BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15738
(187 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 95 IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE-------YSYS 147
+PP + G SVTL C ADG P P ++WT+ + E +S
Sbjct: 193 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDD 252
Query: 148 GNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK 187
+ LT+R+ +++ Y+C+A N G ASI L V K
Sbjct: 253 SSELTIRNVDKNDEAEYVCIAENKAGEQ-DASIHLKVFAK 291
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 150 SLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK 187
+LT+ + N AGIY CV G+ + A++ + + K
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQK 100
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 95 IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTR------KNNNLPGGEYSYSG 148
+PP + SVTL C ADG P P +TWT+ + +N ++Y G
Sbjct: 10 VPPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDG 69
Query: 149 NSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK 187
+ L ++ ++ Y+C+A N G A+I L V K
Sbjct: 70 SELIIKKVDKSDEAEYICIAENKAGEQ-DATIHLKVFAK 107
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 97 PRIIYVSGAGKVE-VKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRH 155
P +Y G + V +G + LEC A G P P+I W +K +LP + + + +R
Sbjct: 220 PSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRI 279
Query: 156 TN--RHSAGIYLCVANNMVGS 174
TN +G Y C+A+N +GS
Sbjct: 280 TNVSEEDSGEYFCLASNKMGS 300
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 10/98 (10%)
Query: 96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNN-----NLPGGEYSYSGNS 150
PP I S + V ++ +EC+A GNP P+ WTR + P +
Sbjct: 16 PPTITKQSAKDHI-VDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGT 74
Query: 151 LTV--RHTNRHS--AGIYLCVANNMVGSSAAASIALHV 184
L + R R G Y C A N G++ + I L V
Sbjct: 75 LVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQV 112
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 113 GYSVTLECKADGNPVPNITWTRKNNNL----PGGEYSYSGNSLTVRHTNRHSAGIYLCVA 168
G L C+A+GNP P + W L P +G+++ R T S +Y C
Sbjct: 327 GEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNT 386
Query: 169 NNMVG 173
+N G
Sbjct: 387 SNEHG 391
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 100 IYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--NLPGGEYSYSGNSLTVRHTN 157
+ G G ++ G++V + CKA GNP PNI W + ++ YS L + ++
Sbjct: 114 VITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSR 173
Query: 158 RHSAGIYLCVANNMVGSSAAASIALHVLCK 187
G Y CVA N +G+ + + L+V +
Sbjct: 174 EEDQGKYECVAENSMGTEHSKATNLYVKVR 203
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 12/98 (12%)
Query: 96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYS-----GNS 150
PP II V V G + C A G+P P+I W + + G + Y+ G
Sbjct: 8 PPEIIRKPQNQGVRV--GGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 65
Query: 151 LTVR----HTNRHSAGIYLCVANNMVGSSAAASIALHV 184
+R R A Y CVA N VG + +A L +
Sbjct: 66 SILRIEPVRAGRDDA-PYECVAENGVGDAVSADATLTI 102
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 100 IYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNN--NLPGGEYSYSGNSLTVRHTN 157
+ G G ++ G++V + CKA GNP PNI W + ++ YS L + ++
Sbjct: 112 VITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSR 171
Query: 158 RHSAGIYLCVANNMVGSSAAASIALHVLCK 187
G Y CVA N +G+ + + L+V +
Sbjct: 172 EEDQGKYECVAENSMGTEHSKATNLYVKVR 201
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 12/98 (12%)
Query: 96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYS-----GNS 150
PP II V V G + C A G+P P+I W + + G + Y+ G
Sbjct: 6 PPEIIRKPQNQGVRV--GGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 63
Query: 151 LTVR----HTNRHSAGIYLCVANNMVGSSAAASIALHV 184
+R R A Y CVA N VG + +A L +
Sbjct: 64 SILRIEPVRAGRDDA-PYECVAENGVGDAVSADATLTI 100
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 113 GYSVTLECKADGNPVPNITWTRKNNNLPG-GEYSYSGNSLTVRHTNRHSAGIYLCVANNM 171
G +VTLEC A GNPVP+I W + +P E S SG L + + GIY C A N+
Sbjct: 128 GQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENI 187
Query: 172 VGSS 175
G
Sbjct: 188 RGKD 191
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 49.7 bits (117), Expect = 9e-07, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 95 IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY---SYSGN-- 149
+PPR ++ +G +ECKADG P P +TW + + P GEY S N
Sbjct: 713 VPPR--WILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTP-GEYKDLKKSDNIR 769
Query: 150 ----SLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184
+L V + + + G YLC A N +GS +A I + V
Sbjct: 770 VEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISV 808
Score = 44.7 bits (104), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 101 YVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLP--GGEYSYSGNSLTVRHTNR 158
Y+ K + G ++ + C G P+ +I W R N LP + + +L + + R
Sbjct: 529 YIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVER 588
Query: 159 HS-AGIYLCVANNMVGSSAAASIALHVL 185
+S Y CVA N G SA S+ + V+
Sbjct: 589 NSDQATYTCVAKNQEGYSARGSLEVQVM 616
Score = 39.3 bits (90), Expect = 0.001, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Query: 107 KVEVKKGYSVTLECKADGNPVPNITWTRKN----NNLPGGEYSYSGNSLTV------RHT 156
+++ +ECKA GNP+P I W R + ++PG S L +
Sbjct: 48 RIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYR 107
Query: 157 NRHSAGIYLCVANNMVGS 174
A +Y C+A N GS
Sbjct: 108 QEVHAQVYACLARNQFGS 125
Score = 38.5 bits (88), Expect = 0.002, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Query: 110 VKKGYSVTLECKADGNPVPNITW------TRKNNNLPGGEY-SYSGNS---LTVRHTNRH 159
++ G SV L+C A GNP P I+W N+ G+Y + +G+ L + + +
Sbjct: 441 MEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHAN 500
Query: 160 SAGIYLCVANNMVG 173
G+Y C+A + VG
Sbjct: 501 DGGLYKCIAKSKVG 514
Score = 37.7 bits (86), Expect = 0.004, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 97 PRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITW-------TRKNNNLPGGEYSYSGN 149
P+++ ++ ++ L C A G PVP W TRK +
Sbjct: 247 PKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSG 306
Query: 150 SLTVRHTNRHSAGIYLCVANNMVGSSAAASI 180
+L ++ +G YLCV NN VG + ++
Sbjct: 307 TLIIKDAVVEDSGKYLCVVNNSVGGESVETV 337
Score = 32.7 bits (73), Expect = 0.12, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 113 GYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLC-VANNM 171
G C+ GNP+ ++W + G +S + L + + G+Y C V N+
Sbjct: 358 GRPAVFTCQYTGNPIKTVSWMKD-----GKAIGHSESVLRIESVKKEDKGMYQCFVRNDR 412
Query: 172 VGSSAAASIAL 182
+ A+A + L
Sbjct: 413 ESAEASAELKL 423
Score = 31.6 bits (70), Expect = 0.28, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 97 PRII-YVSGAGKVEVKKGYSVTLECKADGNPVP-NITWT------RKNNNLPGGEYSYSG 148
PRII + G +V G +TL C G +P NI WT ++ + G
Sbjct: 619 PRIIPFAFEEGPAQV--GQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRG 676
Query: 149 NSLTVRHTNRHSAGIYLCVANNMVG 173
+ LT+ AG + C A N+ G
Sbjct: 677 SVLTIEAVEASHAGNFTCHARNLAG 701
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 22/105 (20%)
Query: 96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITW--------TRKNNN------LPG 141
PPRI V + V KG TL CKA+G P P I W T K++ LP
Sbjct: 9 PPRI--VEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66
Query: 142 GEYSYSGNSLTVRH--TNRHSAGIYLCVANNMVGSSAAASIALHV 184
G + L + H +R G+Y+CVA N +G + + +L V
Sbjct: 67 GSLFF----LRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 98 RIIYVSGAGKVEVKKGYSVTLECKAD-GNPVPNITWTRKNNNLPGGEYSYS--GNSLTVR 154
R + V V G +EC+ G+P P I+W + + L + + G L +
Sbjct: 111 RDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMIT 170
Query: 155 HTNRHSAGIYLCVANNMVGSSAAASIALHVL 185
+T + AG Y+CV NMVG + L VL
Sbjct: 171 YTRKSDAGKYVCVGTNMVGERESEVAELTVL 201
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 22/105 (20%)
Query: 96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITW--------TRKNNN------LPG 141
PPRI V + V KG TL CKA+G P P I W T K++ LP
Sbjct: 9 PPRI--VEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66
Query: 142 GEYSYSGNSLTVRH--TNRHSAGIYLCVANNMVGSSAAASIALHV 184
G + L + H +R G+Y+CVA N +G + + +L V
Sbjct: 67 GSLFF----LRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 48.1 bits (113), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNL---PGGEYSYSGN--S 150
PP ++ VE G +TL+CK DG P I W +++ L P + + N S
