RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15737
(444 letters)
>1aye_A PCPA2, procarboxypeptidase A2; serine protease, zymogen, hydrolase;
1.80A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1 PDB: 1o6x_A
Length = 401
Score = 359 bits (923), Expect = e-122
Identities = 104/318 (32%), Positives = 162/318 (50%), Gaps = 28/318 (8%)
Query: 128 WGGSTSN---IDIMVKADKVAAVKQYLEKAKLTYEVILEDVQRAINEENPEISEEELAVL 184
W T+ + V V AVK +LE + Y +++EDVQ +++EN E+
Sbjct: 37 WKSPTTPGETAHVRVPFVNVQAVKVFLESQGIAYSIMIEDVQVLLDKENEEMLFNR---- 92
Query: 185 TGRKGHRMTFHKYHRMEDIHGYLDYLAQTYPQLVTLTDIGRSLEGRPLRLVKISSGVPNA 244
+ F YH +E+I +D L +P LV+ +IG S E RP+ ++K S+G +
Sbjct: 93 RRERSGNFNFGAYHTLEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFSTG-GDK 151
Query: 245 KAFWIDGGIHAREWITPATVSFILSELVENREAQED---YIKKIDFYVLPITNPDGYEYT 301
A W+D GIHAREW+T AT + +++V + + +D ++LP+TNPDGY ++
Sbjct: 152 PAIWLDAGIHAREWVTQATALWTANKIVSDYGKDPSITSILDALDIFLLPVTNPDGYVFS 211
Query: 302 HTTERLWRKNRRKSPKGDSCSGIDLVTYDSDEEDEKTIDLNRNWGFHWGGVGSSKEQCQQ 361
T R+WRK R K G C G+D NRNW +GG G+S C
Sbjct: 212 QTKNRMWRKTRSKVS-GSLCVGVDP---------------NRNWDAGFGGPGASSNPCSD 255
Query: 362 IYAGTGPFSEPETQAVSRFILANNANMKAFVTFHSYGQYILYPWGYNKKVPPDYADLDRV 421
Y G SE E +++ FI ++ +KAF+ HSY Q +++P+GY D+ +L V
Sbjct: 256 SYHGPSANSEVEVKSIVDFIK-SHGKVKAFIILHSYSQLLMFPYGYKCTKLDDFDELSEV 314
Query: 422 GRAAAEAMRVAGGGAYTF 439
+ AA+++R G Y
Sbjct: 315 AQKAAQSLRSLHGTKYKV 332
>1pca_A Procarboxypeptidase A PCPA; hydrolase(C-terminal peptidase); HET:
CIT; 2.00A {Sus scrofa} SCOP: d.58.3.1 PDB: 1pyt_A
Length = 403
Score = 355 bits (913), Expect = e-120
Identities = 110/317 (34%), Positives = 174/317 (54%), Gaps = 26/317 (8%)
Query: 128 WGGSTSN---IDIMVKADKVAAVKQYLEKAKLTYEVILEDVQRAINEENPEISEEELAVL 184
W G ID+ V + AVK +LE + Y +++EDVQ ++EE ++ +
Sbjct: 38 WRGPARPGFPIDVRVPFPSIQAVKVFLEAHGIRYTIMIEDVQLLLDEEQEQMFA---SQG 94
Query: 185 TGRKGHRMTFHKYHRMEDIHGYLDYLAQTYPQLVTLTDIGRSLEGRPLRLVKISSGVPNA 244
R + YH +E+I+ ++D L +P LV+ IGRS EGRP+ ++K S+G N
Sbjct: 95 RARTTSTFNYATYHTLEEIYDFMDILVAEHPALVSKLQIGRSYEGRPIYVLKFSTGGSNR 154
Query: 245 KAFWIDGGIHAREWITPATVSFILSELVENREAQEDY---IKKIDFYVLPITNPDGYEYT 301
A WID GIH+REWIT A+ + ++ EN + + +D ++ +TNP+G+ +T
Sbjct: 155 PAIWIDSGIHSREWITQASGVWFAKKITENYGQNSSFTAILDSMDIFLEIVTNPNGFAFT 214
Query: 302 HTTERLWRKNRRKSPKGDSCSGIDLVTYDSDEEDEKTIDLNRNWGFHWGGVGSSKEQCQQ 361
H+ RLWRK R K+ G C G D NRNW +GG G+S C +
Sbjct: 215 HSDNRLWRKTRSKAS-GSLCVG---------------SDSNRNWDAGFGGAGASSSPCAE 258
Query: 362 IYAGTGPFSEPETQAVSRFILANNANMKAFVTFHSYGQYILYPWGYNKKVPPDYADLDRV 421
Y G P SE E ++++ F+ NN N+KAF++ HSY Q +LYP+GY + P D ++L+++
Sbjct: 259 TYHGKYPNSEVEVKSITDFV-KNNGNIKAFISIHSYSQLLLYPYGYKTQSPADKSELNQI 317
Query: 422 GRAAAEAMRVAGGGAYT 438
++A A++ G +Y
Sbjct: 318 AKSAVAALKSLYGTSYK 334
>1kwm_A Procarboxypeptidase B; hydrolase; HET: CIT; 1.60A {Homo sapiens}
SCOP: c.56.5.1 d.58.3.1 PDB: 3glj_A 1nsa_A 1pba_A
Length = 402
Score = 354 bits (910), Expect = e-120
Identities = 95/310 (30%), Positives = 157/310 (50%), Gaps = 29/310 (9%)
Query: 133 SNIDIMVKADKVAAVKQYLEKAKLTYEVILEDVQRAINEENPEISEEELAVLTGRKGHRM 192
S +D VKA+ V+ L++ +L Y+V++ +++ + + +
Sbjct: 50 STVDFRVKAEDTVTVENVLKQNELQYKVLISNLRNVVEAQFDS----------RVRATGH 99
Query: 193 TFHKYHRMEDIHGYLDYLAQTYPQLVTLTDIGRSLEGRPLRLVKISSGVPNAKAFWIDGG 252
++ KY++ E I + +A P L++ + IG + EGR + L+K+ N A ++D G
Sbjct: 100 SYEKYNKWETIEAWTQQVATENPALISRSVIGTTFEGRAIYLLKVGKAGQNKPAIFMDCG 159
Query: 253 IHAREWITPATVSFILSELVENREAQED---YIKKIDFYVLPITNPDGYEYTHTTERLWR 309
HAREWI+PA + + E V + + K+DFYVLP+ N DGY YT T R WR
Sbjct: 160 FHAREWISPAFCQWFVREAVRTYGREIQVTELLNKLDFYVLPVLNIDGYIYTWTKSRFWR 219
Query: 310 KNRRKSPKGDSCSGIDLVTYDSDEEDEKTIDLNRNWGFHWGGVGSSKEQCQQIYAGTGPF 369
K R G SC G D NRN+ W +G+S+ C + Y G
Sbjct: 220 KTRSTHT-GSSCIGTDP---------------NRNFDAGWCEIGASRNPCDETYCGPAAE 263
Query: 370 SEPETQAVSRFILANNANMKAFVTFHSYGQYILYPWGYNKKVPPDYADLDRVGRAAAEAM 429
SE ET+A++ FI +++KA++T HSY Q ++YP+ Y K+ + A+L+ + +A + +
Sbjct: 264 SEKETKALADFIRNKLSSIKAYLTIHSYSQMMIYPYSYAYKLGENNAELNALAKATVKEL 323
Query: 430 RVAGGGAYTF 439
G YT+
Sbjct: 324 ASLHGTKYTY 333
>2boa_A Carboxypeptidase A4; metalloprocarboxypeptidase, X-RAY zymogen,
metalloprotease, exopropeptidase, hydrolase; HET: NAG;
2.20A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1
Length = 404
Score = 351 bits (901), Expect = e-118
Identities = 107/311 (34%), Positives = 163/311 (52%), Gaps = 24/311 (7%)
Query: 133 SNIDIMVKADKVAAVKQYLEKAKLTYEVILEDVQRAINEENPEISEEELAVLTGRKGHRM 192
+D++V + + A K +L L Y V +ED+Q ++ E+ E+ E R +
Sbjct: 45 RPVDVLVPSVSLQAFKSFLRSQGLEYAVTIEDLQALLDNEDDEMQHNEGQ---ERSSNNF 101
Query: 193 TFHKYHRMEDIHGYLDYLAQTYPQLVTLTDIGRSLEGRPLRLVKISSGVP-NAKAFWIDG 251
+ YH +E I+ +D +A +P L IG S E RP+ ++K S+G A W++
Sbjct: 102 NYGAYHSLEAIYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFSTGKGVRRPAVWLNA 161
Query: 252 GIHAREWITPATVSFILSELVENREAQED---YIKKIDFYVLPITNPDGYEYTHTTERLW 308
GIH+REWI+ AT + ++V + + ++K+D ++LP+ NPDGY YT T RLW
Sbjct: 162 GIHSREWISQATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGYVYTQTQNRLW 221
Query: 309 RKNRRKSPKGDSCSGIDLVTYDSDEEDEKTIDLNRNWGFHWGGVGSSKEQCQQIYAGTGP 368
RK R ++P G SC G D NRNW + G G+S C ++Y G
Sbjct: 222 RKTRSRNP-GSSCIGADP---------------NRNWNASFAGKGASDNPCSEVYHGPHA 265
Query: 369 FSEPETQAVSRFILANNANMKAFVTFHSYGQYILYPWGYNKKVPPDYADLDRVGRAAAEA 428
SE E ++V FI + N K F+ HSY Q ++YP+GY+ K PD +LD+V R AA+A
Sbjct: 266 NSEVEVKSVVDFI-QKHGNFKGFIDLHSYSQLLMYPYGYSVKKAPDAEELDKVARLAAKA 324
Query: 429 MRVAGGGAYTF 439
+ G Y
Sbjct: 325 LASVSGTEYQV 335
>3dgv_A TAFI, carboxypeptidase B2; blood coagulation, fibrinolysis, protein
S glycoprotein, hydrolase, metal-binding,
metalloprotease, PR secreted, zymogen; HET: NAG NDG FUL
BMA; 2.50A {Bos taurus} PDB: 3osl_A 3d68_A* 3d66_A*
3d67_A*
Length = 401
Score = 346 bits (888), Expect = e-116
Identities = 101/313 (32%), Positives = 165/313 (52%), Gaps = 29/313 (9%)
Query: 133 SNIDIMVKADKVAAVKQYLEKAKLTYEVILEDVQRAINEENPEISEEELAVLTGRKGHRM 192
+ V A V+ VK +L +++ + V++E+V+ I ++ + +
Sbjct: 44 YEVHFFVNASDVSNVKAHLNASRIPFRVLVENVEDLIRQQTSNDTIS-------PRASSS 96
Query: 193 TFHKYHRMEDIHGYLDYLAQTYPQLVTLTDIGRSLEGRPLRLVKISSGVPNAK-AFWIDG 251
+ +YH + +I+ +++ + + YP +V IG S E PL ++K+S AK A WID
Sbjct: 97 YYEQYHSLNEIYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKEQRAKNAMWIDC 156
Query: 252 GIHAREWITPATVSFILSELVENREAQE---DYIKKIDFYVLPITNPDGYEYTHTTERLW 308
GIHAREWI+PA + + + ++ + +K +DFY++P+ N DGY+YT +R+W
Sbjct: 157 GIHAREWISPAFCLWFVGSVTYYYGKEKMHTNLLKHMDFYIMPVVNVDGYDYTWKKDRMW 216
Query: 309 RKNRRKSPKGDSCSGIDLVTYDSDEEDEKTIDLNRNWGF-HWGGVGSSKEQCQQIYAGTG 367
RKNR ++C G DL NRN+ HW G G+S C +IY GT
Sbjct: 217 RKNRSLHE-KNACVGTDL---------------NRNFASKHWCGEGASSSSCSEIYCGTY 260
Query: 368 PFSEPETQAVSRFILANNANMKAFVTFHSYGQYILYPWGYNKKVPPDYADLDRVGRAAAE 427
P SEPE +AV+ F+ N ++KA+++ HSY Q I++P+ Y++ D+ +L V R A
Sbjct: 261 PESEPEVKAVADFLRRNIKHIKAYISMHSYSQKIVFPYSYSRSRSKDHEELSLVAREAVF 320
Query: 428 AMRVAGGG-AYTF 439
AM YT
Sbjct: 321 AMENIHRNIRYTH 333
>1jqg_A Carboxypeptidase A; Pro-protein, hydrolase; 2.50A {Helicoverpa
armigera} SCOP: c.56.5.1 d.58.3.1
Length = 433
Score = 345 bits (886), Expect = e-116
Identities = 86/321 (26%), Positives = 153/321 (47%), Gaps = 29/321 (9%)
Query: 128 WGGSTSN--IDIMVKADKVAAVKQYLEKAKLTYEVILEDVQRAINEENPEISEEELAVLT 185
W + ++V K + +L+++ + Y++ +E+V+ + E+ ++ A +
Sbjct: 52 WSDAVPGRPGKVLVPKFKREIFENFLKQSGVQYKLEVENVKEQLELEDQLLAAA--AAKS 109
Query: 186 GRKGHRMTFHKYHRMEDIHGYLDYLAQTYPQLVTLTDIGRSLEGRPLRLVKISSGV---P 242
R++F K H E++ YL LA+ +P +VT+ + G+S EGR ++ ++IS+
Sbjct: 110 NSTRSRLSFDKIHSYEEVDAYLQELAKEFPNVVTVVEGGKSFEGRSIKYLRISTTNFQDA 169
Query: 243 NAKAFWIDGGIHAREWITPATVSFILSELVENREAQEDYIKKIDFYVLPITNPDGYEYTH 302
+ + +H REW+T + + +LV + + I ID+ +LP+ NPDGY +T
Sbjct: 170 SKPVVMMQSLLHCREWVTLPATLYAIHKLVIDVTESD-LINNIDWIILPVANPDGYVHTF 228
Query: 303 TTERLWRKNRRKSPKGDS-CSGIDLVTYDSDEEDEKTIDLNRNWGFHWGGVGSSKEQCQQ 361
+R WRKNR + C G+DL NRN+G +WG SS C
Sbjct: 229 GGDRYWRKNRATGYMAGNLCMGVDL---------------NRNFGMNWGT-ASSSSVCSD 272
Query: 362 IYAGTGPFSEPETQAVSRFILANNANMKAFVTFHSYGQYILYPWGYNKKVPPDYADLDRV 421
+ G FSEPE+ + I + M ++ HS+G ILY +G +P + L +
Sbjct: 273 TFHGRSAFSEPESSVIRDIIAEHRNRMALYLDIHSFGSMILYGYGNG-VLPSNALQLHLI 331
Query: 422 GRAAAEAM---RVAGGGAYTF 439
G A+A+ + + Y
Sbjct: 332 GVQMAQAIDRVKWSSNKDYIV 352
>2c1c_A Carboxypeptidase B; insect, metalloprotease, insensitive, plant
inhibitors, hydrolase; 2.3A {Helicoverpa zea} SCOP:
c.56.5.1
Length = 312
Score = 333 bits (855), Expect = e-113
Identities = 94/252 (37%), Positives = 137/252 (54%), Gaps = 21/252 (8%)
Query: 192 MTFHKYHRMEDIHGYLDYLAQTYPQLVTLTDIGRSLEGRPLRLVKISSGV---PNAKAFW 248
+ + Y +E I YLDY+ + YP + T+ + S EGRP++ +KIS+ N +
Sbjct: 1 LPYDNYQELEVIDEYLDYIGEKYPDVATVVNAAESFEGRPIKYIKISTTNFEDENKPVIF 60
Query: 249 IDGGIHAREWITPATVSFILSELVENREAQEDYIKKIDFYVLPITNPDGYEYTHTTERLW 308
IDGGIHAREWI+P +V++ + +LVE+ D ++K D+ +LP+ NPDGY+YT T ER W
Sbjct: 61 IDGGIHAREWISPPSVTWAIHKLVEDVTEN-DLLEKFDWILLPVVNPDGYKYTFTNERFW 119
Query: 309 RKNRRKS--PKGDSCSGIDLVTYDSDEEDEKTIDLNRNWGFHWGGVGSSKEQCQQIYAGT 366
RK R + P C G D NRN+ F W +G+S C IYAGT
Sbjct: 120 RKTRSTNNNPLSQICRGADG---------------NRNFDFVWNSIGTSNSPCSDIYAGT 164
Query: 367 GPFSEPETQAVSRFILANNANMKAFVTFHSYGQYILYPWGYNKKVPPDYADLDRVGRAAA 426
FSE ET+ V + + A M ++T HS+G ILYPWG++ + + L VG A A
Sbjct: 165 SAFSEVETRVVRDILHEHLARMALYLTMHSFGSMILYPWGHDGSLSQNALGLHTVGVAMA 224
Query: 427 EAMRVAGGGAYT 438
++ +
Sbjct: 225 SVIQSNALPNFP 236
>1m4l_A Carboxypeptidase A; metalloproteinase, metalloexoproteinase,
hydrolase; 1.25A {Bos taurus} SCOP: c.56.5.1 PDB: 1cpx_A
1arl_A 1f57_A 2rfh_A* 3i1u_A* 1arm_A 1ell_P 1elm_P
1ee3_P 1zlh_A 2abz_A 3hlp_A 3huv_A 1yme_A* 3fvl_A*
3fx6_A* 2ctc_A* 1hdq_A 2ctb_A* 3kgq_A* ...
