RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15736
(70 letters)
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 30.8 bits (69), Expect = 0.019
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 38 PEIEVERSWVHSGEGYEAQLVCIVHAEPHA 67
P ++ +S H EG A LVC + P
Sbjct: 84 PRVKAVKSSEHINEGETAMLVCKSESVPPV 113
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 27.1 bits (60), Expect = 0.33
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 38 PEIEVERSWVHSGEGYEAQLVCIVHAEPH 66
P+I + + EG +A + C PH
Sbjct: 93 PDITGHKRSENKNEGQDAMMYCKSVGYPH 121
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 26.8 bits (59), Expect = 0.40
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 38 PEIEVERSWVHSGEGYEAQLVCIVHAEP 65
P I ++ H+ G + Q+ C + + P
Sbjct: 15 PIISSTQT-QHALHGEKGQIKCFIRSTP 41
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 26.6 bits (59), Expect = 0.48
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 38 PEIEVERSWVHSGEGYEAQLVCIVHAEP 65
P+I V EG +A L C P
Sbjct: 101 PKITRPPINVKIIEGLKAVLPCTTMGNP 128
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 26.2 bits (57), Expect = 0.75
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 31 RRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPH 66
R K +P + V + +G +VC +
Sbjct: 182 REAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVST 217
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 24.7 bits (54), Expect = 2.5
Identities = 6/31 (19%), Positives = 16/31 (51%)
Query: 4 EDHEEKEYQEEEEEEPEKDKEEVRRRRRRNQ 34
++++++ EE+ + KE+ + R Q
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 24.5 bits (53), Expect = 3.1
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 38 PEIEVERSWVHSGEGYEAQLVCIVHAEP 65
P+I++E S + G AQ+VC
Sbjct: 187 PQIKLEPSKLVRIRGEAAQIVCSATNAE 214
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 24.5 bits (53), Expect = 3.1
Identities = 5/26 (19%), Positives = 6/26 (23%)
Query: 38 PEIEVERSWVHSGEGYEAQLVCIVHA 63
P + G A L C
Sbjct: 108 PSKPTVNIPSSATIGNRAVLTCSEQD 133
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 24.2 bits (52), Expect = 3.9
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 38 PEIEVERSWVHSGEGYEAQLVCIVHAEP 65
P + + + + G AQ+VC +
Sbjct: 187 PALTLVPAELVRIRGEAAQIVCSASSVD 214
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 24.1 bits (53), Expect = 5.0
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 1 MEGEDHEEKEYQEEEEEEPEKDKEEVR 27
+ E E EEEE +++KE+
Sbjct: 213 VWSSKTETVEEPMEEEEAAKEEKEDSD 239
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL
protein transport, transport, cytoplasm, GTPase
activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
PDB: 2l1l_B
Length = 1049
Score = 24.1 bits (51), Expect = 5.3
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 3 GEDHEEKEYQEEEEEEPEKDKEEVRRRRRR 32
G D + + E++E + R + +
Sbjct: 1008 GGDPTDYLFAEDKENALMEQNRLEREKAAK 1037
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 23.7 bits (51), Expect = 5.3
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 7 EEKEYQEEEEEEPEKDKEEVRRRRRRNQK 35
EKE + EE K+++ +++ + QK
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQK 179
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 24.1 bits (52), Expect = 5.3
Identities = 6/33 (18%), Positives = 17/33 (51%)
Query: 4 EDHEEKEYQEEEEEEPEKDKEEVRRRRRRNQKN 36
++++++ EE+ + KE+ + R Q+
Sbjct: 381 KENQKRRETEEKMRRAKLAKEKAEKERLEKQQK 413
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A
{Homo sapiens}
Length = 291
Score = 24.0 bits (52), Expect = 5.5
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 37 LPEIEVERSWVHSGEGYEAQLVCIVHAEP 65
L ++ + S V G C EP
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAIGEP 32
>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl
hydrolase, glycogen debraching; HET: GLC A16; 2.8A
{Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A
Length = 718
Score = 23.8 bits (52), Expect = 5.8
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 18 EPEKDKEEVRRRRRRNQKNL 37
E + + V R + ++N
Sbjct: 508 EGPTNDQNVVICREKQKRNF 527
>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase,
glycosidase, ISO-amylase glycosyl hydrolase, glycogen
metabolism; 2.25A {Escherichia coli k-12}
Length = 657
Score = 23.7 bits (52), Expect = 6.1
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 18 EPEKDKEEVRRRRRRNQKNL 37
E ++ RRR + L
Sbjct: 480 EGLGGSLDLVERRRDSIHAL 499
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C*
1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F*
1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C
1xmo_C* 1xmq_C* 1xnq_C* ...