Sbjct: 5 PP--YFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVAS 62
Query: 151 LTVRHTNRHSAGIYLCVANNMVGSSAAASI 180
L + + G Y C A N VG+ A++++
Sbjct: 63 LVINKVDHSDVGEYTCKAENSVGAVASSAV 92
Score = 43.1 bits (100), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNL-PGGEYSYS----GNSLTVRHTNRHSAG 162
V++ G S T +C G ITW + N + PGG Y + +LTV + AG
Sbjct: 207 VDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAG 266
Query: 163 IYLCVANNMVGSSAAAS 179
Y C A+N+ G + ++
Sbjct: 267 QYTCYASNVAGKDSCSA 283
Score = 39.3 bits (90), Expect = 0.001, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYS--YSGNSLTV 153
PP ++ VE KG V LEC+ G P ++W + L G+ S N LT
Sbjct: 384 PP--VFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTS 441
Query: 154 RHT-NRHSAGI--YLCVANNMVGS-SAAASIAL 182
H N SA I Y C A+N VGS + SI L
Sbjct: 442 IHILNVDSADIGEYQCKASNDVGSDTCVGSITL 474
Score = 32.3 bits (72), Expect = 0.18, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 113 GYSVTLECKADGNPVPNITWTR-----KNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCV 167
G+ V EC+ +G+ ++W + K++ + ++ +L + T++ G Y C
Sbjct: 116 GFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCS 175
Query: 168 ANNMVGSSAAAS 179
A+N +G++++++
Sbjct: 176 ASNPLGTASSSA 187
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 105 AGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYS-----YSGNSLTVRHTNRH 159
A +V V +G++V C+ADG+P P I W +L + + + +L VR+
Sbjct: 392 AQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQ 451
Query: 160 SAGIYLCVANNMVGSSAAASIALHV 184
G YLC+A N G+ + + LHV
Sbjct: 452 DNGTYLCIAANAGGNDSMPA-HLHV 475
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%)
Query: 110 VKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVAN 169
VK+G VT+ CK G P PN+ W+ L GG + + + L ++ G Y C A
Sbjct: 321 VKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRAT 380
Query: 170 NMVGSS 175
N G
Sbjct: 381 NEHGDK 386
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 95 IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE---YSYSGNSL 151
+PP I + ++G +T C+A G+P P I+W R + E S L
Sbjct: 95 VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTEL 154
Query: 152 TVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK 187
TVR+ G Y+C A N G + L V +
Sbjct: 155 TVRNIINSDGGPYVCRATNKAGEDEKQAF-LQVFVQ 189
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 100 IYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNN--LPGGEYSYSGNSLTVRHTN 157
I V V +KG +V LEC A GNPVP I W R + S L + +
Sbjct: 206 IEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQ 265
Query: 158 RHSAGIYLCVANNMVGSSAA 177
+ AG Y CVA N G + A
Sbjct: 266 QEDAGSYECVAENSRGKNVA 285
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 115 SVTLECKADGNPVPNITWTRKNNNLPGG---EYSYSGNSLTVRHTNR-HSAGIYLCVANN 170
V L C+ GNP P+I W ++ G YS SL + + N+ AG Y C+A N
Sbjct: 24 KVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATN 83
Query: 171 MVGSSAAASIALH 183
G+ + L
Sbjct: 84 SFGTIVSREAKLQ 96
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 115 SVTLECKADGNPVPNITWTRKNNN-LPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVG 173
SV ECKA+G P P W + + L +L + N AG+Y CVA N G
Sbjct: 311 SVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHG 370
Query: 174 ---SSAAASI 180
SSA S+
Sbjct: 371 VIFSSAELSV 380
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 95 IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE---YSYSGNSL 151
+PP I + ++G +T C+A G+P P I+W R + E S L
Sbjct: 191 VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTEL 250
Query: 152 TVRHTNRHSAGIYLCVANNMVGSS 175
TVR+ G Y+C A N G
Sbjct: 251 TVRNIINSDGGPYVCRATNKAGED 274
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 17/92 (18%)
Query: 107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNS-----------LTVRH 155
KVE+ G S C A G P +I W P GE S LT+ +
Sbjct: 13 KVELSVGESKFFTCTAIGEP-ESIDWYN-----PQGEKIISTQRVVVQKEGVRSRLTIYN 66
Query: 156 TNRHSAGIYLCVANNMVGSSAAASIALHVLCK 187
N AGIY C A + G + A++ L + K
Sbjct: 67 ANIEDAGIYRCQATDAKGQTQEATVVLEIYQK 98
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 100 IYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNN--LPGGEYSYSGNSLTVRHTN 157
I V V +KG +V LEC A GNPVP I W R + S L + +
Sbjct: 207 IEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQ 266
Query: 158 RHSAGIYLCVANNMVGSSAA 177
+ AG Y CVA N G + A
Sbjct: 267 QEDAGSYECVAENSRGKNVA 286
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 115 SVTLECKADGNPVPNITWTRKNNNLPGG---EYSYSGNSLTVRHTNR-HSAGIYLCVANN 170
V L C+ GNP P+I W ++ G YS SL + + N+ AG Y C+A N
Sbjct: 25 KVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATN 84
Query: 171 MVGSSAAASIALH 183
G+ + L
Sbjct: 85 SFGTIVSREAKLQ 97
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 115 SVTLECKADGNPVPNITWTRKNNN-LPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVG 173
SV ECKA+G P P W + + L +L + N AG+Y CVA N G
Sbjct: 312 SVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHG 371
Query: 174 ---SSAAASI 180
SSA S+
Sbjct: 372 VIFSSAELSV 381
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 113 GYSVTLECKADGNPVPNITWTRKNNNL--PGGEYSYSGN-SLTVRHTNRHSAGIYLCVAN 169
G S+ + C A GNP P I W + N L G GN +LT+R + G+Y C A
Sbjct: 25 GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQAC 84
Query: 170 NMVG 173
+++G
Sbjct: 85 SVLG 88
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 44.3 bits (103), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 113 GYSVTLECKADGNPVPNITWTRKNNNL--PGGEYSYSGN-SLTVRHTNRHSAGIYLCVAN 169
G S+ + C A GNP P I W + N L G GN +LT+R + G+Y C A
Sbjct: 681 GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQAC 740
Query: 170 NMVGSS 175
+++G +
Sbjct: 741 SVLGCA 746
Score = 29.6 bits (65), Expect = 1.0, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
Query: 97 PRIIYVSGAGK-VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRH 155
P + + SG VE G V + K G P P I W + L +G+ LT+
Sbjct: 328 PFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIME 387
Query: 156 TNRHSAGIYLCVANNMVGSSAAASI 180
+ G Y + N + + +
Sbjct: 388 VSERDTGNYTVILTNPISKEKQSHV 412
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNL-PGGEYSYSGN----SLTVRHTNRHSAG 162
V K G + L C+ G P+P+I W R L +Y S + +LTV + G
Sbjct: 17 VTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEG 76
Query: 163 IYLCVANNMVGSSAAASIAL 182
+Y C+A N VG +S L
Sbjct: 77 VYTCIATNEVGEVETSSKLL 96
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 110 VKKGYSVTLECKADGNPVPNITW--------TRKNNNLPGGEYSYSGNSLTVRHTNRHSA 161
V++ + T+ C A GNP P ITW T NN S S +L + +
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQ 179
Query: 162 GIYLCVANNMVGSSAAASIALHV 184
G Y CVA N G+ +A L+V
Sbjct: 180 GKYECVATNSAGTRYSAPANLYV 202
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 120 CKADGNPVPNITWTRKNNNLPGGEYSY------SGNSLTVR--HTNRHSAGIYLCVANNM 171
C+A G+P P I W +K + + SG+ L ++ T R A IY CVA+N
Sbjct: 28 CQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEA-IYECVASNN 86
Query: 172 VGSSAAASIALHVL 185
VG + S L VL
Sbjct: 87 VG-EISVSTRLTVL 99
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY--SYSGNSLTVRHTNRHSAGIYL 165
V++ +G L C GNP P+++W + ++ L SL + + + AG Y
Sbjct: 110 VKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYR 169
Query: 166 CVANNMVGSSAAASIALHV 184
CVA N +G++ + + L V
Sbjct: 170 CVAKNSLGTAYSKLVKLEV 188
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 117 TLECKADGNPVPNITWTRKNNNLPGGEYSYS----GNSLTVRHTNRHSAGIYLCVANNMV 172
T C + P P I+WTR + + YS G LT+ GIY C ANN V
Sbjct: 26 TFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGV 85
Query: 173 GSSAAASIALHVLCK 187
G + + AL V K
Sbjct: 86 GGAVESCGALQVKMK 100
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 110 VKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSG-------NSLTVRHTNRHSAG 162
V+KG + T+ C A GNP P I+W + + LP + +G +L + + G
Sbjct: 121 VEKGRTATMLCAAGGNPDPEISWFK--DFLPVDPAASNGRIKQLRSGALQIESSEESDQG 178
Query: 163 IYLCVANNMVGSSAAASIALHV 184
Y CVA N G+ +A L+V
Sbjct: 179 KYECVATNSAGTRYSAPANLYV 200
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 120 CKADGNPVPNITWTRKNNNLPGGEYSY------SGNSLTVR--HTNRHSAGIYLCVANNM 171
C+A G P P ITW +K + + +G+ L ++ R A IY C A N
Sbjct: 29 CQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEA-IYECTATNS 87
