RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15734
(314 letters)
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 197 bits (503), Expect = 5e-62
Identities = 51/296 (17%), Positives = 99/296 (33%), Gaps = 57/296 (19%)
Query: 22 PRFAEPVANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
+ + +VG+ C V + ++ ++W + + +R+S+
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKL-------SPNQQRISVV 55
Query: 81 FNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREG 140
+ND S L + + D G Y C + T + + V + +++ T +EG
Sbjct: 56 WNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEG 115
Query: 141 TEVTLECSAVGYPEPYVAWRREDGK---------------------------------AI 167
+ + C V P + W+ +
Sbjct: 116 EDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGR 175
Query: 168 NYNGE-----------LVPPMLTIPNQLEGAFVS--QTVELHCHTEAFPASLNYWTNEKG 214
VPP + + A + Q+V L C + FP WT + G
Sbjct: 176 ILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKD-G 234
Query: 215 DMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
+ I ++ ++ + + S L IR++ + Y C+A N GE D I + V
Sbjct: 235 EPIENEEEDDEKHIFSDDS--SELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
Score = 64.1 bits (156), Expect = 7e-12
Identities = 29/202 (14%), Positives = 49/202 (24%), Gaps = 62/202 (30%)
Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYP-EPYVAWRREDGKAI--------- 167
LQV + P + G C G + ++W +G+ +
Sbjct: 3 LQVDIVPS--------QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISV 54
Query: 168 ----NYNGEL--------------------------------VPPMLTIPNQLEGAFVS- 190
+ + L + L N
Sbjct: 55 VWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKE 114
Query: 191 -QTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFG 249
+ + C + W ++ G +I D L N L+IR I G
Sbjct: 115 GEDAVIVCDVVSSLPPTIIWKHK-GRDVILKKDVRFIVLSNN-----YLQIRGIKKTDEG 168
Query: 250 SYRCVAVNALGETDGFIKVYVN 271
+YRC F + V
Sbjct: 169 TYRCEGRILARGEINFKDIQVI 190
Score = 46.0 bits (109), Expect = 6e-06
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 270 VNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSV-SHRIMVTVH 312
++ + QIR + + G Y C + I V V+
Sbjct: 149 FIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVN 192
Score = 39.5 bits (92), Expect = 0.001
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 9/105 (8%)
Query: 19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
P + + + N TA +G+ + C + E ++W K K +
Sbjct: 194 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEED----DEKHIF 249
Query: 79 ITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVV 122
+ L +R+V + D Y+C N +L+V
Sbjct: 250 SDDSSE----LTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290
Score = 34.5 bits (79), Expect = 0.031
Identities = 10/56 (17%), Positives = 15/56 (26%)
Query: 257 NALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
L I V N D I + G Y C+ + + V +
Sbjct: 43 EKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF 98
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 143 bits (362), Expect = 2e-40
Identities = 42/367 (11%), Positives = 85/367 (23%), Gaps = 97/367 (26%)
Query: 31 VTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNK-------RVSITFND 83
V G + C + + W IL +T+ + D
Sbjct: 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63
Query: 84 HRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEV 143
++ L +++++ D Y+C++ Q + D + +G +
Sbjct: 64 QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANS---------DTHLLQGQSL 114
Query: 144 TLECSAVGYPEPYVAWRREDGKAINYNGELV----------------------------- 174
TL + P V R GK I L
Sbjct: 115 TLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI 174
Query: 175 -----PPMLTIPNQLEGAFVSQTVELHCHTEAF---------------PASLNYWTNEKG 214
+I + EG V + L E S + +
Sbjct: 175 VVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNK 234
Query: 215 DMIITGDDYEDS-RLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLV 273
++ + + ++ H+TL G+ G+ + + V
Sbjct: 235 EVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRA 294
Query: 274 DG-------------------------------DIFQIRKMSRLHMGAYLCIASNGVVPS 302
+ + G + C+ S+
Sbjct: 295 TQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNPEAGMWQCLLSDSGQVL 354
Query: 303 VSHRIMV 309
+ I V
Sbjct: 355 LESNIKV 361
Score = 66.4 bits (161), Expect = 1e-12
Identities = 25/214 (11%), Positives = 46/214 (21%), Gaps = 74/214 (34%)
Query: 135 VVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVE 194
V+ ++G V L C+A W+ + I N
Sbjct: 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSK------------- 50
Query: 195 LHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV 254
+D DSR + L I+++ +Y C
Sbjct: 51 -------------------------LNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICE 85
Query: 255 AVNALGETD-GFIKVYV----------------------------------NLVDGDIFQ 279
+ E + N+ G
Sbjct: 86 VEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLS 145
Query: 280 IRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVHC 313
+ ++ G + C V +I + V
Sbjct: 146 VSQLELQDSGTWTCTVLQN-QKKVEFKIDIVVLA 178
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 130 bits (327), Expect = 4e-37
Identities = 24/151 (15%), Positives = 45/151 (29%), Gaps = 16/151 (10%)
Query: 31 VTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKR-------VSITFND 83
V G + C + + W IL +T+ + D
Sbjct: 5 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64
Query: 84 HRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEV 143
++ L +++++ D Y+C++ Q + D + +G +
Sbjct: 65 QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANS---------DTHLLQGQSL 115
Query: 144 TLECSAVGYPEPYVAWRREDGKAINYNGELV 174
TL + P V R GK I L
Sbjct: 116 TLTLESPPGSSPSVQCRSPRGKNIQGGKTLS 146
Score = 71.2 bits (174), Expect = 4e-15
Identities = 25/213 (11%), Positives = 46/213 (21%), Gaps = 74/213 (34%)
Query: 135 VVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVE 194
V+ ++G V L C+A W+ + I N
Sbjct: 5 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKL------------ 52
Query: 195 LHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV 254
+D DSR + L I+++ +Y C
Sbjct: 53 --------------------------NDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICE 86
Query: 255 AVNALGETD-GFIKVYV----------------------------------NLVDGDIFQ 279
+ E + N+ G
Sbjct: 87 VEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLS 146
Query: 280 IRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
+ ++ G + C V +I + V
Sbjct: 147 VSQLELQDSGTWTCTVLQN-QKKVEFKIDIVVL 178
Score = 31.1 bits (70), Expect = 0.26
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 89 LHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRI 126
L + ++ D G + C + K + V+ +
Sbjct: 145 LSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA 183
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 126 bits (319), Expect = 7e-37
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Query: 22 PRFAEPVA-NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
+ P+ NVT G A++ C V+ + W Q L K ++ R+ +
Sbjct: 6 SQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQ-TLYFDDKKALRDNRIELV 64
Query: 81 FNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPP 124
+ + DV +D G Y C + T+P+ + K YL V+ P
Sbjct: 65 RASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAYLTVLGVP 108
Score = 39.8 bits (93), Expect = 1e-04
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 131 TSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNG 171
+ +V V EG L C + W + + ++
Sbjct: 12 LTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDD 52
Score = 33.3 bits (76), Expect = 0.024
Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 5/84 (5%)
Query: 191 QTVELHCHTEAFPASLNYWTNEKGDMIITGDDY--EDSR--LINGYSCHMTLKIRSILSH 246
T L C + + W+N + D D+R L+ +++ + +
Sbjct: 22 GTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLS 81
Query: 247 QFGSYRCVAVNALGETDGFIKVYV 270
G Y C ++ + + V
Sbjct: 82 DEGQYTC-SLFTMPVKTSKAYLTV 104
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 119 bits (300), Expect = 7e-33
Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 13/146 (8%)
Query: 31 VTATVGKEALMACVVENLR---EYKVAWVKMITQ----TILSIHHKVVTQNKRVSITFND 83
VTA +G+ + + E +V+W K+ I +HH V+ F+
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60
Query: 84 HRS---WFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVRE 139
HRS +FL + + G Y+C++ +++ +L VV P + + S +
Sbjct: 61 HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSV--HSERSQFPD 118
Query: 140 GTEVTLECSAVGYPEPYVAWRREDGK 165
+ +T+ C+ +P P+V W +G
Sbjct: 119 FSVLTVTCTVNAFPHPHVQWLMPEGV 144
Score = 33.8 bits (77), Expect = 0.036
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 279 QIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
+ + H G YLC G V+ + ++V
Sbjct: 70 VVTAANISHDGNYLCRMKLG-ETEVTKQEHLSVV 102
Score = 30.0 bits (67), Expect = 0.73
Identities = 8/83 (9%), Positives = 13/83 (15%), Gaps = 6/83 (7%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
+ + C V V W+ N V
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTA-----ANGGVMK-E 158
Query: 82 NDHRSWFLHLRDVQETDRGWYMC 104
D + + C
Sbjct: 159 KDGSLSVAVDLSLPKPWHLPVTC 181
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 120 bits (303), Expect = 2e-32
Identities = 51/293 (17%), Positives = 85/293 (29%), Gaps = 60/293 (20%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P F +V +G+ C V K+ W K ++ + +T
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKD---------NREIRPGGNYKMTL 56
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREG 140
++ + L + V + D G Y C N S L V PPR + + +V++
Sbjct: 57 VENTA-TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPS-RIVKQD 114
Query: 141 TEVTLECSAVGYPEPYVAWRREDG----------------------------------KA 166
EC G PE V W +++ +A
Sbjct: 115 EHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEA 174
Query: 167 INYNGE---------LVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMI 217
N G PP+ V L C + P W K
Sbjct: 175 HNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWH--KDKRE 232
Query: 218 ITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
+ I + ++ I ++ S G Y+C A N +G + +
Sbjct: 233 LRSGKK---YKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
Score = 74.4 bits (183), Expect = 2e-15
Identities = 37/291 (12%), Positives = 64/291 (21%), Gaps = 109/291 (37%)
Query: 121 VVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDG---------------- 164
+ PP V + G T +C G + W +++
Sbjct: 3 MAPPFFD--LKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT 60
Query: 165 ------------------KAINYNGE---------LVPP-MLTIPNQLEGAFVSQTVELH 196
A N G+ PP + +
Sbjct: 61 ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYE 120
Query: 197 CHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV 256
C P W + I + S + + L++ ++ G Y C A
Sbjct: 121 CKIGGSPEIKVLWYKD-ETEIQESSKFRMSFVESVA----VLEMYNLSVEDSGDYTCEAH 175
Query: 257 NALGETDGFIKVYVN--------------------------------------------- 271
NA G + V
Sbjct: 176 NAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRS 235
Query: 272 ------LVDGDIF--QIRKMSRLHMGAYLCIASN--GVVPSVSHRIMVTVH 312
+ + + I + +G Y C ASN G S + +T+
Sbjct: 236 GKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG---SYTCVGSITLK 283
Score = 32.0 bits (73), Expect = 0.18
Identities = 20/142 (14%), Positives = 33/142 (23%), Gaps = 46/142 (32%)
Query: 171 GELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLIN 230
G + PP + + ++ CH W K + I L+
Sbjct: 1 GAMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWA--KDNREIRPGGNYKMTLVE 58
Query: 231 GYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGA 290
+ TL + + ++ G
Sbjct: 59 NTA---TLTVLKV----------------------------------------TKGDAGQ 75
Query: 291 YLCIASNGVVPSVSHRIMVTVH 312
Y C ASN V S + V
Sbjct: 76 YTCYASN-VAGKDSCSAQLGVQ 96
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 115 bits (290), Expect = 2e-32
Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 1/119 (0%)
Query: 21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
M +T G+ + CV + + W+ TI ++ V +N + +
Sbjct: 1 MGSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIF-LNEYPVLKNSKYQLL 59
Query: 81 FNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVRE 139
+ + + +V D G Y C + +++++ + V+ + R + E
Sbjct: 60 HHSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLATMKGEFCRYPSHWRPLE 118
Score = 42.3 bits (99), Expect = 2e-05
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 130 RTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNG 171
+ + V EG +TL+C + W G I N
Sbjct: 6 NHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNE 47
Score = 36.1 bits (83), Expect = 0.003
Identities = 15/85 (17%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 191 QTVELHCHTEAFPASLNYWTNEKGDMIITGDD--YEDSR--LINGYSCHMTLKIRSILSH 246
QT+ L C T S W G I + ++S+ L++ + +++ + ++
Sbjct: 17 QTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQ 76
Query: 247 QFGSYRCVAV-NALGETDGFIKVYV 270
G Y+C+ +++ + + V
Sbjct: 77 DEGVYKCLHYSDSVSTKEVKVIVLA 101
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 119 bits (299), Expect = 2e-31
Identities = 48/314 (15%), Positives = 92/314 (29%), Gaps = 75/314 (23%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLRE----YKVAWVKMITQTILSIHHKVVTQNKRV 77
+ + ++ +G + ++ C N +V W K + ++ + V
Sbjct: 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSV 74
Query: 78 SITFNDHRSWF--------LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLD 129
+ + + + L ++ D G Y+C+ T P +++ L + V +
Sbjct: 75 LAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNW 134
Query: 130 RTSTDVVVR-----EGTEVTLEC-SAVGYPEPYVAW------------------------ 159
T V+R + + C SA G P V+W
Sbjct: 135 IEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVIS 194
Query: 160 -------RREDGK-----AINYNGE---------LVPPMLTI-PNQLEGAFVSQTVELHC 197
R + + P +TI V+L C
Sbjct: 195 RYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTC 254
Query: 198 HTEAFPASLNY-WTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV 256
+A P + Y WT G + + + I G+Y C A
Sbjct: 255 KADANPPATEYHWTTLNGSLPKGVEAQNRTLFF----------KGPINYSLAGTYICEAT 304
Query: 257 NALGETDGFIKVYV 270
N +G G ++V +
Sbjct: 305 NPIGTRSGQVEVNI 318
Score = 34.3 bits (78), Expect = 0.035
Identities = 4/42 (9%), Positives = 13/42 (30%), Gaps = 1/42 (2%)
Query: 271 NLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
+ +++ H + CI + + + + V
Sbjct: 189 TVTVISRYRLVPSREAHQQSLACIVNYH-MDRFKESLTLNVQ 229
Score = 34.3 bits (78), Expect = 0.040
Identities = 10/103 (9%), Positives = 25/103 (24%), Gaps = 17/103 (16%)
Query: 26 EPVANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDH 84
E + + C + N + W + N +
Sbjct: 237 EGFDGNWYLQRMDVKLTCKADANPPATEYHWTTL---------------NGSLPKGVEAQ 281
Query: 85 RSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRI 126
+ + G Y+C+ N + S + + + +
Sbjct: 282 NRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAAAL 324
Score = 34.0 bits (77), Expect = 0.054
Identities = 22/166 (13%), Positives = 44/166 (26%), Gaps = 43/166 (25%)
Query: 111 MTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPY----VAWRREDGKA 166
M S G Q+ P ++ + + + GT+V L CS V W++ +
Sbjct: 1 MASMTGGQQMGRDPSQVV-QVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGS 59
Query: 167 INYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDS 226
P M ++ + + + D
Sbjct: 60 KQNVAIYNPSM---------------------------GVSVLAPYRERVEFLRPSFTDG 92
Query: 227 RLINGYSCHMTLKIRSILSHQFGSYRCVAVN-ALGETDGFIKVYVN 271
T+++ + G Y C G + + + V
Sbjct: 93 ----------TIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVM 128
Score = 28.6 bits (63), Expect = 2.7
Identities = 5/34 (14%), Positives = 15/34 (44%)
Query: 279 QIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
++ ++ G Y+C + + ++ +TV
Sbjct: 95 RLSRLELEDEGVYICEFATFPTGNRESQLNLTVM 128
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 111 bits (277), Expect = 2e-30
Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 1/105 (0%)
Query: 21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
++ T G ++ C V++ + + W Q L K ++ R+ +
Sbjct: 38 QDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQ-TLYFGEKRALRDNRIQLV 96
Query: 81 FNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPR 125
+ + + +V D G Y C I T+P+ + K + V+ P+
Sbjct: 97 TSTPHELSISISNVALADEGEYTCSIFTMPVRTAKSLVTVLGIPQ 141
Score = 32.8 bits (74), Expect = 0.053
Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 7/122 (5%)
Query: 154 EPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEK 213
P + +D + N ++ TV L C + S W+N
Sbjct: 19 SPDLGTDDDDKAMADINLSQDDSQPWTSDET--VVAGGTVVLKCQVKDHEDSSLQWSNPA 76
Query: 214 GDMIITGDDY--EDSR--LINGYSCHMTLKIRSILSHQFGSYRC-VAVNALGETDGFIKV 268
+ G+ D+R L+ +++ I ++ G Y C + + + V
Sbjct: 77 QQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTMPVRTAKSLVTV 136
Query: 269 YV 270
Sbjct: 137 LG 138
Score = 31.7 bits (71), Expect = 0.14
Identities = 7/41 (17%), Positives = 16/41 (39%)
Query: 131 TSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNG 171
++D V G V L+C + + + W + + +
Sbjct: 44 WTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGE 84
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 115 bits (288), Expect = 3e-30
Identities = 45/297 (15%), Positives = 75/297 (25%), Gaps = 70/297 (23%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P V + G + CV V W + +
Sbjct: 5 PVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGPPSPHW---------------TLY 45
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREG 140
+D S L + + G Y C S +L V P R + +VVV E
Sbjct: 46 SDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWN-VLAQEVVVFED 104
Query: 141 TEVTLECSAVGY-PEPYVAWRREDGKAINYNGELV------------------------- 174
+ L C E V+ R G+ + +
Sbjct: 105 QDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSAL 164
Query: 175 ---------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEK 213
PP LT+ + ++ C + + + +
Sbjct: 165 MGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHN 224
Query: 214 GDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
+ N Y +TL + + G+Y CVA N G+ + V
Sbjct: 225 NTKLAIPQQS--DFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRV 279
Score = 50.7 bits (121), Expect = 2e-07
Identities = 16/106 (15%), Positives = 29/106 (27%), Gaps = 8/106 (7%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P A + G+ A + C ++ +++ + N
Sbjct: 187 PALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNN------- 239
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRI 126
+ L+L V G Y C N S + +VV
Sbjct: 240 RYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGN 285
Score = 45.0 bits (106), Expect = 1e-05
Identities = 28/227 (12%), Positives = 43/227 (18%), Gaps = 85/227 (37%)
Query: 122 VPPRILLDRTSTDVVVREGTEVTLECSAVG------YPEPYVAWRREDG----------- 164
P I + ++VV+ G VTL C G P P+ +
Sbjct: 3 SIPVIE--PSVPELVVKPGATVTLRCVGNGSVEWDGPPSPHWTLYSDGSSSILSTNNATF 60
Query: 165 --------KAINYNGELV----------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASL 206
+ Q F Q L C
Sbjct: 61 QNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEA 120
Query: 207 NY-WTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGF 265
+G ++ +Y
Sbjct: 121 GVSLVRVRGRPLMRHTNYS----------------------------------------- 139
Query: 266 IKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
F I + + Y C A G +S I + V
Sbjct: 140 ------FSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQ 180
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 114 bits (287), Expect = 4e-30
Identities = 50/298 (16%), Positives = 94/298 (31%), Gaps = 67/298 (22%)
Query: 21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
+ + ++ V +VG+ C E + W + I+S +RV +
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIIS--------TQRVVVQ 54
Query: 81 FNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMT-SQKGYLQVVVPPRILLDRTSTDVVVR 138
RS L + + D G Y CQ + T L++ + +
Sbjct: 55 KEGVRS-RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFR--EVVSPQEFK 111
Query: 139 EGTEVTLECSAVGYPEPYVAWRREDGK---------AINYNGEL---------------- 173
+G + + C P P V+W + + A+ N L
Sbjct: 112 QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCE 171
Query: 174 -------------------VPPMLTIPNQLE--GAFVSQTVELHCHTEAFPASLNYWTNE 212
VPP +++P + A + + C P W
Sbjct: 172 GRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWF-- 229
Query: 213 KGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
+ +I ++ ++ G + L +R+I++ G Y C A N GE + + V
Sbjct: 230 RNGKLIEENEK---YILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282
Score = 55.6 bits (134), Expect = 4e-09
Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 13/111 (11%)
Query: 17 EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKR 76
P + N TA G+E +C E ++W + + K++ +N++
Sbjct: 190 NVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR---------NGKLIEENEK 240
Query: 77 VSITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRI 126
+ ++ L +R++ +D G Y+C+ N ++ +LQV V
Sbjct: 241 YILKGSNTE---LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHHH 288
Score = 52.5 bits (126), Expect = 4e-08
Identities = 28/244 (11%), Positives = 58/244 (23%), Gaps = 110/244 (45%)
Query: 121 VVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTI 180
+ ++ + + V + G C+A+G PE + W G+ I
Sbjct: 2 MALLQVT--ISLSKVELSVGESKFFTCTAIGEPES-IDWYNPQGEKI------------- 45
Query: 181 PNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKI 240
++ ++G L I
Sbjct: 46 ----------------------ISTQRVVVQKEGV-------------------RSRLTI 64
Query: 241 RSILSHQFGSYRCVAVNALGETD---GFIKVYV--------------------------- 270
+ G YRC A +A G+T +++Y
Sbjct: 65 YNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSS 124
Query: 271 -----------------------NLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRI 307
++ + QI +++ G Y C + R
Sbjct: 125 SPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRD 184
Query: 308 MVTV 311
++ +
Sbjct: 185 IIVI 188
Score = 33.3 bits (76), Expect = 0.074
Identities = 18/140 (12%), Positives = 39/140 (27%), Gaps = 45/140 (32%)
Query: 173 LVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGY 232
+ +TI V ++ C P S++++ + G+ II+ G
Sbjct: 2 MALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQ-GEKIISTQRVV--VQKEGV 58
Query: 233 SCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYL 292
L I + N+ D G Y
Sbjct: 59 RS--RLTIYN---------------------------ANIEDA-------------GIYR 76
Query: 293 CIASNGVVPSVSHRIMVTVH 312
C A++ + +++ ++
Sbjct: 77 CQATDAKGQTQEATVVLEIY 96
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 110 bits (277), Expect = 2e-29
Identities = 31/155 (20%), Positives = 53/155 (34%), Gaps = 15/155 (9%)
Query: 27 PVANVTATVGKEALMACVV-----ENLREYKVAWVKMITQTILSIHHKVVTQNK------ 75
P G + C +L V W I +H + + +
Sbjct: 7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQ 66
Query: 76 RVSITFND--HRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTST 133
R + + + L + DV+ D G Y C I+ ++ ++V P +
Sbjct: 67 RARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKI--NQRI 124
Query: 134 DVVVREGTEVTLECSAVGYPEPYVAWRREDGKAIN 168
VV +E L C A GYP+ V W D + ++
Sbjct: 125 LVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLS 159
Score = 31.5 bits (71), Expect = 0.28
Identities = 17/108 (15%), Positives = 29/108 (26%), Gaps = 8/108 (7%)
Query: 20 DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSI 79
V V E + C E + +V W Q + ++ +
Sbjct: 115 APYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEK-- 172
Query: 80 TFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRI 126
FN + LR + T + C P + L + P
Sbjct: 173 LFNVTST----LR-INTTTNEIFYCTFRRLDPEENHTAELVIPELPLA 215
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 114 bits (287), Expect = 1e-28
Identities = 60/394 (15%), Positives = 101/394 (25%), Gaps = 117/394 (29%)
Query: 17 EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKR 76
E P F +V +G+ C V K+ W K ++ +
Sbjct: 193 EHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKD---------NREIRPGGN 243
Query: 77 VSITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRILLDRTSTDV 135
+T ++ + L + V + D G Y C N S L V PPR + +
Sbjct: 244 YKMTLVENTAT-LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFI-KKLEPSR 301
Query: 136 VVREGTEVTLECSAVGYPEPYVAWRREDGK------------------------------ 165
+V++ EC G PE V W + D
Sbjct: 302 IVKQDEHTRYECKIGGSPEIKVLWYK-DETEIQESSKFRMSFVESVAVLEMYNLSVEDSG 360
Query: 166 -----AINYNGE---------LVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTN 211
A N G PP+ V L C + P W
Sbjct: 361 DYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHK 420
Query: 212 EKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN 271
+ + +G Y + + ++ I ++ S G Y+C A N +G + +
Sbjct: 421 D-KRELRSGKKY--KIMSENFLT--SIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK 475
Query: 272 ------------------------LVDGD------------------------------I 277
++G
Sbjct: 476 APPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIAT 535
Query: 278 FQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTV 311
Q + + G Y C N + ++V
Sbjct: 536 LQFSRAEPANAGKYTCQIKN-EAGTQECFATLSV 568
Score = 107 bits (270), Expect = 2e-26
Identities = 55/392 (14%), Positives = 97/392 (24%), Gaps = 119/392 (30%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P FA + +V T+G C + +V+W K +++ + + +F
Sbjct: 102 PSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYK---------DGELLKDDANLQTSF 152
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVV---VPPRILLDRTSTDVVV 137
H L + ++ G Y C N + S L + VPP V +
Sbjct: 153 -IHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFD--LKPVSVDL 209
Query: 138 REGTEVTLECSAVGYPEPYVAWRREDG----------KAINYNGEL-------------- 173
G T +C G + W +++ + L
Sbjct: 210 ALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYT 269
Query: 174 -------------------VPPMLTI-PNQLEGAFVSQTVELHCHTEAFPASLNYWTNEK 213
PP + C P W +
Sbjct: 270 CYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKD- 328
Query: 214 GDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN-- 271
I + S + + L++ ++ G Y C A NA G + V
Sbjct: 329 ETEIQESSKFRMSFVESVA----VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEP 384
Query: 272 -------------------------------------------------LVDGDIF--QI 280
+ + + I
Sbjct: 385 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHI 444
Query: 281 RKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
+ +G Y C ASN V S + +T+
Sbjct: 445 LNVDSADIGEYQCKASND-VGSDTCVGSITLK 475
Score = 93.7 bits (233), Expect = 2e-21
Identities = 59/300 (19%), Positives = 96/300 (32%), Gaps = 69/300 (23%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P F EP+ +V A +G+ + C V+ E ++AW K H + + F
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYK---------EHTKLRSAPAYKMQF 56
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQV---VVPPRILLDRTSTDVVV 137
++ + L + V +D G Y C+ N+V + L + +PP R DV
Sbjct: 57 KNNVA-SLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFA--RKLKDVHE 113
Query: 138 REGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPM------LTIPN--------- 182
G V EC G V+W + DG+ + + L L I
Sbjct: 114 TLGFPVAFECRINGSEPLQVSWYK-DGELLKDDANLQTSFIHNVATLQILQTDQSHVGQY 172
Query: 183 --------------------------QLEGAFVSQTV------ELHCHTEAFPASLNYWT 210
+ VS + CH W
Sbjct: 173 NCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWA 232
Query: 211 NEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
+ I G +Y+ + + N TL + + G Y C A N G+ ++ V
Sbjct: 233 KD-NREIRPGGNYKMTLVENTA----TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV 287
Score = 70.6 bits (173), Expect = 1e-13
Identities = 36/195 (18%), Positives = 55/195 (28%), Gaps = 53/195 (27%)
Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDG------------------ 164
PP + V G +TL+C G PE +AW +E
Sbjct: 5 PPYFI--EPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVAS 62
Query: 165 ----------------KAINYNGE------------LVPPMLTIPNQLEGAFVSQTVELH 196
KA N G +PP + + V
Sbjct: 63 LVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFE 122
Query: 197 CHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV 256
C W + G+++ + + S + N TL+I G Y C A
Sbjct: 123 CRINGSEPLQVSWYKD-GELLKDDANLQTSFIHNVA----TLQILQTDQSHVGQYNCSAS 177
Query: 257 NALGETDGFIKVYVN 271
N LG K+ ++
Sbjct: 178 NPLGTASSSAKLTLS 192
Score = 51.3 bits (123), Expect = 2e-07
Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 10/101 (9%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
PRF + +++++ VG+E + +E VAW K ++V ++ + I++
Sbjct: 478 PRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKD--------KGEIVRESDNIWISY 529
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVV 121
+++ + L + + G Y CQI N L V+
Sbjct: 530 SENIA-TLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 110 bits (275), Expect = 2e-28
Identities = 44/307 (14%), Positives = 76/307 (24%), Gaps = 79/307 (25%)
Query: 30 NVTATVGKEALMACVVEN-----LREYKVAWVK----MITQTILSIHHKVVTQNKRVSIT 80
V +G + C ++ ++ W + +++KR+
Sbjct: 9 QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFV 68
Query: 81 FNDHRSWF----LHLRDVQETDRGWYMCQINTVP--MTSQKGYLQVVVPPRILLDRTSTD 134
+ L + ++ D G Y C T P S +L+V+ P+
Sbjct: 69 AARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTA--EVQK 126
Query: 135 VVVREGTEVTLEC-SAVGYPEPYVAWRREDG----------------------------- 164
V + C S G P + W + G
Sbjct: 127 VQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQ 186
Query: 165 --------KAINYNGE-----------LVPPMLTI-PNQLEGAFVSQTVELHCHTEAFPA 204
K + + E PP ++I L C + P
Sbjct: 187 VDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPE 246
Query: 205 SLNY-WTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETD 263
Y W+ + L IR + + C NALG
Sbjct: 247 PTGYNWS--TTMGPLPPFAVAQGA---------QLLIRPVDKPINTTLICNVTNALGARQ 295
Query: 264 GFIKVYV 270
+ V V
Sbjct: 296 AELTVQV 302
Score = 34.3 bits (78), Expect = 0.038
Identities = 26/212 (12%), Positives = 52/212 (24%), Gaps = 37/212 (17%)
Query: 133 TDVVVREGTEVTLECSAVGYPEPY-----VAWRREDGKAINYNGELVPPMLTIPNQLEGA 187
T V G VTL C + W R G++ + +
Sbjct: 8 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWAR-HGESGSMAVFHQTQGPSYSESKRLE 66
Query: 188 FVSQTVELHCHTEAFPASLNYWTNEKGD------MIITGDDYEDSRLIN-----GYSCHM 236
FV+ + ASL + D + +T S I
Sbjct: 67 FVAARLGAELRN----ASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTA 122
Query: 237 TLKIRSILSHQFGSYRCVAVNA---------------LGETDGFIKVYVNLVDGDIFQIR 281
++ + RCV+ + + + ++ +
Sbjct: 123 EVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILV 182
Query: 282 KMSRLHMGAYLCIASNGVVP-SVSHRIMVTVH 312
S++ C + + +TV+
Sbjct: 183 PSSQVDGKNVTCKVEHESFEKPQLLTVNLTVY 214
Score = 27.0 bits (59), Expect = 8.7
Identities = 15/102 (14%), Positives = 22/102 (21%), Gaps = 18/102 (17%)
Query: 21 MPRFAEPVANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVSI 79
N EA + C N W T L
Sbjct: 217 PEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWST--TMGPLPPFAVAQGAQ----- 269
Query: 80 TFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQV 120
L +R V + +C N + + +QV
Sbjct: 270 ---------LLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 111 bits (280), Expect = 1e-27
Identities = 68/401 (16%), Positives = 111/401 (27%), Gaps = 121/401 (30%)
Query: 17 EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKR 76
+ D P + T G + CV +++W K + N R
Sbjct: 425 GRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWEL---------DGKKIANNDR 475
Query: 77 VSI----TFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRILLDRT 131
+ T N +L++ V D G Y C + V + L V P I R
Sbjct: 476 YQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYI---RQ 532
Query: 132 STDVVVREGTEVTLECSAVGYPEPYVAWRREDGK-------AINYNGELV---------- 174
+ G + + C GYP + W R++ + NG L+
Sbjct: 533 MEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQ 592
Query: 175 --------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLN- 207
P ++ + A V Q + LHC LN
Sbjct: 593 ATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNI 652
Query: 208 YWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIK 267
WT I+ D + + L I ++ + G++ C A N G
Sbjct: 653 DWT--LDGQAISEDLGITTSRVGRRGS--VLTIEAVEASHAGNFTCHARNLAGHQQFTTP 708
Query: 268 VYV-----------------------------------------NLVDGDIFQIRKMSRL 286
+ V G+ ++K +
Sbjct: 709 LNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNI 768
Query: 287 HM---------------GAYLCIASNGVVPSVSHRIMVTVH 312
+ G YLC A NG+ +S IM++V
Sbjct: 769 RVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQ 809
Score = 105 bits (263), Expect = 2e-25
Identities = 70/378 (18%), Positives = 106/378 (28%), Gaps = 101/378 (26%)
Query: 24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND 83
T + + C + W K I T + + K+VS T
Sbjct: 251 SLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGT--- 307
Query: 84 HRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTE 142
L ++D D G Y+C + N+V S + L V P V G
Sbjct: 308 -----LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAK--IDPPTQTVDFGRP 360
Query: 143 VTLECSAVGYPEPYVAWRREDGKAINY-NGELV--------------------------- 174
C G P V+W + DGKAI + L
Sbjct: 361 AVFTCQYTGNPIKTVSWMK-DGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASA 419
Query: 175 ---------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYED 225
PP++ Q E +V L C P W + G I D Y+
Sbjct: 420 ELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELD-GKKIANNDRYQV 478
Query: 226 SRLINGYSCHM-TLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN------------- 271
+ + + L I S+ ++ G Y+C+A + +G + K+ V
Sbjct: 479 GQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAI 538
Query: 272 ----------LVDGD---------------------IFQ-----IRKMSRLH-MGAYLCI 294
V G +F I + R Y C+
Sbjct: 539 VAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCV 598
Query: 295 ASNGVVPSVSHRIMVTVH 312
A N S + V V
Sbjct: 599 AKNQEGYSARGSLEVQVM 616
Score = 90.4 bits (224), Expect = 3e-20
Identities = 41/310 (13%), Positives = 72/310 (23%), Gaps = 84/310 (27%)
Query: 21 MPRFAEPVANVTATVGKEALMACVVENLR---EYKVAWVKMITQTILSIHHKVVTQNKRV 77
+ V G A++ C++ + V+W + + +
Sbjct: 138 AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAE----YDGKY 193
Query: 78 SITFNDHRSWFLHLRDVQETD-RGWYMC-----------QINTVPMTSQKGYLQVVVPPR 125
+ + LH+R+V D Y C T + VP
Sbjct: 194 LVLPSGE----LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKV 249
Query: 126 ILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGK-------------------- 165
+ L + + + L C A GYP P W +
Sbjct: 250 VSLAKFDM-KTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTL 308
Query: 166 ----------------AINYNGE---------LVPPMLTIPNQLEGAFVSQTVELHCHTE 200
N G P I + + C
Sbjct: 309 IIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYT 368
Query: 201 AFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG 260
P W + G I + L+I S+ G Y+C N
Sbjct: 369 GNPIKTVSWMKD-GKAIGHSES--------------VLRIESVKKEDKGMYQCFVRNDRE 413
Query: 261 ETDGFIKVYV 270
+ ++ +
Sbjct: 414 SAEASAELKL 423
Score = 77.7 bits (191), Expect = 5e-16
Identities = 47/313 (15%), Positives = 84/313 (26%), Gaps = 73/313 (23%)
Query: 22 PRF-AEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
P F EP + + A + C ++ W++ + + + +
Sbjct: 39 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG-KLV 97
Query: 81 FNDHRSWFLHLRDVQETDRGWYMCQI-NTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVR 138
F F QE Y C N + S+ +++ VV D V
Sbjct: 98 FPP----FRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVN--KEHVI 151
Query: 139 EGTEVTLEC---SAVGYPEPYVAWRREDGK------------AINYNGELV--------- 174
G ++C S V V+W ++ + + +GEL
Sbjct: 152 RGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDG 211
Query: 175 -----------------------------PPMLTIPNQLEGAFVS-------QTVELHCH 198
P +P + A T+ L C
Sbjct: 212 YKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCP 271
Query: 199 TEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNA 258
+ +P + W + R+ TL I+ + G Y CV N+
Sbjct: 272 AQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSG---TLIIKDAVVEDSGKYLCVVNNS 328
Query: 259 LGETDGFIKVYVN 271
+G + V
Sbjct: 329 VGGESVETVLTVT 341
Score = 75.7 bits (186), Expect = 2e-15
Identities = 34/247 (13%), Positives = 62/247 (25%), Gaps = 66/247 (26%)
Query: 89 LHLRDVQETDRGWYMCQ---INTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTL 145
+++ + + + + P L + T+ + T +
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNR-IDFSNSTGAEI 59
Query: 146 ECSAVGYPEPYVAWRREDGKAINY---------NGELV---------------------- 174
EC A G P P + W R DG A+ +G+LV
Sbjct: 60 ECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLA 119
Query: 175 ------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLN---YWTNEK 213
E + + C +F A W +
Sbjct: 120 RNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTD- 178
Query: 214 GDMIITGDDYEDSRLI---NGYSCHMTLKIRSI-LSHQFGSYRCVAVNALGETDGFIKVY 269
+ D + + +G L IR + + SY+C + L
Sbjct: 179 EEENYFPGAEYDGKYLVLPSG-----ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATK 233
Query: 270 VNLVDGD 276
LV +
Sbjct: 234 GRLVITE 240
Score = 50.3 bits (120), Expect = 5e-07
Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 9/105 (8%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
PR+ + G +A + C + + +V W K +K + ++ + +
Sbjct: 715 PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKK--AVGDTPGEYKDLKKSDNIRVEE 772
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQINTV--PMTSQKGYLQVVVPP 124
LH+ ++Q+T+ G+Y+C+ S + V
Sbjct: 773 GT-----LHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHH 812
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 108 bits (272), Expect = 3e-27
Identities = 59/298 (19%), Positives = 95/298 (31%), Gaps = 65/298 (21%)
Query: 21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
RF ++TA +G L+ C V + W K Q + + + RV +
Sbjct: 121 PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKN-QQDL-----NPIPGDSRVVVL 174
Query: 81 FNDHRSWFLHLRDVQETDRGWYMCQI-NTV-PMTSQKGYLQVVVPPRILLD----RTSTD 134
+ L + +Q D G Y C N T + ++++ P + + ++
Sbjct: 175 PSGA----LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSN 230
Query: 135 VVVREGTEVTLECSAVGYPEPYVAWRREDG------------------------------ 164
V+ EG + LEC GYP P W R +
Sbjct: 231 VIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTY 290
Query: 165 --KAINYNGE---------LVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEK 213
N LVPP A+ S +E C P W
Sbjct: 291 TCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKN- 349
Query: 214 GDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN 271
GD++I D ++ L+I ++ G Y+CVA N G ++ V
Sbjct: 350 GDVVIPSDYFQIVG--GS-----NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP 400
Score = 89.1 bits (221), Expect = 3e-20
Identities = 55/398 (13%), Positives = 96/398 (24%), Gaps = 126/398 (31%)
Query: 22 PRFAEPVANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
F ++ G L+ C E + + W K +
Sbjct: 22 LHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKD--------GLILALGMDDRKQQ 73
Query: 81 FNDHRSWFLHLR--DVQETDRGWYMC--QINTV-PMTSQKGYLQVVVPPRILLDRTSTDV 135
+ ++ + D G Y C + + S+ + V P R L + +
Sbjct: 74 LPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFL--SQTESI 131
Query: 136 VVREGTEVTLECSAVGYPEPYVAWRREDGKAINY-----------NGELV---------- 174
G V L+C +G P P + W++ + + +N +G L
Sbjct: 132 TAFMGDTVLLKCEVIGDPMPTIHWQK-NQQDLNPIPGDSRVVVLPSGALQISRLQPGDSG 190
Query: 175 ------------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPA 204
A + L C +P
Sbjct: 191 VYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPP 250
Query: 205 SLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDG 264
W +G+ +I + S L L I ++ G+Y CV
Sbjct: 251 PSFTWL--RGEEVIQLRSKKYSLLGGS-----NLLISNVTDDDSGTYTCVVTYKNENISA 303
Query: 265 FIKVYVN------------------------------------------LVDGDIFQIRK 282
++ V ++ D FQI
Sbjct: 304 SAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVG 363
Query: 283 MSRL--------HMGAYLCIASNGVVPSVSHRIMVTVH 312
S L G Y C+A N + + V
Sbjct: 364 GSNLRILGVVKSDEGFYQCVAENE-AGNAQSSAQLIVP 400
Score = 65.2 bits (159), Expect = 4e-12
Identities = 34/208 (16%), Positives = 56/208 (26%), Gaps = 63/208 (30%)
Query: 107 NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVG-YPEPYVAWRREDGK 165
+ + + + + +D V G V L CSA P + W++ DG
Sbjct: 5 SELESSHHHHHHGGRRSLHFV--SEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKK-DGL 61
Query: 166 AINY----------NGELV----------------------------------------P 175
+ NG L+ P
Sbjct: 62 ILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGP 121
Query: 176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLI--NGYS 233
+ AF+ TV L C P +W +K + + ++ +G
Sbjct: 122 LRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHW--QKNQQDLNPIPGDSRVVVLPSG-- 177
Query: 234 CHMTLKIRSILSHQFGSYRCVAVNALGE 261
L+I + G YRC A N
Sbjct: 178 ---ALQISRLQPGDSGVYRCSARNPAST 202
Score = 48.7 bits (116), Expect = 1e-06
Identities = 22/103 (21%), Positives = 33/103 (32%), Gaps = 14/103 (13%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P F +N+ A + C V V W+K + VV + I
Sbjct: 313 PWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMK---------NGDVVIPSDYFQIVG 363
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVP 123
+ L + V ++D G+Y C N L V P
Sbjct: 364 GSN----LRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP 402
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 110 bits (275), Expect = 5e-27
Identities = 56/377 (14%), Positives = 95/377 (25%), Gaps = 107/377 (28%)
Query: 19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
F + + C E + W +++ + + R+
Sbjct: 287 EPPKPFITSNNSNPVEDEDAVALTCEPEI-QNTTYLWWV---------NNQSLPVSPRLQ 336
Query: 79 ITFNDHRSWFLHLRDVQETDRGWYMCQI-NTV-PMTSQKGYLQVVVPPRILLDRTSTDVV 136
++ ++ L L V D G Y C I N + S L V+ P S
Sbjct: 337 LSNDNRT---LTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPS-YTY 392
Query: 137 VREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGEL----------------------- 173