Length = 239
Score = 23.4 bits (51), Expect = 7.0
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 3 GEDHEEKEYQEEEEEEPEKDKEEVRRRRRRNQKN 36
GE ++ + E +++ RR R +K
Sbjct: 205 GEVIGGQKPKARPELPKAEERPRRRRPAVRVKKE 238
>2v1o_A Cytosolic acyl coenzyme A thioester hydrolase; acyl-COA
thioesterase 7, serine esterase, protein structure,
domain duplication, ACOT7, macrophage; HET: COA; 1.78A
{Mus musculus}
Length = 151
Score = 23.5 bits (51), Expect = 7.6
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 11 YQEEEEEEPEKDKEEVRRRRRRNQK 35
Y +E+EE + + E ++ R K
Sbjct: 127 YLRQEQEEEGRKRYEAQKLERMETK 151
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation,
GTP-binding, HOST-virus interaction, nucleotide-binding,
phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB:
3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Length = 1073
Score = 23.3 bits (49), Expect = 8.4
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 3 GEDHEEKEYQEEEEEEPEKDKEEVRRRRRR 32
GED + + EE E + +EE + +
Sbjct: 1029 GEDTSD-LFLEERETALRQAQEEKHKLQMS 1057
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 23.4 bits (51), Expect = 8.7
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 4 EDHEEKEYQEEEEEEPEKDKEEVRRRRRRNQ 34
+ + E E+E E +DK R+N
Sbjct: 525 DAKKLNELIEKENEMLAQDKLVAETEDRKNT 555
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_B
Length = 241
Score = 23.3 bits (50), Expect = 9.0
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 2 EGEDHEEKEYQEEEEEEPEKDKEE 25
+ E +E EEEE + EE
Sbjct: 199 YHKTLPTAEQKEAEEEEGAEGAEE 222
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 23.2 bits (50), Expect = 9.1
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 1 MEGEDHEEKEYQEEEEEEPEKDKEEVRRRRRRNQKNLPEIEVE 43
+ EKE EEE+ +++K++ ++ ++K E E
Sbjct: 207 LVVTKEVEKEVPIPEEEKKDEEKKDEEKKDEDDKKPKLEEVDE 249
>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2,
protein structure initiative; 1.70A {Bacteroides
thetaiotaomicron}
Length = 240
Score = 23.1 bits (50), Expect = 9.4
Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 6/72 (8%)
Query: 5 DHEEKEYQE------EEEEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLV 58
DH YQ E E + KEE+ R+R +E E E + A +
Sbjct: 44 DHYYTLYQRRNTELWLEYGEGKVTKEELNRQRFFYPLQAVGVEDEALAERFSEDFFAIIP 103
Query: 59 CIVHAEPHADPL 70
PHA +
Sbjct: 104 TKSGLMPHAKEV 115
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.305 0.128 0.368
Gapped
Lambda K H
0.267 0.0574 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,122,948
Number of extensions: 53905
Number of successful extensions: 377
Number of sequences better than 10.0: 1
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 93
Length of query: 70
Length of database: 6,701,793
Length adjustment: 40
Effective length of query: 30
Effective length of database: 5,584,953
Effective search space: 167548590
Effective search space used: 167548590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 51 (23.8 bits)