd07691 59 KTLQVYY 65 (69)
T ss_pred EEEEEEE
Confidence 5566654
No 379
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.43 E-value=0.0057 Score=43.05 Aligned_cols=75 Identities=15% Similarity=0.228 Sum_probs=37.2
Q ss_pred EEcCCcEEEEEEecC-----CCceEEEEEEcCceeEEEeeeeee---ecCcCEEEEeCCceeEEEEEeeecCCCCeEEEE
Q psy15734 33 ATVGKEALMACVVEN-----LREYKVAWVKMITQTILSIHHKVV---TQNKRVSITFNDHRSWFLHLRDVQETDRGWYMC 104 (314)
Q Consensus 33 v~~g~~~~l~C~~~~-----~~~~~v~W~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 104 (314)
..-.++|.|+|.+.. .+...|.|..++.......+.... ....+..+..-..+..+|.+...+.- .|+|+|
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC 102 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC 102 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence 345789999999954 245789999955432222211110 01112222111112336888886655 899999
Q ss_pred EEec
Q psy15734 105 QINT 108 (314)
Q Consensus 105 ~~~~ 108 (314)
.+..
T Consensus 103 eVt~ 106 (130)
T PF08204_consen 103 EVTE 106 (130)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9954
No 380
>KOG4597|consensus
Probab=96.24 E-value=0.0066 Score=51.53 Aligned_cols=90 Identities=11% Similarity=-0.041 Sum_probs=65.2
Q ss_pred cCCCcceeecCccEEEEEEEeecCCceeEEecC--CC-eeeecCCceeeeEeeCC-eeeEEEEEEeecCCCCCeEEEEEE
Q psy15734 180 IPNQLEGAFVSQTVELHCHTEAFPASLNYWTNE--KG-DMIITGDDYEDSRLING-YSCHMTLKIRSILSHQFGSYRCVA 255 (314)
Q Consensus 180 ~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~--~~-~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a 255 (314)
.-+....+..+++..++|-+.|.|.+.|+|.+- ++ ...+. .... .++- -+.+..|.|-+....|+|.|+|.+
T Consensus 201 ~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~-~nq~---~e~p~vtstcql~ic~ewq~~a~w~tCs~ 276 (560)
T KOG4597|consen 201 DCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMR-PNQT---VENPVVTSTCQLVICNEWQADAGWYTCSA 276 (560)
T ss_pred cCcchhhcccchhhcccccccCCcCceeeeehhhccccceeec-Cccc---cCCcceeeeeeEEEcchhhcCCCceeecc
Confidence 344555678899999999999999999999652 12 22222 1111 1111 223458999999999999999999
Q ss_pred eeCCCCceeEEEEEEEec
Q psy15734 256 VNALGETDGFIKVYVNLV 273 (314)
Q Consensus 256 ~n~~g~~~~~~~l~V~~~ 273 (314)
.|..|...+.+.+.+...
T Consensus 277 rcg~g~~~rdv~c~s~~g 294 (560)
T KOG4597|consen 277 RCGAGFLRRDVPCSSVKG 294 (560)
T ss_pred ccccceeeccceeeeecc
Confidence 999999999988877543
No 381
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=96.24 E-value=0.0082 Score=47.16 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=39.0
Q ss_pred CCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734 203 PASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNAL 259 (314)
Q Consensus 203 p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~ 259 (314)
..|.+.|..+++..+...... ...+.| .|.+.+....++|.|+|..+-..
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~--nIT~TG-----~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYV--NITETG-----KLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeE--EEccCc-----eEEeeccccccCCceEEEEEEEe
Confidence 468999999877766544433 344566 99999999999999999987654
No 382
>PHA03269 envelope glycoprotein C; Provisional
Probab=95.94 E-value=0.99 Score=39.15 Aligned_cols=173 Identities=15% Similarity=0.195 Sum_probs=85.4
Q ss_pred eeeccCCCCCceecCCcceEEEcCCcEEEEEEecCC-C--ceEEEEEEcCceeEEEeee---eeeecCcCEEEEeCCcee
Q psy15734 13 KTKCEKPDMPRFAEPVANVTATVGKEALMACVVENL-R--EYKVAWVKMITQTILSIHH---KVVTQNKRVSITFNDHRS 86 (314)
Q Consensus 13 ~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-~--~~~v~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 86 (314)
...+....+|.+... ...+.+|+...-.|.+..+ | ...+.|+++++ .+..... .....++.++..
T Consensus 321 ~VtV~~yr~PsVsV~--p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~-~V~~~~it~t~~~~~dGlFSrV------ 391 (566)
T PHA03269 321 HITVMSYKRPNITVI--GDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFG-NIGKNFITDAIKENADGLFSSV------ 391 (566)
T ss_pred EEEEEEecCCCcccc--CCccccCCCceEEEEeeeecCCCceEEEEEeCCc-ccCccccccceeecCCCceEEE------
Confidence 333445566654433 3457889999999999663 3 36899999643 3321100 001112222211
Q ss_pred EEEEEeeecCCC--CeEEEEEEec-C-CCc----ceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCC--Cc
Q psy15734 87 WFLHLRDVQETD--RGWYMCQINT-V-PMT----SQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPE--PY 156 (314)
Q Consensus 87 ~~L~i~~~~~~d--~G~Y~C~~~~-~-~~~----~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--p~ 156 (314)
++|.+......| .-+.+|.+.- . +.. +..+.-.|+.+|.+.. ....|.- .|.+...|. ..
T Consensus 392 STLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtISm-------~FedG~A---VCtA~CVP~~~V~ 461 (566)
T PHA03269 392 SALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVSI-------EIIDGHI---VCLAKCVPRGVVH 461 (566)
T ss_pred EEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCeEEE-------EEeCCEE---EEecccccCCCce
Confidence 145443322222 2356999832 2 111 1222334444554432 2333433 477777665 37
Q ss_pred eEEEcCCCceeecCCeeC------CCeEEcCCCcceeecCccEEEEEEEeecCC
Q psy15734 157 VAWRREDGKAINYNGELV------PPMLTIPNQLEGAFVSQTVELHCHTEAFPA 204 (314)
Q Consensus 157 ~~W~~~~~~~~~~~~~~~------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~ 204 (314)
+.|.-+|+.....+.... |-...+.+..-.-.....+.-+|...|+|.
T Consensus 462 l~WlVgD~p~~~~~t~itG~C~ehPGLVNLRS~~pLS~~dgpveYTCrL~GYP~ 515 (566)
T PHA03269 462 FNWWINDIPIEHENSEILGVCDNNKRFVNLQSSCDTSELDGPITYSCHLDGYPK 515 (566)
T ss_pred EEEEecCCCCCCccceeeccCCCCCCceeecccccccccCCceeEEEEEeecCC
Confidence 999985544212111111 222222221111123356899999999986
No 383
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.75 E-value=0.016 Score=45.59 Aligned_cols=48 Identities=23% Similarity=0.349 Sum_probs=36.1
Q ss_pred CceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEec
Q psy15734 49 REYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINT 108 (314)
Q Consensus 49 ~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 108 (314)
-+|.+.|...++.. ...+.++.++..+ .|.+.+.+.+++|.|+|....
T Consensus 11 iDP~y~W~GP~g~~--------l~gn~~~nIT~TG----~L~~~~F~esmSG~YTCtLsY 58 (271)
T PF07354_consen 11 IDPTYLWTGPNGKP--------LSGNSYVNITETG----KLMFKNFQESMSGSYTCTLSY 58 (271)
T ss_pred CCCceEEECCCCcc--------cCCCCeEEEccCc----eEEeeccccccCCceEEEEEE
Confidence 45789999866553 2344566666543 799999999999999999853
No 384
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=95.68 E-value=0.22 Score=32.02 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=23.7
Q ss_pred EEEEeecCCCCCeEEEEEE-eeCCCCceeEEEEEE
Q psy15734 237 TLKIRSILSHQFGSYRCVA-VNALGETDGFIKVYV 270 (314)
Q Consensus 237 ~L~i~~~~~~d~G~Y~C~a-~n~~g~~~~~~~l~V 270 (314)
.+.......+|+|.+.|.| .+........+.|.|
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 5667788889999999999 555444444444443
No 385
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=95.62 E-value=0.087 Score=34.61 Aligned_cols=73 Identities=8% Similarity=0.187 Sum_probs=48.3
Q ss_pred cEEEEEE-EeecCCceeEEecCC-CeeeecCCceeee-EeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEE
Q psy15734 192 TVELHCH-TEAFPASLNYWTNEK-GDMIITGDDYEDS-RLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKV 268 (314)
Q Consensus 192 ~~~l~C~-~~g~p~p~~~W~~~~-~~~~~~~~~~~~~-~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 268 (314)
.+.-.|. +.|.|++.|.|.-+= |.. ..... ..++..+..+.+.+-.....|.-..+|.+......-..++.|
T Consensus 22 v~VA~CiSa~GrPpa~ItW~t~l~G~~-----etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L 96 (98)
T cd05890 22 MLVATCVSANGKPPSVVRWDTRLKGEA-----EFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTL 96 (98)
T ss_pred EEEEEEEcCCCcCCcEeEEEccCCCce-----eeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEe
Confidence 4566797 689999999998541 111 11111 122235667788888888889889999998875544555555
Q ss_pred E
Q psy15734 269 Y 269 (314)
Q Consensus 269 ~ 269 (314)
.
T Consensus 97 ~ 97 (98)
T cd05890 97 N 97 (98)
T ss_pred c
Confidence 4
No 386
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=95.51 E-value=0.085 Score=35.22 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=21.4
Q ss_pred EEcCCcEEEEEEecC-CCc--eEEEEEEcC
Q psy15734 33 ATVGKEALMACVVEN-LRE--YKVAWVKMI 59 (314)
Q Consensus 33 v~~g~~~~l~C~~~~-~~~--~~v~W~~~~ 59 (314)
+.+|..+++.|.+.+ +|. ..+.|++.+
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~ 41 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGE 41 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCc
Confidence 478999999999975 343 789999843
No 387
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=95.42 E-value=0.28 Score=33.06 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=26.9
Q ss_pred cCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecCCCcceeEE
Q psy15734 75 KRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGY 117 (314)
Q Consensus 75 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 117 (314)
.|+.+...+. +|.|..+++.|+|.|...+.+..+......
T Consensus 62 ~r~~F~~enl---aLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~ 101 (108)
T PF11465_consen 62 NRFNFTSENL---ALLIKAAQPQDSGLYCLEVTNESGKVCTKN 101 (108)
T ss_dssp HHEEEETTTT---EEEESS-SGGG-EEEEEEEEETTSCEEEEE
T ss_pred ceEeeeccCc---eEEEeecCcccCceEEEEEEcCCCcEEEEE
Confidence 4666655443 899999999999999999976544433333
No 388
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=95.14 E-value=5.7 Score=42.63 Aligned_cols=245 Identities=11% Similarity=0.003 Sum_probs=134.1
Q ss_pred CCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEE
Q psy15734 27 PVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI 106 (314)
Q Consensus 27 ~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 106 (314)
......+..|+.+.|.-.........+.|...++.... ..+..+ .-+-...|.|.-.+
T Consensus 1703 ~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~-------~s~p~~---------------tHtf~~~G~y~VtV 1760 (2740)
T TIGR00864 1703 QASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLE-------TSEPFM---------------SHSFPSAGLHLVTM 1760 (2740)
T ss_pred eccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcc-------cCCCce---------------EEEccCCceEEEEE
Confidence 33444566788899887776667789999986643110 011111 11224457777775
Q ss_pred --ecC-CCcceeEEEEEEeCCceeeecCc---ceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCeeC------
Q psy15734 107 --NTV-PMTSQKGYLQVVVPPRILLDRTS---TDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELV------ 174 (314)
Q Consensus 107 --~~~-~~~~~~~~l~v~~~p~~~~~~~~---~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~~------ 174 (314)
.|. +.......+.|+.+..-...... ....+..|..+.|.-.+.....-...|...++....-.....
