Query psy15735
Match_columns 574
No_of_seqs 511 out of 1559
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 20:04:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15735.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15735hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_V 26S proteasome regulato 100.0 1.1E-40 3.9E-45 344.7 17.1 206 160-370 1-303 (306)
2 4b4t_V 26S proteasome regulato 100.0 2.4E-36 8.2E-41 312.4 2.9 157 7-163 147-303 (306)
3 4e0q_A COP9 signalosome comple 99.9 6E-24 2E-28 196.2 14.5 126 187-318 4-136 (141)
4 2znr_A AMSH-like protease; met 99.9 1.2E-24 4.1E-29 208.4 10.1 140 186-332 6-153 (178)
5 2o95_A 26S proteasome non-ATPa 99.9 1.8E-23 6.2E-28 201.6 15.1 122 186-312 5-132 (187)
6 2kcq_A MOV34/MPN/PAD-1 family; 99.9 2.5E-23 8.5E-28 194.5 4.5 144 191-346 1-148 (153)
7 2kks_A Uncharacterized protein 99.9 1.1E-22 3.7E-27 188.7 7.9 136 191-337 2-137 (146)
8 3rzv_A STAM-binding protein; u 99.9 7.7E-22 2.6E-26 192.9 12.2 144 184-333 37-187 (211)
9 4b4t_U RPN8, 26S proteasome re 99.7 7.7E-17 2.6E-21 168.8 14.6 124 187-315 4-133 (338)
10 1oi0_A AF2198, hypothetical pr 99.7 7.3E-17 2.5E-21 145.4 8.3 100 189-309 2-101 (124)
11 2xov_A Rhomboid protease GLPG; 99.0 4E-10 1.4E-14 107.6 7.7 127 341-492 43-181 (181)
12 2og4_A PRE-mRNA-splicing facto 98.8 3.9E-09 1.3E-13 104.8 7.2 129 187-322 36-172 (254)
13 2nr9_A Protein GLPG homolog; i 98.8 1.7E-09 5.9E-14 104.5 4.4 126 341-492 48-186 (196)
14 2p8r_A PRP8, PRE-mRNA-splicing 98.7 2.5E-08 8.7E-13 99.9 7.7 126 187-321 37-174 (273)
15 3sbg_A PRE-mRNA-splicing facto 97.7 0.00012 4E-09 78.7 9.7 126 188-322 348-483 (565)
16 2qlc_A DNA repair protein RADC 76.2 31 0.0011 30.4 11.5 90 194-294 7-96 (126)
17 1g70_B RSG-1.2 peptide; peptid 59.9 2.7 9.4E-05 26.1 0.7 14 558-571 6-19 (26)
18 3c3g_A Alpha/beta peptide with 45.2 25 0.00085 23.7 3.6 29 138-168 3-31 (33)
19 2bni_A General control protein 41.8 32 0.0011 23.4 3.7 29 138-168 4-32 (34)
20 2oxj_A Hybrid alpha/beta pepti 38.5 39 0.0013 22.9 3.8 29 138-168 4-32 (34)
21 3m48_A General control protein 37.5 44 0.0015 22.6 3.8 29 138-168 3-31 (33)
22 3c3f_A Alpha/beta peptide with 37.1 39 0.0013 22.9 3.6 29 138-168 4-32 (34)
23 1uo4_A General control protein 36.3 50 0.0017 22.4 4.0 29 138-168 4-32 (34)
24 2hy6_A General control protein 31.1 25 0.00086 23.9 1.9 28 138-167 4-31 (34)
25 2wq1_A General control protein 24.0 41 0.0014 22.7 1.9 28 138-167 3-30 (33)
26 1kd8_B GABH BLL, GCN4 acid bas 21.8 47 0.0016 22.8 1.9 27 138-166 4-30 (36)
27 2jx5_A GLUB(S27A); ubiquitin, 20.2 54 0.0018 24.8 2.1 13 5-17 49-61 (69)
28 1kd8_A GABH AIV, GCN4 acid bas 20.1 53 0.0018 22.6 1.9 26 138-165 4-29 (36)
No 1
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-40 Score=344.65 Aligned_cols=206 Identities=67% Similarity=1.042 Sum_probs=175.6
Q ss_pred HHHHhhhcCCCCCCCCCCCCCCCCCCCCccEEEECHHHHHHHHHHHhcCCCceEEEEeeeEEcCCceEEEEEEEeCCccc
Q psy15735 160 MERLLRLGSGMPGLSQAPPVSDGPVVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVIDVFAMPQTG 239 (574)
Q Consensus 160 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~V~Is~~vllkIl~Ha~~~~p~Ev~GlLlG~~~~~~~l~Vt~~fp~p~~~ 239 (574)
|++++|+++.. ++|. .+.+.++++++|+|+++|++||++||+++.|.||||+|+|.+.++++++|+||||+|+.+
T Consensus 1 ~~~~~~~~~~~-~~~~----~~~~~~~~~~~V~is~lallkm~~Ha~~~~~~eV~GlLlG~~~~~~~v~Vt~~f~~P~~~ 75 (306)
T 4b4t_V 1 MERLQRLMMNS-KVGS----ADTGRDDTKETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSG 75 (306)
T ss_dssp ---------------------CCCCCSSCCEEEECHHHHHHHHHHTCSCSSSCCEEEEEEEEETTTEEEEEEEECCCCEE
T ss_pred ChhHHHhhhcc-CCCC----CCCCCCCCCCEEEEeHHHHHHHHHHhcCCCCceEEEEEeeEEcCCeEEEEEEEEeCCcCC
Confidence 57788876532 2332 256778999999999999999999999999999999999987777799999999999999
Q ss_pred CCCCcccccHHHHHHHHHHHHhcCCCCcEEEEEccCCCCCCcCCHHHHHHHHHHHhcCCCeEEEEEcCCCCch-------
Q psy15735 240 TGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVK------- 312 (574)
Q Consensus 240 ~~~~~~~idp~~q~~ml~~lr~~g~~~~vVGWYHSHP~~~~~pS~~Di~tq~~yQ~~~p~~V~LIvDp~~s~~------- 312 (574)
++++++++|+.||.+|+++++++|+++++||||||||+++||||..||++|..||.+.+++|+||+||.++.+
T Consensus 76 ~~~~v~~~d~~y~~~m~~~~~~v~~~~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~t~~G~~~i~A 155 (306)
T 4b4t_V 76 TGVSVEAVDDVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVKGKVVIDA 155 (306)
T ss_dssp SSSCEECCCHHHHHHHHHHHHHHSCCCCCSEEEEECCSSSCCCCHHHHHHHHHHHHHCSSCEEEEECSSSSSSCSSCEEE
T ss_pred CCCchhcCCHHHHHHHHHHHHHhCCCcceeeEEecCCCCCCcCCHHHHHHHHHHHhcCCCcEEEEECCCcCCCCceeeeE
Confidence 9999988999999999999999999999999999999999999999999999999999999999999977643
Q ss_pred --------------------------------------------------------------------------------
Q psy15735 313 -------------------------------------------------------------------------------- 312 (574)
Q Consensus 313 -------------------------------------------------------------------------------- 312 (574)
T Consensus 156 fr~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~yy~l~i~~~ks~le~~~L~~L~~~~w~~~l~~~~~~~~~~ 235 (306)
T 4b4t_V 156 FRLIDTGALINNLEPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLKMYDYEEKEE 235 (306)
T ss_dssp EECCHHHHHHCCCCCSCC----------------------CEEECSCCCCCSSCTHHHHHHHHC----------CHHHHH
T ss_pred EEecCccccccccCcccccccccccCchhhhhhhccccceEEEeeeEEEeCcHHHHHHHHHHhcccccccccCcHHHHHH
Confidence
Q ss_pred ----------hHHHHHHHHhhhccCCCccchhcccccCCccchhhHHHHHHhhhhhHHHHHhhccccc
Q psy15735 313 ----------ELAKHYNKALEEEEKMSPEQLAIKNVGKQDPKRHLEEKVDTLMTANIIQCLGGKLIEP 370 (574)
Q Consensus 313 ----------rLs~~y~~~~~ee~~ft~EeL~v~~vg~~DP~~~Le~~v~~fm~~nI~~~l~~mL~E~ 370 (574)
.+..+|.+.++++.+.+++++..+++++.||++||++.++.+|++||.++|++|++..