R G ++L C A P +W DG + EL
Sbjct: 393 YRPGVNLSLSCHAASNPPAQYSWLI-DGNIQQHTQELFISNITEKNSGLYTCQANNSASG 451
Query: 174 --------------VPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIIT 219
+P N + V C EA + +W N G +
Sbjct: 452 HSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVN--GQSLPV 509
Query: 220 GDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE-----------------T 262
+ S N TL + ++ + +Y C N++
Sbjct: 510 SPRLQLS-NGNR-----TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPI 563
Query: 263 DGFIKVYVNL---------VDGD------------------IFQIRKMSRLHMGAYLCIA 295
+ + I K++ + G Y C
Sbjct: 564 ISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQVLFIAKITPNNNGTYACFV 623
Query: 296 SNGV-VPSVSHRIMVTV 311
SN + S +TV
Sbjct: 624 SNLATGRNNSIVKSITV 640
Score = 92.7 bits (230), Expect = 4e-21
Identities = 54/374 (14%), Positives = 84/374 (22%), Gaps = 107/374 (28%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
+ C E ++ W +S ++ N+
Sbjct: 112 KPSISSNNSKPVEDKDAVAFTCEPET-QDATYLWWVNNQSLPVSPRLQLSNGNR------ 164
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQI-NTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVRE 139
L L +V D Y C+ N V S L V+ P + + R
Sbjct: 165 ------TLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTI-SPLNTSYRS 217
Query: 140 GTEVTLECSAVGYPEPYVAWRREDGKAINYNGELV------------------------- 174
G + L C A P +W +G EL
Sbjct: 218 GENLNLSCHAASNPPAQYSWFV-NGTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNR 276
Query: 175 ------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDD 222
P N V L C E + +W N +
Sbjct: 277 TTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVN--NQSLPVSPR 334
Query: 223 YEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETD-GFIKVYVN---------- 271
+ S N TL + S+ + G Y C N L + + V
Sbjct: 335 LQLSN-DNR-----TLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISP 388
Query: 272 ---------------------------------LVDGDIFQIRKMSRLHMGAYLCIASNG 298
I ++ + G Y C A+N
Sbjct: 389 SYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQELFISNITEKNSGLYTCQANN- 447
Query: 299 VVPSVSHRIMVTVH 312
S + T+
Sbjct: 448 SASGHSRTTVKTIT 461
Score = 80.8 bits (199), Expect = 4e-17
Identities = 42/298 (14%), Positives = 81/298 (27%), Gaps = 69/298 (23%)
Query: 26 EPVANVTATVGKEALMACVVENLREYKVAWVK--MITQTILSIHHKVVTQNKRVSITFND 83
E GKE L+ + +W K + I + + TQ ++
Sbjct: 5 EST-PFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSG 63
Query: 84 HRSWF----LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV---PPRILLDRTSTDVV 136
+ L ++++ + D G+Y + + +++ Q V P+ + ++
Sbjct: 64 REIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSI-SSNNSKP 122
Query: 137 VREGTEVTLECSAVGYPEPYVAW--------------------------RREDG-----K 165
V + V C Y+ W R D +
Sbjct: 123 VEDKDAVAFTCEPETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCE 182
Query: 166 AINYNGELV-----------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKG 214
N P TI + + L CH + P + W
Sbjct: 183 TQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSW----- 237
Query: 215 DMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNL 272
+ + L I +I + GSY C A N+ + + +
Sbjct: 238 --------FVNGTFQQSTQ---ELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITV 284
Score = 70.8 bits (173), Expect = 8e-14
Identities = 39/310 (12%), Positives = 70/310 (22%), Gaps = 82/310 (26%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
N + G+ ++C + + +W T
Sbjct: 204 DAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFV---------------NGTFQQSTQ 248
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKG--YLQVVVPPRILLDRTSTDVVVR 138
L + ++ + G Y CQ N+ ++ + V P ++ V
Sbjct: 249 E------LFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVE 302
Query: 139 EGTEVTLECSAVGYPEPYVAWRREDG-------KAINYNGELV----------------- 174
+ V L C Y+ W + N N L
Sbjct: 303 DEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQ 362
Query: 175 ------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDM 216
P TI + L CH + P + W + G++
Sbjct: 363 NELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLID-GNI 421
Query: 217 IITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGD 276
L I +I G Y C A N+ + +
Sbjct: 422 QQHTQ---------------ELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAEL 466
Query: 277 IFQIRKMSRL 286
+
Sbjct: 467 PKPSISSNNS 476
Score = 34.5 bits (79), Expect = 0.040
Identities = 9/103 (8%), Positives = 23/103 (22%), Gaps = 22/103 (21%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
+ + G ++C + + +W +
Sbjct: 560 DTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRI-----------------NGIPQQH 602
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVP 123
L + + + G Y C + N + + V
Sbjct: 603 TQV----LFIAKITPNNNGTYACFVSNLATGRNNSIVKSITVS 641
Score = 28.0 bits (62), Expect = 5.4
Identities = 19/139 (13%), Positives = 33/139 (23%), Gaps = 37/139 (26%)
Query: 178 LTI----PNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYS 233
LTI N EG + V L H W G+ + +R I GY
Sbjct: 2 LTIESTPFNVAEG----KEVLLLVHNLPQHLFGYSWYK--------GERVDGNRQIIGYV 49
Query: 234 CHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLC 293
+ + + + I+ + + G Y
Sbjct: 50 --------------------IGTQQATPGPAYSGREIIYPNAS-LLIQNIIQNDTGFYTL 88
Query: 294 IASNGVVPSVSHRIMVTVH 312
+ + V+
Sbjct: 89 HVIKSDLVNEEATGQFRVY 107
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 105 bits (262), Expect = 1e-26
Identities = 43/302 (14%), Positives = 77/302 (25%), Gaps = 75/302 (24%)
Query: 19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
P P + + G + C+ + V W K
Sbjct: 10 PSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTF-----------------KTYF 48
Query: 79 ITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVR 138
+++ + T G Y C + +S Y+ V P ++ L + +
Sbjct: 49 NEMVENKKNEWIQEKAEATRTGTYTCSNSNGLTSSI--YVFVRDPAKLFL--VGLPLFGK 104
Query: 139 EGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELV------------------------ 174
E ++ + C + DGK++ + V
Sbjct: 105 EDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCA 164
Query: 175 -----------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNY-WT 210
P++++P T + C + S+N W
Sbjct: 165 AQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWL 224
Query: 211 --NEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKV 268
N + I R Y TL I S G + C A N G + +
Sbjct: 225 KMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTL 284
Query: 269 YV 270
V
Sbjct: 285 KV 286
Score = 48.6 bits (115), Expect = 9e-07
Identities = 22/186 (11%), Positives = 43/186 (23%), Gaps = 48/186 (25%)
Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDG---KAINYNGELV----- 174
PP I ++++V G ++L C +V W + N E +
Sbjct: 12 PPSI--HPAQSELIVEAGDTLSLTCID----PDFVRWTFKTYFNEMVENKKNEWIQEKAE 65
Query: 175 -------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYW 209
P L + + C S
Sbjct: 66 ATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSL 125
Query: 210 TNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSIL-SHQFGSYRCVAVNALGETD-GFIK 267
G + T + + + I+++ ++ RC A
Sbjct: 126 IECDGKSLPTDLTFV-------PNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFT 178
Query: 268 VYVNLV 273
+ V
Sbjct: 179 LKVREA 184
Score = 41.6 bits (97), Expect = 1e-04
Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 5/102 (4%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENL-REYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
P + P + G + C ++++ W+KM Q H V N
Sbjct: 189 PVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQ---HIAQVKHNSWHRGD 245
Query: 81 FNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVV 121
FN R L + + D G +MC NT + L+VV
Sbjct: 246 FNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV 287
Score = 35.9 bits (82), Expect = 0.013
Identities = 24/140 (17%), Positives = 40/140 (28%), Gaps = 25/140 (17%)
Query: 171 GELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLIN 230
GE PP + T+ L C F WT Y + + N
Sbjct: 8 GEPSPPSIHPAQSELIVEAGDTLSLTCIDPDFVR----WTF---------KTYFNEMVEN 54
Query: 231 GYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVD-GDIFQIRKMSRLHMG 289
+ + + G+Y C N L + +YV + D +F +
Sbjct: 55 KKN---EWIQEKAEATRTGTYTCSNSNGLTSS-----IYVFVRDPAKLFLVGLPLFGKED 106
Query: 290 AYL---CIASNGVVPSVSHR 306
+ C ++ V S
Sbjct: 107 SDALVRCPLTDPQVSQYSLI 126
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 101 bits (254), Expect = 2e-26
Identities = 38/251 (15%), Positives = 64/251 (25%), Gaps = 68/251 (27%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLR--EYKVAWVKMITQTILSIHHKVVTQNKRVSI 79
PR + + C + + W K ++
Sbjct: 4 PRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTK---------------NGVELTA 48
Query: 80 TFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVRE 139
T + + + + D G Y C + V ++V P I E
Sbjct: 49 TRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDIT--GHKRSENKNE 106
Query: 140 GTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHT 199
G + + C +VGYP P WR+++ + + G F
Sbjct: 107 GQDAMMYCKSVGYPHPEWMWRKKEN-----------GVFEEISNSSGRF-------FIIN 148
Query: 200 EAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNAL 259
+ LN I+ ED G Y C A N++
Sbjct: 149 KENYTELN---------IVNLQITEDP----------------------GEYECNATNSI 177
Query: 260 GETDGFIKVYV 270
G + V
Sbjct: 178 GSASVSTVLRV 188
Score = 45.2 bits (107), Expect = 6e-06
Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 7/103 (6%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P + G++A+M C + W K I + + R I
Sbjct: 93 PDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISN----SSGRFFII- 147
Query: 82 NDHRSWFLHLRDVQET-DRGWYMCQ-INTVPMTSQKGYLQVVV 122
N L++ ++Q T D G Y C N++ S L+V V
Sbjct: 148 NKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVRV 190
Score = 31.4 bits (71), Expect = 0.24
Identities = 16/139 (11%), Positives = 29/139 (20%), Gaps = 50/139 (35%)
Query: 174 VPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYS 233
P + ++ V L C+ + +L Y K + +T S
Sbjct: 2 NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNAS------- 54
Query: 234 CHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLC 293
+M +I G Y C
Sbjct: 55 -NMEYRINKP----------------------------------------RAEDSGEYHC 73
Query: 294 IASNGVVPSVSHRIMVTVH 312
+ V + + V
Sbjct: 74 VYHF--VSAPKANATIEVK 90
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 101 bits (254), Expect = 3e-26
Identities = 39/250 (15%), Positives = 73/250 (29%), Gaps = 64/250 (25%)
Query: 22 PRFAEPVANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
+ + +VG+ C V + ++ ++W + + +R+S+
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSP-------NQQRISVV 55
Query: 81 FNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREG 140
+ND S L + + D G Y C + T + + V + +++ T +EG
Sbjct: 56 WNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEG 115
Query: 141 TEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTE 200
+ + C V P + W+ +
Sbjct: 116 EDAVIVCDVVSSLPPTIIWKHK-------------------------------------- 137
Query: 201 AFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG 260
G +I D L N L+IR I G+YRC
Sbjct: 138 -------------GRDVILKKDVRFIVLSNN-----YLQIRGIKKTDEGTYRCEGRILAR 179
Query: 261 ETDGFIKVYV 270
F + V
Sbjct: 180 GEINFKDIQV 189
Score = 47.9 bits (114), Expect = 7e-07
Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 12/102 (11%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
F G++A++ C V + + W IL ++ R +
Sbjct: 101 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILK-------KDVRFIVLS 153
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVV 122
N++ L +R +++TD G Y C+ +QV+V
Sbjct: 154 NNY----LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 191
Score = 37.1 bits (86), Expect = 0.003
Identities = 10/54 (18%), Positives = 15/54 (27%)
Query: 259 LGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
L I V N D I + G Y C+ + + V +
Sbjct: 45 LSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF 98
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 104 bits (262), Expect = 6e-26
Identities = 58/303 (19%), Positives = 92/303 (30%), Gaps = 75/303 (24%)
Query: 21 MPRF-AEPVANVTATVGKEALMACVVEN-LREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
+ F + V+ G+ ++ C E AW+ + N+R
Sbjct: 101 LENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIF--------NEYPSYQDNRRFV 152
Query: 79 ITFNDHRSWFLHLRDVQETDRGWYMCQ----INTVPMTSQKGYLQVV-------VPPRIL 127
+ L++ V+++D G Y C + + L + P+I
Sbjct: 153 SQETGN----LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIE 208
Query: 128 LDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI-------NYNGEL------- 173
+ + V +GT V LEC A+G P P + WRR DGK I NG L
Sbjct: 209 V-QFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQ 267
Query: 174 --------------------------VPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLN 207
P + ++V C P
Sbjct: 268 EDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTY 327
Query: 208 YWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIK 267
W K + D ++ G TL I + G Y+CVA N G +
Sbjct: 328 RWL--KNGDPLLTRDR--IQIEQG-----TLNITIVNLSDAGMYQCVAENKHGVIFSSAE 378
Query: 268 VYV 270
+ V
Sbjct: 379 LSV 381
Score = 57.5 bits (139), Expect = 1e-09
Identities = 26/187 (13%), Positives = 46/187 (24%), Gaps = 55/187 (29%)
Query: 123 PPRILLDRTSTDVVV-REGTEVTLECSAVGYPEPYVAWRREDGKAIN---------YNGE 172
P + + + + E +V L C G P+P++ W+ +G ++ +G
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKL-NGTDVDIGMDFRYSVVDGS 63
Query: 173 LV------------------------------------PPMLTIPNQLEGAFVSQTVELH 196
L+ T Q + L
Sbjct: 64 LLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLL 123
Query: 197 CH-TEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA 255
C W + D+ G L I + G+Y CV
Sbjct: 124 CGPPPHSGELSYAWI--FNEYPSYQDNRRFVSQETG-----NLYIAKVEKSDVGNYTCVV 176
Query: 256 VNALGET 262
N +
Sbjct: 177 TNTVTNH 183
Score = 38.7 bits (90), Expect = 0.002
Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 15/101 (14%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P + + + ++ + + C + W+K + + R+ I
Sbjct: 296 PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLK---------NGDPLLTRDRIQIEQ 346
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVV 121
L++ V +D G Y C N + L V+
Sbjct: 347 GT-----LNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382
Score = 32.9 bits (75), Expect = 0.11
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 269 YVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
++VDG + G Y CIA+N VS +
Sbjct: 56 RYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFA 99
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 103 bits (259), Expect = 2e-25
Identities = 40/250 (16%), Positives = 77/250 (30%), Gaps = 60/250 (24%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P + N T + + C E ++ W + + + K + + R+ +
Sbjct: 2 PHIIQL-KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDK--SLDGRIEVK- 57
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREG 140
H S LH++DV+ +D G Y C+ + + + YL + P+ + + T EG
Sbjct: 58 GQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISN--QTIYYSWEG 115
Query: 141 TEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTE 200
+ + C P + WRR + ++P
Sbjct: 116 NPINISCDVKSNPPASIHWRR--------DKLVLPA------------------------ 143
Query: 201 AFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG 260
++ M L+I + FG Y C A N +G
Sbjct: 144 ----------KNTTNLKTYSTGR-----------KMILEIAPTSDNDFGRYNCTATNHIG 182
Query: 261 ETDGFIKVYV 270
+ +
Sbjct: 183 TRFQEYILAL 192
Score = 45.2 bits (107), Expect = 1e-05
Identities = 15/107 (14%), Positives = 32/107 (29%), Gaps = 15/107 (14%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVK---MITQTILSIHHKVVTQNKRVS 78
P+F + G ++C V++ + W + ++ +
Sbjct: 101 PKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLP----------AKNTTNLK 150
Query: 79 ITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPP 124
+ L + + D G Y C N + Q+ L + P
Sbjct: 151 TYSTGRKMI-LEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVP 196
Score = 32.1 bits (73), Expect = 0.25
Identities = 20/140 (14%), Positives = 34/140 (24%), Gaps = 45/140 (32%)
Query: 175 PPMLTIPNQ--LEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGY 232
P ++ + N+ E V L C E P W T D
Sbjct: 2 PHIIQLKNETTYEN----GQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKS-------- 49
Query: 233 SCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYL 292
DG I+V + I+ + G Y
Sbjct: 50 -----------------------------LDGRIEVKGQHGSSSL-HIKDVKLSDSGRYD 79
Query: 293 CIASNGVVPSVSHRIMVTVH 312
C A++ + + + +
Sbjct: 80 CEAASR-IGGHQKSMYLDIE 98
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 102 bits (255), Expect = 2e-25
Identities = 39/253 (15%), Positives = 69/253 (27%), Gaps = 66/253 (26%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P F E + N+ A + C V + V W + + ++ + I
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKE--------IIADGLKYRIQE 56
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRILLD---RTSTDVVV 137
L + V + D Y + N S L+V VP +I L V
Sbjct: 57 FKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHA 116
Query: 138 REGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHC 197
G V+++ G P+P + W++ +L+
Sbjct: 117 LRGEVVSIKIPFSGKPDPVITWQK--------GQDLIDN--------------------- 147
Query: 198 HTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN 257
Y ++I S + + G Y A N
Sbjct: 148 ----------------------NGHY---QVIVTRSFTSLVFPNGVERKDAGFYVVCAKN 182
Query: 258 ALGETDGFIKVYV 270
G +++ V
Sbjct: 183 RFGIDQKTVELDV 195
Score = 51.7 bits (124), Expect = 8e-08
Identities = 26/149 (17%), Positives = 36/149 (24%), Gaps = 55/149 (36%)
Query: 122 VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIP 181
+ P ++ VR + TL C G+P+P V W R GK I +G
Sbjct: 3 MAPHFK--EELRNLNVRYQSNATLVCKVTGHPKPIVKWYR-QGKEIIADG---------- 49
Query: 182 NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIR 241
I L I
Sbjct: 50 --------------------------------LKYRIQEFKGGYH----------QLIIA 67
Query: 242 SILSHQFGSYRCVAVNALGETDGFIKVYV 270
S+ Y+ A N G G + V
Sbjct: 68 SVTDDDATVYQVRATNQGGSVSGTASLEV 96
Score = 50.5 bits (121), Expect = 2e-07
Identities = 17/108 (15%), Positives = 34/108 (31%), Gaps = 10/108 (9%)
Query: 18 KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRV 77
K +P+ E + V A G+ + + + W K ++ N
Sbjct: 101 KIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK---------GQDLIDNNGHY 151
Query: 78 SITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPP 124
+ + + V+ D G+Y+ N + + L V P
Sbjct: 152 QVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVP 199
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 98.8 bits (246), Expect = 4e-25
Identities = 34/167 (20%), Positives = 54/167 (32%), Gaps = 7/167 (4%)
Query: 20 DMPRFAEPVANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
+ F N+T G + C ++ +V W++ Q +
Sbjct: 1 EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRD-GQILELADSTQTQVPLGED 59
Query: 79 ITFNDHRSWFLHLRDVQETDRGWYMCQI-NTV-PMTSQKGYLQVVVPPRILLDRTSTDVV 136
+ L + +Q +D G Y C + SQ GY+ + P L D
Sbjct: 60 EQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFL--EEPEDRT 117
Query: 137 VREGTEVTLECSAVGYPEPY-VAWRREDGKAINYNGELVPPMLTIPN 182
V T L C A G PEP + W ++ G L +P
Sbjct: 118 VAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPG 164
Score = 49.9 bits (119), Expect = 1e-07
Identities = 30/238 (12%), Positives = 54/238 (22%), Gaps = 97/238 (40%)
Query: 123 PPRILLDRTSTDVVVREGTEVTLECSA-VGYPEPYVAWRREDGKAINYNGELVPPMLTIP 181
+ ++ G TL C V P V W R DG+ +
Sbjct: 2 ESPFV--GNPGNITGARGLTGTLRCQLQVQGEPPEVHWLR-DGQILE------------- 45
Query: 182 NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIR 241
+ + G+D +D ++ L+I
Sbjct: 46 ---------------------------LADSTQTQVPLGEDEQDDWIVVS-----QLRIT 73
Query: 242 SILSHQFGSYRCVAVNALGETD---GFIKVYV-----------NLVDGDIFQIR------ 281
S+ G Y+C+ G++ + + F +
Sbjct: 74 SLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGP 133
Query: 282 ----------------------KMSRLH------MGAYLCIASNGVVPSVSHRIMVTV 311
LH ++ C A N + S +TV
Sbjct: 134 PEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKTSSFSCEAHNAKGVTTSRTATITV 191
Score = 37.2 bits (86), Expect = 0.003
Identities = 13/107 (12%), Positives = 29/107 (27%), Gaps = 19/107 (17%)
Query: 21 MPRFAEPVANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVSI 79
+P F E + T ++C + + W++ V +
Sbjct: 106 LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQ-----------------DAVPL 148
Query: 80 TFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPR 125
L + C+ N +T+ + V+P +
Sbjct: 149 ATAPGHGPQRSLHVPGLNKTSSFSCEAHNAKGVTTSRTATITVLPQQ 195
Score = 35.6 bits (82), Expect = 0.009
Identities = 8/43 (18%), Positives = 14/43 (32%)
Query: 270 VNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
+ + +I + G Y C+ G VS V +
Sbjct: 62 DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLE 104
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 100 bits (251), Expect = 2e-24
Identities = 54/305 (17%), Positives = 85/305 (27%), Gaps = 73/305 (23%)
Query: 21 MPRFA-EPVANVTATVGKEALMAC-VVENLREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
P + E + V G + C L + W+ + +TQ+KRVS
Sbjct: 115 SPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMS--------SSMEPITQDKRVS 166
Query: 79 ITFNDHRSWFLHLRDVQETD-RGWYMCQ-INTV-PMTSQKGYLQVVV----------PPR 125
N L+ +V D + Y C QK + V P
Sbjct: 167 QGHNGD----LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSF 222
Query: 126 ILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDG-------KAINYNGEL----- 173
+ T++ +V G ++ LEC A G P P +AW ++ G K N+N L
Sbjct: 223 MYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNV 282
Query: 174 ----------------------------VPPMLTIPNQLEGAFVSQTVELHCHTEAFPAS 205
P + + L C P
Sbjct: 283 SEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKP 342
Query: 206 LNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGF 265
W G+ + + + + T+ R Y+C N G
Sbjct: 343 TVQWMVN-GEPLQSAPPNPNREVAGD-----TIIFRDTQISSRAVYQCNTSNEHGYLLAN 396
Query: 266 IKVYV 270
V V
Sbjct: 397 AFVSV 401
Score = 62.6 bits (152), Expect = 3e-11
Identities = 35/200 (17%), Positives = 59/200 (29%), Gaps = 67/200 (33%)
Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAIN--------- 168
++ PP I +++ D +V + +EC A G P P W R + + N
Sbjct: 11 NELTQPPTIT-KQSAKDHIVDPRDNILIECEAKGNPAPSFHWTR-NSRFFNIAKDPRVSM 68
Query: 169 --YNGELVPPMLTIPNQLE-------------GAFVS----------------------- 190
+G LV + E G +S
Sbjct: 69 RRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVV 128
Query: 191 ---QTVELHCH-TEAFPASLNYWTNEKGDMIITGDDYEDSRLI---NGYSCHMTLKIRSI 243
+ L C+ P+ + +W + IT +D R+ NG L ++
Sbjct: 129 QEGAPLTLQCNPPPGLPSPVIFWMSS-SMEPIT----QDKRVSQGHNG-----DLYFSNV 178
Query: 244 LSH-QFGSYRCVAVNALGET 262
+ Y C A T
Sbjct: 179 MLQDMQTDYSCNARFHFTHT 198
Score = 37.9 bits (88), Expect = 0.003
Identities = 15/104 (14%), Positives = 32/104 (30%), Gaps = 18/104 (17%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVK---MITQTILSIHHKVVTQNKRVS 78
P + + N+ G++ + C + V W+ + + + +V
Sbjct: 313 PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDT---- 368
Query: 79 ITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVV 121
+ RD Q + R Y C N ++ V+
Sbjct: 369 ----------IIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL 402
Score = 28.3 bits (63), Expect = 3.9
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 287 HMGAYLCIASNGVVPSVSHRIMVTVH 312
+ G Y C A N ++S+RI + V
Sbjct: 88 YEGEYQCFARNKFGTALSNRIRLQVS 113
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 99.7 bits (248), Expect = 1e-23
Identities = 47/303 (15%), Positives = 80/303 (26%), Gaps = 58/303 (19%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENL-REYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
P + A+ G+E + C ++++ W + +QT L +
Sbjct: 212 PVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHG-----D 266
Query: 81 FNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLD-RTSTDVVVR 138
FN R L + + D G +MC NT + L+VV I + +T V V
Sbjct: 267 FNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVN 326
Query: 139 EGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPM-----------LTIPN----- 182
+G V L +P+P + E P L +
Sbjct: 327 DGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTE 386
Query: 183 --------QLEGAFVSQTVEL-------------------HCHTEAFPASLNYWT----- 210
+ + C FP W
Sbjct: 387 GGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGT 446
Query: 211 --NEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKV 268
++ +S + I S G+ C A N +G+T +
Sbjct: 447 EQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNF 506
Query: 269 YVN 271
Sbjct: 507 AFK 509
Score = 86.3 bits (213), Expect = 5e-19
Identities = 46/311 (14%), Positives = 88/311 (28%), Gaps = 70/311 (22%)
Query: 19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
D + ++ + L+ C + + E +K L + + K
Sbjct: 112 RDPAKLFLVDRSLYGKEDNDTLVRCPLTDP-EVTNYSLKGCQGKPLPKDLRFIPDPKAG- 169
Query: 79 ITFNDHRSWFLHLRDVQET-DRGWYMCQINTVPMTSQKGYLQVVVPPRI----LLDRTST 133
+ ++ V+ R C ++ + + V P ++ +
Sbjct: 170 ----------IMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKA 219
Query: 134 DVVVREGTEVTLECSAVGYPEPY-VAWRREDGK--------------------------- 165
++REG E T+ C+ W+RE+ +
Sbjct: 220 SYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISS 279
Query: 166 ------------AINYNGE---------LVPPMLTI-PNQLEGAFVS--QTVELHCHTEA 201
A N G + + I P FV+ + V+L EA
Sbjct: 280 ARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEA 339
Query: 202 FPASLNY-WTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG 260
FP + W +DY S + L + + + G+Y + N+
Sbjct: 340 FPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDV 399
Query: 261 ETDGFIKVYVN 271
VYVN
Sbjct: 400 NAAIAFNVYVN 410
Score = 75.5 bits (185), Expect = 2e-15
Identities = 37/299 (12%), Positives = 70/299 (23%), Gaps = 76/299 (25%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P +++ VG E + C V W I
Sbjct: 37 PSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFEILDETNENKQNE----------- 81
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREG 140
+ T+ G Y C + S Y+ V P ++ L + +E
Sbjct: 82 -------WITEKAEATNTGKYTCTNKHG---LSNSIYVFVRDPAKLFL--VDRSLYGKED 129
Query: 141 TEVTLECSAVGYPEPYVAWRREDGKAINYNGELV-------------------------- 174
+ + C + + GK + + +
Sbjct: 130 NDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVD 189
Query: 175 ---------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNY-WTNE 212
P++++ + + C + +S+ W E
Sbjct: 190 QEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRE 249
Query: 213 KGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN 271
+ Y TL I S + G + C A N G + + V
Sbjct: 250 NSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVV 308
Score = 51.6 bits (123), Expect = 1e-07
Identities = 22/200 (11%), Positives = 48/200 (24%), Gaps = 47/200 (23%)
Query: 98 DRGWYMCQI-----NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGY 152
++C + + PP I +D++VR G E+ L C+ G+
Sbjct: 6 GAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHP--GKSDLIVRVGDEIRLLCTDPGF 63
Query: 153 PEPYVAWRREDGKAINYNGELV------------------------------PPMLTIPN 182
+ + D N E + P L + +
Sbjct: 64 VKWT--FEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVD 121
Query: 183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRS 242
+ + C + +G + + + I+S
Sbjct: 122 RSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFI-------PDPKAGIMIKS 174
Query: 243 IL-SHQFGSYRCVAVNALGE 261
+ ++ C
Sbjct: 175 VKRAYHRLCLHCSVDQEGKS 194
Score = 41.6 bits (97), Expect = 2e-04
Identities = 11/99 (11%), Positives = 23/99 (23%), Gaps = 3/99 (3%)
Query: 31 VTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSW--F 88
+T ++ CV E + W + + ++ +
Sbjct: 416 LTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQ 475
Query: 89 LHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRI 126
+ G C+ N V TS +
Sbjct: 476 SSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKE 514
Score = 36.2 bits (83), Expect = 0.011
Identities = 19/101 (18%), Positives = 27/101 (26%), Gaps = 20/101 (19%)
Query: 171 GELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLIN 230
GE PP + V + L C F WT +E N
Sbjct: 32 GEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGFVK----WT------------FEILDETN 75
Query: 231 GYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN 271
+ + G Y C + L + I V+V
Sbjct: 76 ENKQN-EWITEKAEATNTGKYTCTNKHGLSNS---IYVFVR 112
Score = 29.6 bits (66), Expect = 1.3
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 271 NLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
N + + K + G Y C +G +S+ I V V
Sbjct: 75 NENKQNEWITEKAEATNTGKYTCTNKHG----LSNSIYVFVR 112
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 94.5 bits (235), Expect = 2e-23
Identities = 50/254 (19%), Positives = 89/254 (35%), Gaps = 68/254 (26%)
Query: 21 MPRFAEPVA--NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
MP + P N TA G+E +C E ++W + + K++ +N++
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR---------NGKLIEENEKYI 52
Query: 79 ITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRILLDRTSTDVVV 137
+ ++ L +R++ +D G Y+C+ N ++ +LQV V P I+ +
Sbjct: 53 LKGSNTE---LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHII---QLKNETT 106
Query: 138 REGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHC 197
E +VTL C A G P P + W+R
Sbjct: 107 YENGQVTLVCDAEGEPIPEITWKR------------------------------------ 130
Query: 198 HTEAFPASLNYWTNEKGDMIITGDDYEDSRL-INGYSCHMTLKIRSILSHQFGSYRCVAV 256
G GD D R+ + G +L I+ + G Y C A
Sbjct: 131 -------------AVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAA 177
Query: 257 NALGETDGFIKVYV 270
+ +G + + +
Sbjct: 178 SRIGGHQKSMYLDI 191
Score = 31.3 bits (71), Expect = 0.27
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 269 YVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
Y+ +R + G Y+C A+N + + V
Sbjct: 51 YILKGSNTELTVRNIINSDGGPYVCRATNK-AGEDEKQAFLQVF 93
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 96.4 bits (240), Expect = 3e-23
Identities = 51/304 (16%), Positives = 90/304 (29%), Gaps = 76/304 (25%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
PRF + + G A C + +V W K K V + +I F
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKK---------GKKVNSQRFETIEF 57
Query: 82 NDHRSWFLHLRDVQ-ETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILL-----DRTSTD 134
++ L ++ ++ D Y C N+V + L V+ ++ D
Sbjct: 58 DESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQL 117
Query: 135 VVVREGTEVTLECSAVGYPEPYVAWRREDGKAINY-----------NGEL---------- 173
VV T+ C+A G P+P + W + D ++ +G L
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFK-DFLPVDPSASNGRIKQLRSGALQIESSEETDQ 176
Query: 174 ---------------------------VPPMLTIPNQLEGAFVSQTVELHCHTEAFPASL 206
V P +I V + C P
Sbjct: 177 GKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPY 236
Query: 207 NYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFI 266
W +G +T + + G + +Y CVA+++LG +
Sbjct: 237 VKWM--QGAEDLT----PEDDMPVG-----RNVLELTDVKDSANYTCVAMSSLGVIEAVA 285
Query: 267 KVYV 270
++ V
Sbjct: 286 QITV 289
Score = 57.1 bits (138), Expect = 1e-09
Identities = 35/194 (18%), Positives = 55/194 (28%), Gaps = 59/194 (30%)
Query: 120 VVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGK-------------- 165
PPR + + D + G + C A G P+P V W ++ K
Sbjct: 3 GEEPPRFI--KEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES 60
Query: 166 ----------------------AINYNGELV----------PPMLTIPNQLEGAFVSQTV 193
A N GE+ + + ++ + V
Sbjct: 61 AGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120
Query: 194 E------LHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQ 247
E + C P W K + + + R+ S L+I S
Sbjct: 121 ERTRTATMLCAASGNPDPEITWF--KDFLPVDPSA-SNGRIKQLRSG--ALQIESSEETD 175
Query: 248 FGSYRCVAVNALGE 261
G Y CVA N+ G
Sbjct: 176 QGKYECVATNSAGV 189
Score = 45.6 bits (108), Expect = 9e-06
Identities = 15/111 (13%), Positives = 32/111 (28%), Gaps = 17/111 (15%)
Query: 17 EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKR 76
+ PRF+ + G + CV V W++ + +T
Sbjct: 201 VQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQ---------GAEDLTPEDD 251
Query: 77 VSITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRI 126
+ + L D Y C ++++ + + V P+
Sbjct: 252 MPVGR-------NVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKA 295
Score = 30.6 bits (69), Expect = 0.63
Identities = 9/43 (20%), Positives = 14/43 (32%)
Query: 270 VNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
+ + QI G Y C+A+N S + V
Sbjct: 158 IKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVR 200
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 93.7 bits (233), Expect = 3e-23
Identities = 52/255 (20%), Positives = 95/255 (37%), Gaps = 73/255 (28%)
Query: 21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
M F E V+ G++A + C V + V+W+ + + + + R ++
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLY-HNEEVTT------ISDNRFAML 54
Query: 81 FNDHRSWFLHLRDVQETDRGWYMC--QINTVPMTSQKGYLQVV-VPPRILLDRTSTDVVV 137
N++ L + ++ ++D G Y C ++ + + +V VPP I + + S +
Sbjct: 55 ANNN----LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATA 110
Query: 138 REGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHC 197
G E+T C A G PEP ++W R NG+L+
Sbjct: 111 ERGEEMTFSCRASGSPEPAISWFR--------NGKLIEE--------------------- 141
Query: 198 HTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN 257
I+ G + L +R+I++ G Y C A N
Sbjct: 142 ---------------NEKYILKGSNT-------------ELTVRNIINSDGGPYVCRATN 173
Query: 258 ALGETD--GFIKVYV 270
GE + F++V+V
Sbjct: 174 KAGEDEKQAFLQVFV 188
Score = 53.2 bits (128), Expect = 1e-08
Identities = 27/237 (11%), Positives = 54/237 (22%), Gaps = 98/237 (41%)
Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINY----------NGE 172
+ ++G + + C P P V+W + + N
Sbjct: 2 MLTFR--EVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLY-HNEEVTTISDNRFAMLANNN 58
Query: 173 L-----------------------------------VPPMLTIPNQLE--GAFVSQTVEL 195
L VPP +++P + A + +
Sbjct: 59 LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTF 118
Query: 196 HCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA 255
C P W + +I ++ ++ G + L +R+I
Sbjct: 119 SCRASGSPEPAISWF--RNGKLIEENEK---YILKGSNT--ELTVRNI------------ 159
Query: 256 VNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
G Y+C A+N + + V
Sbjct: 160 ----------------------------INSDGGPYVCRATN-KAGEDEKQAFLQVF 187
Score = 49.4 bits (118), Expect = 2e-07
Identities = 22/107 (20%), Positives = 46/107 (42%), Gaps = 13/107 (12%)
Query: 17 EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKR 76
P + N TA G+E +C E ++W + + K++ +N++
Sbjct: 94 NVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR---------NGKLIEENEK 144
Query: 77 VSITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVV 122
+ ++ L +R++ +D G Y+C+ N ++ +LQV V
Sbjct: 145 YILKGSNTE---LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 188
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 98.2 bits (244), Expect = 4e-23
Identities = 49/390 (12%), Positives = 87/390 (22%), Gaps = 112/390 (28%)
Query: 18 KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRV 77
+P A V V + +V+ WV H +
Sbjct: 45 RPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVF---------KHSSLNCQPHF 95
Query: 78 SITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVV 136
+ S + + + ET G Y+ I + + + + L R
Sbjct: 96 DLQNRGVVS--MVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRP--YFR 151
Query: 137 VREGTEVTLECSAVGYPEPYVAWRREDG------------------------------KA 166
E + L C + PEP V W D A
Sbjct: 152 KMEN-QDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCA 210
Query: 167 INYNGE----------LVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNY-WTNEKGD 215
N G P T+P V + + + C W E
Sbjct: 211 RNELGRECTRLFTIDLNQTPQTTLPQLF--LKVGEPLWIRCKAVHVNHGFGLTWELE-NK 267
Query: 216 MIITGDDYEDSRLINGYSCHM--TLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV--- 270
+ G+ +E S + + S+ + G Y C + ++ + +
Sbjct: 268 ALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS-ALVTIVEKGF 326
Query: 271 ----------------------------------------------NLVDGDIFQIRKMS 284
L +G
Sbjct: 327 INATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNH 386
Query: 285 RLHMGAYLCIASNGVVPSVSHRIMVTVHCK 314
+ G Y+ A N + + + K
Sbjct: 387 KHQPGEYIFHAENDDA-QFTKMFTLNIRRK 415
Score = 94.4 bits (234), Expect = 9e-22
Identities = 36/290 (12%), Positives = 75/290 (25%), Gaps = 48/290 (16%)
Query: 21 MPRFAEPVANVTATVGKEALMACVVENLR-EYKVAWVKMITQTILSIHHKVVTQNKRVSI 79
+ + VG+ + C ++ + + W + + S
Sbjct: 227 NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKA----LEEGNYFEMSTYST 282
Query: 80 TFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVR 138
R F + V D G+Y C SQ + +V I +S D +
Sbjct: 283 NRTMIRILFAFVSSVARNDTGYYTCSSSKHP---SQSALVTIVEKGFINATNSSEDYEID 339
Query: 139 EGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVP--PMLTIPNQL------------ 184
+ E YP+ W K+ + + ++
Sbjct: 340 QYEEFCFSVRFKAYPQIRCTWTF-SRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAE 398
Query: 185 -EGAFVSQTVEL-----------------HCHTEAFPASLNYWTNEKGDMIITGDDYEDS 226
+ A ++ L C ++ +P W ++ +
Sbjct: 399 NDDAQFTKMFTLNIRRKPQVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEG 458
Query: 227 RLINGYSCHM--TLKIRSILSHQ----FGSYRCVAVNALGETDGFIKVYV 270
+ + S L+ +C A N+LG + I +
Sbjct: 459 VWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNS 508
Score = 57.0 bits (137), Expect = 2e-09
Identities = 25/226 (11%), Positives = 42/226 (18%), Gaps = 67/226 (29%)
Query: 93 DVQETDRGWYMC-----QINTVPMTSQKGYLQVVVPPRILLDRTS----------TDVVV 137
+ D C + N + Y V P L V V
Sbjct: 1 ETGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEV 60
Query: 138 REGTEVTLECSAVGYPEPYVAWRREDG--------------------------------- 164
+TL+ W +
Sbjct: 61 DVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLL 120
Query: 165 KAINYNGE---------LVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGD 215
+ + T+ +Q L C +E+ P + W
Sbjct: 121 FIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDA-LVCISESVPEPIVEWVLCDSQ 179
Query: 216 MIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE 261
++ + + RC A N LG
Sbjct: 180 GESCKEESPAVVKKE---------EKVLHELFGTDIRCCARNELGR 216
Score = 35.8 bits (82), Expect = 0.014
Identities = 10/105 (9%), Positives = 25/105 (23%), Gaps = 2/105 (1%)
Query: 34 TVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVT-QNKRVSITFNDHRSWFLHLR 92
+ +C + W K ++ N++ + L
Sbjct: 420 AEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLN 479
Query: 93 DVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRILLDRTSTDVV 136
+ C N++ + + L P + D +
Sbjct: 480 MSEAIKGFLVKCCAYNSLGTSCETILLNSPGPFPFIQDGGTKHHH 524
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 96.1 bits (239), Expect = 9e-23
Identities = 48/301 (15%), Positives = 82/301 (27%), Gaps = 71/301 (23%)
Query: 21 MPRF-AEPVANVTATVGKEALMACVVEN-LREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
+ F AE V T G + C W+ + + +R
Sbjct: 100 LQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLN------EFPNFIPADGRRFV 153
Query: 79 ITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVV-----------PPRI 126
+ L++ + +D G Y C + + ++ + + P I
Sbjct: 154 SQTTGN----LYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSI 209
Query: 127 LLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDG----KAINYNGEL--------- 173
+ D G VTLEC A G P P + WR+ DG K ++ L
Sbjct: 210 KA-KFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFED 268
Query: 174 ------------------------VPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYW 209
P A + + C P W
Sbjct: 269 EGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRW 328
Query: 210 TNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVY 269
+ + + + G L+ ++ G Y+CVA N G ++
Sbjct: 329 L--RDGQPLASQNR--IEVSGG-----ELRFSKLVLEDSGMYQCVAENKHGTVYASAELT 379
Query: 270 V 270
V
Sbjct: 380 V 380
Score = 74.9 bits (184), Expect = 2e-15
Identities = 43/310 (13%), Positives = 69/310 (22%), Gaps = 84/310 (27%)
Query: 22 PRFAE---PVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
P F E + ++ + C W T+ + +
Sbjct: 5 PVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGD-- 62
Query: 79 ITFNDHRSWFLHLRDVQETDRGWYMCQI-NTV-PMTSQKGYLQVVVPPRILLDRTSTDVV 136
+ V+ D G Y C N + S++ L+ V
Sbjct: 63 ---------LVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFS-AEERDPVK 112
Query: 137 VREGTEVTLECSAV-GYPEPYVAWRREDGK----------AINYNGELV----------- 174
+ EG V CS YP W + G L
Sbjct: 113 ITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGN 172
Query: 175 ----------------------------------PPMLTIPNQLEGAFVSQTVELHCHTE 200
P + A Q V L C
Sbjct: 173 YSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAF 232
Query: 201 AFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG 260
P W G S+ ++ L I+++ G+Y C A N G
Sbjct: 233 GNPVPQIKWRKLDGSQT--------SKWLSSEP---LLHIQNVDFEDEGTYECEAENIKG 281
Query: 261 ETDGFIKVYV 270
++ +
Sbjct: 282 RDTYQGRIII 291
Score = 59.1 bits (143), Expect = 5e-10
Identities = 33/189 (17%), Positives = 47/189 (24%), Gaps = 57/189 (30%)
Query: 123 PPRILLDRTSTDVVVREGTE---VTLECSAVGYPEPYVAWRREDGKAINYNGE----LVP 175
P + EG+ VTL C A P W+ +G + + LV
Sbjct: 4 GPVFE--EQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKM-NGTELKMGPDSRYRLVA 60
Query: 176 PMLTIPNQLE---------------GAFVS--------------------------QTVE 194
L I N ++ G VS V
Sbjct: 61 GDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVM 120
Query: 195 LHCH-TEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC 253
C +PA W + I D G L I + G+Y C
Sbjct: 121 FTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG-----NLYIAKTEASDLGNYSC 175
Query: 254 VAVNALGET 262
A + +
Sbjct: 176 FATSHIDFI 184
Score = 32.9 bits (75), Expect = 0.13
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 270 VNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
