BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15735
(574 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|V Chain V, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 306
Score = 242 bits (617), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 117/153 (76%), Positives = 129/153 (84%), Gaps = 5/153 (3%)
Query: 160 MERLLRLGSGMPGLSQAPPVSDGPVVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLG 219
MERL RL ++ +D DT E VYISS+ALLKMLKHGRAGVPMEVMGLMLG
Sbjct: 1 MERLQRLM-----MNSKVGSADTGRDDTKETVYISSIALLKMLKHGRAGVPMEVMGLMLG 55
Query: 220 EFVDEYTVRVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFG 279
EFVD+YTV V+DVFAMPQ+GTGVSVEAVD VFQAKM+DMLKQTGR +MVVGWYHSHPGFG
Sbjct: 56 EFVDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQTGRDQMVVGWYHSHPGFG 115
Query: 280 CWLSGVDINTQQSFEALSERAVAVVVDPIQSVK 312
CWLS VD+NTQ+SFE L+ RAVAVVVDPIQSVK
Sbjct: 116 CWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVK 148
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/148 (50%), Positives = 103/148 (69%)
Query: 9 GKVVIDAFRLINPNMMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNEL 68
GKVVIDAFRLI+ ++ EPRQTTSN G L K ++QALIHGLNRHYYS++I+Y K
Sbjct: 149 GKVVIDAFRLIDTGALINNLEPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAK 208
Query: 69 EQKMLLNLHKKTWMDGLSLQDYNEHCKLNEGTVNDMLELAKHYNKALEEEEKMSPEQLAI 128
E KML+NLHK+ W GL + DY E + N M+++A+ Y+K +EEE++++ E+L
Sbjct: 209 ETKMLMNLHKEQWQSGLKMYDYEEKEESNLAATKSMVKIAEQYSKRIEEEKELTEEELKT 268
Query: 129 KNVGKQDPKRHLEEKVDTLMTANIIQCL 156
+ VG+QDPK+HL E D + NI+ L
Sbjct: 269 RYVGRQDPKKHLSETADETLENNIVSVL 296
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 7/83 (8%)
Query: 281 WLSGVDINTQQSFEALSERAVAVVVDPIQSVKELAKHYNKALEEEEKMSPEQLAIKNVGK 340
W SG+ + +E E +A +S+ ++A+ Y+K +EEE++++ E+L + VG+
Sbjct: 221 WQSGLKM---YDYEEKEESNLAAT----KSMVKIAEQYSKRIEEEKELTEEELKTRYVGR 273
Query: 341 QDPKRHLEEKVDTLMTANIIQCL 363
QDPK+HL E D + NI+ L
Sbjct: 274 QDPKKHLSETADETLENNIVSVL 296
>pdb|4F7O|A Chain A, Crystal Structure Of Csn5
pdb|4F7O|B Chain B, Crystal Structure Of Csn5
Length = 257
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 77/121 (63%), Gaps = 3/121 (2%)
Query: 193 ISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVIDVFAMPQTGTGVSVEAVDPVFQ 252
IS+LALLK + H R+G +EV GL LG+ VD T + D FA+P GT V A ++
Sbjct: 57 ISALALLKXVXHARSGGNLEVXGLXLGK-VDGETXIIXDSFALPVEGTETRVNAQAAAYE 115
Query: 253 AKM--LDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQS 310
++ KQ GR E +GWYHSHPG+GCWLSG+D++TQ + E VAVV+DP ++
Sbjct: 116 YXAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQXLNQQFQEPFVAVVIDPTRT 175
Query: 311 V 311
+
Sbjct: 176 I 176
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 9 GKVVIDAFRLINPNMMVLGQEPRQ-TTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNE 67
GKV + AFR + P + T L ++ V + YY++ ++Y K+
Sbjct: 179 GKVNLGAFRTYPKGYKPPDEGPSEYQTIPLNKIEDFGVHC------KQYYALEVSYFKSS 232
Query: 68 LEQKMLLNLHKKTWMDGLS 86
L++K+L L K W++ LS
Sbjct: 233 LDRKLLELLWNKYWVNTLS 251
>pdb|4B4T|U Chain U, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 338
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 189 EQVYISSLALLKMLKHGRAGVPME---VMGLMLGEFVDEYTVRVIDVFAMP--QTGTGVS 243
E+V I+ L LL L H E +G++LG+ + T+RV + FA+P +
Sbjct: 6 EKVTIAPLVLLSALDHYERTQTKENKRCVGVILGD-ANSSTIRVTNSFALPFEEDEKNSD 64
Query: 244 VEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGF 278
V +D + M +M K+ E ++GWYHS P
Sbjct: 65 VWFLDHNYIENMNEMCKKINAKEKLIGWYHSGPKL 99