T Consensus 236 ~~~~~i~~m~~~~~~y~k~v~~e~~~~~~~l~~~~vgk~dp~~~l~~~~~~l~~~ni~~~l~~~~~~~ 303 (306)
T 4b4t_V 236 SNLAATKSMVKIAEQYSKRIEEEKELTEEELKTRYVGRQDPKKHLSETADETLENNIVSVLTAGVNSV 303 (306)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHTCSCSSCCSSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCCHHHHHhhccCccChHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3456777777777777889999999999999999999999999999999999998643
No 2
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-36 Score=312.36 Aligned_cols=157 Identities=48% Similarity=0.807 Sum_probs=122.7
Q ss_pred CcCcEEEecccccCccccccCCCCcccccccCccCcchHHHHHhhcCCcceeeEEeeeCCHHHHHHHhhcccCCccCCCC
Q psy15735 7 QLGKVVIDAFRLINPNMMVLGQEPRQTTSNLGHLQKHSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKTWMDGLS 86 (574)
Q Consensus 7 ~kgkvvidafr~i~~~~~~~~~eprqttsn~g~l~kp~~~a~~~gl~r~yys~~i~~~~~~~e~~ml~~l~k~~w~~~l~ 86 (574)
.+||+.|.|||++++.....+++|||+|||.|++.+|+++++.||++++|||++|+|+|+++|++||.+|+|+.|.++|.
T Consensus 147 ~~G~~~i~Afr~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~yy~l~i~~~ks~le~~~L~~L~~~~w~~~l~ 226 (306)
T 4b4t_V 147 VKGKVVIDAFRLIDTGALINNLEPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLK 226 (306)
T ss_dssp SSCSSCEEEEECCHHHHHHCCCCCSCC----------------------CEEECSCCCCCSSCTHHHHHHHHC-------
T ss_pred CCCceeeeEEEecCccccccccCcccccccccccCchhhhhhhccccceEEEeeeEEEeCcHHHHHHHHHHhcccccccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHhHHhhhhcCCCChhhhHHHHHHHHhhhhhHHHHhhHHHHH
Q psy15735 87 LQDYNEHCKLNEGTVNDMLELAKHYNKALEEEEKMSPEQLAIKNVGKQDPKRHLEEKVDTLMTANIIQCLDRNMERL 163 (574)
Q Consensus 87 ~~~~~~~~~~n~~~~~~~~~l~~~y~~~~~ee~~~~~~~~~~~~vgk~d~k~hl~~~~~~~~~~ni~q~l~~ml~~l 163 (574)
+.+|.++.+.|.+.+++|++++++|.|.|+||++++++|+++++|||+||||||++.++++|++||+|+||+|+|++
T Consensus 227 ~~~~~~~~~~~~~~i~~m~~~~~~y~k~v~~e~~~~~~~l~~~~vgk~dp~~~l~~~~~~l~~~ni~~~l~~~~~~~ 303 (306)
T 4b4t_V 227 MYDYEEKEESNLAATKSMVKIAEQYSKRIEEEKELTEEELKTRYVGRQDPKKHLSETADETLENNIVSVLTAGVNSV 303 (306)
T ss_dssp ---CHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHTCSCSSCCSSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCHHHHHhhccCccChHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986
No 3
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=99.91 E-value=6e-24 Score=196.21 Aligned_cols=126 Identities=18% Similarity=0.356 Sum_probs=103.9
Q ss_pred CccEEEECHHHHHHHHHHHhc-----CCCceEEEEeeeEEcCCceEEEEEEEeCCcccCCCCcccccHHHHHHHHHHHHh
Q psy15735 187 TAEQVYISSLALLKMLKHGRA-----GVPMEVMGLMLGEFVDEYTVRVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQ 261 (574)
Q Consensus 187 ~~~~V~Is~~vllkIl~Ha~~-----~~p~Ev~GlLlG~~~~~~~l~Vt~~fp~p~~~~~~~~~~idp~~q~~ml~~lr~ 261 (574)
+..+|+|+|+|+++|++|+.+ +.+.+|+|+|+|...+ ++++|+||||+|..+++.++ .+|.+|+.+|++++++
T Consensus 4 ~~~~V~ihplvll~I~dH~~R~~~~~g~~~~V~G~LLG~~~~-~~veV~nsF~~p~~~~~~~~-~~d~~y~~~m~~~~k~ 81 (141)
T 4e0q_A 4 MSVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKG-RNIEIMNSFELKTDVIGDET-VINKDYYNKKEQQYKQ 81 (141)
T ss_dssp -CEEEEECHHHHHHHHHHHHCC------CCEEEEEEEEEEET-TEEEEEEEEECCEEEETTEE-EECHHHHHHHHHHHHH
T ss_pred CcEEEEEecHHHHHHHHHHhhhcccCCCCcEEEEEEEEEEeC-CEEEEEEEEEecccCCCCce-eecHHHHHHHHHHHHH
Confidence 457999999999999999955 3578999999999854 69999999999998776665 5899999999999999
Q ss_pred cCCCCcEEEEEccCCCCCCcCCHHHHHHHHHHHhcCCCeEEEEEcCCCCch-hHH-HHH
Q psy15735 262 TGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVK-ELA-KHY 318 (574)
Q Consensus 262 ~g~~~~vVGWYHSHP~~~~~pS~~Di~tq~~yQ~~~p~~V~LIvDp~~s~~-rLs-~~y 318 (574)
+++++++|||||||| .++..|+.+|..|++.++++|+|++||..+.+ +|+ ..|
T Consensus 82 v~~~e~iVGWY~s~~----~~~~~d~~i~~~~~~~~~~pV~L~~Dp~~~~~g~Lp~~ay 136 (141)
T 4e0q_A 82 VFSDLDFIGWYTTGD----NPTADDIKIQRQIAAINECPIMLQLNPLSRSVDHLPLKLF 136 (141)
T ss_dssp HSTTCEEEEEEEEEC-----------CHHHHHHHTTCCCEEEEESCSCCCCTTHHHHHH
T ss_pred hCCCccEEEEEeCCC----CCCcchHHHHHHHHHHCCCCEEEEECCCccCCCeEEEEEE
Confidence 999999999999998 47888999999999999999999999998774 455 444
No 4
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=99.91 E-value=1.2e-24 Score=208.39 Aligned_cols=140 Identities=19% Similarity=0.292 Sum_probs=116.6
Q ss_pred CCccEEEECHHHHHHHHHHHhcCCC--ceEEEEeeeEEcCCceEEEEEEEeCCcccCCCCcccccHHHHHHHHHHHHhcC
Q psy15735 186 DTAEQVYISSLALLKMLKHGRAGVP--MEVMGLMLGEFVDEYTVRVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQTG 263 (574)
Q Consensus 186 ~~~~~V~Is~~vllkIl~Ha~~~~p--~Ev~GlLlG~~~~~~~l~Vt~~fp~p~~~~~~~~~~idp~~q~~ml~~lr~~g 263 (574)
.++.+|.|++.++.+|++||+++.| .|+||+|+|...+ +..+|+++|++|+.+++++++..+++.+.++ +++
T Consensus 6 ~~~~~v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~~~~-~~~~V~~v~~~pq~~t~~~~~~~~~~e~~~~---~~~-- 79 (178)
T 2znr_A 6 EGLRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTH-NEFTITHVIVPKQSAGPDYCDMENVEELFNV---QDQ-- 79 (178)
T ss_dssp CSCCCEEEETTHHHHHHHHHHHHHTTTCCCEEEEEEEEET-TEEEEEEEEECCEEEETTEEEECCHHHHHHH---HHH--
T ss_pred CCcEEEEECHHHHHHHHHHHHhCCCCCceEEEEEeeEecC-CCeEEEEEEeCCcCCCCCeeccCCHHHHHHH---HHh--
Confidence 4578999999999999999998654 7999999999865 4789999999999988888876777654443 444
Q ss_pred CCCcEEEEEccCCCCCCcCCHHHHHHHHHHHhcCCCeEEEEEcCCCCch---hHHHHHHHH---hhhccCCCccc
Q psy15735 264 RPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVK---ELAKHYNKA---LEEEEKMSPEQ 332 (574)
Q Consensus 264 ~~~~vVGWYHSHP~~~~~pS~~Di~tq~~yQ~~~p~~V~LIvDp~~s~~---rLs~~y~~~---~~ee~~ft~Ee 332 (574)
+++++||||||||+.+|+||.+|+++|.+||++.|++++||+||.++.. ||++.-.++ ++ +..|+|+.