LV GD+ + G+Y C+A+N VS +
Sbjct: 56 YRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFG 98
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 92.2 bits (229), Expect = 1e-22
Identities = 41/174 (23%), Positives = 62/174 (35%), Gaps = 21/174 (12%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
+ +T + G+ + C VE + E + WVK V ++
Sbjct: 3 LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKD--------GAVVQNLDQLYIPVS 54
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQI-NTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVRE 139
H FL L+ V+ +D G Y CQ+ + SQ +L V P D+ V
Sbjct: 55 EQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFT--VEPKDLAVPP 112
Query: 140 GTEVTLECSAVGYPEPY-VAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQT 192
L C AVG PEP + W R + P+ L V+Q+
Sbjct: 113 NAPFQLSCEAVGPPEPVTIVWWR--------GTTKIGGPAPSPSVLNVTGVTQS 158
Score = 63.7 bits (155), Expect = 2e-12
Identities = 26/188 (13%), Positives = 43/188 (22%), Gaps = 63/188 (33%)
Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDG------------------ 164
+++ + V +G V L CS G EP + W ++
Sbjct: 2 GLKLM--GAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWI 59
Query: 165 ------------------KAINYNGE----------LVPPMLTIPNQLEGAFVSQTVELH 196
+ + P T+ + + +L
Sbjct: 60 GFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLS 119
Query: 197 CHTEAFPASLNY-WTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA 255
C P + W +G I G S L Q + C A
Sbjct: 120 CEAVGPPEPVTIVW--WRGTTKIGGPAPSPSVL------------NVTGVTQSTMFSCEA 165
Query: 256 VNALGETD 263
N G
Sbjct: 166 HNLKGLAS 173
Score = 39.8 bits (93), Expect = 4e-04
Identities = 9/54 (16%), Positives = 17/54 (31%)
Query: 259 LGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
+ D ++ + R G Y C +G +S + +TV
Sbjct: 43 VQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE 96
Score = 30.5 bits (69), Expect = 0.44
Identities = 8/86 (9%), Positives = 17/86 (19%), Gaps = 20/86 (23%)
Query: 21 MPRFAEPVANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVSI 79
+P F ++ ++C + W + I
Sbjct: 98 VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWR-----------------GTTKI 140
Query: 80 TFNDHRSWFLHLRDVQETDRGWYMCQ 105
L T + C+
Sbjct: 141 GGPAPSP--SVLNVTGVTQSTMFSCE 164
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 91.3 bits (227), Expect = 2e-22
Identities = 35/253 (13%), Positives = 73/253 (28%), Gaps = 70/253 (27%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P + + +VT +G+ A ++C + + W + K + Q+++ ++
Sbjct: 8 PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYR---------FGKELIQSRKYKMSS 58
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRILLDRTS-TDVVVRE 139
+ L + ++ D G Y C N V L + P+
Sbjct: 59 DGRTH-TLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAV 117
Query: 140 GTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHT 199
G+ + L +G P P + W +L+
Sbjct: 118 GSTLRLHVMYIGRPVPAMTWFH--------GQKLLQN----------------------- 146
Query: 200 EAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSIL--SHQFGSYRCVAVN 257
+E + T L ++++ +H G Y+ N
Sbjct: 147 -----------SENITIENTEHYT-------------HLVMKNVQRKTHA-GKYKVQLSN 181
Query: 258 ALGETDGFIKVYV 270
G D + V +
Sbjct: 182 VFGTVDAILDVEI 194
Score = 52.0 bits (125), Expect = 3e-08
Identities = 27/150 (18%), Positives = 40/150 (26%), Gaps = 59/150 (39%)
Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPN 182
P I + DV + G L C VG P P + W R G+ +
Sbjct: 7 APGIR--KEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYR--------FGKELIQ------ 50
Query: 183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRS 242
+ K M G + TL + +
Sbjct: 51 ----------------------------SRKYKMSSDGRTH-------------TLTVMT 69
Query: 243 ILSHQFGSYRCVAVNALGE--TDGFIKVYV 270
G Y C+A N +GE T + +
Sbjct: 70 EEQEDEGVYTCIATNEVGEVETSSKLLLQA 99
Score = 41.2 bits (97), Expect = 1e-04
Identities = 15/107 (14%), Positives = 32/107 (29%), Gaps = 12/107 (11%)
Query: 17 EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKR 76
P VG + + + W K++ ++
Sbjct: 99 ATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFH---------GQKLLQNSEN 149
Query: 77 VSITFNDHRSWFLHLRDVQ-ETDRGWYMCQI-NTVPMTSQKGYLQVV 121
++I N L +++VQ +T G Y Q+ N +++
Sbjct: 150 ITIE-NTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 92.8 bits (230), Expect = 5e-22
Identities = 43/291 (14%), Positives = 82/291 (28%), Gaps = 59/291 (20%)
Query: 27 PVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRS 86
P + V ++ C V W +M + + ++ + S
Sbjct: 6 PGPELVLNVSSTFVLTCSGSA----PVVWERMSQEPP-----------QEMAKAQDGTFS 50
Query: 87 WFLHLRDVQETDRGWYMCQINTVPM--TSQKGYLQVVVP----PRILLDRTSTDVVVREG 140
L L ++ D G Y C N T ++ L + VP + D + + E
Sbjct: 51 SVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEI 110
Query: 141 TEVTLECSAVGYPEPYVAWRREDG-------------------------KAINYNGELV- 174
TE+T+ C P+ V + G K + E+
Sbjct: 111 TEITIPCRVTD-PQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDS 169
Query: 175 -----------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDY 223
+++ + + L C WT + + +
Sbjct: 170 DAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPV 229
Query: 224 EDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVD 274
D L Y L I S G+Y C ++ + + + +V+
Sbjct: 230 TDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVE 280
Score = 43.2 bits (101), Expect = 5e-05
Identities = 14/102 (13%), Positives = 29/102 (28%), Gaps = 6/102 (5%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
+ G+ + C+V W ++ ++V +
Sbjct: 182 INVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKES-----GRLVEPVTDFLLDM 236
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVV 122
H LH+ + D G Y C +V + + + V
Sbjct: 237 PYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITV 278
Score = 34.3 bits (78), Expect = 0.043
Identities = 22/173 (12%), Positives = 40/173 (23%), Gaps = 60/173 (34%)
Query: 189 VSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQF 248
VS T L C A W + +D + L + ++
Sbjct: 14 VSSTFVLTCSGSAPVV----WERMSQEPPQEMAKAQDGTFSS------VLTLTNLTGLDT 63
Query: 249 GSYRCVAVNALGE-TDGFIKVYVNLVDGDIFQIRKMS----------------------- 284
G Y C ++ G TD ++Y+ + D + + +
Sbjct: 64 GEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQ 123
Query: 285 --------------------------RLHMGAYLCIASNGVVPSVSHRIMVTV 311
+Y+C + G S V
Sbjct: 124 LVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYR 176
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 90.2 bits (224), Expect = 7e-22
Identities = 41/253 (16%), Positives = 71/253 (28%), Gaps = 66/253 (26%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P F E + N+ A + C V + V W + +++ + I
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQ--------GKEIIADGLKYRIQE 56
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRILLDRTS---TDVVV 137
L + V + D Y + N S L+V VP +I L +T V
Sbjct: 57 FKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHA 116
Query: 138 REGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHC 197
G V+++ G P+P + W++
Sbjct: 117 LRGEVVSIKIPFSGKPDPVITWQKG----------------------------------- 141
Query: 198 HTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN 257
D+I Y ++I S + + G Y A N
Sbjct: 142 ----------------QDLIDNNGHY---QVIVTRSFTSLVFPNGVERKDAGFYVVCAKN 182
Query: 258 ALGETDGFIKVYV 270
G +++ V
Sbjct: 183 RFGIDQKTVELDV 195
Score = 52.4 bits (126), Expect = 2e-08
Identities = 26/149 (17%), Positives = 37/149 (24%), Gaps = 55/149 (36%)
Query: 122 VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIP 181
+ P ++ VR + TL C G+P+P V W R GK I
Sbjct: 3 MAPHFK--EELRNLNVRYQSNATLVCKVTGHPKPIVKWYR-QGKEI-------------- 45
Query: 182 NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIR 241
L Y + + L I
Sbjct: 46 --------------------IADGLKYR------IQEFKGG------------YHQLIIA 67
Query: 242 SILSHQFGSYRCVAVNALGETDGFIKVYV 270
S+ Y+ A N G G + V
Sbjct: 68 SVTDDDATVYQVRATNQGGSVSGTASLEV 96
Score = 52.0 bits (125), Expect = 3e-08
Identities = 16/105 (15%), Positives = 33/105 (31%), Gaps = 10/105 (9%)
Query: 17 EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKR 76
K +P+ E + V A G+ + + + W K ++ N
Sbjct: 100 AKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK---------GQDLIDNNGH 150
Query: 77 VSITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQV 120
+ + + V+ D G+Y+ N + + L V
Sbjct: 151 YQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 92.9 bits (230), Expect = 4e-21
Identities = 42/331 (12%), Positives = 85/331 (25%), Gaps = 37/331 (11%)
Query: 17 EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKR 76
P + +VG++ ++ C + + + V K
Sbjct: 220 GYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKT 279
Query: 77 VSITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRI-LLDRTSTD 134
S + L + V +D+G Y C + + +++V P + +
Sbjct: 280 QSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESL 339
Query: 135 VVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPP-MLTIP------------ 181
V G V + +GYP P + W + +G + N + +LTI
Sbjct: 340 VEATVGERVRIPAKYLGYPPPEIKWYK-NGIPLESNHTIKAGHVLTIMEVSERDTGNYTV 398
Query: 182 ---NQLEGAFVSQTVELHCHT----EAFPASLNYWTNEKGDMI-----ITGDD------- 222
N + S V L + + + G +
Sbjct: 399 ILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHW 458
Query: 223 -YEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIR 281
++ ++ S E + + + + +
Sbjct: 459 YWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLV 518
Query: 282 KMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
+ Y C A N V I V
Sbjct: 519 IQAANVSALYKCEAVN-KVGRGERVISFHVT 548
Score = 84.8 bits (209), Expect = 2e-18
Identities = 51/402 (12%), Positives = 89/402 (22%), Gaps = 118/402 (29%)
Query: 18 KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRV 77
D+PR + +T + C + + W+ Q+ Q V
Sbjct: 28 SLDLPRLSIQKDILTIKANTTLQITCRGQ----RDLDWLWPNNQSGS-------EQRVEV 76
Query: 78 SITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILL---DRTST 133
+ + L + V D G Y C T + Y+Q P I
Sbjct: 77 TECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVV 136
Query: 134 DVVVREGTEVTLECSAVGYPEPYVAWRREDG----------------------------- 164
+ + V + C R
Sbjct: 137 YITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAG 196
Query: 165 ----KAINYNGEL-------------VPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLN 207
+A + + ++ P+ V + + L+C
Sbjct: 197 MVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGI 256
Query: 208 YWTNEKGDMIITGDDYEDSRLINGYSCHM-----TLKIRSILSHQFGSYRCVAVNALGET 262
+ E + L M TL I + G Y C A + L
Sbjct: 257 DFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK 316
Query: 263 DGFIKVYV---------------------------------------------------N 271
V V
Sbjct: 317 KNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHT 376
Query: 272 LVDGDIFQIRKMSRLHMGAYLCIASNGV-VPSVSHRIMVTVH 312
+ G + I ++S G Y I +N + SH + + V+
Sbjct: 377 IKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVY 418
Score = 82.5 bits (203), Expect = 1e-17
Identities = 28/283 (9%), Positives = 64/283 (22%), Gaps = 63/283 (22%)
Query: 17 EKPDMPRFAEPVANVTATVGKEALMACVVE------------------------NLREYK 52
P + + + G + C V +
Sbjct: 419 VPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTN 478
Query: 53 VAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPM 111
+ + NK L Y C+ +N V
Sbjct: 479 PYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGR 538
Query: 112 TSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNG 171
+ V P I L D+ E V+L C+A + W + + + +
Sbjct: 539 GERVISFHVTRGPEITLQP---DMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHV 595
Query: 172 ELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLING 231
+P + + N
Sbjct: 596 GELPTPVCKNLDTL-----------------------------------WKLNATMFSNS 620
Query: 232 YSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVD 274
+ + +++++ G Y C+A + + + + +++
Sbjct: 621 TNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLE 663
Score = 81.7 bits (201), Expect = 2e-17
Identities = 32/265 (12%), Positives = 68/265 (25%), Gaps = 74/265 (27%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVT--------- 72
++ T + + C + + W K+ Q + ++ T
Sbjct: 550 GPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTL 609
Query: 73 -QNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVV----PPRI 126
+ + + + + L++ D+G Y+C + Q+ V P I
Sbjct: 610 WKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTI 669
Query: 127 LLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEG 186
+ G + + C+A G P P + W + + E +
Sbjct: 670 T--GNLENQTTSIGESIEVSCTASGNPPPQIMWFK--------DNETLVE---------- 709
Query: 187 AFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSH 246
+ ++ + L IR +
Sbjct: 710 -------------------------------------DSGIVLKDGNR--NLTIRRVRKE 730
Query: 247 QFGSYRCVAVNALGETDGFIKVYVN 271
G Y C A + LG +
Sbjct: 731 DEGLYTCQACSVLGCAKVEAFFIIE 755
Score = 54.4 bits (130), Expect = 2e-08
Identities = 15/106 (14%), Positives = 39/106 (36%), Gaps = 13/106 (12%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P + N T ++G+ ++C ++ W K ++ + ++ + +
Sbjct: 667 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKD---------NETLVEDSGIVLKD 717
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRI 126
+ L +R V++ D G Y CQ + + + + +
Sbjct: 718 GNRN---LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEK 760
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 91.5 bits (227), Expect = 5e-21
Identities = 43/311 (13%), Positives = 83/311 (26%), Gaps = 75/311 (24%)
Query: 21 MPRFAEPVANVTATVGKEALMACVVEN-LREYKVAWVKMITQTILSIHHKVVTQNKRVSI 79
+ T G+ + CV+ N + + W K + + V ++R++
Sbjct: 100 LIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKK--RLSGADPNADVTDFDRRITA 157
Query: 80 TFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMT-SQKGYLQVVV----------PPRIL 127
+ +F + +D Y+C N ++ P
Sbjct: 158 GPD-GNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQ 216
Query: 128 LDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDG----------------------- 164
S D++ + G + C P Y + +
Sbjct: 217 --YVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLF 274
Query: 165 -------------KAINYNGE----------LVPPMLTI-PNQLEGAFVSQTVELHCHTE 200
+ N G+ + P P ++ Q V + C
Sbjct: 275 KTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVT 334
Query: 201 AFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG 260
PA W+ ++G + + L I+ + + G Y C A N G
Sbjct: 335 GLPAPNVVWS--HNAKPLSGGRA---TVTDS-----GLVIKGVKNGDKGYYGCRATNEHG 384
Query: 261 ETDGFIKVYVN 271
+ V VN
Sbjct: 385 DKYFETLVQVN 395
Score = 76.9 bits (189), Expect = 5e-16
Identities = 49/318 (15%), Positives = 87/318 (27%), Gaps = 45/318 (14%)
Query: 22 PRFAEPVANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
P + A V ++ C++E N + K +W K K + +
Sbjct: 7 PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKD---------GKSYNWQEHNAAL 57
Query: 81 FNDHRSWFLHLRDVQETDRGWYMCQ-INTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVR 138
D S L Q +D G Y C +S+ + + +
Sbjct: 58 RKDEGS--LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIAS--PAKTHEKTPI 113
Query: 139 EGTEVTLECSAV-GYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHC 197
EG L+C YP+P + W++ + N ++ I +G V
Sbjct: 114 EGRPFQLDCVLPNAYPKPLITWKK-RLSGADPNADVTDFDRRITAGPDGNLYFTIVTKED 172
Query: 198 HTEAFPASLNYW---TNEKGDMIITGDDYEDSRLINGYSCHMTLKI-------RSILSHQ 247
++ + Y N D + +YE + S + + +
Sbjct: 173 VSDIY----KYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGD 228
Query: 248 FGSYRCVAV-------------NALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCI 294
C+ + N G + G Y C
Sbjct: 229 VTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCE 288
Query: 295 ASNGVVPSVSHRIMVTVH 312
NGV H + +TV
Sbjct: 289 VDNGVGKPQKHSLKLTVV 306
Score = 62.6 bits (152), Expect = 3e-11
Identities = 32/198 (16%), Positives = 49/198 (24%), Gaps = 61/198 (30%)
Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPY-VAWRREDGK----------- 165
L V P + +V+ RE LEC G + +W++ DGK
Sbjct: 1 LPVDKYPVLK--DQPAEVLFRENNPTVLECIIEGNDQGVKYSWKK-DGKSYNWQEHNAAL 57
Query: 166 -----------------------AINYNGEL--------VPPMLTIPNQLEGAFVS--QT 192
A G ++ P + +
Sbjct: 58 RKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRP 117
Query: 193 VELHCH-TEAFPASLNYWTNEKGDMIITGDDYEDSR----LINGYSCHMTLKIRSIL--- 244
+L C A+P L W D + R +G L +
Sbjct: 118 FQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDG-----NLYFTIVTKED 172
Query: 245 SHQFGSYRCVAVNALGET 262
Y C A NA +
Sbjct: 173 VSDIYKYVCTAKNAAVDE 190
Score = 29.1 bits (65), Expect = 1.7
Identities = 18/140 (12%), Positives = 27/140 (19%), Gaps = 49/140 (35%)
Query: 174 VPPMLTI-PNQLEGAFVSQTVELHCHTEAFPASLNY-WTNEKGDMIITGDDYEDSRLING 231
P+L P ++ + L C E + Y W + G + R G
Sbjct: 5 KYPVLKDQPAEVL-FRENNPTVLECIIEGNDQGVKYSWKKD-GKSYNWQEHNAALRKDEG 62
Query: 232 YSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAY 291
+L G Y
Sbjct: 63 -----SLVFLRP----------------------------------------QASDEGHY 77
Query: 292 LCIASNGVVPSVSHRIMVTV 311
C A + S I
Sbjct: 78 QCFAETPAGVASSRVISFRK 97
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 88.0 bits (218), Expect = 5e-21
Identities = 44/262 (16%), Positives = 75/262 (28%), Gaps = 84/262 (32%)
Query: 22 PRFAEPVANVTATVGKEALMACVVE--NLREYKVAWVKMITQTILSIHHKVVTQNKRVSI 79
P E V GK ++ C + W+ + +T +KR +
Sbjct: 9 PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLL-NEFPVF------ITMDKRRFV 61
Query: 80 TFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVV----------PPRILL 128
+ + L++ +V+ +D+G Y C + + S ++ P I+
Sbjct: 62 SQTNGN---LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIV- 117
Query: 129 DRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAF 188
DV G VTLEC A+G P P + WR+ + +
Sbjct: 118 -VQFKDVYALMGQNVTLECFALGNPVPDIRWRK-VLEPMPSTA----------------- 158
Query: 189 VSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQF 248
+ + I ED
Sbjct: 159 -------------------EISTSGAVLKIFNIQLEDE---------------------- 177
Query: 249 GSYRCVAVNALGETDGFIKVYV 270
G Y C A N G+ ++YV
Sbjct: 178 GIYECEAENIRGKDKHQARIYV 199
Score = 40.3 bits (94), Expect = 3e-04
Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 15/104 (14%)
Query: 18 KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRV 77
KP +V A +G+ + C + W K+ + +
Sbjct: 110 KPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKV---------LEPMPSTAE- 159
Query: 78 SITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQV 120
I+ + L + ++Q D G Y C+ N + + V
Sbjct: 160 -ISTSGAV---LKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199
Score = 38.7 bits (90), Expect = 8e-04
Identities = 23/158 (14%), Positives = 37/158 (23%), Gaps = 55/158 (34%)
Query: 116 GYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVP 175
G + P +V V+EG + L C + P
Sbjct: 1 GPGSGYLDPFP--PEERPEVRVKEGKGMVLLCDPPYHF---------------------P 37
Query: 176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCH 235
L+ W + + IT D NG
Sbjct: 38 DDLSY---------------------------RWLLNEFPVFITMDKRRFVSQTNG---- 66
Query: 236 MTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLV 273
L I ++ + G+Y C + F K +
Sbjct: 67 -NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIP 103
Score = 32.9 bits (75), Expect = 0.076
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 272 LVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
G + +I + G Y C A N H+ + V
Sbjct: 161 STSGAVLKIFNIQLEDEGIYECEAENIRG-KDKHQARIYVQ 200
Score = 26.8 bits (59), Expect = 9.3
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 267 KVYVNLVDGDIFQIRKMSRLHMGAYLCIASN--GVVPSVSHRIMVTV 311
+ +V+ +G+ I + G Y C S+ S I +
Sbjct: 58 RRFVSQTNGN-LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIP 103
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 87.7 bits (217), Expect = 7e-21
Identities = 38/261 (14%), Positives = 68/261 (26%), Gaps = 57/261 (21%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKM-ITQTILSIHHKVVTQNKRVSIT 80
++V + + C +V W + + T L ++ +T +T
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 81 FNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKG--YLQVVVPPRILLDRTSTDVVV 137
F+ + V D G Y C + + +L V+VPP S V
Sbjct: 62 FSSSG---ITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKP--TISVPSSV 116
Query: 138 REGTEVTLECSAV-GYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELH 196
G L CS G P +W + +G +
Sbjct: 117 TIGNRAVLTCSEHDGSPPSEYSWFK--------DGISMLT-------------------- 148
Query: 197 CHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV 256
+ I L + + G Y C A
Sbjct: 149 ------ADAKKTRAFMNSSFTIDPKS-------------GDLIFDPVTAFDSGEYYCQAQ 189
Query: 257 NALGETDGFIKVYVNLVDGDI 277
N G +++ V+ ++
Sbjct: 190 NGYGTAMRSEAAHMDAVELNV 210
Score = 38.0 bits (88), Expect = 0.002
Identities = 10/45 (22%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
Query: 269 YVNLVDGDIFQIRKMSRLHMGAYLCIASNGV-VPSVSHRIMVTVH 312
V I ++R G Y C+ S I +TV
Sbjct: 59 RVTFSSSGIT-FSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL 102
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 89.2 bits (221), Expect = 8e-21
Identities = 46/297 (15%), Positives = 73/297 (24%), Gaps = 70/297 (23%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P + G+ + CV V W I+ +
Sbjct: 5 PVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGST-------- 52
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREG 140
L R+ + G Y C S +L V P + +V V EG
Sbjct: 53 -------LTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWN-LLAQEVTVVEG 104
Query: 141 TEVTLECSAVGY-PEPYVAWRREDGK--------------------------------AI 167
E L C + V+ RE G+ +
Sbjct: 105 QEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTM 164
Query: 168 NYNGE--------------LVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEK 213
E PP + + + ++ C N +
Sbjct: 165 VNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILK-R 223
Query: 214 GDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
GD + D + N Y L + ++ G Y CVA N +G + V
Sbjct: 224 GDTKLEIPLNSDFQ-DNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279
Score = 50.3 bits (120), Expect = 3e-07
Identities = 19/106 (17%), Positives = 29/106 (27%), Gaps = 8/106 (7%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P+ + + G+ A + C N +K + + N +
Sbjct: 187 PQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKL------EIPLNSDFQDNY 240
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRI 126
L L V D G Y C N V + QVV
Sbjct: 241 YKKVR-ALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHHH 285
Score = 49.2 bits (117), Expect = 5e-07
Identities = 36/199 (18%), Positives = 49/199 (24%), Gaps = 54/199 (27%)
Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPN 182
P I ++VV G VTL C + G V W + E LT N
Sbjct: 4 APVIEPS--GPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGSTLTTRN 57
Query: 183 -----------------------------QLEGAFVS----------QTVELHCHTEAFP 203
++ Q L C
Sbjct: 58 ATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPA 117
Query: 204 ASLNY-WTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA-VNALGE 261
+ E G ++ Y +S IR +Y C VN
Sbjct: 118 LKDSVSLMREGGRQVLRKTVYF-------FSPWRGFIIRKAKVLDSNTYVCKTMVNGRES 170
Query: 262 TDGFIKVYVNLVDGDIFQI 280
T I + VN V + QI
Sbjct: 171 TSTGIWLKVNRVHPEPPQI 189
Score = 42.2 bits (99), Expect = 1e-04
Identities = 31/191 (16%), Positives = 45/191 (23%), Gaps = 67/191 (35%)
Query: 175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSC 234
P++ +TV L C + W + S
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNGSVE----WDGPISPYWTLDPESPGS-------- 51
Query: 235 HMTLKIRSILSHQFGSYRCVAVNALGE--------------------------------- 261
TL R+ G+YRC +
Sbjct: 52 --TLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVL 109
Query: 262 ----TDGFIKVYVNLV--DGDI--------------FQIRKMSRLHMGAYLCIASNGVVP 301
TD +K V+L+ G F IRK L Y+C
Sbjct: 110 PCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRE 169
Query: 302 SVSHRIMVTVH 312
S S I + V+
Sbjct: 170 STSTGIWLKVN 180
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 87.1 bits (216), Expect = 1e-20
Identities = 45/256 (17%), Positives = 81/256 (31%), Gaps = 75/256 (29%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVK---MITQTILSIHHKVVTQNKRVS 78
P F +P+ +V G A + +V+W + +I+ + V
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTS----------TLPGVQ 55
Query: 79 ITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVV---VPPRILLDRTSTD 134
I+F+D R+ L + V + + G Y + N + L V PP + +
Sbjct: 56 ISFSDGRA-KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFV--QRLQS 112
Query: 135 VVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVE 194
+ VR+G++V L+ G P P V + R +G +
Sbjct: 113 MTVRQGSQVRLQVRVTGIPTPVVKFYR--------DGAEIQS------------------ 146
Query: 195 LHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV 254
+ + GD Y +L I G+Y
Sbjct: 147 ----------------SLDFQISQEGDLY-------------SLLIAEAYPEDSGTYSVN 177
Query: 255 AVNALGETDGFIKVYV 270
A N++G ++ V
Sbjct: 178 ATNSVGRATSTAELLV 193
Score = 27.0 bits (60), Expect = 6.6
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 261 ETDGFIKVYVNLVDGDI-FQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
T V ++ DG I +++ + G Y A+NG + + V
Sbjct: 47 STSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNG-SGQATSTAELLVK 98
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 90.5 bits (224), Expect = 1e-20
Identities = 46/390 (11%), Positives = 86/390 (22%), Gaps = 112/390 (28%)
Query: 18 KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRV 77
+P A V V + +V+ WV H +
Sbjct: 45 RPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVF---------KHSSLNCQPHF 95
Query: 78 SITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVV 136
+ S + + + ET G Y+ I + + + + L R
Sbjct: 96 DLQNRGVVS--MVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRP--YFR 151
Query: 137 VREGTEVTLECSAVGYPEPYVAWRREDGK------------------------------A 166
E + L C + PEP V W D + A
Sbjct: 152 KMEN-QDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCA 210
Query: 167 INYNGE---------LVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNY-WTNEKGDM 216
N G L T QL V + + + C W +
Sbjct: 211 RNELGRECTRLFTIDLNQTPQTTLPQLF-LKVGEPLWIRCKAVHVNHGFGLTWE--LENK 267
Query: 217 IITGDDYEDSRLINGYSCHM---TLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV--- 270
+ +Y + + + + S+ + G Y C + ++ + +
Sbjct: 268 ALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS-ALVTIVEKGF 326
Query: 271 ----------------------------------------------NLVDGDIFQIRKMS 284
L +G
Sbjct: 327 INATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNH 386
Query: 285 RLHMGAYLCIASNGVVPSVSHRIMVTVHCK 314
+ G Y+ A N + + +
Sbjct: 387 KHQPGEYIFHAENDDA-QFTKMFTLNIRSG 415
Score = 59.7 bits (144), Expect = 3e-10
Identities = 21/211 (9%), Positives = 40/211 (18%), Gaps = 57/211 (27%)
Query: 93 DVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGY 152
D Y L+ + + V V +TL+
Sbjct: 21 DSSVGKSSSYPMVSE--SPEDLGCALRPQSSGTV---YEAAAVEVDVSASITLQVLVDAP 75
Query: 153 PEPYVAWRREDGK---------------------------------AINYNGE------- 172
W + +
Sbjct: 76 GNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTV 135
Query: 173 --LVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLIN 230
+ T+ +Q L C +E+ P + W + + + +
Sbjct: 136 SIRNTLLYTLRRPYFRKMENQDA-LVCISESVPEPIVEWVLCDSQ-GESCKEESPAVVKK 193
Query: 231 GYSCHMTLKIRSILSHQFGSYRCVAVNALGE 261
+ + RC A N LG
Sbjct: 194 E-----EKVLHELFG---TDIRCCARNELGR 216
Score = 39.7 bits (92), Expect = 8e-04
Identities = 8/109 (7%), Positives = 25/109 (22%), Gaps = 15/109 (13%)
Query: 19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
+ +E + + + + W K ++
Sbjct: 324 KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFS---------RKSFPCEQK-- 372
Query: 79 ITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRI 126
++ S + + G Y+ N ++ L + +
Sbjct: 373 -GLDNGYS--ISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKH 418
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 89.2 bits (221), Expect = 3e-20
Identities = 39/308 (12%), Positives = 74/308 (24%), Gaps = 81/308 (26%)
Query: 21 MPRFAEPVANVTATVGKEALMACVVENLR---EYKVAWVKMITQTILSIHHKVVTQNKRV 77
+ V G A++ C++ + V+W + + +
Sbjct: 103 AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPG----AEYDGKY 158
Query: 78 SITFNDHRSWFLHLRDVQETD-RGWYMCQ-INTV---PMTSQKGYLQVVVPP-----RIL 127
+ + LH+R+V D Y C+ + + S V+ P
Sbjct: 159 LVLPSGE----LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRT 214
Query: 128 LDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGK---------------------- 165
+ + ++L C A G+P P W +
Sbjct: 215 PALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLII 274
Query: 166 --------------AINYNGE---------LVPPMLTIPNQLEGAFVSQTVELHCHTEAF 202
N G P I + + C
Sbjct: 275 KDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGN 334
Query: 203 PASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET 262
P W + G I + L+I S+ G Y+C N
Sbjct: 335 PIKTVSWMKD-GKAIGHSES--------------VLRIESVKKEDKGMYQCFVRNDRESA 379
Query: 263 DGFIKVYV 270
+ ++ +
Sbjct: 380 EASAELKL 387
Score = 76.5 bits (188), Expect = 6e-16
Identities = 38/166 (22%), Positives = 57/166 (34%), Gaps = 18/166 (10%)
Query: 18 KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRV 77
P P + + V + C + W K I T + + K+V
Sbjct: 211 APRTPALVQK--PLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQV 268
Query: 78 SITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVV 136
S T L ++D D G Y+C + N+V S + L V P
Sbjct: 269 SGT--------LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAK--IDPPTQT 318
Query: 137 VREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPN 182
V G C G P V+W + DGKAI ++ +L I +
Sbjct: 319 VDFGRPAVFTCQYTGNPIKTVSWMK-DGKAIGHSES----VLRIES 359
Score = 70.7 bits (173), Expect = 6e-14
Identities = 48/311 (15%), Positives = 82/311 (26%), Gaps = 72/311 (23%)
Query: 22 PRFA-EPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
P F EP + + A + C ++ W++ T + + + +
Sbjct: 4 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRS-DGTAVGDVPGLRQISSDGKLV 62
Query: 81 FNDHRSWFLHLRDVQETDRGWYMCQ-INTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVR 138
F F QE Y C N + S+ +++ VV D V
Sbjct: 63 FPP----FRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADV--NKEHVI 116
Query: 139 EGTEVTLEC---SAVGYPEPYVAWRREDGK------------AINYNGEL---------- 173
G ++C S V V+W ++ + + +GEL
Sbjct: 117 RGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDG 176
Query: 174 ----------------------------VPPMLTIPNQLEGAFVSQTV------ELHCHT 199
P + P + L C
Sbjct: 177 YKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPA 236
Query: 200 EAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNAL 259
+ FPA W + R+ TL I+ + G Y CV N++
Sbjct: 237 QGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSG---TLIIKDAVVEDSGKYLCVVNNSV 293
Query: 260 GETDGFIKVYV 270
G + V
Sbjct: 294 GGESVETVLTV 304
Score = 67.3 bits (164), Expect = 9e-13
Identities = 34/196 (17%), Positives = 56/196 (28%), Gaps = 61/196 (31%)
Query: 122 VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINY---------NGE 172
P L + T+ + T +EC A G P P + W R DG A+ +G+
Sbjct: 2 KGPVFLKEPTNR-IDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK 60
Query: 173 LV----------------------------------------PPMLTIPNQLEGAFVSQT 192
LV E +
Sbjct: 61 LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNS 120
Query: 193 VELHCHTEAFPASLN---YWTNEKGDMIITGDDYEDSRLI--NGYSCHMTLKIRSI-LSH 246
+ C +F A W ++ + G +Y+ L+ +G L IR +
Sbjct: 121 AVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG-----ELHIREVGPED 175
Query: 247 QFGSYRCVAVNALGET 262
+ SY+C + L
Sbjct: 176 GYKSYQCRTKHRLTGE 191
Score = 27.6 bits (61), Expect = 5.5
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 259 LGETDGFIKVYVN--LVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTV 311
+G+ G ++ + LV +H Y C+A N +S + V
Sbjct: 46 VGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRA 100
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 85.8 bits (212), Expect = 4e-20
Identities = 40/258 (15%), Positives = 64/258 (24%), Gaps = 58/258 (22%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKM-ITQTILSIHHKVVTQNKRVSIT 80
V ++C +V W T L ++ +T + +T
Sbjct: 5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVT 64
Query: 81 FNDHRSWFLHLRDVQETDRGWYMCQI-NTVP--MTSQKGYLQVVVPPRILLDRTSTDVVV 137
F + + V D G Y C + K L V+VPP +
Sbjct: 65 FLPTG---ITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKP--TVNIPSSA 119
Query: 138 REGTEVTLECSAV-GYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELH 196
G L CS G P W + +G ++P
Sbjct: 120 TIGNRAVLTCSEQDGSPPSEYTWFK--------DGIVMPTNPKSTRAFS----------- 160
Query: 197 CHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV 256
S ++N + L + + G Y C A
Sbjct: 161 ---------------------------NSSYVLNPTT--GELVFDPLSASDTGEYSCEAR 191
Query: 257 NALGETDGFIKVYVNLVD 274
N G V + V+
Sbjct: 192 NGYGTPMTSNAVRMEAVE 209
Score = 39.6 bits (92), Expect = 5e-04
Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 273 VDGDIFQIRKMSRLHMGAYLCIASNGVVPSV-SHRIMVTVH 312
+ ++R G Y C+ S S ++ + V
Sbjct: 65 FLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVL 105
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 85.9 bits (212), Expect = 4e-20
Identities = 30/180 (16%), Positives = 59/180 (32%), Gaps = 25/180 (13%)
Query: 26 EPVANVTATVGKEALMACVV----ENLREYKVAWVKMITQTILSIHHKVVTQNK------ 75
P + G+ A + C E+ + W+ + + ++
Sbjct: 5 TPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNY 64
Query: 76 ------RVSITFND--HRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRI 126
RV T ND +++ ++Q +D G Y C++ + ++K L V+V P
Sbjct: 65 YPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSG 124
Query: 127 LLDRTSTDVVVREGTEVTLECSAV-GYPEPYVAWRREDGKAINYNGELVPPM---LTIPN 182
R D G + L+C G W++ L +++ N
Sbjct: 125 T--RCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKN 182
Score = 43.5 bits (102), Expect = 2e-05
Identities = 30/250 (12%), Positives = 61/250 (24%), Gaps = 96/250 (38%)
Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPY----VAWRREDGKAINYNGEL 173
L + P + +G L C PE + W
Sbjct: 1 LSITTPE--------QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDN------- 45
Query: 174 VPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYS 233
V Q + L+ + + NY+ + KG + T +D +
Sbjct: 46 -------------QIVDQVIILYSGDKIYD---NYYPDLKGRVHFTSNDVKSG------- 82
Query: 234 CHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKV------------------------- 268
++ + ++ G+Y+C A G + +
Sbjct: 83 -DASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKL 141
Query: 269 ---------------------------YVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVP 301
++ + + ++ S + G Y C N V
Sbjct: 142 KCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVG- 200
Query: 302 SVSHRIMVTV 311
S + + V
Sbjct: 201 SDQCMLRLDV 210
Score = 32.0 bits (72), Expect = 0.15
Identities = 14/104 (13%), Positives = 29/104 (27%), Gaps = 14/104 (13%)
Query: 22 PRFAEPVANVTATVGKEALMACVVEN-LREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
P + + +G + + C + + W K+ + +
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSP----- 176
Query: 81 FNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVP 123
+ +++ G Y C + N V L VV P
Sbjct: 177 -------VISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP 213
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 84.3 bits (208), Expect = 1e-19
Identities = 33/142 (23%), Positives = 50/142 (35%), Gaps = 7/142 (4%)
Query: 27 PVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND--H 84
P T VG + C + ++ ++ Q + + Q++R ++
Sbjct: 8 PKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKV---ENDTSLQSERATLLEEQLPL 64
Query: 85 RSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVT 144
H+ VQ D G Y C + K YL V V + T V EV
Sbjct: 65 GKALFHIPSVQVRDSGQYRCLVICGAAWDYK-YLTVKVKASYMRIDTRILEVP-GTGEVQ 122
Query: 145 LECSAVGYPEPYVAWRREDGKA 166
L C A GYP V+W+ A
Sbjct: 123 LTCQARGYPLAEVSWQNVSVPA 144
Score = 31.6 bits (71), Expect = 0.24
Identities = 24/181 (13%), Positives = 38/181 (20%), Gaps = 59/181 (32%)
Query: 119 QVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPML 178
V P + V G+ V+LEC + R
Sbjct: 4 TVTAPKEV--------YTVDVGSSVSLECDFDRRECTELEGIR----------------- 38
Query: 179 TIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYE--DSRLINGYSCHM 236
+ D + + + +L G
Sbjct: 39 ----------------------------ASLQKVENDTSLQSERATLLEEQLPLG---KA 67
Query: 237 TLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYL-CIA 295
I S+ G YRC+ + ++ V V I L C A
Sbjct: 68 LFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQA 127
Query: 296 S 296
Sbjct: 128 R 128
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 84.0 bits (208), Expect = 1e-19
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 16/157 (10%)
Query: 17 EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKR 76
+ P P P+ V A V + A C VE+ + +++W + + + R
Sbjct: 3 KLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRN--------KILIKLFDTR 54
Query: 77 VSITFNDHRSWFLHLRDVQETDRGWYMCQ-INTV-PMTSQKGYLQVVVPPRILLDRTSTD 134
SI N L + V+++D G Y C N V G LQV + P+I R +
Sbjct: 55 YSIRENGQ---LLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKIT--RPPIN 109
Query: 135 VVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNG 171
V + EG + L C+ +G P+P V+W + A+ N
Sbjct: 110 VKIIEGLKAVLPCTTMGNPKPSVSWIK-GDSALRENS 145
Score = 56.7 bits (137), Expect = 8e-10
Identities = 35/238 (14%), Positives = 57/238 (23%), Gaps = 95/238 (39%)
Query: 119 QVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI----------- 167
++ P I V T C+ YP+P ++W R + I
Sbjct: 3 KLPKAPVIT--TPLETVDALVEEVATFMCAVESYPQPEISWTR-NKILIKLFDTRYSIRE 59
Query: 168 -----------------------NYNGE----------LVPPMLTIPNQLEGAFVSQTVE 194
N G + P +T P
Sbjct: 60 NGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAV 119
Query: 195 LHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV 254
L C T P W KGD + + ++L
Sbjct: 120 LPCTTMGNPKPSVSWI--KGDSALRENSR-----------------IAVLE--------- 151
Query: 255 AVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
G +L +I + + G Y C+A N + + S + + V
Sbjct: 152 --------SG------SL------RIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189
Score = 44.7 bits (106), Expect = 7e-06
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 15/104 (14%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P+ P NV G +A++ C + V+W+K + +N R+++
Sbjct: 101 PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIK---------GDSALRENSRIAVLE 151
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQ-INTV-PMTSQKGYLQVVVP 123
+ L + +VQ+ D G Y C N++ S+ L+V V
Sbjct: 152 SGS----LRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVF 191
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 83.1 bits (205), Expect = 7e-19
Identities = 42/257 (16%), Positives = 75/257 (29%), Gaps = 60/257 (23%)
Query: 22 PRFAEPV----ANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRV 77
P + P + C ++W+K + + R+
Sbjct: 12 PYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK---------NGREFRGEHRI 62
Query: 78 SITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVV---PPRILLDRTST 133
H+ W L + V +DRG Y C + N Q L V+ IL
Sbjct: 63 GGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPA 122
Query: 134 DVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTV 193
+ G++V C +P++ W + NG V P T + +++S++V
Sbjct: 123 NQTAVLGSDVEFHCKVYSDAQPHIQWLKHV----EVNGSKVGPDGTPYVTVLKSWISESV 178
Query: 194 ELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC 253
E L++ ++ G Y C
Sbjct: 179 EADV---------------------------------------RLRLANVSERDGGEYLC 199
Query: 254 VAVNALGETDGFIKVYV 270
A N +G + + V
Sbjct: 200 RATNFIGVAEKAFWLSV 216
Score = 63.8 bits (155), Expect = 5e-12
Identities = 24/129 (18%), Positives = 47/129 (36%), Gaps = 9/129 (6%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVK--MITQTILSIHHKVVTQNKRVSI 79
A AN TA +G + C V + + + W+K + + + + I
Sbjct: 115 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWI 174
Query: 80 TFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRILLDRTSTDVVVR 138
+ + L L +V E D G Y+C+ N + + + +L V P + +V
Sbjct: 175 SESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAA------EEELVE 228
Query: 139 EGTEVTLEC 147
++
Sbjct: 229 ADEAGSVHH 237
Score = 47.2 bits (112), Expect = 2e-06
Identities = 21/152 (13%), Positives = 35/152 (23%), Gaps = 56/152 (36%)
Query: 121 VVPPRIL--LDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPML 178
P + V V C A G P P ++W + NG
Sbjct: 9 TGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK--------NGREFRG-- 58
Query: 179 TIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTL 238
+ G + + + +L
Sbjct: 59 -------------------------------EHRIGGIKLRHQQW-------------SL 74
Query: 239 KIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
+ S++ G+Y CV N G + V
Sbjct: 75 VMESVVPSDRGNYTCVVENKFGSIRQTYTLDV 106
Score = 28.4 bits (63), Expect = 3.0
Identities = 7/51 (13%), Positives = 13/51 (25%), Gaps = 1/51 (1%)
Query: 261 ETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTV 311
+ I + + G Y C+ N S+ + V
Sbjct: 57 RGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENK-FGSIRQTYTLDV 106
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 82.8 bits (204), Expect = 7e-19
Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 17/155 (10%)
Query: 27 PVANVTATVGKEALMACVVE---NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND 83
P + A VG++A + C + + ++ WV + +++++ R S +
Sbjct: 10 PSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRG 69
Query: 84 HRSWF----------LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTST 133
S L + +V +D G Y+C V + L
Sbjct: 70 RTSILRDGITAGKAALRIHNVTASDSGKYLCYFQD---GDFYEKALVELKVAALGSDLHV 126
Query: 134 DVVVREGTEVTLECSAVG-YPEPYVAWRREDGKAI 167
DV + + LEC + G YP+P + W G+ I
Sbjct: 127 DVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENI 161