Query: 172 VGS 174
+G
Sbjct: 88 LGE 90
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 97 PRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY-----SYSGNSL 151
PRII + VKK TL CK +G P P I W + + E + +L
Sbjct: 10 PRII--EHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67
Query: 152 ----TVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184
T++ G Y CVA N VG + + +L +
Sbjct: 68 FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 110 VKKGYSVTLEC-KADGNPVPNITWTRKN---NNLPGGEYSYS-------GNSLTVRHTNR 158
V KG + LEC G P P + W + ++L + S G +L + +
Sbjct: 120 VAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEP 179
Query: 159 HSAGIYLCVANNMVGSSAAASIALHVLCK 187
G Y C+A N+VG+ ++ L V K
Sbjct: 180 IDEGNYKCIAQNLVGTRESSYAKLIVQVK 208
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 97 PRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY-----SYSGNSL 151
PRII + VKK TL CK +G P P I W + + E + +L
Sbjct: 10 PRII--EHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67
Query: 152 ----TVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184
T++ G Y CVA N VG + + +L +
Sbjct: 68 FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 110 VKKGYSVTLEC-KADGNPVPNITWTRKN---NNLPGGEYSYS-------GNSLTVRHTNR 158
V KG + LEC G P P + W + ++L + S G +L + +
Sbjct: 120 VAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEP 179
Query: 159 HSAGIYLCVANNMVGSSAAASIALHVLCK 187
G Y C+A N+VG+ ++ L V K
Sbjct: 180 IDEGNYKCIAQNLVGTRESSYAKLIVQVK 208
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 113 GYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMV 172
G VTLEC A GNPVP I W RK + ++ S L +++ + G Y C A N+
Sbjct: 222 GQMVTLECFAFGNPVPQIKW-RKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIK 280
Query: 173 G 173
G
Sbjct: 281 G 281
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPG-GEYSYSGNSLTVRHTNRHSAGIYLC 166
E G + C A G P P + W R L SG L +G+Y C
Sbjct: 304 TEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQC 363
Query: 167 VANNMVGSSAAAS 179
VA N G+ A++
Sbjct: 364 VAENKHGTVYASA 376
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 116 VTLECKADGNPVPNITWTRKNNNL---PGGEYSYSGNSLTVRHTNR-HSAGIYLCVANNM 171
VTL C+A NP W L P Y L + + + AG Y CVA N
Sbjct: 25 VTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNA 84
Query: 172 VGSSAAASIALH 183
G+ + +L
Sbjct: 85 RGTVVSREASLR 96
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 113 GYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMV 172
G VTLEC A GNPVP I W + + +L +++ + +L + + G Y C A N
Sbjct: 221 GQQVTLECFAFGNPVPRIKWRKVDGSL-SPQWTTAEPTLQIPSVSFEDEGTYECEAENSK 279
Query: 173 G 173
G
Sbjct: 280 G 280
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 115 SVTLECKADGNPVPNITWTRKNNNL---PGGEYSYSGNSLTVRH-TNRHSAGIYLCVANN 170
V L C+A +P W + PG + G +L + + T AG+Y C+A+N
Sbjct: 23 QVLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLVIMNPTKAQDAGVYQCLASN 82
Query: 171 MVGS 174
VG+
Sbjct: 83 PVGT 86
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 16/86 (18%)
Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLP--------GGEYSYSGNSLTVRHTNRH 159
E G ++ C A G P P + W R L G+ +S SL
Sbjct: 303 TEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVLAGDLRFSKLSL-------E 355
Query: 160 SAGIYLCVANNMVGS-SAAASIALHV 184
+G+Y CVA N G+ A+A +A+
Sbjct: 356 DSGMYQCVAENKHGTIYASAELAVQA 381
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 110 VKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE---YSYSGNSLTVRHTNRHSAGIYLC 166
++G +T C+A G+P P I+W R + E S LTVR+ G Y+C
Sbjct: 16 AERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVC 75
Query: 167 VANNMVGSSAAAS 179
A N G +
Sbjct: 76 RATNKAGEDEKQA 88
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 15/91 (16%)
Query: 95 IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNN--LPGGEYSYSG---- 148
+ P II + E + VTL C A+G P+P ITW R + G+ S G
Sbjct: 94 VQPHIIQLKNETTYENGQ---VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEV 150
Query: 149 ------NSLTVRHTNRHSAGIYLCVANNMVG 173
+SL ++ +G Y C A + +G
Sbjct: 151 KGQHGSSSLHIKDVKLSDSGRYDCEAASRIG 181
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 110 VKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGN-------SLTVRHTNRHSAG 162
V+K + T+ C A GNP P I+W + + LP + +G +L + + G
Sbjct: 120 VEKARTATMLCAAGGNPDPEISWFK--DFLPVDPATSNGRIKQLRSGALQIESSEESDQG 177
Query: 163 IYLCVANNMVGSSAAASIALHVLCK 187
Y CVA N G+ +A L+V +
Sbjct: 178 KYECVATNSAGTRYSAPANLYVRVR 202
Score = 33.1 bits (74), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 120 CKADGNPVPNITWTRKNNNLPGGEYSY------SGNSLTVR--HTNRHSAGIYLCVANNM 171
C+A G P P ITW +K + + +G+ L ++ R A IY C A N
Sbjct: 28 CQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEA-IYECTATNS 86
Query: 172 VGS 174
+G
Sbjct: 87 LGE 89
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 14/89 (15%)
Query: 98 RIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTN 157
R ++ G + V++G ++CK G P P+++W + S + + VR
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPV----RPDSAHKMLVRENG 64
Query: 158 RHS----------AGIYLCVANNMVGSSA 176
HS AGIY C+A N G ++
Sbjct: 65 VHSLIIEPVTSRDAGIYTCIATNRAGQNS 93
>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 98
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 97 PRIIYVSGAGKVEVKKGYSVTLECKADG-NPVPNITWTR-KNNNLPGGEYSYSGNSLTVR 154
P ++ V V+ G VT C A +P + WTR N LP ++G LT+R
Sbjct: 9 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNG-ILTIR 67
Query: 155 HTNRHSAGIYLCVANNMVGSSAAASIALHV 184
+ AG Y+C +NM + LHV
Sbjct: 68 NVQPSDAGTYVCTGSNMFAMDQGTA-TLHV 96
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNL-PGGEYSYS----GNSLTVRHTNRHSAG 162
V++ G S T +C G ITW + N + PGG Y + +LTV + AG
Sbjct: 15 VDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAG 74
Query: 163 IYLCVANNMVGSSAAAS 179
Y C A+N+ G + ++
Sbjct: 75 QYTCYASNVAGKDSCSA 91
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYS--YSGNSLTVRHT-NRHSA--G 162
VE KG V LEC+ G P ++W + L G+ S N LT H N SA G
Sbjct: 202 VETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIG 261
Query: 163 IYLCVANNMVGS-SAAASIAL 182
Y C A+N VGS + SI L
Sbjct: 262 EYQCKASNDVGSYTCVGSITL 282
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNL-PGGEYSYS----GNSLTVRHTNRHSAG 162
V++ G S T +C G ITW + N + PGG Y + +LTV + AG
Sbjct: 15 VDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAG 74
Query: 163 IYLCVANNMVGSSAAAS 179
Y C A+N+ G + ++
Sbjct: 75 QYTCYASNVAGKDSCSA 91
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYS--YSGNSLTVRHT-NRHSA--G 162
VE KG V LEC+ G P ++W + L G+ S N LT H N SA G
Sbjct: 202 VETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIG 261
Query: 163 IYLCVANNMVGS-SAAASIAL 182
Y C A+N VGS + SI L
Sbjct: 262 EYQCKASNDVGSYTCVGSITL 282
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITW-----TRKNNNLPGGEYSYSG-N 149
PPR I V + + +G ++ K G P P+++W T ++++L S G +
Sbjct: 5 PPRFIQVPE--NMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLH 62
Query: 150 SLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK 187
SL AG Y CVA N G A ++ L VL K
Sbjct: 63 SLIFEVVRASDAGAYACVAKNRAG-EATFTVQLDVLAK 99
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Query: 107 KVEVKKGYSVTLECKADGNPVPNITWTRKN----NNLPGGEYSYSGNSLTV------RHT 156
+++ +ECKA GNP+P I W R + ++PG S L +
Sbjct: 19 RIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYR 78
Query: 157 NRHSAGIYLCVANNMVGS 174
A +Y C+A N GS
Sbjct: 79 QEVHAQVYACLARNQFGS 96
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 108 VEVKKGYSVTLECKADGNPVPNITW-------TRKNNNLPGGEYSYSGNSLTVRHTNRHS 160
+E+ ++++L C A G P P+ W TRK + +L ++
Sbjct: 228 LELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVED 287
Query: 161 AGIYLCVANNMVGSSAAASI 180
+G YLCV NN VG + ++
Sbjct: 288 SGKYLCVVNNSVGGESVETV 307
Score = 33.5 bits (75), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 113 GYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLC-VANNM 171
G C+ GNP+ ++W + G +S + L + + G+Y C V N+
Sbjct: 328 GRPAVFTCQYTGNPIKTVSWMKD-----GKAIGHSESVLRIESVKKEDKGMYQCFVRNDR 382
Query: 172 VGSSAAASIAL 182
+ A+A + L
Sbjct: 383 ESAEASAELKL 393
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Query: 107 KVEVKKGYSVTLECKADGNPVPNITWTRKN----NNLPGGEYSYSGNSLTV------RHT 156
+++ +ECKA GNP+P I W R + ++PG S L +