T Consensus 1761 ta~N~vss~~~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~gk~v~~Tf~~aG 1840 (2740)
T TIGR00864 1761 KAFNELGSANASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKMGKHACMTFPDAG 1840 (2740)
T ss_pred EEEccccccceeEEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCccccceeEEecCCCe
Confidence 333 44445566777765542222111 111345577777766643222336777764443221111000
Q ss_pred -------------------------CC-eEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEe
Q psy15734 175 -------------------------PP-MLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRL 228 (314)
Q Consensus 175 -------------------------~p-~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~ 228 (314)
+. .+........+..|+.++|.+.+...+...+.|..+++..........+.
T Consensus 1841 ~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t~~~t~~-- 1918 (2740)
T TIGR00864 1841 TFAIRLNASNAVSGKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQPGPRFS-- 1918 (2740)
T ss_pred EEEEEEEEEcccCcceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeecCCCeEE--
Confidence 11 12222344467789999999998887788889998766544321111111
Q ss_pred eCCeeeEEEEEEeecCCCCCeEE--EEEEeeCCCCceeEEEEEEEecCCCeeEEEEc-----cccccEeEEEEEeeccCC
Q psy15734 229 INGYSCHMTLKIRSILSHQFGSY--RCVAVNALGETDGFIKVYVNLVDGDIFQIRKM-----SRLHMGAYLCIASNGVVP 301 (314)
Q Consensus 229 ~~~~~~~s~L~i~~~~~~d~G~Y--~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~-----~~~~~g~~~C~a~~~~~~ 301 (314)
. ...-.|.| +-.|.|..+.....+.+.|..+- ..+.|... ..+....|+-.....-+-
T Consensus 1919 ------------H--sY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V-~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V 1983 (2740)
T TIGR00864 1919 ------------H--SFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAV-RGLQIPDCCAAGIATGEEKNFTANVQRGKPV 1983 (2740)
T ss_pred ------------e--ecCCCCcEEEEEEEEeccceeeeeEEEEEEEec-cceEecCCcccceecCceEEEEEEEecCCce
Confidence 0 11123444 44667888888888877776552 33544332 334445577777766666
Q ss_pred CccceEEEE
Q psy15734 302 SVSHRIMVT 310 (314)
Q Consensus 302 ~~~w~v~l~ 310 (314)
.+.|.+.|.
T Consensus 1984 ~f~W~f~~~ 1992 (2740)
T TIGR00864 1984 AFAWTFDLH 1992 (2740)
T ss_pred EEEEEeeec
Confidence 788887765
No 389
>PHA03270 envelope glycoprotein C; Provisional
Probab=95.05 E-value=1.6 Score=37.28 Aligned_cols=169 Identities=15% Similarity=0.200 Sum_probs=79.7
Q ss_pred cCCCCCceecCCcceEEEcCCcEEEEEEecCC-C--ceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCce-eEEEEEe
Q psy15734 17 EKPDMPRFAEPVANVTATVGKEALMACVVENL-R--EYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHR-SWFLHLR 92 (314)
Q Consensus 17 ~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~i~ 92 (314)
....+|.+... ...+.+|+...-.|.+..+ | ...+.||+++.. +...... +.......++.. ..+|.+.
T Consensus 217 ~~yr~Psvsv~--~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~-V~~~~~i----~~~~~~~~dGfs~vStvtse 289 (466)
T PHA03270 217 RMFRRPSLSIR--PHAVLEGEPFGATCVAANYYPGDRAAFRWFEGGDE-VFAPERV----RTRVDAQRDGFSATSTLTSE 289 (466)
T ss_pred EEecCCccccc--CCccccCCCceEEEEeeeecCCCceEEEEEeCCcc-ccCccee----eeeeEecCCCeeEEEEEecc
Confidence 34455664433 3346789999999999663 3 368999996543 2110000 001111111100 1134333
Q ss_pred eecCC-CCeEEEEEEec-C-CCc----ceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCC-CceEEEcCCC
Q psy15734 93 DVQET-DRGWYMCQINT-V-PMT----SQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPE-PYVAWRREDG 164 (314)
Q Consensus 93 ~~~~~-d~G~Y~C~~~~-~-~~~----~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-p~~~W~~~~~ 164 (314)
..... ..=+.+|.+.- . ... +....-.|+.+|.+.. ....|.- .|.+...|. ..+.|.-.|+
T Consensus 290 a~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Isv-------~F~dG~A---VCtA~CVPegV~l~W~V~D~ 359 (466)
T PHA03270 290 ARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEM-------EFGGDEA---VCTAACVPEGVTLAWLLGAD 359 (466)
T ss_pred ccccCCCCCCceEEEEEccCCccceeecccccCccccCCeEEE-------EEeCCEE---EEeccccCCCCEEEEEecCC
Confidence 32211 11368999832 1 111 2222334444444432 2333333 476666553 3899998554
Q ss_pred ceeecCCeeC-------CCeEEcCCCcceeecCccEEEEEEEeecCC
Q psy15734 165 KAINYNGELV-------PPMLTIPNQLEGAFVSQTVELHCHTEAFPA 204 (314)
Q Consensus 165 ~~~~~~~~~~-------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~ 204 (314)
..-..+.... |-...+.+. ..+.. +.+.-+|...|+|.
T Consensus 360 ~~pa~~~~v~~G~C~~~PGlvNlrS~-~plSd-~~~eYTCrl~GYP~ 404 (466)
T PHA03270 360 PAPAEKAAVAGGPCPGRPGLARVRSA-LPLSR-EHSEYTCRLVGYPA 404 (466)
T ss_pred CCCCccceeecccCCCCCCceeeecc-ccccc-CCceEEEEEeecCC
Confidence 3311111110 222222221 12222 35799999999986
No 390
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=95.03 E-value=0.05 Score=47.37 Aligned_cols=146 Identities=14% Similarity=0.174 Sum_probs=44.4
Q ss_pred EEEEeeecCCCCeEEEEEEecCCCccee--EEEEEEeCCcee--------e----------ecCcceeEEecCceEEEEE
Q psy15734 88 FLHLRDVQETDRGWYMCQINTVPMTSQK--GYLQVVVPPRIL--------L----------DRTSTDVVVREGTEVTLEC 147 (314)
Q Consensus 88 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~--~~l~v~~~p~~~--------~----------~~~~~~~~~~~g~~~~l~C 147 (314)
.|.|.+++..|+|.|+-...+....... +.|.|..+.... . ...........|+++.+.-
T Consensus 90 ~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~~v 169 (439)
T PF02480_consen 90 GLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHLSV 169 (439)
T ss_dssp --------------------------------------------------------SEEEEEE--SEEE--TT--EE---
T ss_pred ceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEEeE
Confidence 6999999999999999998654433322 344443311110 0 0112334566899888776
Q ss_pred Eeccc--C-C---CceEEEcCCC----ceeecCCeeC--------------CCeEEcCCCcceeecCccEEEEEEEee--
Q psy15734 148 SAVGY--P-E---PYVAWRREDG----KAINYNGELV--------------PPMLTIPNQLEGAFVSQTVELHCHTEA-- 201 (314)
Q Consensus 148 ~~~~~--p-~---p~~~W~~~~~----~~~~~~~~~~--------------~p~~~~~~~~~~v~~g~~~~l~C~~~g-- 201 (314)
..... . . ..+.|+..+- ..+.....-. ...|..+ .....++......|...+
T Consensus 170 ~l~~~~~d~~~f~~~i~W~~~~~~~~C~~~riYE~CifHP~~p~Cl~P~~~~C~f~s~--~~a~~~~~~~y~~C~~~~~~ 247 (439)
T PF02480_consen 170 HLQSEAHDDPPFSLEIDWYYMPTDPSCAEMRIYEPCIFHPHAPECLHPADARCSFASP--LRAERLASRRYANCSPSGWP 247 (439)
T ss_dssp EEEEEESSS--EEEEEEEEEE---TT-SEEEEEHHHHH-TTSHHHHS-TTGGGEES------SS-SEEEEEEEEBTTC-T
T ss_pred EEEeccCCCCCeeEEEEEEEecCCCCCceEEEeeecccCCCCccccCCCCCCceeecc--hhHHHHHHHhhcCCCCCCCc
Confidence 65432 2 2 2789997321 1111100000 1122211 123456777888887754
Q ss_pred ---------cCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEee
Q psy15734 202 ---------FPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN 257 (314)
Q Consensus 202 ---------~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n 257 (314)
.+.+.+.|..+ + ..|++.++...++|.|.|++.-
T Consensus 248 ~~C~~~~~~~~~~~~~~~~~------------------~----~~l~f~~a~~~~sGLYv~V~~~ 290 (439)
T PF02480_consen 248 RRCPSTSHIEPVPGLRWASN------------------G----VDLQFTNAPESASGLYVFVVYY 290 (439)
T ss_dssp TTTEEEEEE---TTEEE-TT------------------S----SSEEESS--GGG-EEEEEEEEE
T ss_pred CCCCchhccCcCccccccCC------------------C----cceEecCCCcccCceEEEEEEE
Confidence 22223333311 1 2899999999999999998864
No 391
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=94.90 E-value=6.7 Score=42.18 Aligned_cols=210 Identities=12% Similarity=0.086 Sum_probs=112.5
Q ss_pred CCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEE
Q psy15734 27 PVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI 106 (314)
Q Consensus 27 ~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 106 (314)
......+..|+.++|.+.+.......+.|...++..... ..+..+.. +-.-.|.|.-.+
T Consensus 1873 ~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~------t~~~t~~H---------------sY~~~G~Y~VtV 1931 (2740)
T TIGR00864 1873 KASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVL------QPGPRFSH---------------SFPRVDDHMVNL 1931 (2740)
T ss_pred ecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceee------cCCCeEEe---------------ecCCCCcEEEEE
Confidence 344556778999999999876677899998866543221 11111111 112335555554
Q ss_pred --ecC-CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcC-----CCceeecCCeeC----
Q psy15734 107 --NTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRRE-----DGKAINYNGELV---- 174 (314)
Q Consensus 107 --~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~-----~~~~~~~~~~~~---- 174 (314)
.|. +.......+.|.++-.-..+.......+..|+...+.-.+....+..+.|+.. ++......++..
T Consensus 1932 ~A~N~Vs~~~a~~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~~~~~G~~vty~~ 2011 (2740)
T TIGR00864 1932 RAKNEVSCAQANLHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSLVIHMGKDVSYTA 2011 (2740)
T ss_pred EEEeccceeeeeEEEEEEEeccceEecCCcccceecCceEEEEEEEecCCceEEEEEeeecccCCCcceeecCCceEEcc
Confidence 232 33444455566555332222211111256788888888776544556888742 122211111111
Q ss_pred ---------------------CCeEEc---------CCCcceeecCccEEEEEEEeecCC-ceeEEecCCCeeeecCCce
Q psy15734 175 ---------------------PPMLTI---------PNQLEGAFVSQTVELHCHTEAFPA-SLNYWTNEKGDMIITGDDY 223 (314)
Q Consensus 175 ---------------------~p~~~~---------~~~~~~v~~g~~~~l~C~~~g~p~-p~~~W~~~~~~~~~~~~~~ 223 (314)
+-.+.. .........+..+.|.|.+...+. ..+.|-++|+.........
