RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15735
(574 letters)
>d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 121
Score = 70.0 bits (171), Expect = 3e-15
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 16/105 (15%)
Query: 191 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVIDVFAMPQTGTGVSVEAVDPV 250
+ IS L +L+ ++ P E + L+ G + ++ +P SV AV
Sbjct: 4 MKISRGLLKTILEAAKSAHPDEFIALLSGS-----KDVMDELIFLPFVSG--SVSAVIH- 55
Query: 251 FQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEA 295
LDML + V G HSHP C S D++ F
Sbjct: 56 -----LDMLPIGMK---VFGTVHSHPSPSCRPSEEDLSLFTRFGK 92
>d1rfza_ a.195.1.1 (A:) YutG homologue {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 164
Score = 35.5 bits (82), Expect = 0.007
Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 22/120 (18%)
Query: 290 QQSFEALSERAVAVVVDPIQSVKELAKHYNKALEEEEKMSPEQLAIKNVGKQDPKRHLEE 349
Q + L ER V V + V L Y+ L EE I+NV + KR E
Sbjct: 14 QTARRWLEERGV-TVEKIAELVYYLQSKYHPDLTMEEC-------IENVNRVISKR---E 62
Query: 350 KVDTLMTANIIQCLG--GKLIEPLWGSMEM---------MTFFAIVNIGVAISSTLFYFF 398
+ ++T + L G+L EPL + + +IVN+ +I T + +
Sbjct: 63 VQNAILTGIQLDKLAEDGRLDEPLQSIIRRDEGLYGVDEILALSIVNVYGSIGFTNYGYI 122
>d1tlqa_ a.195.1.1 (A:) Hypothetical protein YpjQ {Bacillus subtilis
[TaxId: 1423]}
Length = 161
Score = 34.3 bits (79), Expect = 0.016
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 24/117 (20%)
Query: 294 EALSERAVAVVVDPIQSVKELAKHYNKALEEEEKMSPEQLAIKNVGKQDPKRHLEEKVDT 353
+ L++R V ++ D + V++L + YN L ++NV K KR E +
Sbjct: 12 DMLNKRGV-MIEDIARIVQKLQEKYNPNLPLSV-------CMENVEKVLNKR---EIIHA 60
Query: 354 LMTANIIQCLG--GKLIEPL----------WGSMEMMTFFAIVNIGVAISSTLFYFF 398
++T + L L EPL +G E++ +IVN+ +I T F +
Sbjct: 61 VLTGLALDQLAEQKLLPEPLQHLVETDEPLYGIDEIIPL-SIVNVYGSIGLTNFGYL 116
>d1y9ia_ a.195.1.1 (A:) Low temperature requirement C protein, LtrC
{Listeria monocytogenes [TaxId: 1639]}
Length = 159
Score = 32.8 bits (75), Expect = 0.043
Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 24/121 (19%)
Query: 290 QQSFEALSERAVAVVVDPIQSVKELAKHYNKALEEEEKMSPEQLAIKNVGKQDPKRHLEE 349
++ L ER V + D + V L + Y+ LE + +NV KR E
Sbjct: 7 SKARSWLIERGV-EIDDIAELVLFLQQKYHPGLELDI-------CRQNVEHVLRKR---E 55
Query: 350 KVDTLMTANIIQCLG--GKLIEPL----------WGSMEMMTFFAIVNIGVAISSTLFYF 397
+ ++T + + G+L++PL +G E++ +IVN+ +I T + +
Sbjct: 56 VQNAVLTGIQLDVMAEKGELVQPLQNIISADEGLYGVDEILAL-SIVNVYGSIGFTNYGY 114
Query: 398 F 398
Sbjct: 115 I 115
>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase
subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
Length = 538
Score = 31.7 bits (72), Expect = 0.22
Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 6/100 (6%)
Query: 370 PLWGSMEMMTFFAIVNIGVAISSTLFYFFLYMCTFNTDLLFFVRIHGLTGY-ISGVLVAV 428
S+ + + FA G S + + + T + + I + S +L A+
Sbjct: 134 VAGTSLAVASLFAPGGNGQLGSGIGWVLYPPLSTSESGYSTDLAIFAVHLSGASSILGAI 193
Query: 429 KQIMPDHVILNTGLGKMTNRNIPLLV--ILIASILWLIGL 466
I LN MT +PL I + + L L+ L