>pdb|2O96|A Chain A, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-177)
pdb|2O96|B Chain B, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-177)
Length = 178
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 17/129 (13%)
Query: 187 TAEQVYISSLALLKMLKH----GRAGVPMEVMGLMLGEFVDEYTVRVIDV---FAMP--Q 237
++V + L LL ++ H G+ G V+G++LG + +V+DV FA+P +
Sbjct: 6 AVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGS----WQKKVLDVSNSFAVPFDE 61
Query: 238 TGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALS 297
SV +D + M M K+ E +VGWYH+ P L DI + +
Sbjct: 62 DDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPK----LHKNDIAINELMKRYC 117
Query: 298 ERAVAVVVD 306
+V V++D
Sbjct: 118 PNSVLVIID 126
>pdb|2O95|A Chain A, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-186)
pdb|2O95|B Chain B, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-186)
Length = 187
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 17/129 (13%)
Query: 187 TAEQVYISSLALLKMLKH----GRAGVPMEVMGLMLGEFVDEYTVRVIDV---FAMP--Q 237
++V + L LL ++ H G+ G V+G++LG + +V+DV FA+P +
Sbjct: 6 AVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGS----WQKKVLDVSNSFAVPFDE 61
Query: 238 TGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALS 297
SV +D + M M K+ E +VGWYH+ P L DI + +
Sbjct: 62 DDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPK----LHKNDIAINELMKRYC 117
Query: 298 ERAVAVVVD 306
+V V++D
Sbjct: 118 PNSVLVIID 126
>pdb|2ZNR|A Chain A, Crystal Structure Of The Dub Domain Of Human Amsh-Lp
Length = 178
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 14/101 (13%)
Query: 211 MEVMGLMLGEFV-DEYTVRVIDVFAMPQTGTG---VSVEAVDPVFQAKMLDMLKQTGRPE 266
+E G++ G+ +E+T+ + V P+ G +E V+ +F Q
Sbjct: 33 IETCGILCGKLTHNEFTITHVIV---PKQSAGPDYCDMENVEELFNV-------QDQHDL 82
Query: 267 MVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDP 307
+ +GW H+HP +LS VD++T S++ + A+A+V P
Sbjct: 83 LTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSP 123
>pdb|3RZU|A Chain A, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|B Chain B, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|C Chain C, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|D Chain D, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|E Chain E, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|F Chain F, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|G Chain G, The Crystal Structure Of The Catalytic Domain Of Amsh
Length = 187
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 63/145 (43%), Gaps = 10/145 (6%)
Query: 183 PVVDTAEQVYISSLALLKMLKHGRAGVP--MEVMGLMLGEFV-DEYTVRVIDVFAMPQTG 239
P +D V + + L+ A +E G++ G+ + +E+T+ + +
Sbjct: 12 PTIDGLRHVVVPGRLCPQFLQLASANTARGVETCGILCGKLMRNEFTITHVLIPKQSAGS 71
Query: 240 TGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSER 299
+ E + +F L Q + + +GW H+HP +LS VD++T S++ +
Sbjct: 72 DYCNTENEEELF-------LIQDQQGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPE 124
Query: 300 AVAVVVDPIQSVKELAKHYNKALEE 324
+VA+V P K + LEE
Sbjct: 125 SVAIVCSPKFQETGFFKLTDHGLEE 149
>pdb|2ZNV|A Chain A, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
pdb|2ZNV|D Chain D, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
Length = 178
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 14/101 (13%)
Query: 211 MEVMGLMLGEFV-DEYTVRVIDVFAMPQTGTG---VSVEAVDPVFQAKMLDMLKQTGRPE 266
+ G++ G+ +E+T+ + V P+ G +E V+ +F Q
Sbjct: 33 IATCGILCGKLTHNEFTITHVIV---PKQSAGPDYCDMENVEELFNV-------QDQHDL 82
Query: 267 MVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDP 307