T Consensus 2012 ~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i~~~~L~~~p~~~~~n~~v~f~~~~~~~~~~v~~~WDFGDGt~~~~T~~~ 2091 (2740)
T TIGR00864 2012 EAAGLLEIQLGAFNALGAENITLQLEAQDALMDAALQAGPQDCFTNKMAQFEAATSPKPNFMACHWDFGDGSAGQDTDEP 2091 (2740)
T ss_pred CCCcEEEEEEEEEcccCcccccEEEEEEeheeeEEEeecCcceecCceEEEEEEEccCCCcEEEEEEecCCCCccccCCc
Confidence 111111 111223456889999999876554 4778999877654432222
Q ss_pred eeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE--eeCCCCceeEEEEEEEec
Q psy15734 224 EDSRLINGYSCHMTLKIRSILSHQFGSYRCVA--VNALGETDGFIKVYVNLV 273 (314)
Q Consensus 224 ~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a--~n~~g~~~~~~~l~V~~~ 273 (314)
+..+. ....|.|.-++ .|..........+.|+.+
T Consensus 2092 ~~sHt----------------Y~r~G~Y~V~V~a~N~VS~~~a~~~i~V~vl 2127 (2740)
T TIGR00864 2092 RAEHE----------------YLHPGDYRVQVNASNLVSFFSAHAEINVQVL 2127 (2740)
T ss_pred eeEEE----------------ecCCccEEEEEEEEcceeeeeeEEEEEEEEe
Confidence 22111 12348787654 577777667777766654
No 392
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=94.34 E-value=2.9 Score=35.48 Aligned_cols=126 Identities=17% Similarity=0.278 Sum_probs=71.8
Q ss_pred CCcceEEEcCCcEEEEEEecC---CCceEEEEEEcCcee---EEEeeeee-----eecCcCEEEEe-----CCceeEEEE
Q psy15734 27 PVANVTATVGKEALMACVVEN---LREYKVAWVKMITQT---ILSIHHKV-----VTQNKRVSITF-----NDHRSWFLH 90 (314)
Q Consensus 27 ~~~~~~v~~g~~~~l~C~~~~---~~~~~v~W~~~~~~~---~~~~~~~~-----~~~~~~~~~~~-----~~~~~~~L~ 90 (314)
+.+.+.+..|..+.|.|..+- ..-....|+..+-+. +-...... ...+..+.+.. .+....+|+
T Consensus 270 ~~~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLT 349 (500)
T PHA02914 270 KFDEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLT 349 (500)
T ss_pred ccceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEE
Confidence 356778888999999999853 334578898744221 11111111 11122222221 334456899
Q ss_pred EeeecCCCCeEEEEEEecCCCcce--eEEEEEEeCCceeeecCcceeEEecCc-eEEEEEEeccc--CCCceEEEc
Q psy15734 91 LRDVQETDRGWYMCQINTVPMTSQ--KGYLQVVVPPRILLDRTSTDVVVREGT-EVTLECSAVGY--PEPYVAWRR 161 (314)
Q Consensus 91 i~~~~~~d~G~Y~C~~~~~~~~~~--~~~l~v~~~p~~~~~~~~~~~~~~~g~-~~~l~C~~~~~--p~p~~~W~~ 161 (314)
|.+++.+++|.|.|.+..+ ...+ ...|.|.....+.+. .+|. .....|-+-.+ .++.+.|..
T Consensus 350 Ikka~I~N~GCY~~~a~~g-~~~~ec~~Cl~V~d~V~f~W~--------~e~~n~T~V~Cyv~sy~~kp~si~wkv 416 (500)
T PHA02914 350 IKKAHINNAGCYEAQAFMG-KFKEECRHCFKVADHVFFKWN--------TEGDNETKVACYAAQYDMQPFSILWKS 416 (500)
T ss_pred eeeEEEEcCCceEEEEecC-cchhhhhhheEeccEEEEEEE--------eccCceEEEEEEEEecccCCceeEEEE
Confidence 9999999999999999543 2222 233554433333332 1333 33457876554 345688887
No 393
>PHA03282 envelope glycoprotein E; Provisional
Probab=94.27 E-value=1.4 Score=38.10 Aligned_cols=21 Identities=29% Similarity=0.437 Sum_probs=19.2
Q ss_pred EEEEeecCCCCCeEEEEEEee
Q psy15734 237 TLKIRSILSHQFGSYRCVAVN 257 (314)
Q Consensus 237 ~L~i~~~~~~d~G~Y~C~a~n 257 (314)
.|.+.++..+++|.|.|++.-
T Consensus 334 dL~F~nAp~saSGLYVfVl~y 354 (540)
T PHA03282 334 NLQLRDASEASGGLYVCVVYV 354 (540)
T ss_pred ceEecCCCcccCceEEEEEEE
Confidence 899999999999999998863
No 394
>KOG1480|consensus
Probab=94.19 E-value=0.022 Score=51.54 Aligned_cols=73 Identities=18% Similarity=0.299 Sum_probs=50.9
Q ss_pred eecCCcceEEEcCCcEEEEEEe-cCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEE
Q psy15734 24 FAEPVANVTATVGKEALMACVV-ENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWY 102 (314)
Q Consensus 24 ~~~~~~~~~v~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 102 (314)
|...+....|..+..+.|.|.. .+.+...+.|++++ ..+ .++..+....+ ..|.+..+++.|.|+|
T Consensus 132 f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e-~~~--------~pd~n~~~~~d----~~li~~~arlsd~~ny 198 (909)
T KOG1480|consen 132 FEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNE-VVI--------DPDANVIRASD----HNLIISQARLSDSGNY 198 (909)
T ss_pred hccChhhheecccccccccccCcccchhhhhhccccC-CCC--------Cccccchhhhc----CCccccchhhhhcccc
Confidence 3445666778888999999987 56788899999954 221 11222221111 1599999999999999
Q ss_pred EEEEecC
Q psy15734 103 MCQINTV 109 (314)
Q Consensus 103 ~C~~~~~ 109 (314)
+|.+.+.
T Consensus 199 tc~a~ni 205 (909)
T KOG1480|consen 199 TCEATNI 205 (909)
T ss_pred eeeeehh
Confidence 9999764
No 395
>PHA03271 envelope glycoprotein C; Provisional
Probab=93.92 E-value=3.6 Score=35.12 Aligned_cols=158 Identities=14% Similarity=0.145 Sum_probs=75.2
Q ss_pred eEEEcCCcEEEEEEecCC-C--ceEEEEEEcCceeEEEeeeeeeecCcCEEEEeC-Cc--eeEEEEEeeecCCCCeEEEE
Q psy15734 31 VTATVGKEALMACVVENL-R--EYKVAWVKMITQTILSIHHKVVTQNKRVSITFN-DH--RSWFLHLRDVQETDRGWYMC 104 (314)
Q Consensus 31 ~~v~~g~~~~l~C~~~~~-~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~L~i~~~~~~d~G~Y~C 104 (314)
..+.+|+...-.|.+..+ | ...+.|++++.. ..... ..+...-.... +. ...+|.+.+...+..=+.+|
T Consensus 255 ~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~-V~~~~----~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRC 329 (490)
T PHA03271 255 PPVLSGENYKASCIVRHFYPPGSVYVSWRQNGNI-ATPRK----DRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISC 329 (490)
T ss_pred CccccCCCceEEEEeeeecCCCceEEEEEeCCcc-ccCcc----ccceeEEEecCCCceeEEEEEEcccccCCCCCCceE
Confidence 346789999999999763 3 368999996533 21110 00111000000 00 01134443332233347999
Q ss_pred EEec-CC-Cc---ceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCC-CceEEEcCCCceeec--CCeeC--
Q psy15734 105 QINT-VP-MT---SQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPE-PYVAWRREDGKAINY--NGELV-- 174 (314)
Q Consensus 105 ~~~~-~~-~~---~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-p~~~W~~~~~~~~~~--~~~~~-- 174 (314)
.+.- .. .. ++.+.-.|+.+|.+. +....|.- .|.+...|. ..+.|.-.|+..-.. +....
T Consensus 330 eV~W~rd~v~s~rnAaatP~VY~~P~IS-------v~FedG~A---VCtA~CVP~gV~lrWlVgD~p~pn~t~d~~itGv 399 (490)
T PHA03271 330 LVAWKQGDMISTTNATAIPTVYHHPRIS-------LAFKDGYA---ICTIECVPSGITVRWLVHDEPQPNTTYDTVVTGL 399 (490)
T ss_pred EEEEccCCceeeeecccCCccccCCeEE-------EEEeCCEE---EEeccccCCCcEEEEEecCCCCCCcccccccccc
Confidence 9832 22 11 111122333333332 22333443 376665543 489999855432111 11111
Q ss_pred ----CCeEEcCCCcceee-cCccEEEEEEEeecCC
Q psy15734 175 ----PPMLTIPNQLEGAF-VSQTVELHCHTEAFPA 204 (314)
Q Consensus 175 ----~p~~~~~~~~~~v~-~g~~~~l~C~~~g~p~ 204 (314)
|-...+.+. ..+. .++.+.-+|...|+|.
T Consensus 400 C~erPGlVNLrS~-lPlSd~dgpveYTCrL~GYP~ 433 (490)
T PHA03271 400 CRTIDRHRNLISR-IPVQDNWQKTKYTCRLIGYPF 433 (490)
T ss_pred cCCCCCceeeecc-CCchhcCCceeEEEEEeecCC
Confidence 222222222 1222 3467999999999986
No 396
>PHA03042 CD47-like protein; Provisional
Probab=93.80 E-value=0.75 Score=36.70 Aligned_cols=58 Identities=19% Similarity=0.319 Sum_probs=36.0
Q ss_pred EcCCcEEEEEEecCC-----CceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEec
Q psy15734 34 TVGKEALMACVVENL-----REYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINT 108 (314)
Q Consensus 34 ~~g~~~~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 108 (314)
.-.+++.++|.+... ....+.|..++ ..+... ++. +..+|.+.... .=.|+|+|.+.+
T Consensus 29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~-~~If~~-------n~t--------n~aSL~~~f~~-~l~GNYTCEv~~ 91 (286)
T PHA03042 29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNN-KVIFKK-------NNT--------NTSSLKFNFSK-NLSGNYTCEAIN 91 (286)
T ss_pred ecCceEEEEeecCChhhcCccceEEEEEeCC-eeEEEe-------cCC--------cceEEEEeccc-cCCCceeEEEee
Confidence 347899999998542 45789999954 333211 111 11256666543 347999999954
No 397
>PHA03283 envelope glycoprotein E; Provisional
Probab=93.78 E-value=1 Score=39.42 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=45.6
Q ss_pred EEEEeeecCCCCeEEEEEEecCCCcce-eEEEEEEeCCceeee---------c----------CcceeEEecCceEEEEE
Q psy15734 88 FLHLRDVQETDRGWYMCQINTVPMTSQ-KGYLQVVVPPRILLD---------R----------TSTDVVVREGTEVTLEC 147 (314)
Q Consensus 88 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~l~v~~~p~~~~~---------~----------~~~~~~~~~g~~~~l~C 147 (314)
.|.|.+++..|+|.|+-..++++.... .+.|.|..++..... + .-.......|+++.+.-
T Consensus 135 ~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~lsi 214 (542)
T PHA03283 135 VLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDLSV 214 (542)
T ss_pred eeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeEeE
Confidence 699999999999999999876554322 234555442111100 0 01223467899888866
Q ss_pred Eeccc--C---CCceEEEcC
Q psy15734 148 SAVGY--P---EPYVAWRRE 162 (314)
Q Consensus 148 ~~~~~--p---~p~~~W~~~ 162 (314)
..... . ...+.|+..
T Consensus 215 ~l~s~~~d~~fs~~i~Wyy~ 234 (542)
T PHA03283 215 HLESDIGDPSFSATIDWYYM 234 (542)
T ss_pred EEeeccCCCCceEEEEEEEe
Confidence 55432 2 237899974
No 398
>PHA03286 envelope glycoprotein E; Provisional
Probab=93.23 E-value=1.9 Score=37.05 Aligned_cols=75 Identities=11% Similarity=-0.033 Sum_probs=45.9
Q ss_pred EEEEeeecCCCCeEEEEEEecCCCcce--eEEEEEEeC----C-cee--ee----------cCcceeEEecCceEEEEEE
Q psy15734 88 FLHLRDVQETDRGWYMCQINTVPMTSQ--KGYLQVVVP----P-RIL--LD----------RTSTDVVVREGTEVTLECS 148 (314)
Q Consensus 88 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~l~v~~~----p-~~~--~~----------~~~~~~~~~~g~~~~l~C~ 148 (314)
.|.|.|++..++|.|+-..+++.+... .+.|.|... + ... .. ..........|+++.+.-.
T Consensus 128 ~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vSv~ 207 (492)
T PHA03286 128 ELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDASVT 207 (492)
T ss_pred ceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEEEE
Confidence 699999999999999999876643333 334455311 1 111 11 1123345678999877765
Q ss_pred ecc-c-C---CCceEEEcC
Q psy15734 149 AVG-Y-P---EPYVAWRRE 162 (314)
Q Consensus 149 ~~~-~-p---~p~~~W~~~ 162 (314)
... . . ...+.|+..