T Consensus 80 ~~l~~vGwyHSHP~~~~~pS~~Dv~tq~~yq~~~~~~v~iIvsp~~~~~~afrl~~~g~~~~~~~~-~~~f~p~~ 153 (178)
T 2znr_A 80 HDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHKDTGIFRLTNAGMLEVSACK-KKGFHPHT 153 (178)
T ss_dssp HTCEEEEEEEECSSSCSCCCHHHHHHHHHHHHHCTTCEEEEEEGGGTEEEEEEECHHHHHHHHHCC-CCSSCCCC
T ss_pred CCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhcCCEEEEEEcCCCCcceEEEEECCcEeeecccC-CCCcccCC
Confidence 4589999999999999999999999999999999999999999987643 677665666 43 44577765
No 5
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=99.90 E-value=1.8e-23 Score=201.55 Aligned_cols=122 Identities=26% Similarity=0.432 Sum_probs=106.9
Q ss_pred CCccEEEECHHHHHHHHHHHhc----CCCceEEEEeeeEEcCCceEEEEEEEeCCcccCCC--CcccccHHHHHHHHHHH
Q psy15735 186 DTAEQVYISSLALLKMLKHGRA----GVPMEVMGLMLGEFVDEYTVRVIDVFAMPQTGTGV--SVEAVDPVFQAKMLDML 259 (574)
Q Consensus 186 ~~~~~V~Is~~vllkIl~Ha~~----~~p~Ev~GlLlG~~~~~~~l~Vt~~fp~p~~~~~~--~~~~idp~~q~~ml~~l 259 (574)
.+.++|+|+++|++||++||.+ +.|.||||+|+|...+ ++++|+||||+|+..++. +...+|++|+.+|.+++
T Consensus 5 ~~~~~V~i~plvllkI~~H~~r~~~~~~~~~V~G~LLG~~~~-~~v~V~~~f~lp~~~~~~~~~~~~~d~ey~~~m~~~~ 83 (187)
T 2o95_A 5 LAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQK-KVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMF 83 (187)
T ss_dssp CSCSEEEECHHHHHHHHHHHHHHHHTTCCSCCEEEEEEEESS-SEEEEEEEEEECEEECSSCTTSEEECHHHHHHHHHHH
T ss_pred CCCCEEEEchHHHHHHHHHHhhhcccCCCcEEEEEEEEEEcC-CEEEEEEEEEeCCcccCCCcchhhcCHHHHHHHHHHH
Confidence 4568999999999999999865 4799999999999864 699999999999986644 34468999999999999
Q ss_pred HhcCCCCcEEEEEccCCCCCCcCCHHHHHHHHHHHhcCCCeEEEEEcCCCCch
Q psy15735 260 KQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVK 312 (574)
Q Consensus 260 r~~g~~~~vVGWYHSHP~~~~~pS~~Di~tq~~yQ~~~p~~V~LIvDp~~s~~ 312 (574)
+++++++++||||||||.. |..|+.+|..||..++++++||+||.++.+
T Consensus 84 ~~v~~~~~iVGWY~s~~~~----s~~d~~i~~~~~~~~~~~v~Livd~~~~~~ 132 (187)
T 2o95_A 84 KKVNARERIVGWYHTGPKL----HKNDIAINELMKRYCPNSVLVIIDVKPKDL 132 (187)
T ss_dssp HTTSSSCEEEEEEECCSSC----CTTHHHHHHHHTTTCTTCEEEEECCCTTC-
T ss_pred HHhCCCCCEEEEEcCCCcC----CcccHHHHHHHHhcCCCCEEEEECCCCCCC
Confidence 9999999999999999965 677888898999999999999999987744
No 6
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=99.87 E-value=2.5e-23 Score=194.51 Aligned_cols=144 Identities=19% Similarity=0.194 Sum_probs=115.6
Q ss_pred EEECHHHHHHHHHHHhcCCCceEEEEeeeEEcCCceEEEEEEEeCCcc--cCCCCcccccHHHHHHHHHHHHhcCCCCcE
Q psy15735 191 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVIDVFAMPQT--GTGVSVEAVDPVFQAKMLDMLKQTGRPEMV 268 (574)
Q Consensus 191 V~Is~~vllkIl~Ha~~~~p~Ev~GlLlG~~~~~~~l~Vt~~fp~p~~--~~~~~~~~idp~~q~~ml~~lr~~g~~~~v 268 (574)
+.|++.++.+|++||+++.|.|+||+|+|...+++++.|+++||++|. .+....+.+||+++.++.+.+++.| +.+
T Consensus 1 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~~~~~v~~~~p~~n~~~~~~~~~f~~dp~~~~~~~~~~~~~g--~~i 78 (153)
T 2kcq_A 1 MKTTPDILDQIRVHGADAYPEEGCGFLLGTVTDDGDNRVAALHRATNRRSEQRTRRYELTADDYRAADAAAQEQG--LDV 78 (153)
T ss_dssp CBCCHHHHHHHHHHHHHHTTSCCCEEEEEEECTTSCEEEEEEEESSCCCCCCCSCCSSCCCCSHHHHHHHHHHHT--CEE
T ss_pred CEeCHHHHHHHHHHHHhcCCcceEEEEEEeeccCCCeEEEEEEECCCCCCCCCCcEEEECHHHHHHHHHHHHHCC--CeE
Confidence 368999999999999999999999999999752457889999999997 4444566799999999999988866 799
Q ss_pred EEEEccCCCCCCcCCHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHHHHhh--hccCCCccchhcccccCCccchh
Q psy15735 269 VGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKELAKHYNKALE--EEEKMSPEQLAIKNVGKQDPKRH 346 (574)
Q Consensus 269 VGWYHSHP~~~~~pS~~Di~tq~~yQ~~~p~~V~LIvDp~~s~~rLs~~y~~~~~--ee~~ft~EeL~v~~vg~~DP~~~ 346 (574)
||||||||+++++||.+|+..+ ..++++++|+++..+.. ..++.|.. .+++|+++++.+ +...+|-.|
T Consensus 79 vG~yHSHP~~~~~PS~~D~~~~-----~~~~~~~lIvs~~~~~~---~~~~af~~~~~~g~~~e~~i~v--~~~~~~~~~ 148 (153)
T 2kcq_A 79 VGVYHSHPDHPARPSATDLEEA-----TFPGFTYVIVSVRDGAP---EALTAWALAPDRSEFHREDIVR--PDPEAPLEH 148 (153)
T ss_dssp EEEEEECSSSSSSCCHHHHHTC-----CCTTSEEEEEEEETTEE---EEEEEEEECTTCSCEEEECCBC--CCSSCCCCS
T ss_pred EEEEeCCCCCCCCCCHHHHHhh-----hcCCCeEEEEECCCCCc---cEEEEEEEeCCCCcEEEEEEEE--ecCCCcchh
Confidence 9999999999999999999743 35899999999865421 23555544 566888888876 455566543
No 7
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=99.87 E-value=1.1e-22 Score=188.70 Aligned_cols=136 Identities=19% Similarity=0.280 Sum_probs=114.9
Q ss_pred EEECHHHHHHHHHHHhcCCCceEEEEeeeEEcCCceEEEEEEEeCCcccCCCCcccccHHHHHHHHHHHHhcCCCCcEEE
Q psy15735 191 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVG 270 (574)
Q Consensus 191 V~Is~~vllkIl~Ha~~~~p~Ev~GlLlG~~~~~~~l~Vt~~fp~p~~~~~~~~~~idp~~q~~ml~~lr~~g~~~~vVG 270 (574)
|.|++.++.+|++||+++.|.|+||+|+|...+ .+..|++++|+||...++..+.+||.++.++.+.+++.| +.+||