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 82.7 bits (204), Expect = 1e-18
Identities = 36/214 (16%), Positives = 56/214 (26%), Gaps = 54/214 (25%)
Query: 89 LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECS 148
+ D G Y CQ S L++ +L + V EG + L C
Sbjct: 50 YRITSASVNDSGEYRCQRGLSG-RSDPIQLEIHRGWLLL---QVSSRVFTEGEPLALRCH 105
Query: 149 AV-GYPEPYVAWRREDGKAINY---NGEL------------------------------- 173
A V + R +GKA + N L
Sbjct: 106 AWKDKLVYNVLYYR-NGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVT 164
Query: 174 -----VPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRL 228
P+L V L C T+ ++ + + Y S+
Sbjct: 165 VKELFPAPVLNASVTSP-LLEGNLVTLSCETKLLL--------QRPGLQLYFSFYMGSKT 215
Query: 229 INGYSCHMTLKIRSILSHQFGSYRCVAVNALGET 262
+ G + +I + G Y C A G
Sbjct: 216 LRGRNTSSEYQILTARREDSGLYWCEAATEDGNV 249
Score = 58.8 bits (142), Expect = 3e-10
Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 1/78 (1%)
Query: 83 DHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGT 141
H + L + + G Y C + TS + V + S + EG
Sbjct: 127 FHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGN 186
Query: 142 EVTLECSAVGYPEPYVAW 159
VTL C +
Sbjct: 187 LVTLSCETKLLLQRPGLQ 204
Score = 55.7 bits (134), Expect = 3e-09
Identities = 39/266 (14%), Positives = 61/266 (22%), Gaps = 101/266 (37%)
Query: 134 DVVVREGTEVTLECSAVGYPEPY-VAWRREDGKAINYNG--------------------- 171
V V + VTL C + P W +G A +
Sbjct: 10 WVSVFQEETVTLHCEVLHLPGSSSTQWFL-NGTATQTSTPSYRITSASVNDSGEYRCQRG 68
Query: 172 ----------ELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNY-WTNEKGDMIITG 220
E+ L + + + L CH N +
Sbjct: 69 LSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLY----------- 117
Query: 221 DDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN--------- 271
Y + + + + L I G+Y C + T I V V
Sbjct: 118 --YRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLN 175
Query: 272 ------LVDGD-------------------------------------IFQIRKMSRLHM 288
L++G+ +QI R
Sbjct: 176 ASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDS 235
Query: 289 GAYLCIASN--GVVPSVSHRIMVTVH 312
G Y C A+ G V S + + V
Sbjct: 236 GLYWCEAATEDGNVLKRSPELELQVL 261
Score = 26.8 bits (59), Expect = 8.5
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 84 HRSWFLHLRDVQETDRGWYMCQ----INTVPMTSQKGYLQV 120
+ S + + D G Y C+ V S + LQV
Sbjct: 220 NTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQV 260
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 80.4 bits (198), Expect = 3e-18
Identities = 26/149 (17%), Positives = 55/149 (36%), Gaps = 13/149 (8%)
Query: 28 VANVTATVGKEALMACV----VENLREYKVAWVKMITQTILSIHHKVVTQNK---RVSIT 80
V +VT V + A ++C VE L + ++ W K + + + + R
Sbjct: 1 VIHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD 60
Query: 81 FNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV---PPRILLDRTSTDVVV 137
+ + + + ++ +D G Y C + + K V + +D +
Sbjct: 61 ITN--NLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEI 118
Query: 138 REGTEVTLECSAVG-YPEPYVAWRREDGK 165
+ CS G +PEP+++W +
Sbjct: 119 PTSNIRRIICSTSGGFPEPHLSWLENGEE 147
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 79.5 bits (196), Expect = 4e-18
Identities = 26/153 (16%), Positives = 52/153 (33%), Gaps = 12/153 (7%)
Query: 26 EPVANVTATVGKEALMACVVENLREYK-VAWVKMITQTILSIHHK---VVTQNKRVSITF 81
+ V NV A G + + L Y+ + W+ Q IL V ++
Sbjct: 4 QSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVD 63
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGT 141
D + L + +V + DRG Y ++ K ++V S ++ E +
Sbjct: 64 LDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMV-------SKPMIYWECS 116
Query: 142 EVTLECSAVGYPEPYVAWRREDGKAINYNGELV 174
TL C + + + + + + +
Sbjct: 117 NATLTCEVLEGTDVELKLYQ-GKEHLRSLRQKT 148
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 80.3 bits (198), Expect = 4e-18
Identities = 31/190 (16%), Positives = 56/190 (29%), Gaps = 38/190 (20%)
Query: 8 GCTYFKTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIH 67
+ + P + + G+ + C + W KM
Sbjct: 5 HHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKM--------- 55
Query: 68 HKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI-NTV-PMTSQKGYLQVVVPPR 125
NK + + + L V D G+Y+C++ N SQ L V P
Sbjct: 56 ------NKEIP----NGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPE 105
Query: 126 ILLDRTS-------------TDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGE 172
T + G+ + L+C AVG P P+ W + + + +
Sbjct: 106 SFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFK-NELPLTHET- 163
Query: 173 LVPPMLTIPN 182
+ +P
Sbjct: 164 --KKLYMVPY 171
Score = 62.2 bits (151), Expect = 1e-11
Identities = 24/196 (12%), Positives = 41/196 (20%), Gaps = 64/196 (32%)
Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDG------------- 164
+VP + V G V L C A G+P W + +
Sbjct: 11 SSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFN 70
Query: 165 ------------KAINYNGE-------------------------LVPPMLTIPNQLEGA 187
+ N + + +
Sbjct: 71 AVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKL 130
Query: 188 FVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQ 247
T+ L C P W K ++ +T + + +
Sbjct: 131 MPGSTLVLQCVAVGSPIPHYQWF--KNELPLTHET------------KKLYMVPYVDLEH 176
Query: 248 FGSYRCVAVNALGETD 263
G+Y C N D
Sbjct: 177 QGTYWCHVYNDRDSQD 192
Score = 37.9 bits (88), Expect = 0.002
Identities = 14/119 (11%), Positives = 29/119 (24%), Gaps = 20/119 (16%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
+ + G ++ CV W K N+ +T
Sbjct: 119 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFK----------------NEL-PLTH 161
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVRE 139
+ + V +G Y C + N K ++ L + + +
Sbjct: 162 ETKKL--YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQTTDQ 218
Score = 31.4 bits (71), Expect = 0.25
Identities = 6/43 (13%), Positives = 12/43 (27%)
Query: 270 VNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
+ + + G Y+C +N S + V
Sbjct: 59 IPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVC 101
Score = 27.9 bits (62), Expect = 3.8
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 274 DGDIFQIRKMSRLHMGAYLCIASN--GVVPSVSHRIMVTV 311
++ + + H G Y C N S I++
Sbjct: 163 TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 202
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 81.1 bits (199), Expect = 6e-18
Identities = 51/268 (19%), Positives = 82/268 (30%), Gaps = 55/268 (20%)
Query: 21 MPRFAEPVANVTATVGKEALMACVV---ENLREYKVAWVKMITQTILSIHHKVVTQNKRV 77
+P + VG+ LM CVV E +V W+ + S + N V
Sbjct: 5 LPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSV 64
Query: 78 S----------ITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRI 126
+ H L L+DVQ+ D G Y C+I K +++ V P
Sbjct: 65 PTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEE 124
Query: 127 LLDRTSTDVVVREGTEVTLECSAVGYPEP---YVAWRREDGKAINYNGELVPPMLTIPNQ 183
D+ VR G + CS E V W G
Sbjct: 125 -----PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHT---------------- 163
Query: 184 LEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSI 243
+ L + + + +TGD + ++K++++
Sbjct: 164 ------EEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDG---------SIKLQTV 208
Query: 244 -LSHQFGSYRCVAVNALGETDGFIKVYV 270
S Q G Y C E+ I ++V
Sbjct: 209 KESDQ-GIYTCSIYVGKLESRKTIVLHV 235
Score = 45.6 bits (107), Expect = 8e-06
Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 20/137 (14%)
Query: 30 NVTATVGKEALMACVV---ENLREYKVAWVK-----MITQTILSIHHKVVTQNKRVSITF 81
++ VG M C + E R KV W+ +T+LS + + + F
Sbjct: 127 DLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRF 186
Query: 82 NDHRSWF---------LHLRDVQETDRGWYMCQINTVPMTSQK-GYLQVVVPPRILLDRT 131
+ + L+ V+E+D+G Y C I + S+K L VV
Sbjct: 187 RNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISP 246
Query: 132 STDVVVREGTEVTLECS 148
+ +G + L +
Sbjct: 247 TP--PTDKGQQGILNGN 261
Score = 38.7 bits (89), Expect = 0.001
Identities = 20/160 (12%), Positives = 42/160 (26%), Gaps = 44/160 (27%)
Query: 119 QVVVPPRILLDRTSTDVVVREGTEVTLEC---SAVGYPEPYVAWRREDGKAINYNGELVP 175
+ P + + +S + V G V + C V W K
Sbjct: 1 RSQGLPGLTV--SSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDK---------- 48
Query: 176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCH 235
+A L Y++N + +++ + G + H
Sbjct: 49 -----------------------DDASEYVLFYYSNLS----VPTGRFQNRSHLVGDTFH 81
Query: 236 --MTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLV 273
+L ++ + G Y C V + ++
Sbjct: 82 NDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL 121
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 79.9 bits (197), Expect = 7e-18
Identities = 38/249 (15%), Positives = 66/249 (26%), Gaps = 61/249 (24%)
Query: 22 PRFAEPV----ANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRV 77
P + C + W+K + K Q R+
Sbjct: 16 PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK---------NGKEFKQEHRI 66
Query: 78 SITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPR---ILLDRTST 133
++ W L + V +D+G Y C + N + +L VV R IL
Sbjct: 67 GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPA 126
Query: 134 DVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTV 193
+ G +V C +P++ W + K + G P L +
Sbjct: 127 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKV------------- 173
Query: 194 ELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC 253
K I + + L + ++ G Y C
Sbjct: 174 ------------------LKHSGINSSNAE-------------VLALFNVTEADAGEYIC 202
Query: 254 VAVNALGET 262
N +G+
Sbjct: 203 KVSNYIGQA 211
Score = 56.1 bits (135), Expect = 2e-09
Identities = 22/111 (19%), Positives = 45/111 (40%), Gaps = 10/111 (9%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSI-----HHKVVTQNKR 76
A AN + VG + C V + + + W+K + + + V ++
Sbjct: 119 ILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSG 178
Query: 77 VSITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRI 126
++ + + L L +V E D G Y+C+ N + +Q +L V+ +
Sbjct: 179 INSSNAEV----LALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQA 225
Score = 49.5 bits (118), Expect = 3e-07
Identities = 21/155 (13%), Positives = 34/155 (21%), Gaps = 56/155 (36%)
Query: 118 LQVVVPPRIL--LDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVP 175
P V V C A G P P + W + NG+
Sbjct: 10 SNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK--------NGKEFK 61
Query: 176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCH 235
+ G + +
Sbjct: 62 Q---------------------------------EHRIGGYKVRNQHW------------ 76
Query: 236 MTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
+L + S++ G+Y CV N G + + V
Sbjct: 77 -SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 110
Score = 30.6 bits (69), Expect = 0.50
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 261 ETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTV 311
+ + I Y + + G Y C+ N S++H + V
Sbjct: 61 KQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN-EYGSINHTYHLDV 110
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 79.1 bits (195), Expect = 8e-18
Identities = 38/255 (14%), Positives = 65/255 (25%), Gaps = 72/255 (28%)
Query: 21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
+ + ++ V +VG+ C E + + + +RV +
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNP---------QGEKIISTQRVVVQ 52
Query: 81 FNDHRSWFLHLRDVQETDRGWYMCQ-INTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVR 138
RS L + + D G Y CQ + L++ + +
Sbjct: 53 KEGVRS-RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFR--EVVSPQEFK 109
Query: 139 EGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCH 198
+G + + C P P V+W
Sbjct: 110 QGEDAEVVCRVSSSPAPAVSWLYH------------------------------------ 133
Query: 199 TEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNA 258
+ + T D + L N L+I +I G YRC
Sbjct: 134 ---------------NEEVTTISDNRFAMLANN-----NLQILNINKSDEGIYRCEGRVE 173
Query: 259 LGETDGF--IKVYVN 271
F I V VN
Sbjct: 174 ARGEIDFRDIIVIVN 188
Score = 29.4 bits (66), Expect = 0.99
Identities = 5/39 (12%), Positives = 14/39 (35%)
Query: 274 DGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
I + G Y C A++ + +++ ++
Sbjct: 56 VRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY 94
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 80.3 bits (197), Expect = 8e-18
Identities = 38/277 (13%), Positives = 69/277 (24%), Gaps = 70/277 (25%)
Query: 27 PVANVTATVGKEALMACVVENLREY---KVAWVK----------------MITQTILSIH 67
V G + C + + ++W+K + + +
Sbjct: 8 THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVE 67
Query: 68 HKVVTQNK-----RVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKG------ 116
++ R S+ + L L V D G Y CQ+ + ++ G
Sbjct: 68 SDSYKESFGDFLGRASVANLAAPT--LRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSV 125
Query: 117 --YLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELV 174
+ P + T+ V V EG ++T+ C V W NY
Sbjct: 126 VLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYE---- 181
Query: 175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSC 234
+ Y + + +S
Sbjct: 182 ------------------------------TGTYQPLANKNQFGITWFSSEIAGRASFSG 211
Query: 235 HMTLKIRSI-LSHQFGSYRCVAVNALGETDGFIKVYV 270
L IR+ ++ G C GE D +
Sbjct: 212 ARNLVIRAAKITDA-GRVWCELATGQGELDADRSSTI 247
Score = 49.9 bits (118), Expect = 3e-07
Identities = 17/129 (13%), Positives = 29/129 (22%), Gaps = 20/129 (15%)
Query: 10 TYFKTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVK------------ 57
K P V G + M C + V W
Sbjct: 125 VVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGT 184
Query: 58 ---MITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTS 113
+ + I R S + + L +R + TD G C++
Sbjct: 185 YQPLANKNQFGITWFSSEIAGRASFSGARN----LVIRAAKITDAGRVWCELATGQGELD 240
Query: 114 QKGYLQVVV 122
++
Sbjct: 241 ADRSSTILK 249
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 79.1 bits (195), Expect = 1e-17
Identities = 45/248 (18%), Positives = 70/248 (28%), Gaps = 68/248 (27%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
PRF + T G A C K+ W K K V+ + I F
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKK---------GKKVSNQRFEVIEF 57
Query: 82 NDHRSWFLHLRDVQ-ETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRILLDRTS-----TD 134
+D L ++ ++ D Y C N V S L V+ +I +
Sbjct: 58 DDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQL 117
Query: 135 VVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVE 194
VV T+ C+A G P+P + W + + V
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFK--------DFLPVDT------------------ 151
Query: 195 LHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV 254
+ ++ +L + L+I G Y CV
Sbjct: 152 ------------------------SNNNGRIKQLRSESIG--ALQIEQSEESDQGKYECV 185
Query: 255 AVNALGET 262
A N+ G
Sbjct: 186 ATNSAGTR 193
Score = 44.8 bits (106), Expect = 9e-06
Identities = 17/113 (15%), Positives = 31/113 (27%), Gaps = 15/113 (13%)
Query: 17 EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVK---MITQTILSIHHKVVTQ 73
P + A M C + ++ W K + + + K +
Sbjct: 104 IPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRS 163
Query: 74 NKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI-NTV-PMTSQKGYLQVVVPP 124
+ L + +E+D+G Y C N+ S L V
Sbjct: 164 ESIGA----------LQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTK 206
Score = 29.4 bits (66), Expect = 1.3
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 261 ETDGFIKVYVNLVDGDIFQIRKMSRLH-MGAYLCIASNGVVPSVSHRIMVTVHCK 314
F + + G + +I+ + Y C+ASN V +S +TV +
Sbjct: 48 SNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNN-VGEISVSTRLTVLRE 101
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 80.0 bits (197), Expect = 3e-17
Identities = 42/324 (12%), Positives = 76/324 (23%), Gaps = 98/324 (30%)
Query: 22 PRFAEPVANVTATVGKEALMACVVEN-LREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
+ G ++C WVK + ++RV +
Sbjct: 9 GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKD---------GTGLVPSERVLV- 58
Query: 81 FNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDR---------- 130
L + + D G Y C+ ++V P D
Sbjct: 59 ----GPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTG 114
Query: 131 --------------TSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI--------- 167
+ V V C A G P P ++W + +G+
Sbjct: 115 VDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK-NGREFRGEHRIGGI 173
Query: 168 ---------------------------NYNGEL--------------VPPMLTIPNQLEG 186
N G + P + +
Sbjct: 174 KLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQT 233
Query: 187 AFVSQTVELHCHTEAFPASLNYWT--NEKGDMIITGDDYEDSRLINGYSCHM------TL 238
A + VE HC + W E + D ++ + L
Sbjct: 234 AVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVL 293
Query: 239 KIRSILSHQFGSYRCVAVNALGET 262
+ ++ G Y C+A N++G +
Sbjct: 294 SLHNVTFEDAGEYTCLAGNSIGFS 317
Score = 55.0 bits (132), Expect = 8e-09
Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 4/112 (3%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT---QTILSIHHKVVTQNKRVS 78
A AN TA +G + C V + + + W+K + + VT K
Sbjct: 223 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAG 282
Query: 79 ITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRILLD 129
D L L +V D G Y C N++ + +L V+ L++
Sbjct: 283 ANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEELVE 334
Score = 41.5 bits (97), Expect = 2e-04
Identities = 17/145 (11%), Positives = 29/145 (20%), Gaps = 61/145 (42%)
Query: 119 QVVVPPRILLDRTSTDVVVREGTEVTLECSAV-GYPEPYVAWRREDGKAINYNGELVPPM 177
+ P + +V G V L C G P W + +G + P
Sbjct: 3 RAAEVPGPEPGQQE-QLVFGSGDAVELSCPPPGGGPMGPTVWVK--------DGTGLVP- 52
Query: 178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMT 237
R++ G
Sbjct: 53 -----------------------------------------------SERVLVGPQ---R 62
Query: 238 LKIRSILSHQFGSYRCVAVNALGET 262
L++ + G+Y C
Sbjct: 63 LQVLNASHEDSGAYSCRQRLTQRVL 87
Score = 28.4 bits (63), Expect = 3.3
Identities = 10/40 (25%), Positives = 12/40 (30%)
Query: 272 LVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTV 311
LV Q+ S GAY C + VT
Sbjct: 57 LVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTD 96
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 77.8 bits (191), Expect = 3e-17
Identities = 23/156 (14%), Positives = 47/156 (30%), Gaps = 18/156 (11%)
Query: 29 ANVTATVGKEALMACVVE-----NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND 83
V +G + C ++ ++ W + +++ H+ + S
Sbjct: 7 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEF 66
Query: 84 HRSWF--------LHLRDVQETDRGWYMCQINTVPMTSQKGY--LQVVVPPRILLDRTST 133
+ L + ++ D G Y C T P S+ L+V+ P+
Sbjct: 67 VAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTA--EVQ 124
Query: 134 DVVVREGTEVTLECSAVG-YPEPYVAWRREDGKAIN 168
V + C + G P + W + G
Sbjct: 125 KVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQ 160
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 75.7 bits (186), Expect = 2e-16
Identities = 48/260 (18%), Positives = 83/260 (31%), Gaps = 71/260 (27%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVK---MITQTILSIHHKVVTQNKRVS 78
PR E ++ + A + C VE E + W K ++ H
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFK------ 63
Query: 79 ITFNDHRSWFLHLRDVQETDRGWYMCQ-INTV-PMTSQKGYLQV-VVPPRILLDRTSTDV 135
+ ++ ++ +E D G Y C N V S+ LQ+ V+ D
Sbjct: 64 ---DGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFR--VEPKDT 118
Query: 136 VVREGTEVTLECSAV-GYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVE 194
V +G LEC G PEP + W + +G + + +
Sbjct: 119 RVAKGETALLECGPPKGIPEPTLIWIK--------DGVPLDDLKAMS------------- 157
Query: 195 LHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV 254
F AS + G+++I+ + D G+Y+C+
Sbjct: 158 -------FGASSRVRIVDGGNLLISNVEPIDE----------------------GNYKCI 188
Query: 255 AVNALGE---TDGFIKVYVN 271
A N +G + + V V
Sbjct: 189 AQNLVGTRESSYAKLIVQVK 208
Score = 50.2 bits (120), Expect = 2e-07
Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 8/108 (7%)
Query: 22 PRFAEPVANVTATVGKEALMACV-VENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
F + G+ AL+ C + + E + W+K + + + RV I
Sbjct: 109 DDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKD-GVPLDDLKAMSFGASSRVRIV 167
Query: 81 FNDHRSWFLHLRDVQETDRGWYMCQI-NTV-PMTSQKGYLQVVVPPRI 126
+ L + +V+ D G Y C N V S L V V
Sbjct: 168 DGGN----LLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAA 211
Score = 29.1 bits (65), Expect = 1.6
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 261 ETDGFIKVYVNLVDGDIF---QIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTV 311
T+ V DG +F ++ G Y C+A N V +VS + +
Sbjct: 51 STNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 74.8 bits (184), Expect = 4e-16
Identities = 47/250 (18%), Positives = 82/250 (32%), Gaps = 75/250 (30%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVK----MITQTILSIHHKVVTQNKRV 77
PR E +++ + G+ A + C E + W K + T H+++ + +
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 78 SITFNDHRSWFLHLRDVQETDRGWYMCQ-INTV-PMTSQKGYLQV-VVPPRILLDRTSTD 134
H D G Y+C N + S L+V ++ + +D
Sbjct: 70 FFLRIVHGR-------KSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFR--QNPSD 120
Query: 135 VVVREGTEVTLECSAV-GYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTV 193
V+V G +EC G+PEP ++W++ DG ++ E + TI
Sbjct: 121 VMVAVGEPAVMECQPPRGHPEPTISWKK-DGSPLDDKDERI----TIRG----------- 164
Query: 194 ELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC 253
G ++IT D+ G Y C
Sbjct: 165 --------------------GKLMITYTRKSDA----------------------GKYVC 182
Query: 254 VAVNALGETD 263
V N +GE +
Sbjct: 183 VGTNMVGERE 192
Score = 51.0 bits (122), Expect = 8e-08
Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 16/109 (14%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLR-EYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
F + ++V VG+ A+M C E ++W K +
Sbjct: 112 DDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKK---------DGSPLDDKDERITI 162
Query: 81 FNDHRSWFLHLRDVQETDRGWYMCQI-NTV-PMTSQKGYLQVVVPPRIL 127
L + +++D G Y+C N V S+ L V+ P +
Sbjct: 163 RGGK----LMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFV 207
Score = 29.8 bits (67), Expect = 0.81
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 278 FQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
+ SR G Y+C+A N + +VSH + V
Sbjct: 74 IVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA 108
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 74.1 bits (181), Expect = 1e-15
Identities = 31/181 (17%), Positives = 57/181 (31%), Gaps = 17/181 (9%)
Query: 29 ANVTATVGKEALMACVVENLRE-YKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSW 87
V GK ++ C + Y + W Q + +T +D R
Sbjct: 8 PLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGR 67
Query: 88 F----------LHLRDVQETDRGWYMCQINTVPMTSQKGY--LQVVVPPR--ILLDRTST 133
L L + Q D Y+C + + + L V P + T
Sbjct: 68 SPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGT 127
Query: 134 DVVVREGTEVTLECSAV-GYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQT 192
V+ + + C++ G P P + W R +G+ + E+ P + A +
Sbjct: 128 LSVMEDSAQEIATCNSRNGNPAPKITWYR-NGQRLEVPVEMNPEGYMTSRTVREASGLLS 186
Query: 193 V 193
+
Sbjct: 187 L 187
Score = 32.9 bits (74), Expect = 0.087
Identities = 23/155 (14%), Positives = 38/155 (24%), Gaps = 46/155 (29%)
Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPY-VAWRREDGKAINYNGELVPP 176
+++ VPP V V G V L+C+ G + Y + W D
Sbjct: 2 VRLSVPP---------LVEVMRGKSVILDCTPTGTHDHYMLEWFLTDR------------ 40
Query: 177 MLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHM 236
L + ++ +T D
Sbjct: 41 -----------------------SGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQG 77
Query: 237 TLKIRSILSHQFGSYRCVA-VNALGETDGFIKVYV 270
L + Y CV A G + ++ V
Sbjct: 78 RLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNV 112
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 73.3 bits (180), Expect = 1e-15
Identities = 31/161 (19%), Positives = 47/161 (29%), Gaps = 21/161 (13%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P N VG A C + W K KV R ++
Sbjct: 7 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKN--------GKKVSGTQSRYTVLE 58
Query: 82 NDHRSWFLHLRDVQ-ETDRGWYMCQ-INTV-PMTSQKGYLQVVV-------PPRILLDRT 131
L + V+ D Y C N V S L + P I +
Sbjct: 59 QPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVIT--QG 116
Query: 132 STDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGE 172
V+ G V + C A+G P P + W + + ++ +
Sbjct: 117 PGTRVIEVGHTVLMTCKAIGNPTPNIYWIK-NQTKVDMSNP 156
Score = 52.5 bits (126), Expect = 2e-08
Identities = 25/143 (17%), Positives = 38/143 (26%), Gaps = 54/143 (37%)
Query: 120 VVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLT 179
PP I+ R + VR G + C+A G P P + WR+ +GK ++
Sbjct: 3 GAHPPEII--RKPQNQGVRVGGVASFYCAARGDPPPSIVWRK-NGKKVSGTQ---SRYTV 56
Query: 180 IPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLK 239
+ G +E D
Sbjct: 57 LEQ--PGGISILRIE------------------------PVRAGRDD------------- 77
Query: 240 IRSILSHQFGSYRCVAVNALGET 262
Y CVA N +G+
Sbjct: 78 ---------APYECVAENGVGDA 91
Score = 46.7 bits (111), Expect = 2e-06
Identities = 20/112 (17%), Positives = 33/112 (29%), Gaps = 15/112 (13%)
Query: 17 EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKR 76
P + VG LM C + W+K + V +
Sbjct: 106 TPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIK---------NQTKVDMSNP 156
Query: 77 VSITFNDHRSWFLHLRDVQETDRGWYMCQ-INTV-PMTSQKGYLQVVVPPRI 126
+ L + + +E D+G Y C N++ S+ L V V
Sbjct: 157 RYSLKDGF----LQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVG 204
Score = 28.6 bits (64), Expect = 2.0
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 259 LGETDGFIKVYVNLVDGDIFQIRKMSRLH-MGAYLCIASNGVVPSVSHRIMVTVH 312
+ T V I +I + Y C+A NGV +VS +T++
Sbjct: 47 VSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIY 101
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 74.2 bits (182), Expect = 3e-15
Identities = 39/280 (13%), Positives = 69/280 (24%), Gaps = 96/280 (34%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREY----------KVAWVKMITQTILSIHHKVV 71
V A + + E ++ Y KV W + +
Sbjct: 99 KELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSH---------NGSAI 149
Query: 72 TQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVV-------- 122
+ RV + W L + + D+G Y+ ++ + + L
Sbjct: 150 RYSDRVKTGVTGEQIW-LQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEF 208
Query: 123 ------------PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYN 170
R+L V ++EG + L C+ G P P V+W
Sbjct: 209 QRLKQAAIAEKNRARVLG-GLPDVVTIQEGKALNLTCNVWGDPPPEVSWL---------- 257
Query: 171 GELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLIN 230
K + + DD+ + +
Sbjct: 258 ------------------------------------------KNEKALASDDHCNLKFEA 275
Query: 231 GYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
G + I + + G Y V N G V V
Sbjct: 276 GRTA--YFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 313
Score = 66.1 bits (161), Expect = 1e-12
Identities = 30/276 (10%), Positives = 75/276 (27%), Gaps = 82/276 (29%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREY-KVAWVKMITQTILSIHHKVVTQNKRVSIT 80
P F E + + T L+ C V N+++ + W K + ++ +++
Sbjct: 8 PHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYK---------DEREISVDEKHDFK 57
Query: 81 FNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVRE 139
L + + + D G Y + + + L ++++ +
Sbjct: 58 DGICT---LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMME--VCKKIALS 112
Query: 140 GTEVTLECSA----------VGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFV 189
T++ ++ +A + V W +G AI Y+ +
Sbjct: 113 ATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSH-NGSAIRYSDRVK--------------- 156
Query: 190 SQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFG 249
+TG+ L+I + G
Sbjct: 157 --------------------------TGVTGEQI-------------WLQINEPTPNDKG 177
Query: 250 SYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSR 285
Y + + + D + +++ +
Sbjct: 178 KYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQ 213
Score = 51.1 bits (122), Expect = 2e-07
Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 10/108 (9%)
Query: 17 EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKR 76
EK VT GK + C V +V+W+K + K + +
Sbjct: 218 EKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK---------NEKALASDDH 268
Query: 77 VSITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVP 123
++ F R+ + + V D G Y + N + + V +P
Sbjct: 269 CNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 316
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 71.6 bits (175), Expect = 3e-15
Identities = 32/250 (12%), Positives = 60/250 (24%), Gaps = 74/250 (29%)
Query: 25 AEPVANVTATVGKEALMACVVENLR--EYKVAWVKMITQTILSIHHKVVTQNKRVSITFN 82
A V +G + L+ C + + W+K +
Sbjct: 2 AGTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLK---------------GGVVLKEDAL 46
Query: 83 DHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTE 142
+ + + G Y C +P +Q+ PPR+ + + EG
Sbjct: 47 PGQK--TEFKVDSDDQWGEYSCVF--LPEPMGTANIQLHGPPRVK--AVKSSEHINEGET 100
Query: 143 VTLECSAVGYPEP-YVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEA 201
L C + P AW +
Sbjct: 101 AMLVCKSESVPPVTDWAWYKITD------------------------------------- 123
Query: 202 FPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSI-LSHQFGSYRCVAVNALG 260
+ + E ++ L I ++ + G YRC ++ G
Sbjct: 124 ------------SEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKG 171
Query: 261 ETDGFIKVYV 270
I + V
Sbjct: 172 SDQAIITLRV 181
Score = 51.6 bits (123), Expect = 4e-08
Identities = 27/220 (12%), Positives = 48/220 (21%), Gaps = 79/220 (35%)
Query: 131 TSTDVVVREGTEVTLECSAVGYPEP--YVAWRREDGKAIN----YNGEL----------- 173
T V G+++ L CS W + G + +
Sbjct: 4 TVFTTVEDLGSKILLTCSLNDSATEVTGHRWLK-GGVVLKEDALPGQKTEFKVDSDDQWG 62
Query: 174 -------------------VPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNY-WTNEK 213
PP + E +T L C +E+ P ++ W
Sbjct: 63 EYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKIT 122
Query: 214 GDMIITGDDYEDSRL-INGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNL 272
+ +SR ++ L I ++
Sbjct: 123 DSEDKALMNGSESRFFVSSSQGRSELHIENLNMEA------------------------- 157
Query: 273 VDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
G Y C ++ S I + V
Sbjct: 158 --------------DPGQYRCNGTSS-KGSDQAIITLRVR 182
Score = 41.6 bits (97), Expect = 8e-05
Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 7/111 (6%)
Query: 13 KTKCEKPDMPRFAEPVANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHHKVV 71
+ PR ++ G+ A++ C E AW K+ ++ +
Sbjct: 75 TANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNG-- 132
Query: 72 TQNKRVSITFNDHRSWFLHLRDVQ-ETDRGWYMCQ-INTVPMTSQKGYLQV 120
R ++ + LH+ ++ E D G Y C ++ L+V
Sbjct: 133 -SESRFFVS-SSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 70.3 bits (172), Expect = 2e-14
Identities = 36/272 (13%), Positives = 65/272 (23%), Gaps = 96/272 (35%)
Query: 30 NVTATVGKEALMACVVENLREY----------KVAWVKMITQTILSIHHKVVTQNKRVSI 79
+ A + + E ++ Y KV W + + + RV
Sbjct: 2 SSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSH---------NGSAIRYSDRVKT 52
Query: 80 TFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVV---------------- 122
+ W L + + D+G Y+ ++ + + L
Sbjct: 53 GVTGEQIW-LQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAI 111
Query: 123 ----PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPML 178
R+L V ++EG + L C+ G P P V+W + N + +
Sbjct: 112 AEKNRARVLGGLPD-VVTIQEGKALNLTCNVWGDPPPEVSWLK--------NEKALAQ-- 160
Query: 179 TIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTL 238
D +
Sbjct: 161 -----------------------------------------TDHCNLKFEAGRTA---YF 176
Query: 239 KIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
I + + G Y V N G V V
Sbjct: 177 TINGVSTADSGKYGLVVKNKYGSETSDFTVSV 208
Score = 50.6 bits (121), Expect = 1e-07
Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 10/108 (9%)
Query: 17 EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKR 76
EK VT GK + C V +V+W+K + K + Q
Sbjct: 113 EKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK---------NEKALAQTDH 163
Query: 77 VSITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVP 123
++ F R+ + + V D G Y + N + + V +P
Sbjct: 164 CNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 211
Score = 36.0 bits (83), Expect = 0.007
Identities = 15/162 (9%), Positives = 37/162 (22%), Gaps = 65/162 (40%)
Query: 134 DVVVREGTEVTLECSA----------VGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQ 183
+ T++ ++ +A + V W +G AI Y+ +
Sbjct: 2 SSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSH-NGSAIRYSDRVK--------- 51
Query: 184 LEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSI 243
+TG+ L+I
Sbjct: 52 --------------------------------TGVTGEQI-------------WLQINEP 66
Query: 244 LSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSR 285
+ G Y + + + D + +++ +
Sbjct: 67 TPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQ 108
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 70.1 bits (171), Expect = 2e-14
Identities = 36/245 (14%), Positives = 57/245 (23%), Gaps = 66/245 (26%)
Query: 26 EPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILS-IHHKVVTQNKRVSITFNDH 84
E V L+ L AW K T I I V N +
Sbjct: 5 EAV-PPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSG 63
Query: 85 RSWF-----LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVP-PRILLDRTSTDVVVR 138
R L + + D G Y + + ++ V P T+ V+
Sbjct: 64 REIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVK 123
Query: 139 EGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCH 198
E VTL C + + W N + +
Sbjct: 124 ELDSVTLTCLS-NDIGANIQWLF--------NSQSLQL---------------------- 152
Query: 199 TEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNA 258
M ++ ++ L+I I G Y+C N
Sbjct: 153 --------------TERMTLSQNNS-------------ILRIDPIKREDAGEYQCEISNP 185
Query: 259 LGETD 263
+
Sbjct: 186 VSVRR 190
Score = 46.2 bits (109), Expect = 3e-06
Identities = 30/205 (14%), Positives = 54/205 (26%), Gaps = 31/205 (15%)
Query: 130 RTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFV 189
+ V E V L + AW Y G I + + +
Sbjct: 4 IEAVPPQVAEDNNVLLLVHNLPLALGAFAW---------YKGNTTAIDKEIARFVPNSNM 54
Query: 190 SQTVELHCHTEAF--PASLNYWTNEKGD----MIITGDDYEDSRLINGYSCHMTLKIRSI 243
+ T + + E SL + D + D+ +
Sbjct: 55 NFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPF 114
Query: 244 LSHQFGSYR-------CVAVNALGETDGFIKVYVNL---------VDGDIFQIRKMSRLH 287
L + + N +G ++ +L + I +I + R
Sbjct: 115 LQVTNTTVKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKRED 174
Query: 288 MGAYLCIASNGVVPSVSHRIMVTVH 312
G Y C SN V S+ I + +
Sbjct: 175 AGEYQCEISNPVSVRRSNSIKLDII 199
Score = 40.8 bits (95), Expect = 2e-04
Identities = 18/111 (16%), Positives = 41/111 (36%), Gaps = 15/111 (13%)
Query: 19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
+ + V N T + C+ ++ + W+ + + + +R++
Sbjct: 108 QPVTQPFLQVTNTTVKELDSVTLTCLSNDI-GANIQWLF---------NSQSLQLTERMT 157
Query: 79 ITFNDHRSWFLHLRDVQETDRGWYMCQI-NTV-PMTSQKGYLQVVVPPRIL 127
++ N+ L + ++ D G Y C+I N V S L ++ P
Sbjct: 158 LSQNNS---ILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHHH 205
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 70.5 bits (172), Expect = 3e-14
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 6/92 (6%)
Query: 89 LHLRDVQETDRGWYMCQI-----NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEV 143
L L+ E + + C + +Q L+V+ PR+ + E ++
Sbjct: 144 LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQ 203
Query: 144 TLECSAVGYPEPYVAWRREDGKAINYNGELVP 175
T C A G P P + + DG GE V
Sbjct: 204 TPMCQAWGNPLPELKCLK-DGTFPLPIGESVT 234
Score = 66.6 bits (162), Expect = 7e-13
Identities = 38/296 (12%), Positives = 70/296 (23%), Gaps = 79/296 (26%)
Query: 19 PDMPRFAEPVANVTATVGKEALMACVVENLR---EYKVAWVKMITQTILSIHHKVVTQNK 75
P+ P V + + C ++ L E +V + ++ V N
Sbjct: 4 ATPPQLVSPR---VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQR----LNPTVTYGND 56
Query: 76 RVSITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTD 134
S + + ++ C + + + P + T
Sbjct: 57 SFSAKASVSVTA-------EDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNV--ILTK 107
Query: 135 VVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGEL--------------------- 173
V EGTEVT++C A +P V + + +L
Sbjct: 108 PEVSEGTEVTVKCEA--HPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEV 165
Query: 174 ----------------VPPMLTIPNQLEGAFVS--QTVELHCHTEAFPASLNYWTNEKGD 215
P L + C P +
Sbjct: 166 AGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTF 225
Query: 216 MIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN 271
+ G+ ++ G+Y C A + GE + V V
Sbjct: 226 PLPIGE------------------SVTVTRDLEGTYLCRARSTQGEVTREVTVNVL 263
Score = 39.7 bits (92), Expect = 6e-04
Identities = 36/287 (12%), Positives = 58/287 (20%), Gaps = 122/287 (42%)
Query: 121 VVPPRILLDRTSTDVVVREGTEVTLECSAVGY---PEPYVAWRREDGK------------ 165
PP+++ R + T+ T+ CS G E V D +
Sbjct: 4 ATPPQLVSPRV-----LEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSF 58
Query: 166 ---------------------AINYNGEL-----------VPPMLTIPNQ--LEGAFVSQ 191
I N P + + EG
Sbjct: 59 SAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEG----T 114
Query: 192 TVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSY 251
V + C T G + L +++ S+
Sbjct: 115 EVTVKCEAHPRAK----VTLNGVPAQPLGPRAQ-------------LLLKATPEDNGRSF 157
Query: 252 RCVAVNALGETDGFIKVYVNL------------------------------VDG------ 275
C A + L G
Sbjct: 158 SCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPEL 217
Query: 276 ----------DIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
I + ++R G YLC A + V+ + V V
Sbjct: 218 KCLKDGTFPLPIGESVTVTRDLEGTYLCRARST-QGEVTREVTVNVL 263
Score = 32.3 bits (73), Expect = 0.17
Identities = 15/105 (14%), Positives = 28/105 (26%), Gaps = 26/105 (24%)
Query: 22 PRFAEPV--ANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSI 79
PR E N T + C ++ +K T +
Sbjct: 184 PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI-------------- 229
Query: 80 TFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVP 123
V G Y+C+ +T +++ + V+ P
Sbjct: 230 ---------GESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 265
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 69.1 bits (168), Expect = 1e-13
Identities = 32/297 (10%), Positives = 77/297 (25%), Gaps = 62/297 (20%)
Query: 30 NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFL 89
N A +G+ C + + ++ +++ K+ + ++ + W
Sbjct: 38 NDMAALGEPFSAKCPP--IEDSLLSHRYNDKDNVVNWE-KIGKTRRPLNRRVKNGDLWIA 94
Query: 90 HLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSA 149
+ Y+C + T +G ++ + + ++ + + L C
Sbjct: 95 NY--TSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGI 152
Query: 150 V-GYPEPYVAWRREDGKAINYNGELVPP---MLTIPN-------------------QLEG 186
+ + W + + + + +G L I N
Sbjct: 153 LYAKHYNNITWYK-NNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKND 211
Query: 187 AFVSQTV----------------------------ELHCHTEAFPASLN----YWTNEKG 214
VS+ + C + ++ W N G
Sbjct: 212 IVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSG 271
Query: 215 DMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGS-YRCVAVNALGETDGFIKVYV 270
+I +G TL ++ G+ Y C N + V +
Sbjct: 272 WIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328
Score = 42.9 bits (100), Expect = 7e-05
Identities = 27/229 (11%), Positives = 52/229 (22%), Gaps = 65/229 (28%)
Query: 94 VQETDRG-WYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGY 152
E + ++ +T+P K + P + + + + G + +C +
Sbjct: 3 DIENEITEFFNKMRDTLPAKDSK-----WLNPSCM-FGGTMNDMAALGEPFSAKCPPIED 56
Query: 153 ---------PEPYVAWRREDGK------------------------------AINYNGE- 172
+ V W + NG+
Sbjct: 57 SLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDC 116
Query: 173 ---------LVPPMLTIPNQLEGAFVSQTVELHCH-TEAFPASLNYWTNEKGDMIITGDD 222
PP G ++L+C A + W K + + D
Sbjct: 117 VQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWY--KNNQELIID- 173
Query: 223 YEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN 271
++ L I + G Y C I V
Sbjct: 174 --GTKYSQSGQ---NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRC 217
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 66.8 bits (163), Expect = 1e-13
Identities = 18/150 (12%), Positives = 49/150 (32%), Gaps = 16/150 (10%)
Query: 31 VTATVGKEALMACVVENLREYK--VAWVKMITQTIL---SIHHKVVTQNKRVSITFNDHR 85
+G++ + + + + W K + + + + + N
Sbjct: 9 TWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKN--- 65
Query: 86 SWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVT 144
L ++ ++ D+ Y I +T + + + +R S + T
Sbjct: 66 -GTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKI-----QERVSKPKISWTCINTT 119
Query: 145 LECSAVGYPEPYVAWRREDGKAINYNGELV 174
L C + +P + + DGK + + ++
Sbjct: 120 LTCEVMNGTDPELNLYQ-DGKHLKLSQRVI 148
Score = 30.6 bits (69), Expect = 0.40
Identities = 23/224 (10%), Positives = 48/224 (21%), Gaps = 88/224 (39%)
Query: 129 DRTSTDVVVREGTEVTLEC--SAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEG 186
+ + G ++ L+ + + W + K
Sbjct: 3 ITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDK--------------------- 41
Query: 187 AFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSH 246
++ + D Y+ + NG TLKI+ + +
Sbjct: 42 ------------------KKIAQFRKEKETFKEKDTYKLFK--NG-----TLKIKHLKTD 76
Query: 247 QFGSYRCVAVNALGETDG----FIKVYV-------------------------------- 270
Y+ + G+ +K+
Sbjct: 77 DQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQ 136
Query: 271 ---NLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTV 311
+L K + + C A N V S V+
Sbjct: 137 DGKHLKLSQRVITHKWTTSLSAKFKCTAGNKVS-KESSVEPVSC 179
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 68.2 bits (166), Expect = 3e-13
Identities = 41/315 (13%), Positives = 83/315 (26%), Gaps = 82/315 (26%)
Query: 26 EPVANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDH 84
E + ++ + + C + N + + W K ++T V+ + I +
Sbjct: 10 EEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTP-------VSTEQASRIHQHKE 62
Query: 85 RSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILL--DRTSTDVVVREGT 141