Length = 307
Score = 330 bits (847), Expect = e-111
Identities = 89/257 (34%), Positives = 141/257 (54%), Gaps = 20/257 (7%)
Query: 186 GRKGHRMTFHKYHRMEDIHGYLDYLAQTYPQLVTLTDIGRSLEGRPLRLVKISSGVPNAK 245
R + + YH +++I+ ++D L +PQLV+ IGRS EGRP+ ++K S+G N
Sbjct: 1 ARSTNTFNYATYHTLDEIYDFMDLLVAEHPQLVSKLQIGRSYEGRPIYVLKFSTGGSNRP 60
Query: 246 AFWIDGGIHAREWITPATVSFILSELVENREAQEDY---IKKIDFYVLPITNPDGYEYTH 302
A WID GIH+REWIT AT + + E+ + + +D ++ +TNPDG+ +TH
Sbjct: 61 AIWIDLGIHSREWITQATGVWFAKKFTEDYGQDPSFTAILDSMDIFLEIVTNPDGFAFTH 120
Query: 303 TTERLWRKNRRKSPKGDSCSGIDLVTYDSDEEDEKTIDLNRNWGFHWGGVGSSKEQCQQI 362
+ RLWRK R + C G +D NRNW +G G+S C +
Sbjct: 121 SQNRLWRKTRSVTS-SSLCVG---------------VDANRNWDAGFGKAGASSSPCSET 164
Query: 363 YAGTGPFSEPETQAVSRFILANNANMKAFVTFHSYGQYILYPWGYNKKVPPDYADLDRVG 422
Y G SE E +++ F+ ++ N KAF++ HSY Q +LYP+GY + PD +L++V
Sbjct: 165 YHGKYANSEVEVKSIVDFV-KDHGNFKAFLSIHSYSQLLLYPYGYTTQSIPDKTELNQVA 223
Query: 423 RAAAEAMRVAGGGAYTF 439
++A A++ G +Y +
Sbjct: 224 KSAVAALKSLYGTSYKY 240
>2bo9_A Carboxypeptidase A4; metallocarboxypeptidase, X-RAY endogenous
protein inhibitor, metalloprotease carboxypeptidase,
hydrolase; HET: NAG; 1.6A {Homo sapiens} SCOP: c.56.5.1
PDB: 4a94_A 2pcu_A*
Length = 308
Score = 326 bits (837), Expect = e-110
Identities = 93/254 (36%), Positives = 138/254 (54%), Gaps = 21/254 (8%)
Query: 190 HRMTFHKYHRMEDIHGYLDYLAQTYPQLVTLTDIGRSLEGRPLRLVKISSGVPNAK-AFW 248
+ + YH +E I+ +D +A +P L IG S E RP+ ++K S+G + A W
Sbjct: 3 NNFNYGAYHSLEAIYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFSTGKGVRRPAVW 62
Query: 249 IDGGIHAREWITPATVSFILSELVENRE---AQEDYIKKIDFYVLPITNPDGYEYTHTTE 305
++ GIH+REWI+ AT + ++V + + A ++K+D ++LP+ NPDGY YT T
Sbjct: 63 LNAGIHSREWISQATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGYVYTQTQN 122
Query: 306 RLWRKNRRKSPKGDSCSGIDLVTYDSDEEDEKTIDLNRNWGFHWGGVGSSKEQCQQIYAG 365
RLWRK R ++P G SC G D NRNW + G G+S C ++Y G
Sbjct: 123 RLWRKTRSRNP-GSSCIGADP---------------NRNWNASFAGKGASDNPCSEVYHG 166
Query: 366 TGPFSEPETQAVSRFILANNANMKAFVTFHSYGQYILYPWGYNKKVPPDYADLDRVGRAA 425
SE E ++V FI + N K F+ HSY Q ++YP+GY+ K PD +LD+V R A
Sbjct: 167 PHANSEVEVKSVVDFI-QKHGNFKGFIDLHSYSQLLMYPYGYSVKKAPDAEELDKVARLA 225
Query: 426 AEAMRVAGGGAYTF 439
A+A+ G Y
Sbjct: 226 AKALASVSGTEYQV 239
>1z5r_A Procarboxypeptidase B; exopeptidase, hydrolase; 1.40A {Sus scrofa}
SCOP: c.56.5.1 PDB: 1zg7_A* 1zg8_A* 1zg9_A* 2jew_A*
2piy_A* 2piz_A* 2pj0_A* 2pj1_A* 2pj2_A* 2pj3_A* 2pj4_A*
2pj5_A* 2pj6_A* 2pj7_A* 2pj8_A* 2pj9_A* 2pja_A* 2pjb_A*
2pjc_A* 1zli_A ...
Length = 306
Score = 325 bits (834), Expect = e-109
Identities = 87/251 (34%), Positives = 135/251 (53%), Gaps = 19/251 (7%)
Query: 192 MTFHKYHRMEDIHGYLDYLAQTYPQLVTLTDIGRSLEGRPLRLVKISSGVPNAKAFWIDG 251
++ KY+ E I + + P L++ T IG + G + L+K+ PN A ++D
Sbjct: 4 HSYEKYNNWETIEAWTKQVTSENPDLISRTAIGTTFLGNNIYLLKVGKPGPNKPAIFMDC 63
Query: 252 GIHAREWITPATVSFILSELVENRE---AQEDYIKKIDFYVLPITNPDGYEYTHTTERLW 308
G HAREWI+ A + + E V +++ K+DFYVLP+ N DGY YT T R+W
Sbjct: 64 GFHAREWISHAFCQWFVREAVLTYGYESHMTEFLNKLDFYVLPVLNIDGYIYTWTKNRMW 123
Query: 309 RKNRRKSPKGDSCSGIDLVTYDSDEEDEKTIDLNRNWGFHWGGVGSSKEQCQQIYAGTGP 368
RK R + G +C G D NRN+ W G+S + C + Y G+
Sbjct: 124 RKTRSTNA-GTTCIGTDP---------------NRNFDAGWCTTGASTDPCDETYCGSAA 167
Query: 369 FSEPETQAVSRFILANNANMKAFVTFHSYGQYILYPWGYNKKVPPDYADLDRVGRAAAEA 428
SE ET+A++ FI N +++KA++T HSY Q ILYP+ Y+ K+P + A+L+ + +AA +
Sbjct: 168 ESEKETKALADFIRNNLSSIKAYLTIHSYSQMILYPYSYDYKLPENNAELNNLAKAAVKE 227
Query: 429 MRVAGGGAYTF 439
+ G YT+
Sbjct: 228 LATLYGTKYTY 238
>1dtd_A Carboxypeptidase A2; carboxypeptidase A2, leech carboxypeptidase
inhibitor, hydrolase/hydrolase inhibitor complex; HET:
GLU; 1.65A {Homo sapiens} SCOP: c.56.5.1
Length = 303
Score = 322 bits (826), Expect = e-108
Identities = 86/249 (34%), Positives = 132/249 (53%), Gaps = 20/249 (8%)
Query: 194 FHKYHRMEDIHGYLDYLAQTYPQLVTLTDIGRSLEGRPLRLVKISSGVPNAKAFWIDGGI 253
F YH +E+I +D L +P LV+ +IG S E RP+ ++K S+G + A W+D GI
Sbjct: 3 FGAYHTLEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFSTG-GDKPAIWLDAGI 61
Query: 254 HAREWITPATVSFILSELVENREAQED---YIKKIDFYVLPITNPDGYEYTHTTERLWRK 310
HAREW+T AT + +++V + + +D ++LP+TNPDGY ++ T R+WRK
Sbjct: 62 HAREWVTQATALWTANKIVSDYGKDPSITSILDALDIFLLPVTNPDGYVFSQTKNRMWRK 121
Query: 311 NRRKSPKGDSCSGIDLVTYDSDEEDEKTIDLNRNWGFHWGGVGSSKEQCQQIYAGTGPFS 370
R K G C G +D NRNW +GG G+S C Y G S
Sbjct: 122 TRSKVSAGSLCVG---------------VDPNRNWDAGFGGPGASSNPCSDSYHGPSANS 166
Query: 371 EPETQAVSRFILANNANMKAFVTFHSYGQYILYPWGYNKKVPPDYADLDRVGRAAAEAMR 430
E E +++ FI ++ +KAF+ HSY Q +++P+GY D+ +L V + AA+++
Sbjct: 167 EVEVKSIVDFI-KSHGKVKAFIILHSYSQLLMFPYGYKCTKLDDFDELSEVAQKAAQSLS 225
Query: 431 VAGGGAYTF 439
G Y
Sbjct: 226 RLHGTKYKV 234
>3d4u_A Tafia, carboxypeptidase B2; protease-inhibitor complex,
glycoprotein, hydrolase, metal-binding, metalloprotease,
protease, secret zymogen; 1.70A {Bos taurus} PDB: 3lms_A
Length = 309
Score = 313 bits (804), Expect = e-105
Identities = 91/254 (35%), Positives = 141/254 (55%), Gaps = 22/254 (8%)
Query: 192 MTFHKYHRMEDIHGYLDYLAQTYPQLVTLTDIGRSLEGRPLRLVKISSGVPNAK-AFWID 250
+ +YH + +I+ +++ + + YP +V IG S E PL ++K+S AK A WID
Sbjct: 4 SYYEQYHSLNEIYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKEQRAKNAMWID 63
Query: 251 GGIHAREWITPATVSFILSELVENREAQE---DYIKKIDFYVLPITNPDGYEYTHTTERL 307
GIHAREWI+PA + + + ++ + +K +DFY++P+ N DGY+YT +R+
Sbjct: 64 CGIHAREWISPAFCLWFVGSVTYYYGKEKMHTNLLKHMDFYIMPVVNVDGYDYTWKKDRM 123
Query: 308 WRKNRRKSPKGDSCSGIDLVTYDSDEEDEKTIDLNRNWGF-HWGGVGSSKEQCQQIYAGT 366
WRKNR ++C G DL NRN+ HW G G+S C +IY GT
Sbjct: 124 WRKNRSLHE-KNACVGTDL---------------NRNFASKHWCGEGASSSSCSEIYCGT 167
Query: 367 GPFSEPETQAVSRFILANNANMKAFVTFHSYGQYILYPWGYNKKVPPDYADLDRVGRAAA 426
P SEPE +AV+ F+ N ++KA+++ HSY Q I++P+ Y++ D+ +L V R A
Sbjct: 168 YPESEPEVKAVADFLRRNIKHIKAYISMHSYSQKIVFPYSYSRSRSKDHEELSLVAREAV 227
Query: 427 EAMR-VAGGGAYTF 439
AM + YT
Sbjct: 228 FAMENIHRNIRYTH 241
>3prt_A Carboxypeptidase T; hydrolase; 1.66A {Thermoactinomyces vulgaris}
PDB: 1obr_A 3qnv_A
Length = 323
Score = 301 bits (773), Expect = e-100
Identities = 78/260 (30%), Positives = 109/260 (41%), Gaps = 31/260 (11%)
Query: 194 FHKYHRMEDIHGYLDYLAQTYPQLVTLTDIGRSLEGRPLRLVKISSGV---PNAKAFWID 250
YH ++ ++ +A YP +V IG+S EGR L VKIS V N
Sbjct: 6 DSGYHNYNEMVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGTDENEPEVLYT 65
Query: 251 GGIHAREWITPATVSFILSELVENREAQE---DYIKKIDFYVLPITNPDGYEY--THTTE 305
HARE +T + L +N + + + Y++ NPDG EY + +
Sbjct: 66 ALHHAREHLTVEMALYTLDLFTQNYNLDSRITNLVNNREIYIVFNINPDGGEYDISSGSY 125
Query: 306 RLWRKNRRKSPKGDSCSGIDLVTYDSDEEDEKTIDLNRNWGFHWGGV-GSSKEQCQQIYA 364
+ WRKNR+ + G S G DLNRN+G+ WG GSS + Y
Sbjct: 126 KSWRKNRQPNS-GSSYVG---------------TDLNRNYGYKWGCCGGSSGSPSSETYR 169
Query: 365 GTGPFSEPETQAVSRFI----LANNANMKAFVTFHSYGQYILYPWGYNKKVPPD--YADL 418
G FS PET A+ FI + +K +TFH+Y + ILYP+ Y P D
Sbjct: 170 GRSAFSAPETAAMRDFINSRVVGGKQQIKTLITFHTYSELILYPYSYTYTDVPSDMTQDD 229
Query: 419 DRVGRAAAEAMRVAGGGAYT 438
V + A M G
Sbjct: 230 FNVFKTMANTMAQTNGYTPQ 249
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold,
C-terminal, A transthyretin-like domain, hydrolase; HET:
NAG GEM; 2.70A {Drosophila melanogaster}
Length = 435
Score = 247 bits (632), Expect = 9e-78
Identities = 48/258 (18%), Positives = 80/258 (31%), Gaps = 39/258 (15%)
Query: 192 MTFHKYHRMEDIHGYLDYLAQTYPQLVTLTDIGRSLEGRPLRLVKISSGV----PNAKAF 247
+ Y E + L + YP + +GRSLEGR L ++IS
Sbjct: 35 LQQPHYASQEQLEDLFAGLEKAYPNQAKVHFLGRSLEGRNLLALQISRNTRSRNLLTPPV 94
Query: 248 WIDGGIHAREWITPATVSFILSELVENREAQEDY---IKKIDFYVLPITNPDGYEYTHTT 304
+H E + + ++ L+ N E D + D Y++P NPDGY +
Sbjct: 95 KYIANMHGDETVGRQLLVYMAQYLLGNHERISDLGQLVNSTDIYLVPTMNPDGYALSQEG 154
Query: 305 ERLWRKNRRKSPKGDSCSGIDLVTYDSDEEDEKTIDLNRNWGFHWGGVGSSKEQCQQIYA 364
N + + IDLNR++ ++
Sbjct: 155 NCESLPNYV---GRGNAAN---------------IDLNRDFPDRLE--------QSHVHQ 188
Query: 365 GTGPFSEPETQAVSRFILANNANMKAFVTFHSYGQYILYPWGYNKKVPPDYADL----DR 420
+PET A+ +I++ FH YP+ + + DR
Sbjct: 189 LRAQSRQPETAALVNWIVSK--PFVLSANFHGGAVVASYPYDNSLAHNECCEESLTPDDR 246
Query: 421 VGRAAAEAMRVAGGGAYT 438
V + A
Sbjct: 247 VFKQLAHTYSDNHPIMRK 264
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc
peptidase, transthyretin-like domain, processing,
peptide modification, hydrolase; HET: NAG; 2.10A {Homo
sapiens}
Length = 439
Score = 230 bits (588), Expect = 3e-71
Identities = 49/261 (18%), Positives = 89/261 (34%), Gaps = 34/261 (13%)
Query: 191 RMTFHKYHRMEDIHGYLDYLAQTYPQLVTLTDIGRSLEGRPLRLVKISSGV----PNAKA 246
++ F ++HR +D+ L + P + + IGRS+EGR L +++ S P
Sbjct: 1 KLAF-RHHRYDDLVRTLYKVQNECPGITRVYSIGRSVEGRHLYVLEFSDHPGIHEPLEPE 59
Query: 247 FWIDGGIHAREWITPATVSFILSELVENREAQEDYIKKI----DFYVLPITNPDGYEYTH 302
G +H E + + + L E + I ++ ++LP NPDGYE
Sbjct: 60 VKYVGNMHGNEALGRELMLQLSEFLCEEFRNRNQRIVQLIQDTRIHILPSMNPDGYEVAA 119
Query: 303 TTERLWRKNRRKSPKGDSCSGIDLVTYDSDEEDEKTIDLNRNW-----GFHWGGVGSSKE 357
K ++ +G +DLNRN+ ++
Sbjct: 120 AQG--PNKPGYLVG-RNNANG---------------VDLNRNFPDLNTYIYYNEKYGGPN 161
Query: 358 QCQQIYAGTGPFSEPETQAVSRFILANNANMKAFVTFHSYGQYILYPWGYNKKVPPDYAD 417
+ EPET+AV R++ + N H YP+ + +
Sbjct: 162 HHLPLPDNWKSQVEPETRAVIRWMHSF--NFVLSANLHGGAVVANYPYDKSFEHRVRGVR 219
Query: 418 LDRVGRAAAEAMRVAGGGAYT 438
+ + Y+
Sbjct: 220 RTASTPTPDDKLFQKLAKVYS 240
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent
protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta
specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Length = 380
Score = 220 bits (563), Expect = 4e-68
Identities = 47/252 (18%), Positives = 87/252 (34%), Gaps = 46/252 (18%)
Query: 196 KYHRMEDIHGYLDYLAQTYPQLVTLTDIGRSLEGRPLRLVKISSGV----PNAKAFWIDG 251
++H D+ +L A YP + L +G+S+E R L +++IS F G
Sbjct: 9 RHHHFSDMEIFLRRYANEYPSITRLYSVGKSVELRELYVMEISDNPGIHEAGEPEFKYIG 68
Query: 252 GIHAREWITPATVSFILSELVENREAQEDY---IKKIDFYVLPITNPDGYEYTHTTERLW 308
+H E + + ++ L +N + ++ +++P NPDGYE + +R
Sbjct: 69 NMHGNEVVGRELLLNLIEYLCKNFGTDPEVTDLVQSTRIHIMPSMNPDGYEKSQEGDRGG 128
Query: 309 RKNRRKSPKGDSCSGIDLVTYDSDEEDEKTIDLNRNWGFHWGGVGSSKEQCQQIYAGTGP 368
R + + DLNRN+ +
Sbjct: 129 TVGRN------NSNN---------------YDLNRNFPDQFF--------------QVTD 153
Query: 369 FSEPETQAVSRFILANNANMKAFVTFHSYGQYILYPWGYNKKVPPDYADL--DRVGRAAA 426
+PET AV ++ H + YP+ +++ Y+ D V + A
Sbjct: 154 PPQPETLAVMSWLKTY--PFVLSANLHGGSLVVNYPFDDDEQGIAIYSKSPDDAVFQQLA 211
Query: 427 EAMRVAGGGAYT 438
+ Y
Sbjct: 212 LSYSKENKKMYQ 223
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease,
zinc, lipoprotein, hydrolase, structural proteomics in
europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP:
b.3.2.1 c.56.5.1
Length = 426
Score = 203 bits (517), Expect = 6e-61
Identities = 45/256 (17%), Positives = 79/256 (30%), Gaps = 53/256 (20%)
Query: 196 KYHRMEDIHGYLDYLAQTYPQLVTLTDIGRSLEGRPLRLVKISSGV----PNAKAFWIDG 251
YHR E + +L +AQ Y + L IG+S++GR L ++ + F
Sbjct: 4 NYHRQEGMEAFLKTVAQNYSSVTHLHSIGKSVKGRNLWVLVVGRFPKEHRIGIPEFKYVA 63
Query: 252 GIHAREWITPATVSFILSELVENREAQE---DYIKKIDFYVLPITNPDGYEYTHTTERLW 308
+H E + + ++ LV + + I +++P NPDG+E + +
Sbjct: 64 NMHGDETVGRELLLHLIDYLVTSDGKDPEITNLINSTRIHIMPSMNPDGFEAVKKPDCYY 123
Query: 309 RKNRRKSPKGDSCSGIDLVTYDSDEEDEKTIDLNRNWGFHWGGVGSSKEQCQQIYAGTGP 368