Sbjct: 194 NMITT---FLNMRAPGMTMHKVPLFAWSIFVTAWLILLAL 230
>d1f0la3 f.1.2.1 (A:201-380) Diphtheria toxin, middle domain
{Corynebacterium diphtheriae [TaxId: 1717]}
Length = 180
Score = 29.3 bits (65), Expect = 0.71
Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 14/122 (11%)
Query: 106 ELAKHYNKALEEEEKMSPEQLAIKNVGKQDPKRHLEEKVDTLMTANIIQCLDR----NME 161
E AK Y + + PE +K V +P N+ Q +D N+E
Sbjct: 41 EKAKQYLEEFHQTALEHPELSELKTVTGTNPV--FAGANYAAWAVNVAQVIDSETADNLE 98
Query: 162 RLLRLGSGMPGLSQAPPVSDGPVVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEF 221
+ S +PG+ ++DG V E++ S+AL ++ +P ++GE
Sbjct: 99 KTTAALSILPGIGSVMGIADGAVHHNTEEIVAQSIALSSLMV--AQAIP------LVGEL 150
Query: 222 VD 223
VD
Sbjct: 151 VD 152
>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 27.9 bits (61), Expect = 1.2
Identities = 11/78 (14%), Positives = 18/78 (23%), Gaps = 3/78 (3%)
Query: 173 LSQAPPVSDGPVVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVIDV 232
L PP G V + + + V + RV+
Sbjct: 20 LKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVV-- 77
Query: 233 FAMPQTGTGVSVEAVDPV 250
+ G + PV
Sbjct: 78 -GVNIAGRSEPATLLQPV 94
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 27.9 bits (62), Expect = 1.5
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 294 EALSERAVAVVVDPIQSVKELAKH----YNKALEEEEKMSPEQLAIKNVGKQDPKRHLEE 349
E V+ I+ K + +E ++ LA Q+ +H EE
Sbjct: 70 AEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEE 129
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 26.4 bits (58), Expect = 2.4
Identities = 14/80 (17%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 66 NELEQKMLLNLHKKTWMDGLSLQDYNEHCKLNEGTVNDMLELAKHYNKALEEEEKMSPEQ 125
NE+E+ +L + + + + +L AK + K LE+ ++ +
Sbjct: 6 NEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLS---LLTKAKLHIKKLEDSDR----K 58
Query: 126 LAIKNVGKQDPKRHLEEKVD 145
+ Q +RHL+ +++
Sbjct: 59 AVHQIDQLQREQRHLKRQLE 78
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
562]}
Length = 417
Score = 28.2 bits (61), Expect = 3.2
Identities = 15/144 (10%), Positives = 44/144 (30%), Gaps = 6/144 (4%)
Query: 394 LFYFFLYMCTFNTDLLFFVRIHGLTGYISGVLVAVKQIMPDHVILNTGLGKMTNR----N 449
FYFF+ F ++ I+ ++ +G++ A + ++ G ++++
Sbjct: 17 FFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFS--LLFQPLFGLLSDKLGLRK 74
Query: 450 IPLLVILIASILWLIGLVDSIRPTMTLFGTLVSWIYLRFYQYHTNGTRGDMADNFNFANF 509
L +I +++ + P + + S + + + N + +
Sbjct: 75 YLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR 134
Query: 510 FPTIIQPPIAVVCNTIHEFLVRIG 533
+ I
Sbjct: 135 RSNFEFGRARMFGCVGWALGASIV 158
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 26.0 bits (57), Expect = 4.6
Identities = 14/84 (16%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 66 NELEQKMLLNLHKKTWMDGLSLQDYNEHCKLNEGTVNDMLELAKHYNKALEEEEKMSPEQ 125
N LE++ L + + + + + K + +L+ A Y +++ EE ++
Sbjct: 11 NVLERQRRNELKRSFFALRDQIPELENNEKAPKV---VILKKATAYILSVQAEE----QK 63