T Consensus 208 l~~~~~d~~Fsl~i~W~y~ 226 (492)
T PHA03286 208 AHLTNWAGAFSLEFRVLFL 226 (492)
T ss_pred EeecccCCCceEEEEEEEe
Confidence 542 1 1 337999974
No 399
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=93.21 E-value=0.56 Score=39.03 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=22.6
Q ss_pred CCeEEcCCCcceeecCccEEEEEEEeecCCc--eeEEecC
Q psy15734 175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPAS--LNYWTNE 212 (314)
Q Consensus 175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p--~~~W~~~ 212 (314)
||.+.+..... .+ .++|+|.|.|+-+. .+.|.++
T Consensus 203 pP~V~Vt~k~~---~~-~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 203 TPTVKVTGEEL---GD-NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CCceEEecccC---CC-CceEEEEEEeEeCCccEEEEEec
Confidence 66655533311 22 68999999997665 5579997
No 400
>KOG4597|consensus
Probab=93.21 E-value=0.19 Score=43.06 Aligned_cols=92 Identities=13% Similarity=0.142 Sum_probs=58.9
Q ss_pred ceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEc--CceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734 23 RFAEPVANVTATVGKEALMACVVENLREYKVAWVKM--ITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG 100 (314)
Q Consensus 23 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 100 (314)
.+..-+....+..|++..+.|.+.|.+.+.|+|-+. +++.+.-.... . -++..+. +...|.|.|....|+|
T Consensus 198 ~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq-~--~e~p~vt----stcql~ic~ewq~~a~ 270 (560)
T KOG4597|consen 198 ALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQ-T--VENPVVT----STCQLVICNEWQADAG 270 (560)
T ss_pred ccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCcc-c--cCCccee----eeeeEEEcchhhcCCC
Confidence 344456677888999999999999999999999653 22221110000 0 0111111 2247999999999999
Q ss_pred EEEEEEecC-CCcceeEEEEEE
Q psy15734 101 WYMCQINTV-PMTSQKGYLQVV 121 (314)
Q Consensus 101 ~Y~C~~~~~-~~~~~~~~l~v~ 121 (314)
.|+|.+.+. +...+.+.+.+.
T Consensus 271 w~tCs~rcg~g~~~rdv~c~s~ 292 (560)
T KOG4597|consen 271 WYTCSARCGAGFLRRDVPCSSV 292 (560)
T ss_pred ceeeccccccceeeccceeeee
Confidence 999999764 334444444443
No 401
>PHA03273 envelope glycoprotein C; Provisional
Probab=92.92 E-value=5.8 Score=34.46 Aligned_cols=171 Identities=18% Similarity=0.241 Sum_probs=84.4
Q ss_pred cCCCCCceecCCcceEEEcCCcEEEEEEecCC-C--ceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCc--eeEEEEE
Q psy15734 17 EKPDMPRFAEPVANVTATVGKEALMACVVENL-R--EYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDH--RSWFLHL 91 (314)
Q Consensus 17 ~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~i 91 (314)
....+|.+... ...+.+|+...-.|.+..+ | ...+.|++++. .+..... . ........++. ...+|.+
T Consensus 233 ~~yr~Psvsv~--~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~-~V~~~~~---~-~~~~~~~~~gl~T~vStlt~ 305 (486)
T PHA03273 233 STYNAPLVDLS--VHPSLKGENYRAVCVVASYFPHSSVKLRWYKNAK-EVDFTKY---V-TNASSVWVDGLITRISTLSI 305 (486)
T ss_pred EEecCCccccc--CCccccCCCceEEEEeeeecCCCceEEEEEeCCe-ecccccc---c-eeeEEEecCCceEEEEEEec
Confidence 33556665433 3447889999999999663 3 36899999654 3221000 0 00111111111 1124554
Q ss_pred eeecC-CCCeEEEEEEec-C-CCcc----eeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCC--CceEEEcC
Q psy15734 92 RDVQE-TDRGWYMCQINT-V-PMTS----QKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPE--PYVAWRRE 162 (314)
Q Consensus 92 ~~~~~-~d~G~Y~C~~~~-~-~~~~----~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--p~~~W~~~ 162 (314)
..... +-.=+.+|.+.- . .... ..+.-.|+.+|.+.. ....|.- .|.+...|. ..+.|.-.
T Consensus 306 ~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is~-------~F~~G~A---VCtA~CVP~egV~l~W~v~ 375 (486)
T PHA03273 306 PVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVSV-------TVEDGDA---VCTAKCVPSTGVFVSWSVN 375 (486)
T ss_pred cCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEEE-------EEeCCEE---EEecccccCCCeeEEEEcc
Confidence 44322 233478999832 1 1111 122233444444432 2333333 487777765 58999986
Q ss_pred CCceeecC-CeeC------CCeEEcCCCcceeecCccEEEEEEEeecCC
Q psy15734 163 DGKAINYN-GELV------PPMLTIPNQLEGAFVSQTVELHCHTEAFPA 204 (314)
Q Consensus 163 ~~~~~~~~-~~~~------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~ 204 (314)
|..+.... .... |-...+.+..-.-.....+.-+|...|+|.
T Consensus 376 D~~p~a~~~~~~tG~C~~~PglvNlrS~~pls~~dgp~eYTCrl~GYP~ 424 (486)
T PHA03273 376 DHLPGVPSQDMTTGVCSSHPGLVNMQSRRPLSEENGEREYSCIIEGYPD 424 (486)
T ss_pred CCCCCCcccccccccCCCCCCceeeeccccccccCCceeEEEEEeecCC
Confidence 63322111 1111 223333221111123467899999999986
No 402
>PHA03240 envelope glycoprotein M; Provisional
Probab=90.72 E-value=0.59 Score=35.61 Aligned_cols=75 Identities=16% Similarity=0.088 Sum_probs=42.5
Q ss_pred CcceEEEcCCcEEEEEEecCCCceEEEEEE-------cCceeEEEeeeeee------------ecCcCEEEEeCCceeEE
Q psy15734 28 VANVTATVGKEALMACVVENLREYKVAWVK-------MITQTILSIHHKVV------------TQNKRVSITFNDHRSWF 88 (314)
Q Consensus 28 ~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~-------~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~ 88 (314)
-.++.+.+|++|+|.-.---.+.-.+.||+ .++........... ..+.++... -.+++
T Consensus 30 Cievt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~---C~Nst 106 (258)
T PHA03240 30 CEEHTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYE---CHNST 106 (258)
T ss_pred ceecccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEE---eccce
Confidence 346788999999996543223567899999 33321110000000 011122111 12348
Q ss_pred EEEeeecCCCCeEEEEE
Q psy15734 89 LHLRDVQETDRGWYMCQ 105 (314)
Q Consensus 89 L~i~~~~~~d~G~Y~C~ 105 (314)
|.|.++..+|.|+|.-.
T Consensus 107 L~i~~vn~sd~~nYcr~ 123 (258)
T PHA03240 107 LIIAHLNLSDAGEYCRK 123 (258)
T ss_pred EEEEEEeecCcchhhhc
Confidence 99999999999998433
No 403
>PHA03052 Hypothetical protein; Provisional
Probab=89.88 E-value=1.3 Score=27.08 Aligned_cols=31 Identities=16% Similarity=0.425 Sum_probs=24.1
Q ss_pred cceEEEcCCcEEEEEEec---CCCceEEEEEEcC
Q psy15734 29 ANVTATVGKEALMACVVE---NLREYKVAWVKMI 59 (314)
Q Consensus 29 ~~~~v~~g~~~~l~C~~~---~~~~~~v~W~~~~ 59 (314)
..+.+..|.+++|.|.+. +.....|.|.-++
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~ 38 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNG 38 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCC
Confidence 678899999999999993 3345678888743
No 404
>PHA03240 envelope glycoprotein M; Provisional
Probab=89.81 E-value=0.88 Score=34.69 Aligned_cols=106 Identities=14% Similarity=0.112 Sum_probs=56.3
Q ss_pred eEEecCceEEEEEEecccCCCceEEEcCCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCC
Q psy15734 135 VVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKG 214 (314)
Q Consensus 135 ~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~ 214 (314)
+.+.+|++++|.-.-.-.|...+.|++..+..+. -.|+...+-|.-.+.-+- ++
T Consensus 33 vt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~-------------------G~G~~~~plC~Ytppk~~-------r~ 86 (258)
T PHA03240 33 HTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGIT-------------------GNGDKLHPICTYDPPKNG-------KG 86 (258)
T ss_pred cccccCCceeeCCcccCCCCCEEEEEeeeccccc-------------------CCCCCCceeEEecCCccc-------cc
Confidence 4567899988765322235668999984433221 235566666765432110 01
Q ss_pred eeeecC-CceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc----eeEEEEEE
Q psy15734 215 DMIITG-DDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET----DGFIKVYV 270 (314)
Q Consensus 215 ~~~~~~-~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~----~~~~~l~V 270 (314)
+.+... ....+. ..- .+++|.|.++..+|.|+|.-.-....|.. ..-+.|.|
T Consensus 87 ktl~~t~~nt~i~-y~C---~NstL~i~~vn~sd~~nYcr~k~~~~g~~e~pt~sC~~l~~ 143 (258)
T PHA03240 87 KTLDESAENSFIL-YEC---HNSTLIIAHLNLSDAGEYCRKKCPPKGDCEFPTMSCFRLIL 143 (258)
T ss_pred cccccccCCCceE-EEe---ccceEEEEEEeecCcchhhhccCCCCCCcCCCcceeeeEee
Confidence 111111 111111 111 13599999999999999975555555543 12445555
No 405
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=89.12 E-value=6.3 Score=30.57 Aligned_cols=98 Identities=12% Similarity=0.056 Sum_probs=57.1
Q ss_pred eeEEecCCCeeeecCCceeeeEeeCC-eeeEEEEEEe-ecCCCCCeEEEEEEeeCCCCcee---EEEEEEEecCCCeeEE
Q psy15734 206 LNYWTNEKGDMIITGDDYEDSRLING-YSCHMTLKIR-SILSHQFGSYRCVAVNALGETDG---FIKVYVNLVDGDIFQI 280 (314)
Q Consensus 206 ~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~-~~~~~d~G~Y~C~a~n~~g~~~~---~~~l~V~~~~~~~~~~ 280 (314)
.+.|+.|+........+.......+| .+..|+|.+. +...+..-..+|.+.-....... +..+.-..-+++.+.+
T Consensus 8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vsv 87 (211)
T PF02124_consen 8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVSV 87 (211)
T ss_pred EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEEE
Confidence 56799975533322222222333344 7888899994 44455566899999876554322 2233333444455543
Q ss_pred EEccccccEeEEEEEeeccC--CCccceE
Q psy15734 281 RKMSRLHMGAYLCIASNGVV--PSVSHRI 307 (314)
Q Consensus 281 ~~~~~~~~g~~~C~a~~~~~--~~~~w~v 307 (314)
+...|...|.|..=|- -.+.|.+
T Consensus 88 ----~F~~g~AVC~A~CVP~~~v~l~W~v 112 (211)
T PF02124_consen 88 ----RFEDGYAVCTARCVPRGNVTLRWSV 112 (211)
T ss_pred ----EecCCEEEEEcceeeCCCeEEEEEE
Confidence 3466788999988773 3667765
No 406
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=86.86 E-value=3.6 Score=27.09 Aligned_cols=67 Identities=13% Similarity=0.163 Sum_probs=38.4
Q ss_pred CCcceeecCccEEEEEEEee-----cCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734 182 NQLEGAFVSQTVELHCHTEA-----FPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA 255 (314)
Q Consensus 182 ~~~~~v~~g~~~~l~C~~~g-----~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a 255 (314)
+....+..|.+++..|.... .....+.|..++. .....+++.. .++ .+.+++.+.....+-.|.|..