+ L + D G Y C + N+ K + V L + +
Sbjct: 63 K---LWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAG 119
Query: 142 EVTLECS------AVGYPEPYVAWRR-------EDGKAINYNGELV-------------- 174
+ L C P + W + ++ L+
Sbjct: 120 DGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTC 179
Query: 175 ----------------------------PPMLTIP-NQLEGAFVSQTVELHCHTEAFPAS 205
P++ P N+ + ++L C+ +
Sbjct: 180 HASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSD 239
Query: 206 LNYWTNEKGDMIITGDD---------YEDSRLINGYSCHMTLKIRSI-LSHQFGSYRCVA 255
+ YW +I DD E+ + L I I + C A
Sbjct: 240 IAYWK--WNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFA 297
Query: 256 VNALGETDGFIKVYV 270
N G +I++
Sbjct: 298 KNTHGIDAAYIQLIY 312
Score = 41.2 bits (96), Expect = 3e-04
Identities = 22/198 (11%), Positives = 42/198 (21%), Gaps = 62/198 (31%)
Query: 131 TSTDVVVREGTEVTLECSAVGYPEPY-VAWRREDGK------------------------ 165
+V C + W ++D K
Sbjct: 11 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAK 70
Query: 166 ----------AINYNGEL----------VPPMLTIPNQL---EGAFVSQTVELHCHTEAF 202
N + L P L Q + V+ L C F
Sbjct: 71 VEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEF 130
Query: 203 PASLNY------WTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV 256
+ N W + +++ + + L + ++ G+Y C A
Sbjct: 131 FKNENNELPKLQWYKDCKPLLLDNIHFSGVKD--------RLIVMNVAEKHRGNYTCHAS 182
Query: 257 NALGETDGFIKVYVNLVD 274
I + +
Sbjct: 183 YTYLGKQYPITRVIEFIT 200
Score = 29.3 bits (65), Expect = 1.8
Identities = 5/41 (12%), Positives = 9/41 (21%), Gaps = 1/41 (2%)
Query: 272 LVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
+ G Y C+ N + +I
Sbjct: 58 HQHKEKLWFVPAKVEDSGHYYCVVRNS-SYCLRIKISAKFV 97
Score = 28.9 bits (64), Expect = 2.4
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 272 LVDGDIFQIRKMSRLHMGAYLCIASN---GVVPSVSHRIMVTVH 312
D + ++ H G Y C AS G ++ I
Sbjct: 158 SGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITL 201
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 65.4 bits (159), Expect = 6e-13
Identities = 26/153 (16%), Positives = 52/153 (33%), Gaps = 13/153 (8%)
Query: 31 VTATVGKEALMACVVENLRE-YKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHR---- 85
V +G+ + + + W+ +T L+ T++ + +T
Sbjct: 8 VNGILGESVTLPLEFPAGEKVNFITWLF--NETSLAFIVPHETKSPEIHVTNPKQGKRLN 65
Query: 86 ---SWFLHLRDVQETDRGWYMCQINTVPMTSQKGY-LQVVVPPRILLDRTSTDVVVREGT 141
S+ L L +++ D G Y QI+T Y L+++ R + + +
Sbjct: 66 FTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTC 125
Query: 142 EVTLECSAV-GYPEPYVAWRREDGKAINYNGEL 173
E+ L CS W G ++ L
Sbjct: 126 ELHLTCSVEDADDNVSFRWEA-LGNTLSSQPNL 157
Score = 26.5 bits (58), Expect = 9.4
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 289 GAYLCIASNGVVPSVSHRIMVTVHCK 314
Y CIA N V ++S + C+
Sbjct: 169 QDYTCIAENA-VSNLSFSVSAQKLCE 193
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 62.9 bits (153), Expect = 8e-13
Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 10/108 (9%)
Query: 23 RFAEPVANVTATVGKEALMACVVENLREYK-VAWVKMITQTILSIHHKVVTQNK------ 75
R + ++ A G + + L Y+ + W+ Q IL ++
Sbjct: 5 RARGSIPDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKG 64
Query: 76 RVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVP 123
RV + + + LH+ +V++ D+G Y ++ K L+V P
Sbjct: 65 RVYL---EENNGALHISNVRKEDKGTYYMRVLRETENELKITLEVFDP 109
Score = 26.0 bits (57), Expect = 8.6
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 125 RILLDRTSTDVVVREGTEVTLECSAVGYPEPY--VAWRREDGKAI 167
RI + D+ G+ VTL+ PY + W + I
Sbjct: 3 RIRARGSIPDINAYTGSNVTLKIH-KDPLGPYRRITWLHTKNQKI 46
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 66.4 bits (161), Expect = 1e-12
Identities = 45/333 (13%), Positives = 71/333 (21%), Gaps = 76/333 (22%)
Query: 8 GCTYFKTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIH 67
C + + EP + + W L
Sbjct: 5 RCDDWGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEP 64
Query: 68 HKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV----P 123
R+S L R D G Y C + K + V
Sbjct: 65 INFRLPENRISK-----EKDVLWFRPTLLNDTGNYTCMLRN-TTYCSKVAFPLEVVQKDS 118
Query: 124 PRILLDRTSTDVVVREGTEVTLEC-----SAVGYPEPYVAWRREDGK------------- 165
+ + E + C +P + W K
Sbjct: 119 CFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMN 178
Query: 166 ------------------AINYNGE------------------LVPPMLTIPNQLEGAFV 189
NG VPP++ PN
Sbjct: 179 LSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEK 238
Query: 190 S--QTVELHCH----TEAFPASLNYWT--NEKGDMIITGDDYEDSRLIN---GYSCHMTL 238
+ + + C + +WT +K D I +S + + L
Sbjct: 239 EPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQIL 298
Query: 239 KIRSI-LSHQFGSYRCVAVNALGETDGFIKVYV 270
I+ + SY C A +A GE KV
Sbjct: 299 SIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ 331
Score = 37.2 bits (85), Expect = 0.006
Identities = 19/118 (16%), Positives = 37/118 (31%), Gaps = 6/118 (5%)
Query: 13 KTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYK----VAWVKMITQTILSIHH 68
K P + G+E L+ C V V W +
Sbjct: 218 SPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITID 277
Query: 69 KVVTQNKRVSITFNDHRSWFLHLRDVQETDRGW-YMCQ-INTVPMTSQKGYLQVVVPP 124
+ ++ S T ++ R+ L ++ V D Y+C + ++ ++ VP
Sbjct: 278 VTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVPA 335
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 65.8 bits (160), Expect = 2e-12
Identities = 27/261 (10%), Positives = 61/261 (23%), Gaps = 76/261 (29%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P E V NV C + + +W K + + R+ +
Sbjct: 4 PFTKEVVVNVDDDGVISLNFECDKMT-PKSEFSWSK---------DYVSTEDSPRLEVES 53
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQI---------NTVPMTSQKGYLQVVVPPR--ILLDR 130
+++ + +D+ D G Y C + + K L + + + +
Sbjct: 54 KGNKT-KMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVK 112
Query: 131 TSTDVVVREGTEVTLECSAV-GYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFV 189
+ V + E +V A V + N + +
Sbjct: 113 SELAVEILEKGQVRFWMQAEKLSGNAKVNYIF--------NEKEIFE------------- 151
Query: 190 SQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFG 249
K M I + + + + + G
Sbjct: 152 ---------------------GPKYKMHIDRNT-----------GIIEMFMEKLQDEDEG 179
Query: 250 SYRCVAVNALGETDGFIKVYV 270
+Y + + +
Sbjct: 180 TYTFQLQDGKATNHSTVVLVG 200
Score = 58.5 bits (141), Expect = 5e-10
Identities = 27/281 (9%), Positives = 57/281 (20%), Gaps = 86/281 (30%)
Query: 10 TYFKTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLR-EYKVAWVKMITQTILSIHH 68
E + V + E L KV ++ +
Sbjct: 96 RLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIF---------NE 146
Query: 69 KVVTQNKRVSITF-NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRI 126
K + + + + + + + +Q+ D G Y Q+ + L V ++
Sbjct: 147 KEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKL 206
Query: 127 LLDRTST----------------DVVVREGTEVTLECSAVGY-PEPYVAWRREDGKAINY 169
+ V V L+C E ++ W +
Sbjct: 207 QKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYK-------- 258
Query: 170 NGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLI 229
+ +
Sbjct: 259 DEREISV------------------------------------DEKHDFKDGIC------ 276
Query: 230 NGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
TL I G Y + + G+ +K+
Sbjct: 277 -------TLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310
Score = 38.4 bits (89), Expect = 0.002
Identities = 11/147 (7%), Positives = 29/147 (19%), Gaps = 58/147 (39%)
Query: 122 VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIP 181
+ P +V + EC P+ +W + +
Sbjct: 2 IDPFTK--EVVVNVDDDGVISLNFECD-KMTPKSEFSWSK--------DYVSTED----- 45
Query: 182 NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIR 241
+ + ++ G+ + +
Sbjct: 46 -----------------------------SPRLEVESKGNKT-------------KMTFK 63
Query: 242 SILSHQFGSYRCVAVNALGETDGFIKV 268
+ G Y C + G ++
Sbjct: 64 DLGMDDLGIYSCDVTDTDGIASSYLID 90
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 66.4 bits (161), Expect = 2e-12
Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 6/92 (6%)
Query: 89 LHLRDVQETDRGWYMCQ-INTV----PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEV 143
L L+ E + + C V +Q L+V+ PR+ + E ++
Sbjct: 329 LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQ 388
Query: 144 TLECSAVGYPEPYVAWRREDGKAINYNGELVP 175
T C A G P P + + DG GE V
Sbjct: 389 TPMCQAWGNPLPELKCLK-DGTFPLPIGESVT 419
Score = 64.9 bits (157), Expect = 6e-12
Identities = 40/309 (12%), Positives = 74/309 (23%), Gaps = 66/309 (21%)
Query: 1 MAGKFGGGCTYFKTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT 60
+ + + V+ V + + C ++ L A V +
Sbjct: 168 QGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLAL 227
Query: 61 QTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQ 119
Q ++T+ + V D G + SQ+
Sbjct: 228 GD----------QRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQT 277
Query: 120 VVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAW-----------------RRE 162
V + + T V EGTEVT++C A + + +
Sbjct: 278 VTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPED 337
Query: 163 DGK-----AINYNGE-------------LVPPMLTIPN--QLEGAFVSQTVELHCHTEAF 202
+G+ A L P L + + C
Sbjct: 338 NGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGN 397
Query: 203 PASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET 262
P + + G+ ++ G+Y C A + GE
Sbjct: 398 PLPELKCLKDGTFPLPIGE------------------SVTVTRDLEGTYLCRARSTQGEV 439
Query: 263 DGFIKVYVN 271
+ V V
Sbjct: 440 TREVTVNVL 448
Score = 47.2 bits (111), Expect = 3e-06
Identities = 21/184 (11%), Positives = 39/184 (21%), Gaps = 52/184 (28%)
Query: 119 QVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWR------------------ 160
Q V P V++ G V + CS +
Sbjct: 1 QTSVSPS--------KVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVY 52
Query: 161 -----REDG--------------KAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEA 201
+ED P + + V + + L C E
Sbjct: 53 ELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEG 112
Query: 202 -FPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG 260
P + +G+ + + +T + H ++ C L
Sbjct: 113 GAPRANLTVVLLRGEKELKREPAVGEPA------EVTTTVLVRRDHHGANFSCRTELDLR 166
Query: 261 ETDG 264
Sbjct: 167 PQGL 170
Score = 44.9 bits (105), Expect = 2e-05
Identities = 48/386 (12%), Positives = 80/386 (20%), Gaps = 135/386 (34%)
Query: 30 NVTATVGKEALMACVVEN---LREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRS 86
VGK + C VE V ++ K + + V
Sbjct: 95 PSWQPVGKNLTLRCQVEGGAPRANLTVVLLR---------GEKELKREPAVGEPAEVT-- 143
Query: 87 WFLHLRDVQETDRGWYMCQ---------INTVPMTSQKGYLQVVVPPRILLDRTSTDVVV 137
+ ++ + C+ + TS LQ V P + + V+
Sbjct: 144 --TTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPP-QLVSPRVL 200
Query: 138 REGTEVTLECSAVG---YPEPYVAWRREDGK----------------------------- 165
T+ T+ CS G E V D +
Sbjct: 201 EVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQR 260
Query: 166 --AINYNGE-----------LVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNE 212
G P + V + C EA P +
Sbjct: 261 LTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKC--EAHPRAKVTLNGV 318
Query: 213 KGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNL 272
+ L +++ S+ C A + L
Sbjct: 319 PAQPLGPR---------------AQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTREL 363
Query: 273 V------------------------------------------DGDIF----QIRKMSRL 286
DG + ++R
Sbjct: 364 RVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRD 423
Query: 287 HMGAYLCIASNGVVPSVSHRIMVTVH 312
G YLC A + V+ + V V
Sbjct: 424 LEGTYLCRARS-TQGEVTREVTVNVL 448
Score = 43.7 bits (102), Expect = 5e-05
Identities = 35/295 (11%), Positives = 62/295 (21%), Gaps = 33/295 (11%)
Query: 30 NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFL 89
V G L+ C + + + +
Sbjct: 8 KVILPRGGSVLVTCSTSCDQPMLLGI-----------------ETPLPKKELLLPGNNRK 50
Query: 90 HLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSA 149
+ MC N S V ++ G +TL C
Sbjct: 51 VYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQV 110
Query: 150 VG-YPEPY--VAWRREDGKAIN---YNGELVPPMLTIPNQLE--GAFVSQTVELHCHTEA 201
G P V R K + GE T+ + + GA S EL +
Sbjct: 111 EGGAPRANLTVVLLR-GEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQG 169
Query: 202 FPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHM----TLKIRSILSHQFGSYRCVAVN 257
N T+ + +L++ + T+ +
Sbjct: 170 LELFEN--TSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLAL 227
Query: 258 ALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
+ + + C G S VT++
Sbjct: 228 GDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQ-SQETLQTVTIY 281
Score = 29.1 bits (64), Expect = 2.2
Identities = 15/105 (14%), Positives = 28/105 (26%), Gaps = 26/105 (24%)
Query: 22 PRFAEPV--ANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSI 79
PR E N T + C ++ +K T +
Sbjct: 369 PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI-------------- 414
Query: 80 TFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVP 123
V G Y+C+ +T +++ + V+ P
Sbjct: 415 ---------GESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 450
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 65.8 bits (159), Expect = 3e-12
Identities = 47/325 (14%), Positives = 97/325 (29%), Gaps = 33/325 (10%)
Query: 21 MPRFAEPVANVTATVGKEALMACVVENLREY--KVAWVKMITQTILSIHHKVVTQNKRVS 78
P ++ +V + V N+ ++ + + + + ++ + R+
Sbjct: 221 KPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRIL 280
Query: 79 ITFNDHRSWF-LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVV---VPPRILLDRTSTD 134
+ D F + + +++ D G Y+C ++ + +Q V + R+ T
Sbjct: 281 LNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTV 340
Query: 135 VVVREGTEVTLECSAVGYPEPYVA-WRREDGKAINYNGELVPPMLTIPNQLEGAFV---- 189
V G+ V + C + W +G LV + Q EG
Sbjct: 341 VKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEE 400
Query: 190 ----SQTVELH-----------CHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYS- 233
+ TV L+ C T + + + + G +
Sbjct: 401 PGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETL 460
Query: 234 ---CHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIF---QIRKMSRLH 287
CH K S + + +G K +VN + + ++R
Sbjct: 461 KVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRAD 520
Query: 288 MGAYLCIASNGVVPSVSHRIMVTVH 312
G Y C G + + V V
Sbjct: 521 EGWYWCGVKQGHFYGETAAVYVAVE 545
Score = 64.2 bits (155), Expect = 1e-11
Identities = 38/336 (11%), Positives = 79/336 (23%), Gaps = 79/336 (23%)
Query: 6 GGGCTYFKTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWV-----KMIT 60
F E P T +G+ + C + K +
Sbjct: 97 NSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPV 156
Query: 61 QTILSIHHKVVTQNKRVSITFND--HRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGY 117
I S + R+ + + + + ++ +D G Y+CQ + +
Sbjct: 157 LVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNAD 216
Query: 118 LQVVVPPRILLDRTSTDVV-------VREGTEVTLECSAVGYPEPYVAWRREDGKAINYN 170
LQV+ P L+ V C V +A +
Sbjct: 217 LQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFE 276
Query: 171 GELV--------PPMLTIPN---------------------------------------- 182
G ++ + I
Sbjct: 277 GRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPR 336
Query: 183 --QLEGAFVSQTVELHCHTEAFPA-SLNYWTNEKG------DMIITGDDYEDSRLINGYS 233
+ +V + C + S+ YW +G +++ + + ++ S
Sbjct: 337 SPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLS 396
Query: 234 -------CHMTLKIRSILSHQFGSYRCVAVNALGET 262
T+ + + S G Y C+
Sbjct: 397 LLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWR 432
Score = 58.5 bits (140), Expect = 9e-10
Identities = 26/123 (21%), Positives = 40/123 (32%), Gaps = 3/123 (2%)
Query: 27 PVANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHR 85
NVTA +G+ + C Y+ W K ++ + +K + R
Sbjct: 448 VPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSR 507
Query: 86 SWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTL 145
L L V D GWY C + + + V V R S DV + +
Sbjct: 508 LVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK--AAGSRDVSLAKADAAPD 565
Query: 146 ECS 148
E
Sbjct: 566 EKV 568
Score = 56.9 bits (136), Expect = 3e-09
Identities = 21/191 (10%), Positives = 48/191 (25%), Gaps = 15/191 (7%)
Query: 11 YFKTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKV 70
+ + V G + C + + + +
Sbjct: 321 IQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLL 380
Query: 71 VTQNK--------RVSITFNDHRSWF-LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVV 121
V R+S+ F + L + D G+Y C N + ++++
Sbjct: 381 VDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKII 440
Query: 122 VPPRILLDRTSTDVVVREGTEVTLECS----AVGYPEPYVAWRREDGKAINYNGELVPPM 177
L + +V G + + C Y + + W +A+ E
Sbjct: 441 EGEPNL--KVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKA 498
Query: 178 LTIPNQLEGAF 188
++
Sbjct: 499 FVNCDENSRLV 509
Score = 54.6 bits (130), Expect = 2e-08
Identities = 25/147 (17%), Positives = 44/147 (29%), Gaps = 13/147 (8%)
Query: 30 NVTATVGKEALMACVVENL---REYKVAWVK-----MITQTILSIHHKVVTQNKRVSITF 81
V + G + C R + W + I S + R ++T
Sbjct: 9 EVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTN 68
Query: 82 NDHRSWF-LHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVRE 139
F +++ + + D G Y C + S L+V P +L + V
Sbjct: 69 FPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLL--NDTKVYTVDL 126
Query: 140 GTEVTLECSAVGYPEPYVA-WRREDGK 165
G VT+ C ++ G
Sbjct: 127 GRTVTINCPFKTENAQKRKSLYKQIGL 153
Score = 28.0 bits (61), Expect = 4.2
Identities = 11/132 (8%), Positives = 23/132 (17%), Gaps = 42/132 (31%)
Query: 134 DVVVREGTEVTLEC---SAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVS 190
+V EG V++ C W R+ +
Sbjct: 9 EVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGAR------------------------- 43
Query: 191 QTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGS 250
+ + + + + I + G
Sbjct: 44 --------------GGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGR 89
Query: 251 YRCVAVNALGET 262
Y+C
Sbjct: 90 YKCGLGINSRGL 101
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 64.8 bits (157), Expect = 5e-12
Identities = 29/223 (13%), Positives = 50/223 (22%), Gaps = 44/223 (19%)
Query: 91 LRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAV 150
L+ +E G Q ++ L + V G +V L C
Sbjct: 124 LQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVE 183
Query: 151 GYPEPYVAWRREDGK---------------------------------AINYNGE----- 172
G W + + A N G
Sbjct: 184 GRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSV 243
Query: 173 LVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGY 232
V QL A + + PA W ++ + + +
Sbjct: 244 QVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWL--FNGSVLNETSFIFTEFLEPA 301
Query: 233 SCHM----TLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN 271
+ L++ G+Y +A N G+ I
Sbjct: 302 ANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 344
Score = 49.7 bits (118), Expect = 4e-07
Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 10/130 (7%)
Query: 176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCH 235
P L + V V L C E W ++ + + L +
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWI--LTELEQSATVMKSGGLPSL---- 212
Query: 236 MTLKIRSILSHQ-FGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCI 294
L + ++ S + C A N +G + ++V V+ +H
Sbjct: 213 -GLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLH--TAVEMHHWCIPFS 269
Query: 295 ASNGVVPSVS 304
PS+
Sbjct: 270 VDGQPAPSLR 279
Score = 35.1 bits (80), Expect = 0.022
Identities = 15/105 (14%), Positives = 27/105 (25%), Gaps = 4/105 (3%)
Query: 21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
F V TA + V+ + W+ ++L+ + T+ +
Sbjct: 246 NVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLF--NGSVLNETSFIFTEFLEPAAN 303
Query: 81 FNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPP 124
L L + G Y N S + P
Sbjct: 304 ETVRHGC-LRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 60.7 bits (147), Expect = 7e-12
Identities = 25/161 (15%), Positives = 39/161 (24%), Gaps = 54/161 (33%)
Query: 112 TSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEP-YVAWRREDGKAINYN 170
+ G L V PP I ++ G + ++C P P +AW +
Sbjct: 3 SGSSGTLTVNGPPII---SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSW-KENVLESG 58
Query: 171 GELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLIN 230
T Y +
Sbjct: 59 ------------------------------------------------TSGRYTVETIST 70
Query: 231 GYSCHMTLKIRSILSHQFG-SYRCVAVNALGETDGFIKVYV 270
TL I +I+ F Y C A N+ G I++
Sbjct: 71 EEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111
Score = 33.3 bits (76), Expect = 0.030
Identities = 21/143 (14%), Positives = 34/143 (23%), Gaps = 47/143 (32%)
Query: 174 VPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLN-YWT-NEKGDMIITGDDYEDSRLING 231
PP+++ A + ++ C + P W+ E T Y +
Sbjct: 13 GPPIISSTQTQH-ALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE 71
Query: 232 YSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAY 291
TL I +I+ F Y
Sbjct: 72 EGVISTLTISNIVRADFQ---------------------------------------TIY 92
Query: 292 LCIASN--GVVPSVSHRIMVTVH 312
C A N G S + I +
Sbjct: 93 NCTAWNSFG---SDTEIIRLKEQ 112
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 58.9 bits (143), Expect = 2e-11
Identities = 26/149 (17%), Positives = 43/149 (28%), Gaps = 55/149 (36%)
Query: 122 VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIP 181
+PP+I +D+ + EG +T+ C+ G P P V W G+ I+
Sbjct: 4 IPPKIE--ALPSDISIDEGKVLTVACAFTGEPTPEVTWSC-GGRKIH------------- 47
Query: 182 NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIR 241
+ E+G I D TL I
Sbjct: 48 ----------------------------SQEQGRFHIENTDD-----------LTTLIIM 68
Query: 242 SILSHQFGSYRCVAVNALGETDGFIKVYV 270
+ G Y N G + +++
Sbjct: 69 DVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
Score = 39.6 bits (93), Expect = 1e-04
Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 9/100 (9%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P+ ++++ GK +AC +V W + I S + R I
Sbjct: 6 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCG-GRKIHS------QEQGRFHIEN 58
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQV 120
D + L + DVQ+ D G Y + N S + +
Sbjct: 59 TDDLT-TLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 62.8 bits (152), Expect = 2e-11
Identities = 30/271 (11%), Positives = 59/271 (21%), Gaps = 74/271 (27%)
Query: 17 EKPDMPRFAEPVANVTATVGKEALMACV-----VENLREYKVAWVKMITQTILSIHHKVV 71
+ T+ ++ C + + K+ W K +
Sbjct: 116 FENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYK--------DSLLLD 167
Query: 72 TQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVV-------- 122
N++ L + DV D G+Y C + +
Sbjct: 168 KDNEKFLSVRGTTH---LLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEE 224
Query: 123 -PPRILLDRTSTDVVVREGTEVTLECSA---VGYPEPYVAWRREDGKAINYNGELVPPML 178
P I+ + G+ +T+ C G P + W + I
Sbjct: 225 TIPVII--SPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIE---------- 272
Query: 179 TIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTL 238
+ +T ++ N + L
Sbjct: 273 --------------------------------SAYPGGRVTEGPRQEYSENNENYIEVPL 300
Query: 239 KIRSI-LSHQFGSYRCVAVNALGETDGFIKV 268
+ ++CV N L V
Sbjct: 301 IFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
Score = 36.2 bits (83), Expect = 0.009
Identities = 19/144 (13%), Positives = 28/144 (19%), Gaps = 62/144 (43%)
Query: 134 DVVVREGTEVTLECS-------AVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEG 186
EG V L C A P + W + N
Sbjct: 27 REFRLEGEPVALRCPQVPYWLWASVSPRINLTWHK--------NDSARTV---------- 68
Query: 187 AFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSH 246
+ + + D L + L
Sbjct: 69 ------------------------PGEEETRMWAQDG-------------ALWLLPALQE 91
Query: 247 QFGSYRCVAVNALGETDGFIKVYV 270
G+Y C NA I++ V
Sbjct: 92 DSGTYVCTTRNASYCDKMSIELRV 115
Score = 28.1 bits (62), Expect = 3.6
Identities = 5/48 (10%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 267 KVYVNLVDGDIFQIRKMSRLHMGAYLCIASN---GVVPSVSHRIMVTV 311
+ ++++ + ++ G Y C+ + G +++ I + +
Sbjct: 171 EKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRI 218
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 61.3 bits (148), Expect = 2e-11
Identities = 28/253 (11%), Positives = 64/253 (25%), Gaps = 59/253 (23%)
Query: 21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
V +T K ++ C+ + ++ + + + I+
Sbjct: 9 SVSDQHGVVYITENKNKTVVIPCLGSISN---------LNVSLCARYPEKRFVPDGNRIS 59
Query: 81 FNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV---PPRILLDRTSTDVVV 137
++ + + + + G C+ + Q VVV ++ S + +
Sbjct: 60 WDSKKGFTIP--SYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIEL 117
Query: 138 REGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHC 197
G ++ L C+A + +
Sbjct: 118 SVGEKLVLNCTARTELNVGIDF-------------------------------------- 139
Query: 198 HTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN 257
+ Y +++ + D + TL I + G Y C A +
Sbjct: 140 -------NWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASS 192
Query: 258 ALGETDGFIKVYV 270
L V V
Sbjct: 193 GLMTKKNSTFVRV 205
Score = 44.0 bits (103), Expect = 2e-05
Identities = 16/119 (13%), Positives = 34/119 (28%), Gaps = 1/119 (0%)
Query: 9 CTYFKTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHH 68
Y P + +VG++ ++ C + + +
Sbjct: 93 IMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKK 152
Query: 69 KVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRI 126
V K S + L + V +D+G Y C + + +++V P
Sbjct: 153 LVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPIE 211
Score = 30.5 bits (68), Expect = 0.47
Identities = 8/34 (23%), Positives = 10/34 (29%)
Query: 278 FQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTV 311
F I + G C A S +V V
Sbjct: 66 FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVV 99
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 59.0 bits (143), Expect = 3e-11
Identities = 23/120 (19%), Positives = 37/120 (30%), Gaps = 13/120 (10%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P + N T V +++CV + W K V TQ+ R+
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKD--------GVLVSTQDSRIKQLE 60
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREG 140
N L +R + D G Y C + Y++V + TD +
Sbjct: 61 NGV----LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIPS 116
Score = 56.3 bits (136), Expect = 2e-10
Identities = 30/151 (19%), Positives = 40/151 (26%), Gaps = 65/151 (43%)
Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPN 182
PP I + + V L C A G P P + WR+ +G LV
Sbjct: 8 PPVIR--QGPVNQTVAVDGTFVLSCVATGSPVPTILWRK--------DGVLVST------ 51
Query: 183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLI---NGYSCHMTLK 239
+DSR+ NG L+
Sbjct: 52 -----------------------------------------QDSRIKQLENG-----VLQ 65
Query: 240 IRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
IR G Y C+A GE + V
Sbjct: 66 IRYAKLGDTGRYTCIASTPSGEATWSAYIEV 96
Score = 30.1 bits (68), Expect = 0.31
Identities = 25/144 (17%), Positives = 36/144 (25%), Gaps = 52/144 (36%)
Query: 171 GELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLIN 230
G PP++ + V T L C P W K ++++ D +L N
Sbjct: 4 GSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWR--KDGVLVSTQDSRIKQLEN 61
Query: 231 GYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGA 290
G L+IR G
Sbjct: 62 G-----VLQIRYA----------------------------------------KLGDTGR 76
Query: 291 YLCIASN--GVVPSVSHRIMVTVH 312
Y CIAS G + + V
Sbjct: 77 YTCIASTPSG---EATWSAYIEVQ 97
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 59.0 bits (142), Expect = 4e-11
Identities = 24/152 (15%), Positives = 41/152 (26%), Gaps = 29/152 (19%)
Query: 122 VPPRILLD---RTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPML 178
PP+I LD R +VV G ++ L+ G P P V W++ + P
Sbjct: 12 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAP 71
Query: 179 TIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTL 238
+ + + +G + +
Sbjct: 72 EDTGDSDEWVFDKKLL---------------CETEGRVRVETTKDRS-----------IF 105
Query: 239 KIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
+ G Y N +GE + V V
Sbjct: 106 TVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 137
Score = 30.5 bits (68), Expect = 0.38
Identities = 12/107 (11%), Positives = 24/107 (22%), Gaps = 21/107 (19%)
Query: 18 KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVK-------------------- 57
K + + G + + + V W K
Sbjct: 15 KIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDT 74
Query: 58 MITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMC 104
+ + + RV + RS + ++ D G Y
Sbjct: 75 GDSDEWVFDKKLLCETEGRVRVETTKDRSI-FTVEGAEKEDEGVYTV 120
Score = 26.6 bits (58), Expect = 6.9
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 274 DGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTV 311
D IF + + G Y N V + V V
Sbjct: 101 DRSIFTVEGAEKEDEGVYTVTVKNPVG-EDQVNLTVKV 137
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 58.3 bits (141), Expect = 5e-11
Identities = 28/144 (19%), Positives = 43/144 (29%), Gaps = 50/144 (34%)
Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPM 177
Q PPRI+ +D++V +G TL C A G P P + W + G+ + + +
Sbjct: 4 RQEDFPPRIV--EHPSDLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVETDKDDPRSH 60
Query: 178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMT 237
+ G+ + + D
Sbjct: 61 RMLLP--SGSLFFLRIVHGRKSR-----------------------PDE----------- 84
Query: 238 LKIRSILSHQFGSYRCVAVNALGE 261
G Y CVA N LGE
Sbjct: 85 -----------GVYVCVARNYLGE 97
Score = 40.9 bits (96), Expect = 5e-05
Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 13/111 (11%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVK----MITQTILSIHHKVVTQNKRV 77
PR E +++ + G+ A + C E + W K + T H+++ + +
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 78 SITFNDHRSWFLHLRDVQETDRGWYMCQ-INTV-PMTSQKGYLQVVVPPRI 126
H D G Y+C N + S L+V
Sbjct: 70 FFLRIVHGR-------KSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHH 113
Score = 37.9 bits (88), Expect = 8e-04
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 272 LVDGDIFQIR----KMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
L G +F +R + SR G Y+C+A N + +VSH + V
Sbjct: 64 LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA 108
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 60.2 bits (145), Expect = 6e-11
Identities = 24/193 (12%), Positives = 52/193 (26%), Gaps = 49/193 (25%)
Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGE----- 172
++ P + + + G V+L CS G P+ +WR + +N
Sbjct: 1 FKIETTPE-------SRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTT 53
Query: 173 -----------------------------------LVPPMLTIPNQLEGAFVSQTVELHC 197
P + + + + C
Sbjct: 54 STLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKC 113
Query: 198 H-TEAFPASLNYWTNEKGDMIITGDDY-EDSRLINGYSCHMTLKIRSILSHQFGSYRCVA 255
+ +P KGD ++ ++ ED+ + + + + ++ C A
Sbjct: 114 SVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRA 173
Query: 256 VNALGETDGFIKV 268
+ E D V
Sbjct: 174 KLHIDEMDSVPTV 186
Score = 55.5 bits (133), Expect = 2e-09
Identities = 20/142 (14%), Positives = 42/142 (29%), Gaps = 19/142 (13%)
Query: 26 EPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHR 85
P + A +G + C +W Q ++ KV + +
Sbjct: 6 TPESRYLAQIGDSVSLTCSTTGCESPFFSWRT---QIDSPLNGKVTNEGTTST------- 55
Query: 86 SWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVT 144
L + V + Y+C + +++ P+ + G +T
Sbjct: 56 ---LTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPE--IHLSGPLEAGKPIT 110
Query: 145 LECSAVG-YPEPY--VAWRRED 163
++CS YP + + D
Sbjct: 111 VKCSVADVYPFDRLEIDLLKGD 132
Score = 32.4 bits (73), Expect = 0.11
Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 25/123 (20%)
Query: 19 PDMPRFAEPVANVTATVGKEALMACVVENLR---EYKVAWVK----MITQTILSIHHKVV 71
P+ E + GK + C V ++ ++ +K M +Q L +
Sbjct: 89 YSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKS 148
Query: 72 TQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQ-------INTVPMTSQKG-YLQVVVP 123
+ K + +TF E +C+ +++VP Q LQV +
Sbjct: 149 LETKSLEVTFTPVI----------EDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYIS 198
Query: 124 PRI 126
P+
Sbjct: 199 PKN 201
Score = 30.1 bits (67), Expect = 0.67
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 8/87 (9%)
Query: 191 QTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGS 250
+V L C T + W + D + G + TL + + S
Sbjct: 17 DSVSLTCSTTGCESPFFSWRTQ-IDSPLNGKVTNEGT-------TSTLTMNPVSFGNEHS 68
Query: 251 YRCVAVNALGETDGFIKVYVNLVDGDI 277
Y C A + + I+V + D
Sbjct: 69 YLCTATCESRKLEKGIQVEIYSFPKDP 95
Score = 29.0 bits (64), Expect = 1.5
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 267 KVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
N + +S + +YLC A+ + I V ++
Sbjct: 45 GKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESR-KLEKGIQVEIY 89
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 59.8 bits (145), Expect = 7e-11
Identities = 23/164 (14%), Positives = 46/164 (28%), Gaps = 56/164 (34%)
Query: 107 NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKA 166
++ + P++ + V EG +V + C YP ++W R
Sbjct: 3 YAAASSALVPRGSHMYAPKL---QGPVAVYTWEGNQVNITCEVFAYPSATISWFR----- 54
Query: 167 INYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDS 226
+G+L+P + ++ I
Sbjct: 55 ---DGQLLPS----------------------------------SNYSNIKIYNTPS--- 74
Query: 227 RLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
L++ + FG+Y C AVN +G+ +
Sbjct: 75 --------ASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQ 110
Score = 43.7 bits (103), Expect = 2e-05
Identities = 22/123 (17%), Positives = 43/123 (34%), Gaps = 16/123 (13%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT- 80
P+ PV V G + + C V ++W + +++ + +I
Sbjct: 20 PKLQGPV-AVYTWEGNQVNITCEVFAYPSATISWFR---------DGQLLPSSNYSNIKI 69
Query: 81 FNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPP----RILLDRTSTDV 135
+N + +L + E D G Y C N + S + L P ++ S+
Sbjct: 70 YNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQVEPYSSTA 129
Query: 136 VVR 138
V+
Sbjct: 130 QVQ 132
Score = 30.9 bits (70), Expect = 0.36
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 6/53 (11%)
Query: 261 ETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASN--GVVPSVSHRIMVTV 311
IK+Y N ++ S G Y C A N G S ++
Sbjct: 62 SNYSNIKIY-NTPSASYLEVTPDSENDFGNYNCTAVNRIG---QESLEFILVQ 110
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 57.0 bits (138), Expect = 9e-11
Identities = 23/153 (15%), Positives = 41/153 (26%), Gaps = 57/153 (37%)
Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPM 177
+ + RIL + V EG C G P P V W R G+++
Sbjct: 9 SKTTLAARIL--TKPRSMTVYEGESARFSCDTDGEPVPTVTWLR--------KGQVLST- 57
Query: 178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMT 237
+ + + T T
Sbjct: 58 ---------------------------------SARHQVTTTKYKS-------------T 71
Query: 238 LKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
+I S+ + G+Y V N+ G+ + + +
Sbjct: 72 FEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 41.2 bits (97), Expect = 4e-05
Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 11/100 (11%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
R ++T G+ A +C + V W++ +V++ + R +T
Sbjct: 15 ARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLR---------KGQVLSTSARHQVTT 65
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQV 120
++S + VQ +D G Y + N+ + L +
Sbjct: 66 TKYKS-TFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 57.1 bits (138), Expect = 1e-10
Identities = 19/111 (17%), Positives = 42/111 (37%), Gaps = 15/111 (13%)
Query: 29 ANVTATVGKEALMACVVENLRE-----YKVAWVKMITQTILSIHHK----VVTQNKRVSI 79
V +G + C ++ ++ W + +++ H+ +++KR+
Sbjct: 8 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEF 67
Query: 80 TF----NDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGY--LQVVVPP 124
+ R+ L + ++ D G Y C T P S+ L+V+ P
Sbjct: 68 VAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
Score = 26.3 bits (58), Expect = 7.4
Identities = 25/159 (15%), Positives = 38/159 (23%), Gaps = 52/159 (32%)
Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEP-----YVAWRREDGKAINYNGE 172
+ V P V G VTL C + W R
Sbjct: 2 VVVQAPT---------QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGE-------- 44
Query: 173 LVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGY 232
+ + +Q +G S++ L A L + + + G ED
Sbjct: 45 --SGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNAS-----LRMFGLRVEDE------ 91
Query: 233 SCHMTLKIRSILSHQFGSYRC-VAVNALGETDGFIKVYV 270
G+Y C G I + V
Sbjct: 92 ----------------GNYTCLFVTFPQGSRSVDIWLRV 114
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 56.6 bits (137), Expect = 1e-10
Identities = 19/149 (12%), Positives = 36/149 (24%), Gaps = 57/149 (38%)
Query: 122 VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIP 181
+ P+IL + ++ G LE +G P+P W
Sbjct: 1 LKPKILTASR--KIKIKAGFTHNLEVDFIGAPDPTATWTV-GDSGA-------------- 43
Query: 182 NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIR 241
++++ ++
Sbjct: 44 -----------------------------ALAPELLVDAKSS-----------TTSIFFP 63
Query: 242 SILSHQFGSYRCVAVNALGETDGFIKVYV 270
S G+Y+ N LGE + +V V
Sbjct: 64 SAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 41.9 bits (99), Expect = 1e-05
Identities = 6/83 (7%), Positives = 15/83 (18%), Gaps = 10/83 (12%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P+ + G + + W + +
Sbjct: 3 PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTV---------GDSGAALAPELLVDA 53
Query: 82 NDHRSWFLHLRDVQETDRGWYMC 104
+ + + D G Y
Sbjct: 54 KSSTT-SIFFPSAKRADSGNYKL 75
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 56.4 bits (136), Expect = 2e-10
Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAV-GYPEPYVAWRREDGKAINYNGELVPP 176
L P ++ VR G +VT C+A P + W R +
Sbjct: 3 LAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNG 62
Query: 177 MLTIPN 182
+LTI N
Sbjct: 63 ILTIRN 68
Score = 35.9 bits (83), Expect = 0.002
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 17/99 (17%)
Query: 26 EPVANVTATVGKEALMACVVEN-LREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDH 84
E + + G + C ++ Y + W ++ + S +
Sbjct: 15 EEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS------------RAMDFNG 62
Query: 85 RSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVV 122
L +R+VQ +D G Y+C N M L V V
Sbjct: 63 I---LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQV 98
Score = 33.2 bits (76), Expect = 0.021
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 272 LVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
+ I IR + G Y+C SN + V
Sbjct: 58 MDFNGILTIRNVQPSDAGTYVCTGSNM-FAMDQGTATLHVQ 97
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 56.6 bits (137), Expect = 2e-10
Identities = 19/152 (12%), Positives = 36/152 (23%), Gaps = 57/152 (37%)
Query: 120 VVVPPRILLDRTSTD-VVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPML 178
+ PP+I L R + + G ++ L G P P V W + G +
Sbjct: 18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTK-GGAPL----------- 65
Query: 179 TIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTL 238
+ + + D++
Sbjct: 66 ---------------------------------DTSRVHVRTSDFDTV-----------F 81
Query: 239 KIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
+R G Y + I++ V
Sbjct: 82 FVRQAARSDSGEYELSVQIENMKDTATIRIRV 113
Score = 35.8 bits (83), Expect = 0.004
Identities = 16/107 (14%), Positives = 32/107 (29%), Gaps = 15/107 (14%)
Query: 22 PRFAEPVA---NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
P+ P VG++ + + +V W K + RV
Sbjct: 22 PKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKG-GAPL---------DTSRVH 71
Query: 79 ITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPP 124
+ +D + +R +D G Y + + ++VV
Sbjct: 72 VRTSDFDT-VFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117
Score = 28.9 bits (65), Expect = 0.86
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 267 KVYVNLVDGD-IFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTV 311
+V+V D D +F +R+ +R G Y + + I + V
Sbjct: 69 RVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENM-KDTATIRIRV 113
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 56.5 bits (136), Expect = 2e-10
Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 4/103 (3%)
Query: 26 EPVANVTATVGKEALMACVVE--NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND 83
E N++A G ++ C + + +V W + + +
Sbjct: 8 ETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAP 67
Query: 84 HRSWFLHLRDVQETDRGWYMCQINTVPMTSQKG--YLQVVVPP 124
L L+ + D G Y C +T P + G +L+V+
Sbjct: 68 GPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESS 110
Score = 31.0 bits (70), Expect = 0.16
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 130 RTSTDVVVREGTEVTLECSAVGYPEP--YVAWRREDGKAINYNGE 172
T+ ++ +G + L+C V W ++D N +
Sbjct: 8 ETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNAD 52
Score = 29.5 bits (66), Expect = 0.64
Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 12/94 (12%)
Query: 187 AFVSQTVELHCHTEAFPASLNY--WTNEKGDMIITGDDYEDS-------RLINGYSCHMT 237
A ++ L CH + A + W + + I D R+ G +
Sbjct: 15 AEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPG--LG 72
Query: 238 LKIRSILSHQFGSYRC-VAVNALGETDGFIKVYV 270
L ++S+ + G Y C G G I + V
Sbjct: 73 LTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEV 106
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 56.2 bits (136), Expect = 2e-10
Identities = 22/148 (14%), Positives = 32/148 (21%), Gaps = 57/148 (38%)
Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPN 182
P+I+ + D VR G V L G W + K I
Sbjct: 7 GPQII--QFPEDQKVRAGESVELFGKVTGTQPITCTWMK-FRKQI--------------- 48
Query: 183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRS 242
E M + + L I +
Sbjct: 49 ----------------------------QESEHMKVENSEN-----------GSKLTILA 69
Query: 243 ILSHQFGSYRCVAVNALGETDGFIKVYV 270
G Y + N LG + + V
Sbjct: 70 ARQEHCGCYTLLVENKLGSRQAQVNLTV 97
Score = 48.1 bits (115), Expect = 2e-07
Identities = 15/105 (14%), Positives = 37/105 (35%), Gaps = 11/105 (10%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P+ + + G+ + V + W+K K + +++ + +