Sbjct: 13 RIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYR 72
Query: 157 NRHSAGIYLCVANNMVGS 174
A +Y C+A N GS
Sbjct: 73 QEVHAQVYACLARNQFGS 90
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 108 VEVKKGYSVTLECKADGNPVPNITW-------TRKNNNLPGGEYSYSGNSLTVRHTNRHS 160
+E+ ++++L C A G P P+ W TRK + +L ++
Sbjct: 222 LELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVED 281
Query: 161 AGIYLCVANNMVGSSAAASI 180
+G YLCV NN VG + ++
Sbjct: 282 SGKYLCVVNNSVGGESVETV 301
Score = 33.5 bits (75), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 113 GYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLC-VANNM 171
G C+ GNP+ ++W + G +S + L + + G+Y C V N+
Sbjct: 322 GRPAVFTCQYTGNPIKTVSWMKD-----GKAIGHSESVLRIESVKKEDKGMYQCFVRNDR 376
Query: 172 VGSSAAASIAL 182
+ A+A + L
Sbjct: 377 ESAEASAELKL 387
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 97 PRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYS---YSGNSLTV 153
P II A + G ++ L+CKA G+P+P I+W ++ PG + +L +
Sbjct: 8 PPIILQGPANQTLAVDGTAL-LKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQI 66
Query: 154 RHTNRHSAGIYLCVANNMVGSSAAASI 180
++ G Y CVA + G ++ +++
Sbjct: 67 KNLRISDTGTYTCVATSSSGETSWSAV 93
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Query: 107 KVEVKKGYSVTLECKADGNPVPNITWTRKN----NNLPGGEYSYSGNSLTV------RHT 156
+++ +ECKA GNP+P I W R + ++PG S L +
Sbjct: 13 RIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYR 72
Query: 157 NRHSAGIYLCVANNMVGS 174
A +Y C+A N GS
Sbjct: 73 QEVHAQVYACLARNQFGS 90
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 108 VEVKKGYSVTLECKADGNPVPNITW-------TRKNNNLPGGEYSYSGNSLTVRHTNRHS 160
++V+ S +L C A P P+ W TRK + +L ++
Sbjct: 225 IDVELASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVED 284
Query: 161 AGIYLCVANNMVGSSAAASI 180
+G YLCV NN VG + ++
Sbjct: 285 SGKYLCVVNNSVGGESVETV 304
Score = 33.5 bits (75), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 113 GYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLC-VANNM 171
G C+ GNP+ ++W + G +S + L + + G+Y C V N+
Sbjct: 325 GRPAVFTCQYTGNPIKTVSWMKD-----GKAIGHSESVLRIESVKKEDKGMYQCFVRNDR 379
Query: 172 VGSSAAASIAL 182
+ A+A + L
Sbjct: 380 ESAEASAELKL 390
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 95 IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNL-PGGEYSYSGNS--- 150
I + + V+G V KA G P P WT+ + GG+Y S +
Sbjct: 3 ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGF 62
Query: 151 -LTVRHTNRHSAGIYLCVANNMVGS 174
L + T+ +G+Y C N GS
Sbjct: 63 FLEIHKTDTSDSGLYTCTVKNSAGS 87
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 115 SVTLECKADGNPVPNITWTRKNNNLPGGEYSY--SGNSLTVRHTNRHSAGIYLCVANNMV 172
+ EC G PVP + W + + + +Y G++L + + G Y CVA N
Sbjct: 329 DIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEA 388
Query: 173 GSSAAAS 179
G++ +++
Sbjct: 389 GNAQSSA 395
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 113 GYSVTLECKADGNPVPNITWTRKNNNL---PGGE--YSYSGNSLTVRHTNRHSAGIYLCV 167
G +V L+C+ G+P+P I W + +L PG +L + +G+Y C
Sbjct: 136 GDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCS 195
Query: 168 ANNMVGSSAAASIALHVL 185
A N + + +L
Sbjct: 196 ARNPASTRTGNEAEVRIL 213
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 112 KGYSVTLECKADGNPVPNITWTRKNN--NLPGGEYS-YSGNSLTVRHTNRHSAGIYLCVA 168
+G LEC G P P+ TW R L +YS G++L + + +G Y CV
Sbjct: 235 EGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVV 294
Query: 169 ---NNMVGSSAAASI 180
N + +SA ++
Sbjct: 295 TYKNENISASAELTV 309
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 110 VKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGN-------SLTVRHTNRHSAG 162
V++ + T+ C A GNP P ITW + + LP + +G +L + + G
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFK--DFLPVDPSASNGRIKQLRSGALQIESSEETDQG 177
Query: 163 IYLCVANNMVGSSAAASIALHVLCK 187
Y CVA N G ++ L+V +
Sbjct: 178 KYECVATNSAGVRYSSPANLYVRVR 202
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Query: 96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSY------SGN 149
PPR I ++ V G + + C+A G+P P +TW +K + + +G
Sbjct: 6 PPRFIK-EPKDQIGVSGGVA-SFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGA 63
Query: 150 SLTVR--HTNRHSAGIYLCVANNMVGS 174
L ++ T R +Y CVA N VG
Sbjct: 64 VLRIQPLRTPRDE-NVYECVAQNSVGE 89
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 110 VKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGN-------SLTVRHTNRHSAG 162
V++ + T+ C A GNP P ITW + + LP + +G +L + + G
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFK--DFLPVDPSASNGRIKQLRSGALQIESSEETDQG 177
Query: 163 IYLCVANNMVGSSAAASIALHVLCK 187
Y CVA N G ++ L+V +
Sbjct: 178 KYECVATNSAGVRYSSPANLYVRVR 202
Score = 33.9 bits (76), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Query: 96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSY------SGN 149
PPR I ++ V G + + C+A G+P P +TW +K + + +G
Sbjct: 6 PPRFIK-EPKDQIGVSGGVA-SFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGA 63
Query: 150 SLTVR--HTNRHSAGIYLCVANNMVGS 174
L ++ T R +Y CVA N VG
Sbjct: 64 VLRIQPLRTPRDE-NVYECVAQNSVGE 89
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 110 VKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGN-------SLTVRHTNRHSAG 162
V++ + T+ C A GNP P ITW + + LP + +G +L + + G
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFK--DFLPVDPSASNGRIKQLRSGALQIESSEETDQG 177
Query: 163 IYLCVANNMVGSSAAASIALHV 184
Y CVA N G ++ L+V
Sbjct: 178 KYECVATNSAGVRYSSPANLYV 199
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Query: 96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSY------SGN 149
PPR I ++ V G + + C+A G+P P +TW +K + + +G
Sbjct: 6 PPRFIK-EPKDQIGVSGGVA-SFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGA 63
Query: 150 SLTVR--HTNRHSAGIYLCVANNMVGS 174
L ++ T R +Y CVA N VG
Sbjct: 64 VLRIQPLRTPRDE-NVYECVAQNSVGE 89
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 109 EVKKGYSVTLECKADGNPVPNITWTRKNNNL-PGGEYSYSGNSLTVRHTNRHSAGIYLCV 167
E+ G +V + C A G+P+P + W + +L P + N L + T+ + Y CV
Sbjct: 216 EIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLEL--TDVKDSANYTCV 273
Query: 168 ANNMVGS-SAAASIALHVLCK 187
A + +G A A I + L K
Sbjct: 274 AMSSLGVIEAVAQITVKSLPK 294
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 95 IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWT---RKNNNLPGGEYSYSG--- 148
IPP+I + + + +G +T+ C G P P +TW+ RK ++ G +
Sbjct: 6 IPPKIEAL--PSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDD 63
Query: 149 -NSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184
+L + + G+Y N GS +A++ +H+
Sbjct: 64 LTTLIIMDVQKQDGGLYTLSLGNEFGSD-SATVNIHI 99
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 95 IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWT---RKNNNLPGGEYSYSG--- 148
IPP+I + + + +G +T+ C G P P +TW+ RK ++ G +
Sbjct: 4 IPPKIEAL--PSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDD 61
Query: 149 -NSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHV 184
+L + + G+Y N GS +A++ +H+
Sbjct: 62 LTTLIIMDVQKQDGGLYTLSLGNEFGSD-SATVNIHI 97
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-----EYSYSGN-SLTVRHTNRHSA 161
+EV +G + +CK +G P P + W + +N + +Y GN SLT+
Sbjct: 51 MEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDD 110
Query: 162 GIYLCVANNMVGSSAAASIAL 182
Y C A N +G + + L
Sbjct: 111 AKYTCKAVNSLGEATCTAELL 131
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 110 VKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGN-------SLTVRHTNRHSAG 162
V++ + T+ C A GNP P ITW + + LP + +G L + + G
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFK--DFLPVDPSTSNGRIKQLRSGGLQIESSEETDQG 177
Query: 163 IYLCVANNMVGSSAAASIALHV 184
Y CVA+N G ++ L+V
Sbjct: 178 KYECVASNSAGVRYSSPANLYV 199
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 120 CKADGNPVPNITWTRKNNNLPGGEYSY------SGNSLTVR--HTNRHSAGIYLCVANNM 171
C+A G+P P +TW +K + + +G L ++ T R IY CVA N
Sbjct: 28 CQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDE-NIYECVAQNP 86
Query: 172 VGS 174
G
Sbjct: 87 HGE 89
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNN-----NLPGGEYSYSGN--SLTVRHTNRHS 160
V V +G + T E G PVP ++W R LPG + S+S LT+ + +
Sbjct: 15 VVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKAN 74
Query: 161 AGIYLCVANNMVGSSAAASIALHVLCK 187
+G Y A N GS A S A +L K
Sbjct: 75 SGRYSLKATN--GSGQATSTA-ELLVK 98