Query: 126 LAIKNVGKQDPKRHLEEKVDTLMT 149
L + + + L+ K++ L
Sbjct: 64 LISEEDLLRKRREQLKHKLEQLGG 87
>d1yq2a5 c.1.8.3 (A:313-609) beta-Galactosidase, domain 3
{Arthrobacter sp. c2-2 [TaxId: 192168]}
Length = 297
Score = 27.2 bits (59), Expect = 5.6
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 10/85 (11%)
Query: 220 EFVDEYTVRVIDVFAMPQTGT----GVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSH 275
+ DE VI + G V + P ++ ++D +++T +H
Sbjct: 66 DLADEMGFWVILECDLETHGFEAGGWVENPSDVPAWRDALVDRMERTVE------RDKNH 119
Query: 276 PGFGCWLSGVDINTQQSFEALSERA 300
P W G + T + A++ A
Sbjct: 120 PSIVMWSLGNESGTGSNLAAMAAWA 144
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus
pyogenes [TaxId: 1314]}
Length = 106
Score = 25.9 bits (57), Expect = 5.8
Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 10/78 (12%)
Query: 69 EQKMLLNLHKKTWMDGLSLQDYNEHCKLNEGTVNDMLELAKHYNKALEE-EEKMSPEQLA 127
+Q + L+ + D SL + + ++ V D ++ + K LE E K+ +
Sbjct: 20 KQMNYIELY---YADDYSLAEIADEFGVSRQAVYDNIKRTE---KILETYEMKL---HMY 70
Query: 128 IKNVGKQDPKRHLEEKVD 145
V + + +
Sbjct: 71 SDYVVRSEIFDDMIAHYP 88
>d2nn6e2 d.101.1.1 (E:192-285) Exosome complex exonuclease RRP42
{Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 25.2 bits (55), Expect = 7.6
Identities = 7/47 (14%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 79 KTWMDGLSLQDYNEHCKLNEGTVNDMLELAKHYNKALEEEEKMSPEQ 125
K L + E + + L + +EE + P++
Sbjct: 50 KVGKGSLDPESIFEMMETGKRVGK---VLHASLQSVVHKEESLGPKR 93
Score = 25.2 bits (55), Expect = 9.6
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 309 QSVKELAKHYNKALEEEEKMSPEQ 332
+ K L + +EE + P++
Sbjct: 70 RVGKVLHASLQSVVHKEESLGPKR 93
>d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 251
Score = 26.6 bits (59), Expect = 7.7
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 343 PKRHLEEKVDTLMTANIIQCLGGKLIEPLWGSMEMMTFFAIV 384
+ ++EK++ I GG L E + + F
Sbjct: 53 DRDVVKEKINYYKDWGIKVYPGGTLFEYAYSKGKFDEFLNEC 94
>d1vkba_ d.269.1.1 (A:) Hypothetical protein LOC223267 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 151
Score = 25.9 bits (56), Expect = 9.9
Identities = 10/73 (13%), Positives = 22/73 (30%)
Query: 159 NMERLLRLGSGMPGLSQAPPVSDGPVVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLML 218
+M + G+ G + D A + ++ ++ G +P +
Sbjct: 2 HMAHIFVYGTLKRGQPNHKVMLDHSHGLAAFRGRGCTVESFPLVIAGEHNIPWLLYLPGK 61
Query: 219 GEFVDEYTVRVID 231
G V V +
Sbjct: 62 GHCVTGEIYEVDE 74
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.407
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,176,748
Number of extensions: 104592
Number of successful extensions: 324
Number of sequences better than 10.0: 1
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 24
Length of query: 574
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 484
Effective length of database: 1,171,896
Effective search space: 567197664
Effective search space used: 567197664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.2 bits)