+ +GW H+HP +LS VD++T S++ + A+A+V P
Sbjct: 83 LTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSP 123
>pdb|3RZV|A Chain A, The Crystal Structure Of A E280a Mutant Of The Catalytic
Domain Of Amsh
Length = 211
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 267 MVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKELAKHYNKALEE 324
+ +GW H+HP +LS VD++T S++ + +VA+V P K + LEE
Sbjct: 116 ITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKFQETGFFKLTDHGLEE 173
>pdb|2KKS|A Chain A, Solution Structure Of Protein Dsy2949 From
Desulfitobacterium Hafniense. Northeast Structural
Genomics Consortium Target Dhr27
Length = 146
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 191 VYISSLALLKMLKHGRAGVPMEVMGLMLG--EFVDEYTVRVIDVFAMPQTGTGVSVEAVD 248
+ ++ + +ML H R +P E GL+ G + D + RV + + Q+ S +D
Sbjct: 2 ITLTKKQMEEMLAHARQALPNEACGLLGGRRDGDDRWVERVYPLNNLDQSPEHFS---MD 58
Query: 249 PVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVD 286
P Q + +++ G +++G +HSHP S D
Sbjct: 59 PREQLTAVKDMRKNG--WVMLGNFHSHPATPARPSAED 94
>pdb|3V6Z|E Chain E, Crystal Structure Of Hepatitis B Virus E-antigen
pdb|3V6Z|F Chain F, Crystal Structure Of Hepatitis B Virus E-antigen
Length = 159
Score = 32.7 bits (73), Expect = 0.56, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 281 WLSGVDINTQQSFEALSERAVAVVVDPIQSVKEL----AKHYNKALEEEEKMSPEQLAIK 336
WL G+DI+ + F A E + D SV++L A Y ALE E SP A++
Sbjct: 7 WLWGMDIDPYKEFGATVELLSFLPSDFFPSVRDLLDTAAALYRDALESPEHASPHHTALR 66
>pdb|2FXO|A Chain A, Structure Of The Human Beta-myosin S2 Fragment
pdb|2FXO|B Chain B, Structure Of The Human Beta-myosin S2 Fragment
pdb|2FXO|C Chain C, Structure Of The Human Beta-myosin S2 Fragment
pdb|2FXO|D Chain D, Structure Of The Human Beta-myosin S2 Fragment
Length = 129
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 13/93 (13%)
Query: 64 RKNELEQKMLLNLHKKTWM------DGLSLQDYNEHCKLNEGTVNDMLEL---AKHYNKA 114
R+ ELE+KM+ L +K + + +L D E C + + + ++L K NK
Sbjct: 35 RRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERC---DQLIKNKIQLEAKVKEMNKR 91
Query: 115 LEEEEKMSPEQLAIKNVGKQDPKRHLEEKVDTL 147
LE+EE+M+ E L K +D L+ +D L
Sbjct: 92 LEDEEEMNAE-LTAKKRKLEDECSELKRDIDDL 123
>pdb|2FXM|A Chain A, Structure Of The Human Beta-Myosin S2 Fragment
pdb|2FXM|B Chain B, Structure Of The Human Beta-Myosin S2 Fragment
Length = 129
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 13/93 (13%)
Query: 64 RKNELEQKMLLNLHKKTWM------DGLSLQDYNEHCKLNEGTVNDMLEL---AKHYNKA 114
R+ ELE+KM+ L +K + + +L D E C + + + ++L K N+
Sbjct: 35 RRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERC---DQLIKNKIQLEAKVKEMNER 91
Query: 115 LEEEEKMSPEQLAIKNVGKQDPKRHLEEKVDTL 147
LE+EE+M+ E L K +D L+ +D L
Sbjct: 92 LEDEEEMNAE-LTAKKRKLEDECSELKRDIDDL 123
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 251 FQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQS 310
F + L L TG+P+ + PGF + N + +SE AV ++PIQ
Sbjct: 126 FHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFN---NVEDLRRKMSEDVCAVFLEPIQG 182
Query: 311 VKELAKHYNKALEEEEKMSPEQLAI 335
+ + LEE K+ E A+
Sbjct: 183 ESGIVPATKEFLEEARKLCDEYDAL 207
>pdb|2XD7|A Chain A, Crystal Structure Of The Macro Domain Of Human Core
Histone H2a
pdb|2XD7|B Chain B, Crystal Structure Of The Macro Domain Of Human Core
Histone H2a
pdb|2XD7|C Chain C, Crystal Structure Of The Macro Domain Of Human Core
Histone H2a
pdb|2XD7|D Chain D, Crystal Structure Of The Macro Domain Of Human Core
Histone H2a
Length = 193