R + + DLNRN+ +
Sbjct: 124 SIGRE------NYNQ---------------YDLNRNFPDAFE--------------YNNV 148
Query: 369 FSEPETQAVSRFILANNANMKAFVTFHSYGQYILYPWGYNKKVP---------PDYADLD 419
+PET AV +++ H YP+ + PD
Sbjct: 149 SRQPETVAVMKWLKTE--TFVLSANLHGGALVASYPFDNGVQATGALYSRSLTPDDDVFQ 206
Query: 420 RVGRAAAEAMRVAGGG 435
+ A G
Sbjct: 207 YLAHTYASRNPNMKKG 222
>3l2n_A Peptidase M14, carboxypeptidase A; putative carboxypeptidase A,
structural genomics, joint CENT structural genomics,
JCSG; 2.39A {Shewanella denitrificans}
Length = 395
Score = 104 bits (260), Expect = 9e-25
Identities = 46/242 (19%), Positives = 76/242 (31%), Gaps = 51/242 (21%)
Query: 190 HRMTFHKYHRMEDIHGYLDYLAQ-TYPQLVTLTDIGRSLEGRPLRLVKISSGVPNAKAFW 248
Y +LD ++ LV+ +G +L+GR + LVK+ P+ K+ W
Sbjct: 120 CEAIQIAYFTPYSYERHLDLISAVQLHPLVSTEHLGLTLDGRDMTLVKVGDDDPSKKSIW 179
Query: 249 IDGGIHAREWITPATVSFILSELVENREAQ-EDYIKKIDFYVLPITNPDGYEYTHTTERL 307
I H E + V +L++L++N + + K +FY++P NPDG H
Sbjct: 180 ITARQHPGETMAEWLVEGLLNQLLDNDCPTSKALLDKANFYIVPNMNPDGSVRGH----- 234
Query: 308 WRKNRRKSPKGDSCSGIDLVTYDSDEEDEKTIDLNRNWGFHWGGVGSSKEQCQQIYAGTG 367
R N G +LNR W
Sbjct: 235 LRTN---------AVG---------------ANLNREWQ------------------TPS 252
Query: 368 PFSEPETQAVSRFILANNANMKAFVTFHSYGQYILYPWGYNKKVPPDYADLDRVGRAAAE 427
PE V + + F H + +P L + +
Sbjct: 253 LERSPEVYYVVNKMHET--GVDLFYDVHGDEGLPYVFLAGCEGIPNYSDKLASLQQDFVA 310
Query: 428 AM 429
A+
Sbjct: 311 AL 312
>3b2y_A Metallopeptidase containing CO-catalytic metalloa site;
metallopeptidase containing CO-catalytic metalloactive
site; 1.74A {Shewanella denitrificans OS217} PDB:
3ieh_A*
Length = 275
Score = 82.9 bits (204), Expect = 4e-18
Identities = 26/160 (16%), Positives = 52/160 (32%), Gaps = 36/160 (22%)
Query: 198 HRMEDIHGYLDYLAQTYPQLVTLTDIGRSLEGRPLRLVKISSGVPNAKAFWIDGGIHARE 257
+ DI + LA+ +L + S++ + L + +S + + I G H E
Sbjct: 20 CQSNDIDAFYAQLAEEVNRLGLKKNTLGSVDSFAINLYQSASQRSDLPSLLISSGFHGEE 79
Query: 258 WITPATVSFILSELVENREAQEDYIKKIDFYVLPITNPDGYEYTHTTERLWRKNRRKSPK 317
P + L L Q ++++ +LP+ NP G++ R +
Sbjct: 80 AAGPWGMLHFLRGL------QPALFERVNLSLLPLVNPTGFK----------AGHRFNRF 123
Query: 318 GDSCSGIDLVTYDSDEEDEKTIDLNRNWGFHWGGVGSSKE 357
G + NR + G ++
Sbjct: 124 G--------------------ENPNRGFTLENGKPTPNEH 143
>2qvp_A Uncharacterized protein; putative metallopeptidase, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 2.00A {Shewanella amazonensis}
Length = 275
Score = 72.8 bits (178), Expect = 1e-14
Identities = 43/236 (18%), Positives = 70/236 (29%), Gaps = 53/236 (22%)
Query: 196 KYHRMEDIHGYLDYLAQTYPQLVTLTDIGRSLEGRPLRLVKISSGVPNAKAFWIDGGIHA 255
+ DI + LA +L + I PL L++ I G H
Sbjct: 17 FECQSTDIQRFYSLLAIETERLGLGSKILGQAGHHPLYLLQSPGQKAGLPNLLISAGFHG 76
Query: 256 REWITPATVSFILSELVENREAQEDYIKKIDFYVLPITNPDGYEYTHTTERLWRKNRRKS 315
E P + LS+L + K+++ VLP+ NP G+ K R +
Sbjct: 77 EESAGPWGLLHFLSQL------DGELFKRVNLSVLPLVNPTGFA----------KGHRFN 120
Query: 316 PKGDSCSGIDLVTYDSDEEDEKTIDLNRNWGFHWGGVGSSKEQCQQIYAGTGPFSEPETQ 375
G + NR + G A G + E +
Sbjct: 121 ELG--------------------ENPNRGFFIENGK------------AKPGADTSAEGR 148
Query: 376 AVSRFI-LANNANMKAFVTFHSYGQYILYPWGYNKKVPPDYADLDRVGRAAAEAMR 430
+ L A+ +T H + +L Y P A R + +A+
Sbjct: 149 ILLEHAHLLQVASRDGILTCH---EDVLMTDTYVYTFEPSQAP-GRFSHSLRDALG 200
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.4 bits (164), Expect = 4e-12
Identities = 83/420 (19%), Positives = 122/420 (29%), Gaps = 160/420 (38%)
Query: 55 EHKFLNAARANDLESL-NSLAVIEKGVL----EFFKNKSDARLGLKRKEFKYLDGAKVLT 109
E+ +L ND+ +L L L E KN AR+ KR K + A L
Sbjct: 92 ENCYL---EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA--LF 146
Query: 110 SHISPAAFNLY--FSDVVEKWGGSTSNIDIMVKADKVAAVKQYL-EKAKL--TYEVILED 164
+ L F GG + D Y E L TY V++ D
Sbjct: 147 RAVGEGNAQLVAIF-------GGQGNTDD-------------YFEELRDLYQTYHVLVGD 186
Query: 165 VQRAINEENPEISEEELAVLTGRKGHRMTFHKYHRMEDIHGYL---------DYLAQ--- 212
+ I + S E L+ L R + + +I +L DYL
Sbjct: 187 L---I-----KFSAETLSELI-RTTLDAEKV-FTQGLNILEWLENPSNTPDKDYLLSIPI 236
Query: 213 TYPQLVTLTDIG------RSLEGRPLRLVKISSG-------VPNAKA------------- 246
+ P L+ + + + L P L G + A A
Sbjct: 237 SCP-LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 247 --------FWIDGGIHAREW-----ITPATV-----------SFILSELVEN--REAQED 280
F+I G+ E + P+ + S +LS + N +E +D
Sbjct: 296 VRKAITVLFFI--GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS--ISNLTQEQVQD 351
Query: 281 YIKKIDFYVLPITNPDGYEYTHTTERLWRKNRRKSPKGDSCSG--IDLVTYDSDEEDEKT 338
Y+ K TN L N K SG L + K
Sbjct: 352 YVNK--------TNSHLPAGKQVEISL--VN---GAKNLVVSGPPQSLYGLNLTLRKAK- 397
Query: 339 IDLNRNWGFHWGGVGSSKEQCQQIYAGTGPFSEPETQAVSRFILANNANMKAFVT--FHS 396
S +Q + PFSE + + +RF L V FHS
Sbjct: 398 -------------APSGLDQSRI------PFSERKLKFSNRF-LP--------VASPFHS 429
Score = 44.7 bits (105), Expect = 6e-05
Identities = 64/396 (16%), Positives = 109/396 (27%), Gaps = 173/396 (43%)
Query: 52 IQREHKFLNAARANDL------ESLNSLAVIEKGVL------------EFFKNKSDA--- 90
IQ H ++ A+ L +G++ FF + A
Sbjct: 244 IQLAH-YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 91 --RLGLKRKEFKYLDGAKVLTSHISPAAFNLYFSDVVEKWGGSTSNIDIMVKADKVAAVK 148
+G++ E + S L D +E G S M+ ++
Sbjct: 303 LFFIGVRCYE---------AYPNTSLPPSIL--EDSLENNEGVPSP---ML------SIS 342
Query: 149 QYLEKAKLTYEVILEDVQRAINEENPEISEEE---LAVLTGRKGHRMTFHKYHRMEDIHG 205
LT E VQ +N+ N + + ++++ G K
Sbjct: 343 ------NLT----QEQVQDYVNKTNSHLPAGKQVEISLVNGAK----------------- 375
Query: 206 YLDYLAQTYPQLVTLTDIG--RSLEG--RPLRLVKISSGVPNAKAFWIDGGIHAREWITP 261
LV ++ G +SL G LR K SG+ ++ P
Sbjct: 376 ----------NLV-VS--GPPQSLYGLNLTLRKAKAPSGLDQSRI--------------P 408
Query: 262 ATVSFILSELVENREAQEDYIKKIDFYV--LPITNPDGYEYTHT------TERL------ 307
SE +K+ F LP+ +P + H+ ++ +
Sbjct: 409 ------FSE------------RKLKFSNRFLPVASP--F---HSHLLVPASDLINKDLVK 445
Query: 308 ----WRKNRRKSPKGDSCSGIDLVTYDSDEEDEKTIDLNRNWGFHW-------------- 349
+ + P D+ G DL S E+ +D W
Sbjct: 446 NNVSFNAKDIQIPVYDTFDGSDLRVL-SGSISERIVDCIIRLPVKWETTTQFKATHILDF 504
Query: 350 --GGVGSSKEQCQQIYAGTGPFSEPETQAVSRFILA 383
GG + GTG R I+A
Sbjct: 505 GPGGASGLGVLTHRNKDGTG----------VRVIVA 530
Score = 36.2 bits (83), Expect = 0.024
Identities = 34/196 (17%), Positives = 53/196 (27%), Gaps = 87/196 (44%)
Query: 323 GIDLVTYDS--------DEEDEKTIDLNRNWGF---------------HWGGVGS----- 354
G+DL Y + + D D +GF H+GG
Sbjct: 1632 GMDL--YKTSKAAQDVWNRADNHFKD---TYGFSILDIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 355 ------------SKEQCQQIYAGTGP------FSEPE--------TQ----AVSR--F-I 381
K + ++I+ F + TQ + + F
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFED 1746
Query: 382 LANNANMKAFVTF--HSYGQY-----------------ILYPWG--YNKKVPPDYADLDR 420
L + + A TF HS G+Y +++ G VP D
Sbjct: 1747 LKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSN 1806
Query: 421 VGRAAAEAMRVAGGGA 436
G A RVA +
Sbjct: 1807 YGMIAINPGRVAASFS 1822
Score = 33.9 bits (77), Expect = 0.12
Identities = 48/266 (18%), Positives = 71/266 (26%), Gaps = 121/266 (45%)
Query: 138 MVKA--DKVAAVKQYLEKA----KLTYEVILEDVQRAINEENPEISEEELAVL-TGRKGH 190
M A + +A K TY + D+ NP L + G KG
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVI----NNPV----NLTIHFGGEKGK 1682
Query: 191 R-------MTFHKYH----RMEDIHGYLDY-------------LAQTY---PQLVTLT-- 221
R M F + E I ++ L+ T P L +
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA 1742
Query: 222 ---DI-------------GRSL-E--------GR-PL----RLVK-----ISSGVPNAKA 246
D+ G SL E + +V + VP +
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDEL 1802
Query: 247 FWIDGGIHAREWITPATVSFILSE----------------LVE----NREAQ-------- 278
+ G+ A I P V+ S+ LVE N E Q
Sbjct: 1803 GRSNYGMIA---INPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDL 1859
Query: 279 ---E------DYIK--KIDFYVLPIT 293
+ ++IK KID L +
Sbjct: 1860 RALDTVTNVLNFIKLQKIDIIELQKS 1885
>3k2k_A Putative carboxypeptidase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative;
2.49A {Burkholderia mallei atcc 23344}
Length = 403
Score = 63.7 bits (154), Expect = 4e-11
Identities = 43/226 (19%), Positives = 74/226 (32%), Gaps = 34/226 (15%)
Query: 190 HRMTFHKYHRMEDIHGYLDYLAQTYPQLVTLTDIGRSLEGRPLRLVKISSGV---PNAKA 246
+ + + E +L + Q ++ ++GR++EGRP+ LV + + K
Sbjct: 125 IHYAYFEPYSEERHSEFLGAVQQMP--QASVVELGRTVEGRPMSLVVLGTPDEAGAAKKK 182
Query: 247 FWIDGGIHAREWITPATVSFILSELVENREAQED-----YIKKIDFYVLPITNPDGYEYT 301
WI H E + + ++ LV + D FY++P NPDG +
Sbjct: 183 VWIIARQHPGESMAEWFIEGLVKRLVGWGDWSGDPVARKLYDHATFYIVPNMNPDGSVHG 242
Query: 302 HTTERLWRKNRRKSPKGDSCSGIDL------VTYDSDEEDEKTIDLNRNWGFHWGGVGSS 355
+ R N +G +L + E D G
Sbjct: 243 N-----LRTN---------AAGANLNREWMEPDAERSPEVLVVRDAIHAIGCDLFFDIHG 288
Query: 356 KEQCQQIYA----GTGPFSEPETQAVSRFILANNANMKAFVTFHSY 397
E ++A F+E + S FI + F H Y
Sbjct: 289 DEDLPYVFAAGSEMLPGFTEQQRVEQSAFIDSFKRASPDFQDEHGY 334
>4a37_A Metallo-carboxypeptidase; metallo-protease, hydrolase; 1.60A
{Pseudomonas aeruginosa} PDB: 4a38_A 4a39_A*
Length = 388
Score = 61.3 bits (148), Expect = 2e-10
Identities = 46/288 (15%), Positives = 84/288 (29%), Gaps = 54/288 (18%)
Query: 145 AAVKQYLEKAKLTYEVILEDVQRAINEENPEISEEELAVLTGRKGHRMTFHKYHRMEDIH 204
A Y V D +R + ++ L + + + H
Sbjct: 72 AGQSAYSHAWSGYQAVASYDGERWFRVPSQYDADGLHFQLEPEESEVRFAYFEPYSRERH 131
Query: 205 GYLDYLAQTYPQLVTLTDIGRSLEGRPLRLVKISSGVPNAKAFWIDGGIHAREWITPATV 264
L A V +G S++GR + L+++ + W+ H E + +
Sbjct: 132 ARLVERALGIEG-VERLAVGTSVQGRDIELLRVRRHPDSHLKLWVIAQQHPGEHMAEWFM 190
Query: 265 SFILSELVENR-EAQEDYIKKIDFYVLPITNPDGYEYTHTTERLWRKNRRKSPKGDSCSG 323
++ L + ++K D Y++P NPDG + + R N +G
Sbjct: 191 EGLIERLQRPDDTEMQRLLEKADLYLVPNMNPDGAFHGN-----LRTN---------AAG 236
Query: 324 IDLVTYDSDEEDEKTIDLNRNWGFHWGGVGSSKEQCQQIYAGTGPFSEPETQAVSRFILA 383
DLNR W E + PE V + +
Sbjct: 237 ---------------QDLNRAW----------LEPSAERS--------PEVWFVQQEMKR 263
Query: 384 NNANMKAFVTFHSYGQ---YILYPWGYNKKVPPDYADLDRVGRAAAEA 428
+ ++ F+ H + N P L++ R A
Sbjct: 264 HGVDL--FLDIHGDEEIPHVFAAGCEGNPGYTPRLERLEQRFREELMA 309
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.3 bits (127), Expect = 1e-07
Identities = 55/388 (14%), Positives = 114/388 (29%), Gaps = 158/388 (40%)
Query: 7 DIVC--LLVSKNANI-NIVNGEGRTPRDVCKHN-----DEARKLLLAAEKTEGIQREHKF 58
++ C LL ++ + + ++ T + H+ DE + LLL K+
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL------------KY 310
Query: 59 LNAARANDL----ESLNSLAVIEKGVLEFFKNKSDARLGLKR-KEFKYLDGAKVLT---- 109
L+ R DL + N + + E ++ GL +K+++ K+ T
Sbjct: 311 LDC-RPQDLPREVLTTNPRRL--SIIAESIRD------GLATWDNWKHVNCDKLTTIIES 361
Query: 110 --SHISPAAFNLYFSDVVEKWGGSTSNIDIMVKADKVAAVKQYLEKAKLTYEVILEDVQR 167
+ + PA + F + +V + A + + L +
Sbjct: 362 SLNVLEPAEYRKMFDRL---------------------SV--FPPSAHIPTIL-LSLIWF 397
Query: 168 AINEENPEISEEELAV--LTGRKGHRMTFHKYHRMEDIHG-YLDYLAQTYPQLVTLTDIG 224
+ + + + +L L ++ T I YL+ +
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTIS-------IPSIYLELKVK------------ 438
Query: 225 RSLEGRPLRLVKISSGVPNAKAFWIDGGIHAREWITPATVSFILSELVENREAQEDYIKK 284
+ N A +H +V++ + +
Sbjct: 439 ----------------LENEYA------LHRS--------------IVDHYNIPKTF--- 459
Query: 285 IDFYVLPITNPDGYEYTH---------TTERL-----------W--RKNRRKSPKGDSCS 322
D L D Y Y+H ER+ + +K R S ++
Sbjct: 460 -DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 323 GI-----DLVTY-----DSDEEDEKTID 340