T Consensus 10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~--~iP~~qy~~i--n~~---~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGE--KIPGSQYRVI--NDT---VSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSC--ESTCGCEEEE--STT---EEEEEESS--SSEEEEEEEEE
T ss_pred cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCE--ECChhHccee--CCe---EEEEEEccCCCCCceEEEEEE
Confidence 34456889999999999853 2456888988644 3344444332 222 246677666665555666653
No 407
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=86.58 E-value=7.2 Score=25.78 Aligned_cols=82 Identities=10% Similarity=0.084 Sum_probs=48.1
Q ss_pred EEcCCCcceeecCccEEEEEEEeecCCc-eeEEecCCCeeee-cCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734 178 LTIPNQLEGAFVSQTVELHCHTEAFPAS-LNYWTNEKGDMII-TGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA 255 (314)
Q Consensus 178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a 255 (314)
+.+.|....|..|.++.+.|..+- |.| .+-|.-.-.+... .+. ....+.+.+++. | ..-.|.+
T Consensus 6 v~v~P~~~vV~~G~Sv~VNCStsC-~~p~~~GLET~L~k~~~~~g~------------~W~~f~LsnV~~-d-s~~~C~~ 70 (91)
T PF03921_consen 6 VRVSPEEPVVPPGGSVWVNCSTSC-PQPEKIGLETSLSKTELDSGP------------QWKAFQLSNVTE-D-SSPLCFF 70 (91)
T ss_dssp EEEESSEEEEETTEEEEEEEEESS-SS-SEEEEESSSEEEEEEEET------------TEEEEEEEEE-S-C-EEEEEEE
T ss_pred EEEECCccEECCCCCEEEEEcCCC-CCCCcceEEEecCCcccCCCC------------cEEEEEEEcccc-C-CeEEEEE
Confidence 345667778999999999999753 333 3334332111111 111 134788889986 4 5777887
Q ss_pred eeCCCCceeEEEEEEEecC
Q psy15734 256 VNALGETDGFIKVYVNLVD 274 (314)
Q Consensus 256 ~n~~g~~~~~~~l~V~~~~ 274 (314)
.=.......+..|+|...|
T Consensus 71 ~C~g~Q~~~~~~ItVY~~P 89 (91)
T PF03921_consen 71 NCSGEQSSASANITVYKPP 89 (91)
T ss_dssp EETTEEEEEEEEEEEEB--
T ss_pred EcCCeEEEeEEeeEEeCCC
Confidence 6543344677788887665
No 408
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=85.35 E-value=6.9 Score=32.82 Aligned_cols=21 Identities=10% Similarity=0.382 Sum_probs=17.1
Q ss_pred cEEEEEEecCC-C-ceEEEEEEc
Q psy15734 38 EALMACVVENL-R-EYKVAWVKM 58 (314)
Q Consensus 38 ~~~l~C~~~~~-~-~~~v~W~~~ 58 (314)
.++|.|.+.|. | ...+.|.|+
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999884 3 478899996
No 409
>PHA03052 Hypothetical protein; Provisional
Probab=82.68 E-value=2.6 Score=25.78 Aligned_cols=31 Identities=6% Similarity=0.198 Sum_probs=23.2
Q ss_pred CcceeecCccEEEEEEEe-ec--CCceeEEecCC
Q psy15734 183 QLEGAFVSQTVELHCHTE-AF--PASLNYWTNEK 213 (314)
Q Consensus 183 ~~~~v~~g~~~~l~C~~~-g~--p~p~~~W~~~~ 213 (314)
....+..|..++|.|.|. |. ..+.+.|.-++
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~ 38 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNG 38 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCC
Confidence 566788999999999995 33 34567787754
No 410
>PHA03112 IL-18 binding protein; Provisional
Probab=82.53 E-value=5.9 Score=28.45 Aligned_cols=78 Identities=17% Similarity=0.317 Sum_probs=43.7
Q ss_pred ecCccEEEEEEEeec-CC-ceeEEecCCCeeeecC---Cce------eeeEeeCCeeeEEEEEEeecCCC-CCeEEEEEE
Q psy15734 188 FVSQTVELHCHTEAF-PA-SLNYWTNEKGDMIITG---DDY------EDSRLINGYSCHMTLKIRSILSH-QFGSYRCVA 255 (314)
Q Consensus 188 ~~g~~~~l~C~~~g~-p~-p~~~W~~~~~~~~~~~---~~~------~~~~~~~~~~~~s~L~i~~~~~~-d~G~Y~C~a 255 (314)
..++.+.|+|.+-+. |. ..+.|..++.+..... ..+ ..............|.+.++..+ +.-.++|+.
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCVL 115 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCVL 115 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEEE
Confidence 458999999999864 65 4667997642211100 000 00111111223347777777754 344888988
Q ss_pred eeCCCCceeE
Q psy15734 256 VNALGETDGF 265 (314)
Q Consensus 256 ~n~~g~~~~~ 265 (314)
....+...+.
T Consensus 116 ~D~~~~~k~~ 125 (141)
T PHA03112 116 MDLDGPIKKS 125 (141)
T ss_pred ecCCchhhHH
Confidence 7776655444
No 411
>KOG0613|consensus
Probab=81.92 E-value=5.6 Score=39.11 Aligned_cols=75 Identities=12% Similarity=0.080 Sum_probs=43.7
Q ss_pred EEEEeeecCCCCeEEEEEEecCCCcce-eEE--EEEE--------------eCCceeee-cCcceeEEecCceEEEEEEe
Q psy15734 88 FLHLRDVQETDRGWYMCQINTVPMTSQ-KGY--LQVV--------------VPPRILLD-RTSTDVVVREGTEVTLECSA 149 (314)
Q Consensus 88 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~--l~v~--------------~~p~~~~~-~~~~~~~~~~g~~~~l~C~~ 149 (314)
.+.|.+....+.+.|+|...+.+.... .+. +.+. .++..... .....+..+.+..+.+.|..
T Consensus 279 t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~ 358 (1205)
T KOG0613|consen 279 TKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTAL 358 (1205)
T ss_pred cccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccc
Confidence 566777777777888887744332211 111 1111 01211111 11234456778889999999
Q ss_pred cccCCCc-eEEEcC
Q psy15734 150 VGYPEPY-VAWRRE 162 (314)
Q Consensus 150 ~~~p~p~-~~W~~~ 162 (314)
.+.+.|. +.|+..
T Consensus 359 ~~~~~p~~~~~~~~ 372 (1205)
T KOG0613|consen 359 SGTQKPDEAQGYHG 372 (1205)
T ss_pred cCCcCCchheeecc
Confidence 9998885 999984
No 412
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=80.88 E-value=12 Score=24.02 Aligned_cols=20 Identities=15% Similarity=0.368 Sum_probs=16.4
Q ss_pred EEEEeeecCCCCeEEEEEEe
Q psy15734 88 FLHLRDVQETDRGWYMCQIN 107 (314)
Q Consensus 88 ~L~i~~~~~~d~G~Y~C~~~ 107 (314)
.+........|+|.+.|.+.
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEE
T ss_pred EEEEecCCCCCCEEEEEEEc
Confidence 45666778899999999994
No 413
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=80.43 E-value=14 Score=24.24 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=34.0
Q ss_pred cEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCcee
Q psy15734 192 TVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDG 264 (314)
Q Consensus 192 ~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 264 (314)
...|.+.+.+. .+.++|+-| +..+....... .+.+. ....|.|+-.+....|...+
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vd-g~~~g~~~~~~------------~~~~~---~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVD-GEPLGTTQPGH------------QLFWQ---PDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-CCcEEEEEC-CEEcccCCCCC------------eEEeC---CCCCeeEEEEEEcCCCCEEE
Confidence 56666666666 459999997 55442222111 33222 24579999888888876544
No 414
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=80.27 E-value=14 Score=24.32 Aligned_cols=67 Identities=12% Similarity=0.310 Sum_probs=39.6
Q ss_pred CcceEEEcCCcEEEEEEecC-----CCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEE
Q psy15734 28 VANVTATVGKEALMACVVEN-----LREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWY 102 (314)
Q Consensus 28 ~~~~~v~~g~~~~l~C~~~~-----~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 102 (314)
++...+..|++++..|.... .....+.|..++. .+ +..++....+.. ..+++.++....+-.|
T Consensus 10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~-~i---------P~~qy~~in~~~--SsVT~~~~~~~~~~L~ 77 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGE-KI---------PGSQYRVINDTV--SSVTLPNLNPTGATLF 77 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSC-ES---------TCGCEEEESTTE--EEEEESS--SSEEEEE
T ss_pred cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCE-EC---------ChhHcceeCCeE--EEEEEccCCCCCceEE
Confidence 34556899999999999853 2346788887443 22 233443333322 3678888777777778
Q ss_pred EEEE
Q psy15734 103 MCQI 106 (314)
Q Consensus 103 ~C~~ 106 (314)
-|..
T Consensus 78 cC~l 81 (89)
T PF06328_consen 78 CCKL 81 (89)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 415
>KOG1026|consensus
Probab=80.14 E-value=8.7 Score=36.09 Aligned_cols=132 Identities=16% Similarity=0.129 Sum_probs=72.2
Q ss_pred EEecCceEEEEEEecccCCCceEEEcCCCceeecCCeeC------------------------C----CeEEcCCCccee
Q psy15734 136 VVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELV------------------------P----PMLTIPNQLEGA 187 (314)
Q Consensus 136 ~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~~------------------------~----p~~~~~~~~~~v 187 (314)
.+..|..+++.|.+.+.|.|...|+. .+.......... - .....+......
T Consensus 203 ~v~~~~~~~~~c~~~~~~vp~~~~~~-~~~~~~~~~~~~~~c~~~~~~~~~~~c~~E~~~~~~~~~v~~~~~~p~~~~~~ 281 (774)
T KOG1026|consen 203 TVEEGSSITLKCSQAGIPVPCHYWFP-NCLASSNTNQTSSLCRSECEVLENDLCIAENAVARSNPSILLVVDLPKAEVLL 281 (774)
T ss_pred hhcccchheeeeecccCCCcceeeec-ccccccCCCcccccccccceeeechhhHHHHhhhhcCceeeeEEecccccccC
Confidence 46678999999999999999999998 333322211110 0 011111111111
Q ss_pred ecCccEEEEEEEe---ecCCceeEEecCCCeeeecCCceeeeEeeC-CeeeEEEEEEeecCCCCCeEEEEEEeeCCCCce
Q psy15734 188 FVSQTVELHCHTE---AFPASLNYWTNEKGDMIITGDDYEDSRLIN-GYSCHMTLKIRSILSHQFGSYRCVAVNALGETD 263 (314)
Q Consensus 188 ~~g~~~~l~C~~~---g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 263 (314)
..-.+-.-.|... +.|.+...|.+++.. +.-......+.... . -+........+.|.|+|.+.|..|...
T Consensus 282 ~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~t~s~~~~-----C~~~~~~~h~~~~~~~~~~e~~~g~~~ 355 (774)
T KOG1026|consen 282 CSPLSDHHNCIPIGITANPGPALHWCYNGSG-LNYRGTVCVTKSGKEQ-----CLPWNDPPHSHNGNYTLFPELPGGKNY 355 (774)
T ss_pred CCCccccCceeeeeccCCCCCceeeeecCcc-ceEecccccccccCcC-----CcccCcCcccccCcceeeecccCcccc
Confidence 1111113344443 566677889886433 22111111111111 2 344444467789999999999999887
Q ss_pred eEEEEEEEecC
Q psy15734 264 GFIKVYVNLVD 274 (314)
Q Consensus 264 ~~~~l~V~~~~ 274 (314)
......+...|
T Consensus 356 ~r~~g~~~~~P 366 (774)
T KOG1026|consen 356 CRNPGGFMSRP 366 (774)
T ss_pred ccCcCccccCC
Confidence 77666665544
No 416
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=79.90 E-value=27 Score=27.27 Aligned_cols=112 Identities=16% Similarity=0.250 Sum_probs=53.9
Q ss_pred EEEE-eeecCCCCeEEEEEEecCCCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCC--CceEEEcCCC
Q psy15734 88 FLHL-RDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPE--PYVAWRREDG 164 (314)
Q Consensus 88 ~L~i-~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--p~~~W~~~~~ 164 (314)
+|.+ .+....-.-+.+|.+.-.........+.-...|.+...+. -.+....|. ..|.+...|. ..+.|.-+|.
T Consensus 40 tl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~-vsv~F~~g~---AVC~A~CVP~~~v~l~W~v~d~ 115 (211)
T PF02124_consen 40 TLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPR-VSVRFEDGY---AVCTARCVPRGNVTLRWSVGDD 115 (211)
T ss_pred EEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCE-EEEEecCCE---EEEEcceeeCCCeEEEEEECCc
Confidence 5666 3333334457999984221111111222222333333220 111222232 3577766653 5899998544
Q ss_pred ceeecCCee--------CCCeEEcCCCcceeecCccEEEEEEEeecCC
Q psy15734 165 KAINYNGEL--------VPPMLTIPNQLEGAFVSQTVELHCHTEAFPA 204 (314)
Q Consensus 165 ~~~~~~~~~--------~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~ 204 (314)
.. ...... .|-...+.+..-.-.....++-+|...|+|.
