RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15736
         (70 letters)



>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 101

 Score = 27.3 bits (59), Expect = 0.089
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 38 PEIEVERSWVHSGEGYEAQLVCIVHAEPH 66
          P ++  +S  H  EG  A LVC   + P 
Sbjct: 3  PRVKAVKSSEHINEGETAMLVCKSESVPP 31


>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
          transmembrane domain M {Rabbit (Oryctolagus cuniculus)
          [TaxId: 9986]}
          Length = 472

 Score = 25.8 bits (56), Expect = 0.46
 Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 2/26 (7%)

Query: 22 DKEEVRRRRRRNQKN-LPEIEVERSW 46
            ++V+R   +   N LP  E  +S 
Sbjct: 25 TPDQVKRHLEKYGHNELPAEE-GKSL 49


>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans)
          [TaxId: 6239]}
          Length = 93

 Score = 22.2 bits (46), Expect = 6.0
 Identities = 5/28 (17%), Positives = 8/28 (28%)

Query: 38 PEIEVERSWVHSGEGYEAQLVCIVHAEP 65
          P+I      +    G+   L       P
Sbjct: 3  PKILTASRKIKIKAGFTHNLEVDFIGAP 30


>d7odca2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 240

 Score = 22.3 bits (46), Expect = 7.3
 Identities = 5/21 (23%), Positives = 10/21 (47%)

Query: 22 DKEEVRRRRRRNQKNLPEIEV 42
          D  ++ ++  R  K LP +  
Sbjct: 1  DLGDILKKHLRWLKALPRVTP 21


>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase
           {Helicobacter pylori [TaxId: 210]}
          Length = 255

 Score = 22.2 bits (46), Expect = 8.2
 Identities = 8/31 (25%), Positives = 12/31 (38%)

Query: 6   HEEKEYQEEEEEEPEKDKEEVRRRRRRNQKN 36
            + K    E   +   D+  V+    R QKN
Sbjct: 212 FQTKPIDTETLAQLGYDEILVKNITSRIQKN 242


>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different
          modules [TaxId: 9606]}
          Length = 98

 Score = 21.7 bits (45), Expect = 9.9
 Identities = 7/28 (25%), Positives = 11/28 (39%)

Query: 38 PEIEVERSWVHSGEGYEAQLVCIVHAEP 65
          P+I         G+G +A     V  +P
Sbjct: 5  PKIFERIQSQTVGQGSDAHFRVRVVGKP 32


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.305    0.128    0.368 

Gapped
Lambda     K      H
   0.267   0.0424    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 277,086
Number of extensions: 11049
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 35
Length of query: 70
Length of database: 2,407,596
Length adjustment: 38
Effective length of query: 32
Effective length of database: 1,885,856
Effective search space: 60347392
Effective search space used: 60347392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 47 (22.7 bits)