I L Y D+D + E+ ++
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVN 546
Score = 36.8 bits (84), Expect = 0.017
Identities = 30/217 (13%), Positives = 54/217 (24%), Gaps = 84/217 (38%)
Query: 7 DIVCLLVSKNANINIVNGEGRTPRDVCKHNDEARK-----LLLAAEKTEGIQREHKFLNA 61
+V L + V K E+ L K E H+ +
Sbjct: 406 VVVNKLHKYSL--------------VEKQPKESTISIPSIYLELKVKLENEYALHRSI-- 449
Query: 62 ARANDLESLNSLAVIEKGVLEFFKNKSD-------------ARLGLKRKEFK--YLD--- 103
++ N + + D + F+ +LD
Sbjct: 450 -----VDHYNIPKTFDSD--DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
Query: 104 -GAKVLTSHISPAAFNLYFSDVVEKWGGSTSNIDIMVKADKVAAVKQYLEKAKLTYEVIL 162
K+ H S A W S S ++ + + K Y+ YE ++
Sbjct: 503 LEQKI--RHDSTA------------WNASGSILNTLQQLKFY---KPYICDNDPKYERLV 545
Query: 163 ED--------------------VQRAINEENPEISEE 179
++ A+ E+ I EE
Sbjct: 546 NAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
Score = 32.1 bits (72), Expect = 0.48
Identities = 20/165 (12%), Positives = 48/165 (29%), Gaps = 54/165 (32%)
Query: 155 KLTYEVILEDVQRAINE--ENPEISEEELAVLTGRKGHRMTFHKYHRMEDIHGYLDYLAQ 212
+ Y+ IL + A + + ++ + ++L+ + ++ I D ++
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE-----------IDHIIMSKDAVSG 63
Query: 213 TYPQLVTLTDIGRSLEGRPLRLVKISSGVPNAKAFWIDGGIHAREWITPATVSFILSEL- 271
T TL + + F + + F++S +
Sbjct: 64 TLRLFWTLLSKQEEM----------------VQKFV--EEVLRINY------KFLMSPIK 99
Query: 272 VENREAQEDYIKKIDFYVLPITNPDGYEYTHTTERLWRKNRRKSP 316
E R+ P Y +RL+ N+ +
Sbjct: 100 TEQRQ--------------PSMMTRMYIEQR--DRLYNDNQVFAK 128
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 43.2 bits (103), Expect = 7e-05
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDVCKHNDEARKLLLAAE 47
+++ CLL+ A+ N EG+ P ++ +L L E
Sbjct: 179 EELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLERE 220
Score = 36.3 bits (85), Expect = 0.014
Identities = 6/42 (14%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 5 EKDIVCLLVSKNANINIVNGEGRTPRDV--CKHNDEARKLLL 44
E + L + + +++ R + + + KL+L
Sbjct: 209 ESPLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVL 250
Score = 35.9 bits (84), Expect = 0.020
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
V +L+ A +N V + TP
Sbjct: 49 LSCVKILLKHGAQVNGVTADWHTP 72
Score = 35.5 bits (83), Expect = 0.020
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+ V L++ NI+ TP
Sbjct: 114 VECVNSLIAYGGNIDHKISHLGTP 137
Score = 34.7 bits (81), Expect = 0.037
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+ + L+S+ +NI+ + +P
Sbjct: 16 QLSLRNLISQGWAVNIITADHVSP 39
Score = 31.6 bits (73), Expect = 0.44
Identities = 6/24 (25%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
D V LL+ A++ + + +P
Sbjct: 82 WDCVNLLLQHGASVQPES-DLASP 104
Score = 27.8 bits (63), Expect = 7.0
Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+ V L+ A++N G +P
Sbjct: 147 RACVKKLLESGADVNQGKG-QDSP 169
>1vjq_A Designed protein; structural genomics, engineered protein, PSI,
protein struct initiative, structural genomics of
pathogenic protozoa CONS SGPP; 2.10A {} SCOP: k.43.1.1
Length = 79
Score = 40.2 bits (94), Expect = 7e-05
Identities = 6/38 (15%), Positives = 16/38 (42%)
Query: 135 IDIMVKADKVAAVKQYLEKAKLTYEVILEDVQRAINEE 172
+ I++ +D V + L+ + + V +E+
Sbjct: 41 VVILIPSDMVEWFLEMLKAKGIPFTVYVEEGGSENKYF 78
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 42.9 bits (102), Expect = 1e-04
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDV-CKHNDEARKLLL 44
+++ CLL+ A+ N EG+ P ++ + A+ L
Sbjct: 235 EELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLE 274
Score = 35.5 bits (83), Expect = 0.024
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
V +L+ A +N V + TP
Sbjct: 105 LSCVKILLKHGAQVNGVTADWHTP 128
Score = 35.5 bits (83), Expect = 0.026
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+ + L+S+ +NI+ + +P
Sbjct: 72 QLSLRNLISQGWAVNIITADHVSP 95
Score = 35.5 bits (83), Expect = 0.027
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+ V L++ NI+ TP
Sbjct: 170 VECVNSLIAYGGNIDHKISHLGTP 193
Score = 31.3 bits (72), Expect = 0.57
Identities = 6/24 (25%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
D V LL+ A++ + + +P
Sbjct: 138 WDCVNLLLQHGASVQPES-DLASP 160
Score = 29.0 bits (66), Expect = 2.9
Identities = 6/47 (12%), Positives = 16/47 (34%), Gaps = 9/47 (19%)
Query: 6 KDIVCLLVSKNANINIVNGE-----GRTPRDVCKHNDEARKLLLAAE 47
LV + +++ ++G+ G P + + L +
Sbjct: 8 HHHSSGLVPRGSHMASMDGKQGGMDGSKP----AGPRDFPGIRLLSN 50
Score = 29.0 bits (66), Expect = 3.0
Identities = 5/24 (20%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+ V L+ A++N +P
Sbjct: 203 RACVKKLLESGADVNQGK-GQDSP 225
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 40.3 bits (95), Expect = 5e-04
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDVCKHND--EARKLLLAAEKTEGIQREHKFLNAAR 63
DIV LL++K A ++ N E + D+ + K + + +L+
Sbjct: 153 ADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDED 212
Query: 64 AN 65
++
Sbjct: 213 SD 214
Score = 33.0 bits (76), Expect = 0.13
Identities = 3/24 (12%), Positives = 8/24 (33%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+ + +N ++ G T
Sbjct: 86 LSWLRECLDNRVGVNGLDKAGSTA 109
Score = 31.4 bits (72), Expect = 0.42
Identities = 8/75 (10%), Positives = 19/75 (25%), Gaps = 2/75 (2%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDVCKHNDEARKLLLAAEKTEGIQREHKFLNAARAN 65
L + +I + T + + ++ AA+
Sbjct: 25 PRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEAAKRG 84
Query: 66 DLESLNSLAVIEKGV 80
+L L ++ V
Sbjct: 85 NLSWLREC--LDNRV 97
Score = 31.1 bits (71), Expect = 0.58
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 6 KDIVCLLVSK-NANINIVNGEGRTP 29
KDIV +L ++ N +N N G T
Sbjct: 119 KDIVEMLFTQPNIELNQQNKLGDTA 143
>2gjf_A Designed protein; procarboxypeptidase, de novo protein; NMR {}
Length = 78
Score = 37.4 bits (87), Expect = 6e-04
Identities = 6/30 (20%), Positives = 16/30 (53%)
Query: 135 IDIMVKADKVAAVKQYLEKAKLTYEVILED 164
+ I++ +D V + L+ + + V +E+
Sbjct: 49 VVILIPSDMVEWFLEMLKAKGIPFTVYVEE 78
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 37.8 bits (89), Expect = 0.002
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDVCKHND--EARKLLL 44
DIV LL+S A+ N VN G P D L
Sbjct: 89 VDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPE 129
Score = 33.2 bits (77), Expect = 0.058
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+V LL+ A +N + +P
Sbjct: 56 LKVVELLLQHKALVNTTGYQNDSP 79
Score = 33.2 bits (77), Expect = 0.065
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
V L+ ++ N+ + G TP
Sbjct: 23 IPSVEYLLQNGSDPNVKDHAGWTP 46
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 37.8 bits (89), Expect = 0.002
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDVCKHND--EARKLLL 44
+ LV+ A ++I N G P D K R+
Sbjct: 118 DQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE 158
Score = 35.1 bits (82), Expect = 0.018
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+DIV L+ A+IN VN G P
Sbjct: 85 RDIVQKLLQYKADINAVNEHGNVP 108
Score = 33.9 bits (79), Expect = 0.055
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+V +L+ + A IN++N TP
Sbjct: 52 SAVVEMLIMRGARINVMNRGDDTP 75
Score = 29.7 bits (68), Expect = 1.3
Identities = 6/25 (24%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 6 KDIVCLLVSKNAN-INIVNGEGRTP 29
V L + N +N + G +P
Sbjct: 18 AVAVRLWLDNTENDLNQGDDHGFSP 42
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 38.2 bits (90), Expect = 0.003
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDVCKHND--EARKLLLAA 46
D V L +S+++++ + N EG TP N + + A
Sbjct: 190 YDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKA 232
Score = 35.9 bits (84), Expect = 0.014
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
DI +L++ +++ VN G +P
Sbjct: 157 VDIAEILLAAKCDLHAVNIHGDSP 180
Score = 35.1 bits (82), Expect = 0.032
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
DI +LV ANI+ + + RTP
Sbjct: 24 VDICHMLVQAGANIDTCSEDQRTP 47
Score = 34.7 bits (81), Expect = 0.035
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
D+V LL+SK ++INI + E
Sbjct: 124 VDLVKLLLSKGSDINIRDNEENIC 147
Score = 34.3 bits (80), Expect = 0.045
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+ V L+ A ++ + EG T
Sbjct: 57 LEAVKYLIKAGALVDPKDAEGSTC 80
Score = 30.5 bits (70), Expect = 0.82
Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 6 KDIVCLLVSKNA-NINIVNGEGRTP 29
++V L+S ++N + G TP
Sbjct: 90 YEVVQYLLSNGQMDVNCQDDGGWTP 114
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 38.2 bits (90), Expect = 0.003
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDVCKHND--EARKLLL 44
+ +L+ AN +I + R PRD+ + + +LL
Sbjct: 203 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243
Score = 35.1 bits (82), Expect = 0.031
Identities = 5/24 (20%), Positives = 16/24 (66%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+ ++ L++ +A++N V+ G++
Sbjct: 137 EGMLEDLINSHADVNAVDDLGKSA 160
Score = 34.8 bits (81), Expect = 0.037
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
D L+ +A+ NI + GRTP
Sbjct: 70 SDAAKRLLEASADANIQDNMGRTP 93
Score = 34.8 bits (81), Expect = 0.040
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
D +L+ AN ++ N TP
Sbjct: 170 VDAAVVLLKNGANKDMQNNREETP 193
Score = 29.4 bits (67), Expect = 2.4
Identities = 4/25 (16%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 6 KDIVCLLVSKNANI-NIVNGEGRTP 29
++ + + A++ N + G T
Sbjct: 36 PAVISDFIYQGASLHNQTDRTGETA 60
Score = 27.8 bits (63), Expect = 7.1
Identities = 5/25 (20%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 6 KDIVCLLVSKNA-NINIVNGEGRTP 29
+ + +L+ A +++ +G TP
Sbjct: 103 QGVFQILIRNRATDLDARMHDGTTP 127
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 38.0 bits (89), Expect = 0.003
Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 2/76 (2%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDV--CKHNDEARKLLLAAEKTEGIQREHKFLNAAR 63
++V LV A+I + + G T ++ + + + G+++ L
Sbjct: 124 PEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQV 183
Query: 64 ANDLESLNSLAVIEKG 79
E + KG
Sbjct: 184 FEYAEVDEIVEKRGKG 199
Score = 29.5 bits (67), Expect = 1.8
Identities = 6/25 (24%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 6 KDIVCLLVSKNANINIVNGE-GRTP 29
V LL A+++ + G T
Sbjct: 90 DKCVRLLAEAGADLDHRDMRGGLTA 114
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 38.2 bits (90), Expect = 0.004
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDVCKHND--EARKLLLA 45
DI L+S+ A++ VN EG TP D+ + E + +
Sbjct: 119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN 160
Score = 37.5 bits (88), Expect = 0.005
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDVCKHN 36
++ +LV ++ VN G+T DV +
Sbjct: 245 EEACRILVENLCDMEAVNKVGQTAFDVADED 275
Score = 35.2 bits (82), Expect = 0.029
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
D+V LV ANIN + EG P
Sbjct: 86 VDMVKFLVENGANINQPDNEGWIP 109
Score = 34.4 bits (80), Expect = 0.053
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+ V L+ + A+IN N +G T
Sbjct: 53 TEEVLRLLERGADINYANVDGLTA 76
Score = 33.6 bits (78), Expect = 0.11
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+D L S + N G T
Sbjct: 179 RDARQWLNSGHINDVRHAKSGGTA 202
Score = 33.2 bits (77), Expect = 0.14