T Consensus 116 ~~-~~~~~~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC~l~GYP~ 162 (211)
T PF02124_consen 116 PS-PAPAATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTCRLIGYPD 162 (211)
T ss_pred cC-CCCCceeecCcccCCcceeEeecccCCCccCCceeEEEEEeeCCC
Confidence 32 211111 1334444333333345667899999999986
No 417
>PHA02935 Hypothetical protein; Provisional
Probab=79.60 E-value=11 Score=28.71 Aligned_cols=64 Identities=16% Similarity=0.171 Sum_probs=36.5
Q ss_pred EEEEeeecCCCCeEEEEEEecCCCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecc
Q psy15734 88 FLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVG 151 (314)
Q Consensus 88 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~ 151 (314)
-|.|..++-+|+|.|.-...-..+.-....+.+.++..+...........+.--.+.+.|...+
T Consensus 103 clnisslryedsgsykgvshlkdgvivtttmnisvkaniidltgrvryltrnycevkirceiks 166 (349)
T PHA02935 103 CLNISSLRYEDSGSYKGVSHLKDGVIVTTTMNISVKANIIDLTGRVRYLTRNYCEVKIRCEIKS 166 (349)
T ss_pred EeeccceeeccCCcccCchhhcCceEEEEEEEEEEEeeeEeccceeeeeccccEEEEEEEEEee
Confidence 4788899999999998765433333333344444444444332111222333456888898764
No 418
>PHA03189 UL14 tegument protein; Provisional
Probab=75.58 E-value=44 Score=27.54 Aligned_cols=20 Identities=15% Similarity=0.320 Sum_probs=17.1
Q ss_pred CcceEEEcCCcEEEEEEecC
Q psy15734 28 VANVTATVGKEALMACVVEN 47 (314)
Q Consensus 28 ~~~~~v~~g~~~~l~C~~~~ 47 (314)
+....+..|+.++++|.+..
T Consensus 59 pAP~l~pyGdrvtVpC~fp~ 78 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPT 78 (348)
T ss_pred CCccccCCCceeeeeeeecC
Confidence 56778899999999999954
No 419
>PHA03281 envelope glycoprotein E; Provisional
Probab=74.45 E-value=66 Score=28.99 Aligned_cols=76 Identities=9% Similarity=0.078 Sum_probs=45.2
Q ss_pred EEEEEeeecCCCCeEEEEEEecC-CCcce-eEEEEEEeCC-------ceeeec--------CcceeEEecCceEEEEEEe
Q psy15734 87 WFLHLRDVQETDRGWYMCQINTV-PMTSQ-KGYLQVVVPP-------RILLDR--------TSTDVVVREGTEVTLECSA 149 (314)
Q Consensus 87 ~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~-~~~l~v~~~p-------~~~~~~--------~~~~~~~~~g~~~~l~C~~ 149 (314)
+.|.|.+++..++|.|+--.+.. +.... .+.|.|...+ .+.... .-.......|+++.+.-..
T Consensus 298 ~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~L 377 (642)
T PHA03281 298 GVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMHL 377 (642)
T ss_pred CeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEEE
Confidence 37999999999999999877533 32333 3445554422 110000 0122346689988877765
Q ss_pred ccc--C---CCceEEEcC
Q psy15734 150 VGY--P---EPYVAWRRE 162 (314)
Q Consensus 150 ~~~--p---~p~~~W~~~ 162 (314)
... . ...+.|+..
T Consensus 378 ~s~ihD~pFsleI~Wyy~ 395 (642)
T PHA03281 378 QYKIHDAPFDLLLEWLYV 395 (642)
T ss_pred eeeccCCCceeEEEEEEe
Confidence 432 2 237999974
No 420
>KOG0613|consensus
Probab=73.91 E-value=11 Score=37.32 Aligned_cols=84 Identities=14% Similarity=-0.111 Sum_probs=54.7
Q ss_pred cceeecCccEEEEEEEeecCCce-eEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734 184 LEGAFVSQTVELHCHTEAFPASL-NYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET 262 (314)
Q Consensus 184 ~~~v~~g~~~~l~C~~~g~p~p~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~ 262 (314)
.+.+..+..+.+.|...+.+.|. +.|+.+....... ...... ..+-.+...+.|..+...+.+.|.|.|.|..|..
T Consensus 343 ~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~--~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~ 419 (1205)
T KOG0613|consen 343 SVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSES-LGALPC--PVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTE 419 (1205)
T ss_pred eeccccCcceeecccccCCcCCchheeeccccccccc-cccccc--ccccccCcchhhhhcCcccccccccceeccCCcc
Confidence 33455677899999999998886 8899864322111 110111 1111123388899999999999999999999876
Q ss_pred eeEEEEEE
Q psy15734 263 DGFIKVYV 270 (314)
Q Consensus 263 ~~~~~l~V 270 (314)
...-...|
T Consensus 420 ~~~~~~~v 427 (1205)
T KOG0613|consen 420 QTIAESTV 427 (1205)
T ss_pred cccchhhc
Confidence 54433334
No 421
>KOG0200|consensus
Probab=66.36 E-value=53 Score=30.61 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=20.3
Q ss_pred EEEEEeecCCCCCeEEEEEEeeCC
Q psy15734 236 MTLKIRSILSHQFGSYRCVAVNAL 259 (314)
Q Consensus 236 s~L~i~~~~~~d~G~Y~C~a~n~~ 259 (314)
..+.+.++...+.|.|.|...+..
T Consensus 117 ~~~~~~n~~~~~~~~~~~~~~~~~ 140 (609)
T KOG0200|consen 117 ESGLIYNVSLTEAGEYLCWTGRTV 140 (609)
T ss_pred EeeeeeccChhhcceeeccCCCcc
Confidence 388899999999999999987633
No 422
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=65.83 E-value=19 Score=26.72 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=26.5
Q ss_pred EEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734 237 TLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270 (314)
Q Consensus 237 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 270 (314)
-|+|.+.+.+|+|.|.-++.-.......-+.+.+
T Consensus 125 lL~i~~p~~~dsG~Y~lRV~l~~~~~~d~F~~~v 158 (161)
T PF01688_consen 125 LLRIRNPRPEDSGIYYLRVWLDGANKADVFRLSV 158 (161)
T ss_pred EEEeCCCCcccceEEEEEEEECCCCCCcEEEEee
Confidence 7999999999999999999877655555444443
No 423
>PHA03189 UL14 tegument protein; Provisional
Probab=64.61 E-value=81 Score=26.12 Aligned_cols=25 Identities=12% Similarity=0.057 Sum_probs=17.3
Q ss_pred CcceeecCccEEEEEEEe--ecCCcee
Q psy15734 183 QLEGAFVSQTVELHCHTE--AFPASLN 207 (314)
Q Consensus 183 ~~~~v~~g~~~~l~C~~~--g~p~p~~ 207 (314)
....+..|+.+++.|.+- ..|...|
T Consensus 60 AP~l~pyGdrvtVpC~fp~H~WPevsI 86 (348)
T PHA03189 60 APLLVPYGDRVTVPCTFPTHDWPEVSI 86 (348)
T ss_pred CccccCCCceeeeeeeecCCCCceeeE
Confidence 334577899999999884 3555444
No 424
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=54.65 E-value=44 Score=24.83 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=21.3
Q ss_pred eEEEEEeeecCCCCeEEEEEEecCC
Q psy15734 86 SWFLHLRDVQETDRGWYMCQINTVP 110 (314)
Q Consensus 86 ~~~L~i~~~~~~d~G~Y~C~~~~~~ 110 (314)
..-|+|.+.+.+|+|.|.-+++-++
T Consensus 123 ~~lL~i~~p~~~dsG~Y~lRV~l~~ 147 (161)
T PF01688_consen 123 GVLLRIRNPRPEDSGIYYLRVWLDG 147 (161)
T ss_pred ceEEEeCCCCcccceEEEEEEEECC
Confidence 3469999999999999999996543
No 425
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=50.73 E-value=57 Score=20.02 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=34.7
Q ss_pred eEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734 207 NYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270 (314)
Q Consensus 207 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 270 (314)
..|++++ +... +..+....+.+++.|...+.+ .+.|.++..+....|..-..+.+.|
T Consensus 9 H~W~~~g-~~~~---~i~l~i~g~r~Rt~S~k~~~~---~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 9 HRWYKNG-KLVA---RIPLPISGGRWRTWSSKQNFP---DQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEECC-EEEE---EEEEeccCCCEEEEEEeecCC---CCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 4599864 3221 111222233355555555544 7889999999999888777776665
No 426
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=49.97 E-value=35 Score=20.84 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=12.6
Q ss_pred EEEEEEeecCCceeEEecCCCeee
Q psy15734 194 ELHCHTEAFPASLNYWTNEKGDMI 217 (314)
Q Consensus 194 ~l~C~~~g~p~p~~~W~~~~~~~~ 217 (314)
+|+|..+.+ --++|+-++...+
T Consensus 2 tltC~s~~s--LPiswYcN~TRLl 23 (71)
T PF11049_consen 2 TLTCPSNAS--LPISWYCNGTRLL 23 (71)
T ss_pred ceecCCCCC--CcccEEECCceee
Confidence 356655432 2368998765544
No 427
>PHA03290 envelope glycoprotein I; Provisional
Probab=49.86 E-value=53 Score=27.46 Aligned_cols=36 Identities=14% Similarity=-0.034 Sum_probs=27.4
Q ss_pred EEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEe
Q psy15734 237 TLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNL 272 (314)
Q Consensus 237 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 272 (314)
-|.|.+...+|+|.|.-++.-.......-+.+.+..
T Consensus 130 LL~I~~P~~~DSGiY~LRV~Ldga~~sDvF~lsv~V 165 (357)
T PHA03290 130 IFKINKPGIEDAGIYLLLVQLDHSRLFDGFFLGLNV 165 (357)
T ss_pred EEEeCCCCcccCeeEEEEEEeCCCcccceEEEEEEE
Confidence 899999999999999999987755444444444443
No 428
>PHA03112 IL-18 binding protein; Provisional
Probab=49.77 E-value=74 Score=23.02 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=20.5
Q ss_pred EEcCCcEEEEEEecCC-Cc-eEEEEEEcC
Q psy15734 33 ATVGKEALMACVVENL-RE-YKVAWVKMI 59 (314)
Q Consensus 33 v~~g~~~~l~C~~~~~-~~-~~v~W~~~~ 59 (314)
..+++++.|.|.+-+. |. .-+.|..++
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 3568999999999654 43 678999755
No 429
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=49.27 E-value=76 Score=21.04 Aligned_cols=82 Identities=17% Similarity=0.252 Sum_probs=44.9
Q ss_pred cCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEE
Q psy15734 26 EPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQ 105 (314)
Q Consensus 26 ~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 105 (314)
..|....|..|+++.+.|..+=..+..+.|--.-.... ...+.... .+.+.|++. | ..-.|.
T Consensus 8 v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~k~~-------~~~g~~W~---------~f~LsnV~~-d-s~~~C~ 69 (91)
T PF03921_consen 8 VSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLSKTE-------LDSGPQWK---------AFQLSNVTE-D-SSPLCF 69 (91)
T ss_dssp EESSEEEEETTEEEEEEEEESSSS-SEEEEESSSEEEE-------EEEETTEE---------EEEEEEE-S-C-EEEEEE
T ss_pred EECCccEECCCCCEEEEEcCCCCCCCcceEEEecCCcc-------cCCCCcEE---------EEEEEcccc-C-CeEEEE
Confidence 45678889999999999998532222334321100000 11111111 577788885 5 456798
Q ss_pred EecCC-CcceeEEEEEEeCCc
Q psy15734 106 INTVP-MTSQKGYLQVVVPPR 125 (314)
Q Consensus 106 ~~~~~-~~~~~~~l~v~~~p~ 125 (314)
+.-.+ .......|.|+.+|.