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNN-----NLPGGEYSYSGN--SLTVRHTNRHS 160
V V +G + T E G PVP ++W R LPG + S+S LT+ + +
Sbjct: 15 VVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKAN 74
Query: 161 AGIYLCVANNMVGSSAAASIALHVLCK 187
+G Y A N GS A S A +L K
Sbjct: 75 SGRYSLKATN--GSGQATSTA-ELLVK 98
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-----EYSYSGN-SLTVRHTNRHSA 161
++V +G + +CK +G P P + W + +N + +Y GN SLT+
Sbjct: 51 MDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDD 110
Query: 162 GIYLCVANNMVGSSAAASIAL 182
Y C A N +G + + L
Sbjct: 111 AKYTCKAVNSLGEATCTAELL 131
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 115 SVTLECKADGNPVPNITWTRKNN--NLPGGEYSYSG----------NSLTVRHTNRHSAG 162
VTL C A+G P+P ITW R + G+ S G +SL ++ +G
Sbjct: 17 QVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSG 76
Query: 163 IYLCVANNMVG 173
Y C A + +G
Sbjct: 77 RYDCEAASRIG 87
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 112 KGYSVTLECKADGNPVPNITWTRKNNNLPGGE----YSYSGNS---LTVRHTNRHSAGIY 164
+G + + C NP +I W R LP +YS L + T+ + G Y
Sbjct: 114 EGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRY 173
Query: 165 LCVANNMVGS 174
C A N +G+
Sbjct: 174 NCTATNHIGT 183
>pdb|3SKU|E Chain E, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|D Chain D, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|F Chain F, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
Length = 319
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 115 SVTLECKADGNP-VPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVG 173
V L CKAD NP WT N +LP G + + N AG Y+C A N +G
Sbjct: 234 DVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIG 293
Query: 174 SSAA 177
+ +
Sbjct: 294 TRSG 297
>pdb|3U82|B Chain B, Binding Of Herpes Simplex Virus Glycoprotein D To Nectin-1
Exploits Host Cell Adhesion
Length = 317
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 115 SVTLECKADGNP-VPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVG 173
V L CKAD NP WT N +LP G + + N AG Y+C A N +G
Sbjct: 235 DVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIG 294
Query: 174 SSAA 177
+ +
Sbjct: 295 TRSG 298
>pdb|4FMF|A Chain A, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|B Chain B, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|C Chain C, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|D Chain D, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
Length = 313
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 115 SVTLECKADGNP-VPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVG 173
V L CKAD NP WT N +LP G + + N AG Y+C A N +G
Sbjct: 234 DVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIG 293
Query: 174 SSAA 177
+ +
Sbjct: 294 TRSG 297
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 115 SVTLECKADGNPVPNITWTRKNN--NLPGGEYSYSG----------NSLTVRHTNRHSAG 162
VTL C A+G P+P ITW R + G+ S G +SL ++ +G
Sbjct: 17 QVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSG 76
Query: 163 IYLCVANNMVG 173
Y C A + +G
Sbjct: 77 RYDCEAASRIG 87
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 112 KGYSVTLECKADGNPVPNITWTRKNNNLPGGE----YSYSGNS---LTVRHTNRHSAGIY 164
+G + + C NP +I W R LP +YS L + T+ + G Y
Sbjct: 114 EGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRY 173
Query: 165 LCVANNMVGS 174
C A N +G+
Sbjct: 174 NCTATNHIGT 183
>pdb|3ALP|A Chain A, Cell Adhesion Protein
pdb|3ALP|B Chain B, Cell Adhesion Protein
pdb|3U83|A Chain A, Crystal Structure Of Nectin-1
Length = 331
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 115 SVTLECKADGNP-VPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANNMVG 173
V L CKAD NP WT N +LP G + + N AG Y+C A N +G
Sbjct: 249 DVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIG 308
Query: 174 SSAA 177
+ +
Sbjct: 309 TRSG 312
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 110 VKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSA-----GIY 164
V +G L+C G PVP ITW + +Y+ S V + A G Y
Sbjct: 23 VIEGQDFVLQCSVRGTPVPRITWLLNGQPI---QYARSTCEAGVAELHIQDALPEDHGTY 79
Query: 165 LCVANNMVGS-SAAASIALH 183
C+A N +G S +A + +H
Sbjct: 80 TCLAENALGQVSCSAWVTVH 99
>pdb|4FOM|A Chain A, Crystal Structure Of Human Nectin-3 Full Ectodomain
(D1-D3)
Length = 308
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 111 KKGYSVTLECKADGNPVP-NITWTRKNNNLPGGEYSYSGNSLTVRHT-NRHSAGIYLCVA 168
+KG V L+C AD NP P W+R + P G + S N+L H + +G+Y+C
Sbjct: 227 RKG--VNLKCNADANPPPFKSVWSRLDGQWPDGLLA-SDNTLHFVHPLTFNYSGVYICKV 283
Query: 169 NNMVGSSAAASI 180
N +G + +
Sbjct: 284 TNSLGQRSDQKV 295
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 17/92 (18%)
Query: 107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNS-----------LTVRH 155
KVE+ G S C A G P +I W P GE S LT+ +
Sbjct: 11 KVELSVGESKFFTCTAIGEP-ESIDWYN-----PQGEKIISTQRVVVQKEGVRSRLTIYN 64
Query: 156 TNRHSAGIYLCVANNMVGSSAAASIALHVLCK 187
N AGIY C A + G + A++ L + K
Sbjct: 65 ANIEDAGIYRCQATDAKGQTQEATVVLEIYQK 96
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 110 VKKGYSVTLECKADGNPVPNITWTRKNNNL 139
V +G S C DG PVP +TW RK L
Sbjct: 26 VYEGESARFSCDTDGEPVPTVTWLRKGQVL 55
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 110 VKKGYSVTLECKADGNPVPNITWTRKNNNL 139
V +G S C DG PVP +TW RK L
Sbjct: 20 VYEGESARFSCDTDGEPVPTVTWLRKGQVL 49
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 17/89 (19%)
Query: 107 KVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNS-----------LTVRH 155
KVE+ G S C A G P +I W P GE S LT+ +
Sbjct: 9 KVELSVGESKFFTCTAIGEP-ESIDWYN-----PQGEKIISTQRVVVQKEGVRSRLTIYN 62
Query: 156 TNRHSAGIYLCVANNMVGSSAAASIALHV 184
N AGIY C A + G + A++ L +
Sbjct: 63 ANIEDAGIYRCQATDAKGQTQEATVVLEI 91
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 34.3 bits (77), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 113 GYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANN 170
G V L C+A G+P W + N +P G S L + AG Y+C NN
Sbjct: 33 GQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTS----ELIFNAVHVKDAGFYVCRVNN 86
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 113 GYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSL-TVRHTNRHSAGIYLCVANNM 171
G ++ L+C A G+P+P+ W + N LP ++ L V + + G Y C N
Sbjct: 133 GSTLVLQCVAVGSPIPHYQWFK--NELP---LTHETKKLYMVPYVDLEHQGTYWCHVYND 187
Query: 172 VGSSAAASIAL 182
S + + +
Sbjct: 188 RDSQDSKKVEI 198
>pdb|2L7J|A Chain A, Solution Structure Of The Third Immunoglobulin-Like Domain
Of Nectin-1
Length = 95
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 115 SVTLECKADGN-PVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHS-AGIYLCVANNMV 172
V L CKAD N P WT N +LP G +L R +S AG Y+C A N +
Sbjct: 24 DVKLTCKADANPPATEYHWTTLNGSLPKG-VEAQNRTLFFRGPITYSLAGTYICEATNPI 82
Query: 173 GSSAA 177
G+ +
Sbjct: 83 GTRSG 87
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 33.9 bits (76), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 12/69 (17%)
Query: 115 SVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTN---------RHSAGIYL 165
+V C A GNP P+I+W KN GE+ G + +RH G Y
Sbjct: 32 TVRFRCPAAGNPTPSISWL-KNGREFRGEHRIGG--IKLRHQQWSLVMESVVPSDRGNYT 88
Query: 166 CVANNMVGS 174
CV N GS
Sbjct: 89 CVVENKFGS 97
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 33.5 bits (75), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 12/69 (17%)
Query: 115 SVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTN---------RHSAGIYL 165
+V C A GNP P+I+W KN GE+ G + +RH G Y
Sbjct: 140 TVRFRCPAAGNPTPSISWL-KNGREFRGEHRIGG--IKLRHQQWSLVMESVVPSDRGNYT 196
Query: 166 CVANNMVGS 174
CV N GS
Sbjct: 197 CVVENKFGS 205
>pdb|2O26|X Chain X, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|Y Chain Y, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|U Chain U, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|W Chain W, Structure Of A Class Iii Rtk Signaling Assembly
Length = 290
Score = 33.1 bits (74), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 125 NPVPNITWTRKNNNLPGGEYSYS-GNSLTVRHTNRHSAGIYLCVANNMVGSSAAASIALH 183
NP P K+N+ G+++Y +LT+ +G+++C ANN G SA + L
Sbjct: 227 NPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFG-SANVTTTLK 285
Query: 184 VLCK 187
V+ K
Sbjct: 286 VVEK 289
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 33.1 bits (74), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 97 PRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYS---YSGN---- 149