T Consensus 2 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~-~~~~v~~~~p~~n~~~~~~~f~~dp~~~~~~~~~~~~~g--~~ivG 78 (146)
T 2kks_A 2 ITLTKKQMEEMLAHARQALPNEACGLLGGRRDG-DDRWVERVYPLNNLDQSPEHFSMDPREQLTAVKDMRKNG--WVMLG 78 (146)
T ss_dssp EEEEHHHHHHHHHHHHHHTTSCEEEEEEEEEET-TEEEEEEEECCCCCSCCSSSCCCCHHHHHHHHHHHHHHT--CEEEE
T ss_pred EEECHHHHHHHHHHHHhcCCcceEEEEEEEEcC-CCcEEEEEEECCCcCCCCceEEECHHHHHHHHHHHHHCC--CEEEE
Confidence 789999999999999999999999999999764 468899999999987776667899999999999988866 69999
Q ss_pred EEccCCCCCCcCCHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHHHHhhhccCCCccchhccc
Q psy15735 271 WYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKELAKHYNKALEEEEKMSPEQLAIKN 337 (574)
Q Consensus 271 WYHSHP~~~~~pS~~Di~tq~~yQ~~~p~~V~LIvDp~~s~~rLs~~y~~~~~ee~~ft~EeL~v~~ 337 (574)
||||||+.+++||.+|++++ ..++.+++|+++..+.. ..++.|...++++++++|.+..
T Consensus 79 ~~HSHP~~~~~PS~~D~~~~-----~~~~~~~lIvs~~~~~~---~~~~af~~~~~~~~e~~i~~~~ 137 (146)
T 2kks_A 79 NFHSHPATPARPSAEDKRLA-----FDPSLSYLIISLAEPQK---PVCKSFLIKKDGVDEEEIILKE 137 (146)
T ss_dssp EEEEESSSCSSCCHHHHTTC-----CSSSCEEEEEECSCSSS---CEEEEEEECSSCEEEECEEEES
T ss_pred EEeCCCcCCCCCCHHHHHhh-----hcCCCeEEEEEccCCCc---eEEEEEEEeCCeEEEEEEEEeh
Confidence 99999999999999999853 35889999999976321 2456665567888888887643
No 8
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=99.86 E-value=7.7e-22 Score=192.87 Aligned_cols=144 Identities=19% Similarity=0.320 Sum_probs=117.1
Q ss_pred CCCCccEEEECHHHHHHHHHHHhcCC--CceEEEEeeeEEcCCceEEEEEEEeCCcccCCCCcccccHHHHHHHHHHHHh
Q psy15735 184 VVDTAEQVYISSLALLKMLKHGRAGV--PMEVMGLMLGEFVDEYTVRVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQ 261 (574)
Q Consensus 184 ~~~~~~~V~Is~~vllkIl~Ha~~~~--p~Ev~GlLlG~~~~~~~l~Vt~~fp~p~~~~~~~~~~idp~~q~~ml~~lr~ 261 (574)
..+.+++|.|++.++.+|+.||+.+. +.|+||+|+|...+ ++++|+++|..|+.+++++++..++..+.+.+ ++
T Consensus 37 ~~~~lr~v~Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk~~~-~~~~I~~v~~ppq~gt~~~v~~~~~~e~~~~~---~~ 112 (211)
T 3rzv_A 37 TIDGLRHVVVPGRLCPQFLQLASANTARGVATCGILCGKLMR-NEFTITHVLIPKQSAGSDYCNTENEEELFLIQ---DQ 112 (211)
T ss_dssp CBTTBCCEEEETTHHHHHHHHHHHHHHTTCCCEEEEEEEEET-TEEEEEEEEECCEEECSSCEEECCHHHHHHHH---HH
T ss_pred cccccEEEEECHHHHHHHHHHHHhCCCCCceEEEEEEeEcCC-CCEEEEEEEeCCccCCCCceeccChHHHHHHH---hh
Confidence 34567899999999999999999864 58999999999865 58999999999998888888766665443332 23
Q ss_pred cCCCCcEEEEEccCCCCCCcCCHHHHHHHHHHHhcCCCeEEEEEcCCCCch---hHHHHHHHHhh--hccCCCccch
Q psy15735 262 TGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVK---ELAKHYNKALE--EEEKMSPEQL 333 (574)
Q Consensus 262 ~g~~~~vVGWYHSHP~~~~~pS~~Di~tq~~yQ~~~p~~V~LIvDp~~s~~---rLs~~y~~~~~--ee~~ft~EeL 333 (574)
+++++||||||||+.++|||..|+++|..||.+.+++++||+||.+..- ||++.-++|.. .+..|+++.-
T Consensus 113 --~~l~~vGWyHSHP~~~~~pS~~Dl~tq~~~q~~~~~~I~IVvsP~~~~lgaFrLtp~G~~~~~~c~~~~fhph~~ 187 (211)
T 3rzv_A 113 --QGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKFQETGFFKLTDHGLEEISSCRQKGFHPHSK 187 (211)
T ss_dssp --HTCEEEEEEEECTTSCSCCCHHHHHHHHHHHHHCTTCEEEEEETTTTEEEEEEECHHHHHHHHHCCCCSSCCCCC
T ss_pred --CCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCCeeeEEEeccchhhhhhccccCCcccCCC
Confidence 3589999999999999999999999999999999999999999987642 77766666532 2334888764
No 9
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.70 E-value=7.7e-17 Score=168.78 Aligned_cols=124 Identities=29% Similarity=0.454 Sum_probs=103.5
Q ss_pred CccEEEECHHHHHHHHHHHhc---CCCceEEEEeeeEEcCCceEEEEEEEeCCcccCCC--CcccccHHHHHHHHHHHHh
Q psy15735 187 TAEQVYISSLALLKMLKHGRA---GVPMEVMGLMLGEFVDEYTVRVIDVFAMPQTGTGV--SVEAVDPVFQAKMLDMLKQ 261 (574)
Q Consensus 187 ~~~~V~Is~~vllkIl~Ha~~---~~p~Ev~GlLlG~~~~~~~l~Vt~~fp~p~~~~~~--~~~~idp~~q~~ml~~lr~ 261 (574)
..++|.|+|+|+++|++|+.+ ..+.+|+|.|+|... +++++|+|||++|...++. .+..+|.+|+.+|.+++++
T Consensus 4 ~~~~V~vhPlVll~I~dH~~R~~~~~~~rViG~LLG~~~-~~~veV~nsF~~p~~e~~~~~~~~~~D~~y~~~m~~~~kk 82 (338)
T 4b4t_U 4 QHEKVTIAPLVLLSALDHYERTQTKENKRCVGVILGDAN-SSTIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMCKK 82 (338)
T ss_dssp CCSEEEECHHHHHHHHHHHHHHTTTCCSCCEEEEEEEEC-SSEEEEEEEEECCEEECSSSTTCEEECHHHHHHHHHHHHH
T ss_pred CCCEEEEecHHHHHHHHHHHHhhcCCCCeEEEEEEeEEc-CCEEEEEEEEEeccccCCCCCccccccHHHHHHHHHHHhh
Confidence 347999999999999999844 456789999999874 5799999999999866543 3445899999999999999
Q ss_pred cCCCCcEEEEEccCCCCCCcCCHHHHHHHHHHHhcC-CCeEEEEEcCCCCchhHH
Q psy15735 262 TGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALS-ERAVAVVVDPIQSVKELA 315 (574)
Q Consensus 262 ~g~~~~vVGWYHSHP~~~~~pS~~Di~tq~~yQ~~~-p~~V~LIvDp~~s~~rLs 315 (574)
+++++.+||||||+|. ++..|+..|..|++.+ +.++++++|+.....+++