T Consensus 70 ~~C~g~Q~~~~~~ItVY~~Pe 90 (91)
T PF03921_consen 70 FNCSGEQSSASANITVYKPPE 90 (91)
T ss_dssp EEETTEEEEEEEEEEEEB--S
T ss_pred EEcCCeEEEeEEeeEEeCCCC
Confidence 86544 335566788887763
No 430
>PHA03282 envelope glycoprotein E; Provisional
Probab=48.40 E-value=48 Score=29.20 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=25.0
Q ss_pred EEEEeecCCCCCeEEEEEEeeCCCCc--eeEEEEEEE
Q psy15734 237 TLKIRSILSHQFGSYRCVAVNALGET--DGFIKVYVN 271 (314)
Q Consensus 237 ~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~ 271 (314)
+|.|.+++.+|+|.|+-.+....... .+.+.|.|.
T Consensus 125 tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~ 161 (540)
T PHA03282 125 TLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG 161 (540)
T ss_pred eEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence 89999999999999999875443322 334555553
No 431
>PHA03290 envelope glycoprotein I; Provisional
Probab=47.53 E-value=60 Score=27.20 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=27.5
Q ss_pred eEEEEEeeecCCCCeEEEEEEecCCCcc-eeEEEEEEeC
Q psy15734 86 SWFLHLRDVQETDRGWYMCQINTVPMTS-QKGYLQVVVP 123 (314)
Q Consensus 86 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v~~~ 123 (314)
...|+|.+.+.+|+|.|.-+++-++... ..+.+.+.+.
T Consensus 128 ~vLL~I~~P~~~DSGiY~LRV~Ldga~~sDvF~lsv~Vy 166 (357)
T PHA03290 128 EIIFKINKPGIEDAGIYLLLVQLDHSRLFDGFFLGLNVY 166 (357)
T ss_pred ceEEEeCCCCcccCeeEEEEEEeCCCcccceEEEEEEEe
Confidence 3479999999999999999997654433 3445555543
No 432
>PHA03289 envelope glycoprotein I; Provisional
Probab=43.84 E-value=74 Score=26.51 Aligned_cols=35 Identities=17% Similarity=0.025 Sum_probs=27.5
Q ss_pred EEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEE
Q psy15734 237 TLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN 271 (314)
Q Consensus 237 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 271 (314)
-|.|.+...+|+|.|.-++.-.......-+.+.+.
T Consensus 123 LL~I~~Pr~~DSGiYyLRV~Ldga~~sDvF~lsv~ 157 (352)
T PHA03289 123 LLTIIEPRMSDTGIYYIRVSLAGRNKSDIFRTSVF 157 (352)
T ss_pred EEEeCCCCcccCeeEEEEEEeCCCccCceEEEEEE
Confidence 88999999999999999998776655555555443
No 433
>PHA03283 envelope glycoprotein E; Provisional
Probab=43.39 E-value=1.1e+02 Score=27.62 Aligned_cols=37 Identities=16% Similarity=0.061 Sum_probs=29.6
Q ss_pred EEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEe
Q psy15734 236 MTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNL 272 (314)
Q Consensus 236 s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 272 (314)
+.|.|.++..+++|.|+-...+..+.....+.|.|..
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~ 170 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKK 170 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCceEEEEEEEEecC
Confidence 3899999999999999999998777445555666654
No 434
>PHA03292 envelope glycoprotein I; Provisional
Probab=42.41 E-value=74 Score=27.20 Aligned_cols=34 Identities=15% Similarity=0.064 Sum_probs=27.2
Q ss_pred EEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734 237 TLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270 (314)
Q Consensus 237 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 270 (314)
-|.|.+...+|+|.|.-++.-.......-+.|.+
T Consensus 129 LL~I~~P~~~DSGiY~LRV~Ldga~~aDvF~lsv 162 (413)
T PHA03292 129 LLNITGPQPADSGAYILRVKLDHAPTADVFGLSA 162 (413)
T ss_pred EEEeCCCCcccceeEEEEEEeCCCccCceeEEEE
Confidence 8999999999999999999887665555554444
No 435
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=41.31 E-value=1.1e+02 Score=20.55 Aligned_cols=61 Identities=18% Similarity=0.276 Sum_probs=36.2
Q ss_pred EEEEEe-cCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEec
Q psy15734 40 LMACVV-ENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINT 108 (314)
Q Consensus 40 ~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 108 (314)
.=.|.+ .|.|+..|.|.-+-+... ........++-+.+.. .+.+......|.-.-+|.+..
T Consensus 24 VA~CiSa~GrPpa~ItW~t~l~G~~--etq~~~~~~GT~TV~S------~y~lVPs~~~~gk~lTCvV~h 85 (98)
T cd05890 24 VATCVSANGKPPSVVRWDTRLKGEA--EFQEIRNQNGTVTVIS------RYRLVPSREAHKQKLTCIVNY 85 (98)
T ss_pred EEEEEcCCCcCCcEeEEEccCCCce--eeeeeCCCCCCEEEEE------EEEEeECHHHcCCEeEEEEEe
Confidence 347885 678999999975321111 1111122233444433 466677777888899999964
No 436
>KOG1026|consensus
Probab=40.26 E-value=21 Score=33.71 Aligned_cols=75 Identities=19% Similarity=0.245 Sum_probs=49.2
Q ss_pred cceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCce
Q psy15734 184 LEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETD 263 (314)
Q Consensus 184 ~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 263 (314)
...+..|..+++.|.+.+.|-|...|+..............+-. +. ...+.+ ++|.+.|..|...
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~--~~-----~~~~~~--------~~c~~E~~~~~~~ 265 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCR--SE-----CEVLEN--------DLCIAENAVARSN 265 (774)
T ss_pred hhhhcccchheeeeecccCCCcceeeecccccccCCCccccccc--cc-----ceeeec--------hhhHHHHhhhhcC
Confidence 34577899999999999999999999986432222111111110 00 222222 8999999999988
Q ss_pred eEEEEEEEec
Q psy15734 264 GFIKVYVNLV 273 (314)
Q Consensus 264 ~~~~l~V~~~ 273 (314)
.++.+.+..+
T Consensus 266 ~~v~~~~~~p 275 (774)
T KOG1026|consen 266 PSILLVVDLP 275 (774)
T ss_pred ceeeeEEecc
Confidence 8887766544
No 437
>PHA03292 envelope glycoprotein I; Provisional
Probab=39.81 E-value=98 Score=26.51 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=26.9
Q ss_pred eeEEEEEeeecCCCCeEEEEEEecCCCcc-eeEEEEEEe
Q psy15734 85 RSWFLHLRDVQETDRGWYMCQINTVPMTS-QKGYLQVVV 122 (314)
Q Consensus 85 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v~~ 122 (314)
....|.|.+.+.+|+|.|.-++.-++... ..+.+.+.+
T Consensus 126 ~~vLL~I~~P~~~DSGiY~LRV~Ldga~~aDvF~lsvfV 164 (413)
T PHA03292 126 TNVLLNITGPQPADSGAYILRVKLDHAPTADVFGLSAFV 164 (413)
T ss_pred cceEEEeCCCCcccceeEEEEEEeCCCccCceeEEEEEE
Confidence 34579999999999999999997654333 334444443
No 438
>PHA03291 envelope glycoprotein I; Provisional
Probab=37.38 E-value=99 Score=26.20 Aligned_cols=35 Identities=11% Similarity=0.057 Sum_probs=29.6
Q ss_pred EEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEE
Q psy15734 237 TLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN 271 (314)
Q Consensus 237 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 271 (314)
-|.|.+...+|+|.|.-.+.-.......-+.|.+.
T Consensus 130 LL~i~~P~~~DsGiYvLRV~vdgat~adlF~lg~~ 164 (401)
T PHA03291 130 LLRARGAARAVVGLYVLRVWVEGATNASLFPLGLA 164 (401)
T ss_pred EEEecCCCcccceeEEEEEEeCCCcccceEEEeee
Confidence 88999999999999999998877766666666666
No 439
>PHA02935 Hypothetical protein; Provisional
Probab=36.89 E-value=1.9e+02 Score=22.18 Aligned_cols=62 Identities=18% Similarity=0.151 Sum_probs=37.6
Q ss_pred EEEEEeecCCCCCeEEEEEEeeCCCCc-eeEEEEEEE----ecCCCeeEEEEccccccEeEEEEEeecc
Q psy15734 236 MTLKIRSILSHQFGSYRCVAVNALGET-DGFIKVYVN----LVDGDIFQIRKMSRLHMGAYLCIASNGV 299 (314)
Q Consensus 236 s~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~----~~~~~~~~~~~~~~~~~g~~~C~a~~~~ 299 (314)
..|.|...+.+|+|.|.-...-..|.. .....+.|. ...|....++ +.-....+.|+...+.
T Consensus 102 tclnisslryedsgsykgvshlkdgvivtttmnisvkaniidltgrvrylt--rnycevkirceiksfa 168 (349)
T PHA02935 102 TCLNISSLRYEDSGSYKGVSHLKDGVIVTTTMNISVKANIIDLTGRVRYLT--RNYCEVKIRCEIKSFA 168 (349)
T ss_pred EEeeccceeeccCCcccCchhhcCceEEEEEEEEEEEeeeEeccceeeeec--cccEEEEEEEEEeeee
Confidence 378899999999999997766666543 233333332 2333333322 2334456888887665
No 440
>PHA03281 envelope glycoprotein E; Provisional
Probab=33.33 E-value=1.3e+02 Score=27.31 Aligned_cols=36 Identities=22% Similarity=0.156 Sum_probs=27.3
Q ss_pred EEEEeecCCCCCeEEEEEEeeCCCCcee-EEEEEEEe
Q psy15734 237 TLKIRSILSHQFGSYRCVAVNALGETDG-FIKVYVNL 272 (314)
Q Consensus 237 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~ 272 (314)
.|.|.++..+++|.|+--.....|.... .+.|.|..
T Consensus 299 vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg 335 (642)
T PHA03281 299 VLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKG 335 (642)
T ss_pred eeEEEecccccceeEEEEecCCCCcceeEEEEEEecC
Confidence 8999999999999999877766565544 45555543
No 441
>COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination [Transcription]
Probab=31.51 E-value=1.2e+02 Score=20.29 Aligned_cols=43 Identities=19% Similarity=0.410 Sum_probs=26.2
Q ss_pred EEEEEeeCCCCceeEEEEEEEecCCCeeEEEEccccccEeEEEE
Q psy15734 251 YRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCI 294 (314)
Q Consensus 251 Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~C~ 294 (314)
=+|.+++..+....-+.| |..+++..+....-....-|.|.|.
T Consensus 9 R~CIv~re~~~k~eLlR~-v~~~eg~v~~d~~~k~~GRGaYv~~ 51 (95)
T COG2740 9 RTCIVCRERGPKKELLRF-VAVKEGEVVIDPTGKLPGRGAYVCP 51 (95)
T ss_pred cEEEEeccccChhHeEEE-EecCCCeEEEccccCCCCceEEEeC
Confidence 479999988887777776 5555553332222222244678775
No 442
>PHA03286 envelope glycoprotein E; Provisional
Probab=30.77 E-value=2e+02 Score=25.50 Aligned_cols=35 Identities=23% Similarity=0.155 Sum_probs=28.4
Q ss_pred EEEEeecCCCCCeEEEEEEeeCCCCceeE-EEEEEE
Q psy15734 237 TLKIRSILSHQFGSYRCVAVNALGETDGF-IKVYVN 271 (314)
Q Consensus 237 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~ 271 (314)
.|.|.++..+++|.|+-...|..|....+ +.|.|.
T Consensus 128 ~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~ 163 (492)
T PHA03286 128 ELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVS 163 (492)
T ss_pred ceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEe
Confidence 89999999999999999999887766544 445553
No 443
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=29.36 E-value=2.5e+02 Score=21.24 Aligned_cols=115 Identities=17% Similarity=0.200 Sum_probs=0.0
Q ss_pred EEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCC----eeeEEEEEEeecCCCCCeEEEEEEe-----eCCCCce
Q psy15734 193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLING----YSCHMTLKIRSILSHQFGSYRCVAV-----NALGETD 263 (314)
Q Consensus 193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~----~~~~s~L~i~~~~~~d~G~Y~C~a~-----n~~g~~~ 263 (314)
+.-.|.+..+..-.+.|+-++...........-...-.+ |...++|++.-+..----.-+|.+. ...+.+.