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKF---------RKQIQESEHMKVEN 58
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPR 125
+++ S L + ++ G Y + N + + L VV P
Sbjct: 59 SENGS-KLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPD 102
Score = 29.6 bits (67), Expect = 0.49
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 274 DGDIFQIRKMSRLHMGAYLCIASN--GVVPSVSHRIMVTV 311
+G I + H G Y + N G S ++ +TV
Sbjct: 61 NGSKLTILAARQEHCGCYTLLVENKLG---SRQAQVNLTV 97
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 55.8 bits (135), Expect = 3e-10
Identities = 21/154 (13%), Positives = 36/154 (23%), Gaps = 59/154 (38%)
Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPM 177
+ V P I + G + + C+A G P P + W ++
Sbjct: 5 VLERVAPTIT--GNLENQTTSIGESIEVSCTASGNPPPQIMWFKD--------------- 47
Query: 178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMT 237
+ ++ L +G
Sbjct: 48 ------------------------------------NETLVEDSGI---VLKDGNR---N 65
Query: 238 LKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN 271
L IR + G Y C A + LG +
Sbjct: 66 LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 99
Score = 51.6 bits (124), Expect = 9e-09
Identities = 15/106 (14%), Positives = 39/106 (36%), Gaps = 13/106 (12%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P + N T ++G+ ++C ++ W K ++ + ++ + +
Sbjct: 11 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFK---------DNETLVEDSGIVLKD 61
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRI 126
+ L +R V++ D G Y CQ + + + + +
Sbjct: 62 GNRN---LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEK 104
Score = 27.3 bits (61), Expect = 2.4
Identities = 20/141 (14%), Positives = 35/141 (24%), Gaps = 48/141 (34%)
Query: 172 ELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLING 231
E V P +T + + + +++E+ C P W K + + D L +G
Sbjct: 7 ERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWF--KDNETLVEDS--GIVLKDG 62
Query: 232 YSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAY 291
L IR + G Y
Sbjct: 63 NR---NLTIRRVRKE----------------------------------------DEGLY 79
Query: 292 LCIASNGVVPSVSHRIMVTVH 312
C A + V+ +
Sbjct: 80 TCQACS-VLGCAKVEAFFIIE 99
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 56.8 bits (137), Expect = 5e-10
Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 8/95 (8%)
Query: 89 LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECS 148
+ D G Y CQ N S L+V + +L + V +E + L C
Sbjct: 56 YFIDAATVNDSGEYRCQTNL-STLSDPVQLEVHIGWLLL---QAPRWVFKEEDPIHLRCH 111
Query: 149 A-VGYPEPYVAWRREDGKAINYNGELVPPMLTIPN 182
+ V + + +GK Y IP
Sbjct: 112 SWKNTALHKVTYLQ-NGKDRKYFHH--NSDFHIPK 143
Score = 48.3 bits (115), Expect = 4e-07
Identities = 22/179 (12%), Positives = 39/179 (21%), Gaps = 53/179 (29%)
Query: 119 QVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPY-VAWRREDGKAINYNGELV--- 174
+ P+ ++ V E VTL+C PE W + +
Sbjct: 1 RTEDLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDA 60
Query: 175 -----------------------------PPMLTIPNQ--LEGAFVSQTVELHCHTEAFP 203
+L P E + L CH+
Sbjct: 61 ATVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEE----DPIHLRCHSWKNT 116
Query: 204 ASLNY-WTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE 261
A + ++ + + + I GSY C +
Sbjct: 117 ALHKVTY-------------LQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKN 162
Score = 27.9 bits (62), Expect = 2.7
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 89 LHLRDVQETDRGWYMC--QINTVPMTSQKGYLQV 120
H+ D G Y C + + ++S+ + +
Sbjct: 139 FHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 55.0 bits (133), Expect = 5e-10
Identities = 28/154 (18%), Positives = 39/154 (25%), Gaps = 60/154 (38%)
Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPM 177
+ V P D V EG + L+CS G P P + W NG+ +
Sbjct: 6 SGMEVAPSFS--SVLKDCAVIEGQDFVLQCSVRGTPVPRITWLL--------NGQPIQY- 54
Query: 178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMT 237
Sbjct: 55 ------------------------------------ARSTCEAGVA-------------E 65
Query: 238 LKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN 271
L I+ L G+Y C+A NALG+ V V+
Sbjct: 66 LHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99
Score = 36.1 bits (84), Expect = 0.002
Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 14/100 (14%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P F+ + + G++ ++ C V ++ W+ + Q R +
Sbjct: 12 PSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLL----------NGQPIQYARSTCEA 61
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQV 120
LH++D D G Y C N + S ++ V
Sbjct: 62 GVAE---LHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 56.4 bits (136), Expect = 6e-10
Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 8/95 (8%)
Query: 89 LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECS 148
+ D G Y CQ S +L V+ +L + + +EG + L C
Sbjct: 53 SYRFKANNNDSGEYTCQTGQ-TSLSDPVHLTVLFEWLVL---QTPHLEFQEGETIMLRCH 108
Query: 149 AV-GYPEPYVAWRREDGKAINYNGELVPPMLTIPN 182
+ P V + + +GK+ ++ P +IP
Sbjct: 109 SWKDKPLVKVTFFQ-NGKSQKFSHL--DPTFSIPQ 140
Score = 53.7 bits (129), Expect = 6e-09
Identities = 24/175 (13%), Positives = 41/175 (23%), Gaps = 53/175 (30%)
Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPY-VAWRREDGKAINYNGELV------- 174
PP+ +L + V + VTL C PE + W +
Sbjct: 2 PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNN 61
Query: 175 -------------------------PPMLTIPNQ--LEGAFVSQTVELHCHTEAFPASLN 207
+L P+ EG +T+ L CH+ +
Sbjct: 62 DSGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEG----ETIMLRCHSWKDKPLVK 117
Query: 208 Y-WTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE 261
+ +++ + T I G Y C
Sbjct: 118 VTF-------------FQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTL 159
Score = 42.1 bits (99), Expect = 6e-05
Identities = 26/183 (14%), Positives = 43/183 (23%), Gaps = 66/183 (36%)
Query: 173 LVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNY-WTNEKGDMIITGDDYEDSRLING 231
L PP + + L+ +V L C P S + W + + LI
Sbjct: 9 LEPPWINV---LQE----DSVTLTCQGARSPESDSIQW-------------FHNGNLIPT 48
Query: 232 YSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN-------------------- 271
++ ++ G Y C + V
Sbjct: 49 HTQP--SYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLR 106
Query: 272 -----------------------LVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIM 308
F I + + H G Y C + G S +
Sbjct: 107 CHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVT 166
Query: 309 VTV 311
+TV
Sbjct: 167 ITV 169
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 54.8 bits (132), Expect = 6e-10
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 9/104 (8%)
Query: 28 VANVTATVGKEALMACVVEN-----LREYKVAWVKMITQTILSIHH---KVVTQNKRVSI 79
+ + A + A + C N L E V W + ++ K + + +
Sbjct: 1 MLKIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMG 60
Query: 80 -TFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV 122
T D SW L L ++Q D+G Y C I+ T Q+
Sbjct: 61 RTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNS 104
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 54.7 bits (132), Expect = 7e-10
Identities = 17/113 (15%), Positives = 27/113 (23%), Gaps = 12/113 (10%)
Query: 18 KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRV 77
+ E + +V G A C + V W + N+
Sbjct: 10 QGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFL---------DKTPLHANELN 60
Query: 78 SITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDR 130
I L LR + D G + L+V P +
Sbjct: 61 EIDAQPGGYHVLTLRQLALKDSGTIYFEAGDQ---RASAALRVTEKPSVFSRS 110
Score = 43.5 bits (103), Expect = 7e-06
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 120 VVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
+V R+ + DV V+EG+ T C V W D +
Sbjct: 8 LVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFL-DKTPL 54
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 56.9 bits (137), Expect = 7e-10
Identities = 33/253 (13%), Positives = 65/253 (25%), Gaps = 52/253 (20%)
Query: 21 MPRFAEPVANVTATVGKEALMACVVENLREY-KVAWVKMITQTILSIHHKVVTQNKRVSI 79
+ F + V + E L KV ++ + K + + + +
Sbjct: 2 IDPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIF---------NEKEIFEGPKYKM 52
Query: 80 TFNDHRSWF-LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVR 138
+ + + + +Q+ D G Y Q+ K
Sbjct: 53 HIDRNTGIIEMFMEKLQDEDEGTYTFQL-----QDGKA---------------------- 85
Query: 139 EGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCH 198
T + V + + ++E P E V L C
Sbjct: 86 -----TNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWE-VTGECNVLLKCK 139
Query: 199 TEAFPASLN-YWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN 257
+ W K + I+ D+ +G TL I G Y + +
Sbjct: 140 VANIKKETHIVWY--KDEREISVDEK--HDFKDGIC---TLLITEFSKKDAGIYEVILKD 192
Query: 258 ALGETDGFIKVYV 270
G+ +K+
Sbjct: 193 DRGKDKSRLKLVD 205
Score = 40.7 bits (95), Expect = 2e-04
Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 14/91 (15%)
Query: 17 EKPDMPRFAEPVANVTATVGKEALMACVVENLR-EYKVAWVKMITQTILSIHHKVVTQNK 75
+ P F E + + T L+ C V N++ E + W K + ++ ++
Sbjct: 113 IRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYK---------DEREISVDE 162
Query: 76 RVSITFNDHRSWFLHLRDVQETDRGWYMCQI 106
+ L + + + D G Y +
Sbjct: 163 KHDFKDGICT---LLITEFSKKDAGIYEVIL 190
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 54.7 bits (132), Expect = 9e-10
Identities = 23/153 (15%), Positives = 37/153 (24%), Gaps = 55/153 (35%)
Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPM 177
+ P + V EG V LEC P P + W+
Sbjct: 10 HEHKRAPMFI--YKPQSKKVLEGDSVKLECQISAIPPPKLFWK----------------- 50
Query: 178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMT 237
+ + ++ + S + T
Sbjct: 51 -----------------------------------RNNEMVQFNTDRISLYQDNTGRV-T 74
Query: 238 LKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
L I+ + G Y AVN G T ++ V
Sbjct: 75 LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDV 107
Score = 54.3 bits (131), Expect = 1e-09
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 9/106 (8%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P F + G + C + + K+ W + + V R+S+
Sbjct: 16 PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRN--------NEMVQFNTDRISLYQ 67
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRI 126
++ L ++DV + D GWY +N +T+ L V P
Sbjct: 68 DNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQ 113
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 56.1 bits (135), Expect = 9e-10
Identities = 19/148 (12%), Positives = 46/148 (31%), Gaps = 14/148 (9%)
Query: 31 VTATVGKEALMACVVENLRE--YKVAWVKMITQ-TILSIHHKVVTQNKRVSITFNDHRSW 87
V +G + + + +V W + T K ++ I N
Sbjct: 6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN----G 61
Query: 88 FLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLE 146
L ++++ D G Y + +T L + + + S ++ E + TL
Sbjct: 62 DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMV-----SKPMIYWECSNATLT 116
Query: 147 CSAVGYPEPYVAWRREDGKAINYNGELV 174
C + + + + + + +
Sbjct: 117 CEVLEGTDVELKLYQ-GKEHLRSLRQKT 143
Score = 28.8 bits (64), Expect = 1.8
Identities = 14/123 (11%), Positives = 38/123 (30%), Gaps = 7/123 (5%)
Query: 187 AFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHM----TLKIRS 242
+ + L+ ++ E+G ++ + + + + LKI++
Sbjct: 8 GALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKN 67
Query: 243 ILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYL-CIASNGVVP 301
+ G+Y + G + ++L ++ + A L C G
Sbjct: 68 LTRDDSGTYNVTVYSTNGTR--ILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDV 125
Query: 302 SVS 304
+
Sbjct: 126 ELK 128
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 56.4 bits (136), Expect = 1e-09
Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 6/94 (6%)
Query: 89 LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECS 148
+ D G Y CQ + S L+V + +L + V +E + L C
Sbjct: 56 YFIDAATVDDSGEYRCQTQLSTL-SDPVQLEVHIGWLLL---QAPRWVFKEEDPIHLRCH 111
Query: 149 AVGYPEPYVAWRREDGKAINYNGELVPPMLTIPN 182
+ + ++GK Y IP
Sbjct: 112 SWKNTALHKVTYLQNGKGRKYFHH--NSDFYIPK 143
Score = 47.6 bits (113), Expect = 1e-06
Identities = 22/179 (12%), Positives = 39/179 (21%), Gaps = 53/179 (29%)
Query: 119 QVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI-NYNGELV--- 174
+ P+ ++ V E VTL+C PE + I +
Sbjct: 1 RTEDLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASSYFIDA 60
Query: 175 -----------------------------PPMLTIPNQ--LEGAFVSQTVELHCHTEAFP 203
+L P E + L CH+
Sbjct: 61 ATVDDSGEYRCQTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEE----DPIHLRCHSWKNT 116
Query: 204 ASLNY-WTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE 261
A + ++ + + + I GSY C +
Sbjct: 117 ALHKVTY-------------LQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKN 162
Score = 41.4 bits (97), Expect = 1e-04
Identities = 24/186 (12%), Positives = 46/186 (24%), Gaps = 61/186 (32%)
Query: 171 GELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLIN 230
+L ++ + Q +V L C P + + + LI+
Sbjct: 3 EDLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQW------------FHNESLIS 50
Query: 231 GYSCHMTLKIRSILSHQFGSYRCVAVNAL-------------------------GET--- 262
+ + I + G YRC + +
Sbjct: 51 SQAS--SYFIDAATVDDSGEYRCQTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHL 108
Query: 263 -----------------DGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSH 305
+G + Y + F I K + G+Y C G S
Sbjct: 109 RCHSWKNTALHKVTYLQNGKGRKYFH--HNSDFYIPKATLKDSGSYFCRGLVGSKNVSSE 166
Query: 306 RIMVTV 311
+ +T+
Sbjct: 167 TVQITI 172
Score = 30.6 bits (69), Expect = 0.48
Identities = 6/45 (13%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 84 HRSWFLHLRDVQETDRGWYMCQ--INTVPMTSQKGYLQVVVPPRI 126
H + ++ D G Y C+ + + ++S+ + + +
Sbjct: 134 HHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAV 178
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 57.8 bits (140), Expect = 1e-09
Identities = 35/194 (18%), Positives = 49/194 (25%), Gaps = 66/194 (34%)
Query: 87 WFLHLRDVQETDRGWYMCQ---------INTVPMTSQKGYLQVVVPPRILLDRTSTDVVV 137
W R +R C P Y + DR + V V
Sbjct: 340 WVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRAR--IRDRKAQQVFV 397
Query: 138 REGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHC 197
EG V C A G P P + W LV + + +
Sbjct: 398 DEGHTVQFVCRADGDPPPAILWLSP-------RKHLV-----------------SAKSNG 433
Query: 198 HTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN 257
FP +G TL++R G+Y C+A N
Sbjct: 434 RLTVFP--------------------------DG-----TLEVRYAQVQDNGTYLCIAAN 462
Query: 258 ALGETDGFIKVYVN 271
A G ++V
Sbjct: 463 AGGNDSMPAHLHVR 476
Score = 38.2 bits (89), Expect = 0.003
Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 13/106 (12%)
Query: 16 CEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNK 75
C + + V G C + + W+ + ++S N
Sbjct: 382 CRRARIRDRKAQ--QVFVDEGHTVQFVCRADGDPPPAILWLS-PRKHLVS-----AKSNG 433
Query: 76 RVSITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQV 120
R+++ + L +R Q D G Y+C N S +L V
Sbjct: 434 RLTVFPDG----TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
Score = 35.1 bits (81), Expect = 0.025
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 261 ETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
+++G + V+ + ++R G YLCIA+N + S + V
Sbjct: 430 KSNGRLTVFPD----GTLEVRYAQVQDNGTYLCIAAN-AGGNDSMPAHLHVR 476
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 54.6 bits (131), Expect = 1e-09
Identities = 21/145 (14%), Positives = 32/145 (22%), Gaps = 44/145 (30%)
Query: 119 QVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPML 178
+ + + G V L C AVG P P + W E + +L
Sbjct: 17 RGSHMAGFV--QAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGAR 74
Query: 179 TIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTL 238
+ Y + + I ED+
Sbjct: 75 LDRVHIHA--------------------TYHQHAASTISIDTLVEEDT------------ 102
Query: 239 KIRSILSHQFGSYRCVAVNALGETD 263
G+Y C A N
Sbjct: 103 ----------GTYECRASNDPDRNH 117
Score = 43.1 bits (101), Expect = 1e-05
Identities = 19/126 (15%), Positives = 38/126 (30%), Gaps = 8/126 (6%)
Query: 17 EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVK---MITQTILSIHHKVVTQ 73
M F + + VG + C ++ W +
Sbjct: 17 RGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLD 76
Query: 74 NKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTST 133
+ T++ H + + + + E D G Y C+ ++ + PR+ R
Sbjct: 77 RVHIHATYHQHAASTISIDTLVEEDTGTYECRA-----SNDPDRNHLTRAPRVKWVRAQA 131
Query: 134 DVVVRE 139
V+V E
Sbjct: 132 VVLVLE 137
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 55.3 bits (133), Expect = 2e-09
Identities = 24/176 (13%), Positives = 44/176 (25%), Gaps = 53/176 (30%)
Query: 122 VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEP-YVAWRREDGKAINYNGELV------ 174
VP + + + +G VTL C+ + E W + N L
Sbjct: 1 VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVNAKF 60
Query: 175 --------------------------PPMLTIPNQ--LEGAFVSQTVELHCHTEAFPASL 206
+L + +EG Q + L CH
Sbjct: 61 EDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEG----QPLFLRCHGWRNWDVY 116
Query: 207 NY-WTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE 261
+ Y+D + + + + I + G+Y C +
Sbjct: 117 KVIY-------------YKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLD 159
Score = 55.3 bits (133), Expect = 2e-09
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 89 LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECS 148
L++ + + D G Y CQ V S+ YL+V +L ++ VV EG + L C
Sbjct: 53 LNIVNAKFEDSGEYKCQHQQVN-ESEPVYLEVFSDWLLL---QASAEVVMEGQPLFLRCH 108
Query: 149 A-VGYPEPYVAWRREDGKAINYNGELVPPMLTIPN 182
+ V + + DG+A+ Y E ++I N
Sbjct: 109 GWRNWDVYKVIYYK-DGEALKYWYE--NHNISITN 140
Score = 34.1 bits (78), Expect = 0.031
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 89 LHLRDVQETDRGWYMC--QINTVPMTSQKGYLQVVVPPRI 126
+ + + D G Y C ++ + S+ + V+ PR
Sbjct: 136 ISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPRE 175
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 53.2 bits (128), Expect = 2e-09
Identities = 19/151 (12%), Positives = 38/151 (25%), Gaps = 55/151 (36%)
Query: 120 VVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLT 179
V P I T + + + G P+P + W NG ++
Sbjct: 1 VHFAPTI----TFLESPT-SDHHWCIPFTVKGNPKPALQWFY--------NGAILNE--- 44
Query: 180 IPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLK 239
++ I ++ + H L+
Sbjct: 45 -------------------------------SKYICTKIHVTNHTEY--------HGCLQ 65
Query: 240 IRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
+ + G Y +A N G+ + I +
Sbjct: 66 LDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96
Score = 35.5 bits (82), Expect = 0.003
Identities = 8/63 (12%), Positives = 19/63 (30%), Gaps = 5/63 (7%)
Query: 69 KVVTQNKRVSITF----NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVP 123
++ ++K + + L L + + G Y N ++ +
Sbjct: 40 AILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW 99
Query: 124 PRI 126
P I
Sbjct: 100 PGI 102
Score = 26.2 bits (58), Expect = 6.1
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 5/35 (14%)
Query: 279 QIRKMSRLHMGAYLCIASN--GVVPSVSHRIMVTV 311
Q+ + ++ G Y IA N G +I
Sbjct: 65 QLDNPTHMNNGDYTLIAKNEYG---KDEKQISAHF 96
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 52.8 bits (127), Expect = 3e-09
Identities = 24/140 (17%), Positives = 38/140 (27%), Gaps = 59/140 (42%)
Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPN 182
PP IL + + + L+C A G P P ++W + +G
Sbjct: 8 PPIIL--QGPANQTLAVDGTALLKCKATGDPLPVISWLK-EGFTFPGRDP---------- 54
Query: 183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRS 242
E+G + I D+
Sbjct: 55 ------------------------RATIQEQGTLQIKNLRISDT---------------- 74
Query: 243 ILSHQFGSYRCVAVNALGET 262
G+Y CVA ++ GET
Sbjct: 75 ------GTYTCVATSSSGET 88
Score = 44.3 bits (105), Expect = 3e-06
Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 13/100 (13%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P + AN T V AL+ C ++W+K ++ R +I
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKE--------GFTFPGRDPRATIQE 60
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQV 120
L +++++ +D G Y C ++ TS L V
Sbjct: 61 QG----TLQIKNLRISDTGTYTCVATSSSGETSWSAVLDV 96
Score = 26.2 bits (58), Expect = 5.5
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 270 VNLVDGDIFQIRKMSRLHMGAYLCIASN--GVVPSVSHRIMVTV 311
+ + QI+ + G Y C+A++ G S ++ V
Sbjct: 56 ATIQEQGTLQIKNLRISDTGTYTCVATSSSG---ETSWSAVLDV 96
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 52.8 bits (127), Expect = 3e-09
Identities = 33/161 (20%), Positives = 45/161 (27%), Gaps = 59/161 (36%)
Query: 110 PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINY 169
PM + G PP L R V V G E L+C +G P P V W +
Sbjct: 2 PMKASSG--DQGSPPCFL--RFPRPVRVVSGAEAELKCVVLGEPPPVVVWEK-------- 49
Query: 170 NGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLI 229
G+ + +E+ G ++
Sbjct: 50 GGQQLAA----------------------------------SERLSFPADGAEH------ 69
Query: 230 NGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
L + + L G Y C A NA GE V V
Sbjct: 70 -------GLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTV 103
Score = 48.5 bits (116), Expect = 1e-07
Identities = 25/104 (24%), Positives = 36/104 (34%), Gaps = 11/104 (10%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P F V G EA + CVV V W K + + ++R+S
Sbjct: 14 PCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEK---------GGQQLAASERLSFPA 64
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPP 124
+ L L TD G Y+C+ N + V+ PP
Sbjct: 65 DGAEH-GLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 55.1 bits (132), Expect = 4e-09
Identities = 28/165 (16%), Positives = 51/165 (30%), Gaps = 20/165 (12%)
Query: 31 VTATVGKEALMACVV-----ENLREYKVAWVK---MITQTILSIHHKVVTQNKRVSITFN 82
+ + C + N+ + W + + Q
Sbjct: 13 QITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIV 72
Query: 83 DHRSWF-----LHLRDVQETDRGWYMCQINTVPMTSQKG-YLQVVVPPRILLDRTSTDVV 136
L L +Q + G Y C++ P+ +Q L+VV P L D V
Sbjct: 73 SPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRL---LLDQV 129
Query: 137 VREGTEVTLECSAVG-YPEP-YVAWRREDGKAINYNGELVPPMLT 179
+ E C + G YPE + W + + + E+ ++T
Sbjct: 130 GMKENEDKYMCESSGFYPEAINITWEK-QTQKFPHPIEISEDVIT 173
Score = 28.5 bits (63), Expect = 2.6
Identities = 4/52 (7%), Positives = 13/52 (25%), Gaps = 14/52 (26%)
Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEP-----YVAWRREDG 164
++++ + VT+ C+ + W +
Sbjct: 5 VEMMAGG---------TQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSL 47
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 53.3 bits (128), Expect = 5e-09
Identities = 30/173 (17%), Positives = 49/173 (28%), Gaps = 63/173 (36%)
Query: 97 TDRGWYMCQ-INTVPMTSQKGYLQVV------VPPRILLDRTSTDVVVREGTEVTLECSA 149
G IN + ++ +L+ V V P +T D+ V EG+ +C
Sbjct: 8 KASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFT--KTILDMEVVEGSAARFDCKV 65
Query: 150 VGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYW 209
GYP+P V W ++
Sbjct: 66 EGYPDPEVMWFKD----------------------------------------------- 78
Query: 210 TNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET 262
+ + ++ G +L I + Y C AVN+LGE
Sbjct: 79 ----DNPVKESRHFQIDYDEEGNC---SLTISEVCGDDDAKYTCKAVNSLGEA 124
Score = 52.9 bits (127), Expect = 8e-09
Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 10/106 (9%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P F + + ++ G A C VE + +V W K V +++ I +
Sbjct: 42 PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFK---------DDNPVKESRHFQIDY 92
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRI 126
++ + L + +V D Y C+ +N++ + L V +
Sbjct: 93 DEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKE 138
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 51.6 bits (124), Expect = 6e-09
Identities = 24/142 (16%), Positives = 41/142 (28%), Gaps = 56/142 (39%)
Query: 121 VVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTI 180
+ PPR + + ++ + EG ++ G P P V+W NG V
Sbjct: 3 MGPPRFI--QVPENMSIDEGRFCRMDFKVSGLPAPDVSWYL--------NGRTVQS---- 48
Query: 181 PNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKI 240
++ MI++ +L
Sbjct: 49 ------------------------------DDLHKMIVSEKG------------LHSLIF 66
Query: 241 RSILSHQFGSYRCVAVNALGET 262
+ + G+Y CVA N GE
Sbjct: 67 EVVRASDAGAYACVAKNRAGEA 88
Score = 46.5 bits (111), Expect = 4e-07
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 10/102 (9%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
PRF + N++ G+ M V L V+W + V + +
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLN---------GRTVQSDDLHKMIV 56
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVV 122
++ L V+ +D G Y C N + L V+
Sbjct: 57 SEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98
Score = 28.1 bits (63), Expect = 1.5
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 261 ETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASN 297
++D K+ V+ + GAY C+A N
Sbjct: 47 QSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKN 83
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 51.6 bits (124), Expect = 6e-09
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 20/69 (28%)
Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVP-- 175
LQ+ V P T + G+ + L+C AVG P P+ W + N +
Sbjct: 4 LQICVEP--------TSQKLMPGSTLVLQCVAVGSPIPHYQWFK--------NELPLTHE 47
Query: 176 --PMLTIPN 182
+ +P
Sbjct: 48 TKKLYMVPY 56
Score = 40.4 bits (95), Expect = 6e-05
Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 16/90 (17%)
Query: 175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNY-WTNEKGDMIITGDDYEDSRLINGYS 233
+ + + T+ L C P +Y W K ++ +T +
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPI-PHYQWF--KNELPLTHET----------- 48
Query: 234 CHMTLKIRSILSHQFGSYRCVAVNALGETD 263
+ + G+Y C N D
Sbjct: 49 -KKLYMVPYVDLEHQGTYWCHVYNDRDSQD 77
Score = 30.4 bits (69), Expect = 0.18
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 277 IFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTV 311
++ + + H G Y C N S ++ + +
Sbjct: 51 LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIII 85
Score = 28.5 bits (64), Expect = 0.79
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 89 LHLRDVQETDRGWYMCQI-NTV-PMTSQKGYLQVVVPPRI 126
+ V +G Y C + N S+K + + +
Sbjct: 52 YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 91
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 51.1 bits (123), Expect = 9e-09
Identities = 24/149 (16%), Positives = 38/149 (25%), Gaps = 56/149 (37%)
Query: 122 VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIP 181
PP + D VREG +V + G P+P V+W R + + + +
Sbjct: 4 APPTFK--VSLMDQSVREGQDVIMSIRVQGEPKPVVSWLR-NRQPVRPDQ---------- 50
Query: 182 NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIR 241
+ L+I
Sbjct: 51 --------------------------------RRFAEEAEGGLCR-----------LRIL 67
Query: 242 SILSHQFGSYRCVAVNALGETDGFIKVYV 270
+ G Y C AVN G ++ V
Sbjct: 68 AAERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 46.5 bits (111), Expect = 4e-07
Identities = 17/100 (17%), Positives = 41/100 (41%), Gaps = 10/100 (10%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P F + + + G++ +M+ V+ + V+W++ + + V ++R
Sbjct: 6 PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLR---------NRQPVRPDQRRFAEE 56
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQV 120
+ L + + D G+Y C+ +N + L+V
Sbjct: 57 AEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 51.4 bits (123), Expect = 1e-08
Identities = 22/153 (14%), Positives = 33/153 (21%), Gaps = 56/153 (36%)
Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPM 177
L V PPR++ E +E G P P + W NG+ +
Sbjct: 3 LTVYYPPRVVSLEEPE-----LRLEHCIEFVVRGNPPPTLHWLH--------NGQPLRE- 48
Query: 178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMT 237
G
Sbjct: 49 ------------------------------------------SKIIHVEYYQEGEISEGC 66
Query: 238 LKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
L + G+Y +A N LG + I +
Sbjct: 67 LLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF 99
Score = 35.6 bits (82), Expect = 0.005
Identities = 14/117 (11%), Positives = 34/117 (29%), Gaps = 16/117 (13%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
PR + E + VV + W+ + + + ++K + + +
Sbjct: 9 PRVVSLE---EPELRLEHCIEFVVRGNPPPTLHWLH---------NGQPLRESKIIHVEY 56
Query: 82 ---NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTD 134
+ L + G Y N + +Q + P + + + T
Sbjct: 57 YQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTP 113
Score = 26.3 bits (58), Expect = 8.0
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 5/35 (14%)
Query: 279 QIRKMSRLHMGAYLCIASN--GVVPSVSHRIMVTV 311
K + + G Y IA N G + + I
Sbjct: 68 LFNKPTHYNNGNYTLIAKNPLG---TANQTINGHF 99
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 50.9 bits (122), Expect = 1e-08
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 6/63 (9%)
Query: 120 VVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLT 179
+ +++ V G VTL C P P + W + DG + P+L
Sbjct: 7 GLEEVQLV--VEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMK-DGVPLPLPPS---PVLI 60
Query: 180 IPN 182
+P
Sbjct: 61 LPE 63
Score = 36.6 bits (85), Expect = 0.001
Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 14/92 (15%)
Query: 172 ELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLING 231
L L + + TV L C A P+ +W + + +
Sbjct: 7 GLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSP--------- 57
Query: 232 YSCHMTLKIRSILSHQFGSYRCVAVNALGETD 263
L + I G+Y CVA ++
Sbjct: 58 -----VLILPEIGPQDQGTYSCVATHSSHGPQ 84
Score = 32.0 bits (73), Expect = 0.052
Identities = 14/105 (13%), Positives = 31/105 (29%), Gaps = 22/105 (20%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
+ G + C V ++ W+K + +
Sbjct: 11 VQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMK---------------DGVPLPLPP 55
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQ-INTV--PMTSQKGYLQVVVP 123
+ L L ++ D+G Y C ++ P S+ + ++ P
Sbjct: 56 SPV----LILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
Score = 30.5 bits (69), Expect = 0.18
Identities = 6/34 (17%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 279 QIRKMSRLHMGAYLCIASNGV-VPSVSHRIMVTV 311
+ ++ G Y C+A++ P S + +++
Sbjct: 60 ILPEIGPQDQGTYSCVATHSSHGPQESRAVSISI 93
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 52.9 bits (126), Expect = 2e-08
Identities = 27/160 (16%), Positives = 43/160 (26%), Gaps = 27/160 (16%)
Query: 29 ANVTATVGKEALMACVVE-------NLREYKVAWVKMITQTILSIHHKVVTQNK------ 75
+VT G L+ C + V W + I V T N
Sbjct: 8 KSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFR--DGEIPYYAEVVATNNPDRRVKP 65
Query: 76 ----RVSITFNDHRSWF-LHLRDVQETDRGWYMCQINTVP---MTSQKGYLQVVVPPRIL 127
R + + + L + D + D G Y ++ + Q+ L + V I
Sbjct: 66 ETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIE 125
Query: 128 LDRTSTDVVVREGTEVTLECS----AVGYPEPYVAWRRED 163
+ G L CS P +W
Sbjct: 126 KPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNA 165
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 50.8 bits (122), Expect = 2e-08
Identities = 25/149 (16%), Positives = 46/149 (30%), Gaps = 56/149 (37%)
Query: 122 VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIP 181
P L + D+ V+EG ++C G P P ++W+ +G+ V P
Sbjct: 8 FRPHFL--QAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQL--------DGKPVRP----- 52
Query: 182 NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIR 241
+ M++ + +L I
Sbjct: 53 -----------------------------DSAHKMLVRENG------------VHSLIIE 71
Query: 242 SILSHQFGSYRCVAVNALGETDGFIKVYV 270
+ S G Y C+A N G+ +++ V
Sbjct: 72 PVTSRDAGIYTCIATNRAGQNSFSLELVV 100
Score = 49.3 bits (118), Expect = 6e-08
Identities = 22/105 (20%), Positives = 32/105 (30%), Gaps = 10/105 (9%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P F + ++T GK M C V L ++W K V + +
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQL---------DGKPVRPDSAHKMLV 60
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPR 125
++ L + V D G Y C N S L V
Sbjct: 61 RENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKES 105
Score = 27.7 bits (62), Expect = 1.9
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 5/56 (8%)
Query: 261 ETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASN--GVVPSVSHRIMVTVHCK 314
D K+ V I ++ G Y CIA+N G S + + V K
Sbjct: 51 RPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAG---QNSFSLELVVAAK 103
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 50.4 bits (121), Expect = 2e-08
Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 13/103 (12%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
+ P+ + T +GKE + C + W K + V ++ R+ +
Sbjct: 8 LKILTPLTDQTVNLGKEICLKCEIS--ENIPGKWTK---------NGLPVQESDRLKVVQ 56
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPP 124
L + + D G Y+ + + V+ P
Sbjct: 57 KGRIH-KLVIANALTEDEGDYVF-APDAYNVTLPAKVHVISGP 97
Score = 38.1 bits (89), Expect = 4e-04
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
+IL TD V G E+ L+C W + +G +
Sbjct: 7 GLKIL--TPLTDQTVNLGKEICLKCEISENIP--GKWTK-NGLPV 46
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 49.6 bits (119), Expect = 4e-08
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 120 VVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNG 171
+ P I+ D V + A G P P W + DGKAI G
Sbjct: 3 ISSKPVIV--TGLQDTTVSSDSVAKFAVKATGEPRPTAIWTK-DGKAITQGG 51
Score = 44.2 bits (105), Expect = 3e-06
Identities = 18/100 (18%), Positives = 30/100 (30%), Gaps = 11/100 (11%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P + + T + A A W K K +TQ + ++
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTK---------DGKAITQGGKYKLSE 57
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQV 120
+ FL + +D G Y C N+ S L +
Sbjct: 58 DKGGF-FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 49.7 bits (119), Expect = 5e-08
Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 15/103 (14%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
RF + + A+ G A + C + + V W K + + R S+
Sbjct: 9 ARFTQDLKTKEASEGATATLQCELS--KVAPVEWKK---------GPETLRDGGRYSLKQ 57
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPP 124
+ R L + D+ D G Y C ++ L V P
Sbjct: 58 DGTRC-ELQIHDLSVADAGEYSCMCGQERTSAT---LTVRALP 96
Score = 36.6 bits (85), Expect = 0.002
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
P R + EG TL+C V W++ + +
Sbjct: 8 PARFT--QDLKTKEASEGATATLQCEL--SKVAPVEWKK-GPETL 47
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 49.4 bits (118), Expect = 5e-08
Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 14/111 (12%)
Query: 14 TKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQ 73
+ + + V A + ++ C + +V W K + V +
Sbjct: 6 SGTDVSSWIVYPSGKVYVAAVRLERVVLTCELCR-PWAEVRWTK---------DGEEVVE 55
Query: 74 NKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPP 124
+ + + D L L VQ D G Y+C+I+ + + V PP
Sbjct: 56 SPALLLQKEDTVR-RLVLPAVQLEDSGEYLCEIDDESASFT---VTVTEPP 102
Score = 44.4 bits (105), Expect = 3e-06
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 121 VVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
V I+ V V L C + P V W + DG+ +
Sbjct: 9 DVSSWIVYPSGKVYVAAVRLERVVLTCE-LCRPWAEVRWTK-DGEEV 53
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 49.7 bits (118), Expect = 6e-08
Identities = 15/105 (14%), Positives = 34/105 (32%), Gaps = 1/105 (0%)
Query: 26 EPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHR 85
P + +VG++ ++ C + + + V K S +
Sbjct: 13 SPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF 72
Query: 86 SWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLD 129
L + V +D+G Y C + + +++V P +
Sbjct: 73 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFG 117
Score = 42.8 bits (100), Expect = 2e-05
Identities = 19/140 (13%), Positives = 32/140 (22%), Gaps = 45/140 (32%)
Query: 131 TSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVS 190
S + + G ++ L C+A + + E Y + L+ S
Sbjct: 14 PSHGIELSVGEKLVLNCTARTELNVGIDFNWE------YPSSKHQHKKLVNRDLKTQSGS 67
Query: 191 QTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGS 250
+ + TL I + G
Sbjct: 68 EMKKFLS---------------------------------------TLTIDGVTRSDQGL 88
Query: 251 YRCVAVNALGETDGFIKVYV 270
Y C A + L V V
Sbjct: 89 YTCAASSGLMTKKNSTFVRV 108
Score = 29.7 bits (66), Expect = 0.55
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 280 IRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
I ++R G Y C AS+G + + + V VH
Sbjct: 78 IDGVTRSDQGLYTCAASSG-LMTKKNSTFVRVH 109
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 48.9 bits (117), Expect = 7e-08
Identities = 24/140 (17%), Positives = 35/140 (25%), Gaps = 55/140 (39%)
Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPN 182
P + EG VT C G P+P + W + DGK I+
Sbjct: 8 APFFE--MKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFK-DGKQISPK------------ 52
Query: 183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRS 242
D Y R ++G +L +
Sbjct: 53 -------------------------------------SDHYTIQRDLDGTC---SLHTTA 72
Query: 243 ILSHQFGSYRCVAVNALGET 262
G+Y +A N G
Sbjct: 73 STLDDDGNYTIMAANPQGRI 92
Score = 45.0 bits (107), Expect = 2e-06
Identities = 19/105 (18%), Positives = 30/105 (28%), Gaps = 9/105 (8%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P F + + G C V + K+ W K ++ ++ +I
Sbjct: 9 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKD--------GKQISPKSDHYTIQR 60
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPR 125
+ + LH D G Y N S G L V
Sbjct: 61 DLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNS 105
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 48.8 bits (117), Expect = 7e-08
Identities = 20/147 (13%), Positives = 30/147 (20%), Gaps = 57/147 (38%)
Query: 116 GYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVP 175
G + PRI V G + P V W +G + +
Sbjct: 1 GPFTLDHAPRIT--LRMRSHRVPCGQNTRFILNVQSKPTAEVKWYH-NGVELQESS---- 53
Query: 176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCH 235
++
Sbjct: 54 -------------------------------KIHYTNTSGVL------------------ 64
Query: 236 MTLKIRSILSHQFGSYRCVAVNALGET 262
TL+I + G+YR V N GE
Sbjct: 65 -TLEILDCHTDDSGTYRAVCTNYKGEA 90
Score = 42.7 bits (101), Expect = 1e-05
Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 10/84 (11%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
PR + + G+ V++ +V W + + ++ ++ T
Sbjct: 9 PRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYH---------NGVELQESSKIHYTN 59
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQ 105
L + D D G Y
Sbjct: 60 TSGVL-TLEILDCHTDDSGTYRAV 82
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 49.2 bits (117), Expect = 8e-08
Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 5/109 (4%)
Query: 22 PRFAEPVANVTATVGKEALMACVVE---NLREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
F E T VG++ V+ LR+ + W K + S K + +
Sbjct: 8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFE 67
Query: 79 ITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRI 126
+ ++ + + ++ G Y C++ S L+V
Sbjct: 68 RHSRVY-TFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGT 115
Score = 39.6 bits (92), Expect = 2e-04
Identities = 12/131 (9%), Positives = 30/131 (22%), Gaps = 49/131 (37%)
Query: 134 DVVVREGTEVTLECSAVGYP---EPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVS 190
V+ G ++T +P + W + +
Sbjct: 16 GGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDL----------------------- 52
Query: 191 QTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGS 250
++ G + + +E + + ++I + G+
Sbjct: 53 -------------------ASKAGKHLQLKETFERHSRVYTF----EMQIIKAKDNFAGN 89
Query: 251 YRCVAVNALGE 261
YRC
Sbjct: 90 YRCEVTYKDKF 100
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 49.9 bits (119), Expect = 1e-07
Identities = 18/145 (12%), Positives = 46/145 (31%), Gaps = 10/145 (6%)
Query: 30 NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFL 89
+ V N+ +V W K + + + + + + D S L
Sbjct: 4 QIYGVVYGNVTFHVP-SNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62
Query: 90 HLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSA 149
+ ++ +D Y + + + K +L V+ S ++ E + TL C
Sbjct: 63 TIYNLTSSDEDEYEMESPNI-TDTMKFFLYVLEMV-------SKPMIYWECSNATLTCEV 114
Query: 150 VGYPEPYVAWRREDGKAINYNGELV 174
+ + + + + + +
Sbjct: 115 LEGTDVELKLYQ-GKEHLRSLRQKT 138
Score = 26.8 bits (59), Expect = 7.3
Identities = 19/173 (10%), Positives = 38/173 (21%), Gaps = 51/173 (29%)
Query: 132 STDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQ 191
S + VT P V W+++ K
Sbjct: 2 SQQIYGVVYGNVTFHVP-SNVPLKEVLWKKQKDKVAEL---------------------- 38
Query: 192 TVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSY 251
+ +++ ++ S +L I ++ S Y
Sbjct: 39 ---------------------ENSEFRAFSSFKNRVYLDTVSG--SLTIYNLTSSDEDEY 75
Query: 252 RCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVS 304
+ N F+ V + I+ + L C G +
Sbjct: 76 EMESPNITDTMKFFLYVLEMVSKPMIYWECSNATLT-----CEVLEGTDVELK 123
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 48.2 bits (115), Expect = 1e-07
Identities = 15/106 (14%), Positives = 29/106 (27%), Gaps = 14/106 (13%)
Query: 22 PRFAEPVANVTATVGKEALMACVV-ENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
+ + + G+ CV+ W K V + R T
Sbjct: 9 VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTV---------GGKTVGSSSRFQAT 59
Query: 81 FNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRI 126
+ L +R+ +D G + + + + K L V
Sbjct: 60 RQGRKY-ILVVREAAPSDAGEVVFSVRGL---TSKASLIVRERSGP 101
Score = 38.5 bits (90), Expect = 3e-04
Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 4/46 (8%)
Query: 123 PPRILLDRTSTDVVVREGTEVTLECS-AVGYPEPYVAWRREDGKAI 167
I + + V EG + EC + W GK +
Sbjct: 8 HVGIT--KRLKTMEVLEGESCSFECVLSHESASDPAMWTV-GGKTV 50
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 47.7 bits (114), Expect = 2e-07
Identities = 21/140 (15%), Positives = 30/140 (21%), Gaps = 56/140 (40%)
Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPN 182
P+I V +G++ VG P+P W +
Sbjct: 5 APKIF--ERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKN-------------------- 42
Query: 183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRS 242
G I D + L IR
Sbjct: 43 -------------------------------GVKIERSDRIYWYWPEDNVC---ELVIRD 68