T Consensus 83 V~~~e~iVGWY~tg~~----~~~~d~~Ih~~~~~~~~~~pi~l~~d~~~~~~~lp 133 (338)
T 4b4t_U 83 INAKEKLIGWYHSGPK----LRASDLKINELFKKYTQNNPLLLIVDVKQQGVGLP 133 (338)
T ss_dssp HCCSCEEEEEEECCSS----CCSTHHHHHHHHGGGCCSCCCEEEECSCCCSSSCS
T ss_pred cCccCCEEEEEecCCC----CCccHHHHHHHHHhccCCCcEEEEecCCCCCCCcc
Confidence 9999999999999974 6667888899998876 578899999976655443
No 10
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=99.67 E-value=7.3e-17 Score=145.43 Aligned_cols=100 Identities=23% Similarity=0.247 Sum_probs=75.8
Q ss_pred cEEEECHHHHHHHHHHHhcCCCceEEEEeeeEEcCCceEEEEEEEeCCcccCCCCcccccHHHHHHHHHHHHhcCCCCcE
Q psy15735 189 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQTGRPEMV 268 (574)
Q Consensus 189 ~~V~Is~~vllkIl~Ha~~~~p~Ev~GlLlG~~~~~~~l~Vt~~fp~p~~~~~~~~~~idp~~q~~ml~~lr~~g~~~~v 268 (574)
+.|.|++.++.+|++||+++.|.|+||+|+|.. + .|++++++|+..++++ ..++..| .. +++++
T Consensus 2 ~~v~i~~~~l~~i~~ha~~~~P~E~cGlL~g~~--~---~v~~~~~~p~~~~~~~-----~~f~~~~----~~--~~~~i 65 (124)
T 1oi0_A 2 SSMKISRGLLKTILEAAKSAHPDEFIALLSGSK--D---VMDELIFLPFVSGSVS-----AVIHLDM----LP--IGMKV 65 (124)
T ss_dssp CSCEECHHHHHHHHHHHHHHTTSCCEEEEEEST--T---EECEEEECCCCC------------------------CCCEE
T ss_pred CEEEEcHHHHHHHHHHHHhcCCCeeEEEEeccc--C---EEEEEEECCCCCCCcC-----ceeeeee----cc--CCCEE
Confidence 458899999999999999999999999999974 2 6899999994433221 1122222 12 35799
Q ss_pred EEEEccCCCCCCcCCHHHHHHHHHHHhcCCCeEEEEEcCCC
Q psy15735 269 VGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQ 309 (574)
Q Consensus 269 VGWYHSHP~~~~~pS~~Di~tq~~yQ~~~p~~V~LIvDp~~ 309 (574)
||||||||+.+++||.+|++++. .++.+++|+++..
T Consensus 66 vG~~HSHP~~~~~PS~~D~~~~~-----~~~~~~lIvs~~~ 101 (124)
T 1oi0_A 66 FGTVHSHPSPSCRPSEEDLSLFT-----RFGKYHIIVCYPY 101 (124)
T ss_dssp EEEEEEESSSCCSCCHHHHHHHH-----HSCSEEEEEETTC
T ss_pred EEEEEECcCCCCccCHHHHHhhh-----cCCCEEEEEEccC
Confidence 99999999999999999998743 3789999999754
No 11
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.01 E-value=4e-10 Score=107.65 Aligned_cols=127 Identities=17% Similarity=0.120 Sum_probs=92.2
Q ss_pred CccchhhHHHHHHhhhhhHHHHHhhcc--------cccccccchhhhhhhhHhhHHHHHHHHHHHHHHHHhcCCcccchh
Q psy15735 341 QDPKRHLEEKVDTLMTANIIQCLGGKL--------IEPLWGSMEMMTFFAIVNIGVAISSTLFYFFLYMCTFNTDLLFFV 412 (574)
Q Consensus 341 ~DP~~~Le~~v~~fm~~nI~~~l~~mL--------~E~~wGs~EflkF~~vv~v~~~il~~~~~~~~y~~t~~~~~l~~~ 412 (574)
..+||.++ +.|+|.++.|+++||+ +|+.||+++|+.+|+++++++++++.++. .+
T Consensus 43 ~~~wrl~T---~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~~~fl~~yl~~~i~~~l~~~~~~--------~~------ 105 (181)
T 2xov_A 43 FEFWRYFT---HALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFS--------GP------ 105 (181)
T ss_dssp TCTTHHHH---GGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH--------CS------
T ss_pred CCCHHHHH---HHHHccCHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc--------CC------
Confidence 46787777 9999999999999998 79999999999999999998888765431 11
Q ss_pred hccChhHHHHHHHHHH---HhhcCCceeeccccccccchhHHHHHHHHHHHHHHHh-hcCchhHHHHHHHHHHHHHHHHh
Q psy15735 413 RIHGLTGYISGVLVAV---KQIMPDHVILNTGLGKMTNRNIPLLVILIASILWLIG-LVDSIRPTMTLFGTLVSWIYLRF 488 (574)
Q Consensus 413 ~i~G~~g~i~G~LVA~---kQl~Pd~~il~~~~~~ir~K~lP~i~ll~~~~l~~~~-~~~~~a~~~~~~G~~~sWiYLRf 488 (574)
+..|+||+++|++.++ ....|+..+. ++ .+.+.++ ++.+...+.+ +.+++++++|++|+++|++|-.+
T Consensus 106 ~~vGaSGai~gl~g~~~~~~~~~p~~~~~----l~--~~~~~~~--~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~ 177 (181)
T 2xov_A 106 WFGGLSGVVYALMGYVWLRGERDPQSGIY----LQ--RGLIIFA--LIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFV 177 (181)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHCGGGSCC----CC--HHHHHHH--HHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred CceeHHHHHHHHHHHHHHHHhhCcCceee----eH--HHHHHHH--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 2679999999999875 3577877542 11 1211111 1112222222 23578999999999999999888
Q ss_pred hccC
Q psy15735 489 YQYH 492 (574)
Q Consensus 489 ~q~~ 492 (574)
++|+
T Consensus 178 ~~~~ 181 (181)
T 2xov_A 178 DSLN 181 (181)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7753
No 12
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=98.83 E-value=3.9e-09 Score=104.81 Aligned_cols=129 Identities=13% Similarity=0.141 Sum_probs=97.0
Q ss_pred CccEEEECHHHHHHHHHHHhcCCCceEEEEeeeEEcCC--ceEEEEEEEeCCcccCCCCcccccHHHHHHHHHHHHhcCC
Q psy15735 187 TAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDE--YTVRVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQTGR 264 (574)
Q Consensus 187 ~~~~V~Is~~vllkIl~Ha~~~~p~Ev~GlLlG~~~~~--~~l~Vt~~fp~p~~~~~~~~~~idp~~q~~ml~~lr~~g~ 264 (574)
...++.|+..++.|.+..|.. ..++||+|.|....| +..+|+.+.-.|+.++.+.|..-+...+ .++.. -.