P IY + KV +G SV LEC+ P P + W R N + Y N
Sbjct: 16 PMFIYKPQSKKV--LEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV 73
Query: 150 SLTVRHTNRHSAGIYLCVANNMVG 173
+L ++ N+ AG Y A N G
Sbjct: 74 TLLIKDVNKKDAGWYTVSAVNEAG 97
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 33.1 bits (74), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 110 VKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNS------LTVRHTNRHSAGI 163
V++G V + + G P P ++W R + + ++ + L + R AG
Sbjct: 17 VREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGF 76
Query: 164 YLCVANNMVGS 174
Y C A N G+
Sbjct: 77 YTCKAVNEYGA 87
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 107 KVEVKKGYSVTLECKADGNPVPNITWTRKN---NNL-----PGGEYSYSGNSLTVRHTNR 158
K+ V +G V L C +G P+I W + NL P E + G L+++ R
Sbjct: 11 KLTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG-FLSLKSVER 69
Query: 159 HSAGIYLCVANN 170
AG Y C +
Sbjct: 70 SDAGRYWCQVED 81
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 11/67 (16%)
Query: 131 TWTRKN---------NNLPGGEYSYSGN-SLTVRHTNRHSAGIYLCVANNMVGSSAAASI 180
TW R+N N+ G+++Y +LT+ + +G+++C ANN G SA +
Sbjct: 220 TWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFG-SANVTT 278
Query: 181 ALHVLCK 187
L V+ K
Sbjct: 279 TLEVVDK 285
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 11/67 (16%)
Query: 131 TWTRKN---------NNLPGGEYSYSGN-SLTVRHTNRHSAGIYLCVANNMVGSSAAASI 180
TW R+N N+ G+++Y +LT+ + +G+++C ANN G SA +
Sbjct: 245 TWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFG-SANVTT 303
Query: 181 ALHVLCK 187
L V+ K
Sbjct: 304 TLEVVDK 310
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 115 SVTLECKADGNPVPNITWTRKNNNLPGG-------EYSYSGNSLTVRHTNRHSAGIYLCV 167
+ TL CK G+P P + W R+ + E+ + L + A +Y
Sbjct: 19 NATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR 78
Query: 168 ANNMVGS-SAAASIALHVLCK 187
A N GS S AS+ + V K
Sbjct: 79 ATNQGGSVSGTASLEVEVPAK 99
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 102 VSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLP-GGEY----SYSGNSLTVRH- 155
+ G G V +G V+++ G P P ITW + + + G Y + S SL +
Sbjct: 106 LEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNG 165
Query: 156 TNRHSAGIYLCVANNMVG 173
R AG Y+ A N G
Sbjct: 166 VERKDAGFYVVCAKNRFG 183
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 115 SVTLECKADGNPVPNITWTRKNNNLPGG-------EYSYSGNSLTVRHTNRHSAGIYLCV 167
+ TL CK G+P P + W R+ + E+ + L + A +Y
Sbjct: 21 NATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR 80
Query: 168 ANNMVGS-SAAASIALHVLCK 187
A N GS S AS+ + V K
Sbjct: 81 ATNQGGSVSGTASLEVEVPAK 101
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 102 VSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLP-GGEY----SYSGNSLTVRH- 155
+ G G V +G V+++ G P P ITW + + + G Y + S SL +
Sbjct: 108 LEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNG 167
Query: 156 TNRHSAGIYLCVANNMVG 173
R AG Y+ A N G
Sbjct: 168 VERKDAGFYVVCAKNRFG 185
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 118 LECKADGNPVPNITWTRKNNNLPGGEYS----YSGNSLTVRHTNRHSAGIYLCVANNMVG 173
L C A G+PVP I W RK+ L + S L +R+ G Y C+A+ G
Sbjct: 28 LSCVATGSPVPTILW-RKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSG 86
Query: 174 SS 175
+
Sbjct: 87 EA 88
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 115 SVTLECKADGNPVPNITWTRKNNNLPGG-------EYSYSGNSLTVRHTNRHSAGIYLCV 167
+ TL CK G+P P + W R+ + E+ + L + A +Y
Sbjct: 21 NATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR 80
Query: 168 ANNMVGS-SAAASIALHVLCK 187
A N GS S AS+ + V K
Sbjct: 81 ATNQGGSVSGTASLEVEVPAK 101
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 102 VSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLP-GGEY----SYSGNSLTVRH- 155
+ G G V +G V+++ G P P ITW + + + G Y + S SL +
Sbjct: 108 LEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNG 167
Query: 156 TNRHSAGIYLCVANNMVG 173
R AG Y+ A N G
Sbjct: 168 VERKDAGFYVVCAKNRFG 185
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE---YSYSG--NSLTVRHTNRHSAG 162
V V G L+C G P P + W + L E + G + L + AG
Sbjct: 24 VRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAG 83
Query: 163 IYLCVANN 170
+Y+C A N
Sbjct: 84 VYVCRARN 91
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE---YSYSG--NSLTVRHTNRHSAG 162
V V G L+C G P P + W + L E + G + L + AG
Sbjct: 23 VRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAG 82
Query: 163 IYLCVANN 170
+Y+C A N
Sbjct: 83 VYVCRARN 90
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 30.4 bits (67), Expect = 0.66, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 111 KKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANN 170
+ G +++L C A NP +W L G L + + ++G+Y C ANN
Sbjct: 394 RPGVNLSLSCHAASNPPAQYSW------LIDGNIQQHTQELFISNITEKNSGLYTCQANN 447
Query: 171 MVGSSAAASI 180
+ ++
Sbjct: 448 SASGHSRTTV 457
Score = 27.3 bits (59), Expect = 4.6, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 111 KKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCVANN 170
+ G ++ L C A NP +W G + S L + + +++G Y C A+N
Sbjct: 216 RSGENLNLSCHAASNPPAQYSW------FVNGTFQQSTQELFIPNITVNNSGSYTCQAHN 269
Score = 27.3 bits (59), Expect = 5.8, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 15/76 (19%)
Query: 96 PPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRH 155
PP Y+SGA ++ L C + NP P +W + N +P L +
Sbjct: 566 PPDSSYLSGA---------NLNLSCHSASNPSPQYSW--RINGIP----QQHTQVLFIAK 610
Query: 156 TNRHSAGIYLCVANNM 171
++ G Y C +N+
Sbjct: 611 ITPNNNGTYACFVSNL 626
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGE---YSYSG--NSLTVRHTNRHSAG 162
V V G L+C G P P + W + L E + G + L + AG
Sbjct: 24 VRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAG 83
Query: 163 IYLCVANN 170
+Y+C A N
Sbjct: 84 VYVCRARN 91
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 112 KGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSY-------SGNSLTVRHTNRHSAGIY 164
+G V + C+ P I+W R LP YS S + L V + + G Y
Sbjct: 32 EGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNY 91
Query: 165 LCVANNMVGSSA 176
C A N +G +
Sbjct: 92 NCTAVNRIGQES 103
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 113 GYSVTLECKADGNPVPNITW 132
G SV L C+A G+PVP I W
Sbjct: 36 GGSVELHCEAVGSPVPEIQW 55
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 29.6 bits (65), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 113 GYSVTLECKADGNPVPNITW 132
G SV L C+A G+PVP I W
Sbjct: 36 GGSVELHCEAVGSPVPEIQW 55
>pdb|3OQ3|B Chain B, Structural Basis Of Type-I Interferon Sequestration By A
Poxvirus Decoy Receptor
Length = 329
Score = 29.6 bits (65), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 129 NITWTRKNNNL--PGGEYSYSGNSLTVRHTNRHSAGIYLC 166
NITW + N L G +YS SG +L + + +G Y C
Sbjct: 160 NITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDC 199
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Query: 102 VSGAGKVEVK-KGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTN--- 157
++G + E K +G + CK+ G P P W +K N + + SG + N
Sbjct: 95 ITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTE 154
Query: 158 --------RHSAGIYLCVANNMVGSSAAASI 180
G Y C A N +GS++ +++
Sbjct: 155 LNIVNLQITEDPGEYECNATNSIGSASVSTV 185
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 108 VEVKKGYSVTLECKADGNPVPNITW 132
+E +G ++ C A+G+P P++TW
Sbjct: 128 LEEGQGLTLAASCTAEGSPAPSVTW 152
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 150 SLTVRHTNRHSAGIYLCVANNMVGSSAAASIALHVLCK 187
+LT+ + N AGIY CV G+ + A++ + + K
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQK 100
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 115 SVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTN-------RHSAGIYLCV 167
+V C A GNP+P + W KN E+ G + +H + G Y CV
Sbjct: 26 TVKFRCPAGGNPMPTMRWL-KNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 84
Query: 168 ANNMVGS 174
N GS
Sbjct: 85 VENEYGS 91
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 100 IYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNN-LPGGEYS-----YSGNSLTV 153
+ V + V +G + L+C+A + + +++W N + G Y S +L
Sbjct: 343 VIVEPPADLNVTEGMAAELKCRASTS-LTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNF 401
Query: 154 RHTNRHSAGIYLCVANNMVGSSAAAS 179
+ G+Y C+ +N VG++ A++
Sbjct: 402 TNVTVQDTGMYTCMVSNSVGNTTASA 427