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+++ LL+ ++NI + +G TP
Sbjct: 212 TEVLKLLIQARYDVNIKDYDGWTP 235
Score = 31.7 bits (73), Expect = 0.46
Identities = 8/40 (20%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDVCKHND-EARKLLL 44
+ + V K + +G C D E LL
Sbjct: 21 ETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLL 60
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 38.4 bits (90), Expect = 0.004
Identities = 6/41 (14%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDV--CKHNDEARKLLL 44
++V L+ + A++ V+ T R + ++ +
Sbjct: 326 IEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 366
Score = 34.9 bits (81), Expect = 0.042
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+ +V L+ A+ I N R+
Sbjct: 179 RRLVAYLMKAGADPTIYNKSERSA 202
Score = 30.7 bits (70), Expect = 0.86
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 6 KDIVCLLVSKN-ANINIVNGEGRTP 29
IV LV + +N + + +G+TP
Sbjct: 292 MPIVKYLVGEKGSNKDKQDEDGKTP 316
Score = 29.9 bits (68), Expect = 1.8
Identities = 6/47 (12%), Positives = 18/47 (38%), Gaps = 8/47 (17%)
Query: 6 KDIVCLLVSKN---ANINIVNGEGRTP-----RDVCKHNDEARKLLL 44
++ +++ +I ++ G T + + + KLL+
Sbjct: 212 FGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLV 258
Score = 29.9 bits (68), Expect = 1.9
Identities = 1/24 (4%), Positives = 3/24 (12%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+ + E
Sbjct: 74 DFLGDFNHTNLQIPTEPEPESPIK 97
Score = 28.4 bits (64), Expect = 4.5
Identities = 5/24 (20%), Positives = 8/24 (33%), Gaps = 1/24 (4%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
I + ++ NI RT
Sbjct: 106 YAITEPITRESVNIIDPR-HNRTV 128
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 37.4 bits (88), Expect = 0.004
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDVCKHND--EARKLLL 44
+ +L+ AN +I + R PRD+ + + +LL
Sbjct: 171 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 211
Score = 35.1 bits (82), Expect = 0.029
Identities = 5/24 (20%), Positives = 16/24 (66%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+ ++ L++ +A++N V+ G++
Sbjct: 105 EGMLEDLINSHADVNAVDDLGKSA 128
Score = 35.1 bits (82), Expect = 0.031
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
D L+ +A+ NI + GRTP
Sbjct: 38 SDAAKRLLEASADANIQDNMGRTP 61
Score = 34.3 bits (80), Expect = 0.047
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
D +L+ AN ++ N TP
Sbjct: 138 VDAAVVLLKNGANKDMQNNREETP 161
Score = 28.5 bits (65), Expect = 3.2
Identities = 5/25 (20%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 6 KDIVCLLVSKNA-NINIVNGEGRTP 29
+ + +L+ A +++ +G TP
Sbjct: 71 QGVFQILIRNRATDLDARMHDGTTP 95
Score = 27.8 bits (63), Expect = 6.0
Identities = 4/25 (16%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 6 KDIVCLLVSKNANI-NIVNGEGRTP 29
++ + + A++ N + G T
Sbjct: 4 PAVISDFIYQGASLHNQTDRTGETA 28
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 36.2 bits (85), Expect = 0.006
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDVCKHND-EARKLLL 44
+I LL+ A+ N +G TP D+ K D + + LL
Sbjct: 121 YEICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQDLLR 160
Score = 33.5 bits (78), Expect = 0.067
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
++ LLV A +N+ + TP
Sbjct: 88 YEVAELLVKHGAVVNVADLWKFTP 111
Score = 33.1 bits (77), Expect = 0.090
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+V L+ A+++ + G P
Sbjct: 55 VSVVEYLLQHGADVHAKDKGGLVP 78
Score = 30.0 bits (69), Expect = 0.82
Identities = 6/25 (24%), Positives = 9/25 (36%), Gaps = 1/25 (4%)
Query: 6 KDIVCLLVSKN-ANINIVNGEGRTP 29
+ V L + N + G TP
Sbjct: 21 VETVKKLCTVQSVNCRDIEGRQSTP 45
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 36.2 bits (85), Expect = 0.007
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
DIV LL+ ++ +INI + G TP
Sbjct: 82 TDIVGLLLERDVDINIYDWNGGTP 105
Score = 33.9 bits (79), Expect = 0.051
Identities = 2/24 (8%), Positives = 8/24 (33%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+ + ++ + + N P
Sbjct: 148 RKVQQVIENHILKLFQSNLVPADP 171
Score = 33.5 bits (78), Expect = 0.059
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
V L+++ A++ G TP
Sbjct: 115 VKCVEALLARGADLTTEADSGYTP 138
Score = 33.2 bits (77), Expect = 0.080
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 12/43 (27%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDVCKHNDEARKLLLAAEK 48
+ V L+ A+ +I+ E + L LA+
Sbjct: 49 IETVRFLLEWGADPHILAKERESA------------LSLASTG 79
Score = 29.7 bits (68), Expect = 1.1
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 6 KDIVCLLVSKNAN-INIVNGEGRTP 29
D + + K N +N + G TP
Sbjct: 15 LDQLKEHLRKGDNLVNKPDERGFTP 39
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 36.2 bits (85), Expect = 0.007
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
DIV +L+ ++N + G TP
Sbjct: 82 TDIVKMLLDCGVDVNEYDWNGGTP 105
Score = 34.7 bits (81), Expect = 0.023
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+ + + IN + EG TP
Sbjct: 16 MLYLATRIEQENVINHTDEEGFTP 39
Score = 34.7 bits (81), Expect = 0.027
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
V +L+ A+ I G
Sbjct: 115 VKCVKMLLESGADPTIETDSGYNS 138
Score = 33.9 bits (79), Expect = 0.038
Identities = 3/24 (12%), Positives = 9/24 (37%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+V L+ A+ ++ +
Sbjct: 49 IAVVEFLLQNGADPQLLGKGRESA 72
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 36.6 bits (86), Expect = 0.009
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRD--VCKHNDEARKLLLAAE 47
++ LL+ AN++ N +G + D + N L A
Sbjct: 190 TTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR 233
Score = 35.1 bits (82), Expect = 0.031
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 12/43 (27%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDVCKHNDEARKLLLAAEK 48
IV L++K ++++++ G TP L+ AA +
Sbjct: 122 TSIVAYLIAKGQDVDMMDQNGMTP------------LMWAAYR 152
Score = 34.7 bits (81), Expect = 0.041
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+V L+ A+ ++++GEG +
Sbjct: 89 LSMVVQLMKYGADPSLIDGEGCSC 112
Score = 33.9 bits (79), Expect = 0.066
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+ LV ++ + E T
Sbjct: 22 YERCRELVEAGYDVRQPDKENVTL 45
Score = 32.8 bits (76), Expect = 0.15
Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 5 EKDIVCLLVSKNANINIV-NGEGRTP 29
D LL++ N ++N+ T
Sbjct: 155 SVDPTRLLLTFNVSVNLGDKYHKNTA 180
Score = 32.0 bits (74), Expect = 0.29
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 6 KDIVCLLVSKNANINIVNGE-GRTP 29
D+V +SK A ++ + G+ TP
Sbjct: 55 IDLVKYYISKGAIVDQLGGDLNSTP 79
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 36.8 bits (86), Expect = 0.009
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRD--VCKHNDEARKLLLAA 46
D+V LL+ A++N V +G +P + + ++ L
Sbjct: 164 PDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 206
Score = 33.7 bits (78), Expect = 0.072
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+I L+ + + + G TP
Sbjct: 58 PEIAEALLGAGCDPELRDFRGNTP 81
Score = 32.1 bits (74), Expect = 0.26
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 4 TEKDIVCLLVSKNANINIVNGEGRTP 29
+++ + A +N N +TP
Sbjct: 23 LTMEVIRQVKGDLAFLNFQNNLQQTP 48
Score = 31.8 bits (73), Expect = 0.31
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 6 KDIVCLLVSKNANINIVNG-EGRTP 29
IV LLVS A++N GRT
Sbjct: 130 LGIVELLVSLGADVNAQEPCNGRTA 154
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 36.7 bits (86), Expect = 0.009
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 6 KDIVCLLVSKN-ANINIVNGEGRTPRDVCKHNDEARKLLL 44
D LLV K A ++V+ +G DV + + +K L
Sbjct: 187 GDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE-QVKKFFL 225
Score = 34.7 bits (81), Expect = 0.038
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
++ L+ A++ I + + P
Sbjct: 120 FEVSQFLIENGASVRIKDKFNQIP 143
Score = 31.6 bits (73), Expect = 0.35
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+ LL SK + + + +GR P
Sbjct: 16 FKVQELLHSKPSLLLQKDQDGRIP 39
Score = 30.5 bits (70), Expect = 0.89
Identities = 5/26 (19%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 6 KDIVCLLVSK--NANINIVNGEGRTP 29
++V L + ++N + +G T
Sbjct: 85 LEVVKSLYDRPLKPDLNKITNQGVTC 110
Score = 30.1 bits (69), Expect = 0.99
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 6 KDIVCLLVSKNANINIVNG---EGRTP 29
+I L+SK N+N+ + G TP
Sbjct: 49 HEITSFLLSKMENVNLDDYPDDSGWTP 75
Score = 28.6 bits (65), Expect = 3.0
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 6 KDIVCLLVSKNAN-INIVNGEGRTP 29
++ LL + +N + +G TP
Sbjct: 153 LKLIELLCGLGKSAVNWQDKQGWTP 177
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 35.8 bits (84), Expect = 0.010
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
D + +LV A++N+ +G G P
Sbjct: 81 LDTLKVLVEHGADVNVPDGTGALP 104
Score = 33.5 bits (78), Expect = 0.051
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
I L+ + A+ N+ + G +P
Sbjct: 48 TAIALELLKQGASPNVQDTSGTSP 71
Score = 30.1 bits (69), Expect = 0.68
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+++ LL + + + +N G+T
Sbjct: 16 QEVRRLLHRELVHPDALNRFGKTA 39
Score = 29.7 bits (68), Expect = 0.90
Identities = 5/24 (20%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+V L ++ ++++ + G TP
Sbjct: 114 TAVVSFLAAE-SDLHRRDARGLTP 136
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 34.9 bits (81), Expect = 0.010
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
D V +L++ A++ + G TP
Sbjct: 37 DDEVRILMANGADVAAKDKNGSTP 60
Score = 29.9 bits (68), Expect = 0.52
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDVCKHND 37
++V LL+ A++ + G+T D+ N
Sbjct: 70 LEVVKLLLEAGADVXAQDKFGKTAFDISIDNG 101
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 36.4 bits (85), Expect = 0.011
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 5 EKDIVCLLVSKNANINIVNGEGRTP 29
E D+V ++ + + ++ N EG T
Sbjct: 49 EFDLVQRIIYEVDDPSLPNDEGITA 73
Score = 33.0 bits (76), Expect = 0.14
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+IV LV N+N + +G TP
Sbjct: 83 TEIVKFLVQFGVNVNAADSDGWTP 106
Score = 33.0 bits (76), Expect = 0.16
Identities = 3/24 (12%), Positives = 5/24 (20%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
L + I+N
Sbjct: 152 TQCSQFLYGVQEKMGIMNKGVIYA 175
Score = 29.9 bits (68), Expect = 1.5
Identities = 3/27 (11%), Positives = 7/27 (25%), Gaps = 3/27 (11%)
Query: 6 KDIVCLLVSKNANINIVN---GEGRTP 29
+ LV A + + +
Sbjct: 116 VQVCKFLVESGAAVFAMTYSDMQTAAD 142
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 36.5 bits (84), Expect = 0.013
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 7 DIVCLLVSKNANINIVNGEGRTPRD--VCKHNDEARKLLLAAEKTEGIQREH 56
D + LL+ A + VN G T D KH+ E +LL A+ H
Sbjct: 240 DCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLH 291
Score = 32.7 bits (74), Expect = 0.21
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 8 IVCLLVSKNANINIVNGEGRTPRDVCKHND--EARKLLL 44
+V ++ +++ +G T + + KLLL
Sbjct: 208 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL 246
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 36.5 bits (84), Expect = 0.014
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
++V LV +N + G +
Sbjct: 144 LELVKHLVKHGSNRLYGDNMGESC 167