T Consensus 36 ~~~t~vlPknLlkkFi~IAD~--~Tq~cG~LyG~~~~d~~~v~eI~~ivippQ~gt~~s~~~~~~~p~---~~~~~--l~ 108 (254)
T 2og4_A 36 EQNVYVLPKNLLKKFIEISDV--KIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDI---GDLPD--TE 108 (254)
T ss_dssp TSCEEEEEHHHHHHHHHTSCS--SSCCEEEEEEEECSSCTTEEEEEEEECCCEEEETTEEEECCCCCC---TTSTT--CT
T ss_pred CCcEEEcCHHHHHHHHHHhhc--cceEEEEEEccCCCCCCCeEEEEEEEECCccCCCceEECCCcCcc---ccchh--hc
Confidence 346899999999999988865 358999999987432 4678998888889888776642221000 01101 24
Q ss_pred CCcEEEEEccCCCCCCcCCHHHHHHHHHHHh-cCCCeEEEEEcCCCCch-----hHHHHHHHHh
Q psy15735 265 PEMVVGWYHSHPGFGCWLSGVDINTQQSFEA-LSERAVAVVVDPIQSVK-----ELAKHYNKAL 322 (574)
Q Consensus 265 ~~~vVGWYHSHP~~~~~pS~~Di~tq~~yQ~-~~p~~V~LIvDp~~s~~-----rLs~~y~~~~ 322 (574)
++..+||-|+||.-.+++|+.|+.+|++||. +.+++|+++|++..+.. +|++.=.+|-
T Consensus 109 dLe~LGWIHTqptq~~fLSs~Dl~tH~~~~~~~~~eaIaIvcsftpgs~sl~af~LT~~G~~Wg 172 (254)
T 2og4_A 109 GLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFSTPGSVSLSAYNLTDEGYQWG 172 (254)
T ss_dssp TCEEEEEEEEESSCCSSCCHHHHHHHHHHHTTTCTTCEEEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred CCEecceEeeCCCCCcccCHHHHHHHHHHHHhcCCCeEEEEEecCCCCceeEEEEcChhhhhhh
Confidence 6899999999999999999999999999998 56999999999854332 7876555663
No 13
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=98.82 E-value=1.7e-09 Score=104.53 Aligned_cols=126 Identities=16% Similarity=0.134 Sum_probs=88.5
Q ss_pred CccchhhHHHHHHhhhhhHHHHHhhcc--------cccccccchhhhhhhhHhhHHHHHHHHHHHHHHHHhcCCcccchh
Q psy15735 341 QDPKRHLEEKVDTLMTANIIQCLGGKL--------IEPLWGSMEMMTFFAIVNIGVAISSTLFYFFLYMCTFNTDLLFFV 412 (574)
Q Consensus 341 ~DP~~~Le~~v~~fm~~nI~~~l~~mL--------~E~~wGs~EflkF~~vv~v~~~il~~~~~~~~y~~t~~~~~l~~~ 412 (574)
..+|+.++ +.|+|.++.|+++||+ +|+.||+++|+.+|+++++++++++.++. .+
T Consensus 48 ~~~wrl~T---~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G~~~~l~~yl~~~~~~~l~~~~~~--------~~------ 110 (196)
T 2nr9_A 48 SEVWRYIS---HTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVS--------GP------ 110 (196)
T ss_dssp GCTTHHHH---GGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH--------CS------
T ss_pred CCcHHHHH---HHHHccCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHhc--------CC------
Confidence 45777777 9999999999999998 89999999999999999998888765432 11
Q ss_pred hccChhHHHHHHHHHHHh---hcCCceeeccccccccchhHHHHHHHHHHHHHHHh--hcCchhHHHHHHHHHHHHHHHH
Q psy15735 413 RIHGLTGYISGVLVAVKQ---IMPDHVILNTGLGKMTNRNIPLLVILIASILWLIG--LVDSIRPTMTLFGTLVSWIYLR 487 (574)
Q Consensus 413 ~i~G~~g~i~G~LVA~kQ---l~Pd~~il~~~~~~ir~K~lP~i~ll~~~~l~~~~--~~~~~a~~~~~~G~~~sWiYLR 487 (574)
...|+||+++|++.++-. ..|+. + .++.+...+..+.+++ .+.+ ..+++++++|++|+++|++|-.
T Consensus 111 ~~vGaSGai~gl~g~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~aHlgG~l~G~l~~~ 181 (196)
T 2nr9_A 111 AFFGLSGVVYAVLGYVFIRDKLNHHL-F----DLPEGFFTMLLVGIAL----GFISPLFGVEMGNAAHISGLIVGLIWGF 181 (196)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHSSTTS-C----CCCCSSTTTTTTTTTH----HHHSCSSCCTTCHHHHHHHHHHHHHHHH
T ss_pred CeeeHHHHHHHHHHHHHHHHHhcchh-h----cchHHHHHHHHHHHHH----HHHHhccCCCccHHHHHHHHHHHHHHHH
Confidence 257999999999987532 33443 1 1222222221111121 1222 2347899999999999999888
Q ss_pred hhccC
Q psy15735 488 FYQYH 492 (574)
Q Consensus 488 f~q~~ 492 (574)
.+.++
T Consensus 182 ~~~~~ 186 (196)
T 2nr9_A 182 IDSKL 186 (196)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77654
No 14
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=98.68 E-value=2.5e-08 Score=99.93 Aligned_cols=126 Identities=19% Similarity=0.200 Sum_probs=94.6
Q ss_pred CccEEEECHHHHHHHHHHHhcCCCceEEEEeeeEEcC--CceEEEEEEEeCCcccCCCCcccccHHHHHHHHHHHHhcCC
Q psy15735 187 TAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVD--EYTVRVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQTGR 264 (574)
Q Consensus 187 ~~~~V~Is~~vllkIl~Ha~~~~p~Ev~GlLlG~~~~--~~~l~Vt~~fp~p~~~~~~~~~~idp~~q~~ml~~lr~~g~ 264 (574)
...++.|+..++.|.+.-|.. ..++||+|.|.... ++..+|+.+.-.|+.++...|..-+..-+ .+++ .