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 115 SVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTN-------RHSAGIYLCV 167
+V C A GNP+P + W KN E+ G + +H + G Y CV
Sbjct: 27 TVKFRCPAGGNPMPTMRWL-KNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 85
Query: 168 ANNMVGS 174
N GS
Sbjct: 86 VENEYGS 92
>pdb|1WIT|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module)
(Ig 18'), Nmr, Minimized Average Structure
pdb|1WIU|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module)
(Ig 18'), Nmr, 30 Structures
Length = 93
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 95 IPPRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-----EYSYSGN 149
+ P+I+ S K+++K G++ LE G P P TWT ++ + S
Sbjct: 1 LKPKILTASR--KIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTT 58
Query: 150 SLTVRHTNRHSAGIYLCVANNMVGSSAA 177
S+ R +G Y N +G A
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEA 86
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYS----YSGNS--LTVRHTNRHSA 161
V +++G ++ L C G+P P ++W + L ++ +G + T+ + +
Sbjct: 232 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADS 291
Query: 162 GIYLCVANNMVGSSAA 177
G Y V N GS +
Sbjct: 292 GKYGLVVKNKYGSETS 307
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 115 SVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTN-------RHSAGIYLCV 167
+V C A GNP+P + W KN E+ G + +H + G Y CV
Sbjct: 28 TVKFRCPAGGNPMPTMRWL-KNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 86
Query: 168 ANNMVGS 174
N GS
Sbjct: 87 VENEYGS 93
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 16/71 (22%)
Query: 115 SVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRH-----------SAGI 163
+V C A GNP+P + W + G E+ + N+H G
Sbjct: 36 TVKFRCPAGGNPMPTMRWLKN-----GKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 90
Query: 164 YLCVANNMVGS 174
Y CV N GS
Sbjct: 91 YTCVVENEYGS 101
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 115 SVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTN-------RHSAGIYLCV 167
+V C A GNP+P + W KN E+ G + +H + G Y CV
Sbjct: 28 TVKFRCPAGGNPMPTMRWL-KNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 86
Query: 168 ANNMVGS 174
N GS
Sbjct: 87 VENEYGS 93
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 115 SVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTN-------RHSAGIYLCV 167
+V C A GNP+P + W KN E+ G + +H + G Y CV
Sbjct: 28 TVKFRCPAGGNPMPTMRWL-KNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 86
Query: 168 ANNMVGS 174
N GS
Sbjct: 87 VENEYGS 93
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 16/71 (22%)
Query: 115 SVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRH-----------SAGI 163
+V C A GNP+P + W + G E+ + N+H G
Sbjct: 36 TVKFRCPAGGNPMPTMRWLKN-----GKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 90
Query: 164 YLCVANNMVGS 174
Y CV N GS
Sbjct: 91 YTCVVENEYGS 101
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 115 SVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTN-------RHSAGIYLCV 167
+V C A GNP+P + W KN E+ G + +H + G Y CV
Sbjct: 25 TVKFRCPAGGNPMPTMRWL-KNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 83
Query: 168 ANNMVGS 174
N GS
Sbjct: 84 VENEYGS 90
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
Length = 91
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 113 GYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSL-TVRHTNRHSAGIYLCVANNM 171
G ++ L+C A G+P+P+ W + N LP ++ L V + + G Y C N
Sbjct: 18 GSTLVLQCVAVGSPIPHYQWFK--NELP---LTHETKKLYMVPYVDLEHQGTYWCHVYND 72
Query: 172 VGSSAAASIAL 182
S + + +
Sbjct: 73 RDSQDSKKVEI 83
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 16/71 (22%)
Query: 115 SVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRH-----------SAGI 163
+V C A GNP+P + W + G E+ + N+H G
Sbjct: 29 TVKFRCPAGGNPMPTMRWLKN-----GKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 83
Query: 164 YLCVANNMVGS 174
Y CV N GS
Sbjct: 84 YTCVVENEYGS 94
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 28.1 bits (61), Expect = 3.1, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 109 EVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-EY--SYSGNS--LTVRHTNRHSAGI 163
EV +G S C+ + P +TW + + L +Y Y+GN LT+ G
Sbjct: 493 EVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGE 552
Query: 164 YLCVANNMVGS 174
Y A N G+
Sbjct: 553 YTVRAKNSYGT 563
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 16/71 (22%)
Query: 115 SVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRH-----------SAGI 163
+V C A GNP+P + W + G E+ + N+H G
Sbjct: 30 TVKFRCPAGGNPMPTMRWLKN-----GKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 84
Query: 164 YLCVANNMVGS 174
Y CV N GS
Sbjct: 85 YTCVVENEYGS 95
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 27/73 (36%)
Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRHSAGIYLCV 167
VE G V + K G P P I W + L +G+ LT+ + G Y +
Sbjct: 210 VEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVI 269
Query: 168 ANNMVGSSAAASI 180
N + + +
Sbjct: 270 LTNPISKEKQSHV 282
>pdb|4GNS|B Chain B, Crystal Structure Of The Chs5-Chs6 Exomer Cargo Adaptor
Complex
Length = 754
Score = 27.7 bits (60), Expect = 3.7, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 4/29 (13%)
Query: 129 NITW---TRKNNNLPGGEYSYSGNSLTVR 154
N+ W T+K N +PGG+Y+ GNS +V+
Sbjct: 2 NLFWPSETKKQNEIPGGDYT-PGNSPSVQ 29
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 109 EVKKGYSVTLECKADGNPVPNITWTRKNNNL 139
++ +G VT C+ GNP P I W + +
Sbjct: 19 KIFEGMPVTFTCRVAGNPKPKIYWFKDGKQI 49
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGG-EY--SYSGNS--LTVRHTNRHSAG 162
EV +G S C+ + P +TW + + L +Y Y+GN LT+ G
Sbjct: 386 TEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKG 445
Query: 163 IYLCVANNMVGSSAA 177
Y A N G+
Sbjct: 446 EYTVRAKNSYGTKEE 460
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 112 KGYSVTLECKADGNPVPNITWTRKNNNL 139
+G VT C+ GNP P I W + +
Sbjct: 21 EGMPVTFTCRVAGNPKPKIYWFKDGKQI 48
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 8/67 (11%)
Query: 115 SVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTN-------RHSAGIYLCV 167
+V C A GNP P W KN E+ G + +H + G Y CV
Sbjct: 28 TVKFRCPAGGNPXPTXRWL-KNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCV 86
Query: 168 ANNMVGS 174
N GS
Sbjct: 87 VENEYGS 93
>pdb|2CQV|A Chain A, Solution Structure Of The Eighth Ig-Like Domain Of Human
Myosin Light Chain Kinase
Length = 114
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 97 PRIIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEY-----SYSGNSL 151
P+II KV + G SV L K G TW + + E+ S +G+ L
Sbjct: 8 PQIIQFPEDQKV--RAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKL 65
Query: 152 TVRHTNRHSAGIYLCVANNMVGSSAA 177
T+ + G Y + N +GS A
Sbjct: 66 TILAARQEHCGCYTLLVENKLGSRQA 91
>pdb|3EJJ|X Chain X, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 289
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 150 SLTVRHTNRHSAGIYLCVANNMVGSSAA 177
+L++ + AGIY CVA+N VG+ A
Sbjct: 246 ALSLNAVDFQDAGIYSCVASNDVGTRTA 273
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 108 VEVKKGYSVTLECKADGNPVPNITWTRKNNNLPGGEYS----YSGNS--LTVRHTNRHSA 161
V +++G ++ L C G+P P ++W + L ++ +G + T+ + +
Sbjct: 127 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADS 186
Query: 162 GIYLCVANNMVGSSAA 177
G Y V N GS +
Sbjct: 187 GKYGLVVKNKYGSETS 202
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 150 SLTVRHTNRHSAGIYLCVANNMVGSSAA 177
+L++ + AGIY CVA+N VG+ A
Sbjct: 246 ALSLNAVDFQDAGIYSCVASNDVGTRTA 273
>pdb|2ARJ|L Chain L, Cd8alpha-Alpha In Complex With Yts 105.18 Fab
pdb|2ARJ|A Chain A, Cd8alpha-Alpha In Complex With Yts 105.18 Fab
Length = 211
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 99 IIYVSGAGKVEVKKGYSVTLECKADGNPVPNITWTRK 135
I+ + V G VTL CKA N NI W ++
Sbjct: 2 IVMTQSPSSLAVSAGERVTLNCKASQNVRNNIAWYQQ 38
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 16/71 (22%)
Query: 115 SVTLECKADGNPVPNITWTRKNNNLPGGEYSYSGNSLTVRHTNRH-----------SAGI 163
+V C A GNP P W + G E+ + N+H G
Sbjct: 35 TVKFRCPAGGNPXPTXRWLKN-----GKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGN 89
Query: 164 YLCVANNMVGS 174
Y CV N GS
Sbjct: 90 YTCVVENEYGS 100
>pdb|3GBM|H Chain H, Crystal Structure Of Fab Cr6261 In Complex With A H5n1
Influenza Virus Hemagglutinin.