Score = 35.8 bits (82), Expect = 0.022
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRD 31
IV L+ A+ I N G P D
Sbjct: 296 ISIVDALLDYGADPFIANKSGLRPVD 321
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 34.7 bits (81), Expect = 0.014
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
D + +L A +++ + GR P
Sbjct: 91 LDTLVVLHRAGARLDVCDAWGRLP 114
Score = 34.7 bits (81), Expect = 0.015
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+ V L+ A+ N +N GR P
Sbjct: 25 VETVRQLLEAGADPNALNRFGRRP 48
Score = 30.9 bits (71), Expect = 0.39
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+ LL+ A N + T
Sbjct: 57 AQVAELLLLHGAEPNCADPATLTR 80
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 36.7 bits (86), Expect = 0.015
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+ V L+ K A+ + +G TP
Sbjct: 126 VETVLALLEKEASQACMTKKGFTP 149
Score = 36.3 bits (85), Expect = 0.017
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 12/43 (27%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDVCKHNDEARKLLLAAEK 48
++V LL+ NAN N+ G TP L +AA +
Sbjct: 93 TNMVKLLLENNANPNLATTAGHTP------------LHIAARE 123
Score = 35.9 bits (84), Expect = 0.021
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
DIV LL+ + + + G TP
Sbjct: 192 LDIVKLLLPRGGSPHSPAWNGYTP 215
Score = 35.9 bits (84), Expect = 0.022
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 12/43 (27%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDVCKHNDEARKLLLAAEK 48
++ L+ + N + +G TP L LAA++
Sbjct: 225 VEVARSLLQYGGSANAESVQGVTP------------LHLAAQE 255
Score = 35.9 bits (84), Expect = 0.026
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDV--CKHNDEARKLLL 44
DIV LL+ A+ N V+ +G TP + +L
Sbjct: 357 TDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK 397
Score = 35.5 bits (83), Expect = 0.027
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
++ L+ A +N + +TP
Sbjct: 60 TEVAKYLLQNKAKVNAKAKDDQTP 83
Score = 35.5 bits (83), Expect = 0.029
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
++V LL+SK AN N+ N G TP
Sbjct: 258 AEMVALLLSKQANGNLGNKSGLTP 281
Score = 35.2 bits (82), Expect = 0.046
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
IV L+ + A+ N+ N + TP
Sbjct: 27 LPIVKNLLQRGASPNVSNVKVETP 50
Score = 34.8 bits (81), Expect = 0.057
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+ +L+ ++ G TP
Sbjct: 291 VPVADVLIKHGVMVDATTRMGYTP 314
Score = 34.4 bits (80), Expect = 0.068
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+V L+ A++N G +P
Sbjct: 324 IKLVKFLLQHQADVNAKTKLGYSP 347
Score = 34.0 bits (79), Expect = 0.088
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+ LL+ ++A+ N G TP
Sbjct: 159 VRVAELLLERDAHPNAAGKNGLTP 182
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 35.0 bits (82), Expect = 0.015
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
D + L+ A++NI + EG P
Sbjct: 83 LDTLQTLLEFQADVNIEDNEGNLP 106
Score = 34.3 bits (80), Expect = 0.033
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+ + L+ N N+N NG GRT
Sbjct: 18 LEQLTSLLQNNVNVNAQNGFGRTA 41
Score = 33.1 bits (77), Expect = 0.078
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+I L+ + AN ++ + G
Sbjct: 50 PEIARRLLLRGANPDLKDRTGFAV 73
Score = 30.0 bits (69), Expect = 0.82
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 6 KDIVCLLVSKNA-NINIVNGEGRTP 29
+V LV A N+ N +G T
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTA 140
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 34.6 bits (81), Expect = 0.015
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
++V LL+ A++N + GRTP
Sbjct: 81 LEVVKLLLEAGADVNAKDKNGRTP 104
Score = 34.2 bits (80), Expect = 0.020
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
++V LL+ A++N + GRTP
Sbjct: 48 LEVVKLLLEAGADVNAKDKNGRTP 71
Score = 33.9 bits (79), Expect = 0.029
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
++V LL+ A++N + GRTP
Sbjct: 15 LEVVKLLLEAGADVNAKDKNGRTP 38
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 36.3 bits (85), Expect = 0.015
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP---------RDVCKHNDEARKLLLAAEK 48
++ LL+S A+ +VN G++ R+ + + LL AA +
Sbjct: 137 VEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAARE 188
Score = 35.9 bits (84), Expect = 0.020
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 5 EKDIVCLLVSKNANINIVNGEGRTP 29
E+ ++ LL N N + +G TP
Sbjct: 37 EEKLMALLTPLNVNCHASDGRKSTP 61
Score = 35.9 bits (84), Expect = 0.023
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
++ LL+ A +N ++ TP
Sbjct: 104 YEVTELLLKHGACVNAMDLWQFTP 127
Score = 35.9 bits (84), Expect = 0.024
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
D++ +L A +N ++ G+T
Sbjct: 260 NDVMEVLHKHGAKMNALDSLGQTA 283
Score = 35.5 bits (83), Expect = 0.025
Identities = 12/61 (19%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDVCKHNDEARKLLLAAEKTEGIQREHKFLNAARAN 65
LL+S ++ +I++ +G T + N+ +++L + +++ L A++A
Sbjct: 293 LQTCRLLLSYGSDPSIISLQGFTAAQM--GNEAVQQILSESTPMRTSDVDYRLLEASKAG 350
Query: 66 D 66
D
Sbjct: 351 D 351
Score = 34.8 bits (81), Expect = 0.054
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
IV LL+ A+++ + G P
Sbjct: 71 VRIVQLLLQHGADVHAKDKGGLVP 94
Score = 34.4 bits (80), Expect = 0.059
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
K + LL+ K AN+N N + TP
Sbjct: 227 KQVAELLLRKGANVNEKNKDFMTP 250
Score = 28.6 bits (65), Expect = 3.9
Identities = 4/37 (10%), Positives = 10/37 (27%), Gaps = 3/37 (8%)
Query: 11 LLVSKNANINIVNGEGRTP---RDVCKHNDEARKLLL 44
L +A + + + ++ LL
Sbjct: 9 DLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLT 45
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 36.0 bits (84), Expect = 0.016
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
V L + A + + G T
Sbjct: 58 ASTVEKLYAAGAGVLVAERGGHTA 81
Score = 35.2 bits (82), Expect = 0.031
Identities = 5/25 (20%), Positives = 8/25 (32%)
Query: 5 EKDIVCLLVSKNANINIVNGEGRTP 29
E + + N +G TP
Sbjct: 137 ENEEEPRDEDWRLQLEAENYDGHTP 161
Score = 34.8 bits (81), Expect = 0.042
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
++ LL+ A+ GRTP
Sbjct: 205 ASVLELLLKAGADPTARMYGGRTP 228
Score = 34.4 bits (80), Expect = 0.052
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+ LL + A G+ +P
Sbjct: 238 PILARLLRAHGAPEPEDGGDKLSP 261
Score = 31.7 bits (73), Expect = 0.38
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 6 KDIVCLLVSKNANINIVNGE-GRTP 29
++V LL A++N GRTP
Sbjct: 171 AEMVRLLRDAGADLNKPEPTCGRTP 195
Score = 31.4 bits (72), Expect = 0.51
Identities = 5/60 (8%), Positives = 12/60 (20%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDVCKHNDEARKLLLAAEKTEGIQREHKFLNAARAN 65
C+L+ + + + D + + E R
Sbjct: 91 HTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ 150
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 35.7 bits (83), Expect = 0.016
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 5 EKDIVCLLVSKNANINIVNGEGRTP 29
E ++V V + + + N EG T
Sbjct: 33 ELEVVQQAVKEMNDPSQPNEEGITA 57
Score = 33.4 bits (77), Expect = 0.11
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
IV L++ AN+N + G TP
Sbjct: 67 YSIVDFLITAGANVNSPDSHGWTP 90
Score = 33.4 bits (77), Expect = 0.11
Identities = 9/40 (22%), Positives = 11/40 (27%), Gaps = 1/40 (2%)
Query: 6 KDIVCLLVSKNANINIVNG-EGRTPRDVCKHNDEARKLLL 44
I LV A I +G T + C E
Sbjct: 100 TVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCA 139
Score = 31.1 bits (71), Expect = 0.52
Identities = 6/60 (10%), Positives = 12/60 (20%), Gaps = 15/60 (25%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDVCKHNDEARKLLLAAEKTEGIQREHKFLNAARAN 65
D L ++ ++N L + + E F
Sbjct: 136 ADCATYLADVEQSMGLMNSGAVYA------------LWDYSAEF---GDELSFREGESVT 180
Score = 27.2 bits (61), Expect = 8.6
Identities = 4/28 (14%), Positives = 9/28 (32%)
Query: 2 SHTEKDIVCLLVSKNANINIVNGEGRTP 29
S D + ++ + +G T
Sbjct: 164 SAEFGDELSFREGESVTVLRRDGPEETD 191
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 36.4 bits (85), Expect = 0.016
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+D+ V ++N+ + E P
Sbjct: 224 EDVAMRFVEMGIDVNMEDNEHTVP 247
Score = 36.0 bits (84), Expect = 0.018
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
D V L+ + I N G T
Sbjct: 33 TDEVRRLIETGVSPTIQNRFGCTA 56
Score = 35.6 bits (83), Expect = 0.030
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDV--CKHNDEARKLLLA 45
++++ LL K + G K +++ LA
Sbjct: 303 QEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLA 344
Score = 34.5 bits (80), Expect = 0.056
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+++ +LV A+ + TP
Sbjct: 153 LEMIKILVQLGASPTAKDKADETP 176
Score = 33.3 bits (77), Expect = 0.13
Identities = 3/29 (10%), Positives = 10/29 (34%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDVCK 34
+ + ++ +A + + V K
Sbjct: 336 PAVKRMKLAPSAPVRTRSRSRARSSAVSK 364
Score = 31.0 bits (71), Expect = 0.74
Identities = 5/24 (20%), Positives = 9/24 (37%), Gaps = 2/24 (8%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
D L S ++ + G+ P
Sbjct: 66 VDTAKYLASVGEVHSLWH--GQKP 87
Score = 28.3 bits (64), Expect = 5.1
Identities = 3/29 (10%), Positives = 13/29 (44%), Gaps = 5/29 (17%)
Query: 6 KDIVCLLV-----SKNANINIVNGEGRTP 29
++ + L++ + ++ N +G +
Sbjct: 186 REALDLMMDTVPSKSSLRLDYANKQGNSH 214
Score = 27.9 bits (63), Expect = 6.5
Identities = 6/44 (13%), Positives = 10/44 (22%), Gaps = 1/44 (2%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDV-CKHNDEARKLLLAAEK 48
+ L+ K I V + AA+
Sbjct: 257 VLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADP 300
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 35.5 bits (83), Expect = 0.018
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+DIV LL+ A+ +I + GRT
Sbjct: 158 QDIVKLLMENGADQSIKDNSGRTA 181
Score = 34.7 bits (81), Expect = 0.030
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 12/43 (27%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDVCKHNDEARKLLLAAEK 48
K + +L ++ V+ EG TP L +A
Sbjct: 19 KKVKEILQDTTYQVDEVDTEGNTP------------LNIAVHN 49
Score = 33.6 bits (78), Expect = 0.068
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 12/43 (27%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDVCKHNDEARKLLLAAEK 48
+I L+ + A+IN+ N +P L A +
Sbjct: 52 IEIAKALIDRGADINLQNSISDSP------------YLYAGAQ 82
Score = 30.5 bits (70), Expect = 0.81
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 6 KDIVCLLVSK-NANINIVNGEGRTP 29
D V LL+ +I+ N G T
Sbjct: 119 IDNVKLLLEDGREDIDFQNDFGYTA 143
Score = 30.1 bits (69), Expect = 1.1
Identities = 4/25 (16%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 6 KDIVCLLVSKNA-NINIVNGEGRTP 29
+I+ ++ ++N N G
Sbjct: 85 TEILAYMLKHATPDLNKHNRYGGNA 109
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 35.4 bits (82), Expect = 0.019
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 9/47 (19%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP---------RDVCKHNDEARKLL 43
I L++K A+I EG T D+ + + L
Sbjct: 55 YKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFL 101
Score = 32.3 bits (74), Expect = 0.16
Identities = 5/36 (13%), Positives = 11/36 (30%), Gaps = 2/36 (5%)
Query: 11 LLVSKNANINIVNGEGRTPRD--VCKHNDEARKLLL 44
+ + I + G T + A K++