T Consensus 4 l~A~CtVetn~~ls~fWkigk~svDaf~rgtthTR~mrngvpvyalVstlk~pw~nviplt~ITCaaC~~nf~~g~~~dl 83 (226)
T PF05955_consen 4 LEASCTVETNSGLSFFWKIGKASVDAFNRGTTHTRLMRNGVPVYALVSTLKVPWLNVIPLTKITCAACPTNFVAGDENDL 83 (226)
T ss_pred eeeEEEEEecCceEEEEEeCCeeEeeecCCceeeeeeeCcEehhheeehhcccccccccccEEEehhcchhhcccCcCCc
Q ss_pred eEEEEEEEecCCCeeEEEEccccccEe-EEEEEeecc-CCCccceE
Q psy15734 264 GFIKVYVNLVDGDIFQIRKMSRLHMGA-YLCIASNGV-VPSVSHRI 307 (314)
Q Consensus 264 ~~~~l~V~~~~~~~~~~~~~~~~~~g~-~~C~a~~~~-~~~~~w~v 307 (314)
.+-...-..-|-+.-.-....-...|. -.|.+++-. +|.|+|.|
T Consensus 84 ~sCt~ksttIPCpgqqrthIfFs~kg~rAvCitseL~s~PtitWsV 129 (226)
T PF05955_consen 84 NSCTTKSTTIPCPGQQRTHIFFSAKGHRAVCITSELVSQPTITWSV 129 (226)
T ss_pred ceeEeecccccCCCcceEEEEEeccCcEEEEeeccccCCCeEEEEe
No 444
>PF03174 CHB_HEX_C: Chitobiase/beta-hexosaminidase C-terminal domain; InterPro: IPR004867 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This short domain is found in members of the glycoside hydrolase family 20 (GH20 from CAZY) and represents the C-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. It is composed of a beta sandwich structure []. The function of this domain is unknown. ; GO: 0004563 beta-N-acetylhexosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=29.21 E-value=1.5e+02 Score=18.50 Aligned_cols=61 Identities=20% Similarity=0.181 Sum_probs=26.0
Q ss_pred eeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeE
Q psy15734 186 GAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGF 265 (314)
Q Consensus 186 ~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 265 (314)
....+..+.|.| ..|...|.+..|+......+. +--..+...+.+.+.+.+....|..+..
T Consensus 11 ~~~~~~~v~l~~---~~~~~~I~YT~DGs~Pt~~s~----------------~Y~~Pi~i~~~~~vka~a~~~~g~~s~v 71 (75)
T PF03174_consen 11 TYDEGQTVTLSS---DTPGATIYYTLDGSEPTKSSP----------------LYTGPITIPESGTVKARAFDNGGNVSEV 71 (75)
T ss_dssp EEEETTEEEEE----SSTTSEEEEESSSSSS----E----------------E--CCC--B--S--EEEEE-TTS-B---
T ss_pred cEecCeEEEEEe---CCCCCEEEEEcCCCcccccCc----------------ccCcCEEeCCCcEEEEEEEcCCCCcCcc
Confidence 344577888888 345557777776444322222 1122444455666777777766655443
No 445
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=28.77 E-value=1.7e+02 Score=18.97 Aligned_cols=42 Identities=10% Similarity=0.077 Sum_probs=26.7
Q ss_pred CCCCceecCCcceEEEcC----CcEEEEEEecCCCceEEEEEEcCcee
Q psy15734 19 PDMPRFAEPVANVTATVG----KEALMACVVENLREYKVAWVKMITQT 62 (314)
Q Consensus 19 ~~~p~~~~~~~~~~v~~g----~~~~l~C~~~~~~~~~v~W~~~~~~~ 62 (314)
..+|+|+.|.+...+... +...|.+.+.+. ...+.||- |+..
T Consensus 8 ~~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~v-dg~~ 53 (89)
T PF06832_consen 8 GSPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFV-DGEP 53 (89)
T ss_pred CCCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEE-CCEE
Confidence 456778777665544443 256777777665 33999999 4443
No 446
>PHA03289 envelope glycoprotein I; Provisional
Probab=28.73 E-value=1.4e+02 Score=25.00 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=25.0
Q ss_pred EEEEEeeecCCCCeEEEEEEecCCCc-ceeEEEEEE
Q psy15734 87 WFLHLRDVQETDRGWYMCQINTVPMT-SQKGYLQVV 121 (314)
Q Consensus 87 ~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~l~v~ 121 (314)
.-|.|.+.+.+|+|.|.-+++-++.. ...+.+.+.
T Consensus 122 vLL~I~~Pr~~DSGiYyLRV~Ldga~~sDvF~lsv~ 157 (352)
T PHA03289 122 LLLTIIEPRMSDTGIYYIRVSLAGRNKSDIFRTSVF 157 (352)
T ss_pred eEEEeCCCCcccCeeEEEEEEeCCCccCceEEEEEE
Confidence 36999999999999999999755433 233344443
No 447
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=27.85 E-value=77 Score=28.15 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=20.6
Q ss_pred EEEEeeecCCCCeEEEEEEecCCCcceeEE
Q psy15734 88 FLHLRDVQETDRGWYMCQINTVPMTSQKGY 117 (314)
Q Consensus 88 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 117 (314)
.|.|.|+...++|.|.|.+.-++....-..
T Consensus 270 ~l~f~~a~~~~sGLYv~V~~~nghv~aW~y 299 (439)
T PF02480_consen 270 DLQFTNAPESASGLYVFVVYYNGHVEAWTY 299 (439)
T ss_dssp SEEESS--GGG-EEEEEEEEETTEEEEEEE
T ss_pred ceEecCCCcccCceEEEEEEECCeeeeeEE
Confidence 599999999999999999965554444333
No 448
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=25.91 E-value=1.6e+02 Score=17.79 Aligned_cols=28 Identities=11% Similarity=0.037 Sum_probs=19.6
Q ss_pred eeecCccEEEEEEEeecCCceeEEecCC
Q psy15734 186 GAFVSQTVELHCHTEAFPASLNYWTNEK 213 (314)
Q Consensus 186 ~v~~g~~~~l~C~~~g~p~p~~~W~~~~ 213 (314)
.+..|+.+.|......-....+.|.+++
T Consensus 7 ~~~~g~~v~f~~~~~~g~~~~y~W~fgd 34 (69)
T PF00801_consen 7 YVPTGQPVTFTASSSDGSPVTYSWDFGD 34 (69)
T ss_dssp CEBTTSEEEEEETTTTSSECEEEEE-SS
T ss_pred EEcCCCEEEEEEEccCCCCeEEEEEECC
Confidence 4678999999988733334577799976
No 449
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=25.80 E-value=1.7e+02 Score=17.91 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=12.6
Q ss_pred eecCccEEEEEEEeecCCceeEEe
Q psy15734 187 AFVSQTVELHCHTEAFPASLNYWT 210 (314)
Q Consensus 187 v~~g~~~~l~C~~~g~p~p~~~W~ 210 (314)
|..|+.++|. |-|...+.|+
T Consensus 2 v~~G~N~TL~----Gp~~~~V~Wy 21 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPDGPVTWY 21 (63)
T ss_pred EeEcCcEEEe----CCCCCceEEE
Confidence 4566676664 3354568888
No 450
>PHA03291 envelope glycoprotein I; Provisional
Probab=23.43 E-value=1.2e+02 Score=25.73 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=26.2
Q ss_pred EEEEEeeecCCCCeEEEEEEecCCCcc-eeEEEEEE
Q psy15734 87 WFLHLRDVQETDRGWYMCQINTVPMTS-QKGYLQVV 121 (314)
Q Consensus 87 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~l~v~ 121 (314)
-.|.|.+.+.+|+|.|..+++-++... ..+.|.+.
T Consensus 129 vLL~i~~P~~~DsGiYvLRV~vdgat~adlF~lg~~ 164 (401)
T PHA03291 129 PLLRARGAARAVVGLYVLRVWVEGATNASLFPLGLA 164 (401)
T ss_pred eEEEecCCCcccceeEEEEEEeCCCcccceEEEeee
Confidence 469999999999999999997554333 34455555
No 451
>PF05566 Pox_vIL-18BP: Orthopoxvirus interleukin 18 binding protein; InterPro: IPR008791 Interleukin-18 (IL-18) is a proinflammatory cytokine that plays a key role in the activation of natural killer and T helper 1 cell responses principally by inducing interferon-gamma (IFN-gamma). Several poxvirus genes encode proteins with sequence similarity to IL-18BPs. It has been shown that vaccinia, ectromelia and cowpox viruses secrete from infected cells a soluble IL-18BP (vIL-18BP) that may modulate the host antiviral response. The expression of vIL-18BPs by distinct poxvirus genera that cause local or general viral dissemination, or persistent or acute infections in the host, emphasises the importance of IL-18 in response to viral infections [].; PDB: 3F62_A.
Probab=22.98 E-value=2.6e+02 Score=19.18 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=24.3
Q ss_pred eEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEE
Q psy15734 234 CHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKV 268 (314)
Q Consensus 234 ~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 268 (314)
..-.|++.+..+-+.-.++|+.....|-...++-|
T Consensus 91 ~~kvL~vt~t~Kf~h~rfTCVL~t~DGvskk~iw~ 125 (126)
T PF05566_consen 91 LDKVLHVTDTEKFAHYRFTCVLTTIDGVSKKNIWL 125 (126)
T ss_dssp EEEEEEE--TTTTTTEEEEEEEEETTEEEEE----
T ss_pred hhheeeecchhhccceeEEEEEEcCCccccccccC
Confidence 45578888988888899999999998877766544
No 452
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=21.75 E-value=2.3e+02 Score=18.08 Aligned_cols=36 Identities=25% Similarity=0.450 Sum_probs=24.8
Q ss_pred EEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCe
Q psy15734 239 KIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDI 277 (314)
Q Consensus 239 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~ 277 (314)
.|..+..+|.|.|.-.+.+..| +.+.+.+....+..
T Consensus 44 ~v~~ve~~~~g~yev~~~~~dG---~~~ev~vD~~tG~V 79 (83)
T PF13670_consen 44 QVREVEFDDDGCYEVEARDKDG---KKVEVYVDPATGEV 79 (83)
T ss_pred ceEEEEEcCCCEEEEEEEECCC---CEEEEEEcCCCCeE
Confidence 6777888778889999877766 55556565554443
No 453
>KOG3611|consensus
Probab=20.98 E-value=2.9e+02 Score=26.64 Aligned_cols=64 Identities=28% Similarity=0.298 Sum_probs=36.0
Q ss_pred cEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734 38 EALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV 109 (314)
Q Consensus 38 ~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 109 (314)
...|.|...+... .+.|+......... .....+.+..... .+.|.+..++..|.|.|.|.+...
T Consensus 571 ~~~l~c~~~~~~a-~~~w~~~~~~~~~~---~~~~~~~~~~~~~----~G~lll~~~q~~~~G~y~c~~~e~ 634 (737)
T KOG3611|consen 571 SEVLRCVPSSNQA-PVVWYHQSTKDGRK---EEVRQRDVVSRTD----EGGLVLLSVQKLDGGTYPCYADES 634 (737)
T ss_pred cceeecccccccc-ceeeEeeccCcccc---ceeccCcceeecc----cCceeEEEEeeccCcccccccccC
Confidence 4688888866444 38887432210000 0011222222221 124888899999999999998543
No 454
>KOG3611|consensus
Probab=20.79 E-value=1.4e+02 Score=28.66 Aligned_cols=34 Identities=24% Similarity=0.182 Sum_probs=23.6
Q ss_pred EEEEeecCCCCCeEEEEEEeeCCC-CceeEEEEEE
Q psy15734 237 TLKIRSILSHQFGSYRCVAVNALG-ETDGFIKVYV 270 (314)
Q Consensus 237 ~L~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~V 270 (314)
.|.+..++..|.|.|.|.+....- .....+.+.+
T Consensus 613 ~lll~~~q~~~~G~y~c~~~e~~~~~~~~~~~~~~ 647 (737)
T KOG3611|consen 613 GLVLLSVQKLDGGTYPCYADESSFVSTVISVNLHV 647 (737)
T ss_pred ceeEEEEeeccCcccccccccCccccceEEEeeee
Confidence 588889999999999999876432 2233444444
Done!