Query: 243 ILSHQFGSYRCVAVNALGET 262
+ S A+N GET
Sbjct: 69 VTGEDSASIMVKAINIAGET 88
Score = 45.3 bits (108), Expect = 1e-06
Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 10/100 (10%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
P+ E + + T G +A V + + W K + + ++ R+ +
Sbjct: 6 PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYK---------NGVKIERSDRIYWYW 56
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQV 120
+ L +RDV D M + IN TS +L V
Sbjct: 57 PEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 47.7 bits (114), Expect = 2e-07
Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 15/103 (14%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
+F E + N AT G A++ C + + V W K H+ + R S+
Sbjct: 20 IKFTEGLRNEEATEGATAVLRCELS--KMAPVEWWK---------GHETLRDGDRHSLRQ 68
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPP 124
D L +R + D G Y+C L V P
Sbjct: 69 -DGARCELQIRGLVAEDAGEYLCMCGKE---RTSAMLTVRAMP 107
Score = 38.9 bits (91), Expect = 3e-04
Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 6/52 (11%)
Query: 117 YLQVV-VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
L V +P + + EG L C V W + + +
Sbjct: 12 MLTVRALPIKFT--EGLRNEEATEGATAVLRCELSKMAP--VEWWK-GHETL 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 50.5 bits (121), Expect = 3e-07
Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 7/97 (7%)
Query: 175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSC 234
P ++ P L + EL C T P S W G ++ + ++N
Sbjct: 353 PFIMDAPRDLN-ISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDG-- 407
Query: 235 HMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN 271
TL +L G Y C+ N G ++ + V+
Sbjct: 408 --TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVS 442
Score = 40.1 bits (94), Expect = 7e-04
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 15/110 (13%)
Query: 16 CEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNK 75
C P + ++ + G+ A + C V W+ T+LS +++
Sbjct: 350 CSAPFIMDAPR---DLNISEGRMAELKCRTP--PMSSVKWLL-PNGTVLS----HASRHP 399
Query: 76 RVSITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPP 124
R+S+ + L+ V +D G Y C + N ++ YL V
Sbjct: 400 RISVLNDGT----LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAG 445
Score = 38.6 bits (90), Expect = 0.002
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYN 170
P I+ D+ + EG L+C P V W +G +++
Sbjct: 352 APFIM--DAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHA 395
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.0 bits (121), Expect = 3e-07
Identities = 56/371 (15%), Positives = 107/371 (28%), Gaps = 129/371 (34%)
Query: 26 EPVANVT----ATVGKEALMACV-----VENLREYKVAWVKM--------ITQTILSIHH 68
P NV GK + V V+ ++K+ W+ + + + + + +
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 69 KVVT-------QNKRVSITFNDHRSWFLH-------------LRDVQET------DRGWY 102
++ + + + + ++ L +VQ +
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-- 265
Query: 103 MCQINTVPMTSQKG---YLQVVVPPRILLDRTSTDVVVREGTEV---TLECSAVGYPE-- 154
C+I + T K +L I LD S + E + L+C P
Sbjct: 266 -CKI--LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 155 ----PYV----AWRREDGKAI--NYNGELVPPMLTI---------PNQLEGAFVSQTVEL 195
P A DG A N+ + TI P + F +V
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-- 380
Query: 196 HCHTEAFPASLN--------YWTNEKGD--MIITGDDYEDSRLING---------YSCHM 236
FP S + W + M++ + L+ S ++
Sbjct: 381 ------FPPSAHIPTILLSLIWFDVIKSDVMVVV-NKLHKYSLVEKQPKESTISIPSIYL 433
Query: 237 TLKI---------RSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLH 287
LK+ RSI+ H + + ++D I Y +D + H
Sbjct: 434 ELKVKLENEYALHRSIVDH-YNIPKTF------DSDDLIPPY---LDQYFYS-------H 476
Query: 288 MGAYLCIASNG 298
+G +L +
Sbjct: 477 IGHHLKNIEHP 487
Score = 32.9 bits (74), Expect = 0.15
Identities = 40/339 (11%), Positives = 110/339 (32%), Gaps = 97/339 (28%)
Query: 12 FKTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVV 71
F + D+ + + ++ +M+ + ++ W ++
Sbjct: 29 FVDNFDCKDVQDMPKSI--LSKEEIDHIIMSKDAVS-GTLRLFWT-------------LL 72
Query: 72 TQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV---PMTSQKGYL---------- 118
++ + + F + +V + + M I T P + Y+
Sbjct: 73 SKQEEMVQKF---------VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 119 QVVVP---PRI---------LL-DRTSTDVVVREG------TEVTLE-CSAVGYPEPY-- 156
QV R+ LL R + +V++ +G T V L+ C +
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLI-DGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 157 -VAWRREDGKAINYN-----GELVPPMLTI-----PNQLEGAFVSQTVELHCHTEAFPAS 205
+ W +N ++ + + PN + S ++L H
Sbjct: 183 KIFW-------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH-SIQAEL 234
Query: 206 LNYWTNE--KGDMIITGDDYEDSRLINGY--SCH--MTLKIRSI---LSHQFGSYRCVAV 256
++ + +++ + ++++ N + SC +T + + + LS ++ +
Sbjct: 235 RRLLKSKPYENCLLVL-LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 257 NALGETDG-----FIKVYVNLVDGDI-FQIRKMSRLHMG 289
+++ T +K Y++ D+ ++ + +
Sbjct: 294 HSMTLTPDEVKSLLLK-YLDCRPQDLPREVLTTNPRRLS 331
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 46.6 bits (111), Expect = 4e-07
Identities = 16/103 (15%), Positives = 29/103 (28%), Gaps = 14/103 (13%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
F E + N+ A+ C E+ V W K + + + +
Sbjct: 9 NCFTEELTNLQVEEKGTAVFTCKTEH-PAATVTWRK---------GLLELRASGKHQPSQ 58
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPP 124
L + +++ D Y C I + L V
Sbjct: 59 EGLTL-RLTISALEKADSDTYTCDIGQA---QSRAQLLVQGRR 97
Score = 40.0 bits (94), Expect = 1e-04
Identities = 8/45 (17%), Positives = 13/45 (28%), Gaps = 4/45 (8%)
Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
T++ V E C +P V WR+ +
Sbjct: 8 ANCFT--EELTNLQVEEKGTAVFTCK-TEHPAATVTWRK-GLLEL 48
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 47.2 bits (112), Expect = 4e-07
Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 9/105 (8%)
Query: 24 FAEPVANVTATVGKEALMACVVENLREYK-VAWVKMITQTILSIHHKVVTQNK-----RV 77
+ ++T G + YK + W Q I+ + + RV
Sbjct: 7 GQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRV 66
Query: 78 SITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV 122
+ D +S L++ VQ+ D Y+ ++ Q+ +++ V
Sbjct: 67 RL---DPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQV 108
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 46.7 bits (111), Expect = 4e-07
Identities = 22/150 (14%), Positives = 34/150 (22%), Gaps = 56/150 (37%)
Query: 123 PPRIL--LDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTI 180
P V V C A G P P + W + NG+
Sbjct: 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK--------NGKEFKQ---- 51
Query: 181 PNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKI 240
++ N H +L +
Sbjct: 52 ---------------------------------------EHRIGGYKVRNQ---HWSLIM 69
Query: 241 RSILSHQFGSYRCVAVNALGETDGFIKVYV 270
S++ G+Y CV N G + + V
Sbjct: 70 ESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 41.3 bits (97), Expect = 3e-05
Identities = 18/105 (17%), Positives = 30/105 (28%), Gaps = 14/105 (13%)
Query: 22 PRFAEPV----ANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRV 77
P + C + W+K + K Q R+
Sbjct: 5 PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK---------NGKEFKQEHRI 55
Query: 78 SITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVV 121
++ W L + V +D+G Y C N + +L VV
Sbjct: 56 GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 46.2 bits (110), Expect = 7e-07
Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 16/108 (14%)
Query: 17 EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKR 76
P RF E + ++ G A + CV+ ++ V W + V+ +
Sbjct: 6 SGP--VRFQEALKDLEVLEGGAATLRCVLSSVAA-PVKWCY---------GNNVLRPGDK 53
Query: 77 VSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPP 124
S+ L +R+++ D G Y C + L V P
Sbjct: 54 YSLRQEGAMLE-LVVRNLRPQDSGRYSCSFGDQ---TTSATLTVTALP 97
Score = 40.4 bits (95), Expect = 6e-05
Identities = 12/45 (26%), Positives = 14/45 (31%), Gaps = 4/45 (8%)
Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
P R D+ V EG TL C P V W +
Sbjct: 8 PVRFQ--EALKDLEVLEGGAATLRCVLSSVAAP-VKWCY-GNNVL 48
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 46.1 bits (109), Expect = 7e-07
Identities = 21/104 (20%), Positives = 29/104 (27%), Gaps = 5/104 (4%)
Query: 22 PRFAEPVANVTATVGKEALMACVVE---NLREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
F + TVG + V L+ V W K LS Q
Sbjct: 5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKG-KWVDLSSKVGQHLQLHDSY 63
Query: 79 ITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVV 121
+ + LH+ D Q G Y C++ L V
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
Score = 35.4 bits (81), Expect = 0.004
Identities = 18/131 (13%), Positives = 29/131 (22%), Gaps = 49/131 (37%)
Query: 134 DVVVREGTEVTLECSAVGYP---EPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVS 190
D V G +T G P V W + +
Sbjct: 13 DGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDL----------------------- 49
Query: 191 QTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGS 250
+++ G + D Y+ + + + L I GS
Sbjct: 50 -------------------SSKVGQHLQLHDSYDRASKVYLF----ELHITDAQPAFTGS 86
Query: 251 YRCVAVNALGE 261
YRC
Sbjct: 87 YRCEVSTKDKF 97
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 46.3 bits (109), Expect = 9e-07
Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 5/106 (4%)
Query: 22 PRFAEPVANVTATVGKEALMACVVEN---LREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
F + +V+ GK+A++ V + + W K + S + + +
Sbjct: 13 GVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHN 72
Query: 79 ITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVP 123
N + + LH+ V DRG+Y ++ S + V P
Sbjct: 73 SASNVY-TVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAP 117
Score = 26.7 bits (58), Expect = 4.9
Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 4/37 (10%)
Query: 236 MTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNL 272
+ L I ++ G YR D N+
Sbjct: 80 VELHIGKVVLGDRGYYRLEVKAK----DTCDSCGFNI 112
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 45.4 bits (108), Expect = 1e-06
Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 14/103 (13%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
+P+ + G++ + C + V W+K K + ++++ +
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGT-PVHWLK---------DRKAIRKSQKYDVVC 58
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPP 124
+ L +R D G Y C++ T+ L V
Sbjct: 59 EGTMA-MLVIRGASLKDAGEYTCEVEASKSTAS---LHVEEKA 97
Score = 41.5 bits (98), Expect = 3e-05
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
P I+ + D V G +V L C P V W + D KAI
Sbjct: 8 PAAII--KPLEDQWVAPGEDVELRCELSRAGTP-VHWLK-DRKAI 48
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 46.1 bits (109), Expect = 1e-06
Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 11/107 (10%)
Query: 29 ANVTATVGKEALMACVVE-NLREYKVAWVK------MITQTILSIHHKVVTQNK--RVSI 79
V VG + C W + T++ + VT K R ++
Sbjct: 5 VEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNL 64
Query: 80 TFNDHRSWF-LHLRDVQETDRGWYMCQINTV-PMTSQKGYLQVVVPP 124
+ L + + E+D G Y C++ QK + V P
Sbjct: 65 KGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKP 111
Score = 26.8 bits (59), Expect = 5.3
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 133 TDVVVREGTEVTLECS-AVGYPEPYVAWRREDGKAINYNGELV 174
+V G VTL C+ + W R + L+
Sbjct: 5 VEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLI 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 48.6 bits (116), Expect = 1e-06
Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 11/100 (11%)
Query: 175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSR---LING 231
P++ P EL C + W G ++ R L +G
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTH--GAYKVRIAVLSDG 397
Query: 232 YSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN 271
TL ++ G Y C+ N++G T + V
Sbjct: 398 -----TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVT 432
Score = 37.0 bits (86), Expect = 0.006
Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 15/114 (13%)
Query: 16 CEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNK 75
C P + ++ T G A + C V+W+ T + H
Sbjct: 339 CYAPVIVEPPA---DLNVTEGMAAELKCRAST-SLTSVSWI---TPNGTVMTHG--AYKV 389
Query: 76 RVSITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVV-VPPRIL 127
R+++ + L+ +V D G Y C + N+V T+ L V
Sbjct: 390 RIAVLSDG----TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHHHHH 439
Score = 28.6 bits (64), Expect = 2.7
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 269 YVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTV 311
L DG + ++ G Y C+ SN V + + + V
Sbjct: 391 IAVLSDGTL-NFTNVTVQDTGMYTCMVSNSVG-NTTASATLNV 431
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 47.2 bits (111), Expect = 1e-06
Identities = 35/195 (17%), Positives = 56/195 (28%), Gaps = 34/195 (17%)
Query: 79 ITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVR 138
I F +L + RG Y C+ + ++ LQV D
Sbjct: 41 IGFLTEDKKKWNLGSNAKDPRGMYQCKGSQ----NKSKPLQVYYRMGSADDAKKDAAKKD 96
Query: 139 EGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCH 198
+ + + E + + TV L C
Sbjct: 97 DAKKDDAKKDGSDGNEEMGGIT--------------------QTPYKVSISGTTVILTC- 135
Query: 199 TEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNA 258
+P S W + D I GD+ D + I H++LK S L G Y C +
Sbjct: 136 -PQYPGSEILW--QHNDKNIGGDE--DDKNIGSDEDHLSLKEFSELEQS-GYYVCYPRGS 189
Query: 259 LGETDG---FIKVYV 270
E +++ V
Sbjct: 190 KPEDANFYLYLRARV 204
Score = 30.2 bits (67), Expect = 0.71
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 136 VVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGE 172
+E V L C + W + DGK I + E
Sbjct: 14 DYQEDGSVLLTC---DAEAKNITWFK-DGKMIGFLTE 46
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 47.9 bits (114), Expect = 2e-06
Identities = 11/81 (13%), Positives = 28/81 (34%), Gaps = 6/81 (7%)
Query: 191 QTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGS 250
T+ + C T+ + + + + +++ + NG L + + G
Sbjct: 262 DTLTIRCDTKQQGMTKVWVSP-SNEQVLSQGSNGSVSVRNG-----DLFFKKVQVEDGGV 315
Query: 251 YRCVAVNALGETDGFIKVYVN 271
Y C A+ +++ V
Sbjct: 316 YTCYAMGETFNETLSVELKVY 336
Score = 32.5 bits (74), Expect = 0.18
Identities = 23/141 (16%), Positives = 40/141 (28%), Gaps = 32/141 (22%)
Query: 16 CEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNK 75
C + + A +G + C + KV + +V++Q
Sbjct: 248 CSEYKESAW-------EAHLGDTLTIRCDTKQQGMTKVWVSPS--------NEQVLSQGS 292
Query: 76 RVSITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTD 134
S++ + L + VQ D G Y C + L+V
Sbjct: 293 NGSVSVRNGD---LFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFT---------- 339
Query: 135 VVVREGTEVTLECSAVGYPEP 155
G TL +A + P
Sbjct: 340 ---LHGHHDTLNAAADPWSHP 357
Score = 30.2 bits (68), Expect = 0.75
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 269 YVNLVDGDIFQIRKMSRLHMGAYLCIASN--GVVPSVSHRIMVTVH 312
V++ +GD+F +K+ G Y C A + + + + V+
Sbjct: 295 SVSVRNGDLF-FKKVQVEDGGVYTCYAMGETF---NETLSVELKVY 336
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 45.1 bits (107), Expect = 2e-06
Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 12/105 (11%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
+ +A++T ++A+ C V + + W K + V +KR++I+
Sbjct: 9 LEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYK---------NGVEVRPSKRITISH 58
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRI 126
R L + DV+ D G Y + S L +
Sbjct: 59 -VGRFHKLVIDDVRPEDEGDYTFVPDGY-ALSLSAKLNFLEIKVS 101
Score = 37.4 bits (87), Expect = 7e-04
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
+L + D+ V+ + +C V + W + +G +
Sbjct: 8 QLEVL--QDIADLTVKAAEQAVFKCE-VSDEKVTGKWYK-NGVEV 48
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 44.6 bits (106), Expect = 2e-06
Identities = 12/88 (13%), Positives = 23/88 (26%), Gaps = 11/88 (12%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
+P+ V VG+ A + + W + + + I
Sbjct: 6 IEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKL---------KGQPLAASPDCEIIE 55
Query: 82 NDHRSWFLHLRDVQETDRGWYMCQINTV 109
+ + L L + Q G Q
Sbjct: 56 DGKKH-ILILHNCQLGMTGEVSFQAANT 82
Score = 39.6 bits (93), Expect = 1e-04
Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
+ + V V G E + P+ + W+ G+ +
Sbjct: 5 LIEVE--KPLYGVEVFVGETAHFEIE-LSEPDVHGQWKL-KGQPL 45
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 44.6 bits (106), Expect = 2e-06
Identities = 21/138 (15%), Positives = 33/138 (23%), Gaps = 56/138 (40%)
Query: 134 DVVVREGTEVTLECSAVGYPEPY-VAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQT 192
V EG V C Y + V W + +
Sbjct: 10 HAVGEEGGHVKYVCKIENYDQSTQVTWYF-GVRQL------------------------- 43
Query: 193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYR 252
S Y + + L ++ I G+YR
Sbjct: 44 ----------ENSEKYEITYEDGV-------------------AILYVKDITKLDDGTYR 74
Query: 253 CVAVNALGETDGFIKVYV 270
C VN GE + +++V
Sbjct: 75 CKVVNDYGEDSSYAELFV 92
Score = 43.5 bits (103), Expect = 5e-06
Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 12/101 (11%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENL-REYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
+ + + G C +EN + +V W + + +++ IT
Sbjct: 2 AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYF---------GVRQLENSEKYEIT 52
Query: 81 FNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQV 120
+ D + L+++D+ + D G Y C+ +N S L V
Sbjct: 53 YEDGVA-ILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 44.3 bits (105), Expect = 3e-06
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 14/104 (13%)
Query: 18 KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRV 77
K + F++ +V G A+ E KV W + ++ + +
Sbjct: 5 KKPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQR---------GGSDISASNKY 54
Query: 78 SITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVV 121
+ R L +R+V D+G Y + + K L+V+
Sbjct: 55 GLATEGTRHT-LTVREVGPADQGSYAVIAGS---SKVKFDLKVI 94
Score = 37.7 bits (88), Expect = 5e-04
Identities = 10/47 (21%), Positives = 13/47 (27%), Gaps = 2/47 (4%)
Query: 121 VVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
P + V V G+ E V W+R G I
Sbjct: 4 GKKPVSAFSKKPRSVEVAAGSPAVFEAE-TERAGVKVRWQR-GGSDI 48
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 44.6 bits (105), Expect = 3e-06
Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 25/119 (21%)
Query: 29 ANVTATVGKEALMACVV----ENLREYKVAWVKMI---TQTILSIHHKVVTQN------- 74
V +G + C + L V W + ++ H + +
Sbjct: 10 PEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPG 69
Query: 75 -KRVSITFNDHRSWF----------LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV 122
+R+S + L L + D G Y C+ T P S +G + V
Sbjct: 70 SERLSFVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 43.9 bits (104), Expect = 4e-06
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
P IL + + V L C + + W + DG+ +
Sbjct: 8 PVHILSPQDKVSLTFTTSERVVLTCE-LSRVDFPATWYK-DGQKV 50
Score = 42.0 bits (99), Expect = 2e-05
Identities = 16/108 (14%), Positives = 39/108 (36%), Gaps = 14/108 (12%)
Query: 17 EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKR 76
P + ++T T + ++ C + + ++ W K + V +++
Sbjct: 6 SGPVHILSPQDKVSLTFTTSERVVLTCELSRV-DFPATWYK---------DGQKVEESEL 55
Query: 77 VSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPP 124
+ + + + L L + + D G + C+ V S + V P
Sbjct: 56 LVVKMDGRKH-RLILPEAKVQDSGEFECRTEGV---SAFFGVTVQDPS 99
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 44.5 bits (105), Expect = 4e-06
Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 14/115 (12%)
Query: 27 PVANVTATVGKEALMACVVE---NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND 83
P + A VG EA + C + N +V W + ++ ++ Q+ + +
Sbjct: 12 PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRG 71
Query: 84 HRSWF----------LHLRDVQETDRGWYMCQINTVPMTSQKG-YLQVVVPPRIL 127
L +++V+ +D G Y C + L+V P +
Sbjct: 72 RTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWI 126
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 43.5 bits (102), Expect = 6e-06
Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 2/107 (1%)
Query: 16 CEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNK 75
C+ P+ +A G + C + + + + L +
Sbjct: 5 CDDFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHL 64
Query: 76 RVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV--PMTSQKGYLQV 120
R + L LR+V+ T G Y C I+ S L +
Sbjct: 65 RAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 36.6 bits (84), Expect = 0.002
Identities = 15/97 (15%), Positives = 34/97 (35%), Gaps = 5/97 (5%)
Query: 171 GELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLIN 230
+ P +T+ + + A V C + S + + + + E+ +
Sbjct: 6 DDFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLR 65
Query: 231 GYSCHM-----TLKIRSILSHQFGSYRCVAVNALGET 262
+ L++R++ G Y+CV N G +
Sbjct: 66 AQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSS 102
Score = 35.0 bits (80), Expect = 0.006
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 124 PRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWR 160
P+I G++V+ CSA + + +
Sbjct: 11 PQIT--VQPETQSAIXGSDVSFTCSAASSSDSPMTFA 45
Score = 29.3 bits (65), Expect = 0.64
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 279 QIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
++R + G Y C+ SN S S +T++
Sbjct: 79 RLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 42.8 bits (101), Expect = 1e-05
Identities = 17/138 (12%), Positives = 27/138 (19%), Gaps = 60/138 (43%)
Query: 133 TDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQT 192
+V G + L C + W R +G + S
Sbjct: 11 ESFLVHPGDLLQLRCRLRDDV-QSINWLR--------DGVQLAE-------------SNR 48
Query: 193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYR 252
+ + + DS G Y
Sbjct: 49 TRITGEE----------------VEVQDSVPADS----------------------GLYA 70
Query: 253 CVAVNALGETDGFIKVYV 270
CV + G + V V
Sbjct: 71 CVTSSPSGSDTTYFSVNV 88
Score = 37.8 bits (88), Expect = 6e-04
Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 16/106 (15%)
Query: 20 DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSI 79
V + G + C + + + W++ + ++ R I
Sbjct: 2 SSGSSGVEVESFLVHPGDLLQLRCRLRD-DVQSINWLR---------DGVQLAESNRTRI 51
Query: 80 TFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPP 124
T + ++D D G Y C + + + V
Sbjct: 52 T-----GEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDAL 92
Score = 30.4 bits (69), Expect = 0.18
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 273 VDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTV 311
+ G+ +++ G Y C+ S+ S + V V
Sbjct: 51 ITGEEVEVQDSVPADSGLYACVTSSP-SGSDTTYFSVNV 88
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 42.5 bits (100), Expect = 1e-05
Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 9/103 (8%)
Query: 31 VTATVGKEALMACVVE-NLREYKVAWVK----MITQTILSIHHKVVTQNKRVSITFNDHR 85
V VG + C E R W + + I+ +N RVSI +
Sbjct: 6 VAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPAN 65
Query: 86 SWF-LHLRDVQETDRGWYMCQINTVPMTS---QKGYLQVVVPP 124
F + L ++ E D G Y C ++T + ++V V P
Sbjct: 66 LSFTVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEVEVSVFP 108
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 41.7 bits (98), Expect = 2e-05
Identities = 18/152 (11%), Positives = 31/152 (20%), Gaps = 62/152 (40%)
Query: 119 QVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPML 178
+ P + ++V G + L C + W R +G +
Sbjct: 5 EQAQPWGV--PVEVESLLVHPGDLLQLRCRLRDDV-QSINWLR--------DGVQLVE-- 51
Query: 179 TIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTL 238
S + + + DS
Sbjct: 52 -----------SNRTRITGEE----------------VEVRDSIPADS------------ 72
Query: 239 KIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
G Y CV + G + V V
Sbjct: 73 ----------GLYACVTSSPSGSDTTYFSVNV 94
Score = 38.2 bits (89), Expect = 3e-04
Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 22/109 (20%)
Query: 19 PDMPRFAEPVA------NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVT 72
P +P A+P ++ G + C + + + W++ +
Sbjct: 1 PTLPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLR---------DGVQLV 50
Query: 73 QNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQV 120
++ R IT + +RD D G Y C + + + V
Sbjct: 51 ESNRTRIT-----GEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 30.9 bits (70), Expect = 0.13
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 273 VDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTV 311
+ G+ ++R G Y C+ S+ S + V V
Sbjct: 57 ITGEEVEVRDSIPADSGLYACVTSSP-SGSDTTYFSVNV 94
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 41.9 bits (98), Expect = 3e-05
Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 11/105 (10%)
Query: 29 ANVTATVGKEALMACVVE---NLREYKVAWVKMITQTILSIHHKVVTQNK--------RV 77
+VT T + + C+ + R+ V W+ ++I + T + R+
Sbjct: 9 ESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRL 68
Query: 78 SITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV 122
++ L + +Q DR Y C++ + ++
Sbjct: 69 KVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKII 113
Score = 29.1 bits (65), Expect = 0.86
Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 17/94 (18%)
Query: 176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLN---YWTNEKGDMIIT------------G 220
P L P + G V++ C + W G +T
Sbjct: 3 PTLKTPESVTGT-WKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQ 61
Query: 221 DDYEDSRLINGYSCH-MTLKIRSILSHQFGSYRC 253
Y ++ ++L+I ++ Y C
Sbjct: 62 AKYRGRLKVSHKVPGDVSLQINTLQMDDRNHYTC 95
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 43.7 bits (102), Expect = 4e-05
Identities = 23/189 (12%), Positives = 53/189 (28%), Gaps = 54/189 (28%)
Query: 89 LHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLEC 147
+ +++ G Y ++ ++ ++++ + V G E++L
Sbjct: 147 ITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNY 206
Query: 148 --------SAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHT 199
+ G P + + + G+L P L G+ V + +E
Sbjct: 207 VVSEDIVGDSSGMPNLTIKYNWYLQR----EGQLSPT-------LIGSEVGEALE----- 250
Query: 200 EAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNAL 259
+ G + Y+D+ + CVA
Sbjct: 251 -------GFSITPDGHLFKESATYDDT----------------------AKFWCVAKLYQ 281
Query: 260 GETDGFIKV 268
D ++V
Sbjct: 282 QIEDETVEV 290
Score = 42.5 bits (99), Expect = 8e-05
Identities = 18/183 (9%), Positives = 39/183 (21%), Gaps = 52/183 (28%)
Query: 122 VPPRILLDRTSTDVVVREGTEVTLECSAVG-YPEPY---VAWRREDGKAI---------- 167
+ + + S G TL + G P P W + D +
Sbjct: 1 MAFTVSI--QSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTK-DDQPHENNTATLTVA 57
Query: 168 ---------------NYNGE------------LVPPMLTIPNQLEGAFVSQTVELHCHTE 200
+ + + Q VELH +
Sbjct: 58 DATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVK 117
Query: 201 AFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG 260
+ + + +I+ + I+ + + G Y
Sbjct: 118 FSGG-----KTPADNYELHYSWSKGEDVIDTTQ---DITIQEFTADKNGVYTVKVWGESE 169
Query: 261 ETD 263
++
Sbjct: 170 DSA 172
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 42.9 bits (101), Expect = 4e-05
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 9/82 (10%)
Query: 89 LHLRDVQETDRGWYMCQINTVPMTSQKGY-LQVVV-----PPRILLDRTSTDVVVREGTE 142
+ + G Y CQ + L++VV P + DR V+ G
Sbjct: 66 FVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGL---VLMPGEN 122
Query: 143 VTLECSAVGYPEPYVAWRREDG 164
++L CS+ P + +E
Sbjct: 123 ISLTCSSAHIPFDRFSLAKEGE 144
Score = 27.9 bits (62), Expect = 4.2
Identities = 9/36 (25%), Positives = 11/36 (30%), Gaps = 1/36 (2%)
Query: 278 FQIRKMSRLHMGAYLCIASNGVVPSV-SHRIMVTVH 312
F I M G Y C G S + + V
Sbjct: 66 FVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVT 101
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 40.8 bits (96), Expect = 4e-05
Identities = 14/104 (13%), Positives = 31/104 (29%), Gaps = 15/104 (14%)
Query: 22 PRFAEPVA-NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
FA+ + G + + + +V W K + + + + +
Sbjct: 8 AAFAKILDPAYQVDKGGRVRFVVELAD-PKLEVKWYK---------NGQEIRPSTKYIFE 57
Query: 81 FNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPP 124
+ L + + Q TD Y +++ L V P
Sbjct: 58 HKGCQR-ILFINNCQMTDDSEYYVTAGDEKCSTE---LFVRSGP 97
Score = 37.4 bits (87), Expect = 8e-04
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 134 DVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
V +G V + P+ V W + +G+ I
Sbjct: 17 AYQVDKGGRVRFVVE-LADPKLEVKWYK-NGQEI 48
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 41.5 bits (97), Expect = 4e-05
Identities = 12/117 (10%), Positives = 33/117 (28%), Gaps = 17/117 (14%)
Query: 26 EPVANVTATVGKEALMACVV----ENLREYKVAWVKMITQTILSIHHKVVTQNK------ 75
V VG + + C + W +I + +
Sbjct: 4 YTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEV 63
Query: 76 -----RVSITFN-DHRSWFLHLRDVQETDRGWYMCQINTVP-MTSQKGYLQVVVPPR 125
R+ + + + + ++ +D G + C + P + + + + V +
Sbjct: 64 GTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEK 120
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 40.8 bits (96), Expect = 5e-05
Identities = 17/106 (16%), Positives = 29/106 (27%), Gaps = 16/106 (15%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVK---MITQTILSIHHKVVTQNKRVS 78
+ + + TA G+ + C V + V W K I R
Sbjct: 8 IMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIP----------GPKSRYR 56
Query: 79 ITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPP 124
I + L + + D Y +S K + + P
Sbjct: 57 IRVEGKKH-ILIIEGATKADAAEYSVMTTGG-QSSAKLSVDLKSGP 100
Score = 38.5 bits (90), Expect = 3e-04
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
+ + D G V LEC V + V W + +G+ I
Sbjct: 7 GIMVT--KQLEDTTAYCGERVELECE-VSEDDANVKWFK-NGEEI 47
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 40.7 bits (95), Expect = 6e-05
Identities = 12/106 (11%), Positives = 33/106 (31%), Gaps = 12/106 (11%)
Query: 31 VTATVGKEALMACVVENLRE--YKVAWVKMI------TQTILSIHHKVVT--QNKRVSIT 80
+ +G+ + C + + + W K +L + ++ + ++
Sbjct: 6 IIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLL 65
Query: 81 FNDHRSWF-LHLRDVQETDRGWYMCQINTV-PMTSQKGYLQVVVPP 124
L + + D G Y C+I K +++ +
Sbjct: 66 GKVQFGEVSLTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLELRR 111
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 40.5 bits (95), Expect = 6e-05
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 11/92 (11%)
Query: 18 KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRV 77
K + V A G A ++C V + +V W K K ++ + +V
Sbjct: 8 KVVFAKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYK---------DGKKLSSSSKV 57
Query: 78 SITFNDHRSWFLHLRDVQETDRGWYMCQINTV 109
+ L ++ + + G Y C+
Sbjct: 58 RVEAVGCTR-RLVVQQAGQAEAGEYSCEAGGQ 88
Score = 37.4 bits (87), Expect = 7e-04
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 119 QVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
+VV R +V G TL C V + V W + DGK +
Sbjct: 8 KVVFAKEQPAHR---EVQAEAGASATLSCE-VAQAQTEVTWYK-DGKKL 51
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 40.3 bits (94), Expect = 8e-05
Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 13/105 (12%)
Query: 31 VTATVGKEALMACVVE---NLREYKVAWVK------MITQTILSIHHKVVT--QNKRVSI 79
VGK A + C + + W K T +L + VT ++ R +
Sbjct: 4 YKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQL 63
Query: 80 TFNDHRSWF-LHLRDVQETDRGWYMCQINTVP-MTSQKGYLQVVV 122
+ ++ L +++V D G Y C+I M +K L++ +
Sbjct: 64 KGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDI 108
Score = 28.0 bits (62), Expect = 1.8
Identities = 8/43 (18%), Positives = 11/43 (25%), Gaps = 3/43 (6%)
Query: 135 VVVREGTEVTLECS---AVGYPEPYVAWRREDGKAINYNGELV 174
V G L CS + W + EL+
Sbjct: 4 YKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELL 46
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 40.3 bits (94), Expect = 8e-05
Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 14/114 (12%)
Query: 26 EPVANVTATVGKEALMACVVENLRE--YKVAWVKM------ITQTILSIHHKVVT--QNK 75
E V G + C+ + W ++++ + VT +N
Sbjct: 2 ESHTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNS 61
Query: 76 RVSITFNDHRSWF-LHLRDVQETDRGWYMCQINTVPMTSQKGY---LQVVVPPR 125
R + N L + + D G Y C + Y ++ + PR
Sbjct: 62 RYQLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPELVPR 115
Score = 26.1 bits (57), Expect = 7.8
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 131 TSTDVVVREGTEVTLEC--SAVGYPEPYVAWRREDGKAINYNGELV 174
+ T V G VTL C S + W + + L+
Sbjct: 3 SHTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLI 48
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 40.2 bits (94), Expect = 1e-04
Identities = 17/115 (14%), Positives = 36/115 (31%), Gaps = 19/115 (16%)
Query: 27 PVANVTATVGKEALMACVV----ENLREYKVAWVKMITQTILS----IHHKVVTQNKRVS 78
P + G+ A + C E+ + W+ I +
Sbjct: 11 PEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYY 70
Query: 79 ITFNDHRSWF----------LHLRDVQETDRGWYMCQINTVPMTSQKG-YLQVVV 122
+ +++ ++Q +D G Y C++ P + K +L V+V
Sbjct: 71 PDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 125
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A
4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D
1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D*
3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 41.6 bits (97), Expect = 1e-04
Identities = 24/156 (15%), Positives = 46/156 (29%), Gaps = 10/156 (6%)
Query: 31 VTATVGKEALMACVVENLREYKVAWVK----MITQTILSIHHKVVTQNKRVSITFN-DHR 85
++ G A + C + W + + ++SI + R + N
Sbjct: 12 LSVPEGGMASLNCTSSDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLNKASL 71
Query: 86 SWFLHLRDVQETDRGWYMCQINTVPMTSQKGY----LQVVVPPRILLDRTSTDVVVREGT 141
LH+RD Q +D Y C + +Q +V V P I + + +
Sbjct: 72 HVSLHIRDSQPSDSALYFCAASEQNNYAQGLTFGLGTRVSVFPYIQNPDPAVYQLRDSKS 131
Query: 142 EVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPM 177
C + + + + V M
Sbjct: 132 SDKSVCLFTDFD-SQTNVSQSKDSDVYITDKCVLDM 166
Score = 28.5 bits (63), Expect = 2.2
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 134 DVVVREGTEVTLECSAVGYPEPYVAW-RREDGKA 166
+ V EG +L C++ Y W R+ G+
Sbjct: 11 SLSVPEGGMASLNCTSSDRNFQYFWWYRQHSGEG 44
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 42.3 bits (98), Expect = 1e-04
Identities = 19/80 (23%), Positives = 25/80 (31%), Gaps = 4/80 (5%)
Query: 89 LHLRDVQETDRGWYMCQINTVPMTSQKGY-LQVVVPPRILLDRTSTDVVVREGTEVTLEC 147
L VQ G Y+ I+ + Q L V PP++ L + L C
Sbjct: 256 FWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLC 315
Query: 148 SAVG-YPEPY--VAWRREDG 164
YP V W G
Sbjct: 316 LVSHFYPSGGLEVEWELRGG 335
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 39.6 bits (93), Expect = 1e-04
Identities = 19/90 (21%), Positives = 28/90 (31%), Gaps = 15/90 (16%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVK----MITQTILSIHHKVVTQNKRV 77
P+ + VG MA V +V W+K + + ++ KR
Sbjct: 9 VLIVTPLEDQQVFVGDRVEMAVEVSE-EGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67
Query: 78 SITFNDHRSWFLHLRDVQETDRGWYMCQIN 107
L DV + DRG Y N
Sbjct: 68 I----------LIFSDVVQEDRGRYQVITN 87
Score = 39.2 bits (92), Expect = 1e-04
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
P I+ D V G V + V V W + +G +
Sbjct: 8 PVLIV--TPLEDQQVFVGDRVEMAV-EVSEEGAQVMWMK-NGVEL 48
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 39.5 bits (92), Expect = 2e-04
Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 7/100 (7%)
Query: 31 VTATVGKEALMACVVE-NLREYKVAWVKMIT---QTILSIHHKVVTQNKRVSITFNDHRS 86
+ A VG L+ C + + W + + Q ++S R + +
Sbjct: 7 LQAPVGSSILVQCHYRLQDVKAQKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFLTDLGGG 66
Query: 87 WF-LHLRDVQETDRGWYMCQI--NTVPMTSQKGYLQVVVP 123
+ + +QE D G Y C + P + L ++ P
Sbjct: 67 LLQVEMVTLQEEDAGEYGCMVDGARGPQILHRVSLNILPP 106
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 39.6 bits (92), Expect = 2e-04
Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 10/102 (9%)
Query: 31 VTATVGKEALMACVVENLRE-------YKVAWVKMITQTILSIHHKVVTQNKRVSITFND 83
+ + G+ + C K A + + + S + + R +I +
Sbjct: 20 LQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDP 79
Query: 84 HRSWF-LHLRDVQETDRGWYMCQI--NTVPMTSQKGYLQVVV 122
+F + + D++E D G Y C+I + S+ +VV
Sbjct: 80 DAGFFTVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYLVV 121
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 40.7 bits (95), Expect = 3e-04
Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 9/100 (9%)
Query: 89 LHLRDVQETDRGWYMCQINTVPMTSQK-GYLQVVV-----PPRILLDRTSTDVVVREGTE 142
++ D+ G Y C + S+ L +VV P + + V G +
Sbjct: 62 FYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGP---EVISGEK 118
Query: 143 VTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPN 182
VT C ++ + + V +
Sbjct: 119 VTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGP 158
Score = 27.9 bits (62), Expect = 3.7
Identities = 14/79 (17%), Positives = 21/79 (26%), Gaps = 12/79 (15%)
Query: 89 LHLRDVQETDRGWYMCQINTVP----MTSQKGYLQV---VVPPRILLDRTSTDVVVREGT 141
L V RG Y C + S+ L V + + D T
Sbjct: 154 FPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIENTSL----APEDPTFPADT 209
Query: 142 EVTLEC-SAVGYPEPYVAW 159
T + G + + W
Sbjct: 210 WGTYLLTTETGLQKDHALW 228
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 41.0 bits (96), Expect = 3e-04
Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 10/90 (11%)
Query: 17 EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKR 76
PRF G+ A C V V W K + + Q+ +
Sbjct: 478 RSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHK---------DDRELKQSVK 528
Query: 77 VSITFNDHRSWFLHLRDVQETDRGWYMCQI 106
+N + L + V+ D+G Y +
Sbjct: 529 YMKRYNGNDY-GLTINRVKGDDKGEYTVRA 557
Score = 40.6 bits (95), Expect = 4e-04
Identities = 19/137 (13%), Positives = 31/137 (22%), Gaps = 55/137 (40%)
Query: 134 DVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTV 193
V EG C + P V W ++D + + Q+V
Sbjct: 491 GTEVGEGQSANFYCRVIASSPPVVTWHKDDRE-----------------------LKQSV 527
Query: 194 ELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC 253
+ L I +D G Y
Sbjct: 528 KYMKRYNGNDYGL----------TINRVKGDDK----------------------GEYTV 555
Query: 254 VAVNALGETDGFIKVYV 270
A N+ G + + + V
Sbjct: 556 RAKNSYGTKEEIVFLNV 572
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 38.8 bits (90), Expect = 4e-04
Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 6/66 (9%)
Query: 209 WTNEKGDMIITGDDYEDSRL----INGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDG 264
W ++ + + N H L++ G+Y +A N G+
Sbjct: 34 WL--FNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASA 91
Query: 265 FIKVYV 270
I
Sbjct: 92 SIMAAF 97
Score = 28.8 bits (64), Expect = 0.98
Identities = 14/86 (16%), Positives = 23/86 (26%), Gaps = 15/86 (17%)
Query: 69 KVVTQNKRVSITFNDH------RSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVV 121
V+ + + F + R L L + G Y N S +
Sbjct: 39 SVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 98
Query: 122 VPPRIL--------LDRTSTDVVVRE 139
P + TS D V ++
Sbjct: 99 DNPFEFNPEDPIPDTNSTSGDPVEKK 124
Score = 28.4 bits (63), Expect = 1.5
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 279 QIRKMSRLHMGAYLCIASN--GVVPSVSHRIMVTV 311
++ + + ++ G Y +A+N G S IM
Sbjct: 66 RLNQPTHVNNGNYTLLAANPFG---QASASIMAAF 97
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 39.0 bits (91), Expect = 6e-04
Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 11/87 (12%)
Query: 89 LHLRDVQETDRGWYMCQINTVPMTSQK-GYLQVVV-----PPRILLDRTSTDVVVREGTE 142
L + ++ + G Y C + S L++V P + V G +
Sbjct: 54 LFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSA---QPGPAVSSGGD 110
Query: 143 VTLECSAVGYPEPYVAWRREDGKAINY 169
VTL+C + + ++ +G Y
Sbjct: 111 VTLQCQTRYGFDQFALYK--EGDPAPY 135
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 39.0 bits (91), Expect = 7e-04
Identities = 13/97 (13%), Positives = 24/97 (24%), Gaps = 3/97 (3%)
Query: 89 LHLRDVQETDRGWYMCQINTVPMTSQKG---YLQVVVPPRILLDRTSTDVVVREGTEVTL 145
++ D+ G Y C + S+ L V V G +VT
Sbjct: 59 FYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTF 118
Query: 146 ECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPN 182
C ++ + + V +
Sbjct: 119 YCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGP 155
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 37.6 bits (87), Expect = 0.001
Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 8/110 (7%)
Query: 31 VTATVGKEALMACVVE-NLREYKVAWVKMI-----TQTILSIHHKVVTQNKRVSITFNDH 84
V + CV Y W + + + + + RVSI N
Sbjct: 12 VNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQK 71
Query: 85 RSWF-LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTST 133
F + + D+ +TD Y C I +QV + P + ++
Sbjct: 72 NRTFTVTMEDLMKTDADTYWCGIEK-TGNDLGVTVQVTIDPAPVTQEETS 120
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 38.7 bits (90), Expect = 0.001
Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 13/85 (15%)
Query: 89 LHLRDVQETDRGWYMCQ---INTVPMTSQK-GYLQVVV-----PPRILLDRTSTDVVVRE 139
++ V G Y C+ ++ S + ++V P +L +V+
Sbjct: 76 FNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGP---LVKS 132
Query: 140 GTEVTLECSAVGYPEPYVAWRREDG 164
G V L+C + E + +E
Sbjct: 133 GERVILQCWSDIMFEHF-FLHKEGI 156
Score = 33.3 bits (76), Expect = 0.087
Identities = 21/106 (19%), Positives = 29/106 (27%), Gaps = 10/106 (9%)
Query: 68 HKVVTQNKRVSITFNDHRSWF---LHLRDVQETDRGWYMCQ---INTVPMTSQKG---YL 118
HK + H + + G Y C +T S +
Sbjct: 152 HKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDI 211
Query: 119 QVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDG 164
V P V+ G VTL CS+ + Y RE G
Sbjct: 212 VVTGPYEKPSLSAQPGPKVQAGESVTLSCSSRSSYDMY-HLSREGG 256
Score = 26.8 bits (59), Expect = 8.9
Identities = 12/42 (28%), Positives = 13/42 (30%), Gaps = 6/42 (14%)
Query: 278 FQIRKMSRLHMGAYLCIASNGVVPSV-SHR-----IMVTVHC 313
F I M G Y C S P S I+VT
Sbjct: 176 FSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPY 217
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 38.3 bits (89), Expect = 0.002
Identities = 23/162 (14%), Positives = 43/162 (26%), Gaps = 35/162 (21%)
Query: 31 VTATVGKEALMACVVENLREYKVAWVK---------MITQTILSIHHKVVTQNK---RVS 78
V G A + C + + W ++ S VV ++
Sbjct: 12 VIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLY--YDSYTSSVVLESGISPGKY 69
Query: 79 ITFND-HRSWFLHLRDVQETDRGWYMCQ-------------------INTVPMTSQKGYL 118