Sbjct: 139 IFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMME 174
Score = 30.8 bits (70), Expect = 0.56
Identities = 3/25 (12%), Positives = 10/25 (40%)
Query: 5 EKDIVCLLVSKNANINIVNGEGRTP 29
++ + + K A+I + +
Sbjct: 93 TTELCKIFLEKGADITALYKPYKIV 117
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 35.5 bits (83), Expect = 0.019
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+V LV A+ ++ N TP
Sbjct: 196 LPLVRTLVRSGADSSLKNCHNDTP 219
Score = 34.7 bits (81), Expect = 0.041
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+V LLV+ A+ ++ G+T
Sbjct: 59 PSVVRLLVTAGASPMALDRHGQTA 82
Score = 34.4 bits (80), Expect = 0.052
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+V LL+ AN+N G +
Sbjct: 163 LSMVQLLLQHGANVNAQMYSGSSA 186
Score = 32.4 bits (75), Expect = 0.22
Identities = 9/25 (36%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 6 KDIVCLLVSKNANINIVNGE-GRTP 29
++ V LL+ + A+I+ V+ + GR+P
Sbjct: 129 QETVQLLLERGADIDAVDIKSGRSP 153
Score = 29.0 bits (66), Expect = 2.4
Identities = 5/28 (17%), Positives = 10/28 (35%), Gaps = 4/28 (14%)
Query: 6 KDIVCLLVSKNA----NINIVNGEGRTP 29
+ L+ A ++ N +G T
Sbjct: 92 PTCLRALLDSAAPGTLDLEARNYDGLTA 119
Score = 27.8 bits (63), Expect = 6.0
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 4/28 (14%)
Query: 6 KDIVCLLVS----KNANINIVNGEGRTP 29
V LV+ ++I N +TP
Sbjct: 22 LPAVHRLVNLFQQGGRELDIYNNLRQTP 49
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 35.2 bits (82), Expect = 0.021
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 12/43 (27%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDVCKHNDEARKLLLAAEK 48
++V LV A+I + + G T L LA E
Sbjct: 123 PEVVEALVELGADIEVEDERGLTA------------LELAREI 153
Score = 30.2 bits (69), Expect = 0.79
Identities = 6/25 (24%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 6 KDIVCLLVSKNANINIVNGE-GRTP 29
V LL A+++ + G T
Sbjct: 89 DKCVRLLAEAGADLDHRDMRGGLTA 113
Score = 29.0 bits (66), Expect = 2.3
Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP--RDVCKHNDEARKLLLAA 46
+ + L+ ++ +++ V+ GRT +D+ +LL A
Sbjct: 57 EQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA 98
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A
{Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D*
4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P
2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 35.0 bits (82), Expect = 0.021
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+IV +L+ A++N V+ G TP
Sbjct: 60 LEIVEVLLKNGADVNAVDHAGMTP 83
Score = 34.6 bits (81), Expect = 0.023
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+IV +L+ A++N + EG TP
Sbjct: 93 LEIVEVLLKNGADVNANDMEGHTP 116
Score = 33.9 bits (79), Expect = 0.042
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+IV +L+ A++N + G+T
Sbjct: 126 LEIVEVLLKNGADVNAQDKFGKTA 149
Score = 33.5 bits (78), Expect = 0.054
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
D V +L++ A++N + G TP
Sbjct: 27 DDEVRILMANGADVNAEDASGWTP 50
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 35.9 bits (84), Expect = 0.021
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
++ L +SK A++N + G T
Sbjct: 85 VKLLKLFLSKGADVNECDFYGFTA 108
Score = 35.5 bits (83), Expect = 0.021
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+DIV LL+ A+ + G TP
Sbjct: 52 EDIVELLLRHGADPVLRKKNGATP 75
Score = 35.1 bits (82), Expect = 0.035
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 4 TEKDIVCLLVSKNANINIVNGEGRTP 29
+ I LL+ A++N+ G+TP
Sbjct: 197 DVEAITHLLLDHGADVNVRGERGKTP 222
Score = 32.1 bits (74), Expect = 0.36
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 6 KDIV-CLLVSKNANINIVNGEGRTPRD--VCKHNDEARKLLL 44
+V LL ++ IN + +G+T V + +LL
Sbjct: 232 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC 273
Score = 30.5 bits (70), Expect = 0.84
Identities = 5/25 (20%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 6 KDIVCLLVSKN-ANINIVNGEGRTP 29
+++ +L+ + A++N + GR
Sbjct: 161 VEVLKILLDEMGADVNACDNMGRNA 185
Score = 30.5 bits (70), Expect = 1.1
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDVCKHNDEARKLLLAAEK 48
+ L + AN+N+ + K A L+ AAEK
Sbjct: 118 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATA--LMDAAEK 158
Score = 28.6 bits (65), Expect = 3.8
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 6 KDIVCLLVSKNANINIVNGE-GRTP 29
D+V L+ AN+N E G TP
Sbjct: 18 VDLVQQLLEGGANVNFQEEEGGWTP 42
Score = 27.8 bits (63), Expect = 6.8
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 6 KDIVCLLVSKNANINIVN 23
K I LL + A+ + +
Sbjct: 266 KKIAELLCKRGASTDCGD 283
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 33.5 bits (78), Expect = 0.022
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
++V LL+ A++N + GRTP
Sbjct: 15 LEVVKLLLEAGADVNAKDKNGRTP 38
Score = 33.5 bits (78), Expect = 0.022
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
++V LL+ A++N + GRTP
Sbjct: 48 LEVVKLLLEAGADVNAKDKNGRTP 71
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 34.7 bits (81), Expect = 0.022
Identities = 5/24 (20%), Positives = 14/24 (58%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+++V LL+ A+++ + +T
Sbjct: 113 QEVVELLIKYGADVHTQSKFCKTA 136
Score = 33.5 bits (78), Expect = 0.051
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+L+ + + RTP
Sbjct: 47 FSTTEVLLRAGVSRDARTKVDRTP 70
Score = 33.1 bits (77), Expect = 0.073
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+IV +L+ A++N + T
Sbjct: 80 ANIVEVLLKHGADVNAKDMLKMTA 103
Score = 28.5 bits (65), Expect = 2.5
Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
D V +L++ A + G +P
Sbjct: 15 DDEVRILMANGAPFT-TDWLGTSP 37
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END
capping, inhibition, prote binding, actin capping,
actin-binding, cytoskeleton, ANK RE; 2.20A {Homo
sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Length = 123
Score = 33.9 bits (79), Expect = 0.025
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+I+ L+ K A+IN + TP
Sbjct: 53 LEILEFLLLKGADINAPDKHHITP 76
Score = 33.9 bits (79), Expect = 0.029
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
V LL+SK A+ + +G T
Sbjct: 86 VSCVKLLLSKGADKTVKGPDGLTA 109
Score = 33.5 bits (78), Expect = 0.032
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
D V V+K ++N GR P
Sbjct: 20 LDEVKDYVAKGEDVNRTLEGGRKP 43
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 34.4 bits (80), Expect = 0.027
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 12/43 (27%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDVCKHNDEARKLLLAAEK 48
D + +L A +++ + GR P + LA E
Sbjct: 91 LDTLVVLHRAGARLDVRDAWGRLP------------VDLAEEL 121
Score = 33.6 bits (78), Expect = 0.057
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+ V L+ AN N N GR P
Sbjct: 25 VEEVRALLEAGANPNAPNSYGRRP 48
Score = 29.8 bits (68), Expect = 0.93
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 6 KDIVCLLVSKNANINIVNGEGRT 28
+ LL+ A N + T
Sbjct: 57 ARVAELLLLHGAEPNCADPATLT 79
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV;
NMR {Escherichia coli}
Length = 115
Score = 33.5 bits (78), Expect = 0.028
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+ V L+SK A++N + +G TP
Sbjct: 22 AEEVKKLLSKGADVNARSKDGNTP 45
Score = 33.1 bits (77), Expect = 0.046
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+IV LL +K A++N +
Sbjct: 88 HEIVKLLDAKGADVNARSWGSSHH 111
Score = 33.1 bits (77), Expect = 0.048
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+IV LL++K A++N + +G TP
Sbjct: 55 AEIVKLLLAKGADVNARSKDGNTP 78
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 33.9 bits (79), Expect = 0.029
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+IV +L+ A++N V+ G TP
Sbjct: 60 LEIVEVLLKNGADVNAVDAIGFTP 83
Score = 33.9 bits (79), Expect = 0.031
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+I +L+ A++N + G+T
Sbjct: 93 LEIAEVLLKHGADVNAQDKFGKTA 116
Score = 32.7 bits (76), Expect = 0.067
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
D V +L++ A++N + G TP
Sbjct: 27 DDEVRILMANGADVNAKDEYGLTP 50
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 35.4 bits (81), Expect = 0.030
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 7 DIVCLLVSKNANINIVNGEGRTPRDVCK---HNDEARKLLLAAE 47
+ + LL+ A+I I N G TP D+ K H L A
Sbjct: 219 ECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS 262
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta
barrel, alternative splicing, hypusine, protein
biosynthesis; 2.30A {Arabidopsis thaliana}
Length = 167
Score = 34.3 bits (78), Expect = 0.037
Identities = 33/167 (19%), Positives = 62/167 (37%), Gaps = 24/167 (14%)
Query: 192 MTFHKYHRMEDIHGYLD----YLAQTYPQLVTLTDIGRS--LEGRPLRLVKISSGVP--- 242
M H +H M D + + ++TYPQ G ++ RP ++V++S+
Sbjct: 1 MGHHHHHHMSDDEHHFEASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKH 60
Query: 243 -NAKAFWIDGGIH---AREWITPATVSFILSELVENREAQEDYIKKIDFYVLPITNPDGY 298
+AK ++ I E I P++ + + V + Q I + F L G
Sbjct: 61 GHAKCHFVAIDIFTAKKLEDIVPSSHNCDVP-HVNRVDYQLIDITEDGFVSL--LTDSGG 117
Query: 299 EYT----HTTERLWRKNRRKSPKGDSCSGIDLVTYDSDEEDEKTIDL 341
T + L + R +G +V+ S +E+ +
Sbjct: 118 TKDDLKLPTDDGLTAQMRLGFDEGKDI----VVSVMSSMGEEQICAV 160
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 34.8 bits (81), Expect = 0.041
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
IV +L+ + + + +G T
Sbjct: 75 TKIVKILLFSGLDDSQFDDKGNTA 98
Score = 34.8 bits (81), Expect = 0.042
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
D++ LL+ + N N P
Sbjct: 174 VDMMILLLDYMTSTNTNNSLLFIP 197
Score = 31.7 bits (73), Expect = 0.36
Identities = 2/24 (8%), Positives = 8/24 (33%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+I +++ K+ +
Sbjct: 234 AEIAKMIIEKHVEYKSDSYTKDLD 257
Score = 31.3 bits (72), Expect = 0.53
Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+VC L++ A N++ P
Sbjct: 44 VRLVCTLLNAGALKNLLE--NEFP 65
Score = 30.6 bits (70), Expect = 0.98
Identities = 7/25 (28%), Positives = 9/25 (36%), Gaps = 1/25 (4%)
Query: 6 KDIVCLLVSKNANINIVNGEG-RTP 29
V L V KN + G +T
Sbjct: 108 MQTVKLFVKKNWRLMFYGKTGWKTS 132
Score = 29.8 bits (68), Expect = 1.7
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDVCKHNDEARKLLL 44
+++ L + NI N E V + E K+++
Sbjct: 208 IEMLQALFKYDINIYSANLEN-----VLLDDAEIAKMII 241
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 34.5 bits (80), Expect = 0.045
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
++IV LL+ A+I + G T
Sbjct: 134 EEIVRLLIEHGADIRAQDSLGNTV 157
Score = 30.3 bits (69), Expect = 1.0
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+ + LL + ++ G T
Sbjct: 17 QALSKLLKFEGCEVHQRGAMGETA 40
Score = 27.6 bits (62), Expect = 7.2
Identities = 6/44 (13%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDVCKHNDEARK-LLLAAEK 48
++V L+++ A+++ L AA
Sbjct: 88 VNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACV 131
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 34.5 bits (79), Expect = 0.050
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+IV L+ +N + G +P
Sbjct: 53 TEIVEFLLQLGVPVNDKDDAGWSP 76
Score = 34.1 bits (78), Expect = 0.067
Identities = 2/24 (8%), Positives = 10/24 (41%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
++ +++ + + + RT