T Consensus 37 ~~~t~vlPknllkkFi~IADl--rTq~~G~LyG~s~~d~~~vkeI~~ivipPQ~gt~~sv~~~~~~p~---~~~l----~ 107 (273)
T 2p8r_A 37 TGYTYILPKNILKKFITISDL--RTQIAGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQLPD---HELL----R 107 (273)
T ss_dssp SSCEEEEEHHHHHHHHHTSCS--SSCCEEEEEEECCTTCTTEEEEEEEECCSBEECSSCEECCSSCCC---CTTT----T
T ss_pred CccEEEecHHHHHHHHHHhhc--cceEEEEEeccCCCCCCCeEEEEEEEECCccCCCceEECCCcCcc---hhhh----c
Confidence 346899999999999988754 36899999998643 25678998888899888777752221000 1112 4
Q ss_pred CCcEEEEEccCCCCCCcCCHHHHHHHHHHHhc---C--CCeEEEEEcCCCCch-----hHHHHHHHH
Q psy15735 265 PEMVVGWYHSHPGFGCWLSGVDINTQQSFEAL---S--ERAVAVVVDPIQSVK-----ELAKHYNKA 321 (574)
Q Consensus 265 ~~~vVGWYHSHP~~~~~pS~~Di~tq~~yQ~~---~--p~~V~LIvDp~~s~~-----rLs~~y~~~ 321 (574)
++..+||-|+||.-.+++|+.|+.+|++||.+ . +++|+++|++..+.. +|++.=..|
T Consensus 108 dLe~LGWIHTqp~e~~~LSs~Dl~tH~~~~~~~~~~~~~e~I~Ivcsftpgs~sl~af~LT~~G~~W 174 (273)
T 2p8r_A 108 DFEPLGWMHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSFTPGSVSLTAYKLTPSGYEW 174 (273)
T ss_dssp TSEEEEEEEEESSCCSSCCHHHHHHHHHHHHHCTTCCTTTCEEEEEEEETTEEEEEEEEECHHHHHH
T ss_pred cccccceEeeCCCCCCCcCHHHHHHHHHHHhcccccCCCceEEEEEecCCCCceeEEEEcChHHhhh
Confidence 68999999999999999999999999999974 3 499999999755332 777543445
No 15
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.00012 Score=78.73 Aligned_cols=126 Identities=14% Similarity=0.178 Sum_probs=90.2
Q ss_pred ccEEEECHHHHHHHHHHHhcCCCceEEEEeeeEEcCC--ceEEEEEEEeCCcccCCCCccccc--HHHHHHHHHHHHhcC
Q psy15735 188 AEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDE--YTVRVIDVFAMPQTGTGVSVEAVD--PVFQAKMLDMLKQTG 263 (574)
Q Consensus 188 ~~~V~Is~~vllkIl~Ha~~~~p~Ev~GlLlG~~~~~--~~l~Vt~~fp~p~~~~~~~~~~id--p~~q~~ml~~lr~~g 263 (574)
..++.++..++.|.+.-|.. ..++||.|.|....| +..+|+.+.-.|+.++.++|. +. |.. +...+ -
T Consensus 348 ~~tyVlPkNLLkKFI~IADl--rTQicGyLyG~sp~dn~nVkEI~cIVipPQ~Gt~~sv~-lp~lp~h--e~~~~----l 418 (565)
T 3sbg_A 348 QNVYVLPKNLLKKFIEISDV--KIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQ-ISNIPDI--GDLPD----T 418 (565)
T ss_dssp SCEEEEEHHHHHHHHHHSCS--SSCCEEEEEEEEETTEEEEEEEEEEECCCEEECSSCEE-ECCCCCC--TTSTT----C
T ss_pred CcEEEccHHHHHHHHHHhhc--cceeEEEEecCCCCCCCCeEEEEEEEECCccCCCceEE-CCCCCcc--ccccc----c
Confidence 46799999999999987754 458999999987543 457898888888988887774 22 110 00001 1
Q ss_pred CCCcEEEEEccCCCCCCcCCHHHHHHHHHHHhcC-CCeEEEEEcCCCCch-----hHHHHHHHHh
Q psy15735 264 RPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALS-ERAVAVVVDPIQSVK-----ELAKHYNKAL 322 (574)
Q Consensus 264 ~~~~vVGWYHSHP~~~~~pS~~Di~tq~~yQ~~~-p~~V~LIvDp~~s~~-----rLs~~y~~~~ 322 (574)
.+++.+||-|+||.-.+++|+.|+.+|+.+-..+ ..++.+.|+-..+.- +|+++=-+|-
T Consensus 419 ~dLe~LGWIHTqp~et~fLSs~Dl~THakl~~~n~~~~I~itvsftPGS~SLsAy~LT~eGyeWG 483 (565)
T 3sbg_A 419 EGLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFSTPGSVSLSAYNLTDEGYQWG 483 (565)
T ss_dssp TTCEEEEEEEEESSCCSSCCHHHHHHHHHHHSSSCTTCEEEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred ccCEecceeeecCCcccccCHHHHHHHHHHHHhCCCCeEEEEEEecCCceEEEEEecCHhHHHHH
Confidence 4689999999999999999999999998885432 366777776644432 5664444553
No 16
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=76.17 E-value=31 Score=30.38 Aligned_cols=90 Identities=12% Similarity=0.083 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEeeeEEcCCceEEEEEEEeCCcccCCCCcccccHHHHHHHHHHHHhcCCCCcEEEEEc
Q psy15735 194 SSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYH 273 (574)
Q Consensus 194 s~~vllkIl~Ha~~~~p~Ev~GlLlG~~~~~~~l~Vt~~fp~p~~~~~~~~~~idp~~q~~ml~~lr~~g~~~~vVGWYH 273 (574)
++..+.+.+...-.+.+.|+..+|.= +..++.+....++. ++-++. .++|.+- .+.+=+.+ ..-|..-|
T Consensus 7 s~~~v~~~l~~~l~~~~~E~f~vl~L-d~~n~li~~~~l~~----Gt~~~~-~v~pRei---~~~Al~~~--A~~vIl~H 75 (126)
T 2qlc_A 7 GARDVFEYMKGRIPDETKEHLFVLFL-STKNQILRHETITI----GTLTAS-LIHPREI---FKAAIRES--AHSIILVH 75 (126)
T ss_dssp SHHHHHHHHTTCCSCTTSCEEEEEEE-CTTCBEEEEEEEEE----SSCCGG-GCCHHHH---HHHHHHTT--CSEEEEEE
T ss_pred CHHHHHHHHHHHhCcCCCeEEEEEEE-cCCCCEEEEEEecC----CCCCcE-eecHHHH---HHHHHHcC--CcEEEEEe
Confidence 34445555544444567888655532 22223344443332 222222 3677533 33322334 37888899
Q ss_pred cCCCCCCcCCHHHHHHHHHHH
Q psy15735 274 SHPGFGCWLSGVDINTQQSFE 294 (574)
Q Consensus 274 SHP~~~~~pS~~Di~tq~~yQ 294 (574)
.||++.+.||..|++.-...+
T Consensus 76 NHPSG~~~PS~~D~~~T~~l~ 96 (126)
T 2qlc_A 76 NHPSGDVQPSNADKQVTSILK 96 (126)
T ss_dssp ECSSSCCSCCHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHH
Confidence 999999999999998655443
No 17
>1g70_B RSG-1.2 peptide; peptide-RNA complex, non-canonical base pairs, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.3.1
Probab=59.93 E-value=2.7 Score=26.08 Aligned_cols=14 Identities=43% Similarity=0.570 Sum_probs=8.8
Q ss_pred CCCchhhhhhhhhh
Q psy15735 558 GIDPNDAERRSSVY 571 (574)
Q Consensus 558 g~~~~eAeRRR~~a 571 (574)
|+.|.-|||||..|
T Consensus 6 gsrpsgaerrrrra 19 (26)
T 1g70_B 6 GSRPSGAERRRRRA 19 (26)
T ss_pred CCCCchHHHHHHHH
Confidence 45566677776554
No 18
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=45.17 E-value=25 Score=23.73 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=20.8
Q ss_pred hhHHHHHHHHhhhhhHHHHhhHHHHHhhhcC
Q psy15735 138 RHLEEKVDTLMTANIIQCLDRNMERLLRLGS 168 (574)
Q Consensus 138 ~hl~~~~~~~~~~ni~q~l~~ml~~l~~~~~ 168 (574)
+.||++||+|+..| +.|-.-++++..+++
T Consensus 3 nQLEdKvEeLl~~~--~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 3 KXIEXKLXEIXSKX--YHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHh--hHHHHHHHHHHHHHc
Confidence 46899999999887 455555666665553
No 19
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=41.80 E-value=32 Score=23.38 Aligned_cols=29 Identities=14% Similarity=0.453 Sum_probs=20.9
Q ss_pred hhHHHHHHHHhhhhhHHHHhhHHHHHhhhcC
Q psy15735 138 RHLEEKVDTLMTANIIQCLDRNMERLLRLGS 168 (574)
Q Consensus 138 ~hl~~~~~~~~~~ni~q~l~~ml~~l~~~~~ 168 (574)
+.||++||+|+..| +.|..-++++..+++
T Consensus 4 nQLEdKvEeLl~~~--~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 4 KQIEDKLEEILSKG--HHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHcc--HHHHHHHHHHHHHhc
Confidence 46899999999887 455666667766654
No 20
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=38.47 E-value=39 Score=22.93 Aligned_cols=29 Identities=34% Similarity=0.441 Sum_probs=21.0
Q ss_pred hhHHHHHHHHhhhhhHHHHhhHHHHHhhhcC
Q psy15735 138 RHLEEKVDTLMTANIIQCLDRNMERLLRLGS 168 (574)
Q Consensus 138 ~hl~~~~~~~~~~ni~q~l~~ml~~l~~~~~ 168 (574)
..||++|++||.+| +.|-.-++++..++.