T+ ++ + LR++ E D G Y C +
Sbjct: 70 DTYGSTRKNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKD 129
Query: 119 QVVVPPRILLDRTSTDVVVREGTEVTLECSA-VGYPEPYVAW 159
+ + + V + VTL C + Y+ W
Sbjct: 130 AAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFW 171
Score = 31.7 bits (72), Expect = 0.26
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 131 TSTDVVVREGTEVTLECSAVGYPEPYVAW-RREDGKA 166
+ V+ + G+ + C Y+ W ++GKA
Sbjct: 8 RTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKA 44
Score = 28.6 bits (64), Expect = 2.3
Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 17/112 (15%)
Query: 29 ANVTATVGKEALMACVVE-NLREYKVAWVKMITQT-----ILSIHHKVVTQNK---RVSI 79
++V+ V K + C+ E + Y + W K + I I QN R S+
Sbjct: 144 SSVSMPVRKAVTLNCLYETSWWSYYIFWYK---RLPSKEMIFLIRQGSDEQNAKSGRYSV 200
Query: 80 TFN-DHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYL----QVVVPPRI 126
F +S L + +Q D Y C + + K +V V PR
Sbjct: 201 NFKKAAKSVALTISALQLEDSAKYFCALGESLTRADKLIFGKGTRVTVEPRS 252
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 37.9 bits (88), Expect = 0.002
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 10/84 (11%)
Query: 89 LHLRDVQETDRGWYMCQINTVPMTSQK-GYLQVVV-----PPRILLDRTSTDVVVREGTE 142
+ + E G Y C + SQ L++V+ P + + +V G
Sbjct: 60 FSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSP---LVTSGKS 116
Query: 143 VTLECSAVGYPEPYVAWRREDGKA 166
VTL C + + ++ +E
Sbjct: 117 VTLLCQSRSPMDTFL-LCKERAAH 139
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 36.2 bits (84), Expect = 0.002
Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 8/101 (7%)
Query: 31 VTATVGKEALMACVVEN-LREYKVAWVKMIT----QTILSIHHKVVTQNK-RVSITFNDH 84
V+ + C + ++YK W + + +T++ K RVSI N
Sbjct: 11 VSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQR 70
Query: 85 RSWF-LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPP 124
F + + D++ +D G Y C I + V + P
Sbjct: 71 DFIFTVTMEDLRMSDAGIYWCGITK-GGLDPMFKVTVNIGP 110
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 37.2 bits (86), Expect = 0.003
Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 11/85 (12%)
Query: 89 LHLRDVQETDRGWYMCQINTVPMTSQK-GYLQVVV-----PPRILLDRTSTDVVVREGTE 142
+ + E G Y C + S+ L++VV P + + VV G
Sbjct: 60 FSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSP---VVTSGEN 116
Query: 143 VTLECSAVGYPEPYVAWRREDGKAI 167
VTL+C + + ++ +G
Sbjct: 117 VTLQCGSRLRFDRFILTE--EGDHK 139
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 38.2 bits (88), Expect = 0.003
Identities = 22/138 (15%), Positives = 35/138 (25%), Gaps = 14/138 (10%)
Query: 8 GCTYFKTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIH 67
K + NV G+ A C L
Sbjct: 151 AIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRL-------WLQGI 203
Query: 68 HKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV--PMTSQKGYLQVVVPP- 124
K + +T + ++ + + D G Y C I T S L V PP
Sbjct: 204 DVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPV 263
Query: 125 ----RILLDRTSTDVVVR 138
L +T + ++
Sbjct: 264 PIAPPQLASVGATYLWIQ 281
Score = 38.2 bits (88), Expect = 0.003
Identities = 7/73 (9%), Positives = 20/73 (27%), Gaps = 2/73 (2%)
Query: 189 VSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQF 248
Q C + + + + ++ ++ + + + +
Sbjct: 178 AGQFATFQCSAIGRTVAGDRLW--LQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDA 235
Query: 249 GSYRCVAVNALGE 261
G YRC+ G
Sbjct: 236 GKYRCMIRTEGGV 248
Score = 28.6 bits (63), Expect = 2.9
Identities = 17/170 (10%), Positives = 34/170 (20%), Gaps = 4/170 (2%)
Query: 143 VTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAF 202
+ + P W +N + PN H A
Sbjct: 94 LNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNF-YQVIFEVITSGHQGYLAI 152
Query: 203 PASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET 262
++ + G ++
Sbjct: 153 DEVKVLGHPCTRTPHFL--RIQNVEVNAGQFATFQCSAIGRTVAGD-RLWLQGIDVRDAP 209
Query: 263 DGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
IKV + F + ++ G Y C+ +S+ + V
Sbjct: 210 LKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK 259
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 37.5 bits (86), Expect = 0.003
Identities = 35/197 (17%), Positives = 54/197 (27%), Gaps = 37/197 (18%)
Query: 19 PDMPRFAEPVANVTATVGKEALMACVVEN---LREYKVAWVKMITQTILSIHHKVVTQNK 75
P+ A VGK + C VE V ++ + L V +
Sbjct: 86 PERVELAPL--PSWQPVGKNLTLRCQVEGGAPRANLTVVLLRG--EKELK-REPAVGEPA 140
Query: 76 RVSITFNDHRSWFLHLRDVQETDRGWYMCQ---------INTVPMTSQKGYLQVVVPPRI 126
V+ T R + + C+ + TS LQ V P
Sbjct: 141 EVTTTVLVRR----------DHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPAT 190
Query: 127 LLDRTSTDVVVREGTEVTLECSAVG-YPEPYVAWRREDGK-----AINYNGELVPPMLTI 180
S V+ T+ T+ CS G +P G + Y + ++
Sbjct: 191 PPQLVSPRVL-EVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASV 249
Query: 181 PNQLEGAFVSQTVELHC 197
E T L C
Sbjct: 250 SVTAED---EGTQRLTC 263
Score = 31.8 bits (71), Expect = 0.25
Identities = 22/181 (12%), Positives = 40/181 (22%), Gaps = 52/181 (28%)
Query: 119 QVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWR------------------ 160
Q V P V++ G V + CS +
Sbjct: 1 QTSVSPS--------KVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVY 52
Query: 161 -----REDG--------------KAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTE- 200
+ED P + + V + + L C E
Sbjct: 53 ELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEG 112
Query: 201 AFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG 260
P + +G+ + + G +T + H ++ C L
Sbjct: 113 GAPRANLTVVLLRGEKELKREPAV------GEPAEVTTTVLVRRDHHGANFSCRTELDLR 166
Query: 261 E 261
Sbjct: 167 P 167
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 35.8 bits (83), Expect = 0.003
Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 111 MTSQKGYLQVVVPPRILLDRTSTDVV-VREGTEVTLECSAVGYPEPYVAWRREDGKAINY 169
M + + + V +G ++ L + + V W + +G+ I
Sbjct: 1 MHHHHHHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVE-LADHDAEVKWLK-NGQEIQM 58
Query: 170 NGE 172
+G
Sbjct: 59 SGS 61
Score = 35.4 bits (82), Expect = 0.004
Identities = 13/127 (10%), Positives = 37/127 (29%), Gaps = 31/127 (24%)
Query: 14 TKCEKPDMPRFAEPV-ANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVT 72
+ ++ F + + + G + + + + + +V W+K ++
Sbjct: 8 SSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKN--------GQEIQM 58
Query: 73 QNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTS 132
+ + L + D Y C + ++ S
Sbjct: 59 SGSKYIFE-SIGAKRTLTISQCSLADDAAYQCVVGG--------------------EKCS 97
Query: 133 TDVVVRE 139
T++ V+E
Sbjct: 98 TELFVKE 104
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 36.8 bits (85), Expect = 0.004
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 73 QNKRVSITFN-DHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRI 126
++ R +I FN + + LH+ D Q D Y C + + G Q+VV P I
Sbjct: 57 EDGRFTIFFNKREKKFSLHIADSQPGDSATYFCAASDNRIFFGDG-TQLVVKPNI 110
Score = 27.1 bits (60), Expect = 6.2
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 134 DVVVREGTEVTLECSAVGYPEPYVAW-RREDGKA 166
+ V EG L CS Y W + G++
Sbjct: 9 SLTVWEGETAILNCSYEDSTFDYFPWYHQFPGES 42
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 36.4 bits (84), Expect = 0.006
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 11/83 (13%)
Query: 89 LHLRDVQETDRGWYMCQINTVPM-TSQK-GYLQVVV-----PPRILLDRTSTDVVVREGT 141
+ + G Y C + S+ L++VV P + + VV G
Sbjct: 60 FPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSP---VVNSGG 116
Query: 142 EVTLECSAVGYPEPYVAWRREDG 164
VTL+C + + ++ +E
Sbjct: 117 NVTLQCDSQVAFDGFI-LCKEGE 138
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 36.2 bits (83), Expect = 0.006
Identities = 16/81 (19%), Positives = 23/81 (28%), Gaps = 10/81 (12%)
Query: 89 LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV---PPRILLDRTSTDVVVREGTEVTL 145
L D++E + +C T Q + P R+ L G TL
Sbjct: 54 RQLVDIREPE-TQPVCFFRCARRTLQA-RGLIRTFQRPDRVEL--MPLPPWQPVGENFTL 109
Query: 146 ECSAVG-YPEPY--VAWRRED 163
C G P + R
Sbjct: 110 SCRVPGAGPRASLTLTLLRGA 130
Score = 31.2 bits (70), Expect = 0.27
Identities = 18/165 (10%), Positives = 32/165 (19%), Gaps = 39/165 (23%)
Query: 134 DVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGE--------------------- 172
V G + L CS + G
Sbjct: 11 VAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDIREPETQPVCFF 70
Query: 173 ----------------LVPPMLTIPNQLEGAFVSQTVELHCHTE-AFPASLNYWTNEKGD 215
P + + V + L C A P + T +G
Sbjct: 71 RCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGA 130
Query: 216 MIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG 260
+ + +T + + ++ C A L
Sbjct: 131 QELIRRSFAGEPP-RARGAVLTATVLARREDHGANFSCRAELDLR 174
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 35.6 bits (81), Expect = 0.010
Identities = 19/83 (22%), Positives = 24/83 (28%), Gaps = 13/83 (15%)
Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAVG-YPEPYVAWRREDGKAINYNGELVPP 176
LQV P + V V G L C V WR D +
Sbjct: 8 LQVEPPEPV--------VAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRS 59
Query: 177 MLTIPNQLEGAFVSQTVELHCHT 199
+LT+ N A +S C
Sbjct: 60 VLTVRN----ASLSAAGTRVCVG 78
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Length = 238
Score = 35.5 bits (82), Expect = 0.012
Identities = 24/166 (14%), Positives = 46/166 (27%), Gaps = 32/166 (19%)
Query: 29 ANVTATVGKEALMACVVENLREYKVAWVKMITQT-------ILSIHHKVVTQNKRVSITF 81
N A G + ++C N + W + Q I + T+ + +
Sbjct: 8 RNKVAVTGGKVTLSCNQTNNHNN-MYWYR---QDTGHGLRLIHYSYGAGSTEKGDIPDGY 63
Query: 82 N----DHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTD--- 134
++ L L + Y C + T+++ + +L
Sbjct: 64 KASRPSQENFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDA 123
Query: 135 -------------VVVREGTEVTLECSAVGYPEPYVAWRRED-GKA 166
+ V EG L CS Y W ++ G+
Sbjct: 124 AKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEG 169
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 36.0 bits (82), Expect = 0.013
Identities = 27/136 (19%), Positives = 37/136 (27%), Gaps = 21/136 (15%)
Query: 22 PRFAEPVANVTATVGKEALMACVVENLRE-YKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
P +T+ G + C + V WV S + +R
Sbjct: 7 PAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLR-KPAAGSHPSRWAGMGRR---- 61
Query: 81 FNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREG 140
L LR VQ D G Y C P + +L V VPP R+
Sbjct: 62 --------LLLRSVQLHDSGNYSCYRAGRPAGTV--HLLVDVPP-----EEPQLSCFRKS 106
Query: 141 TEVTLECSAVGYPEPY 156
+ C P
Sbjct: 107 PLSNVVCEWGPRSTPS 122
Score = 35.2 bits (80), Expect = 0.020
Identities = 18/184 (9%), Positives = 42/184 (22%), Gaps = 53/184 (28%)
Query: 119 QVVVPPRILLDRTSTDVVVREGTEVTLECSAV-GYPEPYVAWRREDGKAINYNGELVP-- 175
V + + G VTL C V V W A ++
Sbjct: 8 AQEVARGV--------LTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMG 59
Query: 176 PMLTIPN---------------------QLEGAFVSQTVELHCHTEAFPASLN------- 207
L + + L + +L C ++ +++
Sbjct: 60 RRLLLRSVQLHDSGNYSCYRAGRPAGTVHLLVDVPPEEPQLSCFRKSPLSNVVCEWGPRS 119
Query: 208 -----------YWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV 256
+ + + S+ +SC + + +
Sbjct: 120 TPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIV---SMCVA 176
Query: 257 NALG 260
+++G
Sbjct: 177 SSVG 180
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 33.7 bits (77), Expect = 0.017
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 9/85 (10%)
Query: 31 VTATVGKEALMACVVE---NLREYKVAWVK-----MITQTILSIHHKVVTQNKRVSITFN 82
V + G + C R + W + I S + R ++T
Sbjct: 10 VNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNF 69
Query: 83 DHRSWF-LHLRDVQETDRGWYMCQI 106
F +++ + + D G Y C +
Sbjct: 70 PENGTFVVNIAQLSQDDSGRYKCGL 94
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 35.0 bits (80), Expect = 0.020
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 5/88 (5%)
Query: 71 VTQNKRVSITFN-DHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGY----LQVVVPPR 125
N R + T + D + LH+ Q +D Y+C ++ T + Y Q+ V P
Sbjct: 58 TKSNGRYTATLDADTKQSSLHITASQLSDSASYICVVSDRGSTLGRLYFGRGTQLTVWPD 117
Query: 126 ILLDRTSTDVVVREGTEVTLECSAVGYP 153
I + + + C +
Sbjct: 118 IQNPDPAVYQLRDSKSSDKSVCLFTDFD 145
Score = 28.1 bits (62), Expect = 3.2
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 131 TSTDVVVREGTEVTLECSAVGYPEPYVAW 159
+ +++ EG TL+C+ P + W
Sbjct: 9 SPQSLIILEGKNCTLQCNYTVSPFSNLRW 37
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 35.0 bits (80), Expect = 0.021
Identities = 20/109 (18%), Positives = 33/109 (30%), Gaps = 21/109 (19%)
Query: 89 LHLRDVQETDRGWYMCQ---INTVPMTSQK-GYLQVVV-----PPRILLDRTSTDVVVRE 139
+ + + G Y C ++ S L +V+ P + V
Sbjct: 64 FSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGP---TVLA 120
Query: 140 GTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAF 188
G VTL CS+ + Y R GE + ++ G F
Sbjct: 121 GESVTLSCSSRSSYDMYHLSR---------EGEAHERRFSAGPKVNGTF 160
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 33.3 bits (76), Expect = 0.028
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 72 TQNKRVSITFNDHRSWF-LHLRDVQETDRGWYMCQINTVPMTS 113
Q R+ + + + ++Q D G Y C I P
Sbjct: 65 VQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEP 107
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 34.1 bits (78), Expect = 0.035
Identities = 22/148 (14%), Positives = 47/148 (31%), Gaps = 11/148 (7%)
Query: 31 VTATVGKEALMACVVENLREYKVAWVKMIT----QTILSIHHKVVTQNKRVSITFN-DHR 85
+TAT G + C + + W + + + + R S +
Sbjct: 9 MTATEGAIVQINCTYQTSGFNGLFWYQQHAGEAPTFLSYNVLDGLEEKGRFSSFLSRSKG 68
Query: 86 SWFLHLRDVQETDRGWYMCQ----INTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGT 141
+L L+++Q D Y+C + T +G ++V P I + + +
Sbjct: 69 YSYLLLKELQMKDSASYLCAVQASGGSYIPTFGRG-TSLIVHPYIQNPDPAVYQLRDSKS 127
Query: 142 EVTLECSAVG-YPEPYVAWRREDGKAIN 168
C + V+ ++ I
Sbjct: 128 SDKSVCLFTDFDSQTNVSQSKDSDVYIT 155
Score = 28.3 bits (63), Expect = 2.8
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 134 DVVVREGTEVTLECSAVGYPEPYVAW-RREDGKA 166
++ EG V + C+ + W ++ G+A
Sbjct: 8 EMTATEGAIVQINCTYQTSGFNGLFWYQQHAGEA 41
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 33.0 bits (75), Expect = 0.039
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 11/101 (10%)
Query: 31 VTATVGKEALMACVV----ENLREYKVAWVKMITQTILSIHHKVVTQNKRVS----ITFN 82
+ G A + C L V W + + + R++ F
Sbjct: 17 IRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFL 76
Query: 83 DHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKG---YLQV 120
LH+RDV+ D Y+C++ + + G L V
Sbjct: 77 HDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTGNGTRLVV 117
Score = 31.5 bits (71), Expect = 0.12
Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 13/53 (24%)
Query: 116 GYLQVVVPPRILLDRTSTDVVVREGTEVTLEC----SAVGYPEPYVAWRREDG 164
G L V PP ++ EG+ L C S V W R++
Sbjct: 7 GALWVSQPP---------EIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEV 50
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I
immune system; HET: NAG; 2.89A {Mus musculus}
Length = 229
Score = 33.9 bits (77), Expect = 0.047
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 62 TILSIHHKVVTQNKRVSITFN-DHRSWFLHLRDVQETDRGWYMCQINT 108
L + +N R+ TFN R LH++D Q D G Y C
Sbjct: 44 ITLFYLAQGTKENGRLKSTFNSKERYSTLHIKDAQLEDSGTYFCAAED 91
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 32.5 bits (74), Expect = 0.053
Identities = 23/110 (20%), Positives = 36/110 (32%), Gaps = 17/110 (15%)
Query: 31 VTATVGKEALMACVV------ENLREYKVAWVKMITQT----ILSIHHKVVTQNK--RVS 78
V G L+ C+ W + I S K+V + R
Sbjct: 10 VQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAE 69
Query: 79 ITFN-DHRSWFLHLRDVQETDRGWYMCQI---NTVPMTSQKGYLQVVVPP 124
+ N DH+ L L+D++ D G Y + ++ KG V V
Sbjct: 70 LMGNMDHKVCNLLLKDLKPEDSGTYNFRFEISDSNRWLDVKG-TTVTVTT 118
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 32.2 bits (73), Expect = 0.054
Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 10/100 (10%)
Query: 33 ATVGKEALMACVVENLREYKVA--WVK--MITQTILSIHHKVVTQNKRVSITFNDHRSWF 88
GKE L+ +V NL ++ W K + I + + TQ ++ +
Sbjct: 12 VAEGKEVLL--LVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIY 69
Query: 89 ----LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPP 124
L ++++ + D G+Y + + +++ Q V P
Sbjct: 70 PNASLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRVYP 109
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 33.5 bits (76), Expect = 0.064
Identities = 21/104 (20%), Positives = 33/104 (31%), Gaps = 4/104 (3%)
Query: 73 QNKRVSITFN-DHRSWFLHLRDVQETDRGWYMC-QINTVPMTSQKGYLQVVVPPRILLDR 130
N R S T + D + LH+ D Y C + G Q++V P I
Sbjct: 58 SNGRYSATLDKDAKHSTLHITATLLDDTATYFCVVGDRGSALFGSGT-QLIVIPYIQNPE 116
Query: 131 TSTDVVVREGTEVTLECSAVG-YPEPYVAWRREDGKAINYNGEL 173
+ + ++ + C + V E G I L
Sbjct: 117 PAVYQLKDPRSQDSTLCLFTDFDSQINVPKTMESGTFITDKCVL 160
Score = 28.5 bits (63), Expect = 2.5
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 134 DVVVREGTEVTLECSAVGYPEPYVAW 159
+VVR+G L+C+ P+ ++ W
Sbjct: 10 SLVVRQGENCVLQCNYSVTPDNHLRW 35
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 31.7 bits (72), Expect = 0.086
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 72 TQNKRVSITFNDHRSWF-LHLRDVQETDRGWYMCQINTVPMTS 113
Q R+ + + + ++Q D G Y C I P
Sbjct: 60 VQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEP 102
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 33.3 bits (75), Expect = 0.088
Identities = 25/164 (15%), Positives = 50/164 (30%), Gaps = 39/164 (23%)
Query: 133 TDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQT 192
D V+ G+++T C + + + I+ +GE V + I N A
Sbjct: 206 QDKVILVGSDITFCCVSQEKVLSALIG-HTNCPLIHLDGENV--AIKIRNISVSASSGTN 262
Query: 193 VELHCHTEAF------------PASLNYWTNEKGDMIITGDDYEDSRLINGY-------- 232
V F P LN T++ ++I + + + L+
Sbjct: 263 VVFTTEDNIFGTVIFAGYPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVE 322
Query: 233 ----------------SCHMTLKIRSILSHQFGSYRCVAVNALG 260
+ L + + + + ++ A N LG
Sbjct: 323 SFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLG 366
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain,
variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 116
Score = 31.9 bits (73), Expect = 0.090
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 131 TSTDVVVREGTEVTLECSAVG-YPEPYVAW 159
+S D V G+EV L C+ Y P + W
Sbjct: 6 SSPDQTVASGSEVVLLCTYDTVYSNPDLFW 35
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 32.2 bits (73), Expect = 0.14
Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 12/86 (13%)
Query: 89 LHLRDVQETDRGWYMCQ---INTVPMTSQK-GYLQVVV----PPRILLDRTSTDVVVREG 140
+ + + G Y C ++ S L +V+ L + V G
Sbjct: 65 FSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGP--TVLAG 122
Query: 141 TEVTLECSAVGYPEPYVAWRREDGKA 166
VTL CS+ + Y R +G+A
Sbjct: 123 ENVTLSCSSRSSYDMYHLSR--EGEA 146
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B
3e3q_D
Length = 226
Score = 32.3 bits (73), Expect = 0.14
Identities = 24/153 (15%), Positives = 44/153 (28%), Gaps = 19/153 (12%)
Query: 31 VTATVGKEALMACVVENLREYKVAWVKMITQT-------ILSIH--HKVVTQNKRVSITF 81
VT + G + C + W Q +L + VV F
Sbjct: 19 VTVSEGASLQLRCKYSYSATPYLFWYV---QYPRQGLQMLLKYYSGDPVVQGVNGFEAEF 75
Query: 82 N-DHRSWFLHLRDVQETDRGWYMCQI----NTVPMTSQKGYLQVVVPPRILLDRTSTDVV 136
+ S+ L V +D Y C + ++ KG ++ V P I + +
Sbjct: 76 SKSDSSFHLRKASVHWSDSAVYFCAVSAKGTGSKLSFGKG-AKLTVSPNIQNPDPAVYQL 134
Query: 137 VREGTEVTLECSAVG-YPEPYVAWRREDGKAIN 168
+ C + V+ ++ I
Sbjct: 135 RDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYIT 167
Score = 29.2 bits (65), Expect = 1.4
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 131 TSTDVVVREGTEVTLECSAVGYPEPYVAW 159
V V EG + L C PY+ W
Sbjct: 15 PDARVTVSEGASLQLRCKYSYSATPYLFW 43
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 32.1 bits (73), Expect = 0.15
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 131 TSTDVVVREGTEVTLECSAVGYPEPYVAW 159
+ V+ + GT V +EC ++ + + W
Sbjct: 7 HPSWVISKSGTSVKIECRSLDFQATTMFW 35
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 31.3 bits (70), Expect = 0.16
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 32 TATVGKEALMACVVEN-LREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLH 90
+ G + C V+ V W K+ T + + + + + +I+F + LH
Sbjct: 22 SILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISF-----FILH 76
Query: 91 LRDVQETDRGWYMCQIN 107
V D G Y C N
Sbjct: 77 FEPVLPNDNGSYRCSAN 93
>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell
repertoire, auto-immunity, I system; HET: NAG; 3.50A
{Homo sapiens} SCOP: b.1.1.1
Length = 207
Score = 31.9 bits (72), Expect = 0.18
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Query: 71 VTQNKRVSITFN-DHRSWFLHLRDVQETDRGWYMCQIN----TVPMTSQKGYLQVVVPP 124
+ R+ +T + +S L + + D Y C + T G V+
Sbjct: 55 EKHSGRLRVTLDTSKKSSSLLITASRAADTASYFCATDTTSGTYKYIFGTGTRLKVLAN 113
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 31.9 bits (72), Expect = 0.20
Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 14/104 (13%)
Query: 76 RVSITFNDHRSWFLHLRDVQETDRGWYMCQ----------INTVPMTSQKGYLQVVVPPR 125
R S+ D +++ ++ D Y C + L+ V PP+
Sbjct: 64 RFSVQQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPK 123
Query: 126 ILLDRTSTDVVVREGTEVTLECSAVG-YPEPY-VAWRREDGKAI 167
+ L S + + TL C A G +P+ ++W +GK +
Sbjct: 124 VSLFEPSKA-EIANKQKATLVCLARGFFPDHVELSWWV-NGKEV 165
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 32.0 bits (71), Expect = 0.24
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 89 LHLRDVQETDRGWYMCQ------INTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTE 142
L + ++ E D G Y C TV K L+V V P+ ++ T VV EG+
Sbjct: 588 LLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKPVVAPT-LSVVQTEGSR 646
Query: 143 VTLECSA 149
+ +
Sbjct: 647 IATKVLV 653
Score = 29.7 bits (65), Expect = 1.6
Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 13/99 (13%)
Query: 175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSC 234
P + T EL C ++ A + +W + G + Y +
Sbjct: 533 PDKSKGSYRQHFFKHGGTAELKCSQKSNLARV-FWKFQNGVLKAESPKY--GLMGRK--- 586
Query: 235 HMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLV 273
L I ++ G Y+C++ K +V
Sbjct: 587 --NLLIFNLSEGDSGVYQCLSEE-----RVKNKTVFQVV 618
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 32.3 bits (73), Expect = 0.25
Identities = 25/193 (12%), Positives = 44/193 (22%), Gaps = 64/193 (33%)
Query: 121 VVPPRILLDRTSTDVVVREGTEVTLECS-------AVGYPEPYVAWRREDGKAINYNGEL 173
+ P VV+ + T C Y+ W+ +
Sbjct: 7 YISPE--------SPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTI 58
Query: 174 VPP---MLTIPNQLEGAFVSQTVELHCHTEAF--------------------PASLNYWT 210
+ +T + S ++L C+ F P +L+
Sbjct: 59 INRTASSVTFTD-----IASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIV 113
Query: 211 NEKGDMIIT--------------------GDDYEDSRLINGYSCHMTLKIRSILSHQFGS 250
NE M + D + T+ S +
Sbjct: 114 NEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTV-DYSTVYFVNIE 172
Query: 251 YRCVAVNALGETD 263
A NALG+
Sbjct: 173 VWVEAENALGKVT 185
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 31.8 bits (72), Expect = 0.26
Identities = 8/42 (19%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 126 ILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAW-RREDGKA 166
++ + + V+ + GT V +EC ++ + + W R+ ++
Sbjct: 25 AVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQS 66
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus,
PP65, T cell receptor (TCR), immune response, public
response; 2.80A {Homo sapiens}
Length = 199
Score = 31.1 bits (70), Expect = 0.34
Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 2/98 (2%)
Query: 73 QNKRVSITFN-DHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRT 131
+ R+S T N +L+++ Q D Y+C NT + V P I
Sbjct: 57 KKGRISATLNTKEGYSYLYIKGSQPEDSATYLCARNTGNQFYFGTGTSLTVIPNIQNPDP 116
Query: 132 STDVVVREGTEVTLECSAVG-YPEPYVAWRREDGKAIN 168
+ + + C + V+ ++ I
Sbjct: 117 AVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDAYIT 154
Score = 29.5 bits (66), Expect = 1.1
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 134 DVVVREGTEVTLECSAVGYPEPYVAW-RREDGKA 166
+ V+EG CS + W R E K+
Sbjct: 9 SLHVQEGDSTNFTCSFPSSNFYALHWYRWETAKS 42
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 30.3 bits (68), Expect = 0.35
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 76 RVSITFN-DHRSWFLHLRDVQETDRGWYMCQINTVPM--TSQKGYLQVVV 122
R + + ++ L +RD + +D G Y ++ + + L V V
Sbjct: 76 RFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNV 125
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune
system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A
3qib_C 2ial_A 2iam_C 2ian_D 3rug_E* 3axl_A
Length = 205
Score = 30.8 bits (69), Expect = 0.38
Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 62 TILSIHHKVVTQNKRVSITFN-DHRSWFLHLRDVQETDRGWYMCQIN---TVPMTSQKGY 117
L +N R+ F+ R LH+RD Q D G Y C T + G
Sbjct: 46 INLFYLASGTKENGRLKSAFDSKERYSTLHIRDAQLEDSGTYFCAAEASNTNKVVFGTGT 105
Query: 118 LQVVVPPR 125
V+P
Sbjct: 106 RLQVLPNI 113
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 30.9 bits (68), Expect = 0.48
Identities = 19/185 (10%), Positives = 40/185 (21%), Gaps = 29/185 (15%)
Query: 88 FLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLEC 147
L ++ + D G Y C ++ L + + + L C
Sbjct: 52 TLTIQVKEFGDAGQYTCHKGGEVLSHS--LLLLHKKEDGIWSTDILKDQKEPKNKTFLRC 109
Query: 148 SAVGYPEPY-VAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASL 206
A Y + W + ++ + S + C A
Sbjct: 110 EAKNYSGRFTCWWLTTISTDLTFSVKSSRGS------------SDPQGVTCGAATLSAER 157
Query: 207 NYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFI 266
N++ + C + AV+ L
Sbjct: 158 VRGDNKEYE--------------YSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYTS 203
Query: 267 KVYVN 271
++
Sbjct: 204 SFFIR 208
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 29.5 bits (66), Expect = 0.52
Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 14/102 (13%)
Query: 31 VTATVGKEALMACVVENLREYK-VAWVKMITQTILSIHHKVVTQNKRVSITFN------- 82
V +G+ ++ R+ K +AW ++ + V++T
Sbjct: 9 VNGILGESVTFPVNIQEPRQVKIIAW--TSKTSVAYVTPGDSETAPVVTVTHRNYYERIH 66
Query: 83 -DHRSWFLHLRDVQETDRGWYMCQINT---VPMTSQKGYLQV 120
++ L + D++ D G Y INT T+++ LQ+
Sbjct: 67 ALGPNYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQI 108
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 30.8 bits (69), Expect = 0.54
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 121 VVPPRILLDRTSTDVVVREGTEVTLECSAVGY-PEPY-VAWRREDGKAINYNGELVPPML 178
PP + + ++S D + L C GY P + W DG+ ++ +
Sbjct: 5 FTPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLE-DGQVMDVDLSTASTTQ 63
Query: 179 T 179
Sbjct: 64 E 64
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 30.0 bits (67), Expect = 0.75
Identities = 12/110 (10%), Positives = 32/110 (29%), Gaps = 5/110 (4%)
Query: 73 QNKRVSITFN-DHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGY----LQVVVPPRIL 127
+++ T + S+ L Q +D Y C + + K + V P I
Sbjct: 58 EHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALFLASSSFSKLVFGQGTSLSVVPNIQ 117
Query: 128 LDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPM 177
+ + ++ + C + + + + ++
Sbjct: 118 NPEPAVYQLKDPRSQDSTLCLFTDFDSQINVPKTMESGTFITDKTVLDMK 167
Score = 28.5 bits (63), Expect = 2.2
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 131 TSTDVVVREGTEVTLECSAVGYPEPYVAW 159
T V + EG V L C+ P++ W
Sbjct: 7 TEGLVTLTEGLPVMLNCTYQSTYSPFLFW 35
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 28.9 bits (65), Expect = 0.77
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 76 RVSITFNDHRSWF-LHLRDVQETDRGWYMCQ-INTVPMTS--QKGYLQVVVPPRIL 127
R I +R F +++ D + D G Y+C I+ P + ++VV RIL
Sbjct: 61 RFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLHPKLKIEESPGAELVVTERIL 116
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC,
antigen recognition, TCR-PMHC, membrane receptor system;
2.75A {Mus musculus}
Length = 256
Score = 30.1 bits (68), Expect = 0.78
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 131 TSTDVVVREGTEVTLECSAVGYPEPYVAWRRED-GKA 166
V V EG + L C PY+ W + +
Sbjct: 9 PDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQG 45
Score = 28.1 bits (63), Expect = 3.6
Identities = 13/52 (25%), Positives = 15/52 (28%), Gaps = 11/52 (21%)
Query: 110 PMTSQKGYLQVVV--PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAW 159
S G + V PR V G VTL C Y+ W
Sbjct: 128 GGGSGGGGSEAAVTQSPRNK--------VTVTGENVTLSCRQTNS-HNYMYW 170
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 29.9 bits (67), Expect = 0.81
Identities = 31/162 (19%), Positives = 58/162 (35%), Gaps = 27/162 (16%)
Query: 29 ANVTATVGKEALMACVVENLREYKVAWVKMITQ------TILSIHHKVVTQNKRVSITFN 82
+ ++ G ++ + C V W + Q L +N R+ F+
Sbjct: 9 SALSLHEGTDSALRCNFTT-TMRSVQWFR---QNSRGSLISLFYLASGTKENGRLKSAFD 64
Query: 83 --DHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGY----------LQVVVPPRILLDR 130
+ R LH+RD Q D G Y C +T ++ QV V P+
Sbjct: 65 SKERRYSTLHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPA 124
Query: 131 TSTDVVVREGTEVTLECSAVG-YPEPY-VAWRREDGKAINYN 170
+ +++ GT + C YP+ ++ R K + ++
Sbjct: 125 KPSVFIMKNGT--NVACLVKDFYPKEVTISL-RSSKKIVEFD 163
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune
system/receptor, immune system/receptor/complex, TCR,
MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D
2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D
Length = 215
Score = 30.0 bits (67), Expect = 0.83
Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 5/96 (5%)
Query: 73 QNKRVSITFN-DHRSWFLHLRDVQETDRGWYMCQ--INTVPMTSQKGYLQVVVPPRILLD 129
+ KR++ F + LH+ Q D G Y+C + + KG ++ V P I
Sbjct: 57 KLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGAGSQGNLIFGKG-TKLSVKPNIQNP 115
Query: 130 RTSTDVVVREGTEVTLECSAVG-YPEPYVAWRREDG 164
+ + + C + V+ ++
Sbjct: 116 DPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSD 151
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_A*
Length = 116
Score = 28.8 bits (65), Expect = 0.86
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 131 TSTDVVVREGTEVTLECS-AVGYPEPYVAW 159
T T + V E T VT++C ++ W
Sbjct: 6 TQTSISVMEKTTVTMDCVYETQDSSYFLFW 35
Score = 26.1 bits (58), Expect = 7.4
Identities = 9/37 (24%), Positives = 11/37 (29%), Gaps = 1/37 (2%)
Query: 69 KVVTQNKRVSITFN-DHRSWFLHLRDVQETDRGWYMC 104
K S+ F S L + Q D Y C
Sbjct: 55 KENATVGHYSLNFQKPKSSIGLIITATQIEDSAVYFC 91
>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B,
IG-beta, BCR, immunoglobulin domain, protein binding;
3.20A {Homo sapiens}
Length = 134
Score = 29.3 bits (66), Expect = 0.90
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 18/95 (18%)
Query: 168 NYNGELVPPMLTIPNQLEGAFVS----QTVELHCHTEAFPASLNYWTNEKGD----MIIT 219
N G + P F++ TV++HC+ + ++++ ++ D +
Sbjct: 12 NPKGSACSRIWQSP-----RFIARKRGFTVKMHCYMNSASGNVSWLWKQEMDENPQQLK- 65
Query: 220 GDDYEDSR-LINGYSCHMTLKIRSILSHQFGSYRC 253
E R + TL I+ I G Y C
Sbjct: 66 ---LEKGRMEESQNESLATLTIQGIRFEDNGIYFC 97
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 29.6 bits (66), Expect = 0.90
Identities = 17/103 (16%), Positives = 29/103 (28%), Gaps = 7/103 (6%)
Query: 73 QNKRVSITFN-DHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYL-----QVVVPPRI 126
N+ S+ D +S L L D Y C + TS + V P I
Sbjct: 55 NNRMASLAIAEDRKSSTLILHRATLRDAAVYYCILPLAGGTSYGKLTFGQGTILTVHPNI 114
Query: 127 LLDRTSTDVVVREGTEVTLECSAVG-YPEPYVAWRREDGKAIN 168
+ + + C + V+ ++ I
Sbjct: 115 QNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYIT 157
Score = 28.8 bits (64), Expect = 2.1
Identities = 6/27 (22%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 134 DVVVREGTEVTLECSAVGY-PEPYVAW 159
+ E V L C+ Y+ W
Sbjct: 8 SMESNEEEPVHLPCNHSTISGTDYIHW 34
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 29.7 bits (66), Expect = 0.92
Identities = 19/183 (10%), Positives = 40/183 (21%), Gaps = 46/183 (25%)
Query: 119 QVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGE------ 172
+V V P+ + V + + CS K +
Sbjct: 4 EVHVRPK--------KLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDEQAQWKHYL 55
Query: 173 ------------------------------LVPPMLTIPNQLEGAFVSQTVELHCHTE-A 201
P + + Q V ++ + C
Sbjct: 56 VSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTV 115
Query: 202 FPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE 261
P +G+ + + + + T + ++ C+AV L
Sbjct: 116 EPLDSLTLFLFRGNETLHYETFGKAAPAPQ-EATATFNSTADREDGHRNFSCLAVLDLMS 174
Query: 262 TDG 264
G
Sbjct: 175 RGG 177
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist
peptide T-cell vaccines, transmembrane, immunoglobulin
domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D
2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D
3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 29.6 bits (66), Expect = 0.92
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 73 QNKRVSITFN-DHRSWFLHLRDVQETDRGWYMCQ 105
+ R++ + + L++ Q D Y+C
Sbjct: 57 TSGRLNASLDKSSGRSTLYIAASQPGDSATYLCA 90
Score = 29.2 bits (65), Expect = 1.2
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 134 DVVVREGTEVTLECSAVGYPEPYVAW-RREDGKA 166
+ V EG + L CS + W R++ GK
Sbjct: 9 ALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKG 42
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 28.8 bits (65), Expect = 1.1
Identities = 15/88 (17%), Positives = 23/88 (26%), Gaps = 15/88 (17%)
Query: 69 KVVTQNKRVSITFN-DHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYL-----QVVV 122
K S+ F S L + Q D Y C + S + + V
Sbjct: 55 KENATVGHYSLNFQKPKSSIGLIITATQIEDSAVYFCAMRGDYGGSGNKLIFGTGTLLSV 114
Query: 123 PPRI---------LLDRTSTDVVVREGT 141
P D D ++G+
Sbjct: 115 KPGSADDAKKDAAKKDDAKKDAAKKDGS 142
Score = 28.8 bits (65), Expect = 1.4
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 131 TSTDVVVREGTEVTLECS-AVGYPEPYVAW 159
T T + V E T VT++C ++ W
Sbjct: 6 TQTSISVMEKTTVTMDCVYETQDSSYFLFW 35
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 29.4 bits (66), Expect = 1.2
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 135 VVVREGTEVTLECSAVGYPEPYVAW-RREDGKA 166
+V G+ ++LEC+ G P + W R+ G+
Sbjct: 11 LVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRG 43
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus
musculus} PDB: 3c60_A
Length = 200
Score = 29.2 bits (65), Expect = 1.3
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 131 TSTDVVVREGTEVTLECSAVGYPEPYVAW 159
V + E + + C+ P + W
Sbjct: 6 MQGQVTLSENDFLFINCTYSTTGYPTLFW 34
Score = 28.4 bits (63), Expect = 2.0
Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 4/99 (4%)
Query: 73 QNKRVSITFN-DHRSWFLHLRDVQETDRGWYMC-QINTVPMTSQKGYLQVVVPPRILLDR 130
++ T++ S+ L VQE D Y C + G VVP D
Sbjct: 57 SSRGFEATYDKGTTSFHLQKTSVQEIDSAVYYCAANSGTYQRFGTGTKLQVVPNIQNPD- 115
Query: 131 TSTDVVVREGTEVTLECSAVG-YPEPYVAWRREDGKAIN 168
+ + + C + V+ ++ I
Sbjct: 116 PAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYIT 154
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 29.5 bits (66), Expect = 1.3
Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 9/50 (18%)
Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGY-PEPYVAWRREDGKA 166
LQV+ P + V V G L C+ P + W R G A
Sbjct: 4 LQVIQPDK--------SVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPA 45
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 29.1 bits (65), Expect = 1.5
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 135 VVVREGTEVTLECSAVGYPEPYVAW 159
+V G V L C P+++W
Sbjct: 11 RLVPRGQAVNLRCILKNSQYPWMSW 35
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 28.4 bits (63), Expect = 1.9
Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 135 VVVREGTEVTLECSAVGYPEPYVAW-RREDGKA 166
+ G +V L C +G +W +
Sbjct: 19 MDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSK 51
Score = 28.1 bits (62), Expect = 2.3
Identities = 19/122 (15%), Positives = 39/122 (31%), Gaps = 15/122 (12%)
Query: 18 KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVK-------MITQTIL---SIH 67
KP P + A +G++ + C V +W+ ++ S H
Sbjct: 6 KPQAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSH 65
Query: 68 HKVVTQNKRVSITFNDHRS-----WFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV 122
+K+ K S + L L + + G+Y C + + + + V+
Sbjct: 66 NKITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQ 125
Query: 123 PP 124
Sbjct: 126 KV 127
>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR
complex, immune system; 2.50A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D
Length = 211
Score = 28.5 bits (63), Expect = 2.0
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 131 TSTDVVVREGTEVTLECS-AVGYPEPYVAW 159
T++ V E +VTL+C Y+ W
Sbjct: 9 AQTEISVVEKEDVTLDCVYETRDTTYYLFW 38
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response,
immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1
PDB: 1h5b_C 1h5b_B
Length = 113
Score = 27.2 bits (61), Expect = 2.9
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 71 VTQNKRVSITFN--DHRSWFLHLRDVQETDRGWYMC 104
+N R+ F+ R LH+RD Q D G Y C
Sbjct: 53 TKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFC 88
>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*
Length = 112
Score = 27.3 bits (61), Expect = 3.1
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 135 VVVREGTEVTLECSAVGYPEPYVAW-RREDGK 165
+V G V L C P+++W +++ K
Sbjct: 11 RLVPRGQAVNLRCILKNSQYPWMSWYQQDLQK 42
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 28.1 bits (62), Expect = 3.4
Identities = 12/52 (23%), Positives = 16/52 (30%), Gaps = 9/52 (17%)
Query: 140 GTEVTLECSAVGYPEP---YVAWRREDGKAINYNGELVPPMLTIPNQLEGAF 188
+ L C V P V W RE G L P + + G +
Sbjct: 28 SLDAKLRCLVVNLPSDSSLSVTWTREKS------GNLRPDPMVLQEHFNGTY 73
Score = 26.9 bits (59), Expect = 8.7
Identities = 14/85 (16%), Positives = 24/85 (28%), Gaps = 4/85 (4%)
Query: 175 PPMLTI-PNQLEGAFVSQTVELHCHTEAFPASLNY---WTNEKGDMIITGDDYEDSRLIN 230
P L P ++S +L C P+ + WT EK +
Sbjct: 12 PIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNG 71
Query: 231 GYSCHMTLKIRSILSHQFGSYRCVA 255
YS + + + + C
Sbjct: 72 TYSASSAVPVSTQDWLSGERFTCTV 96
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 27.0 bits (60), Expect = 4.2
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 31 VTATVGKEALMACVVE--NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFN-DHRSW 87
VT G+ + CV+ + W + + + + +++ R T N +S+
Sbjct: 10 VTKETGESLTINCVLRDASYALGSTCWYR---KKSGEGNEESISKGGRYVETVNSGSKSF 66
Query: 88 FLHLRDVQETDRGWYMCQINT 108
L + D+ D G Y C +
Sbjct: 67 SLRINDLTVEDGGTYRCGLGV 87
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 26.8 bits (59), Expect = 4.8
Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 16/111 (14%)
Query: 18 KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVK---------------MITQT 62
KP P + A +G++ + C V +W+ M +
Sbjct: 1 KPQAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSH 60
Query: 63 ILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMT 112
+ + +K S + + + L L + + G+Y C I+ M
Sbjct: 61 NKITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMY 111
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 26.5 bits (58), Expect = 5.4
Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 5/52 (9%)
Query: 116 GYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
G R++ DV V +G + W +G+ +
Sbjct: 1 GSSGSSGTARLV--AGLEDVQVYDGEDAVFSLDLST--IIQGTWFL-NGEEL 47
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent
methyltransferase fold; 2.00A {Escherichia coli K12}
Length = 396
Score = 27.7 bits (62), Expect = 6.2
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 98 DR--GWYMCQINTVPMTSQKGY----LQVVVPPRILLDRTSTDVVVREGTEVT 144
DR + + Q+ + Q+ LQ + P + DR+ V +EG E+T
Sbjct: 118 DRFGNFLVLQLLSAGAEYQRAALISALQTLYPECSIYDRSDVAVRKKEGMELT 170
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 27.3 bits (60), Expect = 6.3
Identities = 13/62 (20%), Positives = 18/62 (29%), Gaps = 13/62 (20%)
Query: 101 WYMCQINTVPMTSQKGYLQVVV--PPRILLDRTSTDVVVREGTEVTLECSAV-GYPEPYV 157
+ I T S G V P V +G V L C + G+ +
Sbjct: 8 HFFKNIVTPRGGSGGGGGGAGVSQTPSNK--------VTEKGKYVELRCDPISGH--TAL 57
Query: 158 AW 159
W
Sbjct: 58 YW 59
>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold,
toxin-immune system complex; 2.95A {Rattus norvegicus}
Length = 125
Score = 26.4 bits (59), Expect = 7.1
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 136 VVREGTEVTLECSAVGYPEPYVAWRRED-GKA 166
V G +VTL C + W R+D G
Sbjct: 16 VAVTGEKVTLSCKQTNSYFNNMYWYRQDTGHE 47
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 26.4 bits (57), Expect = 7.6
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 76 RVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKG 116
R S+ + L L V D G Y CQ+ + ++ G
Sbjct: 83 RASVANLAAPT--LRLTHVHPQDGGRYWCQVAQWSIRTEFG 121
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF
domain, cyclic nucleotide phosphodiesterase hydrolase,
lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Length = 180
Score = 26.7 bits (59), Expect = 8.2
Identities = 5/70 (7%), Positives = 18/70 (25%), Gaps = 9/70 (12%)
Query: 209 WTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKV 268
W D +++ + +++ + + E +
Sbjct: 92 WVAHTKKFFNIPDVKKNNHFSDYLDKKTGYTTVNMM--------AIPITQGKEVLAVVMA 143
Query: 269 YVNLVDGDIF 278
+N ++ F
Sbjct: 144 -LNKLNASEF 152
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 26.0 bits (56), Expect = 9.6
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
Query: 32 TATVGKEALMACVVEN-LREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWF-L 89
+A G+ + C V+ + V W K + + S N F L
Sbjct: 25 SAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQL---YTSWEENRSVPVFVL 81
Query: 90 HLRDVQETDRGWYMCQIN 107
H + + +D G Y C N
Sbjct: 82 HFKPIHLSDNGSYSCSTN 99
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.423
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,980,247
Number of extensions: 293580
Number of successful extensions: 2389
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1775
Number of HSP's successfully gapped: 1010
Length of query: 314
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 221
Effective length of database: 4,105,140
Effective search space: 907235940
Effective search space used: 907235940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.2 bits)