Sbjct: 20 DELKERILADKSLATRTDQDSRTA 43
Score = 30.6 bits (69), Expect = 0.85
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 3 HTEKDIVCLLVSKNANINIVNGEGRTPRDVCKHNDEARKLLL 44
+ LV++ A+I I N E +TP V K L
Sbjct: 182 EERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRL 223
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 33.9 bits (79), Expect = 0.053
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
++ L+ AN+N N EG TP
Sbjct: 114 SEMSYFLLEHGANVNDRNLEGETP 137
Score = 33.5 bits (78), Expect = 0.076
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+IV L+ A+I+ + G T
Sbjct: 147 SEIVKKLLELGADISARDLTGLTA 170
Score = 33.1 bits (77), Expect = 0.11
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
++ + LV + + EG T
Sbjct: 48 ENAIDKLVENFDKLEDKDIEGSTA 71
Score = 32.7 bits (76), Expect = 0.13
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
I L+SK +N+N + G+TP
Sbjct: 81 LGIAEKLLSKGSNVNTKDFSGKTP 104
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 34.4 bits (78), Expect = 0.066
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 7 DIVCLLVSKNANINIVNGEGRTPRDV---CKHNDEARKLLLAAEKTE 50
+ CL + + A++ + EGR P + + D L LA +
Sbjct: 282 GLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREA 328
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 32.9 bits (75), Expect = 0.21
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 2/74 (2%)
Query: 8 IVCLLVSKNANINIVNGEGRTPRDVC--KHNDEARKLLLAAEKTEGIQREHKFLNAARAN 65
+V ++ +++ +G T + + KLLL G E A
Sbjct: 189 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 248
Query: 66 DLESLNSLAVIEKG 79
++E+
Sbjct: 249 KKHHKECEELLEQA 262
Score = 30.6 bits (69), Expect = 0.98
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDVCK--HNDEARKLLLAAEKTEGIQREH 56
D + LL+ A + VN G T D+ + H+ E +LL A+ H
Sbjct: 220 PDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLH 272
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 32.2 bits (73), Expect = 0.28
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 12/42 (28%)
Query: 7 DIVCLLVSKNANINIVNGEGRTPRDVCKHNDEARKLLLAAEK 48
D +CLL++ + + ++ E LAAE
Sbjct: 109 DTLCLLLTSDEIVKVIQAENYQA------------FRLAAEN 138
>3pzg_A Mannan endo-1,4-beta-mannosidase. glycosyl hydrol 5; alpha/beta
barrel, glycosyl hydrolase, sugar binding, secret
hydrolase; 1.40A {Thermotoga petrophila} PDB: 3pz9_A
3pzi_A* 3pzm_A 3pzn_A* 3pzo_A* 3pzq_A*
Length = 383
Score = 32.2 bits (72), Expect = 0.31
Identities = 17/142 (11%), Positives = 36/142 (25%), Gaps = 1/142 (0%)
Query: 274 NREAQEDYIKKIDFYVLPITNPDGYEYTHTTERLWRKNRRKSPKGDSCSGIDLVTYDSDE 333
+ +E+Y K + F + + G Y + + ++ + + E
Sbjct: 148 DERIKEEYKKYVSFLINHVNVYTGVPYREEPT-IMAWELANELRCETDKSGNTLVEWVKE 206
Query: 334 EDEKTIDLNRNWGFHWGGVGSSKEQCQQIYAGTGPFSEPETQAVSRFILANNANMKAFVT 393
L+ N G G G + + + F T
Sbjct: 207 MSSYIKSLDPNHLVAVGDEGFFSNYEGFKPYGGEAEWAYNGWSGVDWKKLLSIETVDFGT 266
Query: 394 FHSYGQYILYPWGYNKKVPPDY 415
FH Y + + +
Sbjct: 267 FHLYPSHWGVSPENYAQWGAKW 288
>3at7_A Alginate-binding flagellin; two UP-and-DOWN four-helical bundles,
ALGI structural protein; 2.10A {Sphingomonas}
Length = 283
Score = 31.5 bits (71), Expect = 0.49
Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 10/134 (7%)
Query: 115 AAFNLYFSDVVEKWGGSTSNIDIMVKADKVAAVKQYLEKAKLTYEVILEDVQRAINEENP 174
+ + +Y S+ ++ T VKA VA K+ +++YE I E + ++ +
Sbjct: 36 SDYKIYVSENLQTLVRDTREFTNAVKAGDVAKAKKLFASTRMSYERI-EPIAELFSDLDA 94
Query: 175 EISEEELAVLTGRKGHRMTFHKYHRME-------DIHGYLDYLAQTYPQLVTLTDIGRSL 227
I K F +HR+E G + ++ L R L
Sbjct: 95 SIDSRADDHEKAEKD--PAFFGFHRIEYGLFAQNSAKGLAPVADKLMADVLELQKRIRGL 152
Query: 228 EGRPLRLVKISSGV 241
P ++V ++ +
Sbjct: 153 TFPPEKVVGGAAVL 166
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 31.3 bits (71), Expect = 0.51
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTP 29
+ L I N +G TP
Sbjct: 201 LQMGARLCPTVQLEEISNHQGLTP 224
Score = 30.1 bits (68), Expect = 1.4
Identities = 12/85 (14%), Positives = 20/85 (23%), Gaps = 17/85 (20%)
Query: 6 KDIVCLLVSK---NANINIVNGEGRTPRDVCKHNDEARKLLLAAEKTEGIQREHKFLNAA 62
D+V L+ A++ + G T L + +
Sbjct: 149 WDVVTYLLENPHQPASLEATDSLGNTV------------LHALVMIADNSPENSALVIHM 196
Query: 63 RANDLESLNSLAVIEKGVLEFFKNK 87
L+ L LE N
Sbjct: 197 YDGLLQMGARL--CPTVQLEEISNH 219
Score = 27.4 bits (61), Expect = 9.0
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 6 KDIVCLLVSKNANINIVNGEGRTPRDVCKHNDEARK-LLLAAEK 48
V LLV A++++ + L LAA
Sbjct: 103 LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACT 146
>3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase;
cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A
{Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A*
3qhm_A* 3qhn_A*
Length = 458
Score = 30.6 bits (68), Expect = 1.0
Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 9/88 (10%)
Query: 336 EKTIDLNRNWGF-------HWGGVGSSKEQCQQIYAGTGPFSEPET-QAVSRFI-LANNA 386
E + ++ GF V + Y+ ++ Q + + I A +
Sbjct: 87 EDMLLQIKSLGFNAIRLPFCTESVKPGTQPIGIDYSKNPDLRGLDSLQIMEKIIKKAGDL 146
Query: 387 NMKAFVTFHSYGQYILYPWGYNKKVPPD 414
+ + +H G + P Y + +
Sbjct: 147 GIFVLLDYHRIGCTHIEPLWYTEDFSEE 174
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 29.7 bits (67), Expect = 1.7
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 13/66 (19%)
Query: 6 KDIVCLLVSKNANINIVNGE----GRTP------RDVCKHNDEARKLLLAAEKTEGIQRE 55
+ ++ L++ + G+T ND LL AEKT ++
Sbjct: 22 EGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR-- 79
Query: 56 HKFLNA 61
+F+N+
Sbjct: 80 -EFINS 84
Score = 28.2 bits (63), Expect = 5.3
Identities = 6/27 (22%), Positives = 9/27 (33%), Gaps = 3/27 (11%)
Query: 6 KDIVCLLVSK---NANINIVNGEGRTP 29
IV L A++ + G T
Sbjct: 153 PHIVHYLTENGHKQADLRRQDSRGNTV 179
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 30.2 bits (68), Expect = 1.8
Identities = 19/126 (15%), Positives = 31/126 (24%), Gaps = 33/126 (26%)
Query: 322 SGIDLVTYDSDEEDEKTIDLNR---NWGFHWGGVGSSKEQCQQIYAGTGPFSEPETQAVS 378
SGI E K + ++ G GGV + + + + P
Sbjct: 1027 SGITD-----PYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFKD-EPVQNDI----- 1075
Query: 379 RFILANNANMKAFVTFHSYGQYILYPWGYNKKV----------PPDYADLDRVGRAAAEA 428
+ M A+V G K + G+ A
Sbjct: 1076 -LQESFINTMSAWVNMLLISSS-----GPIKTPVGACATSVESVDIGVETILSGK--ARI 1127
Query: 429 MRVAGG 434
+ GG
Sbjct: 1128 C-IVGG 1132
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure
initiativ midwest center for structural genomics,
rossmann fold; 1.10A {Methanosarcina mazei}
Length = 103
Score = 28.1 bits (63), Expect = 2.0
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
Query: 146 AVKQYLEKAKLTYEVILEDVQRAINEENPEISEEELAVLTGRKG 189
K+ L + ++ + V R +E E EE+
Sbjct: 37 KTKKLLTDLGVDFDYV--YVDRLEGKEEEEA-VEEVRRFNPSVS 77
>1yw4_A Succinylglutamate desuccinylase; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.00A
{Chromobacterium violaceum} SCOP: c.56.5.7
Length = 341
Score = 29.2 bits (65), Expect = 2.5
Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 21/108 (19%)
Query: 340 DLNRNWGFHWGGVGSSKEQ--CQQIYAGTGPFSEPETQAVSRFILANNANMKAFVTFHS- 396
D+NR + E ++ F + H+
Sbjct: 104 DMNRLFNGAHARHPELPESVRAAELETLAAEFFAGARAR--KLHYD----------LHTA 151
Query: 397 -----YGQYILYPWGYNKKVPPDYADLDRVGRAAAEAMRVAGGGAYTF 439
+ ++ +YP+ ++ + L + R EA+ + A TF
Sbjct: 152 IRGSVFEKFAIYPFLHDGR-THKREQLAWLQRCGIEAVLLHTQPANTF 198
>2hnh_A DNA polymerase III alpha subunit; DNA replication,
nucleotidyltransferase, beta, PHP, transferase; HET:
DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Length = 910
Score = 28.6 bits (65), Expect = 4.5
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 7/31 (22%)
Query: 329 YDSDEEDEKTID-------LNRNWGFHWGGV 352
Y++DEE + ID + RN G H GGV
Sbjct: 485 YEADEEVKALIDMARKLEGVTRNAGKHAGGV 515
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 28.2 bits (63), Expect = 4.7
Identities = 15/85 (17%), Positives = 24/85 (28%), Gaps = 17/85 (20%)
Query: 6 KDIVCLLVSK---NANINIVNGEGRTPRDVCKHNDEARKLLLAAEKTEGIQREHKFLNAA 62
IV L+ A+I+ + G T L E + KF+ +
Sbjct: 161 LAIVKFLLQNSWQPADISARDSVGNTV------------LHALVEVADNTVDNTKFVTSM 208
Query: 63 RANDLESLNSLAVIEKGVLEFFKNK 87
L + LE N+
Sbjct: 209 YNEILI--LGAKLHPTLKLEEITNR 231
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 5.0
Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 36/92 (39%)
Query: 254 HAREWITPATVSFILSELVENREAQEDYIKKIDFYVLPITNPDGYEYTHTTERLWRKNRR 313
R+W RE Q ++++D + E+ WR+ +
Sbjct: 86 SIRKW----------------REEQRKRLQELD------------AASKVMEQEWREKAK 117
Query: 314 KSPKGDSCSGIDLVTYDSDEEDEKTIDLNRNW 345
K ++ E+ EK NR
Sbjct: 118 KD--------LEEWNQRQSEQVEKNKINNRIA 141
>3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein ST
initiative, NEW YORK SGX research center for structural
GEN nysgxrc; 1.76A {Lactobacillus acidophilus}
Length = 338
Score = 28.3 bits (64), Expect = 5.1
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 367 GPFSEPETQAVSRFILANNANMKAFVTFHSYG 398
+ + + + L N+A M V +YG
Sbjct: 8 VKYERKDNKDLCEITLENDAGMAVKVL--NYG 37
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like
nucleotidyltransferase fold, transferase; HET: DNA;
3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Length = 1220
Score = 28.8 bits (65), Expect = 5.2
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 7/31 (22%)
Query: 329 YDSDEEDEKTID-------LNRNWGFHWGGV 352
+ DE + I+ LNR+ H GV
Sbjct: 549 MEKDERIRQVIEVAMRLEGLNRHASVHAAGV 579
>3fxh_A Integron gene cassette protein HFX_CASS2; integron cassette
protein, mobIle metagenome, structural genomics, PSI-2;
1.84A {Uncultured bacterium}
Length = 135
Score = 27.4 bits (60), Expect = 6.4
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 189 GHRMTFHKYHRMEDIHGYLDYLAQTYPQLVTLTDIGRSLEGRPLRLVKISSGVPNA 244
GH MT ++H + + ++ +LA+ Y + L + S PL SS + NA
Sbjct: 45 GHSMTRDQFHELSEQERFIAFLAEKYSSTIKLYYLADS---SPLFEKDTSSFIENA 97
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 27.9 bits (63), Expect = 6.7
Identities = 16/77 (20%), Positives = 20/77 (25%), Gaps = 31/77 (40%)
Query: 375 QAVSRF----ILANNANMKAFVTFHSYGQYILYPWGYNKKVPPDYADLDRV--------- 421
V+ F L NA + + D DRV
Sbjct: 96 ACVAAFGGVDKLVANAGVVHLASLIDT----------------TVEDFDRVIAINLRGAW 139
Query: 422 --GRAAAEAMRVAGGGA 436
+ AA M GGGA
Sbjct: 140 LCTKHAAPRMIERGGGA 156
>2qpx_A Predicted metal-dependent hydrolase of the TIM-BA; YP_805737.1,
putative metal-dependent hydrolase; HET: KCX MSE; 1.40A
{Lactobacillus casei}
Length = 376
Score = 27.7 bits (61), Expect = 9.0
Identities = 3/41 (7%), Positives = 9/41 (21%)
Query: 347 FHWGGVGSSKEQCQQIYAGTGPFSEPETQAVSRFILANNAN 387
+ K+ + + +A I +
Sbjct: 325 MYGLAARQFKQALVAHFNQLPFVDLAQKKAWINAICWQTSA 365
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.397
Gapped
Lambda K H
0.267 0.0505 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,072,249
Number of extensions: 445008
Number of successful extensions: 1576
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1480
Number of HSP's successfully gapped: 301
Length of query: 444
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 347
Effective length of database: 3,993,456
Effective search space: 1385729232
Effective search space used: 1385729232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.0 bits)