T Consensus 4 nQLE~kVEeLl~~n--~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 4 XQLEXKVXELLXKN--XHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhh--hhHHHHHHHHHHHHh
Confidence 46899999999988 456656666665553
No 21
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=37.49 E-value=44 Score=22.61 Aligned_cols=29 Identities=34% Similarity=0.523 Sum_probs=20.9
Q ss_pred hhHHHHHHHHhhhhhHHHHhhHHHHHhhhcC
Q psy15735 138 RHLEEKVDTLMTANIIQCLDRNMERLLRLGS 168 (574)
Q Consensus 138 ~hl~~~~~~~~~~ni~q~l~~ml~~l~~~~~ 168 (574)
..||++||+|+.+|. .|-.=+.++..++.
T Consensus 3 ~QLE~kVEeLl~~n~--~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 3 AQLEAKVEELLSKNW--NLENEVARLKKLVG 31 (33)
T ss_dssp CHHHHHHHHHHHHHH--HHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhH--HHHHHHHHHHHHhh
Confidence 369999999999984 45555666665553
No 22
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=37.10 E-value=39 Score=22.89 Aligned_cols=29 Identities=14% Similarity=0.273 Sum_probs=20.1
Q ss_pred hhHHHHHHHHhhhhhHHHHhhHHHHHhhhcC
Q psy15735 138 RHLEEKVDTLMTANIIQCLDRNMERLLRLGS 168 (574)
Q Consensus 138 ~hl~~~~~~~~~~ni~q~l~~ml~~l~~~~~ 168 (574)
..||++||+|+..| +.|-.-++++..+++
T Consensus 4 nQLEdKVEeLl~~~--~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 4 XQIEXKLEXILSXL--YHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhh--hHHHHHHHHHHHHHh
Confidence 46899999999887 445555666665553
No 23
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=36.27 E-value=50 Score=22.44 Aligned_cols=29 Identities=14% Similarity=0.401 Sum_probs=20.4
Q ss_pred hhHHHHHHHHhhhhhHHHHhhHHHHHhhhcC
Q psy15735 138 RHLEEKVDTLMTANIIQCLDRNMERLLRLGS 168 (574)
Q Consensus 138 ~hl~~~~~~~~~~ni~q~l~~ml~~l~~~~~ 168 (574)
+.||++||+|+..|. .|-.=+.++..++.
T Consensus 4 ~QLEdKVEeLl~~n~--~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 4 KQIEDKGEEILSKLY--HIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhhH--HHHHHHHHHHHHHc
Confidence 469999999999884 45555556665553
No 24
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=31.11 E-value=25 Score=23.87 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=18.9
Q ss_pred hhHHHHHHHHhhhhhHHHHhhHHHHHhhhc
Q psy15735 138 RHLEEKVDTLMTANIIQCLDRNMERLLRLG 167 (574)
Q Consensus 138 ~hl~~~~~~~~~~ni~q~l~~ml~~l~~~~ 167 (574)
+.|+++||+|+..|- .|..-+.++..++
T Consensus 4 nQLEdkVEeLl~~~~--~Le~eV~RL~~ll 31 (34)
T 2hy6_A 4 KQLADAVEELASANY--HLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhH--HHHHHHHHHHHHh
Confidence 468999999998873 4555555555443
No 25
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=23.99 E-value=41 Score=22.72 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=18.9
Q ss_pred hhHHHHHHHHhhhhhHHHHhhHHHHHhhhc
Q psy15735 138 RHLEEKVDTLMTANIIQCLDRNMERLLRLG 167 (574)
Q Consensus 138 ~hl~~~~~~~~~~ni~q~l~~ml~~l~~~~ 167 (574)
+.||++||+|+..|- -|..-+.++..++
T Consensus 3 nQLEdKVEell~~~~--~le~EV~Rl~~ll 30 (33)
T 2wq1_A 3 KQLEDKIEENTSKIY--HNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhH--HHHHHHHHHHHHh
Confidence 578999999998763 4444455555544
No 26
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=21.83 E-value=47 Score=22.85 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=16.7
Q ss_pred hhHHHHHHHHhhhhhHHHHhhHHHHHhhh
Q psy15735 138 RHLEEKVDTLMTANIIQCLDRNMERLLRL 166 (574)
Q Consensus 138 ~hl~~~~~~~~~~ni~q~l~~ml~~l~~~ 166 (574)
+.||++||+|+..|- -|-.-+.++..+
T Consensus 4 nQLE~KVEeLl~~~~--~Le~eV~RLk~l 30 (36)
T 1kd8_B 4 KQLKAKVEELKSKLW--HLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhH--HHHHHHHHHHHH
Confidence 468888988888763 344444444433
No 27
>2jx5_A GLUB(S27A); ubiquitin, ribosome, recombination, evolution, ribosomal protein; NMR {Giardia lamblia atcc 50803}
Probab=20.17 E-value=54 Score=24.81 Aligned_cols=13 Identities=46% Similarity=0.465 Sum_probs=9.8
Q ss_pred CCCcCcEEEeccc
Q psy15735 5 LPQLGKVVIDAFR 17 (574)
Q Consensus 5 ~~~kgkvvidafr 17 (574)
-....|.|||||-
T Consensus 49 aelndkmvidafv 61 (69)
T 2jx5_A 49 AELNDKMVIDAFV 61 (69)
T ss_dssp CCCCSSEEEEEEC
T ss_pred HhhCCceEEEEee
Confidence 3445789999995
No 28
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=20.09 E-value=53 Score=22.56 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=15.9
Q ss_pred hhHHHHHHHHhhhhhHHHHhhHHHHHhh
Q psy15735 138 RHLEEKVDTLMTANIIQCLDRNMERLLR 165 (574)
Q Consensus 138 ~hl~~~~~~~~~~ni~q~l~~ml~~l~~ 165 (574)
+.||++|++|+..|- -|-.-+.++..
T Consensus 4 nQLE~kVEeLl~~~~--~Le~EV~RL~~ 29 (36)
T 1kd8_A 4 KQLEAEVEEIESEVW--HLENEVARLEK 29 (36)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhH--HHHHHHHHHHH
Confidence 468888888887763 34333444443
Done!