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 14 DAFRLINPNMMVLGQEPRQTTSNLGHLQKHSVQALIH 50
D F +++ +VLGQ+ T S++ H+ V+ ++H
Sbjct: 5 DGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVH 41
>pdb|3AYR|A Chain A, Gh5 Endoglucanase Egla From A Ruminal Fungus
Length = 376
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 59/156 (37%), Gaps = 30/156 (19%)
Query: 10 KVVIDAFRLINPNMMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELE 69
K D F+++ N + + P + + G + + L R + + Y+
Sbjct: 62 KTTEDMFKVLIDNQFNVFRIPTTWSGHFGEAPDYKIDE--KWLKRVHEVVDYPYKNGAF- 118
Query: 70 QKMLLNLHKKTWMDGLS--------------------LQDYNEHC---KLNEGTVNDM-L 105
++LNLH +TW S +DY+EH LNE ND +
Sbjct: 119 --VILNLHHETWNHAFSETLDTAKEILEKIWSQIAEEFKDYDEHLIFEGLNEPRKNDTPV 176
Query: 106 ELAKHYNKALEEEEKMSPEQL-AIKNVGKQDPKRHL 140
E + + M+ L +++ G +PKRHL
Sbjct: 177 EWTGGDQEGWDAVNAMNAVFLKTVRSAGGNNPKRHL 212
>pdb|1X9J|A Chain A, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|B Chain B, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|C Chain C, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|D Chain D, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|E Chain E, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|F Chain F, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|G Chain G, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
pdb|1X9J|H Chain H, Structure Of Butyrate Kinase 2 Reveals Both Open- And
Citrate-Induced Closed Conformations: Implications For
Substrate-Induced Fit Conformational Changes
Length = 375
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 58/148 (39%), Gaps = 46/148 (31%)
Query: 179 VSDGPVVD-TAEQVYISSLALLKMLKHGRAGVPMEVMGLMLG-EFVDEYTVRVIDVFAMP 236
VS G ++D VY+ ++K LK G+ G +G ++ F E
Sbjct: 72 VSRGGLLDPIPGGVYLVDGLMIKTLKSGKNGEHASNLGAIIAHRFSSE------------ 119
Query: 237 QTGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEAL 296
TGV VDPV +M D+ + +G HP + + F AL
Sbjct: 120 ---TGVPAYVVDPVVVDEMEDVARVSG-----------HPNY---------QRKSIFHAL 156
Query: 297 SERAVAVVVDPIQSVKELAKHYNKALEE 324
+++ VA KE+A+ NK EE
Sbjct: 157 NQKTVA---------KEVARMMNKRYEE 175
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 13/93 (13%)
Query: 64 RKNELEQKMLLNLHKKTWM------DGLSLQDYNEHCKLNEGTVNDMLEL---AKHYNKA 114
R+ ELE+KM+ L +K + + +L D E C + + + ++L K N+
Sbjct: 879 RRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERC---DQLIKNKIQLEAKVKEMNER 935
Query: 115 LEEEEKMSPEQLAIKNVGKQDPKRHLEEKVDTL 147
LE+EE+M+ E L K +D L+ +D L
Sbjct: 936 LEDEEEMNAE-LTAKKRKLEDECSELKRDIDDL 967
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 13/93 (13%)
Query: 64 RKNELEQKMLLNLHKKTWM------DGLSLQDYNEHCKLNEGTVNDMLEL---AKHYNKA 114
R+ ELE+KM+ L +K + + +L D E C + + + ++L K N+
Sbjct: 879 RRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERC---DQLIKNKIQLEAKVKEMNER 935
Query: 115 LEEEEKMSPEQLAIKNVGKQDPKRHLEEKVDTL 147
LE+EE+M+ E L K +D L+ +D L
Sbjct: 936 LEDEEEMNAE-LTAKKRKLEDECSELKRDIDDL 967
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,595,301
Number of Sequences: 62578
Number of extensions: 669158
Number of successful extensions: 1537
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1514
Number of HSP's gapped (non-prelim): 39
length of query: 574
length of database: 14,973,337
effective HSP length: 104
effective length of query: 470
effective length of database: 8,465,225
effective search space: 3978655750
effective search space used: 3978655750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)