pdb|3GBM|I Chain I, Crystal Structure Of Fab Cr6261 In Complex With A H5n1
Influenza Virus Hemagglutinin.
pdb|3GBN|H Chain H, Crystal Structure Of Fab Cr6261 In Complex With The 1918
H1n1 Influenza Virus Hemagglutinin
Length = 226
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 109 EVKK-GYSVTLECKADGNPVPN--ITWTRKNNNLPGGEYSYSGNSLTVRHTNRHS---AG 162
EVKK G SV + CKA G P + I+W R+ PG + G + + T +++ G
Sbjct: 10 EVKKPGSSVKVSCKASGGPFRSYAISWVRQ---APGQGPEWMGGIIPIFGTTKYAPKFQG 66
Query: 163 IYLCVANNMVGS 174
A++ G+
Sbjct: 67 RVTITADDFAGT 78
>pdb|4EVN|A Chain A, Crystal Structure Of Fab Cr6261 (Somatic Heavy Chain With
Germline- Reverted Light Chain)
pdb|4EVN|C Chain C, Crystal Structure Of Fab Cr6261 (Somatic Heavy Chain With
Germline- Reverted Light Chain)
pdb|4EVN|E Chain E, Crystal Structure Of Fab Cr6261 (Somatic Heavy Chain With
Germline- Reverted Light Chain)
pdb|4EVN|G Chain G, Crystal Structure Of Fab Cr6261 (Somatic Heavy Chain With
Germline- Reverted Light Chain)
pdb|4EVN|I Chain I, Crystal Structure Of Fab Cr6261 (Somatic Heavy Chain With
Germline- Reverted Light Chain)
pdb|4EVN|K Chain K, Crystal Structure Of Fab Cr6261 (Somatic Heavy Chain With
Germline- Reverted Light Chain)
pdb|4EVN|M Chain M, Crystal Structure Of Fab Cr6261 (Somatic Heavy Chain With
Germline- Reverted Light Chain)
pdb|4EVN|O Chain O, Crystal Structure Of Fab Cr6261 (Somatic Heavy Chain With
Germline- Reverted Light Chain)
Length = 242
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 109 EVKK-GYSVTLECKADGNPVPN--ITWTRKNNNLPGGEYSYSGNSLTVRHTNRHS---AG 162
EVKK G SV + CKA G P + I+W R+ PG + G + + T +++ G
Sbjct: 10 EVKKPGSSVKVSCKASGGPFRSYAISWVRQ---APGQGPEWMGGIIPIFGTTKYAPKFQG 66
Query: 163 IYLCVANNMVGS 174
A++ G+
Sbjct: 67 RVTITADDFAGT 78
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 18/81 (22%)
Query: 113 GYSVTLECKADGNPVPNITWTRK---------NNNLPGGEYSYSG---------NSLTVR 154
G +V CK +P P+I W + +NLP + + L +R
Sbjct: 131 GSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLR 190
Query: 155 HTNRHSAGIYLCVANNMVGSS 175
+ + AG Y C+A N +G S
Sbjct: 191 NVSFEDAGEYTCLAGNSIGLS 211
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 110 VKKGYSVTLECKADGNPVPNITWTRK------NNNLPGGEYSYSGNSLTVRHTNRHSAGI 163
V +V +C + G P P + W + ++ + G + Y+ S+ + G
Sbjct: 29 VPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGN 88
Query: 164 YLCVANNMVGS 174
Y C+ N GS
Sbjct: 89 YTCIVENEYGS 99
>pdb|3U1S|H Chain H, Crystal Structure Of Human Fab Pgt145, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
Length = 267
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 108 VEVKK-GYSVTLECKADGNPVPN--ITWTRK 135
EVKK G SV + CKA GN N + W R+
Sbjct: 32 AEVKKPGSSVKVSCKASGNSFSNHDVHWVRQ 62
>pdb|3BI9|X Chain X, Tim-4
pdb|3BIA|X Chain X, Tim-4 In Complex With Sodium Potassium Tartrate
pdb|3BIB|X Chain X, Tim-4 In Complex With Phosphatidylserine
Length = 116
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 142 GEYSYSGNSLTVRHTNRHSAGIYLC 166
G+ + SLT+ +TNR +G+Y C
Sbjct: 66 GKVQFGEVSLTISNTNRGDSGVYCC 90
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 18/81 (22%)
Query: 113 GYSVTLECKADGNPVPNITWTRK---------NNNLPGGEYSYSG---------NSLTVR 154
G +V CK +P P+I W + +NLP + + L +R
Sbjct: 130 GSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLR 189
Query: 155 HTNRHSAGIYLCVANNMVGSS 175
+ + AG Y C+A N +G S
Sbjct: 190 NVSFEDAGEYTCLAGNSIGLS 210
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 110 VKKGYSVTLECKADGNPVPNITWTRK------NNNLPGGEYSYSGNSLTVRHTNRHSAGI 163
V +V +C + G P P + W + ++ + G + Y+ S+ + G
Sbjct: 28 VPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGN 87
Query: 164 YLCVANNMVGS 174
Y C+ N GS
Sbjct: 88 YTCIVENEYGS 98
>pdb|3MJG|X Chain X, The Structure Of A Platelet Derived Growth Factor Receptor
Complex
pdb|3MJG|Y Chain Y, The Structure Of A Platelet Derived Growth Factor Receptor
Complex
Length = 289
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 110 VKKGYSVTLECKADGNPVPNITWT 133
V++G ++TL C GN V N WT
Sbjct: 193 VRQGENITLMCIVIGNEVVNFEWT 216
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 18/81 (22%)
Query: 113 GYSVTLECKADGNPVPNITWTRK---------NNNLPGGEYSYSG---------NSLTVR 154
G +V CK +P P+I W + +NLP + + L +R
Sbjct: 130 GSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLR 189
Query: 155 HTNRHSAGIYLCVANNMVGSS 175
+ + AG Y C+A N +G S
Sbjct: 190 NVSFEDAGEYTCLAGNSIGLS 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,938,488
Number of Sequences: 62578
Number of extensions: 180551
Number of successful extensions: 939
Number of sequences better than 100.0: 145
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 728
Number of HSP's gapped (non-prelim): 218
length of query: 187
length of database: 14,973,337
effective HSP length: 93
effective length of query: 94
effective length of database: 9,153,583
effective search space: 860436802
effective search space used: 860436802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)